Clinical Features	CN_CNMF		METHLYATION_CNMF		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
amp_1q22	42 (75%)	14	0.5054	1	0.22366	1	0.47673	1	0.29437	1	0.18514	1	0.18717	1	0.33283	1	0.2666	1
amp_2p14	28 (50%)	28	0.56048	1	0.02514	1	0.0073599	1	0.081379	1	0.48882	1	0.24805	1	0.22343	1	0.36042	1
amp_2q13	29 (52%)	27	0.53166	1	0.01561	1	0.04653	1	0.31799	1	1	1	0.66367	1	0.73812	1	0.7287	1
amp_3p25.1	20 (36%)	36	0.01228	1	0.51494	1	0.29973	1	0.11246	1	0.22816	1	0.065179	1	0.12186	1	0.066329	1
amp_3q26.2	37 (66%)	19	0.0051499	1	0.00499	1	0.090759	1	0.15758	1	0.349	1	0.24103	1	0.4617	1	0.18348	1
amp_4p16.3	25 (45%)	31	0.02741	1	0.13031	1	0.39049	1	0.18736	1	0.97506	1	0.28757	1	0.50549	1	0.53101	1
amp_5p13.2	26 (46%)	30	0.00172	0.831	0.56839	1	0.24489	1	0.056879	1	0.92833	1	0.04578	1	0.47801	1	0.17288	1
amp_6p24.2	37 (66%)	19	0.1087	1	0.97166	1	0.68764	1	0.3567	1	0.87696	1	0.49817	1	0.87537	1	0.76994	1
amp_8p11.21	33 (59%)	23	0.5508	1	0.62514	1	0.67917	1	0.55652	1	0.6242	1	1	1	0.7793	1	0.59823	1
amp_8q11.23	38 (68%)	18	0.01262	1	0.22668	1	0.19942	1	0.16818	1	0.77146	1	0.92193	1	0.62102	1	0.85749	1
amp_8q24.21	42 (75%)	14	0.00206	0.991	0.75686	1	0.1901	1	0.33933	1	0.03891	1	0.03077	1	0.0059399	1	0.01498	1
amp_8q24.21	40 (71%)	16	0.00052999	0.258	0.3573	1	0.076709	1	0.11752	1	0.04742	1	0.063359	1	0.0076999	1	0.02198	1
amp_10q22.2	26 (46%)	30	0.31184	1	0.48585	1	0.96344	1	0.92121	1	0.72532	1	0.73986	1	1	1	0.42567	1
amp_11q13.1	19 (34%)	37	0.77693	1	0.64827	1	0.32682	1	0.30575	1	0.76155	1	1	1	0.82253	1	0.9753	1
amp_12q12	22 (39%)	34	0.03097	1	0.10484	1	0.25834	1	0.40421	1	0.92632	1	1	1	0.88302	1	0.95291	1
amp_12q15	17 (30%)	39	0.58592	1	0.38099	1	0.25379	1	0.70231	1	0.80026	1	0.16689	1	1	1	0.22871	1
amp_13q31.3	25 (45%)	31	0.52526	1	0.44158	1	0.13528	1	0.11609	1	0.084389	1	0.03713	1	0.00244	1	0.053939	1
amp_16p11.2	20 (36%)	36	0.02782	1	0.28295	1	0.6524	1	0.074459	1	0.7594	1	0.40851	1	0.51499	1	0.2089	1
amp_17q12	27 (48%)	29	0.44502	1	0.19015	1	0.33269	1	0.46028	1	0.34291	1	0.78332	1	0.60791	1	1	1
amp_17q25.1	32 (57%)	24	0.49563	1	0.0123	1	0.62984	1	0.30688	1	0.68839	1	0.71705	1	0.32287	1	0.65802	1
amp_19p13.2	19 (34%)	37	0.33237	1	0.27319	1	0.7963	1	0.32278	1	0.3445	1	0.27703	1	0.14594	1	0.26717	1
amp_19q12	45 (80%)	11	0.00139	0.673	0.00013	0.0634	0.19142	1	0.01989	1	0.64221	1	0.50057	1	0.23234	1	0.43722	1
amp_20q11.21	48 (86%)	8	0.00432	1	0.16692	1	0.54554	1	0.42195	1	0.16224	1	0.14004	1	0.056559	1	0.27361	1
amp_20q11.21	48 (86%)	8	0.1016	1	0.25501	1	0.1936	1	0.31371	1	0.17765	1	0.35041	1	0.37354	1	0.55899	1
amp_xp11.21	28 (50%)	28	0.057049	1	0.56484	1	0.0471	1	0.30192	1	0.0274	1	0.10114	1	0.11327	1	0.064709	1
del_1p36.21	19 (34%)	37	0.72755	1	0.37652	1	0.34606	1	0.081659	1	0.13354	1	0.02335	1	0.071919	1	0.059789	1
del_2q22.1	11 (20%)	45	0.91744	1	0.54242	1	0.52694	1	0.17107	1	0.55193	1	0.55697	1	0.25657	1	0.9212	1
del_3p14.2	37 (66%)	19	0.73004	1	0.6995	1	0.81065	1	0.4733	1	0.62636	1	0.76629	1	0.86957	1	0.90193	1
del_3q13.31	22 (39%)	34	0.20587	1	0.04547	1	0.88039	1	0.068329	1	1	1	0.46132	1	0.35413	1	0.82097	1
del_4q22.1	37 (66%)	19	0.16399	1	0.056099	1	0.02444	1	0.15383	1	0.01262	1	0.12692	1	0.03187	1	0.057339	1
del_4q34.3	37 (66%)	19	0.0176	1	0.01983	1	0.01207	1	0.04094	1	0.00311	1	0.19891	1	0.0048	1	0.12448	1
del_5q12.1	26 (46%)	30	0.62944	1	0.092379	1	0.58667	1	0.45299	1	0.54833	1	0.29553	1	0.2548	1	0.44383	1
del_6q26	10 (18%)	46	0.41704	1	0.54397	1	0.12327	1	0.70006	1	0.33084	1	0.30122	1	0.81713	1	0.31615	1
del_7q11.22	12 (21%)	44	0.71443	1	0.50637	1	0.75975	1	0.83521	1	0.86129	1	0.53278	1	0.84052	1	0.75087	1
del_7q36.2	20 (36%)	36	0.32594	1	0.16855	1	0.49737	1	0.2765	1	0.40226	1	0.04384	1	0.32398	1	0.082249	1
del_8p23.2	33 (59%)	23	0.0018	0.868	0.42863	1	0.35217	1	0.35866	1	0.73909	1	0.32917	1	0.59768	1	0.56098	1
del_9p23	34 (61%)	22	0.29584	1	0.12207	1	0.63594	1	0.32013	1	0.50113	1	0.42506	1	0.48864	1	0.12114	1
del_9q21.13	39 (70%)	17	0.33966	1	0.32481	1	0.20891	1	0.25788	1	0.47899	1	0.3193	1	0.74424	1	0.39906	1
del_9q33.3	39 (70%)	17	0.66819	1	0.074059	1	0.11331	1	0.13954	1	0.96688	1	0.11316	1	1	1	0.26021	1
del_10q23.31	20 (36%)	36	0.15056	1	0.10586	1	0.12253	1	0.24081	1	0.76345	1	0.85274	1	0.76855	1	0.82592	1
del_11p15.5	25 (45%)	31	0.58973	1	0.7691	1	0.89928	1	0.89559	1	0.72441	1	0.89586	1	0.82755	1	0.91738	1
del_11q14.1	26 (46%)	30	0.44445	1	0.17049	1	1	1	0.92318	1	0.27001	1	0.26388	1	0.22709	1	0.073999	1
del_11q23.2	26 (46%)	30	1	1	0.11435	1	0.34338	1	0.86989	1	0.35813	1	0.85965	1	0.39681	1	0.35908	1
del_12q23.1	20 (36%)	36	0.88153	1	0.8997	1	0.65521	1	0.75345	1	0.95025	1	0.34185	1	1	1	0.5444	1
del_12q24.31	20 (36%)	36	0.44336	1	0.82437	1	0.15431	1	0.25875	1	0.56139	1	0.88908	1	0.36829	1	0.93111	1
del_13q12.11	30 (54%)	26	0.29426	1	0.01972	1	0.37452	1	0.20772	1	0.72661	1	0.02544	1	0.34584	1	0.062929	1
del_13q14.2	32 (57%)	24	0.43615	1	0.00041	0.2	0.0129	1	0.02013	1	0.48014	1	0.1585	1	0.04643	1	0.19347	1
del_14q21.1	28 (50%)	28	0.89131	1	0.050789	1	0.063479	1	0.055429	1	0.37758	1	0.38385	1	0.83499	1	0.36538	1
del_15q11.2	41 (73%)	15	0.74756	1	0.096949	1	0.55243	1	0.62203	1	0.14312	1	0.90818	1	0.32472	1	0.7054	1
del_15q15.1	43 (77%)	13	0.16542	1	0.03078	1	0.34802	1	0.76839	1	0.11972	1	0.34894	1	0.066789	1	0.20846	1
del_16p13.3	33 (59%)	23	0.66307	1	0.55002	1	0.57204	1	0.22788	1	0.34963	1	0.39062	1	0.38268	1	0.71596	1
del_16q23.1	39 (70%)	17	0.62625	1	0.42439	1	0.39647	1	0.39357	1	0.86377	1	0.81209	1	0.17112	1	0.62152	1
del_17p13.1	42 (75%)	14	0.13935	1	0.055259	1	0.056829	1	0.41989	1	0.13294	1	0.18306	1	0.01979	1	0.085419	1
del_17q21.32	19 (34%)	37	0.14788	1	0.76419	1	0.17917	1	0.067469	1	0.22308	1	0.2118	1	0.38725	1	0.7371	1
del_18q22.2	26 (46%)	30	0.33192	1	0.34104	1	0.50489	1	0.36073	1	0.02148	1	0.077669	1	0.01339	1	0.02402	1
del_19p13.3	47 (84%)	9	0.061319	1	0.02026	1	0.097339	1	0.37568	1	0.0148	1	0.085469	1	0.0093999	1	0.1125	1
del_19q13.33	17 (30%)	39	0.3158	1	0.0090599	1	0.00065999	0.32	0.03456	1	0.22195	1	0.03838	1	0.36836	1	0.01282	1
del_20p12.1	9 (16%)	47	0.53789	1	0.70302	1	0.39087	1	0.52632	1	0.21937	1	0.34092	1	0.36616	1	0.46613	1
del_22q13.31	40 (71%)	16	0.29767	1	0.4097	1	0.89379	1	0.46062	1	0.58018	1	0.35148	1	0.85841	1	0.5886	1
del_xp21.1	18 (32%)	38	0.93682	1	0.42128	1	0.81921	1	0.86815	1	0.36052	1	1	1	1	1	0.90022	1
del_xq25	23 (41%)	33	0.62602	1	0.31024	1	0.11375	1	0.89794	1	0.72975	1	0.56792	1	0.27945	1	0.38379	1