		Clinical Features	CN_CNMF		METHLYATION_CNMF		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
1q gain	8 (10%)	72	0.71459	1	0.71404	1	0.70081	1	0.80287	1	0.2065	1	0.15607	1	0.3136	1	0.8261	1
2p gain	10 (12%)	70	0.31528	1	1	1	0.03771	1	0.11558	1	0.11694	1	0.19881	1	0.65759	1	0.0081899	1
2q gain	8 (10%)	72	0.39342	1	0.71516	1	0.054939	1	0.11088	1	0.31206	1	0.01628	1	0.42202	1	0.00247	0.872
4p gain	7 (9%)	73	0.02731	1	0.28231	1	0.15097	1	0.12044	1	0.77488	1	0.54771	1	0.36526	1	0.29615	1
4q gain	4 (5%)	76	0.1588	1	0.27113	1	0.39835	1	0.34403	1	0.32858	1	0.80828	1	0.51223	1	0.3018	1
5p gain	3 (4%)	77	0.16095	1	0.44189	1	0.78376	1	0.10805	1	1	1	0.075639	1	1	1	0.84217	1
5q gain	3 (4%)	77	0.16268	1	0.43891	1	0.78185	1	0.10774	1	1	1	0.076179	1	1	1	0.83799	1
6p gain	39 (49%)	41	0.00026	0.0941	0.0039	1	0.00026	0.0941	0.00027	0.0972	9.9999e-06	0.00392	3e-05	0.0111	0.0031	1	5e-05	0.0183
6q gain	16 (20%)	64	0.0057899	1	0.00251	0.884	0.00037	0.133	0.00087999	0.315	4e-05	0.0148	0.00015	0.0544	0.0062299	1	0.00087999	0.315
7p gain	9 (11%)	71	0.16333	1	0.12691	1	1	1	0.74201	1	0.65793	1	0.2211	1	0.8945	1	0.43334	1
7q gain	8 (10%)	72	0.055619	1	0.03034	1	0.89028	1	0.44795	1	0.27282	1	0.35881	1	0.68852	1	0.26846	1
8p gain	33 (41%)	47	0.00111	0.395	0.00111	0.395	0.00253	0.885	0.00435	1	0.04074	1	0.02022	1	0.03224	1	0.0257	1
8q gain	53 (66%)	27	9.9999e-06	0.00392	9.9999e-06	0.00392	4e-05	0.0148	9.9999e-06	0.00392	5e-05	0.0183	9.9999e-06	0.00392	9.9999e-06	0.00392	5e-05	0.0183
9p gain	6 (8%)	74	0.2332	1	0.17597	1	0.40157	1	0.63765	1	0.74069	1	0.90651	1	0.087009	1	0.93691	1
9q gain	5 (6%)	75	0.51043	1	0.03777	1	0.83753	1	0.8387	1	0.34249	1	0.97429	1	0.0079699	1	0.71891	1
11p gain	9 (11%)	71	0.16588	1	0.53948	1	1	1	0.74004	1	0.27195	1	0.24509	1	0.54566	1	0.28112	1
11q gain	10 (12%)	70	0.31659	1	0.82925	1	0.90936	1	0.83013	1	0.1459	1	0.17202	1	0.54423	1	0.2849	1
12p gain	3 (4%)	77	0.16171	1	0.44198	1	0.090629	1	0.01016	1	1	1	0.0099599	1	1	1	0.12509	1
12q gain	3 (4%)	77	0.16147	1	0.43983	1	0.088549	1	0.0095199	1	1	1	0.0099399	1	1	1	0.12536	1
13q gain	6 (8%)	74	0.10539	1	1	1	0.73717	1	0.75294	1	0.64526	1	0.10513	1	1	1	0.060489	1
14q gain	3 (4%)	77	0.03779	1	0.44117	1	0.58856	1	0.3292	1	1	1	0.18461	1	1	1	0.7291	1
16p gain	4 (5%)	76	1	1	0.43877	1	1	1	0.43793	1	0.41322	1	0.02639	1	0.37971	1	1	1
17p gain	8 (10%)	72	0.080939	1	0.80267	1	0.38926	1	0.22013	1	0.3922	1	0.0099299	1	0.54291	1	0.2832	1
17q gain	9 (11%)	71	0.21818	1	1	1	0.42229	1	0.3113	1	0.27143	1	0.01789	1	0.41186	1	0.35302	1
20p gain	8 (10%)	72	0.0093699	1	0.56903	1	0.38953	1	0.2191	1	0.31042	1	0.17975	1	0.31677	1	0.69524	1
20q gain	9 (11%)	71	0.00203	0.719	0.53938	1	0.14365	1	0.056579	1	0.24742	1	0.24674	1	0.41377	1	0.91077	1
21q gain	14 (18%)	66	0.00309	1	0.19586	1	0.10405	1	0.01294	1	0.92559	1	0.1652	1	0.52699	1	0.16186	1
22q gain	6 (8%)	74	0.10565	1	0.64447	1	0.15319	1	0.22058	1	0.64493	1	0.0065599	1	0.72879	1	0.058999	1
xq gain	10 (12%)	70	0.3897	1	0.093399	1	0.10838	1	0.13884	1	0.15652	1	0.055569	1	0.36719	1	0.36646	1
1p loss	19 (24%)	61	0.0044	1	0.052319	1	0.78131	1	0.66271	1	0.31834	1	0.0089699	1	0.46051	1	0.051959	1
1q loss	3 (4%)	77	0.0383	1	0.16888	1	0.21707	1	0.32226	1	0.41996	1	0.49183	1	0.068509	1	0.073199	1
3p loss	43 (54%)	37	9.9999e-06	0.00392	9.9999e-06	0.00392	9.9999e-06	0.00392	9.9999e-06	0.00392	9.9999e-06	0.00392	9.9999e-06	0.00392	9.9999e-06	0.00392	9.9999e-06	0.00392
3q loss	43 (54%)	37	9.9999e-06	0.00392	9.9999e-06	0.00392	9.9999e-06	0.00392	9.9999e-06	0.00392	9.9999e-06	0.00392	9.9999e-06	0.00392	9.9999e-06	0.00392	9.9999e-06	0.00392
4q loss	3 (4%)	77	1	1	0.79141	1	0.59228	1	0.60203	1	1	1	0.61192	1	0.37938	1	0.62209	1
5q loss	3 (4%)	77	0.44996	1	0.10852	1	0.088339	1	0.16969	1	0.59504	1	0.1849	1	0.20361	1	0.84131	1
6q loss	17 (21%)	63	6.9999e-05	0.0255	0.00327	1	0.050779	1	0.0050199	1	0.10992	1	0.02944	1	0.00433	1	0.00252	0.885
8p loss	9 (11%)	71	0.03026	1	0.34412	1	0.03711	1	0.023	1	0.19926	1	0.16319	1	0.13911	1	0.03129	1
8q loss	3 (4%)	77	0.78577	1	0.60232	1	1	1	0.79051	1	0.79467	1	1	1	1	1	0.83946	1
9p loss	8 (10%)	72	0.10943	1	0.04148	1	0.34436	1	0.1512	1	0.18367	1	0.25415	1	0.15085	1	0.39937	1
9q loss	7 (9%)	73	0.16681	1	0.074869	1	0.59344	1	0.23944	1	0.091099	1	0.40063	1	0.086749	1	0.15453	1
11p loss	3 (4%)	77	0.03732	1	0.23604	1	0.0432	1	0.10802	1	0.22309	1	0.24887	1	0.28263	1	0.18771	1
12p loss	3 (4%)	77	0.78778	1	0.60362	1	1	1	0.78868	1	0.79193	1	1	1	0.76859	1	1	1
13q loss	3 (4%)	77	1	1	0.1697	1	0.59303	1	0.60322	1	0.79447	1	0.61019	1	0.55893	1	0.62602	1
15q loss	4 (5%)	76	0.15503	1	0.04919	1	0.82999	1	0.82625	1	1	1	0.6624	1	0.81423	1	0.56548	1
16p loss	3 (4%)	77	1	1	0.43705	1	0.59093	1	0.60571	1	0.79379	1	0.77102	1	0.56134	1	0.62488	1
16q loss	16 (20%)	64	0.02121	1	0.13227	1	0.096079	1	0.01303	1	0.93288	1	0.0062499	1	0.35793	1	0.24181	1
19p loss	3 (4%)	77	0.45221	1	0.60384	1	0.78232	1	1	1	0.59769	1	0.00287	0.999	0.56124	1	0.28066	1
19q loss	3 (4%)	77	0.45361	1	0.60296	1	0.78164	1	1	1	0.59685	1	0.00257	0.897	0.56026	1	0.27927	1
xq loss	12 (15%)	68	0.33885	1	0.03845	1	0.32141	1	0.26619	1	0.39247	1	0.04895	1	0.10193	1	0.072549	1
