Broad GDAC Analyses Status
analyses__2015_04_02__fppp Run for Tumor Type: FPPP
Cohort
BCR
Clinical
CN
LowP
Methylation
mRNA
mRNASeq
miR
miRSeq
RPPA
MAF
rawMAF
FPPP
38
38
0
0
0
0
0
0
22
0
0
0
Note that the links below require Broad internal Firehose login credentials.
Pipeline
NotRunnable
Runnable
InProcess
Successful
Unsuccessful
1
TP-Aggregate_AnalysisFeatures
1
0
0
0
0
2
TP-Aggregate_Gene_Status
1
0
0
0
0
3
TP-Aggregate_Molecular_Subtype_Clusters
0
0
0
1
0
4
TP-Append_CustomClinical
0
0
0
1
0
5
TP-CoMut1.5
1
0
0
0
0
6
TP-CoMut2.0
1
0
0
0
0
7
TP-CoMut2CV
1
0
0
0
0
8
TP-CoMutCV
1
0
0
0
0
9
TP-CopyNumber_Clustering_CNMF
1
0
0
0
0
10
TP-CopyNumber_Clustering_CNMF_thresholded
1
0
0
0
0
11
TP-CopyNumber_Gistic2
1
0
0
0
0
12
TP-CopyNumber_Gistic2_Postprocess_Focal
1
0
0
0
0
13
TP-CopyNumberLowPass_Gistic2
1
0
0
0
0
14
TP-Correlate_Clinical_vs_CopyNumber_Arm
1
0
0
0
0
15
TP-Correlate_Clinical_vs_CopyNumber_Focal
1
0
0
0
0
16
TP-Correlate_Clinical_vs_Methylation
1
0
0
0
0
17
TP-Correlate_Clinical_vs_miR
1
0
0
0
0
18
TP-Correlate_Clinical_vs_miRseq
0
0
0
1
0
19
TP-Correlate_Clinical_vs_Molecular_Subtypes
0
0
0
1
0
20
TP-Correlate_Clinical_vs_mRNA
1
0
0
0
0
21
TP-Correlate_Clinical_vs_mRNAseq
1
0
0
0
0
22
TP-Correlate_Clinical_vs_Mutation
1
0
0
0
0
23
TP-Correlate_Clinical_vs_Mutation_APOBEC_Categorical
1
0
0
0
0
24
TP-Correlate_Clinical_vs_Mutation_APOBEC_Continuous
1
0
0
0
0
25
TP-Correlate_Clinical_vs_MutationRate
1
0
0
0
0
26
TP-Correlate_Clinical_vs_RPPA
1
0
0
0
0
27
TP-Correlate_CopyNumber_vs_miR
1
0
0
0
0
28
TP-Correlate_CopyNumber_vs_mRNA
1
0
0
0
0
29
TP-Correlate_CopyNumber_vs_mRNAseq
1
0
0
0
0
30
TP-Correlate_Methylation_vs_mRNA
1
0
0
0
0
31
TP-Correlate_molecularSubtype_vs_CopyNumber_Arm
1
0
0
0
0
32
TP-Correlate_molecularSubtype_vs_CopyNumber_Focal
1
0
0
0
0
33
TP-Correlate_molecularSubtype_vs_Mutation
1
0
0
0
0
34
TP-Correlate_mRNAseq_vs_Mutation_APOBEC
1
0
0
0
0
35
TP-GenerateStickFigures1.5
1
0
0
0
0
36
TP-GenerateStickFigures2.0
1
0
0
0
0
37
TP-GenerateStickFigures2CV
1
0
0
0
0
38
TP-GenerateStickFiguresCV
1
0
0
0
0
39
TP-LegoPlotter1.5
1
0
0
0
0
40
TP-LegoPlotter2.0
1
0
0
0
0
41
TP-LegoPlotter2CV
1
0
0
0
0
42
TP-LegoPlotterCV
1
0
0
0
0
43
TP-Methylation_Clustering_CNMF
1
0
0
0
0
44
TP-miR_Clustering_CNMF
1
0
0
0
0
45
TP-miR_Clustering_Consensus_Plus
1
0
0
0
0
46
TP-miR_FindDirectTargets
1
0
0
0
0
47
TP-miRseq_Clustering_CNMF
0
0
0
1
0
48
TP-miRseq_Clustering_Consensus_Plus
0
0
0
1
0
49
TP-miRseq_FindDirectTargets
1
0
0
0
0
50
TP-miRseq_Mature_Clustering_CNMF
0
0
0
0
1
51
TP-miRseq_Mature_Clustering_Consensus_Plus
0
0
0
1
0
52
TP-mRNA_Clustering_CNMF
1
0
0
0
0
53
TP-mRNA_Clustering_Consensus_Plus
1
0
0
0
0
54
TP-mRNAseq_Clustering_CNMF
1
0
0
0
0
55
TP-mRNAseq_Clustering_Consensus_Plus
1
0
0
0
0
56
TP-Mutation_APOBEC
1
0
0
0
0
57
TP-Mutation_Assessor
1
0
0
0
0
58
TP-Mutation_CHASM
1
0
0
0
0
59
TP-Mutation_CoOccurrence
1
0
0
0
0
60
TP-MutSigNozzleReport1.5
1
0
0
0
0
61
TP-MutSigNozzleReport2.0
1
0
0
0
0
62
TP-MutSigNozzleReport2CV
1
0
0
0
0
63
TP-MutSigNozzleReportCV
1
0
0
0
0
64
TP-MutSigPreprocess1.5
1
0
0
0
0
65
TP-MutSigPreprocess2.0
1
0
0
0
0
66
TP-MutSigRun1.5
1
0
0
0
0
67
TP-MutSigRun2.0
1
0
0
0
0
68
TP-MutSigRun2CV
1
0
0
0
0
69
TP-MutSigRunCV
1
0
0
0
0
70
TP-Paradigm_mRNA
1
0
0
0
0
71
TP-Paradigm_mRNA_And_CopyNumber
1
0
0
0
0
72
TP-Paradigm_Prepare_mRNA
1
0
0
0
0
73
TP-Paradigm_Prepare_mRNA_And_Copy_Number
1
0
0
0
0
74
TP-Paradigm_Prepare_RNASeq
1
0
0
0
0
75
TP-Paradigm_Prepare_RNASeq_And_Copy_Number
1
0
0
0
0
76
TP-Paradigm_Preprocess_mRNA
1
0
0
0
0
77
TP-ParadigmPreprocess_mRNA
1
0
0
0
0
78
TP-Paradigm_Preprocess_mRNA_And_Copy_Number
1
0
0
0
0
79
TP-Paradigm_Preprocess_RNASeq
1
0
0
0
0
80
TP-ParadigmPreprocess_RNASeq
1
0
0
0
0
81
TP-Paradigm_Preprocess_RNASeq_And_Copy_Number
1
0
0
0
0
82
TP-Paradigm_Report_Preprocess_mRNA
1
0
0
0
0
83
TP-Paradigm_Report_Preprocess_mRNA_And_CopyNumber
1
0
0
0
0
84
TP-Paradigm_Report_Preprocess_RNASeq
1
0
0
0
0
85
TP-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number
1
0
0
0
0
86
TP-Paradigm_RNASeq
1
0
0
0
0
87
TP-Paradigm_RNASeq_And_Copy_Number
1
0
0
0
0
88
TP-Pathway_FindEnrichedGenes
1
0
0
0
0
89
TP-Pathway_GSEA_mRNAseq
1
0
0
0
0
90
TP-Pathway_Hotnet
1
0
0
0
0
91
TP-Pathway_Overlaps_MSigDB_MutSig2CV
1
0
0
0
0
92
TP-Pathway_Paradigm_mRNA
1
0
0
0
0
93
TP-Pathway_Paradigm_mRNA_And_Copy_Number
1
0
0
0
0
94
TP-Pathway_Paradigm_RNASeq
1
0
0
0
0
95
TP-Pathway_Paradigm_RNASeq_And_Copy_Number
1
0
0
0
0
96
TP-ProcessCoverageForMutSig1.5
1
0
0
0
0
97
TP-ProcessCoverageForMutSig2.0
1
0
0
0
0
98
TP-RPPA_Clustering_CNMF
1
0
0
0
0
99
TP-RPPA_Clustering_Consensus_Plus
1
0
0
0
0
Total
91
0
0
7
1
This table generated on Mon May 11 09:14:23 2015