Broad GDAC Analyses Status
analyses__2015_04_02__fppp Run for Tumor Type: FPPP

CohortBCRClinicalCNLowPMethylationmRNAmRNASeqmiRmiRSeqRPPAMAFrawMAF
FPPP383800000022000

Note that the links below require Broad internal Firehose login credentials.

PipelineNotRunnableRunnableInProcessSuccessfulUnsuccessful
1TP-Aggregate_AnalysisFeatures10000
2TP-Aggregate_Gene_Status10000
3TP-Aggregate_Molecular_Subtype_Clusters00010
4TP-Append_CustomClinical00010
5TP-CoMut1.510000
6TP-CoMut2.010000
7TP-CoMut2CV10000
8TP-CoMutCV10000
9TP-CopyNumber_Clustering_CNMF10000
10TP-CopyNumber_Clustering_CNMF_thresholded10000
11TP-CopyNumber_Gistic210000
12TP-CopyNumber_Gistic2_Postprocess_Focal10000
13TP-CopyNumberLowPass_Gistic210000
14TP-Correlate_Clinical_vs_CopyNumber_Arm10000
15TP-Correlate_Clinical_vs_CopyNumber_Focal10000
16TP-Correlate_Clinical_vs_Methylation10000
17TP-Correlate_Clinical_vs_miR10000
18TP-Correlate_Clinical_vs_miRseq00010
19TP-Correlate_Clinical_vs_Molecular_Subtypes00010
20TP-Correlate_Clinical_vs_mRNA10000
21TP-Correlate_Clinical_vs_mRNAseq10000
22TP-Correlate_Clinical_vs_Mutation10000
23TP-Correlate_Clinical_vs_Mutation_APOBEC_Categorical10000
24TP-Correlate_Clinical_vs_Mutation_APOBEC_Continuous10000
25TP-Correlate_Clinical_vs_MutationRate10000
26TP-Correlate_Clinical_vs_RPPA10000
27TP-Correlate_CopyNumber_vs_miR10000
28TP-Correlate_CopyNumber_vs_mRNA10000
29TP-Correlate_CopyNumber_vs_mRNAseq10000
30TP-Correlate_Methylation_vs_mRNA10000
31TP-Correlate_molecularSubtype_vs_CopyNumber_Arm10000
32TP-Correlate_molecularSubtype_vs_CopyNumber_Focal10000
33TP-Correlate_molecularSubtype_vs_Mutation10000
34TP-Correlate_mRNAseq_vs_Mutation_APOBEC10000
35TP-GenerateStickFigures1.510000
36TP-GenerateStickFigures2.010000
37TP-GenerateStickFigures2CV10000
38TP-GenerateStickFiguresCV10000
39TP-LegoPlotter1.510000
40TP-LegoPlotter2.010000
41TP-LegoPlotter2CV10000
42TP-LegoPlotterCV10000
43TP-Methylation_Clustering_CNMF10000
44TP-miR_Clustering_CNMF10000
45TP-miR_Clustering_Consensus_Plus10000
46TP-miR_FindDirectTargets10000
47TP-miRseq_Clustering_CNMF00010
48TP-miRseq_Clustering_Consensus_Plus00010
49TP-miRseq_FindDirectTargets10000
50TP-miRseq_Mature_Clustering_CNMF00001
51TP-miRseq_Mature_Clustering_Consensus_Plus00010
52TP-mRNA_Clustering_CNMF10000
53TP-mRNA_Clustering_Consensus_Plus10000
54TP-mRNAseq_Clustering_CNMF10000
55TP-mRNAseq_Clustering_Consensus_Plus10000
56TP-Mutation_APOBEC10000
57TP-Mutation_Assessor10000
58TP-Mutation_CHASM10000
59TP-Mutation_CoOccurrence10000
60TP-MutSigNozzleReport1.510000
61TP-MutSigNozzleReport2.010000
62TP-MutSigNozzleReport2CV10000
63TP-MutSigNozzleReportCV10000
64TP-MutSigPreprocess1.510000
65TP-MutSigPreprocess2.010000
66TP-MutSigRun1.510000
67TP-MutSigRun2.010000
68TP-MutSigRun2CV10000
69TP-MutSigRunCV10000
70TP-Paradigm_mRNA10000
71TP-Paradigm_mRNA_And_CopyNumber10000
72TP-Paradigm_Prepare_mRNA10000
73TP-Paradigm_Prepare_mRNA_And_Copy_Number10000
74TP-Paradigm_Prepare_RNASeq10000
75TP-Paradigm_Prepare_RNASeq_And_Copy_Number10000
76TP-Paradigm_Preprocess_mRNA10000
77TP-ParadigmPreprocess_mRNA10000
78TP-Paradigm_Preprocess_mRNA_And_Copy_Number10000
79TP-Paradigm_Preprocess_RNASeq10000
80TP-ParadigmPreprocess_RNASeq10000
81TP-Paradigm_Preprocess_RNASeq_And_Copy_Number10000
82TP-Paradigm_Report_Preprocess_mRNA10000
83TP-Paradigm_Report_Preprocess_mRNA_And_CopyNumber10000
84TP-Paradigm_Report_Preprocess_RNASeq10000
85TP-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number10000
86TP-Paradigm_RNASeq10000
87TP-Paradigm_RNASeq_And_Copy_Number10000
88TP-Pathway_FindEnrichedGenes10000
89TP-Pathway_GSEA_mRNAseq10000
90TP-Pathway_Hotnet10000
91TP-Pathway_Overlaps_MSigDB_MutSig2CV10000
92TP-Pathway_Paradigm_mRNA10000
93TP-Pathway_Paradigm_mRNA_And_Copy_Number10000
94TP-Pathway_Paradigm_RNASeq10000
95TP-Pathway_Paradigm_RNASeq_And_Copy_Number10000
96TP-ProcessCoverageForMutSig1.510000
97TP-ProcessCoverageForMutSig2.010000
98TP-RPPA_Clustering_CNMF10000
99TP-RPPA_Clustering_Consensus_Plus10000
Total910071

This table generated on Mon May 11 09:14:23 2015