[1] "R version 2.15.3 (2013-03-01)"
[1] "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "dx" ""  
[1] "dx" " " 
[1] "dx" " " 
[1] "opt:  MUTATION_RATE"
[1] "vtyp==survival in table1 generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==multiclass in table1 generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==binary in table1 table generation"
[1] "vtyp==binary in table1 table generation"
[1] "vtyp==multiclass in table1 generation"
[1] "vtyp==binary in table1 table generation"
                          Clinical feature           
DAYS_TO_DEATH_OR_LAST_FUP "DAYS_TO_DEATH_OR_LAST_FUP"
AGE                       "AGE"                      
AGE_mutation.rate         "AGE_mutation rate"        
NEOPLASM_DISEASESTAGE     "NEOPLASM_DISEASESTAGE"    
PATHOLOGY_T_STAGE         "PATHOLOGY_T_STAGE"        
PATHOLOGY_N_STAGE         "PATHOLOGY_N_STAGE"        
GENDER                    "GENDER"                   
RACE                      "RACE"                     
ETHNICITY                 "ETHNICITY"                
                          Statistical test             Significant variables
DAYS_TO_DEATH_OR_LAST_FUP "Cox regression test"        "N=0"                
AGE                       "Spearman correlation test"  "N=2"                
AGE_mutation.rate         "Linear Regression Analysis" "N=0"                
NEOPLASM_DISEASESTAGE     "Kruskal-Wallis test"        "N=2"                
PATHOLOGY_T_STAGE         "Spearman correlation test"  "N=2"                
PATHOLOGY_N_STAGE         "Wilcoxon test"              "N=0"                
GENDER                    "Wilcoxon test"              "N=0"                
RACE                      "Kruskal-Wallis test"        "N=0"                
ETHNICITY                 "Wilcoxon test"              "N=1"                
                          Associated with         
DAYS_TO_DEATH_OR_LAST_FUP " "                     
AGE                       "older"                 
AGE_mutation.rate         " "                     
NEOPLASM_DISEASESTAGE     " "                     
PATHOLOGY_T_STAGE         "higher stage"          
PATHOLOGY_N_STAGE         " "                     
GENDER                    " "                     
RACE                      " "                     
ETHNICITY                 "not hispanic or latino"
                          &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
DAYS_TO_DEATH_OR_LAST_FUP " "                                                                                       
AGE                       "N=2"                                                                                     
AGE_mutation.rate         " "                                                                                       
NEOPLASM_DISEASESTAGE     " "                                                                                       
PATHOLOGY_T_STAGE         "N=2"                                                                                     
PATHOLOGY_N_STAGE         " "                                                                                       
GENDER                    " "                                                                                       
RACE                      " "                                                                                       
ETHNICITY                 "N=1"                                                                                     
                          Associated with           
DAYS_TO_DEATH_OR_LAST_FUP " "                  " "  
AGE                       "younger"            "N=0"
AGE_mutation.rate         " "                  " "  
NEOPLASM_DISEASESTAGE     " "                  " "  
PATHOLOGY_T_STAGE         "lower stage"        "N=0"
PATHOLOGY_N_STAGE         " "                  " "  
GENDER                    " "                  " "  
RACE                      " "                  " "  
ETHNICITY                 "hispanic or latino" "N=0"
[1] "vtyp==survival in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==multiclass in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==binary in basici table generation"
[1] "vtyp==binary in basici table generation"
[1] "vtyp==multiclass in basici table generation"
[1] "vtyp==binary in basici table generation"
