Broad GDAC Analyses Status
analyses__2015_04_02__tgct Run for Tumor Type: TGCT

CohortBCRClinicalCNLowPMethylationmRNAmRNASeqmiRmiRSeqRPPAMAFrawMAF
TGCT1501331500150015001501181490

Note that the links below require Broad internal Firehose login credentials.

PipelineNotRunnableRunnableInProcessSuccessfulUnsuccessful
1TP-Aggregate_AnalysisFeatures00010
2TP-Aggregate_Gene_Status00010
3TP-Aggregate_Molecular_Subtype_Clusters00010
4TP-Append_CustomClinical00010
5TP-CoMut1.500010
6TP-CoMut2.000010
7TP-CoMut2CV00010
8TP-CoMutCV00010
9TP-CopyNumber_Clustering_CNMF00010
10TP-CopyNumber_Clustering_CNMF_thresholded00010
11TP-CopyNumber_Gistic200010
12TP-CopyNumber_Gistic2_Postprocess_Focal00010
13TP-CopyNumberLowPass_Gistic210000
14TP-Correlate_Clinical_vs_CopyNumber_Arm00010
15TP-Correlate_Clinical_vs_CopyNumber_Focal00010
16TP-Correlate_Clinical_vs_Methylation00010
17TP-Correlate_Clinical_vs_miR10000
18TP-Correlate_Clinical_vs_miRseq00010
19TP-Correlate_Clinical_vs_Molecular_Subtypes00010
20TP-Correlate_Clinical_vs_mRNA10000
21TP-Correlate_Clinical_vs_mRNAseq00010
22TP-Correlate_Clinical_vs_Mutation00010
23TP-Correlate_Clinical_vs_Mutation_APOBEC_Categorical10000
24TP-Correlate_Clinical_vs_Mutation_APOBEC_Continuous10000
25TP-Correlate_Clinical_vs_MutationRate00010
26TP-Correlate_Clinical_vs_RPPA00010
27TP-Correlate_CopyNumber_vs_miR10000
28TP-Correlate_CopyNumber_vs_mRNA10000
29TP-Correlate_CopyNumber_vs_mRNAseq00010
30TP-Correlate_Methylation_vs_mRNA00010
31TP-Correlate_molecularSubtype_vs_CopyNumber_Arm00010
32TP-Correlate_molecularSubtype_vs_CopyNumber_Focal00010
33TP-Correlate_molecularSubtype_vs_Mutation00010
34TP-Correlate_mRNAseq_vs_Mutation_APOBEC10000
35TP-GenerateStickFigures1.500010
36TP-GenerateStickFigures2.000010
37TP-GenerateStickFigures2CV00010
38TP-GenerateStickFiguresCV00010
39TP-LegoPlotter1.500010
40TP-LegoPlotter2.000010
41TP-LegoPlotter2CV00010
42TP-LegoPlotterCV00010
43TP-Methylation_Clustering_CNMF00010
44TP-miR_Clustering_CNMF10000
45TP-miR_Clustering_Consensus_Plus10000
46TP-miR_FindDirectTargets10000
47TP-miRseq_Clustering_CNMF00010
48TP-miRseq_Clustering_Consensus_Plus00010
49TP-miRseq_FindDirectTargets00010
50TP-miRseq_Mature_Clustering_CNMF00010
51TP-miRseq_Mature_Clustering_Consensus_Plus00010
52TP-mRNA_Clustering_CNMF10000
53TP-mRNA_Clustering_Consensus_Plus10000
54TP-mRNAseq_Clustering_CNMF00010
55TP-mRNAseq_Clustering_Consensus_Plus00010
56TP-Mutation_APOBEC00010
57TP-Mutation_Assessor00010
58TP-Mutation_CHASM00010
59TP-Mutation_CoOccurrence00010
60TP-MutSigNozzleReport1.500010
61TP-MutSigNozzleReport2.000010
62TP-MutSigNozzleReport2CV00010
63TP-MutSigNozzleReportCV00010
64TP-MutSigPreprocess1.500010
65TP-MutSigPreprocess2.000010
66TP-MutSigRun1.500010
67TP-MutSigRun2.000010
68TP-MutSigRun2CV00010
69TP-MutSigRunCV00010
70TP-Paradigm_mRNA10000
71TP-Paradigm_mRNA_And_CopyNumber10000
72TP-Paradigm_Prepare_mRNA10000
73TP-Paradigm_Prepare_mRNA_And_Copy_Number10000
74TP-Paradigm_Prepare_RNASeq00010
75TP-Paradigm_Prepare_RNASeq_And_Copy_Number00010
76TP-Paradigm_Preprocess_mRNA10000
77TP-ParadigmPreprocess_mRNA10000
78TP-Paradigm_Preprocess_mRNA_And_Copy_Number10000
79TP-Paradigm_Preprocess_RNASeq00010
80TP-ParadigmPreprocess_RNASeq00010
81TP-Paradigm_Preprocess_RNASeq_And_Copy_Number00010
82TP-Paradigm_Report_Preprocess_mRNA10000
83TP-Paradigm_Report_Preprocess_mRNA_And_CopyNumber10000
84TP-Paradigm_Report_Preprocess_RNASeq00010
85TP-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number00010
86TP-Paradigm_RNASeq00010
87TP-Paradigm_RNASeq_And_Copy_Number00010
88TP-Pathway_FindEnrichedGenes10000
89TP-Pathway_GSEA_mRNAseq00010
90TP-Pathway_Hotnet00001
91TP-Pathway_Overlaps_MSigDB_MutSig2CV00010
92TP-Pathway_Paradigm_mRNA10000
93TP-Pathway_Paradigm_mRNA_And_Copy_Number10000
94TP-Pathway_Paradigm_RNASeq00010
95TP-Pathway_Paradigm_RNASeq_And_Copy_Number00010
96TP-ProcessCoverageForMutSig1.500010
97TP-ProcessCoverageForMutSig2.000010
98TP-RPPA_Clustering_CNMF00010
99TP-RPPA_Clustering_Consensus_Plus00010
Total2500731

This table generated on Mon May 11 09:14:30 2015