Correlation between copy number variation genes (focal events) and selected clinical features

Uterine Corpus Endometrioid Carcinoma (Primary solid tumor)

17 October 2014 | analyses__2014_10_17

Maintainer Information

Citation Information

Maintained by TCGA GDAC Team (Broad Institute/MD Anderson Cancer Center/Harvard Medical School)

Cite as Broad Institute TCGA Genome Data Analysis Center (2014): Correlation between copy number variation genes (focal events) and selected clinical features. Broad Institute of MIT and Harvard. doi:10.7908/C10R9NBD

Overview

Introduction

This pipeline computes the correlation between significant copy number variation (cnv focal) genes and selected clinical features.

Summary

Testing the association between copy number variation 100 focal events and 7 clinical features across 505 patients, 161 significant findings detected with Q value < 0.25.

amp_1p35.2 cnv correlated to 'AGE' and 'HISTOLOGICAL.TYPE'.
amp_1p34.2 cnv correlated to 'AGE' and 'HISTOLOGICAL.TYPE'.
amp_1p22.3 cnv correlated to 'HISTOLOGICAL.TYPE'.
amp_1q21.3 cnv correlated to 'AGE' and 'HISTOLOGICAL.TYPE'.
amp_1q22 cnv correlated to 'AGE' and 'HISTOLOGICAL.TYPE'.
amp_2p24.3 cnv correlated to 'HISTOLOGICAL.TYPE'.
amp_2q13 cnv correlated to 'AGE' and 'HISTOLOGICAL.TYPE'.
amp_3p25.1 cnv correlated to 'AGE' and 'HISTOLOGICAL.TYPE'.
amp_3p14.1 cnv correlated to 'HISTOLOGICAL.TYPE'.
amp_3q26.2 cnv correlated to 'AGE', 'HISTOLOGICAL.TYPE', and 'RACE'.
amp_3q26.2 cnv correlated to 'AGE', 'HISTOLOGICAL.TYPE', and 'RACE'.
amp_4p16.3 cnv correlated to 'AGE' and 'HISTOLOGICAL.TYPE'.
amp_5p15.33 cnv correlated to 'AGE' and 'HISTOLOGICAL.TYPE'.
amp_5q35.3 cnv correlated to 'AGE' and 'HISTOLOGICAL.TYPE'.
amp_6p24.2 cnv correlated to 'AGE' and 'HISTOLOGICAL.TYPE'.
amp_6p22.3 cnv correlated to 'AGE' and 'HISTOLOGICAL.TYPE'.
amp_6q25.1 cnv correlated to 'HISTOLOGICAL.TYPE'.
amp_7q31.2 cnv correlated to 'Time to Death'.
amp_8p11.21 cnv correlated to 'Time to Death' and 'HISTOLOGICAL.TYPE'.
amp_8q24.21 cnv correlated to 'Time to Death' and 'HISTOLOGICAL.TYPE'.
amp_8q24.21 cnv correlated to 'HISTOLOGICAL.TYPE'.
amp_9p24.2 cnv correlated to 'HISTOLOGICAL.TYPE'.
amp_9q34.3 cnv correlated to 'HISTOLOGICAL.TYPE'.
amp_11p11.2 cnv correlated to 'AGE' and 'HISTOLOGICAL.TYPE'.
amp_11q13.2 cnv correlated to 'HISTOLOGICAL.TYPE'.
amp_11q14.1 cnv correlated to 'Time to Death' and 'HISTOLOGICAL.TYPE'.
amp_12p12.1 cnv correlated to 'HISTOLOGICAL.TYPE'.
amp_12q13.11 cnv correlated to 'HISTOLOGICAL.TYPE'.
amp_12q13.2 cnv correlated to 'HISTOLOGICAL.TYPE'.
amp_13q34 cnv correlated to 'AGE' and 'HISTOLOGICAL.TYPE'.
amp_14q24.3 cnv correlated to 'HISTOLOGICAL.TYPE'.
amp_14q32.33 cnv correlated to 'HISTOLOGICAL.TYPE'.
amp_15q26.3 cnv correlated to 'HISTOLOGICAL.TYPE'.
amp_16p11.2 cnv correlated to 'AGE' and 'HISTOLOGICAL.TYPE'.
amp_17q11.2 cnv correlated to 'HISTOLOGICAL.TYPE'.
amp_17q12 cnv correlated to 'HISTOLOGICAL.TYPE'.
amp_17q25.1 cnv correlated to 'HISTOLOGICAL.TYPE' and 'RACE'.
amp_18p11.31 cnv correlated to 'AGE' and 'HISTOLOGICAL.TYPE'.
amp_18q11.2 cnv correlated to 'HISTOLOGICAL.TYPE'.
amp_19p13.2 cnv correlated to 'AGE' and 'HISTOLOGICAL.TYPE'.
amp_19q12 cnv correlated to 'Time to Death', 'AGE', 'HISTOLOGICAL.TYPE', and 'RACE'.
amp_20p13 cnv correlated to 'AGE' and 'HISTOLOGICAL.TYPE'.
amp_20q11.21 cnv correlated to 'AGE' and 'HISTOLOGICAL.TYPE'.
amp_20q13.12 cnv correlated to 'AGE' and 'HISTOLOGICAL.TYPE'.
amp_20q13.33 cnv correlated to 'AGE' and 'HISTOLOGICAL.TYPE'.
amp_22q12.2 cnv correlated to 'HISTOLOGICAL.TYPE'.
del_1p36.21 cnv correlated to 'AGE' and 'HISTOLOGICAL.TYPE'.
del_1p36.11 cnv correlated to 'AGE' and 'HISTOLOGICAL.TYPE'.
del_2q22.1 cnv correlated to 'Time to Death' and 'HISTOLOGICAL.TYPE'.
del_2q37.3 cnv correlated to 'HISTOLOGICAL.TYPE'.
del_3p14.2 cnv correlated to 'HISTOLOGICAL.TYPE'.
del_3q13.31 cnv correlated to 'HISTOLOGICAL.TYPE'.
del_4p16.3 cnv correlated to 'AGE' and 'HISTOLOGICAL.TYPE'.
del_4p15.2 cnv correlated to 'AGE' and 'HISTOLOGICAL.TYPE'.
del_4q22.1 cnv correlated to 'AGE' and 'HISTOLOGICAL.TYPE'.
del_4q34.3 cnv correlated to 'AGE' and 'HISTOLOGICAL.TYPE'.
del_5q12.1 cnv correlated to 'AGE' and 'HISTOLOGICAL.TYPE'.
del_6q26 cnv correlated to 'HISTOLOGICAL.TYPE'.
del_7p22.3 cnv correlated to 'AGE' and 'HISTOLOGICAL.TYPE'.
del_7q11.22 cnv correlated to 'AGE' and 'HISTOLOGICAL.TYPE'.
del_7q31.1 cnv correlated to 'AGE' and 'HISTOLOGICAL.TYPE'.
del_7q36.1 cnv correlated to 'AGE' and 'HISTOLOGICAL.TYPE'.
del_8p23.2 cnv correlated to 'AGE' and 'HISTOLOGICAL.TYPE'.
del_8p21.2 cnv correlated to 'AGE' and 'HISTOLOGICAL.TYPE'.
del_9p23 cnv correlated to 'HISTOLOGICAL.TYPE'.
del_9q21.2 cnv correlated to 'AGE' and 'HISTOLOGICAL.TYPE'.
del_9q34.2 cnv correlated to 'AGE' and 'HISTOLOGICAL.TYPE'.
del_10q23.31 cnv correlated to 'HISTOLOGICAL.TYPE'.
del_11p15.5 cnv correlated to 'AGE' and 'HISTOLOGICAL.TYPE'.
del_11q14.1 cnv correlated to 'AGE' and 'HISTOLOGICAL.TYPE'.
del_11q25 cnv correlated to 'AGE' and 'HISTOLOGICAL.TYPE'.
del_12q23.1 cnv correlated to 'HISTOLOGICAL.TYPE'.
del_12q24.33 cnv correlated to 'AGE' and 'HISTOLOGICAL.TYPE'.
del_13q11 cnv correlated to 'HISTOLOGICAL.TYPE'.
del_13q14.2 cnv correlated to 'HISTOLOGICAL.TYPE'.
del_14q13.1 cnv correlated to 'HISTOLOGICAL.TYPE'.
del_15q15.1 cnv correlated to 'AGE' and 'HISTOLOGICAL.TYPE'.
del_15q23 cnv correlated to 'AGE' and 'HISTOLOGICAL.TYPE'.
del_16p13.3 cnv correlated to 'AGE' and 'HISTOLOGICAL.TYPE'.
del_16q21 cnv correlated to 'AGE' and 'HISTOLOGICAL.TYPE'.
del_16q22.3 cnv correlated to 'AGE' and 'HISTOLOGICAL.TYPE'.
del_16q23.1 cnv correlated to 'AGE' and 'HISTOLOGICAL.TYPE'.
del_17p13.3 cnv correlated to 'AGE' and 'HISTOLOGICAL.TYPE'.
del_17p11.2 cnv correlated to 'AGE' and 'HISTOLOGICAL.TYPE'.
del_17q11.2 cnv correlated to 'AGE' and 'HISTOLOGICAL.TYPE'.
del_17q21.31 cnv correlated to 'AGE' and 'HISTOLOGICAL.TYPE'.
del_18q21.2 cnv correlated to 'HISTOLOGICAL.TYPE'.
del_18q23 cnv correlated to 'HISTOLOGICAL.TYPE'.
del_19p13.3 cnv correlated to 'Time to Death', 'AGE', and 'HISTOLOGICAL.TYPE'.
del_19p12 cnv correlated to 'HISTOLOGICAL.TYPE'.
del_19q13.43 cnv correlated to 'Time to Death' and 'HISTOLOGICAL.TYPE'.
del_20p12.1 cnv correlated to 'Time to Death'.
del_22q13.32 cnv correlated to 'AGE' and 'HISTOLOGICAL.TYPE'.
del_xp21.1 cnv correlated to 'Time to Death', 'AGE', and 'HISTOLOGICAL.TYPE'.

Results

Overview of the results

Table 1. Get Full Table Overview of the association between significant copy number variation of 100 focal events and 7 clinical features. Shown in the table are P values (Q values). Thresholded by Q value < 0.25, 161 significant findings detected.


		Clinical Features	Time to Death	AGE	HISTOLOGICAL TYPE	RADIATIONS RADIATION REGIMENINDICATION	COMPLETENESS OF RESECTION	RACE	ETHNICITY
	nCNV (%)	nWild-Type	logrank test	Wilcoxon-test	Fisher's exact test	Fisher's exact test	Fisher's exact test	Fisher's exact test	Fisher's exact test
amp 19q12	106 (21%)	399	0.00023 (0.127)	3e-08 (2.07e-05)	1e-05 (0.00672)	0.391 (1.00)	0.235 (1.00)	1e-05 (0.00672)	0.736 (1.00)
amp 3q26 2	158 (31%)	347	0.00607 (1.00)	3.02e-10 (2.11e-07)	1e-05 (0.00672)	0.0853 (1.00)	0.223 (1.00)	0.00012 (0.0678)	0.762 (1.00)
amp 3q26 2	148 (29%)	357	0.00538 (1.00)	2.42e-08 (1.68e-05)	1e-05 (0.00672)	0.124 (1.00)	0.147 (1.00)	0.00036 (0.195)	0.361 (1.00)
del 19p13 3	141 (28%)	364	1.45e-05 (0.00845)	2.02e-10 (1.42e-07)	1e-05 (0.00672)	0.0965 (1.00)	0.00465 (1.00)	0.00055 (0.295)	0.204 (1.00)
del xp21 1	77 (15%)	428	0.000365 (0.198)	0.000263 (0.145)	1e-05 (0.00672)	0.331 (1.00)	0.12 (1.00)	0.00462 (1.00)	0.118 (1.00)
amp 1p35 2	50 (10%)	455	0.13 (1.00)	0.000249 (0.138)	1e-05 (0.00672)	0.621 (1.00)	0.496 (1.00)	0.16 (1.00)	0.334 (1.00)
amp 1p34 2	65 (13%)	440	0.0264 (1.00)	0.000171 (0.0955)	1e-05 (0.00672)	0.299 (1.00)	0.0431 (1.00)	0.0458 (1.00)	0.663 (1.00)
amp 1q21 3	225 (45%)	280	0.0239 (1.00)	5.29e-05 (0.0302)	1e-05 (0.00672)	0.422 (1.00)	0.697 (1.00)	0.0106 (1.00)	0.398 (1.00)
amp 1q22	239 (47%)	266	0.00237 (1.00)	6.86e-07 (0.000467)	1e-05 (0.00672)	0.424 (1.00)	0.291 (1.00)	0.0257 (1.00)	0.577 (1.00)
amp 2q13	109 (22%)	396	0.00151 (0.77)	0.000358 (0.195)	1e-05 (0.00672)	0.397 (1.00)	0.206 (1.00)	0.186 (1.00)	1 (1.00)
amp 3p25 1	78 (15%)	427	0.0443 (1.00)	0.000359 (0.195)	1e-05 (0.00672)	0.0524 (1.00)	0.781 (1.00)	0.00342 (1.00)	0.438 (1.00)
amp 4p16 3	51 (10%)	454	0.329 (1.00)	1.15e-05 (0.00673)	1e-05 (0.00672)	0.741 (1.00)	0.231 (1.00)	0.355 (1.00)	0.334 (1.00)
amp 5p15 33	83 (16%)	422	0.0026 (1.00)	9.85e-05 (0.056)	1e-05 (0.00672)	0.14 (1.00)	0.156 (1.00)	0.00325 (1.00)	0.246 (1.00)
amp 5q35 3	50 (10%)	455	0.0929 (1.00)	0.00021 (0.116)	1e-05 (0.00672)	0.134 (1.00)	0.465 (1.00)	0.0241 (1.00)	0.377 (1.00)
amp 6p24 2	109 (22%)	396	0.31 (1.00)	2.24e-06 (0.00152)	1e-05 (0.00672)	0.0685 (1.00)	0.74 (1.00)	0.188 (1.00)	1 (1.00)
amp 6p22 3	98 (19%)	407	0.971 (1.00)	0.000166 (0.0927)	1e-05 (0.00672)	0.101 (1.00)	0.491 (1.00)	0.0151 (1.00)	0.477 (1.00)
amp 8p11 21	153 (30%)	352	6.02e-05 (0.0343)	0.843 (1.00)	1e-05 (0.00672)	0.0223 (1.00)	0.00744 (1.00)	0.256 (1.00)	0.762 (1.00)
amp 8q24 21	194 (38%)	311	0.000424 (0.229)	0.057 (1.00)	1e-05 (0.00672)	0.00768 (1.00)	0.21 (1.00)	0.143 (1.00)	0.577 (1.00)
amp 11p11 2	48 (10%)	457	0.0153 (1.00)	0.000132 (0.0744)	1e-05 (0.00672)	0.865 (1.00)	0.428 (1.00)	0.322 (1.00)	0.32 (1.00)
amp 11q14 1	54 (11%)	451	0.000188 (0.105)	0.0165 (1.00)	1e-05 (0.00672)	0.147 (1.00)	0.284 (1.00)	0.144 (1.00)	1 (1.00)
amp 13q34	56 (11%)	449	0.396 (1.00)	5.36e-05 (0.0306)	1e-05 (0.00672)	1 (1.00)	0.0158 (1.00)	0.0191 (1.00)	1 (1.00)
amp 16p11 2	62 (12%)	443	0.00287 (1.00)	0.000351 (0.192)	1e-05 (0.00672)	0.447 (1.00)	0.0968 (1.00)	0.129 (1.00)	0.674 (1.00)
amp 17q25 1	94 (19%)	411	0.00487 (1.00)	0.00106 (0.557)	1e-05 (0.00672)	0.524 (1.00)	0.196 (1.00)	0.0001 (0.0566)	0.476 (1.00)
amp 18p11 31	89 (18%)	416	0.0675 (1.00)	0.000121 (0.0684)	1e-05 (0.00672)	0.0178 (1.00)	0.019 (1.00)	0.00156 (0.794)	1 (1.00)
amp 19p13 2	90 (18%)	415	0.0107 (1.00)	4.21e-10 (2.94e-07)	1e-05 (0.00672)	0.0507 (1.00)	0.242 (1.00)	0.0011 (0.575)	1 (1.00)
amp 20p13	110 (22%)	395	0.455 (1.00)	5.13e-06 (0.00346)	1e-05 (0.00672)	0.0296 (1.00)	0.536 (1.00)	0.0362 (1.00)	0.482 (1.00)
amp 20q11 21	140 (28%)	365	0.00209 (1.00)	7.39e-08 (5.06e-05)	1e-05 (0.00672)	0.0139 (1.00)	0.119 (1.00)	0.00982 (1.00)	0.341 (1.00)
amp 20q13 12	140 (28%)	365	0.018 (1.00)	3.13e-08 (2.16e-05)	1e-05 (0.00672)	0.00123 (0.636)	0.0583 (1.00)	0.00768 (1.00)	0.357 (1.00)
amp 20q13 33	138 (27%)	367	0.00992 (1.00)	4.38e-08 (3.01e-05)	1e-05 (0.00672)	0.00237 (1.00)	0.0173 (1.00)	0.0784 (1.00)	0.756 (1.00)
del 1p36 21	64 (13%)	441	0.618 (1.00)	9.94e-05 (0.0563)	1e-05 (0.00672)	0.881 (1.00)	0.419 (1.00)	0.108 (1.00)	0.19 (1.00)
del 1p36 11	74 (15%)	431	0.0586 (1.00)	4.73e-05 (0.0271)	1e-05 (0.00672)	0.575 (1.00)	0.0233 (1.00)	0.219 (1.00)	0.111 (1.00)
del 2q22 1	44 (9%)	461	3.43e-09 (2.39e-06)	0.00472 (1.00)	1e-05 (0.00672)	0.004 (1.00)	0.00299 (1.00)	0.0635 (1.00)	1 (1.00)
del 4p16 3	81 (16%)	424	0.0064 (1.00)	0.000385 (0.208)	1e-05 (0.00672)	0.418 (1.00)	0.784 (1.00)	0.328 (1.00)	0.708 (1.00)
del 4p15 2	83 (16%)	422	0.0072 (1.00)	0.000164 (0.0917)	1e-05 (0.00672)	0.227 (1.00)	0.362 (1.00)	0.39 (1.00)	0.253 (1.00)
del 4q22 1	94 (19%)	411	0.00456 (1.00)	4.13e-06 (0.0028)	1e-05 (0.00672)	0.25 (1.00)	0.0495 (1.00)	0.145 (1.00)	0.712 (1.00)
del 4q34 3	120 (24%)	385	0.0286 (1.00)	5.71e-07 (0.00039)	1e-05 (0.00672)	0.197 (1.00)	0.132 (1.00)	0.00636 (1.00)	1 (1.00)
del 5q12 1	101 (20%)	404	0.0373 (1.00)	1.22e-05 (0.00709)	1e-05 (0.00672)	0.454 (1.00)	0.644 (1.00)	0.0626 (1.00)	0.154 (1.00)
del 7p22 3	67 (13%)	438	0.0023 (1.00)	0.000132 (0.0743)	1e-05 (0.00672)	0.24 (1.00)	0.303 (1.00)	0.0777 (1.00)	0.674 (1.00)
del 7q11 22	39 (8%)	466	0.787 (1.00)	3.18e-05 (0.0184)	1e-05 (0.00672)	0.357 (1.00)	0.632 (1.00)	0.361 (1.00)	1 (1.00)
del 7q31 1	52 (10%)	453	0.0599 (1.00)	4.75e-05 (0.0272)	1e-05 (0.00672)	0.745 (1.00)	0.497 (1.00)	0.109 (1.00)	1 (1.00)
del 7q36 1	61 (12%)	444	0.0112 (1.00)	2.17e-07 (0.000148)	1e-05 (0.00672)	0.88 (1.00)	0.298 (1.00)	0.211 (1.00)	1 (1.00)
del 8p23 2	106 (21%)	399	0.00309 (1.00)	3.52e-05 (0.0203)	1e-05 (0.00672)	0.27 (1.00)	0.0329 (1.00)	0.00915 (1.00)	0.316 (1.00)
del 8p21 2	104 (21%)	401	0.0144 (1.00)	4.25e-06 (0.00287)	1e-05 (0.00672)	0.324 (1.00)	0.104 (1.00)	0.0124 (1.00)	1 (1.00)
del 9q21 2	117 (23%)	388	0.00121 (0.627)	5.62e-10 (3.92e-07)	1e-05 (0.00672)	0.287 (1.00)	0.175 (1.00)	0.0629 (1.00)	0.504 (1.00)
del 9q34 2	119 (24%)	386	0.00716 (1.00)	3.56e-08 (2.45e-05)	1e-05 (0.00672)	0.158 (1.00)	0.14 (1.00)	0.148 (1.00)	1 (1.00)
del 11p15 5	94 (19%)	411	0.0184 (1.00)	9.43e-06 (0.00634)	1e-05 (0.00672)	0.0144 (1.00)	0.0924 (1.00)	0.0896 (1.00)	0.292 (1.00)
del 11q14 1	64 (13%)	441	0.0318 (1.00)	0.000357 (0.195)	1e-05 (0.00672)	0.132 (1.00)	0.553 (1.00)	0.0549 (1.00)	0.026 (1.00)
del 11q25	86 (17%)	419	0.00556 (1.00)	0.000283 (0.156)	1e-05 (0.00672)	0.00506 (1.00)	0.321 (1.00)	0.058 (1.00)	0.708 (1.00)
del 12q24 33	56 (11%)	449	0.0416 (1.00)	3.82e-05 (0.022)	1e-05 (0.00672)	0.0554 (1.00)	0.0395 (1.00)	0.386 (1.00)	1 (1.00)
del 15q15 1	128 (25%)	377	0.00159 (0.81)	4.08e-08 (2.81e-05)	1e-05 (0.00672)	0.0116 (1.00)	0.0372 (1.00)	0.0451 (1.00)	1 (1.00)
del 15q23	107 (21%)	398	0.0341 (1.00)	1.23e-05 (0.00713)	1e-05 (0.00672)	0.0873 (1.00)	0.377 (1.00)	0.0368 (1.00)	0.315 (1.00)
del 16p13 3	83 (16%)	422	0.0263 (1.00)	1.33e-06 (0.000904)	1e-05 (0.00672)	0.14 (1.00)	0.106 (1.00)	0.0256 (1.00)	1 (1.00)
del 16q21	141 (28%)	364	0.0308 (1.00)	2.59e-08 (1.79e-05)	1e-05 (0.00672)	0.181 (1.00)	0.214 (1.00)	0.0236 (1.00)	1 (1.00)
del 16q22 3	144 (29%)	361	0.0891 (1.00)	1.78e-08 (1.23e-05)	1e-05 (0.00672)	0.269 (1.00)	0.182 (1.00)	0.0339 (1.00)	1 (1.00)
del 16q23 1	152 (30%)	353	0.00932 (1.00)	2.47e-08 (1.71e-05)	1e-05 (0.00672)	0.276 (1.00)	0.0157 (1.00)	0.00261 (1.00)	1 (1.00)
del 17p13 3	110 (22%)	395	0.0015 (0.769)	0.000294 (0.161)	1e-05 (0.00672)	0.0917 (1.00)	0.156 (1.00)	0.00453 (1.00)	1 (1.00)
del 17p11 2	115 (23%)	390	0.00153 (0.778)	5.37e-06 (0.00362)	1e-05 (0.00672)	0.153 (1.00)	0.515 (1.00)	0.0328 (1.00)	1 (1.00)
del 17q11 2	95 (19%)	410	0.0676 (1.00)	1.13e-06 (0.000771)	1e-05 (0.00672)	0.159 (1.00)	0.201 (1.00)	0.791 (1.00)	0.717 (1.00)
del 17q21 31	100 (20%)	405	0.00166 (0.84)	1.77e-05 (0.0103)	1e-05 (0.00672)	0.133 (1.00)	0.0353 (1.00)	0.222 (1.00)	0.0248 (1.00)
del 19q13 43	58 (11%)	447	0.00029 (0.16)	0.000967 (0.508)	1e-05 (0.00672)	0.64 (1.00)	0.0345 (1.00)	0.367 (1.00)	0.154 (1.00)
del 22q13 32	129 (26%)	376	0.00552 (1.00)	4.3e-08 (2.95e-05)	1e-05 (0.00672)	0.0218 (1.00)	0.308 (1.00)	0.0131 (1.00)	0.121 (1.00)
amp 1p22 3	90 (18%)	415	0.466 (1.00)	0.00188 (0.942)	0.00033 (0.181)	0.602 (1.00)	0.908 (1.00)	0.434 (1.00)	0.138 (1.00)
amp 2p24 3	112 (22%)	393	0.000688 (0.368)	0.0192 (1.00)	1e-05 (0.00672)	0.0412 (1.00)	0.823 (1.00)	0.446 (1.00)	0.314 (1.00)
amp 3p14 1	60 (12%)	445	0.000777 (0.412)	0.0103 (1.00)	4e-05 (0.023)	0.021 (1.00)	0.263 (1.00)	0.0155 (1.00)	0.0551 (1.00)
amp 6q25 1	80 (16%)	425	0.358 (1.00)	0.00353 (1.00)	1e-05 (0.00672)	0.339 (1.00)	0.297 (1.00)	0.00789 (1.00)	0.701 (1.00)
amp 7q31 2	82 (16%)	423	5.15e-07 (0.000352)	0.118 (1.00)	0.00184 (0.922)	0.0218 (1.00)	0.377 (1.00)	0.791 (1.00)	0.479 (1.00)
amp 8q24 21	200 (40%)	305	0.000789 (0.417)	0.0205 (1.00)	1e-05 (0.00672)	0.0058 (1.00)	0.0118 (1.00)	0.549 (1.00)	1 (1.00)
amp 9p24 2	61 (12%)	444	0.0223 (1.00)	0.00166 (0.84)	1e-05 (0.00672)	0.17 (1.00)	0.342 (1.00)	0.103 (1.00)	0.0141 (1.00)
amp 9q34 3	37 (7%)	468	0.0146 (1.00)	0.00163 (0.824)	1e-05 (0.00672)	1 (1.00)	0.269 (1.00)	0.00909 (1.00)	1 (1.00)
amp 11q13 2	67 (13%)	438	0.0494 (1.00)	0.000902 (0.475)	1e-05 (0.00672)	0.558 (1.00)	0.222 (1.00)	0.744 (1.00)	1 (1.00)
amp 12p12 1	86 (17%)	419	0.697 (1.00)	0.104 (1.00)	1e-05 (0.00672)	0.426 (1.00)	0.618 (1.00)	0.0978 (1.00)	0.136 (1.00)
amp 12q13 11	81 (16%)	424	0.503 (1.00)	0.639 (1.00)	1e-05 (0.00672)	0.104 (1.00)	0.392 (1.00)	0.00821 (1.00)	0.703 (1.00)
amp 12q13 2	92 (18%)	413	0.541 (1.00)	0.0859 (1.00)	1e-05 (0.00672)	0.0384 (1.00)	0.0836 (1.00)	0.0738 (1.00)	1 (1.00)
amp 14q24 3	59 (12%)	446	0.000753 (0.4)	0.00133 (0.685)	1e-05 (0.00672)	0.122 (1.00)	0.365 (1.00)	0.491 (1.00)	0.653 (1.00)
amp 14q32 33	72 (14%)	433	0.076 (1.00)	0.000505 (0.272)	1e-05 (0.00672)	0.0146 (1.00)	0.211 (1.00)	0.0091 (1.00)	0.702 (1.00)
amp 15q26 3	36 (7%)	469	0.0383 (1.00)	0.00511 (1.00)	0.00015 (0.084)	0.0791 (1.00)	0.0101 (1.00)	0.796 (1.00)	0.32 (1.00)
amp 17q11 2	68 (13%)	437	0.0288 (1.00)	0.00583 (1.00)	1e-05 (0.00672)	0.38 (1.00)	0.00125 (0.646)	0.00544 (1.00)	0.22 (1.00)
amp 17q12	69 (14%)	436	0.00232 (1.00)	0.00128 (0.661)	1e-05 (0.00672)	1 (1.00)	0.173 (1.00)	0.00805 (1.00)	1 (1.00)
amp 18q11 2	64 (13%)	441	0.0337 (1.00)	0.00177 (0.891)	1e-05 (0.00672)	0.368 (1.00)	0.0296 (1.00)	0.00427 (1.00)	1 (1.00)
amp 22q12 2	58 (11%)	447	0.00178 (0.895)	0.000742 (0.395)	1e-05 (0.00672)	0.0841 (1.00)	0.00092 (0.484)	0.0118 (1.00)	0.653 (1.00)
del 2q37 3	49 (10%)	456	0.0648 (1.00)	0.00327 (1.00)	0.00014 (0.0785)	0.177 (1.00)	0.063 (1.00)	0.116 (1.00)	1 (1.00)
del 3p14 2	69 (14%)	436	0.149 (1.00)	0.00071 (0.379)	1e-05 (0.00672)	0.469 (1.00)	0.72 (1.00)	0.0471 (1.00)	0.229 (1.00)
del 3q13 31	40 (8%)	465	0.37 (1.00)	0.000718 (0.383)	2e-05 (0.0116)	0.356 (1.00)	0.855 (1.00)	0.805 (1.00)	0.611 (1.00)
del 6q26	43 (9%)	462	0.25 (1.00)	0.00543 (1.00)	1e-05 (0.00672)	0.596 (1.00)	0.949 (1.00)	0.806 (1.00)	0.611 (1.00)
del 9p23	70 (14%)	435	0.179 (1.00)	0.00272 (1.00)	1e-05 (0.00672)	0.0837 (1.00)	0.25 (1.00)	0.173 (1.00)	1 (1.00)
del 10q23 31	68 (13%)	437	0.0856 (1.00)	0.000608 (0.326)	1e-05 (0.00672)	0.0124 (1.00)	0.111 (1.00)	0.306 (1.00)	0.685 (1.00)
del 12q23 1	46 (9%)	459	0.0129 (1.00)	0.0024 (1.00)	1e-05 (0.00672)	0.122 (1.00)	0.0229 (1.00)	0.0344 (1.00)	1 (1.00)
del 13q11	86 (17%)	419	0.014 (1.00)	0.00124 (0.642)	1e-05 (0.00672)	0.11 (1.00)	0.161 (1.00)	0.184 (1.00)	0.257 (1.00)
del 13q14 2	93 (18%)	412	0.0244 (1.00)	0.00193 (0.964)	1e-05 (0.00672)	0.0146 (1.00)	0.44 (1.00)	0.142 (1.00)	0.151 (1.00)
del 14q13 1	67 (13%)	438	0.0122 (1.00)	0.00407 (1.00)	1e-05 (0.00672)	0.379 (1.00)	0.966 (1.00)	0.00683 (1.00)	0.22 (1.00)
del 18q21 2	82 (16%)	423	0.654 (1.00)	0.000777 (0.412)	1e-05 (0.00672)	0.0101 (1.00)	0.141 (1.00)	0.048 (1.00)	0.253 (1.00)
del 18q23	87 (17%)	418	0.00809 (1.00)	0.00113 (0.589)	1e-05 (0.00672)	0.00143 (0.735)	0.00978 (1.00)	0.0698 (1.00)	0.0596 (1.00)
del 19p12	52 (10%)	453	0.0238 (1.00)	0.0203 (1.00)	1e-05 (0.00672)	0.048 (1.00)	0.119 (1.00)	0.0679 (1.00)	0.635 (1.00)
del 20p12 1	31 (6%)	474	1.98e-05 (0.0115)	0.226 (1.00)	0.00047 (0.253)	0.836 (1.00)	0.0491 (1.00)	0.263 (1.00)	0.237 (1.00)
amp 1q44	202 (40%)	303	0.148 (1.00)	0.00342 (1.00)	0.623 (1.00)	0.839 (1.00)	0.571 (1.00)	0.354 (1.00)	0.255 (1.00)
amp 8p11 22	120 (24%)	385	0.0216 (1.00)	0.144 (1.00)	0.843 (1.00)	0.292 (1.00)	0.706 (1.00)	0.367 (1.00)	0.529 (1.00)
amp 10q22 2	136 (27%)	369	0.329 (1.00)	0.361 (1.00)	0.00179 (0.899)	0.501 (1.00)	0.583 (1.00)	0.558 (1.00)	1 (1.00)
amp xp11 23	82 (16%)	423	0.198 (1.00)	0.131 (1.00)	0.00119 (0.62)	0.0573 (1.00)	0.542 (1.00)	0.983 (1.00)	0.704 (1.00)
amp xq28	83 (16%)	422	0.00132 (0.681)	0.129 (1.00)	0.00281 (1.00)	0.894 (1.00)	0.209 (1.00)	0.569 (1.00)	0.445 (1.00)
del 2p25 3	25 (5%)	480	0.0387 (1.00)	0.0456 (1.00)	0.00615 (1.00)	0.105 (1.00)	0.286 (1.00)	0.337 (1.00)	1 (1.00)

'amp_1p35.2' versus 'AGE'

P value = 0.000249 (Wilcoxon-test), Q value = 0.14

Table S1. Gene #1: 'amp_1p35.2' versus Clinical Feature #2: 'AGE'

	nPatients	Mean (Std.Dev)
ALL	504	63.8 (11.2)
AMP PEAK 1(1P35.2) MUTATED	50	68.6 (9.0)
AMP PEAK 1(1P35.2) WILD-TYPE	454	63.3 (11.3)

Figure S1. Get High-res Image Gene #1: 'amp_1p35.2' versus Clinical Feature #2: 'AGE'

'amp_1p35.2' versus 'HISTOLOGICAL.TYPE'

P value = 1e-05 (Fisher's exact test), Q value = 0.0067

Table S2. Gene #1: 'amp_1p35.2' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

nPatients	ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA	MIXED SEROUS AND ENDOMETRIOID	SEROUS ENDOMETRIAL ADENOCARCINOMA
ALL	380	21	104
AMP PEAK 1(1P35.2) MUTATED	14	5	31
AMP PEAK 1(1P35.2) WILD-TYPE	366	16	73

Figure S2. Get High-res Image Gene #1: 'amp_1p35.2' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

'amp_1p34.2' versus 'AGE'

P value = 0.000171 (Wilcoxon-test), Q value = 0.095

Table S3. Gene #2: 'amp_1p34.2' versus Clinical Feature #2: 'AGE'

	nPatients	Mean (Std.Dev)
ALL	504	63.8 (11.2)
AMP PEAK 2(1P34.2) MUTATED	65	68.5 (9.7)
AMP PEAK 2(1P34.2) WILD-TYPE	439	63.2 (11.3)

Figure S3. Get High-res Image Gene #2: 'amp_1p34.2' versus Clinical Feature #2: 'AGE'

'amp_1p34.2' versus 'HISTOLOGICAL.TYPE'

P value = 1e-05 (Fisher's exact test), Q value = 0.0067

Table S4. Gene #2: 'amp_1p34.2' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

nPatients	ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA	MIXED SEROUS AND ENDOMETRIOID	SEROUS ENDOMETRIAL ADENOCARCINOMA
ALL	380	21	104
AMP PEAK 2(1P34.2) MUTATED	19	7	39
AMP PEAK 2(1P34.2) WILD-TYPE	361	14	65

Figure S4. Get High-res Image Gene #2: 'amp_1p34.2' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

'amp_1p22.3' versus 'HISTOLOGICAL.TYPE'

P value = 0.00033 (Fisher's exact test), Q value = 0.18

Table S5. Gene #3: 'amp_1p22.3' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

nPatients	ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA	MIXED SEROUS AND ENDOMETRIOID	SEROUS ENDOMETRIAL ADENOCARCINOMA
ALL	380	21	104
AMP PEAK 3(1P22.3) MUTATED	53	5	32
AMP PEAK 3(1P22.3) WILD-TYPE	327	16	72

Figure S5. Get High-res Image Gene #3: 'amp_1p22.3' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

'amp_1q21.3' versus 'AGE'

P value = 5.29e-05 (Wilcoxon-test), Q value = 0.03

Table S6. Gene #4: 'amp_1q21.3' versus Clinical Feature #2: 'AGE'

	nPatients	Mean (Std.Dev)
ALL	504	63.8 (11.2)
AMP PEAK 4(1Q21.3) MUTATED	225	66.2 (10.3)
AMP PEAK 4(1Q21.3) WILD-TYPE	279	61.9 (11.6)

Figure S6. Get High-res Image Gene #4: 'amp_1q21.3' versus Clinical Feature #2: 'AGE'

'amp_1q21.3' versus 'HISTOLOGICAL.TYPE'

P value = 1e-05 (Fisher's exact test), Q value = 0.0067

Table S7. Gene #4: 'amp_1q21.3' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

nPatients	ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA	MIXED SEROUS AND ENDOMETRIOID	SEROUS ENDOMETRIAL ADENOCARCINOMA
ALL	380	21	104
AMP PEAK 4(1Q21.3) MUTATED	148	10	67
AMP PEAK 4(1Q21.3) WILD-TYPE	232	11	37

Figure S7. Get High-res Image Gene #4: 'amp_1q21.3' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

'amp_1q22' versus 'AGE'

P value = 6.86e-07 (Wilcoxon-test), Q value = 0.00047

Table S8. Gene #5: 'amp_1q22' versus Clinical Feature #2: 'AGE'

	nPatients	Mean (Std.Dev)
ALL	504	63.8 (11.2)
AMP PEAK 5(1Q22) MUTATED	239	66.5 (10.4)
AMP PEAK 5(1Q22) WILD-TYPE	265	61.4 (11.4)

Figure S8. Get High-res Image Gene #5: 'amp_1q22' versus Clinical Feature #2: 'AGE'

'amp_1q22' versus 'HISTOLOGICAL.TYPE'

P value = 1e-05 (Fisher's exact test), Q value = 0.0067

Table S9. Gene #5: 'amp_1q22' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

nPatients	ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA	MIXED SEROUS AND ENDOMETRIOID	SEROUS ENDOMETRIAL ADENOCARCINOMA
ALL	380	21	104
AMP PEAK 5(1Q22) MUTATED	155	10	74
AMP PEAK 5(1Q22) WILD-TYPE	225	11	30

Figure S9. Get High-res Image Gene #5: 'amp_1q22' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

'amp_2p24.3' versus 'HISTOLOGICAL.TYPE'

P value = 1e-05 (Fisher's exact test), Q value = 0.0067

Table S10. Gene #7: 'amp_2p24.3' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

nPatients	ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA	MIXED SEROUS AND ENDOMETRIOID	SEROUS ENDOMETRIAL ADENOCARCINOMA
ALL	380	21	104
AMP PEAK 7(2P24.3) MUTATED	53	7	52
AMP PEAK 7(2P24.3) WILD-TYPE	327	14	52

Figure S10. Get High-res Image Gene #7: 'amp_2p24.3' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

'amp_2q13' versus 'AGE'

P value = 0.000358 (Wilcoxon-test), Q value = 0.19

Table S11. Gene #8: 'amp_2q13' versus Clinical Feature #2: 'AGE'

	nPatients	Mean (Std.Dev)
ALL	504	63.8 (11.2)
AMP PEAK 8(2Q13) MUTATED	108	66.9 (9.1)
AMP PEAK 8(2Q13) WILD-TYPE	396	63.0 (11.6)

Figure S11. Get High-res Image Gene #8: 'amp_2q13' versus Clinical Feature #2: 'AGE'

'amp_2q13' versus 'HISTOLOGICAL.TYPE'

P value = 1e-05 (Fisher's exact test), Q value = 0.0067

Table S12. Gene #8: 'amp_2q13' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

nPatients	ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA	MIXED SEROUS AND ENDOMETRIOID	SEROUS ENDOMETRIAL ADENOCARCINOMA
ALL	380	21	104
AMP PEAK 8(2Q13) MUTATED	43	5	61
AMP PEAK 8(2Q13) WILD-TYPE	337	16	43

Figure S12. Get High-res Image Gene #8: 'amp_2q13' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

'amp_3p25.1' versus 'AGE'

P value = 0.000359 (Wilcoxon-test), Q value = 0.2

Table S13. Gene #9: 'amp_3p25.1' versus Clinical Feature #2: 'AGE'

	nPatients	Mean (Std.Dev)
ALL	504	63.8 (11.2)
AMP PEAK 9(3P25.1) MUTATED	78	68.3 (10.5)
AMP PEAK 9(3P25.1) WILD-TYPE	426	63.0 (11.2)

Figure S13. Get High-res Image Gene #9: 'amp_3p25.1' versus Clinical Feature #2: 'AGE'

'amp_3p25.1' versus 'HISTOLOGICAL.TYPE'

P value = 1e-05 (Fisher's exact test), Q value = 0.0067

Table S14. Gene #9: 'amp_3p25.1' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

nPatients	ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA	MIXED SEROUS AND ENDOMETRIOID	SEROUS ENDOMETRIAL ADENOCARCINOMA
ALL	380	21	104
AMP PEAK 9(3P25.1) MUTATED	34	1	43
AMP PEAK 9(3P25.1) WILD-TYPE	346	20	61

Figure S14. Get High-res Image Gene #9: 'amp_3p25.1' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

'amp_3p14.1' versus 'HISTOLOGICAL.TYPE'

P value = 4e-05 (Fisher's exact test), Q value = 0.023

Table S15. Gene #10: 'amp_3p14.1' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

nPatients	ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA	MIXED SEROUS AND ENDOMETRIOID	SEROUS ENDOMETRIAL ADENOCARCINOMA
ALL	380	21	104
AMP PEAK 10(3P14.1) MUTATED	31	3	26
AMP PEAK 10(3P14.1) WILD-TYPE	349	18	78

Figure S15. Get High-res Image Gene #10: 'amp_3p14.1' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

'amp_3q26.2' versus 'AGE'

P value = 3.02e-10 (Wilcoxon-test), Q value = 2.1e-07

Table S16. Gene #11: 'amp_3q26.2' versus Clinical Feature #2: 'AGE'

	nPatients	Mean (Std.Dev)
ALL	504	63.8 (11.2)
AMP PEAK 11(3Q26.2) MUTATED	158	68.2 (9.4)
AMP PEAK 11(3Q26.2) WILD-TYPE	346	61.9 (11.4)

Figure S16. Get High-res Image Gene #11: 'amp_3q26.2' versus Clinical Feature #2: 'AGE'

'amp_3q26.2' versus 'HISTOLOGICAL.TYPE'

P value = 1e-05 (Fisher's exact test), Q value = 0.0067

Table S17. Gene #11: 'amp_3q26.2' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

nPatients	ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA	MIXED SEROUS AND ENDOMETRIOID	SEROUS ENDOMETRIAL ADENOCARCINOMA
ALL	380	21	104
AMP PEAK 11(3Q26.2) MUTATED	68	8	82
AMP PEAK 11(3Q26.2) WILD-TYPE	312	13	22

Figure S17. Get High-res Image Gene #11: 'amp_3q26.2' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

'amp_3q26.2' versus 'RACE'

P value = 0.00012 (Fisher's exact test), Q value = 0.068

Table S18. Gene #11: 'amp_3q26.2' versus Clinical Feature #6: 'RACE'

nPatients	AMERICAN INDIAN OR ALASKA NATIVE	ASIAN	BLACK OR AFRICAN AMERICAN	NATIVE HAWAIIAN OR OTHER PACIFIC ISLANDER	WHITE
ALL	4	19	90	9	357
AMP PEAK 11(3Q26.2) MUTATED	0	3	45	4	95
AMP PEAK 11(3Q26.2) WILD-TYPE	4	16	45	5	262

Figure S18. Get High-res Image Gene #11: 'amp_3q26.2' versus Clinical Feature #6: 'RACE'

'amp_3q26.2' versus 'AGE'

P value = 2.42e-08 (Wilcoxon-test), Q value = 1.7e-05

Table S19. Gene #12: 'amp_3q26.2' versus Clinical Feature #2: 'AGE'

	nPatients	Mean (Std.Dev)
ALL	504	63.8 (11.2)
AMP PEAK 12(3Q26.2) MUTATED	148	67.9 (9.4)
AMP PEAK 12(3Q26.2) WILD-TYPE	356	62.1 (11.5)

Figure S19. Get High-res Image Gene #12: 'amp_3q26.2' versus Clinical Feature #2: 'AGE'

'amp_3q26.2' versus 'HISTOLOGICAL.TYPE'

P value = 1e-05 (Fisher's exact test), Q value = 0.0067

Table S20. Gene #12: 'amp_3q26.2' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

nPatients	ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA	MIXED SEROUS AND ENDOMETRIOID	SEROUS ENDOMETRIAL ADENOCARCINOMA
ALL	380	21	104
AMP PEAK 12(3Q26.2) MUTATED	61	7	80
AMP PEAK 12(3Q26.2) WILD-TYPE	319	14	24

Figure S20. Get High-res Image Gene #12: 'amp_3q26.2' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

'amp_3q26.2' versus 'RACE'

P value = 0.00036 (Fisher's exact test), Q value = 0.2

Table S21. Gene #12: 'amp_3q26.2' versus Clinical Feature #6: 'RACE'

nPatients	AMERICAN INDIAN OR ALASKA NATIVE	ASIAN	BLACK OR AFRICAN AMERICAN	NATIVE HAWAIIAN OR OTHER PACIFIC ISLANDER	WHITE
ALL	4	19	90	9	357
AMP PEAK 12(3Q26.2) MUTATED	0	3	42	4	89
AMP PEAK 12(3Q26.2) WILD-TYPE	4	16	48	5	268

Figure S21. Get High-res Image Gene #12: 'amp_3q26.2' versus Clinical Feature #6: 'RACE'

'amp_4p16.3' versus 'AGE'

P value = 1.15e-05 (Wilcoxon-test), Q value = 0.0067

Table S22. Gene #13: 'amp_4p16.3' versus Clinical Feature #2: 'AGE'

	nPatients	Mean (Std.Dev)
ALL	504	63.8 (11.2)
AMP PEAK 13(4P16.3) MUTATED	51	69.8 (9.0)
AMP PEAK 13(4P16.3) WILD-TYPE	453	63.2 (11.2)

Figure S22. Get High-res Image Gene #13: 'amp_4p16.3' versus Clinical Feature #2: 'AGE'

'amp_4p16.3' versus 'HISTOLOGICAL.TYPE'

P value = 1e-05 (Fisher's exact test), Q value = 0.0067

Table S23. Gene #13: 'amp_4p16.3' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

nPatients	ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA	MIXED SEROUS AND ENDOMETRIOID	SEROUS ENDOMETRIAL ADENOCARCINOMA
ALL	380	21	104
AMP PEAK 13(4P16.3) MUTATED	15	1	35
AMP PEAK 13(4P16.3) WILD-TYPE	365	20	69

Figure S23. Get High-res Image Gene #13: 'amp_4p16.3' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

'amp_5p15.33' versus 'AGE'

P value = 9.85e-05 (Wilcoxon-test), Q value = 0.056

Table S24. Gene #14: 'amp_5p15.33' versus Clinical Feature #2: 'AGE'

	nPatients	Mean (Std.Dev)
ALL	504	63.8 (11.2)
AMP PEAK 14(5P15.33) MUTATED	83	67.6 (10.1)
AMP PEAK 14(5P15.33) WILD-TYPE	421	63.1 (11.3)

Figure S24. Get High-res Image Gene #14: 'amp_5p15.33' versus Clinical Feature #2: 'AGE'

'amp_5p15.33' versus 'HISTOLOGICAL.TYPE'

P value = 1e-05 (Fisher's exact test), Q value = 0.0067

Table S25. Gene #14: 'amp_5p15.33' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

nPatients	ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA	MIXED SEROUS AND ENDOMETRIOID	SEROUS ENDOMETRIAL ADENOCARCINOMA
ALL	380	21	104
AMP PEAK 14(5P15.33) MUTATED	28	3	52
AMP PEAK 14(5P15.33) WILD-TYPE	352	18	52

Figure S25. Get High-res Image Gene #14: 'amp_5p15.33' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

'amp_5q35.3' versus 'AGE'

P value = 0.00021 (Wilcoxon-test), Q value = 0.12

Table S26. Gene #15: 'amp_5q35.3' versus Clinical Feature #2: 'AGE'

	nPatients	Mean (Std.Dev)
ALL	504	63.8 (11.2)
AMP PEAK 15(5Q35.3) MUTATED	50	69.3 (10.3)
AMP PEAK 15(5Q35.3) WILD-TYPE	454	63.2 (11.2)

Figure S26. Get High-res Image Gene #15: 'amp_5q35.3' versus Clinical Feature #2: 'AGE'

'amp_5q35.3' versus 'HISTOLOGICAL.TYPE'

P value = 1e-05 (Fisher's exact test), Q value = 0.0067

Table S27. Gene #15: 'amp_5q35.3' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

nPatients	ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA	MIXED SEROUS AND ENDOMETRIOID	SEROUS ENDOMETRIAL ADENOCARCINOMA
ALL	380	21	104
AMP PEAK 15(5Q35.3) MUTATED	19	2	29
AMP PEAK 15(5Q35.3) WILD-TYPE	361	19	75

Figure S27. Get High-res Image Gene #15: 'amp_5q35.3' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

'amp_6p24.2' versus 'AGE'

P value = 2.24e-06 (Wilcoxon-test), Q value = 0.0015

Table S28. Gene #16: 'amp_6p24.2' versus Clinical Feature #2: 'AGE'

	nPatients	Mean (Std.Dev)
ALL	504	63.8 (11.2)
AMP PEAK 16(6P24.2) MUTATED	109	68.0 (9.8)
AMP PEAK 16(6P24.2) WILD-TYPE	395	62.7 (11.3)

Figure S28. Get High-res Image Gene #16: 'amp_6p24.2' versus Clinical Feature #2: 'AGE'

'amp_6p24.2' versus 'HISTOLOGICAL.TYPE'

P value = 1e-05 (Fisher's exact test), Q value = 0.0067

Table S29. Gene #16: 'amp_6p24.2' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

nPatients	ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA	MIXED SEROUS AND ENDOMETRIOID	SEROUS ENDOMETRIAL ADENOCARCINOMA
ALL	380	21	104
AMP PEAK 16(6P24.2) MUTATED	42	5	62
AMP PEAK 16(6P24.2) WILD-TYPE	338	16	42

Figure S29. Get High-res Image Gene #16: 'amp_6p24.2' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

'amp_6p22.3' versus 'AGE'

P value = 0.000166 (Wilcoxon-test), Q value = 0.093

Table S30. Gene #17: 'amp_6p22.3' versus Clinical Feature #2: 'AGE'

	nPatients	Mean (Std.Dev)
ALL	504	63.8 (11.2)
AMP PEAK 17(6P22.3) MUTATED	98	67.3 (9.9)
AMP PEAK 17(6P22.3) WILD-TYPE	406	63.0 (11.4)

Figure S30. Get High-res Image Gene #17: 'amp_6p22.3' versus Clinical Feature #2: 'AGE'

'amp_6p22.3' versus 'HISTOLOGICAL.TYPE'

P value = 1e-05 (Fisher's exact test), Q value = 0.0067

Table S31. Gene #17: 'amp_6p22.3' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

nPatients	ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA	MIXED SEROUS AND ENDOMETRIOID	SEROUS ENDOMETRIAL ADENOCARCINOMA
ALL	380	21	104
AMP PEAK 17(6P22.3) MUTATED	37	4	57
AMP PEAK 17(6P22.3) WILD-TYPE	343	17	47

Figure S31. Get High-res Image Gene #17: 'amp_6p22.3' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

'amp_6q25.1' versus 'HISTOLOGICAL.TYPE'

P value = 1e-05 (Fisher's exact test), Q value = 0.0067

Table S32. Gene #18: 'amp_6q25.1' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

nPatients	ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA	MIXED SEROUS AND ENDOMETRIOID	SEROUS ENDOMETRIAL ADENOCARCINOMA
ALL	380	21	104
AMP PEAK 18(6Q25.1) MUTATED	42	2	36
AMP PEAK 18(6Q25.1) WILD-TYPE	338	19	68

Figure S32. Get High-res Image Gene #18: 'amp_6q25.1' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

'amp_7q31.2' versus 'Time to Death'

P value = 5.15e-07 (logrank test), Q value = 0.00035

Table S33. Gene #19: 'amp_7q31.2' versus Clinical Feature #1: 'Time to Death'

	nPatients	nDeath	Duration Range (Median), Month
ALL	503	60	0.0 - 191.8 (22.8)
AMP PEAK 19(7Q31.2) MUTATED	81	21	0.0 - 125.4 (16.0)
AMP PEAK 19(7Q31.2) WILD-TYPE	422	39	0.1 - 191.8 (23.9)

Figure S33. Get High-res Image Gene #19: 'amp_7q31.2' versus Clinical Feature #1: 'Time to Death'

'amp_8p11.21' versus 'Time to Death'

P value = 6.02e-05 (logrank test), Q value = 0.034

Table S34. Gene #21: 'amp_8p11.21' versus Clinical Feature #1: 'Time to Death'

	nPatients	nDeath	Duration Range (Median), Month
ALL	503	60	0.0 - 191.8 (22.8)
AMP PEAK 21(8P11.21) MUTATED	152	30	0.0 - 125.4 (19.3)
AMP PEAK 21(8P11.21) WILD-TYPE	351	30	0.1 - 191.8 (24.3)

Figure S34. Get High-res Image Gene #21: 'amp_8p11.21' versus Clinical Feature #1: 'Time to Death'

'amp_8p11.21' versus 'HISTOLOGICAL.TYPE'

P value = 1e-05 (Fisher's exact test), Q value = 0.0067

Table S35. Gene #21: 'amp_8p11.21' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

nPatients	ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA	MIXED SEROUS AND ENDOMETRIOID	SEROUS ENDOMETRIAL ADENOCARCINOMA
ALL	380	21	104
AMP PEAK 21(8P11.21) MUTATED	90	7	56
AMP PEAK 21(8P11.21) WILD-TYPE	290	14	48

Figure S35. Get High-res Image Gene #21: 'amp_8p11.21' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

'amp_8q24.21' versus 'Time to Death'

P value = 0.000424 (logrank test), Q value = 0.23

Table S36. Gene #22: 'amp_8q24.21' versus Clinical Feature #1: 'Time to Death'

	nPatients	nDeath	Duration Range (Median), Month
ALL	503	60	0.0 - 191.8 (22.8)
AMP PEAK 22(8Q24.21) MUTATED	193	34	0.0 - 191.8 (19.3)
AMP PEAK 22(8Q24.21) WILD-TYPE	310	26	0.1 - 185.8 (24.5)

Figure S36. Get High-res Image Gene #22: 'amp_8q24.21' versus Clinical Feature #1: 'Time to Death'

'amp_8q24.21' versus 'HISTOLOGICAL.TYPE'

P value = 1e-05 (Fisher's exact test), Q value = 0.0067

Table S37. Gene #22: 'amp_8q24.21' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

nPatients	ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA	MIXED SEROUS AND ENDOMETRIOID	SEROUS ENDOMETRIAL ADENOCARCINOMA
ALL	380	21	104
AMP PEAK 22(8Q24.21) MUTATED	109	10	75
AMP PEAK 22(8Q24.21) WILD-TYPE	271	11	29

Figure S37. Get High-res Image Gene #22: 'amp_8q24.21' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

'amp_8q24.21' versus 'HISTOLOGICAL.TYPE'

P value = 1e-05 (Fisher's exact test), Q value = 0.0067

Table S38. Gene #23: 'amp_8q24.21' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

nPatients	ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA	MIXED SEROUS AND ENDOMETRIOID	SEROUS ENDOMETRIAL ADENOCARCINOMA
ALL	380	21	104
AMP PEAK 23(8Q24.21) MUTATED	112	9	79
AMP PEAK 23(8Q24.21) WILD-TYPE	268	12	25

Figure S38. Get High-res Image Gene #23: 'amp_8q24.21' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

'amp_9p24.2' versus 'HISTOLOGICAL.TYPE'

P value = 1e-05 (Fisher's exact test), Q value = 0.0067

Table S39. Gene #24: 'amp_9p24.2' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

nPatients	ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA	MIXED SEROUS AND ENDOMETRIOID	SEROUS ENDOMETRIAL ADENOCARCINOMA
ALL	380	21	104
AMP PEAK 24(9P24.2) MUTATED	23	3	35
AMP PEAK 24(9P24.2) WILD-TYPE	357	18	69

Figure S39. Get High-res Image Gene #24: 'amp_9p24.2' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

'amp_9q34.3' versus 'HISTOLOGICAL.TYPE'

P value = 1e-05 (Fisher's exact test), Q value = 0.0067

Table S40. Gene #25: 'amp_9q34.3' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

nPatients	ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA	MIXED SEROUS AND ENDOMETRIOID	SEROUS ENDOMETRIAL ADENOCARCINOMA
ALL	380	21	104
AMP PEAK 25(9Q34.3) MUTATED	12	4	21
AMP PEAK 25(9Q34.3) WILD-TYPE	368	17	83

Figure S40. Get High-res Image Gene #25: 'amp_9q34.3' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

'amp_11p11.2' versus 'AGE'

P value = 0.000132 (Wilcoxon-test), Q value = 0.074

Table S41. Gene #27: 'amp_11p11.2' versus Clinical Feature #2: 'AGE'

	nPatients	Mean (Std.Dev)
ALL	504	63.8 (11.2)
AMP PEAK 27(11P11.2) MUTATED	48	69.8 (9.6)
AMP PEAK 27(11P11.2) WILD-TYPE	456	63.2 (11.2)

Figure S41. Get High-res Image Gene #27: 'amp_11p11.2' versus Clinical Feature #2: 'AGE'

'amp_11p11.2' versus 'HISTOLOGICAL.TYPE'

P value = 1e-05 (Fisher's exact test), Q value = 0.0067

Table S42. Gene #27: 'amp_11p11.2' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

nPatients	ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA	MIXED SEROUS AND ENDOMETRIOID	SEROUS ENDOMETRIAL ADENOCARCINOMA
ALL	380	21	104
AMP PEAK 27(11P11.2) MUTATED	16	4	28
AMP PEAK 27(11P11.2) WILD-TYPE	364	17	76

Figure S42. Get High-res Image Gene #27: 'amp_11p11.2' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

'amp_11q13.2' versus 'HISTOLOGICAL.TYPE'

P value = 1e-05 (Fisher's exact test), Q value = 0.0067

Table S43. Gene #28: 'amp_11q13.2' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

nPatients	ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA	MIXED SEROUS AND ENDOMETRIOID	SEROUS ENDOMETRIAL ADENOCARCINOMA
ALL	380	21	104
AMP PEAK 28(11Q13.2) MUTATED	31	3	33
AMP PEAK 28(11Q13.2) WILD-TYPE	349	18	71

Figure S43. Get High-res Image Gene #28: 'amp_11q13.2' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

'amp_11q14.1' versus 'Time to Death'

P value = 0.000188 (logrank test), Q value = 0.1

Table S44. Gene #29: 'amp_11q14.1' versus Clinical Feature #1: 'Time to Death'

	nPatients	nDeath	Duration Range (Median), Month
ALL	503	60	0.0 - 191.8 (22.8)
AMP PEAK 29(11Q14.1) MUTATED	54	14	0.0 - 102.3 (19.3)
AMP PEAK 29(11Q14.1) WILD-TYPE	449	46	0.1 - 191.8 (23.3)

Figure S44. Get High-res Image Gene #29: 'amp_11q14.1' versus Clinical Feature #1: 'Time to Death'

'amp_11q14.1' versus 'HISTOLOGICAL.TYPE'

P value = 1e-05 (Fisher's exact test), Q value = 0.0067

Table S45. Gene #29: 'amp_11q14.1' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

nPatients	ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA	MIXED SEROUS AND ENDOMETRIOID	SEROUS ENDOMETRIAL ADENOCARCINOMA
ALL	380	21	104
AMP PEAK 29(11Q14.1) MUTATED	20	1	33
AMP PEAK 29(11Q14.1) WILD-TYPE	360	20	71

Figure S45. Get High-res Image Gene #29: 'amp_11q14.1' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

'amp_12p12.1' versus 'HISTOLOGICAL.TYPE'

P value = 1e-05 (Fisher's exact test), Q value = 0.0067

Table S46. Gene #30: 'amp_12p12.1' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

nPatients	ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA	MIXED SEROUS AND ENDOMETRIOID	SEROUS ENDOMETRIAL ADENOCARCINOMA
ALL	380	21	104
AMP PEAK 30(12P12.1) MUTATED	41	4	41
AMP PEAK 30(12P12.1) WILD-TYPE	339	17	63

Figure S46. Get High-res Image Gene #30: 'amp_12p12.1' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

'amp_12q13.11' versus 'HISTOLOGICAL.TYPE'

P value = 1e-05 (Fisher's exact test), Q value = 0.0067

Table S47. Gene #31: 'amp_12q13.11' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

nPatients	ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA	MIXED SEROUS AND ENDOMETRIOID	SEROUS ENDOMETRIAL ADENOCARCINOMA
ALL	380	21	104
AMP PEAK 31(12Q13.11) MUTATED	38	4	39
AMP PEAK 31(12Q13.11) WILD-TYPE	342	17	65

Figure S47. Get High-res Image Gene #31: 'amp_12q13.11' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

'amp_12q13.2' versus 'HISTOLOGICAL.TYPE'

P value = 1e-05 (Fisher's exact test), Q value = 0.0067

Table S48. Gene #32: 'amp_12q13.2' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

nPatients	ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA	MIXED SEROUS AND ENDOMETRIOID	SEROUS ENDOMETRIAL ADENOCARCINOMA
ALL	380	21	104
AMP PEAK 32(12Q13.2) MUTATED	47	4	41
AMP PEAK 32(12Q13.2) WILD-TYPE	333	17	63

Figure S48. Get High-res Image Gene #32: 'amp_12q13.2' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

'amp_13q34' versus 'AGE'

P value = 5.36e-05 (Wilcoxon-test), Q value = 0.031

Table S49. Gene #33: 'amp_13q34' versus Clinical Feature #2: 'AGE'

	nPatients	Mean (Std.Dev)
ALL	504	63.8 (11.2)
AMP PEAK 33(13Q34) MUTATED	56	69.1 (7.5)
AMP PEAK 33(13Q34) WILD-TYPE	448	63.2 (11.4)

Figure S49. Get High-res Image Gene #33: 'amp_13q34' versus Clinical Feature #2: 'AGE'

'amp_13q34' versus 'HISTOLOGICAL.TYPE'

P value = 1e-05 (Fisher's exact test), Q value = 0.0067

Table S50. Gene #33: 'amp_13q34' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

nPatients	ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA	MIXED SEROUS AND ENDOMETRIOID	SEROUS ENDOMETRIAL ADENOCARCINOMA
ALL	380	21	104
AMP PEAK 33(13Q34) MUTATED	14	4	38
AMP PEAK 33(13Q34) WILD-TYPE	366	17	66

Figure S50. Get High-res Image Gene #33: 'amp_13q34' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

'amp_14q24.3' versus 'HISTOLOGICAL.TYPE'

P value = 1e-05 (Fisher's exact test), Q value = 0.0067

Table S51. Gene #34: 'amp_14q24.3' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

nPatients	ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA	MIXED SEROUS AND ENDOMETRIOID	SEROUS ENDOMETRIAL ADENOCARCINOMA
ALL	380	21	104
AMP PEAK 34(14Q24.3) MUTATED	20	4	35
AMP PEAK 34(14Q24.3) WILD-TYPE	360	17	69

Figure S51. Get High-res Image Gene #34: 'amp_14q24.3' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

'amp_14q32.33' versus 'HISTOLOGICAL.TYPE'

P value = 1e-05 (Fisher's exact test), Q value = 0.0067

Table S52. Gene #35: 'amp_14q32.33' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

nPatients	ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA	MIXED SEROUS AND ENDOMETRIOID	SEROUS ENDOMETRIAL ADENOCARCINOMA
ALL	380	21	104
AMP PEAK 35(14Q32.33) MUTATED	29	5	38
AMP PEAK 35(14Q32.33) WILD-TYPE	351	16	66

Figure S52. Get High-res Image Gene #35: 'amp_14q32.33' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

'amp_15q26.3' versus 'HISTOLOGICAL.TYPE'

P value = 0.00015 (Fisher's exact test), Q value = 0.084

Table S53. Gene #36: 'amp_15q26.3' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

nPatients	ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA	MIXED SEROUS AND ENDOMETRIOID	SEROUS ENDOMETRIAL ADENOCARCINOMA
ALL	380	21	104
AMP PEAK 36(15Q26.3) MUTATED	17	1	18
AMP PEAK 36(15Q26.3) WILD-TYPE	363	20	86

Figure S53. Get High-res Image Gene #36: 'amp_15q26.3' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

'amp_16p11.2' versus 'AGE'

P value = 0.000351 (Wilcoxon-test), Q value = 0.19

Table S54. Gene #37: 'amp_16p11.2' versus Clinical Feature #2: 'AGE'

	nPatients	Mean (Std.Dev)
ALL	504	63.8 (11.2)
AMP PEAK 37(16P11.2) MUTATED	62	68.3 (9.0)
AMP PEAK 37(16P11.2) WILD-TYPE	442	63.2 (11.4)

Figure S54. Get High-res Image Gene #37: 'amp_16p11.2' versus Clinical Feature #2: 'AGE'

'amp_16p11.2' versus 'HISTOLOGICAL.TYPE'

P value = 1e-05 (Fisher's exact test), Q value = 0.0067

Table S55. Gene #37: 'amp_16p11.2' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

nPatients	ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA	MIXED SEROUS AND ENDOMETRIOID	SEROUS ENDOMETRIAL ADENOCARCINOMA
ALL	380	21	104
AMP PEAK 37(16P11.2) MUTATED	20	2	40
AMP PEAK 37(16P11.2) WILD-TYPE	360	19	64

Figure S55. Get High-res Image Gene #37: 'amp_16p11.2' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

'amp_17q11.2' versus 'HISTOLOGICAL.TYPE'

P value = 1e-05 (Fisher's exact test), Q value = 0.0067

Table S56. Gene #38: 'amp_17q11.2' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

nPatients	ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA	MIXED SEROUS AND ENDOMETRIOID	SEROUS ENDOMETRIAL ADENOCARCINOMA
ALL	380	21	104
AMP PEAK 38(17Q11.2) MUTATED	16	6	46
AMP PEAK 38(17Q11.2) WILD-TYPE	364	15	58

Figure S56. Get High-res Image Gene #38: 'amp_17q11.2' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

'amp_17q12' versus 'HISTOLOGICAL.TYPE'

P value = 1e-05 (Fisher's exact test), Q value = 0.0067

Table S57. Gene #39: 'amp_17q12' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

nPatients	ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA	MIXED SEROUS AND ENDOMETRIOID	SEROUS ENDOMETRIAL ADENOCARCINOMA
ALL	380	21	104
AMP PEAK 39(17Q12) MUTATED	18	3	48
AMP PEAK 39(17Q12) WILD-TYPE	362	18	56

Figure S57. Get High-res Image Gene #39: 'amp_17q12' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

'amp_17q25.1' versus 'HISTOLOGICAL.TYPE'

P value = 1e-05 (Fisher's exact test), Q value = 0.0067

Table S58. Gene #40: 'amp_17q25.1' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

nPatients	ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA	MIXED SEROUS AND ENDOMETRIOID	SEROUS ENDOMETRIAL ADENOCARCINOMA
ALL	380	21	104
AMP PEAK 40(17Q25.1) MUTATED	34	9	51
AMP PEAK 40(17Q25.1) WILD-TYPE	346	12	53

Figure S58. Get High-res Image Gene #40: 'amp_17q25.1' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

'amp_17q25.1' versus 'RACE'

P value = 1e-04 (Fisher's exact test), Q value = 0.057

Table S59. Gene #40: 'amp_17q25.1' versus Clinical Feature #6: 'RACE'

nPatients	AMERICAN INDIAN OR ALASKA NATIVE	ASIAN	BLACK OR AFRICAN AMERICAN	NATIVE HAWAIIAN OR OTHER PACIFIC ISLANDER	WHITE
ALL	4	19	90	9	357
AMP PEAK 40(17Q25.1) MUTATED	0	0	32	2	56
AMP PEAK 40(17Q25.1) WILD-TYPE	4	19	58	7	301

Figure S59. Get High-res Image Gene #40: 'amp_17q25.1' versus Clinical Feature #6: 'RACE'

'amp_18p11.31' versus 'AGE'

P value = 0.000121 (Wilcoxon-test), Q value = 0.068

Table S60. Gene #41: 'amp_18p11.31' versus Clinical Feature #2: 'AGE'

	nPatients	Mean (Std.Dev)
ALL	504	63.8 (11.2)
AMP PEAK 41(18P11.31) MUTATED	89	67.7 (9.1)
AMP PEAK 41(18P11.31) WILD-TYPE	415	63.0 (11.5)

Figure S60. Get High-res Image Gene #41: 'amp_18p11.31' versus Clinical Feature #2: 'AGE'

'amp_18p11.31' versus 'HISTOLOGICAL.TYPE'

P value = 1e-05 (Fisher's exact test), Q value = 0.0067

Table S61. Gene #41: 'amp_18p11.31' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

nPatients	ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA	MIXED SEROUS AND ENDOMETRIOID	SEROUS ENDOMETRIAL ADENOCARCINOMA
ALL	380	21	104
AMP PEAK 41(18P11.31) MUTATED	27	6	56
AMP PEAK 41(18P11.31) WILD-TYPE	353	15	48

Figure S61. Get High-res Image Gene #41: 'amp_18p11.31' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

'amp_18q11.2' versus 'HISTOLOGICAL.TYPE'

P value = 1e-05 (Fisher's exact test), Q value = 0.0067

Table S62. Gene #42: 'amp_18q11.2' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

nPatients	ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA	MIXED SEROUS AND ENDOMETRIOID	SEROUS ENDOMETRIAL ADENOCARCINOMA
ALL	380	21	104
AMP PEAK 42(18Q11.2) MUTATED	18	4	42
AMP PEAK 42(18Q11.2) WILD-TYPE	362	17	62

Figure S62. Get High-res Image Gene #42: 'amp_18q11.2' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

'amp_19p13.2' versus 'AGE'

P value = 4.21e-10 (Wilcoxon-test), Q value = 2.9e-07

Table S63. Gene #43: 'amp_19p13.2' versus Clinical Feature #2: 'AGE'

	nPatients	Mean (Std.Dev)
ALL	504	63.8 (11.2)
AMP PEAK 43(19P13.2) MUTATED	90	70.2 (8.6)
AMP PEAK 43(19P13.2) WILD-TYPE	414	62.5 (11.2)

Figure S63. Get High-res Image Gene #43: 'amp_19p13.2' versus Clinical Feature #2: 'AGE'

'amp_19p13.2' versus 'HISTOLOGICAL.TYPE'

P value = 1e-05 (Fisher's exact test), Q value = 0.0067

Table S64. Gene #43: 'amp_19p13.2' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

nPatients	ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA	MIXED SEROUS AND ENDOMETRIOID	SEROUS ENDOMETRIAL ADENOCARCINOMA
ALL	380	21	104
AMP PEAK 43(19P13.2) MUTATED	23	7	60
AMP PEAK 43(19P13.2) WILD-TYPE	357	14	44

Figure S64. Get High-res Image Gene #43: 'amp_19p13.2' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

'amp_19q12' versus 'Time to Death'

P value = 0.00023 (logrank test), Q value = 0.13

Table S65. Gene #44: 'amp_19q12' versus Clinical Feature #1: 'Time to Death'

	nPatients	nDeath	Duration Range (Median), Month
ALL	503	60	0.0 - 191.8 (22.8)
AMP PEAK 44(19Q12) MUTATED	106	22	0.0 - 125.4 (18.1)
AMP PEAK 44(19Q12) WILD-TYPE	397	38	0.1 - 191.8 (23.5)

Figure S65. Get High-res Image Gene #44: 'amp_19q12' versus Clinical Feature #1: 'Time to Death'

'amp_19q12' versus 'AGE'

P value = 3e-08 (Wilcoxon-test), Q value = 2.1e-05

Table S66. Gene #44: 'amp_19q12' versus Clinical Feature #2: 'AGE'

	nPatients	Mean (Std.Dev)
ALL	504	63.8 (11.2)
AMP PEAK 44(19Q12) MUTATED	106	68.8 (8.6)
AMP PEAK 44(19Q12) WILD-TYPE	398	62.5 (11.5)

Figure S66. Get High-res Image Gene #44: 'amp_19q12' versus Clinical Feature #2: 'AGE'

'amp_19q12' versus 'HISTOLOGICAL.TYPE'

P value = 1e-05 (Fisher's exact test), Q value = 0.0067

Table S67. Gene #44: 'amp_19q12' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

nPatients	ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA	MIXED SEROUS AND ENDOMETRIOID	SEROUS ENDOMETRIAL ADENOCARCINOMA
ALL	380	21	104
AMP PEAK 44(19Q12) MUTATED	25	10	71
AMP PEAK 44(19Q12) WILD-TYPE	355	11	33

Figure S67. Get High-res Image Gene #44: 'amp_19q12' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

'amp_19q12' versus 'RACE'

P value = 1e-05 (Fisher's exact test), Q value = 0.0067

Table S68. Gene #44: 'amp_19q12' versus Clinical Feature #6: 'RACE'

nPatients	AMERICAN INDIAN OR ALASKA NATIVE	ASIAN	BLACK OR AFRICAN AMERICAN	NATIVE HAWAIIAN OR OTHER PACIFIC ISLANDER	WHITE
ALL	4	19	90	9	357
AMP PEAK 44(19Q12) MUTATED	1	2	38	3	57
AMP PEAK 44(19Q12) WILD-TYPE	3	17	52	6	300

Figure S68. Get High-res Image Gene #44: 'amp_19q12' versus Clinical Feature #6: 'RACE'

'amp_20p13' versus 'AGE'

P value = 5.13e-06 (Wilcoxon-test), Q value = 0.0035

Table S69. Gene #45: 'amp_20p13' versus Clinical Feature #2: 'AGE'

	nPatients	Mean (Std.Dev)
ALL	504	63.8 (11.2)
AMP PEAK 45(20P13) MUTATED	110	67.7 (11.0)
AMP PEAK 45(20P13) WILD-TYPE	394	62.8 (11.1)

Figure S69. Get High-res Image Gene #45: 'amp_20p13' versus Clinical Feature #2: 'AGE'

'amp_20p13' versus 'HISTOLOGICAL.TYPE'

P value = 1e-05 (Fisher's exact test), Q value = 0.0067

Table S70. Gene #45: 'amp_20p13' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

nPatients	ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA	MIXED SEROUS AND ENDOMETRIOID	SEROUS ENDOMETRIAL ADENOCARCINOMA
ALL	380	21	104
AMP PEAK 45(20P13) MUTATED	50	5	55
AMP PEAK 45(20P13) WILD-TYPE	330	16	49

Figure S70. Get High-res Image Gene #45: 'amp_20p13' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

'amp_20q11.21' versus 'AGE'

P value = 7.39e-08 (Wilcoxon-test), Q value = 5.1e-05

Table S71. Gene #46: 'amp_20q11.21' versus Clinical Feature #2: 'AGE'

	nPatients	Mean (Std.Dev)
ALL	504	63.8 (11.2)
AMP PEAK 46(20Q11.21) MUTATED	140	67.9 (9.8)
AMP PEAK 46(20Q11.21) WILD-TYPE	364	62.3 (11.3)

Figure S71. Get High-res Image Gene #46: 'amp_20q11.21' versus Clinical Feature #2: 'AGE'

'amp_20q11.21' versus 'HISTOLOGICAL.TYPE'

P value = 1e-05 (Fisher's exact test), Q value = 0.0067

Table S72. Gene #46: 'amp_20q11.21' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

nPatients	ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA	MIXED SEROUS AND ENDOMETRIOID	SEROUS ENDOMETRIAL ADENOCARCINOMA
ALL	380	21	104
AMP PEAK 46(20Q11.21) MUTATED	58	6	76
AMP PEAK 46(20Q11.21) WILD-TYPE	322	15	28

Figure S72. Get High-res Image Gene #46: 'amp_20q11.21' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

'amp_20q13.12' versus 'AGE'

P value = 3.13e-08 (Wilcoxon-test), Q value = 2.2e-05

Table S73. Gene #47: 'amp_20q13.12' versus Clinical Feature #2: 'AGE'

	nPatients	Mean (Std.Dev)
ALL	504	63.8 (11.2)
AMP PEAK 47(20Q13.12) MUTATED	140	68.1 (10.1)
AMP PEAK 47(20Q13.12) WILD-TYPE	364	62.2 (11.2)

Figure S73. Get High-res Image Gene #47: 'amp_20q13.12' versus Clinical Feature #2: 'AGE'

'amp_20q13.12' versus 'HISTOLOGICAL.TYPE'

P value = 1e-05 (Fisher's exact test), Q value = 0.0067

Table S74. Gene #47: 'amp_20q13.12' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

nPatients	ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA	MIXED SEROUS AND ENDOMETRIOID	SEROUS ENDOMETRIAL ADENOCARCINOMA
ALL	380	21	104
AMP PEAK 47(20Q13.12) MUTATED	60	7	73
AMP PEAK 47(20Q13.12) WILD-TYPE	320	14	31

Figure S74. Get High-res Image Gene #47: 'amp_20q13.12' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

'amp_20q13.33' versus 'AGE'

P value = 4.38e-08 (Wilcoxon-test), Q value = 3e-05

Table S75. Gene #48: 'amp_20q13.33' versus Clinical Feature #2: 'AGE'

	nPatients	Mean (Std.Dev)
ALL	504	63.8 (11.2)
AMP PEAK 48(20Q13.33) MUTATED	138	68.1 (10.2)
AMP PEAK 48(20Q13.33) WILD-TYPE	366	62.2 (11.2)

Figure S75. Get High-res Image Gene #48: 'amp_20q13.33' versus Clinical Feature #2: 'AGE'

'amp_20q13.33' versus 'HISTOLOGICAL.TYPE'

P value = 1e-05 (Fisher's exact test), Q value = 0.0067

Table S76. Gene #48: 'amp_20q13.33' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

nPatients	ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA	MIXED SEROUS AND ENDOMETRIOID	SEROUS ENDOMETRIAL ADENOCARCINOMA
ALL	380	21	104
AMP PEAK 48(20Q13.33) MUTATED	61	6	71
AMP PEAK 48(20Q13.33) WILD-TYPE	319	15	33

Figure S76. Get High-res Image Gene #48: 'amp_20q13.33' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

'amp_22q12.2' versus 'HISTOLOGICAL.TYPE'

P value = 1e-05 (Fisher's exact test), Q value = 0.0067

Table S77. Gene #49: 'amp_22q12.2' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

nPatients	ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA	MIXED SEROUS AND ENDOMETRIOID	SEROUS ENDOMETRIAL ADENOCARCINOMA
ALL	380	21	104
AMP PEAK 49(22Q12.2) MUTATED	11	2	45
AMP PEAK 49(22Q12.2) WILD-TYPE	369	19	59

Figure S77. Get High-res Image Gene #49: 'amp_22q12.2' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

'del_1p36.21' versus 'AGE'

P value = 9.94e-05 (Wilcoxon-test), Q value = 0.056

Table S78. Gene #52: 'del_1p36.21' versus Clinical Feature #2: 'AGE'

	nPatients	Mean (Std.Dev)
ALL	504	63.8 (11.2)
DEL PEAK 1(1P36.21) MUTATED	64	69.4 (10.5)
DEL PEAK 1(1P36.21) WILD-TYPE	440	63.0 (11.1)

Figure S78. Get High-res Image Gene #52: 'del_1p36.21' versus Clinical Feature #2: 'AGE'

'del_1p36.21' versus 'HISTOLOGICAL.TYPE'

P value = 1e-05 (Fisher's exact test), Q value = 0.0067

Table S79. Gene #52: 'del_1p36.21' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

nPatients	ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA	MIXED SEROUS AND ENDOMETRIOID	SEROUS ENDOMETRIAL ADENOCARCINOMA
ALL	380	21	104
DEL PEAK 1(1P36.21) MUTATED	26	5	33
DEL PEAK 1(1P36.21) WILD-TYPE	354	16	71

Figure S79. Get High-res Image Gene #52: 'del_1p36.21' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

'del_1p36.11' versus 'AGE'

P value = 4.73e-05 (Wilcoxon-test), Q value = 0.027

Table S80. Gene #53: 'del_1p36.11' versus Clinical Feature #2: 'AGE'

	nPatients	Mean (Std.Dev)
ALL	504	63.8 (11.2)
DEL PEAK 2(1P36.11) MUTATED	74	68.9 (9.6)
DEL PEAK 2(1P36.11) WILD-TYPE	430	63.0 (11.3)

Figure S80. Get High-res Image Gene #53: 'del_1p36.11' versus Clinical Feature #2: 'AGE'

'del_1p36.11' versus 'HISTOLOGICAL.TYPE'

P value = 1e-05 (Fisher's exact test), Q value = 0.0067

Table S81. Gene #53: 'del_1p36.11' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

nPatients	ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA	MIXED SEROUS AND ENDOMETRIOID	SEROUS ENDOMETRIAL ADENOCARCINOMA
ALL	380	21	104
DEL PEAK 2(1P36.11) MUTATED	24	5	45
DEL PEAK 2(1P36.11) WILD-TYPE	356	16	59

Figure S81. Get High-res Image Gene #53: 'del_1p36.11' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

'del_2q22.1' versus 'Time to Death'

P value = 3.43e-09 (logrank test), Q value = 2.4e-06

Table S82. Gene #55: 'del_2q22.1' versus Clinical Feature #1: 'Time to Death'

	nPatients	nDeath	Duration Range (Median), Month
ALL	503	60	0.0 - 191.8 (22.8)
DEL PEAK 4(2Q22.1) MUTATED	44	15	0.5 - 125.4 (11.3)
DEL PEAK 4(2Q22.1) WILD-TYPE	459	45	0.0 - 191.8 (23.9)

Figure S82. Get High-res Image Gene #55: 'del_2q22.1' versus Clinical Feature #1: 'Time to Death'

'del_2q22.1' versus 'HISTOLOGICAL.TYPE'

P value = 1e-05 (Fisher's exact test), Q value = 0.0067

Table S83. Gene #55: 'del_2q22.1' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

nPatients	ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA	MIXED SEROUS AND ENDOMETRIOID	SEROUS ENDOMETRIAL ADENOCARCINOMA
ALL	380	21	104
DEL PEAK 4(2Q22.1) MUTATED	16	2	26
DEL PEAK 4(2Q22.1) WILD-TYPE	364	19	78

Figure S83. Get High-res Image Gene #55: 'del_2q22.1' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

'del_2q37.3' versus 'HISTOLOGICAL.TYPE'

P value = 0.00014 (Fisher's exact test), Q value = 0.079

Table S84. Gene #56: 'del_2q37.3' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

nPatients	ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA	MIXED SEROUS AND ENDOMETRIOID	SEROUS ENDOMETRIAL ADENOCARCINOMA
ALL	380	21	104
DEL PEAK 5(2Q37.3) MUTATED	25	2	22
DEL PEAK 5(2Q37.3) WILD-TYPE	355	19	82

Figure S84. Get High-res Image Gene #56: 'del_2q37.3' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

'del_3p14.2' versus 'HISTOLOGICAL.TYPE'

P value = 1e-05 (Fisher's exact test), Q value = 0.0067

Table S85. Gene #57: 'del_3p14.2' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

nPatients	ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA	MIXED SEROUS AND ENDOMETRIOID	SEROUS ENDOMETRIAL ADENOCARCINOMA
ALL	380	21	104
DEL PEAK 6(3P14.2) MUTATED	23	6	40
DEL PEAK 6(3P14.2) WILD-TYPE	357	15	64

Figure S85. Get High-res Image Gene #57: 'del_3p14.2' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

'del_3q13.31' versus 'HISTOLOGICAL.TYPE'

P value = 2e-05 (Fisher's exact test), Q value = 0.012

Table S86. Gene #58: 'del_3q13.31' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

nPatients	ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA	MIXED SEROUS AND ENDOMETRIOID	SEROUS ENDOMETRIAL ADENOCARCINOMA
ALL	380	21	104
DEL PEAK 7(3Q13.31) MUTATED	17	3	20
DEL PEAK 7(3Q13.31) WILD-TYPE	363	18	84

Figure S86. Get High-res Image Gene #58: 'del_3q13.31' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

'del_4p16.3' versus 'AGE'

P value = 0.000385 (Wilcoxon-test), Q value = 0.21

Table S87. Gene #59: 'del_4p16.3' versus Clinical Feature #2: 'AGE'

	nPatients	Mean (Std.Dev)
ALL	504	63.8 (11.2)
DEL PEAK 8(4P16.3) MUTATED	81	67.9 (9.1)
DEL PEAK 8(4P16.3) WILD-TYPE	423	63.1 (11.4)

Figure S87. Get High-res Image Gene #59: 'del_4p16.3' versus Clinical Feature #2: 'AGE'

'del_4p16.3' versus 'HISTOLOGICAL.TYPE'

P value = 1e-05 (Fisher's exact test), Q value = 0.0067

Table S88. Gene #59: 'del_4p16.3' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

nPatients	ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA	MIXED SEROUS AND ENDOMETRIOID	SEROUS ENDOMETRIAL ADENOCARCINOMA
ALL	380	21	104
DEL PEAK 8(4P16.3) MUTATED	28	5	48
DEL PEAK 8(4P16.3) WILD-TYPE	352	16	56

Figure S88. Get High-res Image Gene #59: 'del_4p16.3' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

'del_4p15.2' versus 'AGE'

P value = 0.000164 (Wilcoxon-test), Q value = 0.092

Table S89. Gene #60: 'del_4p15.2' versus Clinical Feature #2: 'AGE'

	nPatients	Mean (Std.Dev)
ALL	504	63.8 (11.2)
DEL PEAK 9(4P15.2) MUTATED	83	68.1 (9.2)
DEL PEAK 9(4P15.2) WILD-TYPE	421	63.0 (11.4)

Figure S89. Get High-res Image Gene #60: 'del_4p15.2' versus Clinical Feature #2: 'AGE'

'del_4p15.2' versus 'HISTOLOGICAL.TYPE'

P value = 1e-05 (Fisher's exact test), Q value = 0.0067

Table S90. Gene #60: 'del_4p15.2' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

nPatients	ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA	MIXED SEROUS AND ENDOMETRIOID	SEROUS ENDOMETRIAL ADENOCARCINOMA
ALL	380	21	104
DEL PEAK 9(4P15.2) MUTATED	29	5	49
DEL PEAK 9(4P15.2) WILD-TYPE	351	16	55

Figure S90. Get High-res Image Gene #60: 'del_4p15.2' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

'del_4q22.1' versus 'AGE'

P value = 4.13e-06 (Wilcoxon-test), Q value = 0.0028

Table S91. Gene #61: 'del_4q22.1' versus Clinical Feature #2: 'AGE'

	nPatients	Mean (Std.Dev)
ALL	504	63.8 (11.2)
DEL PEAK 10(4Q22.1) MUTATED	94	68.5 (9.1)
DEL PEAK 10(4Q22.1) WILD-TYPE	410	62.8 (11.4)

Figure S91. Get High-res Image Gene #61: 'del_4q22.1' versus Clinical Feature #2: 'AGE'

'del_4q22.1' versus 'HISTOLOGICAL.TYPE'

P value = 1e-05 (Fisher's exact test), Q value = 0.0067

Table S92. Gene #61: 'del_4q22.1' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

nPatients	ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA	MIXED SEROUS AND ENDOMETRIOID	SEROUS ENDOMETRIAL ADENOCARCINOMA
ALL	380	21	104
DEL PEAK 10(4Q22.1) MUTATED	28	6	60
DEL PEAK 10(4Q22.1) WILD-TYPE	352	15	44

Figure S92. Get High-res Image Gene #61: 'del_4q22.1' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

'del_4q34.3' versus 'AGE'

P value = 5.71e-07 (Wilcoxon-test), Q value = 0.00039

Table S93. Gene #62: 'del_4q34.3' versus Clinical Feature #2: 'AGE'

	nPatients	Mean (Std.Dev)
ALL	504	63.8 (11.2)
DEL PEAK 11(4Q34.3) MUTATED	120	68.0 (9.9)
DEL PEAK 11(4Q34.3) WILD-TYPE	384	62.5 (11.3)

Figure S93. Get High-res Image Gene #62: 'del_4q34.3' versus Clinical Feature #2: 'AGE'

'del_4q34.3' versus 'HISTOLOGICAL.TYPE'

P value = 1e-05 (Fisher's exact test), Q value = 0.0067

Table S94. Gene #62: 'del_4q34.3' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

nPatients	ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA	MIXED SEROUS AND ENDOMETRIOID	SEROUS ENDOMETRIAL ADENOCARCINOMA
ALL	380	21	104
DEL PEAK 11(4Q34.3) MUTATED	41	8	71
DEL PEAK 11(4Q34.3) WILD-TYPE	339	13	33

Figure S94. Get High-res Image Gene #62: 'del_4q34.3' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

'del_5q12.1' versus 'AGE'

P value = 1.22e-05 (Wilcoxon-test), Q value = 0.0071

Table S95. Gene #63: 'del_5q12.1' versus Clinical Feature #2: 'AGE'

	nPatients	Mean (Std.Dev)
ALL	504	63.8 (11.2)
DEL PEAK 12(5Q12.1) MUTATED	101	67.7 (9.8)
DEL PEAK 12(5Q12.1) WILD-TYPE	403	62.9 (11.4)

Figure S95. Get High-res Image Gene #63: 'del_5q12.1' versus Clinical Feature #2: 'AGE'

'del_5q12.1' versus 'HISTOLOGICAL.TYPE'

P value = 1e-05 (Fisher's exact test), Q value = 0.0067

Table S96. Gene #63: 'del_5q12.1' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

nPatients	ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA	MIXED SEROUS AND ENDOMETRIOID	SEROUS ENDOMETRIAL ADENOCARCINOMA
ALL	380	21	104
DEL PEAK 12(5Q12.1) MUTATED	32	4	65
DEL PEAK 12(5Q12.1) WILD-TYPE	348	17	39

Figure S96. Get High-res Image Gene #63: 'del_5q12.1' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

'del_6q26' versus 'HISTOLOGICAL.TYPE'

P value = 1e-05 (Fisher's exact test), Q value = 0.0067

Table S97. Gene #64: 'del_6q26' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

nPatients	ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA	MIXED SEROUS AND ENDOMETRIOID	SEROUS ENDOMETRIAL ADENOCARCINOMA
ALL	380	21	104
DEL PEAK 13(6Q26) MUTATED	12	3	28
DEL PEAK 13(6Q26) WILD-TYPE	368	18	76

Figure S97. Get High-res Image Gene #64: 'del_6q26' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

'del_7p22.3' versus 'AGE'

P value = 0.000132 (Wilcoxon-test), Q value = 0.074

Table S98. Gene #65: 'del_7p22.3' versus Clinical Feature #2: 'AGE'

	nPatients	Mean (Std.Dev)
ALL	504	63.8 (11.2)
DEL PEAK 14(7P22.3) MUTATED	66	68.5 (10.1)
DEL PEAK 14(7P22.3) WILD-TYPE	438	63.1 (11.2)

Figure S98. Get High-res Image Gene #65: 'del_7p22.3' versus Clinical Feature #2: 'AGE'

'del_7p22.3' versus 'HISTOLOGICAL.TYPE'

P value = 1e-05 (Fisher's exact test), Q value = 0.0067

Table S99. Gene #65: 'del_7p22.3' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

nPatients	ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA	MIXED SEROUS AND ENDOMETRIOID	SEROUS ENDOMETRIAL ADENOCARCINOMA
ALL	380	21	104
DEL PEAK 14(7P22.3) MUTATED	21	5	41
DEL PEAK 14(7P22.3) WILD-TYPE	359	16	63

Figure S99. Get High-res Image Gene #65: 'del_7p22.3' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

'del_7q11.22' versus 'AGE'

P value = 3.18e-05 (Wilcoxon-test), Q value = 0.018

Table S100. Gene #66: 'del_7q11.22' versus Clinical Feature #2: 'AGE'

	nPatients	Mean (Std.Dev)
ALL	504	63.8 (11.2)
DEL PEAK 15(7Q11.22) MUTATED	39	70.7 (9.8)
DEL PEAK 15(7Q11.22) WILD-TYPE	465	63.3 (11.2)

Figure S100. Get High-res Image Gene #66: 'del_7q11.22' versus Clinical Feature #2: 'AGE'

'del_7q11.22' versus 'HISTOLOGICAL.TYPE'

P value = 1e-05 (Fisher's exact test), Q value = 0.0067

Table S101. Gene #66: 'del_7q11.22' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

nPatients	ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA	MIXED SEROUS AND ENDOMETRIOID	SEROUS ENDOMETRIAL ADENOCARCINOMA
ALL	380	21	104
DEL PEAK 15(7Q11.22) MUTATED	13	2	24
DEL PEAK 15(7Q11.22) WILD-TYPE	367	19	80

Figure S101. Get High-res Image Gene #66: 'del_7q11.22' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

'del_7q31.1' versus 'AGE'

P value = 4.75e-05 (Wilcoxon-test), Q value = 0.027

Table S102. Gene #67: 'del_7q31.1' versus Clinical Feature #2: 'AGE'

	nPatients	Mean (Std.Dev)
ALL	504	63.8 (11.2)
DEL PEAK 16(7Q31.1) MUTATED	52	69.4 (7.9)
DEL PEAK 16(7Q31.1) WILD-TYPE	452	63.2 (11.4)

Figure S102. Get High-res Image Gene #67: 'del_7q31.1' versus Clinical Feature #2: 'AGE'

'del_7q31.1' versus 'HISTOLOGICAL.TYPE'

P value = 1e-05 (Fisher's exact test), Q value = 0.0067

Table S103. Gene #67: 'del_7q31.1' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

nPatients	ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA	MIXED SEROUS AND ENDOMETRIOID	SEROUS ENDOMETRIAL ADENOCARCINOMA
ALL	380	21	104
DEL PEAK 16(7Q31.1) MUTATED	9	3	40
DEL PEAK 16(7Q31.1) WILD-TYPE	371	18	64

Figure S103. Get High-res Image Gene #67: 'del_7q31.1' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

'del_7q36.1' versus 'AGE'

P value = 2.17e-07 (Wilcoxon-test), Q value = 0.00015

Table S104. Gene #68: 'del_7q36.1' versus Clinical Feature #2: 'AGE'

	nPatients	Mean (Std.Dev)
ALL	504	63.8 (11.2)
DEL PEAK 17(7Q36.1) MUTATED	61	70.6 (8.6)
DEL PEAK 17(7Q36.1) WILD-TYPE	443	62.9 (11.2)

Figure S104. Get High-res Image Gene #68: 'del_7q36.1' versus Clinical Feature #2: 'AGE'

'del_7q36.1' versus 'HISTOLOGICAL.TYPE'

P value = 1e-05 (Fisher's exact test), Q value = 0.0067

Table S105. Gene #68: 'del_7q36.1' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

nPatients	ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA	MIXED SEROUS AND ENDOMETRIOID	SEROUS ENDOMETRIAL ADENOCARCINOMA
ALL	380	21	104
DEL PEAK 17(7Q36.1) MUTATED	12	4	45
DEL PEAK 17(7Q36.1) WILD-TYPE	368	17	59

Figure S105. Get High-res Image Gene #68: 'del_7q36.1' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

'del_8p23.2' versus 'AGE'

P value = 3.52e-05 (Wilcoxon-test), Q value = 0.02

Table S106. Gene #69: 'del_8p23.2' versus Clinical Feature #2: 'AGE'

	nPatients	Mean (Std.Dev)
ALL	504	63.8 (11.2)
DEL PEAK 18(8P23.2) MUTATED	105	67.4 (9.3)
DEL PEAK 18(8P23.2) WILD-TYPE	399	62.9 (11.5)

Figure S106. Get High-res Image Gene #69: 'del_8p23.2' versus Clinical Feature #2: 'AGE'

'del_8p23.2' versus 'HISTOLOGICAL.TYPE'

P value = 1e-05 (Fisher's exact test), Q value = 0.0067

Table S107. Gene #69: 'del_8p23.2' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

nPatients	ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA	MIXED SEROUS AND ENDOMETRIOID	SEROUS ENDOMETRIAL ADENOCARCINOMA
ALL	380	21	104
DEL PEAK 18(8P23.2) MUTATED	31	5	70
DEL PEAK 18(8P23.2) WILD-TYPE	349	16	34

Figure S107. Get High-res Image Gene #69: 'del_8p23.2' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

'del_8p21.2' versus 'AGE'

P value = 4.25e-06 (Wilcoxon-test), Q value = 0.0029

Table S108. Gene #70: 'del_8p21.2' versus Clinical Feature #2: 'AGE'

	nPatients	Mean (Std.Dev)
ALL	504	63.8 (11.2)
DEL PEAK 19(8P21.2) MUTATED	104	68.0 (9.2)
DEL PEAK 19(8P21.2) WILD-TYPE	400	62.8 (11.5)

Figure S108. Get High-res Image Gene #70: 'del_8p21.2' versus Clinical Feature #2: 'AGE'

'del_8p21.2' versus 'HISTOLOGICAL.TYPE'

P value = 1e-05 (Fisher's exact test), Q value = 0.0067

Table S109. Gene #70: 'del_8p21.2' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

nPatients	ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA	MIXED SEROUS AND ENDOMETRIOID	SEROUS ENDOMETRIAL ADENOCARCINOMA
ALL	380	21	104
DEL PEAK 19(8P21.2) MUTATED	23	6	75
DEL PEAK 19(8P21.2) WILD-TYPE	357	15	29

Figure S109. Get High-res Image Gene #70: 'del_8p21.2' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

'del_9p23' versus 'HISTOLOGICAL.TYPE'

P value = 1e-05 (Fisher's exact test), Q value = 0.0067

Table S110. Gene #71: 'del_9p23' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

nPatients	ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA	MIXED SEROUS AND ENDOMETRIOID	SEROUS ENDOMETRIAL ADENOCARCINOMA
ALL	380	21	104
DEL PEAK 20(9P23) MUTATED	27	4	39
DEL PEAK 20(9P23) WILD-TYPE	353	17	65

Figure S110. Get High-res Image Gene #71: 'del_9p23' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

'del_9q21.2' versus 'AGE'

P value = 5.62e-10 (Wilcoxon-test), Q value = 3.9e-07

Table S111. Gene #72: 'del_9q21.2' versus Clinical Feature #2: 'AGE'

	nPatients	Mean (Std.Dev)
ALL	504	63.8 (11.2)
DEL PEAK 21(9Q21.2) MUTATED	117	69.2 (9.0)
DEL PEAK 21(9Q21.2) WILD-TYPE	387	62.2 (11.3)

Figure S111. Get High-res Image Gene #72: 'del_9q21.2' versus Clinical Feature #2: 'AGE'

'del_9q21.2' versus 'HISTOLOGICAL.TYPE'

P value = 1e-05 (Fisher's exact test), Q value = 0.0067

Table S112. Gene #72: 'del_9q21.2' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

nPatients	ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA	MIXED SEROUS AND ENDOMETRIOID	SEROUS ENDOMETRIAL ADENOCARCINOMA
ALL	380	21	104
DEL PEAK 21(9Q21.2) MUTATED	46	10	61
DEL PEAK 21(9Q21.2) WILD-TYPE	334	11	43

Figure S112. Get High-res Image Gene #72: 'del_9q21.2' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

'del_9q34.2' versus 'AGE'

P value = 3.56e-08 (Wilcoxon-test), Q value = 2.5e-05

Table S113. Gene #73: 'del_9q34.2' versus Clinical Feature #2: 'AGE'

	nPatients	Mean (Std.Dev)
ALL	504	63.8 (11.2)
DEL PEAK 22(9Q34.2) MUTATED	119	68.5 (8.6)
DEL PEAK 22(9Q34.2) WILD-TYPE	385	62.4 (11.5)

Figure S113. Get High-res Image Gene #73: 'del_9q34.2' versus Clinical Feature #2: 'AGE'

'del_9q34.2' versus 'HISTOLOGICAL.TYPE'

P value = 1e-05 (Fisher's exact test), Q value = 0.0067

Table S114. Gene #73: 'del_9q34.2' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

nPatients	ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA	MIXED SEROUS AND ENDOMETRIOID	SEROUS ENDOMETRIAL ADENOCARCINOMA
ALL	380	21	104
DEL PEAK 22(9Q34.2) MUTATED	49	10	60
DEL PEAK 22(9Q34.2) WILD-TYPE	331	11	44

Figure S114. Get High-res Image Gene #73: 'del_9q34.2' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

'del_10q23.31' versus 'HISTOLOGICAL.TYPE'

P value = 1e-05 (Fisher's exact test), Q value = 0.0067

Table S115. Gene #74: 'del_10q23.31' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

nPatients	ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA	MIXED SEROUS AND ENDOMETRIOID	SEROUS ENDOMETRIAL ADENOCARCINOMA
ALL	380	21	104
DEL PEAK 23(10Q23.31) MUTATED	29	5	34
DEL PEAK 23(10Q23.31) WILD-TYPE	351	16	70

Figure S115. Get High-res Image Gene #74: 'del_10q23.31' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

'del_11p15.5' versus 'AGE'

P value = 9.43e-06 (Wilcoxon-test), Q value = 0.0063

Table S116. Gene #75: 'del_11p15.5' versus Clinical Feature #2: 'AGE'

	nPatients	Mean (Std.Dev)
ALL	504	63.8 (11.2)
DEL PEAK 24(11P15.5) MUTATED	94	68.2 (9.1)
DEL PEAK 24(11P15.5) WILD-TYPE	410	62.8 (11.4)

Figure S116. Get High-res Image Gene #75: 'del_11p15.5' versus Clinical Feature #2: 'AGE'

'del_11p15.5' versus 'HISTOLOGICAL.TYPE'

P value = 1e-05 (Fisher's exact test), Q value = 0.0067

Table S117. Gene #75: 'del_11p15.5' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

nPatients	ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA	MIXED SEROUS AND ENDOMETRIOID	SEROUS ENDOMETRIAL ADENOCARCINOMA
ALL	380	21	104
DEL PEAK 24(11P15.5) MUTATED	32	5	57
DEL PEAK 24(11P15.5) WILD-TYPE	348	16	47

Figure S117. Get High-res Image Gene #75: 'del_11p15.5' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

'del_11q14.1' versus 'AGE'

P value = 0.000357 (Wilcoxon-test), Q value = 0.19

Table S118. Gene #76: 'del_11q14.1' versus Clinical Feature #2: 'AGE'

	nPatients	Mean (Std.Dev)
ALL	504	63.8 (11.2)
DEL PEAK 25(11Q14.1) MUTATED	64	68.6 (9.1)
DEL PEAK 25(11Q14.1) WILD-TYPE	440	63.1 (11.3)

Figure S118. Get High-res Image Gene #76: 'del_11q14.1' versus Clinical Feature #2: 'AGE'

'del_11q14.1' versus 'HISTOLOGICAL.TYPE'

P value = 1e-05 (Fisher's exact test), Q value = 0.0067

Table S119. Gene #76: 'del_11q14.1' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

nPatients	ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA	MIXED SEROUS AND ENDOMETRIOID	SEROUS ENDOMETRIAL ADENOCARCINOMA
ALL	380	21	104
DEL PEAK 25(11Q14.1) MUTATED	20	6	38
DEL PEAK 25(11Q14.1) WILD-TYPE	360	15	66

Figure S119. Get High-res Image Gene #76: 'del_11q14.1' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

'del_11q25' versus 'AGE'

P value = 0.000283 (Wilcoxon-test), Q value = 0.16

Table S120. Gene #77: 'del_11q25' versus Clinical Feature #2: 'AGE'

	nPatients	Mean (Std.Dev)
ALL	504	63.8 (11.2)
DEL PEAK 26(11Q25) MUTATED	86	67.5 (10.0)
DEL PEAK 26(11Q25) WILD-TYPE	418	63.1 (11.3)

Figure S120. Get High-res Image Gene #77: 'del_11q25' versus Clinical Feature #2: 'AGE'

'del_11q25' versus 'HISTOLOGICAL.TYPE'

P value = 1e-05 (Fisher's exact test), Q value = 0.0067

Table S121. Gene #77: 'del_11q25' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

nPatients	ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA	MIXED SEROUS AND ENDOMETRIOID	SEROUS ENDOMETRIAL ADENOCARCINOMA
ALL	380	21	104
DEL PEAK 26(11Q25) MUTATED	31	6	49
DEL PEAK 26(11Q25) WILD-TYPE	349	15	55

Figure S121. Get High-res Image Gene #77: 'del_11q25' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

'del_12q23.1' versus 'HISTOLOGICAL.TYPE'

P value = 1e-05 (Fisher's exact test), Q value = 0.0067

Table S122. Gene #78: 'del_12q23.1' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

nPatients	ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA	MIXED SEROUS AND ENDOMETRIOID	SEROUS ENDOMETRIAL ADENOCARCINOMA
ALL	380	21	104
DEL PEAK 27(12Q23.1) MUTATED	11	3	32
DEL PEAK 27(12Q23.1) WILD-TYPE	369	18	72

Figure S122. Get High-res Image Gene #78: 'del_12q23.1' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

'del_12q24.33' versus 'AGE'

P value = 3.82e-05 (Wilcoxon-test), Q value = 0.022

Table S123. Gene #79: 'del_12q24.33' versus Clinical Feature #2: 'AGE'

	nPatients	Mean (Std.Dev)
ALL	504	63.8 (11.2)
DEL PEAK 28(12Q24.33) MUTATED	56	69.4 (9.1)
DEL PEAK 28(12Q24.33) WILD-TYPE	448	63.1 (11.3)

Figure S123. Get High-res Image Gene #79: 'del_12q24.33' versus Clinical Feature #2: 'AGE'

'del_12q24.33' versus 'HISTOLOGICAL.TYPE'

P value = 1e-05 (Fisher's exact test), Q value = 0.0067

Table S124. Gene #79: 'del_12q24.33' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

nPatients	ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA	MIXED SEROUS AND ENDOMETRIOID	SEROUS ENDOMETRIAL ADENOCARCINOMA
ALL	380	21	104
DEL PEAK 28(12Q24.33) MUTATED	16	2	38
DEL PEAK 28(12Q24.33) WILD-TYPE	364	19	66

Figure S124. Get High-res Image Gene #79: 'del_12q24.33' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

'del_13q11' versus 'HISTOLOGICAL.TYPE'

P value = 1e-05 (Fisher's exact test), Q value = 0.0067

Table S125. Gene #80: 'del_13q11' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

nPatients	ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA	MIXED SEROUS AND ENDOMETRIOID	SEROUS ENDOMETRIAL ADENOCARCINOMA
ALL	380	21	104
DEL PEAK 29(13Q11) MUTATED	36	5	45
DEL PEAK 29(13Q11) WILD-TYPE	344	16	59

Figure S125. Get High-res Image Gene #80: 'del_13q11' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

'del_13q14.2' versus 'HISTOLOGICAL.TYPE'

P value = 1e-05 (Fisher's exact test), Q value = 0.0067

Table S126. Gene #81: 'del_13q14.2' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

nPatients	ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA	MIXED SEROUS AND ENDOMETRIOID	SEROUS ENDOMETRIAL ADENOCARCINOMA
ALL	380	21	104
DEL PEAK 30(13Q14.2) MUTATED	48	6	39
DEL PEAK 30(13Q14.2) WILD-TYPE	332	15	65

Figure S126. Get High-res Image Gene #81: 'del_13q14.2' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

'del_14q13.1' versus 'HISTOLOGICAL.TYPE'

P value = 1e-05 (Fisher's exact test), Q value = 0.0067

Table S127. Gene #82: 'del_14q13.1' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

nPatients	ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA	MIXED SEROUS AND ENDOMETRIOID	SEROUS ENDOMETRIAL ADENOCARCINOMA
ALL	380	21	104
DEL PEAK 31(14Q13.1) MUTATED	24	5	38
DEL PEAK 31(14Q13.1) WILD-TYPE	356	16	66

Figure S127. Get High-res Image Gene #82: 'del_14q13.1' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

'del_15q15.1' versus 'AGE'

P value = 4.08e-08 (Wilcoxon-test), Q value = 2.8e-05

Table S128. Gene #83: 'del_15q15.1' versus Clinical Feature #2: 'AGE'

	nPatients	Mean (Std.Dev)
ALL	504	63.8 (11.2)
DEL PEAK 32(15Q15.1) MUTATED	128	68.3 (9.7)
DEL PEAK 32(15Q15.1) WILD-TYPE	376	62.3 (11.3)

Figure S128. Get High-res Image Gene #83: 'del_15q15.1' versus Clinical Feature #2: 'AGE'

'del_15q15.1' versus 'HISTOLOGICAL.TYPE'

P value = 1e-05 (Fisher's exact test), Q value = 0.0067

Table S129. Gene #83: 'del_15q15.1' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

nPatients	ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA	MIXED SEROUS AND ENDOMETRIOID	SEROUS ENDOMETRIAL ADENOCARCINOMA
ALL	380	21	104
DEL PEAK 32(15Q15.1) MUTATED	49	9	70
DEL PEAK 32(15Q15.1) WILD-TYPE	331	12	34

Figure S129. Get High-res Image Gene #83: 'del_15q15.1' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

'del_15q23' versus 'AGE'

P value = 1.23e-05 (Wilcoxon-test), Q value = 0.0071

Table S130. Gene #84: 'del_15q23' versus Clinical Feature #2: 'AGE'

	nPatients	Mean (Std.Dev)
ALL	504	63.8 (11.2)
DEL PEAK 33(15Q23) MUTATED	107	67.6 (9.5)
DEL PEAK 33(15Q23) WILD-TYPE	397	62.8 (11.4)

Figure S130. Get High-res Image Gene #84: 'del_15q23' versus Clinical Feature #2: 'AGE'

'del_15q23' versus 'HISTOLOGICAL.TYPE'

P value = 1e-05 (Fisher's exact test), Q value = 0.0067

Table S131. Gene #84: 'del_15q23' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

nPatients	ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA	MIXED SEROUS AND ENDOMETRIOID	SEROUS ENDOMETRIAL ADENOCARCINOMA
ALL	380	21	104
DEL PEAK 33(15Q23) MUTATED	37	7	63
DEL PEAK 33(15Q23) WILD-TYPE	343	14	41

Figure S131. Get High-res Image Gene #84: 'del_15q23' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

'del_16p13.3' versus 'AGE'

P value = 1.33e-06 (Wilcoxon-test), Q value = 9e-04

Table S132. Gene #85: 'del_16p13.3' versus Clinical Feature #2: 'AGE'

	nPatients	Mean (Std.Dev)
ALL	504	63.8 (11.2)
DEL PEAK 34(16P13.3) MUTATED	83	69.0 (8.6)
DEL PEAK 34(16P13.3) WILD-TYPE	421	62.8 (11.4)

Figure S132. Get High-res Image Gene #85: 'del_16p13.3' versus Clinical Feature #2: 'AGE'

'del_16p13.3' versus 'HISTOLOGICAL.TYPE'

P value = 1e-05 (Fisher's exact test), Q value = 0.0067

Table S133. Gene #85: 'del_16p13.3' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

nPatients	ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA	MIXED SEROUS AND ENDOMETRIOID	SEROUS ENDOMETRIAL ADENOCARCINOMA
ALL	380	21	104
DEL PEAK 34(16P13.3) MUTATED	24	5	54
DEL PEAK 34(16P13.3) WILD-TYPE	356	16	50

Figure S133. Get High-res Image Gene #85: 'del_16p13.3' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

'del_16q21' versus 'AGE'

P value = 2.59e-08 (Wilcoxon-test), Q value = 1.8e-05

Table S134. Gene #86: 'del_16q21' versus Clinical Feature #2: 'AGE'

	nPatients	Mean (Std.Dev)
ALL	504	63.8 (11.2)
DEL PEAK 35(16Q21) MUTATED	141	68.0 (9.2)
DEL PEAK 35(16Q21) WILD-TYPE	363	62.2 (11.5)

Figure S134. Get High-res Image Gene #86: 'del_16q21' versus Clinical Feature #2: 'AGE'

'del_16q21' versus 'HISTOLOGICAL.TYPE'

P value = 1e-05 (Fisher's exact test), Q value = 0.0067

Table S135. Gene #86: 'del_16q21' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

nPatients	ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA	MIXED SEROUS AND ENDOMETRIOID	SEROUS ENDOMETRIAL ADENOCARCINOMA
ALL	380	21	104
DEL PEAK 35(16Q21) MUTATED	59	8	74
DEL PEAK 35(16Q21) WILD-TYPE	321	13	30

Figure S135. Get High-res Image Gene #86: 'del_16q21' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

'del_16q22.3' versus 'AGE'

P value = 1.78e-08 (Wilcoxon-test), Q value = 1.2e-05

Table S136. Gene #87: 'del_16q22.3' versus Clinical Feature #2: 'AGE'

	nPatients	Mean (Std.Dev)
ALL	504	63.8 (11.2)
DEL PEAK 36(16Q22.3) MUTATED	144	67.9 (9.0)
DEL PEAK 36(16Q22.3) WILD-TYPE	360	62.2 (11.6)

Figure S136. Get High-res Image Gene #87: 'del_16q22.3' versus Clinical Feature #2: 'AGE'

'del_16q22.3' versus 'HISTOLOGICAL.TYPE'

P value = 1e-05 (Fisher's exact test), Q value = 0.0067

Table S137. Gene #87: 'del_16q22.3' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

nPatients	ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA	MIXED SEROUS AND ENDOMETRIOID	SEROUS ENDOMETRIAL ADENOCARCINOMA
ALL	380	21	104
DEL PEAK 36(16Q22.3) MUTATED	63	8	73
DEL PEAK 36(16Q22.3) WILD-TYPE	317	13	31

Figure S137. Get High-res Image Gene #87: 'del_16q22.3' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

'del_16q23.1' versus 'AGE'

P value = 2.47e-08 (Wilcoxon-test), Q value = 1.7e-05

Table S138. Gene #88: 'del_16q23.1' versus Clinical Feature #2: 'AGE'

	nPatients	Mean (Std.Dev)
ALL	504	63.8 (11.2)
DEL PEAK 37(16Q23.1) MUTATED	152	67.7 (9.4)
DEL PEAK 37(16Q23.1) WILD-TYPE	352	62.2 (11.5)

Figure S138. Get High-res Image Gene #88: 'del_16q23.1' versus Clinical Feature #2: 'AGE'

'del_16q23.1' versus 'HISTOLOGICAL.TYPE'

P value = 1e-05 (Fisher's exact test), Q value = 0.0067

Table S139. Gene #88: 'del_16q23.1' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

nPatients	ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA	MIXED SEROUS AND ENDOMETRIOID	SEROUS ENDOMETRIAL ADENOCARCINOMA
ALL	380	21	104
DEL PEAK 37(16Q23.1) MUTATED	65	7	80
DEL PEAK 37(16Q23.1) WILD-TYPE	315	14	24

Figure S139. Get High-res Image Gene #88: 'del_16q23.1' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

'del_17p13.3' versus 'AGE'

P value = 0.000294 (Wilcoxon-test), Q value = 0.16

Table S140. Gene #89: 'del_17p13.3' versus Clinical Feature #2: 'AGE'

	nPatients	Mean (Std.Dev)
ALL	504	63.8 (11.2)
DEL PEAK 38(17P13.3) MUTATED	110	66.9 (9.1)
DEL PEAK 38(17P13.3) WILD-TYPE	394	63.0 (11.6)

Figure S140. Get High-res Image Gene #89: 'del_17p13.3' versus Clinical Feature #2: 'AGE'

'del_17p13.3' versus 'HISTOLOGICAL.TYPE'

P value = 1e-05 (Fisher's exact test), Q value = 0.0067

Table S141. Gene #89: 'del_17p13.3' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

nPatients	ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA	MIXED SEROUS AND ENDOMETRIOID	SEROUS ENDOMETRIAL ADENOCARCINOMA
ALL	380	21	104
DEL PEAK 38(17P13.3) MUTATED	42	9	59
DEL PEAK 38(17P13.3) WILD-TYPE	338	12	45

Figure S141. Get High-res Image Gene #89: 'del_17p13.3' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

'del_17p11.2' versus 'AGE'

P value = 5.37e-06 (Wilcoxon-test), Q value = 0.0036

Table S142. Gene #90: 'del_17p11.2' versus Clinical Feature #2: 'AGE'

	nPatients	Mean (Std.Dev)
ALL	504	63.8 (11.2)
DEL PEAK 39(17P11.2) MUTATED	115	67.7 (9.4)
DEL PEAK 39(17P11.2) WILD-TYPE	389	62.7 (11.5)

Figure S142. Get High-res Image Gene #90: 'del_17p11.2' versus Clinical Feature #2: 'AGE'

'del_17p11.2' versus 'HISTOLOGICAL.TYPE'

P value = 1e-05 (Fisher's exact test), Q value = 0.0067

Table S143. Gene #90: 'del_17p11.2' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

nPatients	ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA	MIXED SEROUS AND ENDOMETRIOID	SEROUS ENDOMETRIAL ADENOCARCINOMA
ALL	380	21	104
DEL PEAK 39(17P11.2) MUTATED	41	8	66
DEL PEAK 39(17P11.2) WILD-TYPE	339	13	38

Figure S143. Get High-res Image Gene #90: 'del_17p11.2' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

'del_17q11.2' versus 'AGE'

P value = 1.13e-06 (Wilcoxon-test), Q value = 0.00077

Table S144. Gene #91: 'del_17q11.2' versus Clinical Feature #2: 'AGE'

	nPatients	Mean (Std.Dev)
ALL	504	63.8 (11.2)
DEL PEAK 40(17Q11.2) MUTATED	95	68.2 (9.4)
DEL PEAK 40(17Q11.2) WILD-TYPE	409	62.8 (11.4)

Figure S144. Get High-res Image Gene #91: 'del_17q11.2' versus Clinical Feature #2: 'AGE'

'del_17q11.2' versus 'HISTOLOGICAL.TYPE'

P value = 1e-05 (Fisher's exact test), Q value = 0.0067

Table S145. Gene #91: 'del_17q11.2' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

nPatients	ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA	MIXED SEROUS AND ENDOMETRIOID	SEROUS ENDOMETRIAL ADENOCARCINOMA
ALL	380	21	104
DEL PEAK 40(17Q11.2) MUTATED	42	5	48
DEL PEAK 40(17Q11.2) WILD-TYPE	338	16	56

Figure S145. Get High-res Image Gene #91: 'del_17q11.2' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

'del_17q21.31' versus 'AGE'

P value = 1.77e-05 (Wilcoxon-test), Q value = 0.01

Table S146. Gene #92: 'del_17q21.31' versus Clinical Feature #2: 'AGE'

	nPatients	Mean (Std.Dev)
ALL	504	63.8 (11.2)
DEL PEAK 41(17Q21.31) MUTATED	100	67.8 (9.9)
DEL PEAK 41(17Q21.31) WILD-TYPE	404	62.9 (11.3)

Figure S146. Get High-res Image Gene #92: 'del_17q21.31' versus Clinical Feature #2: 'AGE'

'del_17q21.31' versus 'HISTOLOGICAL.TYPE'

P value = 1e-05 (Fisher's exact test), Q value = 0.0067

Table S147. Gene #92: 'del_17q21.31' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

nPatients	ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA	MIXED SEROUS AND ENDOMETRIOID	SEROUS ENDOMETRIAL ADENOCARCINOMA
ALL	380	21	104
DEL PEAK 41(17Q21.31) MUTATED	41	5	54
DEL PEAK 41(17Q21.31) WILD-TYPE	339	16	50

Figure S147. Get High-res Image Gene #92: 'del_17q21.31' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

'del_18q21.2' versus 'HISTOLOGICAL.TYPE'

P value = 1e-05 (Fisher's exact test), Q value = 0.0067

Table S148. Gene #93: 'del_18q21.2' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

nPatients	ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA	MIXED SEROUS AND ENDOMETRIOID	SEROUS ENDOMETRIAL ADENOCARCINOMA
ALL	380	21	104
DEL PEAK 42(18Q21.2) MUTATED	35	6	41
DEL PEAK 42(18Q21.2) WILD-TYPE	345	15	63

Figure S148. Get High-res Image Gene #93: 'del_18q21.2' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

'del_18q23' versus 'HISTOLOGICAL.TYPE'

P value = 1e-05 (Fisher's exact test), Q value = 0.0067

Table S149. Gene #94: 'del_18q23' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

nPatients	ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA	MIXED SEROUS AND ENDOMETRIOID	SEROUS ENDOMETRIAL ADENOCARCINOMA
ALL	380	21	104
DEL PEAK 43(18Q23) MUTATED	34	6	47
DEL PEAK 43(18Q23) WILD-TYPE	346	15	57

Figure S149. Get High-res Image Gene #94: 'del_18q23' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

'del_19p13.3' versus 'Time to Death'

P value = 1.45e-05 (logrank test), Q value = 0.0084

Table S150. Gene #95: 'del_19p13.3' versus Clinical Feature #1: 'Time to Death'

	nPatients	nDeath	Duration Range (Median), Month
ALL	503	60	0.0 - 191.8 (22.8)
DEL PEAK 44(19P13.3) MUTATED	140	30	0.0 - 125.4 (19.7)
DEL PEAK 44(19P13.3) WILD-TYPE	363	30	0.1 - 191.8 (23.5)

Figure S150. Get High-res Image Gene #95: 'del_19p13.3' versus Clinical Feature #1: 'Time to Death'

'del_19p13.3' versus 'AGE'

P value = 2.02e-10 (Wilcoxon-test), Q value = 1.4e-07

Table S151. Gene #95: 'del_19p13.3' versus Clinical Feature #2: 'AGE'

	nPatients	Mean (Std.Dev)
ALL	504	63.8 (11.2)
DEL PEAK 44(19P13.3) MUTATED	141	68.5 (8.7)
DEL PEAK 44(19P13.3) WILD-TYPE	363	62.0 (11.6)

Figure S151. Get High-res Image Gene #95: 'del_19p13.3' versus Clinical Feature #2: 'AGE'

'del_19p13.3' versus 'HISTOLOGICAL.TYPE'

P value = 1e-05 (Fisher's exact test), Q value = 0.0067

Table S152. Gene #95: 'del_19p13.3' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

nPatients	ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA	MIXED SEROUS AND ENDOMETRIOID	SEROUS ENDOMETRIAL ADENOCARCINOMA
ALL	380	21	104
DEL PEAK 44(19P13.3) MUTATED	41	8	92
DEL PEAK 44(19P13.3) WILD-TYPE	339	13	12

Figure S152. Get High-res Image Gene #95: 'del_19p13.3' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

'del_19p12' versus 'HISTOLOGICAL.TYPE'

P value = 1e-05 (Fisher's exact test), Q value = 0.0067

Table S153. Gene #96: 'del_19p12' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

nPatients	ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA	MIXED SEROUS AND ENDOMETRIOID	SEROUS ENDOMETRIAL ADENOCARCINOMA
ALL	380	21	104
DEL PEAK 45(19P12) MUTATED	19	5	28
DEL PEAK 45(19P12) WILD-TYPE	361	16	76

Figure S153. Get High-res Image Gene #96: 'del_19p12' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

'del_19q13.43' versus 'Time to Death'

P value = 0.00029 (logrank test), Q value = 0.16

Table S154. Gene #97: 'del_19q13.43' versus Clinical Feature #1: 'Time to Death'

	nPatients	nDeath	Duration Range (Median), Month
ALL	503	60	0.0 - 191.8 (22.8)
DEL PEAK 46(19Q13.43) MUTATED	57	15	0.0 - 125.4 (20.0)
DEL PEAK 46(19Q13.43) WILD-TYPE	446	45	0.1 - 191.8 (23.1)

Figure S154. Get High-res Image Gene #97: 'del_19q13.43' versus Clinical Feature #1: 'Time to Death'

'del_19q13.43' versus 'HISTOLOGICAL.TYPE'

P value = 1e-05 (Fisher's exact test), Q value = 0.0067

Table S155. Gene #97: 'del_19q13.43' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

nPatients	ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA	MIXED SEROUS AND ENDOMETRIOID	SEROUS ENDOMETRIAL ADENOCARCINOMA
ALL	380	21	104
DEL PEAK 46(19Q13.43) MUTATED	15	4	39
DEL PEAK 46(19Q13.43) WILD-TYPE	365	17	65

Figure S155. Get High-res Image Gene #97: 'del_19q13.43' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

'del_20p12.1' versus 'Time to Death'

P value = 1.98e-05 (logrank test), Q value = 0.011

Table S156. Gene #98: 'del_20p12.1' versus Clinical Feature #1: 'Time to Death'

	nPatients	nDeath	Duration Range (Median), Month
ALL	503	60	0.0 - 191.8 (22.8)
DEL PEAK 47(20P12.1) MUTATED	31	12	0.1 - 149.6 (20.0)
DEL PEAK 47(20P12.1) WILD-TYPE	472	48	0.0 - 191.8 (23.0)

Figure S156. Get High-res Image Gene #98: 'del_20p12.1' versus Clinical Feature #1: 'Time to Death'

'del_22q13.32' versus 'AGE'

P value = 4.3e-08 (Wilcoxon-test), Q value = 3e-05

Table S157. Gene #99: 'del_22q13.32' versus Clinical Feature #2: 'AGE'

	nPatients	Mean (Std.Dev)
ALL	504	63.8 (11.2)
DEL PEAK 48(22Q13.32) MUTATED	129	68.5 (9.6)
DEL PEAK 48(22Q13.32) WILD-TYPE	375	62.2 (11.3)

Figure S157. Get High-res Image Gene #99: 'del_22q13.32' versus Clinical Feature #2: 'AGE'

'del_22q13.32' versus 'HISTOLOGICAL.TYPE'

P value = 1e-05 (Fisher's exact test), Q value = 0.0067

Table S158. Gene #99: 'del_22q13.32' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

nPatients	ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA	MIXED SEROUS AND ENDOMETRIOID	SEROUS ENDOMETRIAL ADENOCARCINOMA
ALL	380	21	104
DEL PEAK 48(22Q13.32) MUTATED	51	10	68
DEL PEAK 48(22Q13.32) WILD-TYPE	329	11	36

Figure S158. Get High-res Image Gene #99: 'del_22q13.32' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

'del_xp21.1' versus 'Time to Death'

P value = 0.000365 (logrank test), Q value = 0.2

Table S159. Gene #100: 'del_xp21.1' versus Clinical Feature #1: 'Time to Death'

	nPatients	nDeath	Duration Range (Median), Month
ALL	503	60	0.0 - 191.8 (22.8)
DEL PEAK 49(XP21.1) MUTATED	77	18	0.0 - 113.4 (17.9)
DEL PEAK 49(XP21.1) WILD-TYPE	426	42	0.1 - 191.8 (23.3)

Figure S159. Get High-res Image Gene #100: 'del_xp21.1' versus Clinical Feature #1: 'Time to Death'

'del_xp21.1' versus 'AGE'

P value = 0.000263 (Wilcoxon-test), Q value = 0.14

Table S160. Gene #100: 'del_xp21.1' versus Clinical Feature #2: 'AGE'

	nPatients	Mean (Std.Dev)
ALL	504	63.8 (11.2)
DEL PEAK 49(XP21.1) MUTATED	77	67.9 (9.4)
DEL PEAK 49(XP21.1) WILD-TYPE	427	63.1 (11.4)

Figure S160. Get High-res Image Gene #100: 'del_xp21.1' versus Clinical Feature #2: 'AGE'

'del_xp21.1' versus 'HISTOLOGICAL.TYPE'

P value = 1e-05 (Fisher's exact test), Q value = 0.0067

Table S161. Gene #100: 'del_xp21.1' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

nPatients	ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA	MIXED SEROUS AND ENDOMETRIOID	SEROUS ENDOMETRIAL ADENOCARCINOMA
ALL	380	21	104
DEL PEAK 49(XP21.1) MUTATED	28	3	46
DEL PEAK 49(XP21.1) WILD-TYPE	352	18	58

Figure S161. Get High-res Image Gene #100: 'del_xp21.1' versus Clinical Feature #3: 'HISTOLOGICAL.TYPE'

Methods & Data

Input

Copy number data file = transformed.cor.cli.txt
Clinical data file = UCEC-TP.merged_data.txt
Number of patients = 505
Number of significantly focal cnvs = 100
Number of selected clinical features = 7
Exclude genes that fewer than K tumors have mutations, K = 3

Survival analysis

For survival clinical features, the Kaplan-Meier survival curves of tumors with and without gene mutations were plotted and the statistical significance P values were estimated by logrank test (Bland and Altman 2004) using the 'survdiff' function in R

Fisher's exact test

For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R

Q value calculation

For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.

Download Results

In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.

References

[1] Bland and Altman, Statistics notes: The logrank test, BMJ 328(7447):1073 (2004)

[2] Fisher, R.A., On the interpretation of chi-square from contingency tables, and the calculation of P, Journal of the Royal Statistical Society 85(1):87-94 (1922)

[3] Benjamini and Hochberg, Controlling the false discovery rate: a practical and powerful approach to multiple testing, Journal of the Royal Statistical Society Series B 59:289-300 (1995)

Made with Nozzle