Broad GDAC analyses__2015_04_02__gbmlgg Run Status : GBMLGG

Cohort	BCR	Clinical	CN	LowP	Methylation	mRNA	mRNASeq	miR	miRSeq	RPPA	MAF	rawMAF
GBMLGG	1129	1067	1090	52	936	567	676	565	512	472	576	803

Note that the links below require Broad internal Firehose login credentials.

	Pipeline	NotRunnable	Successful	Unsuccessful
1	TP-Aggregate_AnalysisFeatures	0	1	0
2	TP-Aggregate_Gene_Status	0	1	0
3	TP-Aggregate_Molecular_Subtype_Clusters	0	1	0
4	TP-Append_CustomClinical	0	1	0
5	TP-CoMut1.5	0	1	0
6	TP-CoMut2.0	0	1	0
7	TP-CoMut2CV	0	1	0
8	TP-CoMutCV	0	1	0
9	TP-CopyNumber_Clustering_CNMF	0	1	0
10	TP-CopyNumber_Clustering_CNMF_thresholded	0	1	0
11	TP-CopyNumber_Gistic2	0	1	0
12	TP-CopyNumber_Gistic2_Postprocess_Focal	0	1	0
13	TP-CopyNumberLowPass_Gistic2	0	1	0
14	TP-Correlate_Clinical_vs_CopyNumber_Arm	0	1	0
15	TP-Correlate_Clinical_vs_CopyNumber_Focal	0	1	0
16	TP-Correlate_Clinical_vs_Methylation	0	1	0
17	TP-Correlate_Clinical_vs_miR	0	1	0
18	TP-Correlate_Clinical_vs_miRseq	0	1	0
19	TP-Correlate_Clinical_vs_Molecular_Subtypes	0	1	0
20	TP-Correlate_Clinical_vs_mRNA	0	1	0
21	TP-Correlate_Clinical_vs_mRNAseq	0	1	0
22	TP-Correlate_Clinical_vs_Mutation	0	1	0
23	TP-Correlate_Clinical_vs_Mutation_APOBEC_Categorical	1	0	0
24	TP-Correlate_Clinical_vs_Mutation_APOBEC_Continuous	1	0	0
25	TP-Correlate_Clinical_vs_MutationRate	0	1	0
26	TP-Correlate_Clinical_vs_RPPA	1	0	0
27	TP-Correlate_CopyNumber_vs_miR	0	1	0
28	TP-Correlate_CopyNumber_vs_mRNA	0	1	0
29	TP-Correlate_CopyNumber_vs_mRNAseq	0	1	0
30	TP-Correlate_Methylation_vs_mRNA	0	1	0
31	TP-Correlate_molecularSubtype_vs_CopyNumber_Arm	0	1	0
32	TP-Correlate_molecularSubtype_vs_CopyNumber_Focal	0	1	0
33	TP-Correlate_molecularSubtype_vs_Mutation	0	1	0
34	TP-Correlate_mRNAseq_vs_Mutation_APOBEC	1	0	0
35	TP-GenerateStickFigures1.5	0	1	0
36	TP-GenerateStickFigures2.0	0	1	0
37	TP-GenerateStickFigures2CV	0	1	0
38	TP-GenerateStickFiguresCV	0	1	0
39	TP-LegoPlotter1.5	0	1	0
40	TP-LegoPlotter2.0	0	1	0
41	TP-LegoPlotter2CV	0	1	0
42	TP-LegoPlotterCV	0	1	0
43	TP-Methylation_Clustering_CNMF	0	1	0
44	TP-miR_Clustering_CNMF	0	1	0
45	TP-miR_Clustering_Consensus_Plus	0	1	0
46	TP-miR_FindDirectTargets	0	1	0
47	TP-miRseq_Clustering_CNMF	0	1	0
48	TP-miRseq_Clustering_Consensus_Plus	0	1	0
49	TP-miRseq_FindDirectTargets	0	1	0
50	TP-miRseq_Mature_Clustering_CNMF	0	1	0
51	TP-miRseq_Mature_Clustering_Consensus_Plus	0	1	0
52	TP-mRNA_Clustering_CNMF	0	1	0
53	TP-mRNA_Clustering_Consensus_Plus	0	1	0
54	TP-mRNAseq_Clustering_CNMF	0	1	0
55	TP-mRNAseq_Clustering_Consensus_Plus	0	1	0
56	TP-Mutation_APOBEC	0	1	0
57	TP-Mutation_Assessor	0	1	0
58	TP-Mutation_CHASM	0	1	0
59	TP-Mutation_CoOccurrence	0	1	0
60	TP-MutSigNozzleReport1.5	0	1	0
61	TP-MutSigNozzleReport2.0	0	1	0
62	TP-MutSigNozzleReport2CV	0	1	0
63	TP-MutSigNozzleReportCV	0	1	0
64	TP-MutSigPreprocess1.5	0	1	0
65	TP-MutSigPreprocess2.0	0	1	0
66	TP-MutSigRun1.5	0	1	0
67	TP-MutSigRun2.0	0	1	0
68	TP-MutSigRun2CV	0	1	0
69	TP-MutSigRunCV	0	1	0
70	TP-Paradigm_mRNA	0	1	0
71	TP-Paradigm_mRNA_And_CopyNumber	0	1	0
72	TP-Paradigm_Prepare_mRNA	0	1	0
73	TP-Paradigm_Prepare_mRNA_And_Copy_Number	0	1	0
74	TP-Paradigm_Prepare_RNASeq	0	1	0
75	TP-Paradigm_Prepare_RNASeq_And_Copy_Number	0	1	0
76	TP-Paradigm_Preprocess_mRNA	0	1	0
77	TP-ParadigmPreprocess_mRNA	0	1	0
78	TP-Paradigm_Preprocess_mRNA_And_Copy_Number	0	1	0
79	TP-Paradigm_Preprocess_RNASeq	0	1	0
80	TP-ParadigmPreprocess_RNASeq	0	1	0
81	TP-Paradigm_Preprocess_RNASeq_And_Copy_Number	0	1	0
82	TP-Paradigm_Report_Preprocess_mRNA	0	1	0
83	TP-Paradigm_Report_Preprocess_mRNA_And_CopyNumber	0	1	0
84	TP-Paradigm_Report_Preprocess_RNASeq	0	1	0
85	TP-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number	0	1	0
86	TP-Paradigm_RNASeq	0	1	0
87	TP-Paradigm_RNASeq_And_Copy_Number	0	1	0
88	TP-Pathway_FindEnrichedGenes	0	1	0
89	TP-Pathway_GSEA_mRNAseq	0	1	0
90	TP-Pathway_Hotnet	0	0	1
91	TP-Pathway_Overlaps_MSigDB_MutSig2CV	0	1	0
92	TP-Pathway_Paradigm_mRNA	0	1	0
93	TP-Pathway_Paradigm_mRNA_And_Copy_Number	0	1	0
94	TP-Pathway_Paradigm_RNASeq	0	1	0
95	TP-Pathway_Paradigm_RNASeq_And_Copy_Number	0	1	0
96	TP-ProcessCoverageForMutSig1.5	0	1	0
97	TP-ProcessCoverageForMutSig2.0	0	1	0
98	TP-RPPA_Clustering_CNMF	1	0	0
99	TP-RPPA_Clustering_Consensus_Plus	1	0	0
	Total	6	92	1

This table generated on Mon May 11 09:14:24 2015

Broad GDAC Analyses Status analyses__2015_04_02__gbmlgg Run for Tumor Type: GBMLGG

Broad GDAC Analyses Status
analyses__2015_04_02__gbmlgg Run for Tumor Type: GBMLGG