Broad GDAC Analyses Status
analyses__2015_04_02__skcm Run for Tumor Type: SKCM
Cohort
BCR
Clinical
CN
LowP
Methylation
mRNA
mRNASeq
miR
miRSeq
RPPA
MAF
rawMAF
SKCM
470
447
469
118
470
0
468
0
448
204
343
366
Note that the links below require Broad internal Firehose login credentials.
Pipeline
NotRunnable
Runnable
InProcess
Successful
Unsuccessful
1
TM-Aggregate_AnalysisFeatures
0
0
0
1
0
2
TM-Aggregate_Gene_Status
0
0
0
1
0
3
TM-Aggregate_Molecular_Subtype_Clusters
0
0
0
1
0
4
TM-Append_CustomClinical
0
0
0
1
0
5
TM-CoMut1.5
0
0
0
1
0
6
TM-CoMut2.0
0
0
0
1
0
7
TM-CoMut2CV
0
0
0
1
0
8
TM-CoMutCV
0
0
0
1
0
9
TM-CopyNumber_Clustering_CNMF
0
0
0
1
0
10
TM-CopyNumber_Clustering_CNMF_thresholded
0
0
0
1
0
11
TM-CopyNumber_Gistic2
0
0
0
1
0
12
TM-CopyNumber_Gistic2_Postprocess_Focal
0
0
0
1
0
13
TM-CopyNumberLowPass_Gistic2
0
0
0
1
0
14
TM-Correlate_Clinical_vs_CopyNumber_Arm
0
0
0
1
0
15
TM-Correlate_Clinical_vs_CopyNumber_Focal
0
0
0
1
0
16
TM-Correlate_Clinical_vs_Methylation
0
0
0
1
0
17
TM-Correlate_Clinical_vs_miR
1
0
0
0
0
18
TM-Correlate_Clinical_vs_miRseq
0
0
0
1
0
19
TM-Correlate_Clinical_vs_Molecular_Subtypes
0
0
0
1
0
20
TM-Correlate_Clinical_vs_mRNA
1
0
0
0
0
21
TM-Correlate_Clinical_vs_mRNAseq
0
0
0
1
0
22
TM-Correlate_Clinical_vs_Mutation
0
0
0
1
0
23
TM-Correlate_Clinical_vs_Mutation_APOBEC_Categorical
0
0
0
1
0
24
TM-Correlate_Clinical_vs_Mutation_APOBEC_Continuous
0
0
0
1
0
25
TM-Correlate_Clinical_vs_MutationRate
0
0
0
1
0
26
TM-Correlate_Clinical_vs_RPPA
0
0
0
1
0
27
TM-Correlate_CopyNumber_vs_miR
1
0
0
0
0
28
TM-Correlate_CopyNumber_vs_mRNA
1
0
0
0
0
29
TM-Correlate_CopyNumber_vs_mRNAseq
0
0
0
1
0
30
TM-Correlate_Methylation_vs_mRNA
0
0
0
1
0
31
TM-Correlate_molecularSubtype_vs_CopyNumber_Arm
0
0
0
1
0
32
TM-Correlate_molecularSubtype_vs_CopyNumber_Focal
0
0
0
1
0
33
TM-Correlate_molecularSubtype_vs_Mutation
0
0
0
1
0
34
TM-Correlate_mRNAseq_vs_Mutation_APOBEC
0
0
0
1
0
35
TM-GenerateStickFigures1.5
0
0
0
1
0
36
TM-GenerateStickFigures2.0
0
0
0
1
0
37
TM-GenerateStickFigures2CV
0
0
0
1
0
38
TM-GenerateStickFiguresCV
0
0
0
1
0
39
TM-LegoPlotter1.5
0
0
0
1
0
40
TM-LegoPlotter2.0
0
0
0
1
0
41
TM-LegoPlotter2CV
0
0
0
1
0
42
TM-LegoPlotterCV
0
0
0
1
0
43
TM-Methylation_Clustering_CNMF
0
0
0
1
0
44
TM-miR_Clustering_CNMF
1
0
0
0
0
45
TM-miR_Clustering_Consensus_Plus
1
0
0
0
0
46
TM-miR_FindDirectTargets
1
0
0
0
0
47
TM-miRseq_Clustering_CNMF
0
0
0
1
0
48
TM-miRseq_Clustering_Consensus_Plus
0
0
0
1
0
49
TM-miRseq_FindDirectTargets
0
0
0
1
0
50
TM-miRseq_Mature_Clustering_CNMF
0
0
0
1
0
51
TM-miRseq_Mature_Clustering_Consensus_Plus
0
0
0
1
0
52
TM-mRNA_Clustering_CNMF
1
0
0
0
0
53
TM-mRNA_Clustering_Consensus_Plus
1
0
0
0
0
54
TM-mRNAseq_Clustering_CNMF
0
0
0
1
0
55
TM-mRNAseq_Clustering_Consensus_Plus
0
0
0
1
0
56
TM-Mutation_APOBEC
0
0
0
1
0
57
TM-Mutation_Assessor
0
0
0
1
0
58
TM-Mutation_CHASM
0
0
0
1
0
59
TM-Mutation_CoOccurrence
0
0
0
1
0
60
TM-MutSigNozzleReport1.5
0
0
0
1
0
61
TM-MutSigNozzleReport2.0
0
0
0
1
0
62
TM-MutSigNozzleReport2CV
0
0
0
1
0
63
TM-MutSigNozzleReportCV
0
0
0
1
0
64
TM-MutSigPreprocess1.5
0
0
0
1
0
65
TM-MutSigPreprocess2.0
0
0
0
1
0
66
TM-MutSigRun1.5
0
0
0
1
0
67
TM-MutSigRun2.0
0
0
0
1
0
68
TM-MutSigRun2CV
0
0
0
1
0
69
TM-MutSigRunCV
0
0
0
1
0
70
TM-Paradigm_mRNA
1
0
0
0
0
71
TM-Paradigm_mRNA_And_CopyNumber
1
0
0
0
0
72
TM-Paradigm_Prepare_mRNA
1
0
0
0
0
73
TM-Paradigm_Prepare_mRNA_And_Copy_Number
1
0
0
0
0
74
TM-Paradigm_Prepare_RNASeq
0
0
0
1
0
75
TM-Paradigm_Prepare_RNASeq_And_Copy_Number
0
0
0
1
0
76
TM-Paradigm_Preprocess_mRNA
1
0
0
0
0
77
TM-ParadigmPreprocess_mRNA
1
0
0
0
0
78
TM-Paradigm_Preprocess_mRNA_And_Copy_Number
1
0
0
0
0
79
TM-Paradigm_Preprocess_RNASeq
0
0
0
1
0
80
TM-ParadigmPreprocess_RNASeq
0
0
0
1
0
81
TM-Paradigm_Preprocess_RNASeq_And_Copy_Number
0
0
0
1
0
82
TM-Paradigm_Report_Preprocess_mRNA
1
0
0
0
0
83
TM-Paradigm_Report_Preprocess_mRNA_And_CopyNumber
1
0
0
0
0
84
TM-Paradigm_Report_Preprocess_RNASeq
0
0
0
1
0
85
TM-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number
0
0
0
1
0
86
TM-Paradigm_RNASeq
0
0
0
1
0
87
TM-Paradigm_RNASeq_And_Copy_Number
0
0
0
1
0
88
TM-Pathway_FindEnrichedGenes
1
0
0
0
0
89
TM-Pathway_GSEA_mRNAseq
0
0
0
1
0
90
TM-Pathway_Hotnet
0
0
0
0
1
91
TM-Pathway_Overlaps_MSigDB_MutSig2CV
0
0
0
1
0
92
TM-Pathway_Paradigm_mRNA
1
0
0
0
0
93
TM-Pathway_Paradigm_mRNA_And_Copy_Number
1
0
0
0
0
94
TM-Pathway_Paradigm_RNASeq
0
0
0
1
0
95
TM-Pathway_Paradigm_RNASeq_And_Copy_Number
0
0
0
1
0
96
TM-ProcessCoverageForMutSig1.5
0
0
0
1
0
97
TM-ProcessCoverageForMutSig2.0
0
0
0
1
0
98
TM-RPPA_Clustering_CNMF
0
0
0
1
0
99
TM-RPPA_Clustering_Consensus_Plus
0
0
0
1
0
Total
21
0
0
77
1
This table generated on Mon May 11 09:14:29 2015