Clinical Features CN_CNMF METHLYATION_CNMF MRNASEQ_CNMF MRNASEQ_CHIERARCHICAL MIRSEQ_CNMF MIRSEQ_CHIERARCHICAL MIRSEQ_MATURE_CNMF MIRSEQ_MATURE_CHIERARCHICAL nCNV (%) nWild-Type Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q 1q gain 8 (10%) 72 0.71459 1 0.71404 1 0.70081 1 0.80287 1 0.2065 1 0.15607 1 0.3136 1 0.8261 1 2p gain 10 (12%) 70 0.31528 1 1 1 0.03771 1 0.11558 1 0.11694 1 0.19881 1 0.65759 1 0.0081899 1 2q gain 8 (10%) 72 0.39342 1 0.71516 1 0.054939 1 0.11088 1 0.31206 1 0.01628 1 0.42202 1 0.00247 0.872 4p gain 7 (9%) 73 0.02731 1 0.28231 1 0.15097 1 0.12044 1 0.77488 1 0.54771 1 0.36526 1 0.29615 1 4q gain 4 (5%) 76 0.1588 1 0.27113 1 0.39835 1 0.34403 1 0.32858 1 0.80828 1 0.51223 1 0.3018 1 5p gain 3 (4%) 77 0.16095 1 0.44189 1 0.78376 1 0.10805 1 1 1 0.075639 1 1 1 0.84217 1 5q gain 3 (4%) 77 0.16268 1 0.43891 1 0.78185 1 0.10774 1 1 1 0.076179 1 1 1 0.83799 1 6p gain 39 (49%) 41 0.00026 0.0941 0.0039 1 0.00026 0.0941 0.00027 0.0972 9.9999e-06 0.00392 3e-05 0.0111 0.0031 1 5e-05 0.0183 6q gain 16 (20%) 64 0.0057899 1 0.00251 0.884 0.00037 0.133 0.00087999 0.315 4e-05 0.0148 0.00015 0.0544 0.0062299 1 0.00087999 0.315 7p gain 9 (11%) 71 0.16333 1 0.12691 1 1 1 0.74201 1 0.65793 1 0.2211 1 0.8945 1 0.43334 1 7q gain 8 (10%) 72 0.055619 1 0.03034 1 0.89028 1 0.44795 1 0.27282 1 0.35881 1 0.68852 1 0.26846 1 8p gain 33 (41%) 47 0.00111 0.395 0.00111 0.395 0.00253 0.885 0.00435 1 0.04074 1 0.02022 1 0.03224 1 0.0257 1 8q gain 53 (66%) 27 9.9999e-06 0.00392 9.9999e-06 0.00392 4e-05 0.0148 9.9999e-06 0.00392 5e-05 0.0183 9.9999e-06 0.00392 9.9999e-06 0.00392 5e-05 0.0183 9p gain 6 (8%) 74 0.2332 1 0.17597 1 0.40157 1 0.63765 1 0.74069 1 0.90651 1 0.087009 1 0.93691 1 9q gain 5 (6%) 75 0.51043 1 0.03777 1 0.83753 1 0.8387 1 0.34249 1 0.97429 1 0.0079699 1 0.71891 1 11p gain 9 (11%) 71 0.16588 1 0.53948 1 1 1 0.74004 1 0.27195 1 0.24509 1 0.54566 1 0.28112 1 11q gain 10 (12%) 70 0.31659 1 0.82925 1 0.90936 1 0.83013 1 0.1459 1 0.17202 1 0.54423 1 0.2849 1 12p gain 3 (4%) 77 0.16171 1 0.44198 1 0.090629 1 0.01016 1 1 1 0.0099599 1 1 1 0.12509 1 12q gain 3 (4%) 77 0.16147 1 0.43983 1 0.088549 1 0.0095199 1 1 1 0.0099399 1 1 1 0.12536 1 13q gain 6 (8%) 74 0.10539 1 1 1 0.73717 1 0.75294 1 0.64526 1 0.10513 1 1 1 0.060489 1 14q gain 3 (4%) 77 0.03779 1 0.44117 1 0.58856 1 0.3292 1 1 1 0.18461 1 1 1 0.7291 1 16p gain 4 (5%) 76 1 1 0.43877 1 1 1 0.43793 1 0.41322 1 0.02639 1 0.37971 1 1 1 17p gain 8 (10%) 72 0.080939 1 0.80267 1 0.38926 1 0.22013 1 0.3922 1 0.0099299 1 0.54291 1 0.2832 1 17q gain 9 (11%) 71 0.21818 1 1 1 0.42229 1 0.3113 1 0.27143 1 0.01789 1 0.41186 1 0.35302 1 20p gain 8 (10%) 72 0.0093699 1 0.56903 1 0.38953 1 0.2191 1 0.31042 1 0.17975 1 0.31677 1 0.69524 1 20q gain 9 (11%) 71 0.00203 0.719 0.53938 1 0.14365 1 0.056579 1 0.24742 1 0.24674 1 0.41377 1 0.91077 1 21q gain 14 (18%) 66 0.00309 1 0.19586 1 0.10405 1 0.01294 1 0.92559 1 0.1652 1 0.52699 1 0.16186 1 22q gain 6 (8%) 74 0.10565 1 0.64447 1 0.15319 1 0.22058 1 0.64493 1 0.0065599 1 0.72879 1 0.058999 1 xq gain 10 (12%) 70 0.3897 1 0.093399 1 0.10838 1 0.13884 1 0.15652 1 0.055569 1 0.36719 1 0.36646 1 1p loss 19 (24%) 61 0.0044 1 0.052319 1 0.78131 1 0.66271 1 0.31834 1 0.0089699 1 0.46051 1 0.051959 1 1q loss 3 (4%) 77 0.0383 1 0.16888 1 0.21707 1 0.32226 1 0.41996 1 0.49183 1 0.068509 1 0.073199 1 3p loss 43 (54%) 37 9.9999e-06 0.00392 9.9999e-06 0.00392 9.9999e-06 0.00392 9.9999e-06 0.00392 9.9999e-06 0.00392 9.9999e-06 0.00392 9.9999e-06 0.00392 9.9999e-06 0.00392 3q loss 43 (54%) 37 9.9999e-06 0.00392 9.9999e-06 0.00392 9.9999e-06 0.00392 9.9999e-06 0.00392 9.9999e-06 0.00392 9.9999e-06 0.00392 9.9999e-06 0.00392 9.9999e-06 0.00392 4q loss 3 (4%) 77 1 1 0.79141 1 0.59228 1 0.60203 1 1 1 0.61192 1 0.37938 1 0.62209 1 5q loss 3 (4%) 77 0.44996 1 0.10852 1 0.088339 1 0.16969 1 0.59504 1 0.1849 1 0.20361 1 0.84131 1 6q loss 17 (21%) 63 6.9999e-05 0.0255 0.00327 1 0.050779 1 0.0050199 1 0.10992 1 0.02944 1 0.00433 1 0.00252 0.885 8p loss 9 (11%) 71 0.03026 1 0.34412 1 0.03711 1 0.023 1 0.19926 1 0.16319 1 0.13911 1 0.03129 1 8q loss 3 (4%) 77 0.78577 1 0.60232 1 1 1 0.79051 1 0.79467 1 1 1 1 1 0.83946 1 9p loss 8 (10%) 72 0.10943 1 0.04148 1 0.34436 1 0.1512 1 0.18367 1 0.25415 1 0.15085 1 0.39937 1 9q loss 7 (9%) 73 0.16681 1 0.074869 1 0.59344 1 0.23944 1 0.091099 1 0.40063 1 0.086749 1 0.15453 1 11p loss 3 (4%) 77 0.03732 1 0.23604 1 0.0432 1 0.10802 1 0.22309 1 0.24887 1 0.28263 1 0.18771 1 12p loss 3 (4%) 77 0.78778 1 0.60362 1 1 1 0.78868 1 0.79193 1 1 1 0.76859 1 1 1 13q loss 3 (4%) 77 1 1 0.1697 1 0.59303 1 0.60322 1 0.79447 1 0.61019 1 0.55893 1 0.62602 1 15q loss 4 (5%) 76 0.15503 1 0.04919 1 0.82999 1 0.82625 1 1 1 0.6624 1 0.81423 1 0.56548 1 16p loss 3 (4%) 77 1 1 0.43705 1 0.59093 1 0.60571 1 0.79379 1 0.77102 1 0.56134 1 0.62488 1 16q loss 16 (20%) 64 0.02121 1 0.13227 1 0.096079 1 0.01303 1 0.93288 1 0.0062499 1 0.35793 1 0.24181 1 19p loss 3 (4%) 77 0.45221 1 0.60384 1 0.78232 1 1 1 0.59769 1 0.00287 0.999 0.56124 1 0.28066 1 19q loss 3 (4%) 77 0.45361 1 0.60296 1 0.78164 1 1 1 0.59685 1 0.00257 0.897 0.56026 1 0.27927 1 xq loss 12 (15%) 68 0.33885 1 0.03845 1 0.32141 1 0.26619 1 0.39247 1 0.04895 1 0.10193 1 0.072549 1