[1] "ofn"        "-oTBRCA-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/BRCA-TP/15076769/BRCA-TP.merged_data.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/BRCA-TP/15086288/transformed.cor.cli.txt"

nPatients in clinical file=1080, in cluster file=1080, common to both=1062
[1]   69 1062
[1] "AMP PEAK  1(1P22.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE 
                          244                           818 
  AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE 
                          244                           818 
[1] "AMP PEAK  2(1Q21.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE 
                          771                           291 
  AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE 
                          771                           291 
[1] "AMP PEAK  3(1Q44) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE 
                        774                         288 
  AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE 
                        774                         288 
[1] "AMP PEAK  4(3P25.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  4(3P25.1) MUTATED AMP PEAK  4(3P25.1) WILD-TYPE 
                          197                           865 
  AMP PEAK  4(3P25.1) MUTATED AMP PEAK  4(3P25.1) WILD-TYPE 
                          197                           865 
[1] "AMP PEAK  5(3Q26.32) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  5(3Q26.32) MUTATED AMP PEAK  5(3Q26.32) WILD-TYPE 
                           337                            725 
  AMP PEAK  5(3Q26.32) MUTATED AMP PEAK  5(3Q26.32) WILD-TYPE 
                           337                            725 
[1] "AMP PEAK  6(4Q13.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  6(4Q13.3) MUTATED AMP PEAK  6(4Q13.3) WILD-TYPE 
                          161                           901 
  AMP PEAK  6(4Q13.3) MUTATED AMP PEAK  6(4Q13.3) WILD-TYPE 
                          161                           901 
[1] "AMP PEAK  7(5P15.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE 
                           387                            675 
  AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE 
                           387                            675 
[1] "AMP PEAK  8(6P23) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  8(6P23) MUTATED AMP PEAK  8(6P23) WILD-TYPE 
                        294                         768 
  AMP PEAK  8(6P23) MUTATED AMP PEAK  8(6P23) WILD-TYPE 
                        294                         768 
[1] "AMP PEAK  9(6Q21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE 
                        198                         864 
  AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE 
                        198                         864 
[1] "AMP PEAK 10(8P11.23) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 10(8P11.23) MUTATED AMP PEAK 10(8P11.23) WILD-TYPE 
                           406                            656 
  AMP PEAK 10(8P11.23) MUTATED AMP PEAK 10(8P11.23) WILD-TYPE 
                           406                            656 
[1] "AMP PEAK 11(8P11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 11(8P11.21) MUTATED AMP PEAK 11(8P11.21) WILD-TYPE 
                           412                            650 
  AMP PEAK 11(8P11.21) MUTATED AMP PEAK 11(8P11.21) WILD-TYPE 
                           412                            650 
[1] "AMP PEAK 12(8Q24.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE 
                           668                            394 
  AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE 
                           668                            394 
[1] "AMP PEAK 13(10P15.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 13(10P15.1) MUTATED AMP PEAK 13(10P15.1) WILD-TYPE 
                           299                            763 
  AMP PEAK 13(10P15.1) MUTATED AMP PEAK 13(10P15.1) WILD-TYPE 
                           299                            763 
[1] "AMP PEAK 14(10Q22.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 14(10Q22.3) MUTATED AMP PEAK 14(10Q22.3) WILD-TYPE 
                           150                            912 
  AMP PEAK 14(10Q22.3) MUTATED AMP PEAK 14(10Q22.3) WILD-TYPE 
                           150                            912 
[1] "AMP PEAK 15(11P13) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 15(11P13) MUTATED AMP PEAK 15(11P13) WILD-TYPE 
                         219                          843 
  AMP PEAK 15(11P13) MUTATED AMP PEAK 15(11P13) WILD-TYPE 
                         219                          843 
[1] "AMP PEAK 16(11Q13.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE 
                           390                            672 
  AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE 
                           390                            672 
[1] "AMP PEAK 17(11Q14.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 17(11Q14.1) MUTATED AMP PEAK 17(11Q14.1) WILD-TYPE 
                           262                            800 
  AMP PEAK 17(11Q14.1) MUTATED AMP PEAK 17(11Q14.1) WILD-TYPE 
                           262                            800 
[1] "AMP PEAK 18(12P13.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 18(12P13.33) MUTATED AMP PEAK 18(12P13.33) WILD-TYPE 
                            279                             783 
  AMP PEAK 18(12P13.33) MUTATED AMP PEAK 18(12P13.33) WILD-TYPE 
                            279                             783 
[1] "AMP PEAK 19(12Q15) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE 
                         274                          788 
  AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE 
                         274                          788 
[1] "AMP PEAK 20(13Q34) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 20(13Q34) MUTATED AMP PEAK 20(13Q34) WILD-TYPE 
                         176                          886 
  AMP PEAK 20(13Q34) MUTATED AMP PEAK 20(13Q34) WILD-TYPE 
                         176                          886 
[1] "AMP PEAK 21(14Q21.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 21(14Q21.1) MUTATED AMP PEAK 21(14Q21.1) WILD-TYPE 
                           217                            845 
  AMP PEAK 21(14Q21.1) MUTATED AMP PEAK 21(14Q21.1) WILD-TYPE 
                           217                            845 
[1] "AMP PEAK 22(15Q26.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE 
                           193                            869 
  AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE 
                           193                            869 
[1] "AMP PEAK 23(17P11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 23(17P11.2) MUTATED AMP PEAK 23(17P11.2) WILD-TYPE 
                           147                            915 
  AMP PEAK 23(17P11.2) MUTATED AMP PEAK 23(17P11.2) WILD-TYPE 
                           147                            915 
[1] "AMP PEAK 24(17Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 24(17Q12) MUTATED AMP PEAK 24(17Q12) WILD-TYPE 
                         329                          733 
  AMP PEAK 24(17Q12) MUTATED AMP PEAK 24(17Q12) WILD-TYPE 
                         329                          733 
[1] "AMP PEAK 25(17Q23.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 25(17Q23.1) MUTATED AMP PEAK 25(17Q23.1) WILD-TYPE 
                           419                            643 
  AMP PEAK 25(17Q23.1) MUTATED AMP PEAK 25(17Q23.1) WILD-TYPE 
                           419                            643 
[1] "AMP PEAK 26(19P13.12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 26(19P13.12) MUTATED AMP PEAK 26(19P13.12) WILD-TYPE 
                            227                             835 
  AMP PEAK 26(19P13.12) MUTATED AMP PEAK 26(19P13.12) WILD-TYPE 
                            227                             835 
[1] "AMP PEAK 27(19Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 27(19Q12) MUTATED AMP PEAK 27(19Q12) WILD-TYPE 
                         278                          784 
  AMP PEAK 27(19Q12) MUTATED AMP PEAK 27(19Q12) WILD-TYPE 
                         278                          784 
[1] "AMP PEAK 28(19Q13.42) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 28(19Q13.42) MUTATED AMP PEAK 28(19Q13.42) WILD-TYPE 
                            271                             791 
  AMP PEAK 28(19Q13.42) MUTATED AMP PEAK 28(19Q13.42) WILD-TYPE 
                            271                             791 
[1] "AMP PEAK 29(20Q13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 29(20Q13.2) MUTATED AMP PEAK 29(20Q13.2) WILD-TYPE 
                           540                            522 
  AMP PEAK 29(20Q13.2) MUTATED AMP PEAK 29(20Q13.2) WILD-TYPE 
                           540                            522 
[1] "DEL PEAK  1(1P36.13) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE 
                           441                            621 
  DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE 
                           441                            621 
[1] "DEL PEAK  2(1P22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE 
                          357                           705 
  DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE 
                          357                           705 
[1] "DEL PEAK  3(2Q37.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE 
                          313                           749 
  DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE 
                          313                           749 
[1] "DEL PEAK  4(3P21.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(3P21.31) MUTATED DEL PEAK  4(3P21.31) WILD-TYPE 
                           344                            718 
  DEL PEAK  4(3P21.31) MUTATED DEL PEAK  4(3P21.31) WILD-TYPE 
                           344                            718 
[1] "DEL PEAK  5(4P16.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(4P16.3) MUTATED DEL PEAK  5(4P16.3) WILD-TYPE 
                          333                           729 
  DEL PEAK  5(4P16.3) MUTATED DEL PEAK  5(4P16.3) WILD-TYPE 
                          333                           729 
[1] "DEL PEAK  6(4Q35.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(4Q35.1) MUTATED DEL PEAK  6(4Q35.1) WILD-TYPE 
                          340                           722 
  DEL PEAK  6(4Q35.1) MUTATED DEL PEAK  6(4Q35.1) WILD-TYPE 
                          340                           722 
[1] "DEL PEAK  7(5Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(5Q11.2) MUTATED DEL PEAK  7(5Q11.2) WILD-TYPE 
                          274                           788 
  DEL PEAK  7(5Q11.2) MUTATED DEL PEAK  7(5Q11.2) WILD-TYPE 
                          274                           788 
[1] "DEL PEAK  8(5Q21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(5Q21.3) MUTATED DEL PEAK  8(5Q21.3) WILD-TYPE 
                          265                           797 
  DEL PEAK  8(5Q21.3) MUTATED DEL PEAK  8(5Q21.3) WILD-TYPE 
                          265                           797 
[1] "DEL PEAK  9(6P25.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(6P25.3) MUTATED DEL PEAK  9(6P25.3) WILD-TYPE 
                          202                           860 
  DEL PEAK  9(6P25.3) MUTATED DEL PEAK  9(6P25.3) WILD-TYPE 
                          202                           860 
[1] "DEL PEAK 10(6Q15) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(6Q15) MUTATED DEL PEAK 10(6Q15) WILD-TYPE 
                        353                         709 
  DEL PEAK 10(6Q15) MUTATED DEL PEAK 10(6Q15) WILD-TYPE 
                        353                         709 
[1] "DEL PEAK 11(6Q27) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE 
                        370                         692 
  DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE 
                        370                         692 
[1] "DEL PEAK 12(7P22.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(7P22.3) MUTATED DEL PEAK 12(7P22.3) WILD-TYPE 
                          135                           927 
  DEL PEAK 12(7P22.3) MUTATED DEL PEAK 12(7P22.3) WILD-TYPE 
                          135                           927 
[1] "DEL PEAK 13(7Q36.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE 
                          197                           865 
  DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE 
                          197                           865 
[1] "DEL PEAK 14(8P23.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE 
                          552                           510 
  DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE 
                          552                           510 
[1] "DEL PEAK 15(8P11.21) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(8P11.21) MUTATED DEL PEAK 15(8P11.21) WILD-TYPE 
                           198                            864 
  DEL PEAK 15(8P11.21) MUTATED DEL PEAK 15(8P11.21) WILD-TYPE 
                           198                            864 
[1] "DEL PEAK 16(9P23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE 
                        321                         741 
  DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE 
                        321                         741 
[1] "DEL PEAK 17(9P21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE 
                          358                           704 
  DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE 
                          358                           704 
[1] "DEL PEAK 18(9Q21.11) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(9Q21.11) MUTATED DEL PEAK 18(9Q21.11) WILD-TYPE 
                           292                            770 
  DEL PEAK 18(9Q21.11) MUTATED DEL PEAK 18(9Q21.11) WILD-TYPE 
                           292                            770 
[1] "DEL PEAK 19(9Q34.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 19(9Q34.2) MUTATED DEL PEAK 19(9Q34.2) WILD-TYPE 
                          293                           769 
  DEL PEAK 19(9Q34.2) MUTATED DEL PEAK 19(9Q34.2) WILD-TYPE 
                          293                           769 
[1] "DEL PEAK 20(10Q23.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 20(10Q23.31) MUTATED DEL PEAK 20(10Q23.31) WILD-TYPE 
                            315                             747 
  DEL PEAK 20(10Q23.31) MUTATED DEL PEAK 20(10Q23.31) WILD-TYPE 
                            315                             747 
[1] "DEL PEAK 21(10Q26.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE 
                           315                            747 
  DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE 
                           315                            747 
[1] "DEL PEAK 22(11P15.5) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE 
                           303                            759 
  DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE 
                           303                            759 
[1] "DEL PEAK 23(11Q13.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 23(11Q13.1) MUTATED DEL PEAK 23(11Q13.1) WILD-TYPE 
                           238                            824 
  DEL PEAK 23(11Q13.1) MUTATED DEL PEAK 23(11Q13.1) WILD-TYPE 
                           238                            824 
[1] "DEL PEAK 24(11Q23.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 24(11Q23.3) MUTATED DEL PEAK 24(11Q23.3) WILD-TYPE 
                           539                            523 
  DEL PEAK 24(11Q23.3) MUTATED DEL PEAK 24(11Q23.3) WILD-TYPE 
                           539                            523 
[1] "DEL PEAK 25(11Q25) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 25(11Q25) MUTATED DEL PEAK 25(11Q25) WILD-TYPE 
                         505                          557 
  DEL PEAK 25(11Q25) MUTATED DEL PEAK 25(11Q25) WILD-TYPE 
                         505                          557 
[1] "DEL PEAK 26(12P13.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 26(12P13.1) MUTATED DEL PEAK 26(12P13.1) WILD-TYPE 
                           183                            879 
  DEL PEAK 26(12P13.1) MUTATED DEL PEAK 26(12P13.1) WILD-TYPE 
                           183                            879 
[1] "DEL PEAK 27(12Q23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE 
                           197                            865 
  DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE 
                           197                            865 
[1] "DEL PEAK 28(12Q24.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 28(12Q24.31) MUTATED DEL PEAK 28(12Q24.31) WILD-TYPE 
                            205                             857 
  DEL PEAK 28(12Q24.31) MUTATED DEL PEAK 28(12Q24.31) WILD-TYPE 
                            205                             857 
[1] "DEL PEAK 29(13Q14.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 29(13Q14.2) MUTATED DEL PEAK 29(13Q14.2) WILD-TYPE 
                           489                            573 
  DEL PEAK 29(13Q14.2) MUTATED DEL PEAK 29(13Q14.2) WILD-TYPE 
                           489                            573 
[1] "DEL PEAK 30(14Q24.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 30(14Q24.1) MUTATED DEL PEAK 30(14Q24.1) WILD-TYPE 
                           346                            716 
  DEL PEAK 30(14Q24.1) MUTATED DEL PEAK 30(14Q24.1) WILD-TYPE 
                           346                            716 
[1] "DEL PEAK 31(15Q13.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 31(15Q13.1) MUTATED DEL PEAK 31(15Q13.1) WILD-TYPE 
                           369                            693 
  DEL PEAK 31(15Q13.1) MUTATED DEL PEAK 31(15Q13.1) WILD-TYPE 
                           369                            693 
[1] "DEL PEAK 32(16Q24.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 32(16Q24.3) MUTATED DEL PEAK 32(16Q24.3) WILD-TYPE 
                           678                            384 
  DEL PEAK 32(16Q24.3) MUTATED DEL PEAK 32(16Q24.3) WILD-TYPE 
                           678                            384 
[1] "DEL PEAK 33(17P12) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 33(17P12) MUTATED DEL PEAK 33(17P12) WILD-TYPE 
                         638                          424 
  DEL PEAK 33(17P12) MUTATED DEL PEAK 33(17P12) WILD-TYPE 
                         638                          424 
[1] "DEL PEAK 34(17Q21.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 34(17Q21.31) MUTATED DEL PEAK 34(17Q21.31) WILD-TYPE 
                            362                             700 
  DEL PEAK 34(17Q21.31) MUTATED DEL PEAK 34(17Q21.31) WILD-TYPE 
                            362                             700 
[1] "DEL PEAK 35(18Q23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 35(18Q23) MUTATED DEL PEAK 35(18Q23) WILD-TYPE 
                         349                          713 
  DEL PEAK 35(18Q23) MUTATED DEL PEAK 35(18Q23) WILD-TYPE 
                         349                          713 
[1] "DEL PEAK 36(19P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 36(19P13.3) MUTATED DEL PEAK 36(19P13.3) WILD-TYPE 
                           356                            706 
  DEL PEAK 36(19P13.3) MUTATED DEL PEAK 36(19P13.3) WILD-TYPE 
                           356                            706 
[1] "DEL PEAK 37(19Q13.32) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 37(19Q13.32) MUTATED DEL PEAK 37(19Q13.32) WILD-TYPE 
                            212                             850 
  DEL PEAK 37(19Q13.32) MUTATED DEL PEAK 37(19Q13.32) WILD-TYPE 
                            212                             850 
[1] "DEL PEAK 38(20P13) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 38(20P13) MUTATED DEL PEAK 38(20P13) WILD-TYPE 
                         159                          903 
  DEL PEAK 38(20P13) MUTATED DEL PEAK 38(20P13) WILD-TYPE 
                         159                          903 
[1] "DEL PEAK 39(21Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 39(21Q11.2) MUTATED DEL PEAK 39(21Q11.2) WILD-TYPE 
                           212                            850 
  DEL PEAK 39(21Q11.2) MUTATED DEL PEAK 39(21Q11.2) WILD-TYPE 
                           212                            850 
[1] "DEL PEAK 40(22Q13.32) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 40(22Q13.32) MUTATED DEL PEAK 40(22Q13.32) WILD-TYPE 
                            480                             582 
  DEL PEAK 40(22Q13.32) MUTATED DEL PEAK 40(22Q13.32) WILD-TYPE 
                            480                             582 
[1] "data2feature, selection=ALL"
 [1] "YEARS_TO_BIRTH"                        
 [2] "VITAL_STATUS"                          
 [3] "DAYS_TO_DEATH"                         
 [4] "DAYS_TO_LAST_FOLLOWUP"                 
 [5] "PRIMARY_SITE_OF_DISEASE"               
 [6] "NEOPLASM_DISEASESTAGE"                 
 [7] "PATHOLOGY_T_STAGE"                     
 [8] "PATHOLOGY_N_STAGE"                     
 [9] "PATHOLOGY_M_STAGE"                     
[10] "DCC_UPLOAD_DATE"                       
[11] "GENDER"                                
[12] "DATE_OF_INITIAL_PATHOLOGIC_DIAGNOSIS"  
[13] "DAYS_TO_LAST_KNOWN_ALIVE"              
[14] "RADIATION_THERAPY"                     
[15] "HISTOLOGICAL_TYPE"                     
[16] "RADIATIONS_RADIATION_REGIMENINDICATION"
[17] "NUMBER_OF_LYMPH_NODES"                 
[18] "RACE"                                  
[19] "ETHNICITY"                             
[20] "BATCH_NUMBER"                          

Input Data has 20 rows and 1062 columns.

[1] "Batch" "20"   
[1] "Last Follow UP"
Variable 1:'YEARS_TO_BIRTH':	nDistinctValues=65,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'VITAL_STATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 3:'DAYS_TO_DEATH':	nDistinctValues=127,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
[1] "exclude grep('DAYS_?TO', vnms) to deal with survival parameters seperately"
Variable 4:'DAYS_TO_LAST_FOLLOWUP':	nDistinctValues=719,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
[1] "exclude grep('FOLLOWUP', vnms) to deal with survival parameters seperately"
Variable 5:'PRIMARY_SITE_OF_DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "PRIMARY_SITE_OF_DISEASE is excluded in the analysis because there is no more than two cases of (unique non-NA values)"
Variable 6:'NEOPLASM_DISEASESTAGE':	nDistinctValues=13,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'PATHOLOGY_T_STAGE':	nDistinctValues=13,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'PATHOLOGY_N_STAGE':	nDistinctValues=16,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'PATHOLOGY_M_STAGE':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'DCC_UPLOAD_DATE':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "exclude grep('DATE', vnms) to deal with survival parameters seperately"
Variable 11:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'DATE_OF_INITIAL_PATHOLOGIC_DIAGNOSIS':	nDistinctValues=25,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
[1] "exclude grep('DATE', vnms) to deal with survival parameters seperately"
Variable 13:'DAYS_TO_LAST_KNOWN_ALIVE':	nDistinctValues=2,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
[1] "DAYS_TO_LAST_KNOWN_ALIVE is excluded in the analysis because there is no more than two cases of (freq>=3) when the number of (unique non-NA values) is two"
            315     412    
freq.values "1"     "1"    
freq >=3    "FALSE" "FALSE"
Variable 14:'RADIATION_THERAPY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "RADIATION_THERAPY is excluded in the analysis because there is no more than two cases of (unique non-NA values)"
Variable 15:'HISTOLOGICAL_TYPE':	nDistinctValues=8,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 16:'RADIATIONS_RADIATION_REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 17:'NUMBER_OF_LYMPH_NODES':	nDistinctValues=31,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 18:'RACE':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 19:'ETHNICITY':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 20:'BATCH_NUMBER':	nDistinctValues=44,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] NA
[1] "## **** detect survival parameters (defined in index such as ind_OS, ind_MFS, ind_RFS, ind_RFS, ind_BCR and ind_d2ssd) *** ##"
[1] "detected survival parameters using [ind_OS, overall_survival]"
[1] "survival parameters accumulated so far"
[1] "DAYS_TO_DEATH_OR_LAST_FUP" "VITAL_STATUS"             
[1] "detected survival parameters using [ind_OS, curated_overall_survival]"
[1] "survival parameters accumulated so far"
[1] "DAYS_TO_DEATH_OR_LAST_FUP" "VITAL_STATUS"             
[1] "detected survival parameters using [ind_TCGAOS]"
[1] "survival parameters accumulated so far"
[1] "DAYS_TO_DEATH_OR_LAST_FUP" "VITAL_STATUS"             
[1] "detected survivial parameters using [ind_MFS]"
[1] "survival parameters accumulated so far"
[1] "DAYS_TO_DEATH_OR_LAST_FUP" "VITAL_STATUS"             
[1] "detected survival parameters using [ind_RFS]"
[1] "survival parameters accumulated so far"
[1] "DAYS_TO_DEATH_OR_LAST_FUP" "VITAL_STATUS"             
[1] "detected survival parameters using [ind_BCR]"
[1] "survival parameters accumulated so far"
[1] "DAYS_TO_DEATH_OR_LAST_FUP" "VITAL_STATUS"             
[1] "detected survival parameters using [ind_Progression]"
[1] "survival parameters accumulated so far"
[1] "DAYS_TO_DEATH_OR_LAST_FUP" "VITAL_STATUS"             
[1] "detected survival parameters using [index_additional_survival_time]"
[1] "survival parameters accumulated so far"
[1] "DAYS_TO_DEATH_OR_LAST_FUP" "VITAL_STATUS"             
[1] "detected survival parameters using condition: [is.null(surv.mat)&&(selection=='SURV')]"
[1] "survival parameters accumulated so far"
[1] "DAYS_TO_DEATH_OR_LAST_FUP" "VITAL_STATUS"             
[1] "************ conversion from categorical data to rank data ********** "
[1] "PATHOLOGY_T_STAGE is converted to numeric rank data using modified categoies"
[1] "PATHOLOGY_N_STAGE is converted to numeric rank data using modified categoies"
[1] "PATHOLOGY_M_STAGE is converted to rank data using modified categoies"
[1] "****** SUMMARY ***** "
Output Data has 1062 columns, 1 survival variables, and 11 non-survival variables.
[1] "* survival variables: "
[1] "DAYS_TO_DEATH_OR_LAST_FUP" "VITAL_STATUS"             
[1] "* non-survival variables: "
 [1] "YEARS_TO_BIRTH"                        
 [2] "NEOPLASM_DISEASESTAGE"                 
 [3] "PATHOLOGY_T_STAGE"                     
 [4] "PATHOLOGY_N_STAGE"                     
 [5] "PATHOLOGY_M_STAGE"                     
 [6] "GENDER"                                
 [7] "HISTOLOGICAL_TYPE"                     
 [8] "RADIATIONS_RADIATION_REGIMENINDICATION"
 [9] "NUMBER_OF_LYMPH_NODES"                 
[10] "RACE"                                  
[11] "ETHNICITY"                             
YEARS_TO_BIRTH, nv=65, binary=FALSE, numeric=TRUE
NEOPLASM_DISEASESTAGE, nv=13, binary=FALSE, numeric=FALSE
PATHOLOGY_T_STAGE, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.T',vnm)"
vv
 T1  T2  T3  T4 
272 616 130  40 
[1] "table(vv)"
vv
 T1  T2  T3  T4 
272 616 130  40 
$ClinVariableName
[1] "PATHOLOGY_T_STAGE"

$Table
vv
 T1  T2  T3  T4 
272 616 130  40 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


 T1  T2  T3  T4 
272 616 130  40 
PATHOLOGY_N_STAGE, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.N',vnm)"
vv
 N0  N1  N2  N3 
501 350 117  75 
[1] "table(vv)"
vv
 N0  N1  N2  N3 
501 350 117  75 
$ClinVariableName
[1] "PATHOLOGY_N_STAGE"

$Table
vv
 N0  N1  N2  N3 
501 350 117  75 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


 N0  N1  N2  N3 
501 350 117  75 
PATHOLOGY_M_STAGE, nv=2, binary=FALSE, numeric=TRUE
GENDER, nv=2, binary=FALSE, numeric=FALSE
HISTOLOGICAL_TYPE, nv=8, binary=FALSE, numeric=FALSE
RADIATIONS_RADIATION_REGIMENINDICATION, nv=2, binary=FALSE, numeric=FALSE
NUMBER_OF_LYMPH_NODES, nv=31, binary=FALSE, numeric=TRUE
RACE, nv=4, binary=FALSE, numeric=FALSE
ETHNICITY, nv=2, binary=FALSE, numeric=FALSE

Clustering(1) Variable = AMP PEAK  1(1P22.3) MUTATION ANALYSIS
D1V1, survival
                               sevent
clus2                             0   1
  AMP PEAK  1(1P22.3) MUTATED   212  31
  AMP PEAK  1(1P22.3) WILD-TYPE 704  97
  AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE 
                          243                           801 
  AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE 
                           31                            97 
$`AMP PEAK  1(1P22.3) MUTATED`
TCGA-3C-AAAU TCGA-5T-A9QA TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SM TCGA-A1-A0SP 
      129.14         9.96        14.37        43.43         7.96        19.20 
TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04W TCGA-A2-A0CM TCGA-A2-A0CU TCGA-A2-A0D0 
       73.84        87.25       101.98        24.79         5.19        67.33 
TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0ET TCGA-A2-A0SW TCGA-A2-A0T2 TCGA-A2-A0T5 
       33.76        61.58        35.05        44.88         8.38        17.46 
TCGA-A2-A0T7 TCGA-A2-A0YD TCGA-A2-A0YI TCGA-A2-A0YK TCGA-A2-A0YM TCGA-A2-A1G0 
       20.75        25.28        49.48        19.33        31.73        20.25 
TCGA-A2-A25B TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XU TCGA-A2-A3XX TCGA-A2-A3XZ 
       42.44        33.93        83.01        29.98        47.31        50.37 
TCGA-A2-A3Y0 TCGA-A7-A0CE TCGA-A7-A0DA TCGA-A7-A13D TCGA-A7-A13E TCGA-A7-A13F 
       38.37        35.31        35.67        31.73        20.19        25.15 
TCGA-A7-A26F TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A6VV TCGA-A7-A6VW TCGA-A7-A6VX 
       24.26        14.50        21.17        10.29         9.37        10.42 
TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A07O TCGA-A8-A07S TCGA-A8-A08C TCGA-A8-A08T 
       26.01         1.02         9.99         7.99        28.96       112.08 
TCGA-A8-A092 TCGA-A8-A093 TCGA-A8-A097 TCGA-A8-A099 TCGA-A8-A09E TCGA-A8-A09I 
       30.97        17.95        12.00         9.99        49.05        45.07 
TCGA-A8-A09M TCGA-A8-A09W TCGA-A8-A0A6 TCGA-A8-A0AB TCGA-AC-A2BK TCGA-AC-A2BM 
       33.07         0.99        21.04        17.03        38.53        99.35 
TCGA-AC-A2QJ TCGA-AC-A3W5 TCGA-AC-A3W6 TCGA-AC-A62X TCGA-AC-A6IV TCGA-AC-A6IW 
        2.27        16.57        19.79        13.71        18.67        13.58 
TCGA-AC-A6NO TCGA-AC-A7VC TCGA-AC-A8OQ TCGA-AN-A03Y TCGA-AN-A04D TCGA-AN-A0AL 
        1.68         0.03         1.12         0.33         1.71         6.51 
TCGA-AN-A0FF TCGA-AN-A0FL TCGA-AN-A0FT TCGA-AN-A0FW TCGA-AN-A0FY TCGA-AN-A0FZ 
        5.65         7.59         7.04         0.36         0.33         0.33 
TCGA-AN-A0XU TCGA-AO-A0J2 TCGA-AO-A0J6 TCGA-AO-A0J8 TCGA-AO-A0JL TCGA-AO-A125 
        0.33        32.78        37.48        22.36        55.33        99.25 
TCGA-AO-A128 TCGA-AO-A12F TCGA-AQ-A04L TCGA-AQ-A54N TCGA-AR-A0TS TCGA-AR-A0U0 
      106.78        48.36       130.09         2.56        74.79        65.36 
TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AQ TCGA-AR-A1AR TCGA-AR-A1AV TCGA-AR-A1AY 
       75.55        61.84        43.07        17.23        61.28        33.73 
TCGA-AR-A24H TCGA-AR-A24K TCGA-AR-A24Z TCGA-AR-A256 TCGA-AR-A2LL TCGA-AR-A2LQ 
      160.90        50.89        79.00        93.83        66.15        40.54 
TCGA-AR-A2LR TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I9 TCGA-B6-A0IB TCGA-B6-A0IJ 
       20.38        77.62       143.38        12.13       129.57       176.98 
TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RN TCGA-B6-A0RP TCGA-B6-A0RU TCGA-B6-A0WX 
      140.88       211.56       172.96       102.77       131.21        21.47 
TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A2IU TCGA-B6-A402 TCGA-B6-A408 TCGA-B6-A40C 
       43.59       101.52       170.17        74.99        68.12        71.15 
TCGA-BH-A0AW TCGA-BH-A0B3 TCGA-BH-A0BA TCGA-BH-A0BD TCGA-BH-A0BZ TCGA-BH-A0C1 
       20.45        39.55        37.22        18.21        49.05        44.02 
TCGA-BH-A0DL TCGA-BH-A0DP TCGA-BH-A0DV TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E6 
       48.23        15.65        67.86        16.27         4.41         9.63 
TCGA-BH-A0EE TCGA-BH-A0GY TCGA-BH-A0HK TCGA-BH-A18L TCGA-BH-A18S TCGA-BH-A18V 
       31.00        30.35         5.85        26.66        66.05        51.16 
TCGA-BH-A1F0 TCGA-BH-A1F2 TCGA-BH-A1FC TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FN 
       25.81        31.53       114.15        63.35        55.00        72.07 
TCGA-BH-A1FU TCGA-BH-A28Q TCGA-BH-A5IZ TCGA-C8-A12P TCGA-C8-A12V TCGA-C8-A131 
       72.07         6.44        18.64        11.77        12.66         2.24 
TCGA-C8-A26Y TCGA-C8-A274 TCGA-C8-A27B TCGA-C8-A8HR TCGA-D8-A13Y TCGA-D8-A142 
        0.43         9.53         0.99        13.41        11.90        13.97 
TCGA-D8-A143 TCGA-D8-A147 TCGA-D8-A1JB TCGA-D8-A1JL TCGA-D8-A1X7 TCGA-D8-A1XA 
       14.17        19.20        18.71        20.09        16.73        27.58 
TCGA-D8-A1XG TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XQ TCGA-D8-A1XR TCGA-D8-A1XT 
       14.73        21.83        14.50        16.41        15.85         6.35 
TCGA-D8-A1XW TCGA-D8-A27H TCGA-D8-A27R TCGA-D8-A27V TCGA-D8-A73W TCGA-E2-A107 
       12.66        13.05        10.09        12.53         8.02        34.42 
TCGA-E2-A14R TCGA-E2-A14X TCGA-E2-A150 TCGA-E2-A159 TCGA-E2-A15A TCGA-E2-A15D 
       38.60        31.96        25.41        25.05        23.34        17.29 
TCGA-E2-A15J TCGA-E2-A15R TCGA-E2-A1AZ TCGA-E2-A1BD TCGA-E2-A1II TCGA-E2-A1IN 
       19.40        17.06        60.53        17.10        33.70        22.19 
TCGA-E2-A1L7 TCGA-E2-A1LE TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A2P6 TCGA-E9-A1N8 
       27.42        28.90       106.75       102.61         5.52        12.00 
TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1R5 TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RG 
       12.59        35.77         3.02        32.09        40.24        21.27 
TCGA-E9-A1RH TCGA-E9-A22B TCGA-E9-A244 TCGA-E9-A249 TCGA-E9-A3QA TCGA-E9-A54Y 
       34.59        22.75         0.69         7.13        30.18        23.84 
TCGA-E9-A5UP TCGA-E9-A6HE TCGA-EW-A1J5 TCGA-EW-A1OV TCGA-EW-A1OW TCGA-EW-A1OZ 
       14.40        15.39        15.68        25.94        22.82        40.41 
TCGA-EW-A1P0 TCGA-EW-A1P8 TCGA-EW-A1PB TCGA-EW-A423 TCGA-GI-A2C8 TCGA-GI-A2C9 
       41.13         7.86        19.99        10.16         7.40       109.87 
TCGA-GM-A2DC TCGA-GM-A2DD TCGA-GM-A2DH TCGA-GM-A3NY TCGA-GM-A4E0 TCGA-HN-A2NL 
       83.34        75.02        72.10        38.20        72.03         2.60 
TCGA-HN-A2OB TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LD-A74U TCGA-LD-A7W5 TCGA-LL-A441 
       62.43        11.84        11.57        13.22         7.10        11.44 
TCGA-LL-A5YL TCGA-LL-A5YO TCGA-LL-A6FP TCGA-LL-A6FR TCGA-LL-A73Y TCGA-LL-A7SZ 
       17.06        14.47        22.26        16.08        15.68        14.70 
TCGA-OL-A5D8 TCGA-OL-A5RW TCGA-OL-A66K TCGA-OL-A6VO TCGA-PL-A8LZ TCGA-S3-A6ZF 
       31.99        36.36        41.92        28.21         9.93        16.50 
TCGA-S3-AA10 TCGA-UU-A93S TCGA-WT-AB44 
       15.39         3.81        29.03 

$`AMP PEAK  1(1P22.3) WILD-TYPE`
TCGA-3C-AALI TCGA-3C-AALJ TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT0 TCGA-5L-AAT1 
      131.67        42.81        40.14        11.44        48.56        48.36 
TCGA-A1-A0SB TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI TCGA-A1-A0SJ 
        8.52        48.10        14.27        47.24        20.88        13.68 
TCGA-A1-A0SK TCGA-A1-A0SN TCGA-A1-A0SO TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04P 
       31.79        39.32        28.01        18.21       104.81        18.02 
TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04V TCGA-A2-A04X TCGA-A2-A04Y TCGA-A2-A0CK 
       78.41       121.94        63.12        55.43        36.13       136.73 
TCGA-A2-A0CL TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CQ TCGA-A2-A0CR TCGA-A2-A0CS 
       99.12       114.81        92.48        88.60       107.93        75.55 
TCGA-A2-A0CT TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0CX TCGA-A2-A0D1 TCGA-A2-A0D4 
       75.25        98.99       107.93        56.81        34.55        25.22 
TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0EQ TCGA-A2-A0ER 
      101.72       134.40        80.28       107.61        79.76        74.40 
TCGA-A2-A0ES TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0EY 
       72.00        34.29        31.82        61.94        24.72        63.29 
TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SX TCGA-A2-A0SY TCGA-A2-A0T0 
       99.19        54.64        27.12        50.43        44.28        17.52 
TCGA-A2-A0T1 TCGA-A2-A0T3 TCGA-A2-A0T4 TCGA-A2-A0T6 TCGA-A2-A0YC TCGA-A2-A0YE 
       17.13        49.84        20.52        18.90        32.55        18.21 
TCGA-A2-A0YF TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A0YJ TCGA-A2-A0YL TCGA-A2-A0YT 
       50.47        21.90        21.67        18.61        48.46        23.77 
TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1FX TCGA-A2-A1FZ TCGA-A2-A1G1 TCGA-A2-A1G4 
       23.47        17.36        60.72        22.45        19.20        19.56 
TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25A TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25E 
       16.47        52.47       107.70        17.19        18.15       105.34 
TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XY 
       10.59        20.88        39.65        32.75        49.48        34.98 
TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S2 
        7.30        24.39        21.30        23.21        26.96        21.14 
TCGA-A2-A4S3 TCGA-A7-A0CD TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0CJ TCGA-A7-A0D9 
       21.90        38.30        34.29        35.47        30.61        37.45 
TCGA-A7-A0DB TCGA-A7-A0DC TCGA-A7-A13G TCGA-A7-A13H TCGA-A7-A26E TCGA-A7-A26G 
       33.11        29.79        23.61        29.56        31.36        23.74 
TCGA-A7-A26H TCGA-A7-A26I TCGA-A7-A26J TCGA-A7-A2KD TCGA-A7-A3IY TCGA-A7-A3IZ 
       23.80        21.73        20.61        22.32        11.34        10.59 
TCGA-A7-A3J0 TCGA-A7-A3J1 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A426 TCGA-A7-A4SA 
       10.29        11.28        13.41        14.70        11.97        14.93 
TCGA-A7-A4SB TCGA-A7-A4SF TCGA-A7-A56D TCGA-A7-A5ZV TCGA-A7-A5ZW TCGA-A7-A5ZX 
       13.74        17.92        14.73        12.10        10.72        11.05 
TCGA-A7-A6VY TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06R TCGA-A8-A06T 
        8.75        13.02        13.02         1.02        17.98        53.06 
TCGA-A8-A06U TCGA-A8-A06X TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A079 TCGA-A8-A07B 
       29.03        31.00        17.03        53.98         9.01        43.00 
TCGA-A8-A07E TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07L 
       19.99        18.97        18.97        14.01        12.00        32.05 
TCGA-A8-A07P TCGA-A8-A07R TCGA-A8-A07U TCGA-A8-A07W TCGA-A8-A07Z TCGA-A8-A082 
       10.98         8.98        24.99         9.99        45.07        18.05 
TCGA-A8-A084 TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08B TCGA-A8-A08F 
       15.06        36.95        13.02         0.99        38.01        33.01 
TCGA-A8-A08G TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08O TCGA-A8-A08P 
       19.96        12.00        37.05         9.99        31.00        31.00 
TCGA-A8-A08R TCGA-A8-A08S TCGA-A8-A08X TCGA-A8-A08Z TCGA-A8-A091 TCGA-A8-A095 
        0.99        33.01        43.00        40.01        33.01        41.98 
TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09C TCGA-A8-A09D TCGA-A8-A09K TCGA-A8-A09N 
        9.99        12.00         1.02        50.04        29.98         1.02 
TCGA-A8-A09Q TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09X TCGA-A8-A0A1 
       25.02         8.98        19.04        15.02        14.01        12.00 
TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A7 TCGA-A8-A0A9 TCGA-A8-A0AD TCGA-AC-A23C 
       19.04        13.02         0.99        27.02        38.04         0.95 
TCGA-AC-A23E TCGA-AC-A23G TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2FB TCGA-AC-A2FF 
        2.37        10.85         5.72         1.48        40.57        55.43 
TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A2QH TCGA-AC-A2QI 
       36.99        38.79        26.04        50.70        33.04         0.92 
TCGA-AC-A3BB TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3TN TCGA-AC-A3YI 
       32.45        16.31        14.83        22.19        14.99        23.24 
TCGA-AC-A3YJ TCGA-AC-A5XS TCGA-AC-A62V TCGA-AC-A62Y TCGA-AC-A6IX TCGA-AC-A7VB 
       24.79         1.55        11.44        17.42        12.26         8.22 
TCGA-AC-A8OP TCGA-AC-A8OR TCGA-AC-A8OS TCGA-AN-A03X TCGA-AN-A041 TCGA-AN-A046 
       20.19         1.32         2.30         0.33         0.23         0.33 
TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A0AJ TCGA-AN-A0AK TCGA-AN-A0AM 
        0.62         2.96         1.78         9.96         7.36         0.16 
TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0FJ TCGA-AN-A0FK 
        0.33         0.33         0.33         6.44         7.96         7.00 
TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FV TCGA-AN-A0FX TCGA-AN-A0XL TCGA-AN-A0XN 
        7.17         6.28         0.33         0.33         0.33         0.33 
TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XV 
       12.33         0.30         0.33         0.33         0.33         5.33 
TCGA-AN-A0XW TCGA-AO-A03L TCGA-AO-A03M TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03P 
        5.59        80.28        61.35        66.77        81.63        95.70 
TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J3 TCGA-AO-A0J4 
       68.75        47.87        58.95        29.13        21.40        52.18 
TCGA-AO-A0J5 TCGA-AO-A0J7 TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JC 
       26.04        20.32        53.03        21.53        50.70        50.86 
TCGA-AO-A0JD TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JG TCGA-AO-A0JI TCGA-AO-A0JJ 
       72.00        76.77        21.37        26.24        50.24        62.04 
TCGA-AO-A0JM TCGA-AO-A124 TCGA-AO-A126 TCGA-AO-A129 TCGA-AO-A12A TCGA-AO-A12B 
       71.80       102.58       108.72       108.03        90.58        98.27 
TCGA-AO-A12D TCGA-AO-A12E TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP 
       64.04        57.30        41.62        28.37        14.73        82.62 
TCGA-AO-A1KQ TCGA-AO-A1KR TCGA-AO-A1KS TCGA-AO-A1KT TCGA-AQ-A04H TCGA-AQ-A04J 
       61.87        70.39         0.53        17.79        24.79        26.93 
TCGA-AQ-A0Y5 TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AQ-A54O TCGA-AQ-A7U7 TCGA-AR-A0TP 
        5.65        15.62        32.52        32.91        19.20       111.32 
TCGA-AR-A0TQ TCGA-AR-A0TR TCGA-AR-A0TT TCGA-AR-A0TV TCGA-AR-A0TW TCGA-AR-A0TX 
       73.64         5.26        86.66        42.35        98.93        64.83 
TCGA-AR-A0TY TCGA-AR-A0TZ TCGA-AR-A0U1 TCGA-AR-A0U2 TCGA-AR-A0U3 TCGA-AR-A0U4 
       55.86       107.24       101.95        83.87       114.02        85.97 
TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AM TCGA-AR-A1AN TCGA-AR-A1AO 
       52.77        51.25        48.82        76.11        43.73        43.56 
TCGA-AR-A1AP TCGA-AR-A1AS TCGA-AR-A1AU TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A24L 
       39.98        37.81        76.21        63.62        62.14        94.22 
TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24Q TCGA-AR-A24R 
       96.89        78.51        84.20         2.76       104.28        87.22 
TCGA-AR-A24S TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A24X 
       97.84        76.01        53.36        85.35        50.96        83.77 
TCGA-AR-A250 TCGA-AR-A251 TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A255 TCGA-AR-A2LE 
       89.00        78.48        73.18        72.76        58.92       143.21 
TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO 
       20.25        62.86        54.21        52.11        38.17        39.39 
TCGA-AR-A5QM TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I5 TCGA-B6-A0IA 
       54.74        16.04        20.45        10.59       149.59       220.90 
TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0IK TCGA-B6-A0IM 
       50.70        65.72       146.50       112.37        18.77       126.12 
TCGA-B6-A0IN TCGA-B6-A0IO TCGA-B6-A0IP TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RI 
       84.59       110.14       110.93        68.45       189.01       234.28 
TCGA-B6-A0RL TCGA-B6-A0RM TCGA-B6-A0RO TCGA-B6-A0RQ TCGA-B6-A0RS TCGA-B6-A0RT 
       81.17        78.02       162.05       140.48       100.70        89.46 
TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0WY 
      157.41        97.48       188.68        79.63        18.35       113.79 
TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 
      129.57       129.70       186.48        28.27        68.94        58.88 
TCGA-B6-A1KI TCGA-B6-A1KN TCGA-B6-A401 TCGA-B6-A40B TCGA-BH-A0AU TCGA-BH-A0AV 
       73.51       139.17        85.35       103.63        24.53        59.84 
TCGA-BH-A0AY TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B2 TCGA-BH-A0B4 TCGA-BH-A0B5 
       25.55        28.50        46.95        40.83        39.16        48.36 
TCGA-BH-A0B6 TCGA-BH-A0B7 TCGA-BH-A0B9 TCGA-BH-A0BC TCGA-BH-A0BF TCGA-BH-A0BG 
       56.94        56.98        51.68        32.02        25.71        24.85 
TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BP TCGA-BH-A0BQ 
       21.70        44.05        61.68        35.67        48.69        27.19 
TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0BW TCGA-BH-A0C0 
       53.69        53.95        45.57        49.94        11.67        41.75 
TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH 
       48.13        42.90        45.83        31.17        23.44        38.01 
TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DO TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DT 
       22.13        13.91        17.26         3.22         2.56        38.47 
TCGA-BH-A0DX TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EA 
       47.41        15.68        14.30        44.81        46.19        32.58 
TCGA-BH-A0EB TCGA-BH-A0EI TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 
       24.49        24.43        10.78        15.16        37.78        35.51 
TCGA-BH-A0H6 TCGA-BH-A0H7 TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HI 
       24.56        23.08        41.00        52.96        26.50        20.38 
TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HX 
        2.50        13.61        36.85        12.89        51.32        27.25 
TCGA-BH-A0HY TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 
       50.79         5.59        23.93        24.95        42.35        44.81 
TCGA-BH-A0WA TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18K 
       23.05         8.81         2.01         7.23        20.12        90.84 
TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18R TCGA-BH-A18T 
       72.56        37.74        30.28        55.63        37.55         7.36 
TCGA-BH-A18U TCGA-BH-A1EN TCGA-BH-A1EO TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EU 
       51.39        69.93        91.99       113.82        82.85        42.28 
TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1EX TCGA-BH-A1EY TCGA-BH-A1F5 TCGA-BH-A1F6 
       12.00        55.69        49.58        17.69        89.16        97.48 
TCGA-BH-A1F8 TCGA-BH-A1FB TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH 
       24.66       120.62        33.17        74.73       122.89        36.92 
TCGA-BH-A1FM TCGA-BH-A1FR TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A203 TCGA-BH-A204 
       45.63       144.59        28.14        26.14        38.60        83.31 
TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U 
       57.83       130.16        10.65        20.12        10.52       109.28 
TCGA-BH-A42V TCGA-BH-A5J0 TCGA-BH-A6R8 TCGA-BH-A6R9 TCGA-BH-A8FY TCGA-BH-A8FZ 
        8.94        23.51         9.63         5.26         9.70        18.87 
TCGA-BH-A8G0 TCGA-BH-AB28 TCGA-C8-A12L TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12O 
       21.76         9.44        11.93        11.77        11.77        12.66 
TCGA-C8-A12Q TCGA-C8-A12U TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A12Z TCGA-C8-A130 
       12.66        12.66        12.66        12.66         0.39         3.16 
TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A135 TCGA-C8-A137 TCGA-C8-A138 TCGA-C8-A1HE 
        1.87         1.12         1.05         4.11         4.08        12.33 
TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HL 
       10.92        11.34        11.28         0.16        12.03        10.42 
TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A26X TCGA-C8-A26Z 
        2.30         3.25         0.30         0.23         0.36         8.28 
TCGA-C8-A273 TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A3M7 TCGA-C8-A3M8 
        9.67         0.03         9.50        12.20         0.03         0.23 
TCGA-C8-A8HP TCGA-C8-A8HQ TCGA-C8-A9FZ TCGA-D8-A13Z TCGA-D8-A140 TCGA-D8-A141 
       13.02        12.49        19.46        20.88        13.25        20.58 
TCGA-D8-A145 TCGA-D8-A146 TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JC 
       13.48        21.14        14.17        17.49        16.50        15.78 
TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JH TCGA-D8-A1JI 
       18.15        18.90        12.03        12.03        14.01        18.97 
TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1JP TCGA-D8-A1JS 
       20.09        20.12        19.40        20.38        21.01        12.20 
TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X8 TCGA-D8-A1X9 
       13.32        14.70        18.58        17.79        25.74        23.90 
TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XD TCGA-D8-A1XF TCGA-D8-A1XL TCGA-D8-A1XM 
       18.15        12.39        17.16        15.22        19.92        17.69 
TCGA-D8-A1XO TCGA-D8-A1XS TCGA-D8-A1XU TCGA-D8-A1XV TCGA-D8-A1XY TCGA-D8-A1XZ 
       15.55        16.31        12.99        15.16        16.54        15.32 
TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 TCGA-D8-A1Y3 TCGA-D8-A27E TCGA-D8-A27F 
       15.52         9.93        14.24        14.14        17.42        16.04 
TCGA-D8-A27G TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27N 
       13.45        14.43         9.44        16.41        13.48         4.80 
TCGA-D8-A27P TCGA-D8-A27T TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 
        0.76        13.08        12.26        33.37        18.51        21.67 
TCGA-D8-A73U TCGA-D8-A73X TCGA-E2-A105 TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10A 
       16.18        12.10        43.00        27.52        46.59        40.41 
TCGA-E2-A10B TCGA-E2-A10C TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14O 
       37.51        40.11        28.44        28.87        47.15        44.68 
TCGA-E2-A14P TCGA-E2-A14Q TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V 
       40.96        38.24        33.17        33.30        43.33        34.26 
TCGA-E2-A14W TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A152 TCGA-E2-A153 TCGA-E2-A154 
       32.02        28.60        18.51        27.12        23.24        19.43 
TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A158 TCGA-E2-A15C TCGA-E2-A15E TCGA-E2-A15F 
       21.04        23.87        14.79        22.82        20.71        21.63 
TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15I TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M 
       18.21        12.92        17.42         9.04        20.58        11.05 
TCGA-E2-A15O TCGA-E2-A15P TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1B0 TCGA-E2-A1B1 
       13.02        19.56        14.07        14.99        53.62        53.03 
TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BC TCGA-E2-A1IE TCGA-E2-A1IF 
       33.01        32.35        28.50        16.47        38.30        37.41 
TCGA-E2-A1IG TCGA-E2-A1IH TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IO 
       32.78        33.73        28.44        22.65         3.88        20.98 
TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L8 TCGA-E2-A1L9 TCGA-E2-A1LA TCGA-E2-A1LB 
       11.08        54.18        39.62        19.66        24.59        40.47 
TCGA-E2-A1LG TCGA-E2-A1LK TCGA-E2-A1LL TCGA-E2-A2P5 TCGA-E2-A3DX TCGA-E2-A56Z 
       18.87         8.75        43.04        16.93        15.72         8.28 
TCGA-E2-A570 TCGA-E2-A573 TCGA-E2-A574 TCGA-E2-A576 TCGA-E2-A9RU TCGA-E9-A1N3 
       30.61        34.92        26.56        34.29        12.85        34.82 
TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N6 TCGA-E9-A1N9 TCGA-E9-A1NA TCGA-E9-A1NC 
       32.88        36.82        13.48        13.12        36.56        39.55 
TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 
       35.24        25.84         9.86        11.90        28.27        34.95 
TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RA TCGA-E9-A1RD 
        2.56         6.12         2.76        21.21        32.09         1.12 
TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RI TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A228 
       34.65         6.58        35.64        34.13        32.05        12.53 
TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A22H 
       13.32        39.09        41.03        12.89        23.51        20.71 
TCGA-E9-A243 TCGA-E9-A247 TCGA-E9-A248 TCGA-E9-A24A TCGA-E9-A295 TCGA-E9-A2JS 
       17.06        27.22         1.94        24.56         0.72        29.72 
TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A5FK 
        0.76        26.07        18.41        15.72        12.33        14.70 
TCGA-E9-A5FL TCGA-E9-A5UO TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ 
        0.79        13.81        12.20        39.72         8.48        18.21 
TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J6 TCGA-EW-A1OX TCGA-EW-A1OY 
       18.90        13.25        16.57        28.77        29.95        29.85 
TCGA-EW-A1P1 TCGA-EW-A1P3 TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A1P6 TCGA-EW-A1P7 
       39.78        52.96        29.82        23.11        18.48        30.08 
TCGA-EW-A1PA TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PF TCGA-EW-A1PG 
       18.90         6.15        13.94        10.52        14.43        34.55 
TCGA-EW-A1PH TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A2FW TCGA-EW-A3E8 
       19.96        55.00        52.73        25.91        22.09        34.03 
TCGA-EW-A3U0 TCGA-EW-A424 TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DF 
       17.49        23.51        59.57       216.76        79.10        70.85 
TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A2DO 
       85.15        86.96       115.69       106.06       101.62        85.35 
TCGA-GM-A3NW TCGA-GM-A3XG TCGA-GM-A3XL TCGA-GM-A3XN TCGA-GM-A5PV TCGA-GM-A5PX 
      110.50        43.73        69.30        66.38        13.55        18.12 
TCGA-LD-A66U TCGA-LD-A7W6 TCGA-LD-A9QF TCGA-LL-A440 TCGA-LL-A442 TCGA-LL-A50Y 
       21.24        13.28        10.62        24.95        10.95        25.05 
TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A5YP TCGA-LL-A6FQ TCGA-LL-A73Z TCGA-LL-A740 
       15.32        14.70        14.79         2.63         7.46        14.50 
TCGA-LL-A7T0 TCGA-LL-A8F5 TCGA-LL-A9Q3 TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 
       12.36        14.73        14.07        27.91        22.39         2.10 
TCGA-OL-A5D6 TCGA-OL-A5D7 TCGA-OL-A5DA TCGA-OL-A5RU TCGA-OL-A5RV TCGA-OL-A5RX 
       36.30        58.52        58.62        40.08        34.92        28.87 
TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J 
       24.72        22.32        20.38        26.70        23.47        65.62 
TCGA-OL-A66L TCGA-OL-A66N TCGA-OL-A66O TCGA-OL-A66P TCGA-OL-A6VQ TCGA-OL-A6VR 
       42.77        26.04        17.36        14.07        19.73        40.11 
TCGA-OL-A97C TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE TCGA-PL-A8LX TCGA-PL-A8LY 
        8.91        47.01        64.21        86.96         0.16         0.26 
TCGA-S3-A6ZG TCGA-S3-A6ZH TCGA-S3-AA0Z TCGA-S3-AA11 TCGA-S3-AA12 TCGA-S3-AA14 
       13.12        16.93        16.80        13.84        15.35        14.96 
TCGA-S3-AA15 TCGA-S3-AA17 TCGA-UL-AAZ6 TCGA-W8-A86G TCGA-WT-AB41 TCGA-XX-A899 
       13.84        13.94        17.03        11.41        52.96        15.35 
TCGA-XX-A89A TCGA-Z7-A8R5 TCGA-Z7-A8R6 
       16.04       108.07       107.05 

  AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE 
                         0.03                          0.03 
  AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE 
                       211.56                        234.28 
  AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE 
                        23.34                         24.59 
[1] "0.0 - 211.6 (23.3)" "0.0 - 234.3 (24.6)"
[1] "hr=" "1"  
D1V2, continuous
                               vv
clus                            STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  AMP PEAK  1(1P22.3) MUTATED        13       18        1        0        95
  AMP PEAK  1(1P22.3) WILD-TYPE      76       63        7        3       258
                               vv
clus                            STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  AMP PEAK  1(1P22.3) MUTATED          56         0         27         10
  AMP PEAK  1(1P22.3) WILD-TYPE       189         2        123         19
                               vv
clus                            STAGE IIIC STAGE IV STAGE TIS STAGE X
  AMP PEAK  1(1P22.3) MUTATED           14        6         0       3
  AMP PEAK  1(1P22.3) WILD-TYPE         49       14         1      10
D1V3, multiclass
            clus
vv           AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE
  STAGE I                             13                            76
  STAGE IA                            18                            63
  STAGE IB                             1                             7
  STAGE II                             0                             3
  STAGE IIA                           95                           258
  STAGE IIB                           56                           189
  STAGE III                            0                             2
  STAGE IIIA                          27                           123
  STAGE IIIB                          10                            19
  STAGE IIIC                          14                            49
  STAGE IV                             6                            14
  STAGE TIS                            0                             1
  STAGE X                              3                            10
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                             T1  T2  T3  T4
  AMP PEAK  1(1P22.3) MUTATED    43 153  35  11
  AMP PEAK  1(1P22.3) WILD-TYPE 229 463  95  29
D1V4, multiclass
    clus
vv   AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE
  T1                          43                           229
  T2                         153                           463
  T3                          35                            95
  T4                          11                            29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                             N0  N1  N2  N3
  AMP PEAK  1(1P22.3) MUTATED   135  67  19  19
  AMP PEAK  1(1P22.3) WILD-TYPE 366 283  98  56
D1V5, multiclass
    clus
vv   AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE
  N0                         135                           366
  N1                          67                           283
  N2                          19                            98
  N3                          19                            56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D1V6, binary
                               cls
clus                              0   1
  AMP PEAK  1(1P22.3) MUTATED   198   6
  AMP PEAK  1(1P22.3) WILD-TYPE 681  15
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  1(1P22.3) MUTATED    198    6
  AMP PEAK  1(1P22.3) WILD-TYPE  681   15
   clus
vv  AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE
  0                         198                           681
  1                           6                            15
[1] 2 2
[1] FALSE
D1V7, binary
                               cls
clus                              0   1
  AMP PEAK  1(1P22.3) MUTATED   242   2
  AMP PEAK  1(1P22.3) WILD-TYPE 809   9
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  1(1P22.3) MUTATED    242    2
  AMP PEAK  1(1P22.3) WILD-TYPE  809    9
        clus
vv       AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE
  FEMALE                         242                           809
  MALE                             2                             9
[1] 2 2
[1] FALSE
                               vv
clus                            INFILTRATING CARCINOMA NOS
  AMP PEAK  1(1P22.3) MUTATED                            0
  AMP PEAK  1(1P22.3) WILD-TYPE                          1
                               vv
clus                            INFILTRATING DUCTAL CARCINOMA
  AMP PEAK  1(1P22.3) MUTATED                             180
  AMP PEAK  1(1P22.3) WILD-TYPE                           583
                               vv
clus                            INFILTRATING LOBULAR CARCINOMA
  AMP PEAK  1(1P22.3) MUTATED                               36
  AMP PEAK  1(1P22.3) WILD-TYPE                            156
                               vv
clus                            MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  AMP PEAK  1(1P22.3) MUTATED                     3                     1
  AMP PEAK  1(1P22.3) WILD-TYPE                   3                     3
                               vv
clus                            MIXED HISTOLOGY (PLEASE SPECIFY)
  AMP PEAK  1(1P22.3) MUTATED                                  8
  AMP PEAK  1(1P22.3) WILD-TYPE                               22
                               vv
clus                            MUCINOUS CARCINOMA OTHER  SPECIFY
  AMP PEAK  1(1P22.3) MUTATED                    2             14
  AMP PEAK  1(1P22.3) WILD-TYPE                 15             34
D1V8, multiclass
                                  clus
vv                                 AMP PEAK  1(1P22.3) MUTATED
  INFILTRATING CARCINOMA NOS                                 0
  INFILTRATING DUCTAL CARCINOMA                            180
  INFILTRATING LOBULAR CARCINOMA                            36
  MEDULLARY CARCINOMA                                        3
  METAPLASTIC CARCINOMA                                      1
  MIXED HISTOLOGY (PLEASE SPECIFY)                           8
  MUCINOUS CARCINOMA                                         2
  OTHER  SPECIFY                                            14
                                  clus
vv                                 AMP PEAK  1(1P22.3) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                   1
  INFILTRATING DUCTAL CARCINOMA                              583
  INFILTRATING LOBULAR CARCINOMA                             156
  MEDULLARY CARCINOMA                                          3
  METAPLASTIC CARCINOMA                                        3
  MIXED HISTOLOGY (PLEASE SPECIFY)                            22
  MUCINOUS CARCINOMA                                          15
  OTHER  SPECIFY                                              34
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D1V9, binary
                               cls
clus                              0   1
  AMP PEAK  1(1P22.3) MUTATED    63 181
  AMP PEAK  1(1P22.3) WILD-TYPE 225 593
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  1(1P22.3) MUTATED     63  181
  AMP PEAK  1(1P22.3) WILD-TYPE  225  593
     clus
vv    AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE
  NO                           63                           225
  YES                         181                           593
[1] 2 2
[1] FALSE
D1V10, continuous
                               vv
clus                            AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK  1(1P22.3) MUTATED                                  0     9
  AMP PEAK  1(1P22.3) WILD-TYPE                                1    51
                               vv
clus                            BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK  1(1P22.3) MUTATED                          51   162
  AMP PEAK  1(1P22.3) WILD-TYPE                       119   574
D1V11, multiclass
                                  clus
vv                                 AMP PEAK  1(1P22.3) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                           0
  ASIAN                                                      9
  BLACK OR AFRICAN AMERICAN                                 51
  WHITE                                                    162
                                  clus
vv                                 AMP PEAK  1(1P22.3) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                             1
  ASIAN                                                       51
  BLACK OR AFRICAN AMERICAN                                  119
  WHITE                                                      574
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D1V12, binary
                               cls
clus                              0   1
  AMP PEAK  1(1P22.3) MUTATED     8 197
  AMP PEAK  1(1P22.3) WILD-TYPE  30 661
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  1(1P22.3) MUTATED      8  197
  AMP PEAK  1(1P22.3) WILD-TYPE   30  661
                        clus
vv                       AMP PEAK  1(1P22.3) MUTATED
  HISPANIC OR LATINO                               8
  NOT HISPANIC OR LATINO                         197
                        clus
vv                       AMP PEAK  1(1P22.3) WILD-TYPE
  HISPANIC OR LATINO                                30
  NOT HISPANIC OR LATINO                           661
[1] 2 2
[1] FALSE

Clustering(2) Variable = AMP PEAK  2(1Q21.3) MUTATION ANALYSIS
D2V1, survival
                               sevent
clus2                             0   1
  AMP PEAK  2(1Q21.3) MUTATED   671  89
  AMP PEAK  2(1Q21.3) WILD-TYPE 245  39
  AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE 
                          760                           284 
  AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE 
                           89                            39 
$`AMP PEAK  2(1Q21.3) MUTATED`
TCGA-3C-AAAU TCGA-3C-AALI TCGA-3C-AALK TCGA-5L-AAT0 TCGA-5L-AAT1 TCGA-5T-A9QA 
      129.14       131.67        40.14        48.56        48.36         9.96 
TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SI TCGA-A1-A0SJ TCGA-A1-A0SK 
       14.37        43.43        48.10        20.88        13.68        31.79 
TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SO TCGA-A1-A0SP TCGA-A1-A0SQ TCGA-A2-A04P 
        7.96        39.32        28.01        19.20        18.21        18.02 
TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04W TCGA-A2-A04X 
       78.41       121.94        73.84        87.25       101.98        55.43 
TCGA-A2-A04Y TCGA-A2-A0CK TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CQ TCGA-A2-A0CS 
       36.13       136.73        24.79       114.81        88.60        75.55 
TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CX TCGA-A2-A0D0 TCGA-A2-A0D2 
       75.25         5.19        98.99        56.81        67.33        33.76 
TCGA-A2-A0D3 TCGA-A2-A0D4 TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0ET 
       61.58        25.22       101.72       134.40        80.28        35.05 
TCGA-A2-A0EV TCGA-A2-A0EY TCGA-A2-A0ST TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0SX 
       31.82        63.29        99.19        27.12        44.88        50.43 
TCGA-A2-A0SY TCGA-A2-A0T0 TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T4 TCGA-A2-A0T5 
       44.28        17.52         8.38        49.84        20.52        17.46 
TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YE TCGA-A2-A0YF 
       18.90        20.75        32.55        25.28        18.21        50.47 
TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A0YK TCGA-A2-A0YL 
       21.90        21.67        49.48        18.61        19.33        48.46 
TCGA-A2-A0YM TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1FX TCGA-A2-A1FZ 
       31.73        23.77        23.47        17.36        60.72        22.45 
TCGA-A2-A1G0 TCGA-A2-A25B TCGA-A2-A25C TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD 
       20.25        42.44        17.19        10.59        20.88        39.65 
TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XU TCGA-A2-A3XX TCGA-A2-A3XY TCGA-A2-A3XZ 
       33.93        83.01        29.98        47.31        34.98        50.37 
TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4S2 TCGA-A7-A0CD TCGA-A7-A0CE TCGA-A7-A0CG 
       38.37         7.30        21.14        38.30        35.31        34.29 
TCGA-A7-A0CH TCGA-A7-A0CJ TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A13D TCGA-A7-A13E 
       35.47        30.61        35.67        33.11        31.73        20.19 
TCGA-A7-A13F TCGA-A7-A13G TCGA-A7-A13H TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26H 
       25.15        23.61        29.56        31.36        24.26        23.80 
TCGA-A7-A26I TCGA-A7-A26J TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3J1 TCGA-A7-A425 
       21.73        20.61        10.59        10.29        11.28        14.70 
TCGA-A7-A426 TCGA-A7-A4SB TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF TCGA-A7-A56D 
       11.97        13.74        14.50        21.17        17.92        14.73 
TCGA-A7-A5ZV TCGA-A7-A5ZW TCGA-A7-A5ZX TCGA-A7-A6VV TCGA-A7-A6VW TCGA-A7-A6VX 
       12.10        10.72        11.05        10.29         9.37        10.42 
TCGA-A7-A6VY TCGA-A8-A06O TCGA-A8-A06Q TCGA-A8-A06U TCGA-A8-A06X TCGA-A8-A06Y 
        8.75        13.02         1.02        29.03        31.00        26.01 
TCGA-A8-A06Z TCGA-A8-A076 TCGA-A8-A079 TCGA-A8-A07E TCGA-A8-A07F TCGA-A8-A07G 
        1.02        53.98         9.01        19.99        18.97        18.97 
TCGA-A8-A07I TCGA-A8-A07L TCGA-A8-A07O TCGA-A8-A07R TCGA-A8-A07S TCGA-A8-A07U 
       14.01        32.05         9.99         8.98         7.99        24.99 
TCGA-A8-A07W TCGA-A8-A07Z TCGA-A8-A084 TCGA-A8-A08A TCGA-A8-A08B TCGA-A8-A08C 
        9.99        45.07        15.06         0.99        38.01        28.96 
TCGA-A8-A08G TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08P TCGA-A8-A08R TCGA-A8-A08S 
       19.96        37.05         9.99        31.00         0.99        33.01 
TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A08Z TCGA-A8-A092 TCGA-A8-A093 TCGA-A8-A095 
      112.08        43.00        40.01        30.97        17.95        41.98 
TCGA-A8-A097 TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09C TCGA-A8-A09E 
       12.00         9.99         9.99        12.00         1.02        49.05 
TCGA-A8-A09I TCGA-A8-A09K TCGA-A8-A09Q TCGA-A8-A09R TCGA-A8-A09V TCGA-A8-A09W 
       45.07        29.98        25.02         8.98        15.02         0.99 
TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A9 TCGA-A8-A0AB 
       12.00        19.04        13.02        21.04        27.02        17.03 
TCGA-AC-A23E TCGA-AC-A23G TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM 
        2.37        10.85         5.72         1.48        38.53        99.35 
TCGA-AC-A2FG TCGA-AC-A2FM TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3HN 
       36.99        26.04         0.92         2.27        32.45        16.31 
TCGA-AC-A3OD TCGA-AC-A3TN TCGA-AC-A3W5 TCGA-AC-A3W6 TCGA-AC-A3YJ TCGA-AC-A5XS 
       14.83        14.99        16.57        19.79        24.79         1.55 
TCGA-AC-A62X TCGA-AC-A62Y TCGA-AC-A6IV TCGA-AC-A6IW TCGA-AC-A6IX TCGA-AC-A6NO 
       13.71        17.42        18.67        13.58        12.26         1.68 
TCGA-AC-A7VC TCGA-AC-A8OP TCGA-AC-A8OQ TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A041 
        0.03        20.19         1.12         0.33         0.33         0.23 
TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AK TCGA-AN-A0AL 
        2.96         1.78         1.71         9.96         7.36         6.51 
TCGA-AN-A0AM TCGA-AN-A0AS TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FL 
        0.16         0.33         5.65         7.96         7.00         7.59 
TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FX 
        7.17         6.28         7.04         0.33         0.36         0.33 
TCGA-AN-A0FY TCGA-AN-A0FZ TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XP 
        0.33         0.33         0.33         0.33        12.33         0.30 
TCGA-AN-A0XR TCGA-AN-A0XU TCGA-AN-A0XW TCGA-AO-A03L TCGA-AO-A03N TCGA-AO-A03O 
        0.33         0.33         5.59        80.28        66.77        81.63 
TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J4 TCGA-AO-A0J5 
       95.70        68.75        32.78        21.40        52.18        26.04 
TCGA-AO-A0J6 TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JB 
       37.48        20.32        22.36        53.03        21.53        50.70 
TCGA-AO-A0JD TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JG TCGA-AO-A0JJ TCGA-AO-A0JL 
       72.00        76.77        21.37        26.24        62.04        55.33 
TCGA-AO-A0JM TCGA-AO-A124 TCGA-AO-A125 TCGA-AO-A128 TCGA-AO-A129 TCGA-AO-A12A 
       71.80       102.58        99.25       106.78       108.03        90.58 
TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A1KP TCGA-AO-A1KQ 
       98.27        64.04        48.36        41.62        82.62        61.87 
TCGA-AO-A1KR TCGA-AO-A1KS TCGA-AO-A1KT TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A04L 
       70.39         0.53        17.79        24.79        26.93       130.09 
TCGA-AQ-A0Y5 TCGA-AQ-A1H3 TCGA-AQ-A54N TCGA-AQ-A54O TCGA-AQ-A7U7 TCGA-AR-A0TP 
        5.65        32.52         2.56        32.91        19.20       111.32 
TCGA-AR-A0TQ TCGA-AR-A0TR TCGA-AR-A0TS TCGA-AR-A0TT TCGA-AR-A0TW TCGA-AR-A0U0 
       73.64         5.26        74.79        86.66        98.93        65.36 
TCGA-AR-A0U1 TCGA-AR-A0U2 TCGA-AR-A0U4 TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AJ 
      101.95        83.87        85.97        75.55        61.84        52.77 
TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AN TCGA-AR-A1AP TCGA-AR-A1AQ TCGA-AR-A1AR 
       51.25        48.82        43.73        39.98        43.07        17.23 
TCGA-AR-A1AS TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24K 
       37.81        61.28        63.62        33.73       160.90        50.89 
TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24P TCGA-AR-A24R TCGA-AR-A24T 
       94.22        96.89        78.51         2.76        87.22        76.01 
TCGA-AR-A24U TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A252 
       53.36        50.96        83.77        79.00        89.00        73.18 
TCGA-AR-A254 TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LE TCGA-AR-A2LJ TCGA-AR-A2LK 
       72.76        58.92        93.83       143.21        62.86        54.21 
TCGA-AR-A2LL TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A2LR 
       66.15        52.11        38.17        39.39        40.54        20.38 
TCGA-AR-A5QM TCGA-AR-A5QN TCGA-AR-A5QP TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 
       54.74        16.04        20.45        77.62       143.38       149.59 
TCGA-B6-A0I9 TCGA-B6-A0IA TCGA-B6-A0IB TCGA-B6-A0IE TCGA-B6-A0IH TCGA-B6-A0IJ 
       12.13       220.90       129.57        65.72       112.37       176.98 
TCGA-B6-A0IN TCGA-B6-A0IO TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RG 
       84.59       110.14       110.93       140.88       211.56        68.45 
TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RL TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RP 
      189.01       234.28        81.17       172.96       162.05       102.77 
TCGA-B6-A0RS TCGA-B6-A0RT TCGA-B6-A0RU TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0WW 
      100.70        89.46       131.21       188.68        79.63        18.35 
TCGA-B6-A0WX TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X7 TCGA-B6-A1KC 
       21.47       129.70       186.48        28.27        58.88        43.59 
TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A401 TCGA-B6-A402 
      101.52        73.51       139.17       170.17        85.35        74.99 
TCGA-B6-A408 TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AU TCGA-BH-A0AV TCGA-BH-A0AW 
       68.12       103.63        71.15        24.53        59.84        20.45 
TCGA-BH-A0AY TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B2 TCGA-BH-A0B3 TCGA-BH-A0B5 
       25.55        28.50        46.95        40.83        39.55        48.36 
TCGA-BH-A0B6 TCGA-BH-A0B9 TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BF 
       56.94        51.68        37.22        32.02        18.21        25.71 
TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BM TCGA-BH-A0BP TCGA-BH-A0BQ 
       24.85        21.70        44.05        61.68        48.69        27.19 
TCGA-BH-A0BS TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0BW TCGA-BH-A0BZ TCGA-BH-A0C1 
       53.95        45.57        49.94        11.67        49.05        44.02 
TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DG TCGA-BH-A0DK TCGA-BH-A0DL 
       48.13        42.90        45.83        23.44        13.91        48.23 
TCGA-BH-A0DO TCGA-BH-A0DP TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX 
       17.26        15.65         2.56        38.47        67.86        47.41 
TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E6 TCGA-BH-A0E9 TCGA-BH-A0EA TCGA-BH-A0EB 
        4.41        15.68         9.63        46.19        32.58        24.49 
TCGA-BH-A0EE TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H7 
       31.00        30.35        10.78        15.16        37.78        23.08 
TCGA-BH-A0H9 TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ 
       41.00        20.38         5.85         2.50        13.61        36.85 
TCGA-BH-A0HU TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A18F 
       12.89        27.25        50.79         5.59        23.93         8.81 
TCGA-BH-A18G TCGA-BH-A18J TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18P TCGA-BH-A18Q 
        2.01        20.12        90.84        26.66        30.28        55.63 
TCGA-BH-A18R TCGA-BH-A18S TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1EN 
       37.55        66.05         7.36        51.39        51.16        69.93 
TCGA-BH-A1EO TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1EX TCGA-BH-A1F0 
       91.99        42.28        12.00        55.69        49.58        25.81 
TCGA-BH-A1F6 TCGA-BH-A1FC TCGA-BH-A1FD TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FM 
       97.48       114.15        33.17        63.35        55.00        45.63 
TCGA-BH-A1FN TCGA-BH-A1FU TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A203 TCGA-BH-A209 
       72.07        72.07        28.14        26.14        38.60       130.16 
TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-BH-A6R8 
        6.44        20.12        10.52        18.64        23.51         9.63 
TCGA-BH-A6R9 TCGA-BH-A8FY TCGA-BH-AB28 TCGA-C8-A12L TCGA-C8-A12M TCGA-C8-A12O 
        5.26         9.70         9.44        11.93        11.77        12.66 
TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12V TCGA-C8-A12W TCGA-C8-A12Z TCGA-C8-A130 
       11.77        12.66        12.66        12.66         0.39         3.16 
TCGA-C8-A131 TCGA-C8-A135 TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HG TCGA-C8-A1HI 
        2.24         1.05         4.08        12.33        11.34        11.28 
TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HL TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A26X 
        0.16        12.03        10.42         2.30         3.25         0.36 
TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A275 TCGA-C8-A27B 
        0.43         8.28         9.67         9.53         0.03         0.99 
TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-C8-A8HQ TCGA-C8-A8HR TCGA-D8-A13Z TCGA-D8-A140 
        0.03         0.23        12.49        13.41        20.88        13.25 
TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A146 TCGA-D8-A147 TCGA-D8-A1J8 
       20.58        13.97        14.17        21.14        19.20        14.17 
TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JD TCGA-D8-A1JE 
       17.49        16.50        18.71        15.78        18.15        18.90 
TCGA-D8-A1JF TCGA-D8-A1JI TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JM 
       12.03        18.97        20.09        20.12        20.09        19.40 
TCGA-D8-A1JN TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X7 
       20.38        12.20        13.32        14.70        18.58        16.73 
TCGA-D8-A1X8 TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XF TCGA-D8-A1XG 
       25.74        27.58        18.15        12.39        15.22        14.73 
TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XQ 
       21.83        14.50        19.92        17.69        15.55        16.41 
TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XU TCGA-D8-A1XV TCGA-D8-A1XW TCGA-D8-A1XY 
       15.85        16.31        12.99        15.16        12.66        16.54 
TCGA-D8-A1Y1 TCGA-D8-A1Y3 TCGA-D8-A27G TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27N 
        9.93        14.14        13.45        14.43         9.44         4.80 
TCGA-D8-A27P TCGA-D8-A27R TCGA-D8-A27T TCGA-D8-A27V TCGA-D8-A27W TCGA-D8-A3Z5 
        0.76        10.09        13.08        12.53        12.26        33.37 
TCGA-D8-A3Z6 TCGA-D8-A73U TCGA-D8-A73W TCGA-D8-A73X TCGA-E2-A107 TCGA-E2-A109 
       18.51        16.18         8.02        12.10        34.42        46.59 
TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10C TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N 
       40.41        37.51        40.11        28.44        28.87        47.15 
TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14Q TCGA-E2-A14R TCGA-E2-A14T TCGA-E2-A14X 
       44.68        40.96        38.24        38.60        33.30        31.96 
TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A153 TCGA-E2-A154 
       28.60        18.51        25.41        27.12        23.24        19.43 
TCGA-E2-A158 TCGA-E2-A159 TCGA-E2-A15A TCGA-E2-A15D TCGA-E2-A15G TCGA-E2-A15H 
       14.79        25.05        23.34        17.29        18.21        12.92 
TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15R TCGA-E2-A15T 
       19.40         9.04        20.58        11.05        17.06        14.99 
TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1BD TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1IH 
       60.53        53.62        17.10        37.41        32.78        33.73 
TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1L6 TCGA-E2-A1L7 
       33.70        28.44         3.88        22.19        54.18        27.42 
TCGA-E2-A1L8 TCGA-E2-A1L9 TCGA-E2-A1LA TCGA-E2-A1LG TCGA-E2-A1LH TCGA-E2-A1LI 
       39.62        19.66        24.59        18.87       106.75       102.61 
TCGA-E2-A1LK TCGA-E2-A2P5 TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 
        8.75        16.93         5.52        15.72         8.28        30.61 
TCGA-E2-A573 TCGA-E2-A574 TCGA-E2-A9RU TCGA-E9-A1N6 TCGA-E9-A1N8 TCGA-E9-A1N9 
       34.92        26.56        12.85        13.48        12.00        13.12 
TCGA-E9-A1NA TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R2 
       36.56        12.59        35.77         9.86        11.90        34.95 
TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R7 TCGA-E9-A1RA TCGA-E9-A1RB 
        2.56         6.12         3.02        21.21        32.09        32.09 
TCGA-E9-A1RC TCGA-E9-A1RD TCGA-E9-A1RF TCGA-E9-A1RG TCGA-E9-A1RH TCGA-E9-A227 
       40.24         1.12         6.58        21.27        34.59        32.05 
TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A22H 
       39.09        22.75        41.03        12.89        23.51        20.71 
TCGA-E9-A243 TCGA-E9-A244 TCGA-E9-A247 TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A295 
       17.06         0.69        27.22         7.13        24.56         0.72 
TCGA-E9-A2JS TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3QA TCGA-E9-A3X8 TCGA-E9-A54Y 
       29.72        26.07        18.41        30.18        15.72        23.84 
TCGA-E9-A5FK TCGA-E9-A5UP TCGA-E9-A6HE TCGA-EW-A1IW TCGA-EW-A1IY TCGA-EW-A1J2 
       14.70        14.40        15.39        12.20         8.48        13.25 
TCGA-EW-A1J3 TCGA-EW-A1J5 TCGA-EW-A1J6 TCGA-EW-A1OV TCGA-EW-A1OW TCGA-EW-A1OX 
       16.57        15.68        28.77        25.94        22.82        29.95 
TCGA-EW-A1OY TCGA-EW-A1P0 TCGA-EW-A1P3 TCGA-EW-A1P8 TCGA-EW-A1PB TCGA-EW-A1PC 
       29.85        41.13        52.96         7.86        19.99         6.15 
TCGA-EW-A1PE TCGA-EW-A1PH TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A2FW 
       10.52        19.96        55.00        52.73        25.91        22.09 
TCGA-EW-A3U0 TCGA-EW-A423 TCGA-EW-A424 TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2D9 
       17.49        10.16        23.51         7.40       109.87        59.57 
TCGA-GM-A2DC TCGA-GM-A2DD TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A2DN TCGA-GM-A3NW 
       83.34        75.02        70.85        72.10       101.62       110.50 
TCGA-GM-A3NY TCGA-GM-A3XL TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX 
       38.20        69.30        66.38        72.03        13.55        18.12 
TCGA-HN-A2NL TCGA-HN-A2OB TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LD-A66U TCGA-LD-A74U 
        2.60        62.43        11.84        11.57        21.24        13.22 
TCGA-LD-A7W5 TCGA-LD-A7W6 TCGA-LL-A441 TCGA-LL-A50Y TCGA-LL-A5YL TCGA-LL-A5YM 
        7.10        13.28        11.44        25.05        17.06        15.32 
TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LL-A5YP TCGA-LL-A6FP TCGA-LL-A6FQ TCGA-LL-A6FR 
       14.70        14.47        14.79        22.26         2.63        16.08 
TCGA-LL-A73Y TCGA-LL-A73Z TCGA-LL-A7SZ TCGA-LL-A8F5 TCGA-LL-A9Q3 TCGA-MS-A51U 
       15.68         7.46        14.70        14.73        14.07        22.39 
TCGA-OK-A5Q2 TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RU TCGA-OL-A5RV 
        2.10        58.52        31.99        58.62        40.08        34.92 
TCGA-OL-A5RW TCGA-OL-A5RX TCGA-OL-A5S0 TCGA-OL-A66I TCGA-OL-A66K TCGA-OL-A66L 
       36.36        28.87        20.38        23.47        41.92        42.77 
TCGA-OL-A66N TCGA-OL-A66O TCGA-OL-A6VO TCGA-OL-A6VQ TCGA-OL-A97C TCGA-PE-A5DE 
       26.04        17.36        28.21        19.73         8.91        86.96 
TCGA-PL-A8LZ TCGA-S3-A6ZF TCGA-S3-A6ZG TCGA-S3-A6ZH TCGA-S3-AA0Z TCGA-S3-AA10 
        9.93        16.50        13.12        16.93        16.80        15.39 
TCGA-S3-AA11 TCGA-S3-AA17 TCGA-UL-AAZ6 TCGA-UU-A93S TCGA-W8-A86G TCGA-WT-AB41 
       13.84        13.94        17.03         3.81        11.41        52.96 
TCGA-WT-AB44 TCGA-XX-A899 TCGA-Z7-A8R5 TCGA-Z7-A8R6 
       29.03        15.35       108.07       107.05 

$`AMP PEAK  2(1Q21.3) WILD-TYPE`
TCGA-3C-AALJ TCGA-4H-AAAK TCGA-A1-A0SB TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A2-A04N 
       42.81        11.44         8.52        14.27        47.24       104.81 
TCGA-A2-A04V TCGA-A2-A0CL TCGA-A2-A0CP TCGA-A2-A0CR TCGA-A2-A0CW TCGA-A2-A0D1 
       63.12        99.12        92.48       107.93       107.93        34.55 
TCGA-A2-A0EP TCGA-A2-A0EQ TCGA-A2-A0ER TCGA-A2-A0ES TCGA-A2-A0EU TCGA-A2-A0EW 
      107.61        79.76        74.40        72.00        34.29        61.94 
TCGA-A2-A0EX TCGA-A2-A0SU TCGA-A2-A0T1 TCGA-A2-A1G1 TCGA-A2-A1G4 TCGA-A2-A1G6 
       24.72        54.64        17.13        19.20        19.56        16.47 
TCGA-A2-A259 TCGA-A2-A25A TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A3XV TCGA-A2-A3XW 
       52.47       107.70        18.15       105.34        32.75        49.48 
TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S3 TCGA-A7-A0D9 
       24.39        21.30        23.21        26.96        21.90        37.45 
TCGA-A7-A0DC TCGA-A7-A26G TCGA-A7-A2KD TCGA-A7-A3IY TCGA-A7-A3RF TCGA-A7-A4SA 
       29.79        23.74        22.32        11.34        13.41        14.93 
TCGA-A8-A06P TCGA-A8-A06R TCGA-A8-A06T TCGA-A8-A075 TCGA-A8-A07B TCGA-A8-A07J 
       13.02        17.98        53.06        17.03        43.00        12.00 
TCGA-A8-A07P TCGA-A8-A082 TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08F TCGA-A8-A08I 
       10.98        18.05        36.95        13.02        33.01        12.00 
TCGA-A8-A08O TCGA-A8-A091 TCGA-A8-A09D TCGA-A8-A09M TCGA-A8-A09N TCGA-A8-A09T 
       31.00        33.01        50.04        33.07         1.02        19.04 
TCGA-A8-A09X TCGA-A8-A0A7 TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A2FB TCGA-AC-A2FF 
       14.01         0.99        38.04         0.95        40.57        55.43 
TCGA-AC-A2FK TCGA-AC-A2FO TCGA-AC-A2QH TCGA-AC-A3QP TCGA-AC-A3YI TCGA-AC-A62V 
       38.79        50.70        33.04        22.19        23.24        11.44 
TCGA-AC-A7VB TCGA-AC-A8OR TCGA-AC-A8OS TCGA-AN-A046 TCGA-AN-A049 TCGA-AN-A0AR 
        8.22         1.32         2.30         0.33         0.62         0.33 
TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XV TCGA-AO-A03M 
        0.33         6.44         0.33         0.33         5.33        61.35 
TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0JC TCGA-AO-A0JI TCGA-AO-A126 
       47.87        58.95        29.13        50.86        50.24       108.72 
TCGA-AO-A12E TCGA-AO-A12H TCGA-AO-A1KO TCGA-AQ-A1H2 TCGA-AR-A0TV TCGA-AR-A0TX 
       57.30        28.37        14.73        15.62        42.35        64.83 
TCGA-AR-A0TY TCGA-AR-A0TZ TCGA-AR-A0U3 TCGA-AR-A1AM TCGA-AR-A1AO TCGA-AR-A1AU 
       55.86       107.24       114.02        76.11        43.56        76.21 
TCGA-AR-A1AX TCGA-AR-A24O TCGA-AR-A24Q TCGA-AR-A24S TCGA-AR-A24V TCGA-AR-A251 
       62.14        84.20       104.28        97.84        85.35        78.48 
TCGA-AR-A2LH TCGA-AR-A5QQ TCGA-B6-A0IC TCGA-B6-A0IG TCGA-B6-A0IK TCGA-B6-A0IM 
       20.25        10.59        50.70       146.50        18.77       126.12 
TCGA-B6-A0RM TCGA-B6-A0RQ TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WY TCGA-B6-A0WZ 
       78.02       140.48       157.41        97.48       113.79       129.57 
TCGA-B6-A0X5 TCGA-BH-A0B4 TCGA-BH-A0B7 TCGA-BH-A0BO TCGA-BH-A0BR TCGA-BH-A0C0 
       68.94        39.16        56.98        35.67        53.69        41.75 
TCGA-BH-A0DE TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DQ TCGA-BH-A0DZ TCGA-BH-A0E2 
       31.17        38.01        22.13         3.22        16.27        14.30 
TCGA-BH-A0E7 TCGA-BH-A0EI TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0HA TCGA-BH-A0HB 
       44.81        24.43        35.51        24.56        52.96        26.50 
TCGA-BH-A0HW TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A0WA TCGA-BH-A18I 
       51.32        24.95        42.35        44.81        23.05         7.23 
TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EY TCGA-BH-A1F2 
       72.56        37.74       113.82        82.85        17.69        31.53 
TCGA-BH-A1F5 TCGA-BH-A1F8 TCGA-BH-A1FB TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH 
       89.16        24.66       120.62        74.73       122.89        36.92 
TCGA-BH-A1FR TCGA-BH-A204 TCGA-BH-A208 TCGA-BH-A28O TCGA-BH-A42U TCGA-BH-A42V 
      144.59        83.31        57.83        10.65       109.28         8.94 
TCGA-BH-A8FZ TCGA-BH-A8G0 TCGA-C8-A12N TCGA-C8-A12U TCGA-C8-A12X TCGA-C8-A132 
       18.87        21.76        11.77        12.66        12.66         1.87 
TCGA-C8-A134 TCGA-C8-A137 TCGA-C8-A1HF TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A278 
        1.12         4.11        10.92         0.30         0.23         9.50 
TCGA-C8-A27A TCGA-C8-A8HP TCGA-C8-A9FZ TCGA-D8-A13Y TCGA-D8-A145 TCGA-D8-A1JG 
       12.20        13.02        19.46        11.90        13.48        12.03 
TCGA-D8-A1JH TCGA-D8-A1JP TCGA-D8-A1X6 TCGA-D8-A1X9 TCGA-D8-A1XD TCGA-D8-A1XT 
       14.01        21.01        17.79        23.90        17.16         6.35 
TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A1Y2 TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27H 
       15.32        15.52        14.24        17.42        16.04        13.05 
TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A4Z1 TCGA-E2-A105 TCGA-E2-A108 TCGA-E2-A14S 
       16.41        13.48        21.67        43.00        27.52        33.17 
TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14W TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A15C 
       43.33        34.26        32.02        21.04        23.87        22.82 
TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15I TCGA-E2-A15O TCGA-E2-A15P TCGA-E2-A15S 
       20.71        21.63        17.42        13.02        19.56        14.07 
TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BC TCGA-E2-A1IE 
       53.03        33.01        32.35        28.50        16.47        38.30 
TCGA-E2-A1IK TCGA-E2-A1IO TCGA-E2-A1IU TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LL 
       22.65        20.98        11.08        40.47        28.90        43.04 
TCGA-E2-A576 TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1NC TCGA-E9-A1NF 
       34.29        34.82        32.88        36.82        39.55        35.24 
TCGA-E9-A1NG TCGA-E9-A1R0 TCGA-E9-A1R6 TCGA-E9-A1RE TCGA-E9-A1RI TCGA-E9-A226 
       25.84        28.27         2.76        34.65        35.64        34.13 
TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A248 TCGA-E9-A2JT TCGA-E9-A54X TCGA-E9-A5FL 
       12.53        13.32         1.94         0.76        12.33         0.79 
TCGA-E9-A5UO TCGA-EW-A1IX TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1OZ TCGA-EW-A1P1 
       13.81        39.72        18.21        18.90        40.41        39.78 
TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1PA TCGA-EW-A1PD 
       29.82        23.11        18.48        30.08        18.90        13.94 
TCGA-EW-A1PF TCGA-EW-A1PG TCGA-EW-A3E8 TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DI 
       14.43        34.55        34.03       216.76        79.10        85.15 
TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DO TCGA-GM-A3XG TCGA-LD-A9QF 
       86.96       115.69       106.06        85.35        43.73        10.62 
TCGA-LL-A440 TCGA-LL-A442 TCGA-LL-A740 TCGA-LL-A7T0 TCGA-LQ-A4E4 TCGA-OL-A5D6 
       24.95        10.95        14.50        12.36        27.91        36.30 
TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A66H TCGA-OL-A66J TCGA-OL-A66P TCGA-OL-A6VR 
       24.72        22.32        26.70        65.62        14.07        40.11 
TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PL-A8LX TCGA-PL-A8LY TCGA-S3-AA12 TCGA-S3-AA14 
       47.01        64.21         0.16         0.26        15.35        14.96 
TCGA-S3-AA15 TCGA-XX-A89A 
       13.84        16.04 

  AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE 
                         0.03                          0.16 
  AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE 
                       234.28                        216.76 
  AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE 
                        23.51                         27.24 
[1] "0.0 - 234.3 (23.5)" "0.2 - 216.8 (27.2)"
[1] "hr=" "1.1"
D2V2, continuous
                               vv
clus                            STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  AMP PEAK  2(1Q21.3) MUTATED        57       54        5        3       271
  AMP PEAK  2(1Q21.3) WILD-TYPE      32       27        3        0        82
                               vv
clus                            STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  AMP PEAK  2(1Q21.3) MUTATED         170         1        105         25
  AMP PEAK  2(1Q21.3) WILD-TYPE        75         1         45          4
                               vv
clus                            STAGE IIIC STAGE IV STAGE TIS STAGE X
  AMP PEAK  2(1Q21.3) MUTATED           49       16         1       9
  AMP PEAK  2(1Q21.3) WILD-TYPE         14        4         0       4
D2V3, multiclass
            clus
vv           AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  STAGE I                             57                            32
  STAGE IA                            54                            27
  STAGE IB                             5                             3
  STAGE II                             3                             0
  STAGE IIA                          271                            82
  STAGE IIB                          170                            75
  STAGE III                            1                             1
  STAGE IIIA                         105                            45
  STAGE IIIB                          25                             4
  STAGE IIIC                          49                            14
  STAGE IV                            16                             4
  STAGE TIS                            1                             0
  STAGE X                              9                             4
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                             T1  T2  T3  T4
  AMP PEAK  2(1Q21.3) MUTATED   180 456  97  35
  AMP PEAK  2(1Q21.3) WILD-TYPE  92 160  33   5
D2V4, multiclass
    clus
vv   AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  T1                         180                            92
  T2                         456                           160
  T3                          97                            33
  T4                          35                             5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                             N0  N1  N2  N3
  AMP PEAK  2(1Q21.3) MUTATED   369 249  81  59
  AMP PEAK  2(1Q21.3) WILD-TYPE 132 101  36  16
D2V5, multiclass
    clus
vv   AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  N0                         369                           132
  N1                         249                           101
  N2                          81                            36
  N3                          59                            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D2V6, binary
                               cls
clus                              0   1
  AMP PEAK  2(1Q21.3) MUTATED   637  16
  AMP PEAK  2(1Q21.3) WILD-TYPE 242   5
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  2(1Q21.3) MUTATED    637   16
  AMP PEAK  2(1Q21.3) WILD-TYPE  242    5
   clus
vv  AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  0                         637                           242
  1                          16                             5
[1] 2 2
[1] FALSE
D2V7, binary
                               cls
clus                              0   1
  AMP PEAK  2(1Q21.3) MUTATED   765   6
  AMP PEAK  2(1Q21.3) WILD-TYPE 286   5
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  2(1Q21.3) MUTATED    765    6
  AMP PEAK  2(1Q21.3) WILD-TYPE  286    5
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  FEMALE                         765                           286
  MALE                             6                             5
[1] 2 2
[1] FALSE
                               vv
clus                            INFILTRATING CARCINOMA NOS
  AMP PEAK  2(1Q21.3) MUTATED                            1
  AMP PEAK  2(1Q21.3) WILD-TYPE                          0
                               vv
clus                            INFILTRATING DUCTAL CARCINOMA
  AMP PEAK  2(1Q21.3) MUTATED                             552
  AMP PEAK  2(1Q21.3) WILD-TYPE                           211
                               vv
clus                            INFILTRATING LOBULAR CARCINOMA
  AMP PEAK  2(1Q21.3) MUTATED                              149
  AMP PEAK  2(1Q21.3) WILD-TYPE                             43
                               vv
clus                            MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  AMP PEAK  2(1Q21.3) MUTATED                     5                     2
  AMP PEAK  2(1Q21.3) WILD-TYPE                   1                     2
                               vv
clus                            MIXED HISTOLOGY (PLEASE SPECIFY)
  AMP PEAK  2(1Q21.3) MUTATED                                 19
  AMP PEAK  2(1Q21.3) WILD-TYPE                               11
                               vv
clus                            MUCINOUS CARCINOMA OTHER  SPECIFY
  AMP PEAK  2(1Q21.3) MUTATED                    9             34
  AMP PEAK  2(1Q21.3) WILD-TYPE                  8             14
D2V8, multiclass
                                  clus
vv                                 AMP PEAK  2(1Q21.3) MUTATED
  INFILTRATING CARCINOMA NOS                                 1
  INFILTRATING DUCTAL CARCINOMA                            552
  INFILTRATING LOBULAR CARCINOMA                           149
  MEDULLARY CARCINOMA                                        5
  METAPLASTIC CARCINOMA                                      2
  MIXED HISTOLOGY (PLEASE SPECIFY)                          19
  MUCINOUS CARCINOMA                                         9
  OTHER  SPECIFY                                            34
                                  clus
vv                                 AMP PEAK  2(1Q21.3) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                   0
  INFILTRATING DUCTAL CARCINOMA                              211
  INFILTRATING LOBULAR CARCINOMA                              43
  MEDULLARY CARCINOMA                                          1
  METAPLASTIC CARCINOMA                                        2
  MIXED HISTOLOGY (PLEASE SPECIFY)                            11
  MUCINOUS CARCINOMA                                           8
  OTHER  SPECIFY                                              14
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D2V9, binary
                               cls
clus                              0   1
  AMP PEAK  2(1Q21.3) MUTATED   214 557
  AMP PEAK  2(1Q21.3) WILD-TYPE  74 217
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  2(1Q21.3) MUTATED    214  557
  AMP PEAK  2(1Q21.3) WILD-TYPE   74  217
     clus
vv    AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  NO                          214                            74
  YES                         557                           217
[1] 2 2
[1] FALSE
D2V10, continuous
                               vv
clus                            AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK  2(1Q21.3) MUTATED                                  0    39
  AMP PEAK  2(1Q21.3) WILD-TYPE                                1    21
                               vv
clus                            BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK  2(1Q21.3) MUTATED                         127   538
  AMP PEAK  2(1Q21.3) WILD-TYPE                        43   198
D2V11, multiclass
                                  clus
vv                                 AMP PEAK  2(1Q21.3) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                           0
  ASIAN                                                     39
  BLACK OR AFRICAN AMERICAN                                127
  WHITE                                                    538
                                  clus
vv                                 AMP PEAK  2(1Q21.3) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                             1
  ASIAN                                                       21
  BLACK OR AFRICAN AMERICAN                                   43
  WHITE                                                      198
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D2V12, binary
                               cls
clus                              0   1
  AMP PEAK  2(1Q21.3) MUTATED    23 623
  AMP PEAK  2(1Q21.3) WILD-TYPE  15 235
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  2(1Q21.3) MUTATED     23  623
  AMP PEAK  2(1Q21.3) WILD-TYPE   15  235
                        clus
vv                       AMP PEAK  2(1Q21.3) MUTATED
  HISPANIC OR LATINO                              23
  NOT HISPANIC OR LATINO                         623
                        clus
vv                       AMP PEAK  2(1Q21.3) WILD-TYPE
  HISPANIC OR LATINO                                15
  NOT HISPANIC OR LATINO                           235
[1] 2 2
[1] FALSE

Clustering(3) Variable = AMP PEAK  3(1Q44) MUTATION ANALYSIS
D3V1, survival
                             sevent
clus2                           0   1
  AMP PEAK  3(1Q44) MUTATED   679  84
  AMP PEAK  3(1Q44) WILD-TYPE 237  44
  AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE 
                        763                         281 
  AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE 
                         84                          44 
$`AMP PEAK  3(1Q44) MUTATED`
TCGA-3C-AAAU TCGA-3C-AALI TCGA-3C-AALJ TCGA-3C-AALK TCGA-5L-AAT0 TCGA-5L-AAT1 
      129.14       131.67        42.81        40.14        48.56        48.36 
TCGA-5T-A9QA TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SH TCGA-A1-A0SI 
        9.96        14.37        43.43        48.10        47.24        20.88 
TCGA-A1-A0SJ TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SO TCGA-A1-A0SP TCGA-A1-A0SQ 
       13.68         7.96        39.32        28.01        19.20        18.21 
TCGA-A2-A04P TCGA-A2-A04Q TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04W TCGA-A2-A04X 
       18.02        78.41        73.84        87.25       101.98        55.43 
TCGA-A2-A04Y TCGA-A2-A0CK TCGA-A2-A0CO TCGA-A2-A0CQ TCGA-A2-A0CS TCGA-A2-A0CT 
       36.13       136.73       114.81        88.60        75.55        75.25 
TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0CX TCGA-A2-A0D0 TCGA-A2-A0D2 
        5.19        98.99       107.93        56.81        67.33        33.76 
TCGA-A2-A0D3 TCGA-A2-A0D4 TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EQ 
       61.58        25.22       101.72       134.40        80.28        79.76 
TCGA-A2-A0ET TCGA-A2-A0EV TCGA-A2-A0EY TCGA-A2-A0ST TCGA-A2-A0SV TCGA-A2-A0SW 
       35.05        31.82        63.29        99.19        27.12        44.88 
TCGA-A2-A0SX TCGA-A2-A0SY TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T3 TCGA-A2-A0T4 
       50.43        44.28        17.52        17.13        49.84        20.52 
TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YE 
       17.46        18.90        20.75        32.55        25.28        18.21 
TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A0YM 
       21.67        49.48        18.61        19.33        48.46        31.73 
TCGA-A2-A0YT TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G1 TCGA-A2-A25A TCGA-A2-A25B 
       23.77        22.45        20.25        19.20       107.70        42.44 
TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A3KC TCGA-A2-A3KD TCGA-A2-A3XS 
       17.19        18.15       105.34        20.88        39.65        33.93 
TCGA-A2-A3XT TCGA-A2-A3XU TCGA-A2-A3XX TCGA-A2-A3XZ TCGA-A2-A4RW TCGA-A2-A4RY 
       83.01        29.98        47.31        50.37         7.30        21.30 
TCGA-A2-A4S2 TCGA-A7-A0CD TCGA-A7-A0CE TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0CJ 
       21.14        38.30        35.31        34.29        35.47        30.61 
TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A13D TCGA-A7-A13E TCGA-A7-A13F TCGA-A7-A13G 
       35.67        33.11        31.73        20.19        25.15        23.61 
TCGA-A7-A13H TCGA-A7-A26E TCGA-A7-A26G TCGA-A7-A26H TCGA-A7-A26I TCGA-A7-A26J 
       29.56        31.36        23.74        23.80        21.73        20.61 
TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3J1 TCGA-A7-A425 TCGA-A7-A426 TCGA-A7-A4SA 
       10.59        10.29        11.28        14.70        11.97        14.93 
TCGA-A7-A4SB TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF TCGA-A7-A56D TCGA-A7-A5ZV 
       13.74        14.50        21.17        17.92        14.73        12.10 
TCGA-A7-A5ZW TCGA-A7-A5ZX TCGA-A7-A6VW TCGA-A7-A6VX TCGA-A7-A6VY TCGA-A8-A06O 
       10.72        11.05         9.37        10.42         8.75        13.02 
TCGA-A8-A06Q TCGA-A8-A06T TCGA-A8-A06U TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A075 
        1.02        53.06        29.03        26.01         1.02        17.03 
TCGA-A8-A079 TCGA-A8-A07E TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07O 
        9.01        19.99        18.97        18.97        14.01         9.99 
TCGA-A8-A07R TCGA-A8-A07S TCGA-A8-A07U TCGA-A8-A07W TCGA-A8-A07Z TCGA-A8-A084 
        8.98         7.99        24.99         9.99        45.07        15.06 
TCGA-A8-A085 TCGA-A8-A08A TCGA-A8-A08B TCGA-A8-A08C TCGA-A8-A08F TCGA-A8-A08G 
       36.95         0.99        38.01        28.96        33.01        19.96 
TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08P TCGA-A8-A08S TCGA-A8-A08T 
       12.00        37.05         9.99        31.00        33.01       112.08 
TCGA-A8-A08X TCGA-A8-A08Z TCGA-A8-A092 TCGA-A8-A093 TCGA-A8-A095 TCGA-A8-A097 
       43.00        40.01        30.97        17.95        41.98        12.00 
TCGA-A8-A099 TCGA-A8-A09B TCGA-A8-A09C TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K 
        9.99        12.00         1.02        49.05        45.07        29.98 
TCGA-A8-A09M TCGA-A8-A09Q TCGA-A8-A09R TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A0A1 
       33.07        25.02         8.98        15.02         0.99        12.00 
TCGA-A8-A0A2 TCGA-A8-A0A6 TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C 
       19.04        21.04        27.02        17.03        38.04         0.95 
TCGA-AC-A23E TCGA-AC-A23G TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM 
        2.37        10.85         5.72         1.48        38.53        99.35 
TCGA-AC-A2FB TCGA-AC-A2FG TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A2QI TCGA-AC-A2QJ 
       40.57        36.99        26.04        50.70         0.92         2.27 
TCGA-AC-A3BB TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3TN TCGA-AC-A3W5 TCGA-AC-A3W6 
       32.45        16.31        14.83        14.99        16.57        19.79 
TCGA-AC-A3YJ TCGA-AC-A5XS TCGA-AC-A62V TCGA-AC-A62X TCGA-AC-A62Y TCGA-AC-A6IV 
       24.79         1.55        11.44        13.71        17.42        18.67 
TCGA-AC-A6IW TCGA-AC-A6IX TCGA-AC-A6NO TCGA-AC-A7VB TCGA-AC-A7VC TCGA-AC-A8OP 
       13.58        12.26         1.68         8.22         0.03        20.19 
TCGA-AC-A8OQ TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A041 TCGA-AN-A046 TCGA-AN-A04A 
        1.12         0.33         0.33         0.23         0.33         2.96 
TCGA-AN-A04C TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AK TCGA-AN-A0AL TCGA-AN-A0AM 
        1.78         1.71         9.96         7.36         6.51         0.16 
TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FK TCGA-AN-A0FL 
        0.33         0.33         6.44         5.65         7.00         7.59 
TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FX 
        7.17         6.28         7.04         0.33         0.36         0.33 
TCGA-AN-A0FY TCGA-AN-A0FZ TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XP 
        0.33         0.33         0.33         0.33        12.33         0.30 
TCGA-AN-A0XR TCGA-AN-A0XW TCGA-AO-A03L TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03P 
        0.33         5.59        80.28        66.77        81.63        95.70 
TCGA-AO-A03R TCGA-AO-A0J2 TCGA-AO-A0J4 TCGA-AO-A0J5 TCGA-AO-A0J7 TCGA-AO-A0J8 
       68.75        32.78        52.18        26.04        20.32        22.36 
TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JD TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JG 
       53.03        21.53        72.00        76.77        21.37        26.24 
TCGA-AO-A0JJ TCGA-AO-A0JL TCGA-AO-A0JM TCGA-AO-A124 TCGA-AO-A125 TCGA-AO-A128 
       62.04        55.33        71.80       102.58        99.25       106.78 
TCGA-AO-A129 TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A12E TCGA-AO-A12F 
      108.03        90.58        98.27        64.04        57.30        48.36 
TCGA-AO-A12G TCGA-AO-A1KP TCGA-AO-A1KQ TCGA-AO-A1KR TCGA-AO-A1KS TCGA-AO-A1KT 
       41.62        82.62        61.87        70.39         0.53        17.79 
TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A0Y5 TCGA-AQ-A1H3 TCGA-AQ-A54N 
       24.79        26.93       130.09         5.65        32.52         2.56 
TCGA-AQ-A54O TCGA-AQ-A7U7 TCGA-AR-A0TP TCGA-AR-A0TR TCGA-AR-A0TS TCGA-AR-A0U0 
       32.91        19.20       111.32         5.26        74.79        65.36 
TCGA-AR-A0U1 TCGA-AR-A0U2 TCGA-AR-A0U3 TCGA-AR-A0U4 TCGA-AR-A1AH TCGA-AR-A1AI 
      101.95        83.87       114.02        85.97        75.55        61.84 
TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AM TCGA-AR-A1AN TCGA-AR-A1AP 
       52.77        51.25        48.82        76.11        43.73        39.98 
TCGA-AR-A1AS TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A1AY TCGA-AR-A24K TCGA-AR-A24L 
       37.81        61.28        63.62        33.73        50.89        94.22 
TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24P TCGA-AR-A24Q TCGA-AR-A24R TCGA-AR-A24T 
       96.89        78.51         2.76       104.28        87.22        76.01 
TCGA-AR-A24U TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A251 
       53.36        50.96        83.77        79.00        89.00        78.48 
TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LE TCGA-AR-A2LJ 
       73.18        72.76        58.92        93.83       143.21        62.86 
TCGA-AR-A2LK TCGA-AR-A2LL TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ 
       54.21        66.15        52.11        38.17        39.39        40.54 
TCGA-AR-A2LR TCGA-AR-A5QM TCGA-AR-A5QN TCGA-AR-A5QP TCGA-B6-A0I1 TCGA-B6-A0I2 
       20.38        54.74        16.04        20.45        77.62       143.38 
TCGA-B6-A0I5 TCGA-B6-A0I9 TCGA-B6-A0IA TCGA-B6-A0IB TCGA-B6-A0IE TCGA-B6-A0IH 
      149.59        12.13       220.90       129.57        65.72       112.37 
TCGA-B6-A0IJ TCGA-B6-A0IN TCGA-B6-A0IO TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RE 
      176.98        84.59       110.14       110.93       140.88       211.56 
TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RL TCGA-B6-A0RN TCGA-B6-A0RO 
       68.45       189.01       234.28        81.17       172.96       162.05 
TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RS TCGA-B6-A0RT TCGA-B6-A0RU TCGA-B6-A0WT 
      102.77       140.48       100.70        89.46       131.21       188.68 
TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 
       79.63        18.35        21.47       129.57       129.70       186.48 
TCGA-B6-A0X7 TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A2IU TCGA-B6-A401 
       58.88        43.59       101.52        73.51       170.17        85.35 
TCGA-B6-A402 TCGA-B6-A408 TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AU TCGA-BH-A0AV 
       74.99        68.12       103.63        71.15        24.53        59.84 
TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B2 TCGA-BH-A0B3 
       20.45        25.55        28.50        46.95        40.83        39.55 
TCGA-BH-A0B5 TCGA-BH-A0B6 TCGA-BH-A0B7 TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BD 
       48.36        56.94        56.98        37.22        32.02        18.21 
TCGA-BH-A0BF TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BM TCGA-BH-A0BO 
       25.71        24.85        21.70        44.05        61.68        35.67 
TCGA-BH-A0BP TCGA-BH-A0BQ TCGA-BH-A0BS TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0BW 
       48.69        27.19        53.95        45.57        49.94        11.67 
TCGA-BH-A0BZ TCGA-BH-A0C1 TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DG 
       49.05        44.02        48.13        42.90        45.83        23.44 
TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DO TCGA-BH-A0DP TCGA-BH-A0DQ 
       22.13        13.91        48.23        17.26        15.65         3.22 
TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0E1 TCGA-BH-A0E6 
        2.56        38.47        67.86        47.41        15.68         9.63 
TCGA-BH-A0E9 TCGA-BH-A0EA TCGA-BH-A0EB TCGA-BH-A0EE TCGA-BH-A0GY TCGA-BH-A0GZ 
       46.19        32.58        24.49        31.00        30.35        10.78 
TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H7 TCGA-BH-A0H9 TCGA-BH-A0HI TCGA-BH-A0HK 
       15.16        37.78        23.08        41.00        20.38         5.85 
TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HX TCGA-BH-A0HY 
        2.50        13.61        36.85        12.89        27.25        50.79 
TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18K TCGA-BH-A18L 
        5.59        23.93         8.81         2.01        90.84        26.66 
TCGA-BH-A18M TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18R TCGA-BH-A18S TCGA-BH-A18T 
       72.56        30.28        55.63        37.55        66.05         7.36 
TCGA-BH-A18U TCGA-BH-A1EN TCGA-BH-A1EO TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EW 
       51.39        69.93        91.99        42.28        12.00        55.69 
TCGA-BH-A1EX TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F2 TCGA-BH-A1F6 TCGA-BH-A1FC 
       49.58        17.69        25.81        31.53        97.48       114.15 
TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FM TCGA-BH-A1FN TCGA-BH-A1FU TCGA-BH-A201 
       63.35        55.00        45.63        72.07        72.07        28.14 
TCGA-BH-A202 TCGA-BH-A203 TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 
       26.14        38.60       130.16        10.65         6.44        20.12 
TCGA-BH-A42T TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-BH-A6R8 TCGA-BH-A6R9 TCGA-BH-A8FY 
       10.52        18.64        23.51         9.63         5.26         9.70 
TCGA-BH-A8G0 TCGA-BH-AB28 TCGA-C8-A12L TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12U 
       21.76         9.44        11.93        12.66        11.77        12.66 
TCGA-C8-A12V TCGA-C8-A12W TCGA-C8-A12Z TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A135 
       12.66        12.66         0.39         3.16         2.24         1.05 
TCGA-C8-A138 TCGA-C8-A1HI TCGA-C8-A1HK TCGA-C8-A1HL TCGA-C8-A1HM TCGA-C8-A1HN 
        4.08        11.28        12.03        10.42         2.30         3.25 
TCGA-C8-A26V TCGA-C8-A26X TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A27B 
        0.30         0.36         8.28         9.67         9.53         0.99 
TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-C8-A8HP TCGA-C8-A8HQ TCGA-C8-A8HR TCGA-D8-A13Z 
        0.03         0.23        13.02        12.49        13.41        20.88 
TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A146 TCGA-D8-A147 
       13.25        20.58        13.97        14.17        21.14        19.20 
TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JD 
       14.17        17.49        16.50        18.71        15.78        18.15 
TCGA-D8-A1JE TCGA-D8-A1JF TCGA-D8-A1JI TCGA-D8-A1JJ TCGA-D8-A1JM TCGA-D8-A1JN 
       18.90        12.03        18.97        20.09        19.40        20.38 
TCGA-D8-A1JP TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X7 
       21.01        12.20        13.32        14.70        18.58        16.73 
TCGA-D8-A1X8 TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XF TCGA-D8-A1XG 
       25.74        27.58        18.15        12.39        15.22        14.73 
TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XR 
       21.83        14.50        19.92        17.69        15.55        15.85 
TCGA-D8-A1XS TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1XV TCGA-D8-A1XW TCGA-D8-A1XY 
       16.31         6.35        12.99        15.16        12.66        16.54 
TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y3 TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27I 
       15.52         9.93        14.14        13.45        13.05        14.43 
TCGA-D8-A27K TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27R TCGA-D8-A27T TCGA-D8-A27V 
        9.44         4.80         0.76        10.09        13.08        12.53 
TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A73U TCGA-D8-A73W TCGA-D8-A73X 
       12.26        33.37        18.51        16.18         8.02        12.10 
TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10B TCGA-E2-A10C TCGA-E2-A10E 
       34.42        27.52        46.59        37.51        40.11        28.44 
TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14Q TCGA-E2-A14R 
       28.87        47.15        44.68        40.96        38.24        38.60 
TCGA-E2-A14T TCGA-E2-A14V TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A150 
       33.30        34.26        31.96        28.60        18.51        25.41 
TCGA-E2-A152 TCGA-E2-A153 TCGA-E2-A154 TCGA-E2-A158 TCGA-E2-A159 TCGA-E2-A15A 
       27.12        23.24        19.43        14.79        25.05        23.34 
TCGA-E2-A15D TCGA-E2-A15E TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15J TCGA-E2-A15K 
       17.29        20.71        18.21        12.92        19.40         9.04 
TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B5 TCGA-E2-A1BD 
       20.58        11.05        60.53        53.62        32.35        17.10 
TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1IH TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IL 
       37.41        32.78        33.73        33.70        28.44         3.88 
TCGA-E2-A1IN TCGA-E2-A1L6 TCGA-E2-A1L8 TCGA-E2-A1L9 TCGA-E2-A1LG TCGA-E2-A1LH 
       22.19        54.18        39.62        19.66        18.87       106.75 
TCGA-E2-A1LI TCGA-E2-A2P5 TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 
      102.61        16.93         5.52        15.72         8.28        30.61 
TCGA-E2-A573 TCGA-E2-A574 TCGA-E2-A9RU TCGA-E9-A1N6 TCGA-E9-A1N8 TCGA-E9-A1N9 
       34.92        26.56        12.85        13.48        12.00        13.12 
TCGA-E9-A1NA TCGA-E9-A1NC TCGA-E9-A1NE TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R2 
       36.56        39.55        35.77         9.86        11.90        34.95 
TCGA-E9-A1R3 TCGA-E9-A1R5 TCGA-E9-A1R7 TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RC 
        2.56         3.02        21.21        32.09        32.09        40.24 
TCGA-E9-A1RD TCGA-E9-A1RF TCGA-E9-A1RG TCGA-E9-A1RH TCGA-E9-A226 TCGA-E9-A227 
        1.12         6.58        21.27        34.59        34.13        32.05 
TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A22G 
       13.32        39.09        22.75        41.03        12.89        23.51 
TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A244 TCGA-E9-A247 TCGA-E9-A248 TCGA-E9-A249 
       20.71        17.06         0.69        27.22         1.94         7.13 
TCGA-E9-A24A TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A3HO TCGA-E9-A3QA TCGA-E9-A3X8 
       24.56         0.72        29.72        26.07        30.18        15.72 
TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5UP TCGA-E9-A6HE TCGA-EW-A1IW TCGA-EW-A1IY 
       23.84        14.70        14.40        15.39        12.20         8.48 
TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J5 TCGA-EW-A1OV TCGA-EW-A1OW TCGA-EW-A1OX 
       13.25        16.57        15.68        25.94        22.82        29.95 
TCGA-EW-A1OY TCGA-EW-A1OZ TCGA-EW-A1P0 TCGA-EW-A1P3 TCGA-EW-A1P5 TCGA-EW-A1P8 
       29.85        40.41        41.13        52.96        23.11         7.86 
TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A1PE TCGA-EW-A1PH TCGA-EW-A2FR TCGA-EW-A2FS 
       19.99         6.15        10.52        19.96        55.00        52.73 
TCGA-EW-A2FV TCGA-EW-A2FW TCGA-EW-A423 TCGA-EW-A424 TCGA-GI-A2C8 TCGA-GI-A2C9 
       25.91        22.09        10.16        23.51         7.40       109.87 
TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DC TCGA-GM-A2DD TCGA-GM-A2DF TCGA-GM-A2DH 
       59.57       216.76        83.34        75.02        70.85        72.10 
TCGA-GM-A2DN TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XL TCGA-GM-A3XN TCGA-GM-A4E0 
      101.62       110.50        38.20        69.30        66.38        72.03 
TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2NL TCGA-HN-A2OB TCGA-JL-A3YW TCGA-JL-A3YX 
       13.55        18.12         2.60        62.43        11.84        11.57 
TCGA-LD-A66U TCGA-LD-A74U TCGA-LD-A7W5 TCGA-LD-A7W6 TCGA-LL-A441 TCGA-LL-A50Y 
       21.24        13.22         7.10        13.28        11.44        25.05 
TCGA-LL-A5YL TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LL-A5YP TCGA-LL-A6FP 
       17.06        15.32        14.70        14.47        14.79        22.26 
TCGA-LL-A6FQ TCGA-LL-A6FR TCGA-LL-A73Y TCGA-LL-A73Z TCGA-LL-A7SZ TCGA-LL-A9Q3 
        2.63        16.08        15.68         7.46        14.70        14.07 
TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D7 TCGA-OL-A5DA TCGA-OL-A5RU 
       27.91        22.39         2.10        58.52        58.62        40.08 
TCGA-OL-A5RV TCGA-OL-A5RW TCGA-OL-A5RX TCGA-OL-A5S0 TCGA-OL-A66I TCGA-OL-A66K 
       34.92        36.36        28.87        20.38        23.47        41.92 
TCGA-OL-A66L TCGA-OL-A66N TCGA-OL-A66O TCGA-OL-A6VO TCGA-OL-A6VQ TCGA-OL-A97C 
       42.77        26.04        17.36        28.21        19.73         8.91 
TCGA-PE-A5DD TCGA-PE-A5DE TCGA-PL-A8LZ TCGA-S3-A6ZF TCGA-S3-A6ZG TCGA-S3-A6ZH 
       64.21        86.96         9.93        16.50        13.12        16.93 
TCGA-S3-AA0Z TCGA-S3-AA10 TCGA-S3-AA11 TCGA-S3-AA12 TCGA-S3-AA17 TCGA-UL-AAZ6 
       16.80        15.39        13.84        15.35        13.94        17.03 
TCGA-UU-A93S TCGA-W8-A86G TCGA-WT-AB41 TCGA-WT-AB44 TCGA-XX-A899 TCGA-Z7-A8R5 
        3.81        11.41        52.96        29.03        15.35       108.07 
TCGA-Z7-A8R6 
      107.05 

$`AMP PEAK  3(1Q44) WILD-TYPE`
TCGA-4H-AAAK TCGA-A1-A0SB TCGA-A1-A0SG TCGA-A1-A0SK TCGA-A2-A04N TCGA-A2-A04R 
       11.44         8.52        14.27        31.79       104.81       121.94 
TCGA-A2-A04V TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CP TCGA-A2-A0CR TCGA-A2-A0D1 
       63.12        99.12        24.79        92.48       107.93        34.55 
TCGA-A2-A0EP TCGA-A2-A0ER TCGA-A2-A0ES TCGA-A2-A0EU TCGA-A2-A0EW TCGA-A2-A0EX 
      107.61        74.40        72.00        34.29        61.94        24.72 
TCGA-A2-A0SU TCGA-A2-A0T2 TCGA-A2-A0YF TCGA-A2-A0YG TCGA-A2-A1FV TCGA-A2-A1FW 
       54.64         8.38        50.47        21.90        23.47        17.36 
TCGA-A2-A1FX TCGA-A2-A1G4 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25F TCGA-A2-A3XV 
       60.72        19.56        16.47        52.47        10.59        32.75 
TCGA-A2-A3XW TCGA-A2-A3XY TCGA-A2-A3Y0 TCGA-A2-A4RX TCGA-A2-A4S0 TCGA-A2-A4S1 
       49.48        34.98        38.37        24.39        23.21        26.96 
TCGA-A2-A4S3 TCGA-A7-A0D9 TCGA-A7-A0DC TCGA-A7-A26F TCGA-A7-A2KD TCGA-A7-A3IY 
       21.90        37.45        29.79        24.26        22.32        11.34 
TCGA-A7-A3RF TCGA-A7-A6VV TCGA-A8-A06P TCGA-A8-A06R TCGA-A8-A06X TCGA-A8-A076 
       13.41        10.29        13.02        17.98        31.00        53.98 
TCGA-A8-A07B TCGA-A8-A07J TCGA-A8-A07L TCGA-A8-A07P TCGA-A8-A082 TCGA-A8-A086 
       43.00        12.00        32.05        10.98        18.05        13.02 
TCGA-A8-A08O TCGA-A8-A08R TCGA-A8-A091 TCGA-A8-A09A TCGA-A8-A09D TCGA-A8-A09N 
       31.00         0.99        33.01         9.99        50.04         1.02 
TCGA-A8-A09T TCGA-A8-A09X TCGA-A8-A0A4 TCGA-A8-A0A7 TCGA-AC-A2FF TCGA-AC-A2FK 
       19.04        14.01        13.02         0.99        55.43        38.79 
TCGA-AC-A2QH TCGA-AC-A3QP TCGA-AC-A3YI TCGA-AC-A8OR TCGA-AC-A8OS TCGA-AN-A049 
       33.04        22.19        23.24         1.32         2.30         0.62 
TCGA-AN-A0AR TCGA-AN-A0FJ TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AN-A0XV 
        0.33         7.96         0.33         0.33         0.33         5.33 
TCGA-AO-A03M TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J3 TCGA-AO-A0J6 
       61.35        47.87        58.95        29.13        21.40        37.48 
TCGA-AO-A0JB TCGA-AO-A0JC TCGA-AO-A0JI TCGA-AO-A126 TCGA-AO-A12H TCGA-AO-A1KO 
       50.70        50.86        50.24       108.72        28.37        14.73 
TCGA-AQ-A1H2 TCGA-AR-A0TQ TCGA-AR-A0TT TCGA-AR-A0TV TCGA-AR-A0TW TCGA-AR-A0TX 
       15.62        73.64        86.66        42.35        98.93        64.83 
TCGA-AR-A0TY TCGA-AR-A0TZ TCGA-AR-A1AO TCGA-AR-A1AQ TCGA-AR-A1AR TCGA-AR-A1AU 
       55.86       107.24        43.56        43.07        17.23        76.21 
TCGA-AR-A1AX TCGA-AR-A24H TCGA-AR-A24O TCGA-AR-A24S TCGA-AR-A24V TCGA-AR-A2LH 
       62.14       160.90        84.20        97.84        85.35        20.25 
TCGA-AR-A5QQ TCGA-B6-A0IC TCGA-B6-A0IG TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0RM 
       10.59        50.70       146.50        18.77       126.12        78.02 
TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WY TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A1KN 
      157.41        97.48       113.79        28.27        68.94       139.17 
TCGA-BH-A0B4 TCGA-BH-A0B9 TCGA-BH-A0BR TCGA-BH-A0C0 TCGA-BH-A0DE TCGA-BH-A0DH 
       39.16        51.68        53.69        41.75        31.17        38.01 
TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E2 TCGA-BH-A0E7 TCGA-BH-A0EI TCGA-BH-A0H5 
       16.27         4.41        14.30        44.81        24.43        35.51 
TCGA-BH-A0H6 TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HW TCGA-BH-A0W4 TCGA-BH-A0W5 
       24.56        52.96        26.50        51.32        24.95        42.35 
TCGA-BH-A0W7 TCGA-BH-A0WA TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18N TCGA-BH-A18V 
       44.81        23.05         7.23        20.12        37.74        51.16 
TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1F5 TCGA-BH-A1F8 TCGA-BH-A1FB TCGA-BH-A1FD 
      113.82        82.85        89.16        24.66       120.62        33.17 
TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FR TCGA-BH-A204 TCGA-BH-A208 
       74.73       122.89        36.92       144.59        83.31        57.83 
TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A8FZ TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12Q 
      109.28         8.94        18.87        11.77        11.77        12.66 
TCGA-C8-A12X TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A137 TCGA-C8-A1HE TCGA-C8-A1HF 
       12.66         1.87         1.12         4.11        12.33        10.92 
TCGA-C8-A1HG TCGA-C8-A1HJ TCGA-C8-A26W TCGA-C8-A26Y TCGA-C8-A275 TCGA-C8-A278 
       11.34         0.16         0.23         0.43         0.03         9.50 
TCGA-C8-A27A TCGA-C8-A9FZ TCGA-D8-A13Y TCGA-D8-A145 TCGA-D8-A1JG TCGA-D8-A1JH 
       12.20        19.46        11.90        13.48        12.03        14.01 
TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1X6 TCGA-D8-A1X9 TCGA-D8-A1XD TCGA-D8-A1XQ 
       20.12        20.09        17.79        23.90        17.16        16.41 
TCGA-D8-A1XZ TCGA-D8-A1Y2 TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27L TCGA-D8-A27M 
       15.32        14.24        17.42        16.04        16.41        13.48 
TCGA-D8-A4Z1 TCGA-E2-A105 TCGA-E2-A10A TCGA-E2-A14S TCGA-E2-A14U TCGA-E2-A14W 
       21.67        43.00        40.41        33.17        43.33        32.02 
TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A15C TCGA-E2-A15F TCGA-E2-A15I TCGA-E2-A15O 
       21.04        23.87        22.82        21.63        17.42        13.02 
TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1B1 TCGA-E2-A1B4 
       19.56        17.06        14.07        14.99        53.03        33.01 
TCGA-E2-A1B6 TCGA-E2-A1BC TCGA-E2-A1IE TCGA-E2-A1IK TCGA-E2-A1IO TCGA-E2-A1IU 
       28.50        16.47        38.30        22.65        20.98        11.08 
TCGA-E2-A1L7 TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LK TCGA-E2-A1LL 
       27.42        24.59        40.47        28.90         8.75        43.04 
TCGA-E2-A576 TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1ND TCGA-E9-A1NF 
       34.29        34.82        32.88        36.82        12.59        35.24 
TCGA-E9-A1NG TCGA-E9-A1R0 TCGA-E9-A1R4 TCGA-E9-A1R6 TCGA-E9-A1RE TCGA-E9-A1RI 
       25.84        28.27         6.12         2.76        34.65        35.64 
TCGA-E9-A228 TCGA-E9-A2JT TCGA-E9-A3Q9 TCGA-E9-A54X TCGA-E9-A5FL TCGA-E9-A5UO 
       12.53         0.76        18.41        12.33         0.79        13.81 
TCGA-EW-A1IX TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J6 TCGA-EW-A1P1 TCGA-EW-A1P4 
       39.72        18.21        18.90        28.77        39.78        29.82 
TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1PA TCGA-EW-A1PD TCGA-EW-A1PF TCGA-EW-A1PG 
       18.48        30.08        18.90        13.94        14.43        34.55 
TCGA-EW-A3E8 TCGA-EW-A3U0 TCGA-GM-A2DB TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL 
       34.03        17.49        79.10        85.15        86.96       115.69 
TCGA-GM-A2DM TCGA-GM-A2DO TCGA-GM-A3XG TCGA-LD-A9QF TCGA-LL-A440 TCGA-LL-A442 
      106.06        85.35        43.73        10.62        24.95        10.95 
TCGA-LL-A740 TCGA-LL-A7T0 TCGA-LL-A8F5 TCGA-OL-A5D6 TCGA-OL-A5D8 TCGA-OL-A5RY 
       14.50        12.36        14.73        36.30        31.99        24.72 
TCGA-OL-A5RZ TCGA-OL-A66H TCGA-OL-A66J TCGA-OL-A66P TCGA-OL-A6VR TCGA-PE-A5DC 
       22.32        26.70        65.62        14.07        40.11        47.01 
TCGA-PL-A8LX TCGA-PL-A8LY TCGA-S3-AA14 TCGA-S3-AA15 TCGA-XX-A89A 
        0.16         0.26        14.96        13.84        16.04 

  AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE 
                       0.03                        0.03 
  AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE 
                     234.28                      160.90 
  AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE 
                      23.77                       24.79 
[1] "0.0 - 234.3 (23.8)" "0.0 - 160.9 (24.8)"
[1] "hr=" "1.5"
D3V2, continuous
                             vv
clus                          STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  AMP PEAK  3(1Q44) MUTATED        56       52        5        3       266
  AMP PEAK  3(1Q44) WILD-TYPE      33       29        3        0        87
                             vv
clus                          STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  AMP PEAK  3(1Q44) MUTATED         181         1        106         25
  AMP PEAK  3(1Q44) WILD-TYPE        64         1         44          4
                             vv
clus                          STAGE IIIC STAGE IV STAGE TIS STAGE X
  AMP PEAK  3(1Q44) MUTATED           51       14         1       8
  AMP PEAK  3(1Q44) WILD-TYPE         12        6         0       5
D3V3, multiclass
            clus
vv           AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  STAGE I                           56                          33
  STAGE IA                          52                          29
  STAGE IB                           5                           3
  STAGE II                           3                           0
  STAGE IIA                        266                          87
  STAGE IIB                        181                          64
  STAGE III                          1                           1
  STAGE IIIA                       106                          44
  STAGE IIIB                        25                           4
  STAGE IIIC                        51                          12
  STAGE IV                          14                           6
  STAGE TIS                          1                           0
  STAGE X                            8                           5
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                           T1  T2  T3  T4
  AMP PEAK  3(1Q44) MUTATED   176 467  95  33
  AMP PEAK  3(1Q44) WILD-TYPE  96 149  35   7
D3V4, multiclass
    clus
vv   AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  T1                       176                          96
  T2                       467                         149
  T3                        95                          35
  T4                        33                           7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                           N0  N1  N2  N3
  AMP PEAK  3(1Q44) MUTATED   360 262  80  60
  AMP PEAK  3(1Q44) WILD-TYPE 141  88  37  15
D3V5, multiclass
    clus
vv   AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  N0                       360                         141
  N1                       262                          88
  N2                        80                          37
  N3                        60                          15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D3V6, binary
                             cls
clus                            0   1
  AMP PEAK  3(1Q44) MUTATED   637  14
  AMP PEAK  3(1Q44) WILD-TYPE 242   7
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  3(1Q44) MUTATED    637   14
  AMP PEAK  3(1Q44) WILD-TYPE  242    7
   clus
vv  AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  0                       637                         242
  1                        14                           7
[1] 2 2
[1] FALSE
D3V7, binary
                             cls
clus                            0   1
  AMP PEAK  3(1Q44) MUTATED   766   8
  AMP PEAK  3(1Q44) WILD-TYPE 285   3
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  3(1Q44) MUTATED    766    8
  AMP PEAK  3(1Q44) WILD-TYPE  285    3
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  FEMALE                       766                         285
  MALE                           8                           3
[1] 2 2
[1] FALSE
                             vv
clus                          INFILTRATING CARCINOMA NOS
  AMP PEAK  3(1Q44) MUTATED                            1
  AMP PEAK  3(1Q44) WILD-TYPE                          0
                             vv
clus                          INFILTRATING DUCTAL CARCINOMA
  AMP PEAK  3(1Q44) MUTATED                             544
  AMP PEAK  3(1Q44) WILD-TYPE                           219
                             vv
clus                          INFILTRATING LOBULAR CARCINOMA
  AMP PEAK  3(1Q44) MUTATED                              159
  AMP PEAK  3(1Q44) WILD-TYPE                             33
                             vv
clus                          MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  AMP PEAK  3(1Q44) MUTATED                     5                     3
  AMP PEAK  3(1Q44) WILD-TYPE                   1                     1
                             vv
clus                          MIXED HISTOLOGY (PLEASE SPECIFY)
  AMP PEAK  3(1Q44) MUTATED                                 21
  AMP PEAK  3(1Q44) WILD-TYPE                                9
                             vv
clus                          MUCINOUS CARCINOMA OTHER  SPECIFY
  AMP PEAK  3(1Q44) MUTATED                    9             32
  AMP PEAK  3(1Q44) WILD-TYPE                  8             16
D3V8, multiclass
                                  clus
vv                                 AMP PEAK  3(1Q44) MUTATED
  INFILTRATING CARCINOMA NOS                               1
  INFILTRATING DUCTAL CARCINOMA                          544
  INFILTRATING LOBULAR CARCINOMA                         159
  MEDULLARY CARCINOMA                                      5
  METAPLASTIC CARCINOMA                                    3
  MIXED HISTOLOGY (PLEASE SPECIFY)                        21
  MUCINOUS CARCINOMA                                       9
  OTHER  SPECIFY                                          32
                                  clus
vv                                 AMP PEAK  3(1Q44) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                 0
  INFILTRATING DUCTAL CARCINOMA                            219
  INFILTRATING LOBULAR CARCINOMA                            33
  MEDULLARY CARCINOMA                                        1
  METAPLASTIC CARCINOMA                                      1
  MIXED HISTOLOGY (PLEASE SPECIFY)                           9
  MUCINOUS CARCINOMA                                         8
  OTHER  SPECIFY                                            16
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D3V9, binary
                             cls
clus                            0   1
  AMP PEAK  3(1Q44) MUTATED   211 563
  AMP PEAK  3(1Q44) WILD-TYPE  77 211
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  3(1Q44) MUTATED    211  563
  AMP PEAK  3(1Q44) WILD-TYPE   77  211
     clus
vv    AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  NO                        211                          77
  YES                       563                         211
[1] 2 2
[1] FALSE
D3V10, continuous
                             vv
clus                          AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK  3(1Q44) MUTATED                                  1    35
  AMP PEAK  3(1Q44) WILD-TYPE                                0    25
                             vv
clus                          BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK  3(1Q44) MUTATED                         125   546
  AMP PEAK  3(1Q44) WILD-TYPE                        45   190
D3V11, multiclass
                                  clus
vv                                 AMP PEAK  3(1Q44) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                         1
  ASIAN                                                   35
  BLACK OR AFRICAN AMERICAN                              125
  WHITE                                                  546
                                  clus
vv                                 AMP PEAK  3(1Q44) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                           0
  ASIAN                                                     25
  BLACK OR AFRICAN AMERICAN                                 45
  WHITE                                                    190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D3V12, binary
                             cls
clus                            0   1
  AMP PEAK  3(1Q44) MUTATED    23 625
  AMP PEAK  3(1Q44) WILD-TYPE  15 233
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  3(1Q44) MUTATED     23  625
  AMP PEAK  3(1Q44) WILD-TYPE   15  233
                        clus
vv                       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  HISPANIC OR LATINO                            23                          15
  NOT HISPANIC OR LATINO                       625                         233
[1] 2 2
[1] FALSE

Clustering(4) Variable = AMP PEAK  4(3P25.1) MUTATION ANALYSIS
D4V1, survival
                               sevent
clus2                             0   1
  AMP PEAK  4(3P25.1) MUTATED   164  31
  AMP PEAK  4(3P25.1) WILD-TYPE 752  97
  AMP PEAK  4(3P25.1) MUTATED AMP PEAK  4(3P25.1) WILD-TYPE 
                          195                           849 
  AMP PEAK  4(3P25.1) MUTATED AMP PEAK  4(3P25.1) WILD-TYPE 
                           31                            97 
$`AMP PEAK  4(3P25.1) MUTATED`
TCGA-3C-AALI TCGA-A1-A0SO TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A0CM TCGA-A2-A0CS 
      131.67        28.01        73.84        87.25        24.79        75.55 
TCGA-A2-A0CT TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0CX TCGA-A2-A0SV TCGA-A2-A0T7 
       75.25        98.99       107.93        56.81        27.12        20.75 
TCGA-A2-A0YT TCGA-A2-A1FW TCGA-A2-A1FZ TCGA-A2-A25E TCGA-A2-A4S3 TCGA-A7-A0CD 
       23.77        17.36        22.45       105.34        21.90        38.30 
TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A13F TCGA-A7-A13H TCGA-A7-A26F TCGA-A7-A425 
       35.67        33.11        25.15        29.56        24.26        14.70 
TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A56D TCGA-A7-A5ZV TCGA-A8-A06O TCGA-A8-A06Q 
       14.50        21.17        14.73        12.10        13.02         1.02 
TCGA-A8-A06R TCGA-A8-A06X TCGA-A8-A075 TCGA-A8-A079 TCGA-A8-A084 TCGA-A8-A08C 
       17.98        31.00        17.03         9.01        15.06        28.96 
TCGA-A8-A08F TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08P TCGA-A8-A08X 
       33.01        12.00        37.05         9.99        31.00        43.00 
TCGA-A8-A091 TCGA-A8-A093 TCGA-A8-A097 TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09D 
       33.01        17.95        12.00         9.99        12.00        50.04 
TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K TCGA-A8-A09Q TCGA-A8-A09R TCGA-A8-A09W 
       49.05        45.07        29.98        25.02         8.98         0.99 
TCGA-A8-A09X TCGA-AC-A23H TCGA-AC-A2FM TCGA-AC-A2QJ TCGA-AC-A8OP TCGA-AN-A03Y 
       14.01         5.72        26.04         2.27        20.19         0.33 
TCGA-AN-A049 TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FX TCGA-AN-A0FZ TCGA-AN-A0XN 
        0.62         0.33         0.33         0.33         0.33         0.33 
TCGA-AN-A0XO TCGA-AO-A0J4 TCGA-AO-A0J6 TCGA-AO-A0J7 TCGA-AO-A0JB TCGA-AO-A0JM 
       12.33        52.18        37.48        20.32        50.70        71.80 
TCGA-AO-A128 TCGA-AO-A12D TCGA-AO-A1KT TCGA-AQ-A04H TCGA-AQ-A54O TCGA-AR-A0U2 
      106.78        64.04        17.79        24.79        32.91        83.87 
TCGA-AR-A1AS TCGA-AR-A24K TCGA-AR-A24Q TCGA-AR-A24V TCGA-AR-A24Z TCGA-AR-A2LL 
       37.81        50.89       104.28        85.35        79.00        66.15 
TCGA-AR-A2LR TCGA-B6-A0I9 TCGA-B6-A0IA TCGA-B6-A0RE TCGA-B6-A0RP TCGA-B6-A0RS 
       20.38        12.13       220.90       211.56       102.77       100.70 
TCGA-B6-A0RU TCGA-B6-A0WV TCGA-B6-A0X1 TCGA-B6-A1KC TCGA-B6-A401 TCGA-B6-A408 
      131.21        79.63       186.48        43.59        85.35        68.12 
TCGA-BH-A0AU TCGA-BH-A0AV TCGA-BH-A0B5 TCGA-BH-A0B6 TCGA-BH-A0BF TCGA-BH-A0BL 
       24.53        59.84        48.36        56.94        25.71        44.05 
TCGA-BH-A0BT TCGA-BH-A0C0 TCGA-BH-A0DS TCGA-BH-A0E2 TCGA-BH-A0E6 TCGA-BH-A0E9 
       45.57        41.75         2.56        14.30         9.63        46.19 
TCGA-BH-A0EB TCGA-BH-A0HI TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A18J TCGA-BH-A18N 
       24.49        20.38        27.25        50.79        20.12        37.74 
TCGA-BH-A18R TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1FC 
       37.55         7.36        51.39        12.00        55.69       114.15 
TCGA-BH-A1FM TCGA-BH-A1FN TCGA-BH-A202 TCGA-BH-A203 TCGA-BH-A5J0 TCGA-C8-A12M 
       45.63        72.07        26.14        38.60        23.51        11.77 
TCGA-C8-A12O TCGA-C8-A12Q TCGA-C8-A12U TCGA-C8-A12W TCGA-C8-A12Z TCGA-C8-A130 
       12.66        12.66        12.66        12.66         0.39         3.16 
TCGA-C8-A137 TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HM TCGA-C8-A278 TCGA-D8-A13Y 
        4.11        11.34        11.28         2.30         9.50        11.90 
TCGA-D8-A1JF TCGA-D8-A1JJ TCGA-D8-A1JL TCGA-D8-A1XA TCGA-D8-A1XK TCGA-D8-A1XQ 
       12.03        20.09        20.09        27.58        14.50        16.41 
TCGA-D8-A1XV TCGA-D8-A1Y2 TCGA-D8-A1Y3 TCGA-D8-A27H TCGA-D8-A27R TCGA-D8-A73X 
       15.16        14.24        14.14        13.05        10.09        12.10 
TCGA-E2-A109 TCGA-E2-A10B TCGA-E2-A14O TCGA-E2-A14R TCGA-E2-A14T TCGA-E2-A14Z 
       46.59        37.51        44.68        38.60        33.30        18.51 
TCGA-E2-A154 TCGA-E2-A15E TCGA-E2-A15G TCGA-E2-A15L TCGA-E2-A15S TCGA-E2-A1AZ 
       19.43        20.71        18.21        20.58        14.07        60.53 
TCGA-E2-A1B0 TCGA-E2-A1IH TCGA-E2-A1LE TCGA-E2-A1LG TCGA-E9-A1N8 TCGA-E9-A1N9 
       53.62        33.73        28.90        18.87        12.00        13.12 
TCGA-E9-A1R4 TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RF TCGA-E9-A1RG TCGA-E9-A1RH 
        6.12        32.09        40.24         6.58        21.27        34.59 
TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A243 TCGA-E9-A2JS TCGA-E9-A54Y TCGA-E9-A5UP 
       12.89        23.51        17.06        29.72        23.84        14.40 
TCGA-EW-A1J6 TCGA-EW-A1OY TCGA-EW-A1OZ TCGA-EW-A1PH TCGA-EW-A3U0 TCGA-GM-A2DD 
       28.77        29.85        40.41        19.96        17.49        75.02 
TCGA-GM-A2DF TCGA-GM-A3XL TCGA-LL-A5YM TCGA-LL-A5YP TCGA-LL-A6FR TCGA-LL-A8F5 
       70.85        69.30        15.32        14.79        16.08        14.73 
TCGA-OL-A5D7 TCGA-PE-A5DC TCGA-S3-A6ZF 
       58.52        47.01        16.50 

$`AMP PEAK  4(3P25.1) WILD-TYPE`
TCGA-3C-AAAU TCGA-3C-AALJ TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT0 TCGA-5L-AAT1 
      129.14        42.81        40.14        11.44        48.56        48.36 
TCGA-5T-A9QA TCGA-A1-A0SB TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG 
        9.96         8.52        14.37        43.43        48.10        14.27 
TCGA-A1-A0SH TCGA-A1-A0SI TCGA-A1-A0SJ TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SN 
       47.24        20.88        13.68        31.79         7.96        39.32 
TCGA-A1-A0SP TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04P TCGA-A2-A04Q TCGA-A2-A04R 
       19.20        18.21       104.81        18.02        78.41       121.94 
TCGA-A2-A04V TCGA-A2-A04W TCGA-A2-A04X TCGA-A2-A04Y TCGA-A2-A0CK TCGA-A2-A0CL 
       63.12       101.98        55.43        36.13       136.73        99.12 
TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CQ TCGA-A2-A0CR TCGA-A2-A0CU TCGA-A2-A0D0 
      114.81        92.48        88.60       107.93         5.19        67.33 
TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0D4 TCGA-A2-A0EM TCGA-A2-A0EN 
       34.55        33.76        61.58        25.22       101.72       134.40 
TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0EQ TCGA-A2-A0ER TCGA-A2-A0ES TCGA-A2-A0ET 
       80.28       107.61        79.76        74.40        72.00        35.05 
TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0EY TCGA-A2-A0ST 
       34.29        31.82        61.94        24.72        63.29        99.19 
TCGA-A2-A0SU TCGA-A2-A0SW TCGA-A2-A0SX TCGA-A2-A0SY TCGA-A2-A0T0 TCGA-A2-A0T1 
       54.64        44.88        50.43        44.28        17.52        17.13 
TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T4 TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0YC 
        8.38        49.84        20.52        17.46        18.90        32.55 
TCGA-A2-A0YD TCGA-A2-A0YE TCGA-A2-A0YF TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A0YI 
       25.28        18.21        50.47        21.90        21.67        49.48 
TCGA-A2-A0YJ TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A0YM TCGA-A2-A1FV TCGA-A2-A1FX 
       18.61        19.33        48.46        31.73        23.47        60.72 
TCGA-A2-A1G0 TCGA-A2-A1G1 TCGA-A2-A1G4 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25A 
       20.25        19.20        19.56        16.47        52.47       107.70 
TCGA-A2-A25B TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD 
       42.44        17.19        18.15        10.59        20.88        39.65 
TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX 
       33.93        83.01        29.98        32.75        49.48        47.31 
TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4RY 
       34.98        50.37        38.37         7.30        24.39        21.30 
TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A7-A0CE TCGA-A7-A0CG TCGA-A7-A0CH 
       23.21        26.96        21.14        35.31        34.29        35.47 
TCGA-A7-A0CJ TCGA-A7-A0D9 TCGA-A7-A0DC TCGA-A7-A13D TCGA-A7-A13E TCGA-A7-A13G 
       30.61        37.45        29.79        31.73        20.19        23.61 
TCGA-A7-A26E TCGA-A7-A26G TCGA-A7-A26H TCGA-A7-A26I TCGA-A7-A26J TCGA-A7-A2KD 
       31.36        23.74        23.80        21.73        20.61        22.32 
TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3J1 TCGA-A7-A3RF TCGA-A7-A426 
       11.34        10.59        10.29        11.28        13.41        11.97 
TCGA-A7-A4SA TCGA-A7-A4SB TCGA-A7-A4SF TCGA-A7-A5ZW TCGA-A7-A5ZX TCGA-A7-A6VV 
       14.93        13.74        17.92        10.72        11.05        10.29 
TCGA-A7-A6VW TCGA-A7-A6VX TCGA-A7-A6VY TCGA-A8-A06P TCGA-A8-A06T TCGA-A8-A06U 
        9.37        10.42         8.75        13.02        53.06        29.03 
TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A076 TCGA-A8-A07B TCGA-A8-A07E TCGA-A8-A07F 
       26.01         1.02        53.98        43.00        19.99        18.97 
TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07L TCGA-A8-A07O TCGA-A8-A07P 
       18.97        14.01        12.00        32.05         9.99        10.98 
TCGA-A8-A07R TCGA-A8-A07S TCGA-A8-A07U TCGA-A8-A07W TCGA-A8-A07Z TCGA-A8-A082 
        8.98         7.99        24.99         9.99        45.07        18.05 
TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08B TCGA-A8-A08G TCGA-A8-A08O 
       36.95        13.02         0.99        38.01        19.96        31.00 
TCGA-A8-A08R TCGA-A8-A08S TCGA-A8-A08T TCGA-A8-A08Z TCGA-A8-A092 TCGA-A8-A095 
        0.99        33.01       112.08        40.01        30.97        41.98 
TCGA-A8-A099 TCGA-A8-A09C TCGA-A8-A09M TCGA-A8-A09N TCGA-A8-A09T TCGA-A8-A09V 
        9.99         1.02        33.07         1.02        19.04        15.02 
TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A7 TCGA-A8-A0A9 
       12.00        19.04        13.02        21.04         0.99        27.02 
TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23E TCGA-AC-A23G TCGA-AC-A2B8 
       17.03        38.04         0.95         2.37        10.85         1.48 
TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK 
       38.53        99.35        40.57        55.43        36.99        38.79 
TCGA-AC-A2FO TCGA-AC-A2QH TCGA-AC-A2QI TCGA-AC-A3BB TCGA-AC-A3HN TCGA-AC-A3OD 
       50.70        33.04         0.92        32.45        16.31        14.83 
TCGA-AC-A3QP TCGA-AC-A3TN TCGA-AC-A3W5 TCGA-AC-A3W6 TCGA-AC-A3YI TCGA-AC-A3YJ 
       22.19        14.99        16.57        19.79        23.24        24.79 
TCGA-AC-A5XS TCGA-AC-A62V TCGA-AC-A62X TCGA-AC-A62Y TCGA-AC-A6IV TCGA-AC-A6IW 
        1.55        11.44        13.71        17.42        18.67        13.58 
TCGA-AC-A6IX TCGA-AC-A6NO TCGA-AC-A7VB TCGA-AC-A7VC TCGA-AC-A8OQ TCGA-AC-A8OR 
       12.26         1.68         8.22         0.03         1.12         1.32 
TCGA-AC-A8OS TCGA-AN-A03X TCGA-AN-A041 TCGA-AN-A046 TCGA-AN-A04A TCGA-AN-A04C 
        2.30         0.33         0.23         0.33         2.96         1.78 
TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AK TCGA-AN-A0AL TCGA-AN-A0AM TCGA-AN-A0AR 
        1.71         9.96         7.36         6.51         0.16         0.33 
TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FN 
        6.44         5.65         7.96         7.00         7.59         7.17 
TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FY TCGA-AN-A0XL 
        6.28         7.04         0.33         0.36         0.33         0.33 
TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AN-A0XV 
        0.30         0.33         0.33         0.33         0.33         5.33 
TCGA-AN-A0XW TCGA-AO-A03L TCGA-AO-A03M TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03P 
        5.59        80.28        61.35        66.77        81.63        95.70 
TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J2 TCGA-AO-A0J3 
       68.75        47.87        58.95        29.13        32.78        21.40 
TCGA-AO-A0J5 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JC TCGA-AO-A0JD 
       26.04        22.36        53.03        21.53        50.86        72.00 
TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JG TCGA-AO-A0JI TCGA-AO-A0JJ TCGA-AO-A0JL 
       76.77        21.37        26.24        50.24        62.04        55.33 
TCGA-AO-A124 TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A129 TCGA-AO-A12A TCGA-AO-A12B 
      102.58        99.25       108.72       108.03        90.58        98.27 
TCGA-AO-A12E TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP 
       57.30        48.36        41.62        28.37        14.73        82.62 
TCGA-AO-A1KQ TCGA-AO-A1KR TCGA-AO-A1KS TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A0Y5 
       61.87        70.39         0.53        26.93       130.09         5.65 
TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AQ-A54N TCGA-AQ-A7U7 TCGA-AR-A0TP TCGA-AR-A0TQ 
       15.62        32.52         2.56        19.20       111.32        73.64 
TCGA-AR-A0TR TCGA-AR-A0TS TCGA-AR-A0TT TCGA-AR-A0TV TCGA-AR-A0TW TCGA-AR-A0TX 
        5.26        74.79        86.66        42.35        98.93        64.83 
TCGA-AR-A0TY TCGA-AR-A0TZ TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A0U3 TCGA-AR-A0U4 
       55.86       107.24        65.36       101.95       114.02        85.97 
TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AM 
       75.55        61.84        52.77        51.25        48.82        76.11 
TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AQ TCGA-AR-A1AR TCGA-AR-A1AU 
       43.73        43.56        39.98        43.07        17.23        76.21 
TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24L 
       61.28        63.62        62.14        33.73       160.90        94.22 
TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24R TCGA-AR-A24S 
       96.89        78.51        84.20         2.76        87.22        97.84 
TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A250 TCGA-AR-A251 
       76.01        53.36        50.96        83.77        89.00        78.48 
TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LE TCGA-AR-A2LH 
       73.18        72.76        58.92        93.83       143.21        20.25 
TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ 
       62.86        54.21        52.11        38.17        39.39        40.54 
TCGA-AR-A5QM TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I2 
       54.74        16.04        20.45        10.59        77.62       143.38 
TCGA-B6-A0I5 TCGA-B6-A0IB TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IH 
      149.59       129.57        50.70        65.72       146.50       112.37 
TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IO TCGA-B6-A0IP 
      176.98        18.77       126.12        84.59       110.14       110.93 
TCGA-B6-A0IQ TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RL TCGA-B6-A0RM 
      140.88        68.45       189.01       234.28        81.17        78.02 
TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RV TCGA-B6-A0WS 
      172.96       162.05       140.48        89.46       157.41        97.48 
TCGA-B6-A0WT TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WY TCGA-B6-A0WZ TCGA-B6-A0X0 
      188.68        18.35        21.47       113.79       129.57       129.70 
TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A1KN 
       28.27        68.94        58.88       101.52        73.51       139.17 
TCGA-B6-A2IU TCGA-B6-A402 TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AW TCGA-BH-A0AY 
      170.17        74.99       103.63        71.15        20.45        25.55 
TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B2 TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B7 
       28.50        46.95        40.83        39.55        39.16        56.98 
TCGA-BH-A0B9 TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BG TCGA-BH-A0BJ 
       51.68        37.22        32.02        18.21        24.85        21.70 
TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BP TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS 
       61.68        35.67        48.69        27.19        53.69        53.95 
TCGA-BH-A0BV TCGA-BH-A0BW TCGA-BH-A0BZ TCGA-BH-A0C1 TCGA-BH-A0C3 TCGA-BH-A0C7 
       49.94        11.67        49.05        44.02        48.13        42.90 
TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DK 
       45.83        31.17        23.44        38.01        22.13        13.91 
TCGA-BH-A0DL TCGA-BH-A0DO TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0DT TCGA-BH-A0DV 
       48.23        17.26        15.65         3.22        38.47        67.86 
TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E7 TCGA-BH-A0EA 
       47.41        16.27         4.41        15.68        44.81        32.58 
TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 
       31.00        24.43        30.35        10.78        15.16        37.78 
TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H7 TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0HB 
       35.51        24.56        23.08        41.00        52.96        26.50 
TCGA-BH-A0HK TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW 
        5.85         2.50        13.61        36.85        12.89        51.32 
TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A0WA 
        5.59        23.93        24.95        42.35        44.81        23.05 
TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18M 
        8.81         2.01         7.23        90.84        26.66        72.56 
TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18S TCGA-BH-A18V TCGA-BH-A1EN TCGA-BH-A1EO 
       30.28        55.63        66.05        51.16        69.93        91.99 
TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EX TCGA-BH-A1EY TCGA-BH-A1F0 
      113.82        82.85        42.28        49.58        17.69        25.81 
TCGA-BH-A1F2 TCGA-BH-A1F5 TCGA-BH-A1F6 TCGA-BH-A1F8 TCGA-BH-A1FB TCGA-BH-A1FD 
       31.53        89.16        97.48        24.66       120.62        33.17 
TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FR 
       74.73       122.89        36.92        63.35        55.00       144.59 
TCGA-BH-A1FU TCGA-BH-A201 TCGA-BH-A204 TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A28O 
       72.07        28.14        83.31        57.83       130.16        10.65 
TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5IZ 
        6.44        20.12        10.52       109.28         8.94        18.64 
TCGA-BH-A6R8 TCGA-BH-A6R9 TCGA-BH-A8FY TCGA-BH-A8FZ TCGA-BH-A8G0 TCGA-BH-AB28 
        9.63         5.26         9.70        18.87        21.76         9.44 
TCGA-C8-A12L TCGA-C8-A12N TCGA-C8-A12P TCGA-C8-A12V TCGA-C8-A12X TCGA-C8-A131 
       11.93        11.77        11.77        12.66        12.66         2.24 
TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A135 TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HF 
        1.87         1.12         1.05         4.08        12.33        10.92 
TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HL TCGA-C8-A1HN TCGA-C8-A26V TCGA-C8-A26W 
        0.16        12.03        10.42         3.25         0.30         0.23 
TCGA-C8-A26X TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A275 
        0.36         0.43         8.28         9.67         9.53         0.03 
TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-C8-A8HP TCGA-C8-A8HQ 
       12.20         0.99         0.03         0.23        13.02        12.49 
TCGA-C8-A8HR TCGA-C8-A9FZ TCGA-D8-A13Z TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A142 
       13.41        19.46        20.88        13.25        20.58        13.97 
TCGA-D8-A143 TCGA-D8-A145 TCGA-D8-A146 TCGA-D8-A147 TCGA-D8-A1J8 TCGA-D8-A1J9 
       14.17        13.48        21.14        19.20        14.17        17.49 
TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JG 
       16.50        18.71        15.78        18.15        18.90        12.03 
TCGA-D8-A1JH TCGA-D8-A1JI TCGA-D8-A1JK TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1JP 
       14.01        18.97        20.12        19.40        20.38        21.01 
TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X7 
       12.20        13.32        14.70        18.58        17.79        16.73 
TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XD TCGA-D8-A1XF 
       25.74        23.90        18.15        12.39        17.16        15.22 
TCGA-D8-A1XG TCGA-D8-A1XJ TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XR 
       14.73        21.83        19.92        17.69        15.55        15.85 
TCGA-D8-A1XS TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1XW TCGA-D8-A1XY TCGA-D8-A1XZ 
       16.31         6.35        12.99        12.66        16.54        15.32 
TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27G TCGA-D8-A27I 
       15.52         9.93        17.42        16.04        13.45        14.43 
TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27T 
        9.44        16.41        13.48         4.80         0.76        13.08 
TCGA-D8-A27V TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-D8-A73U 
       12.53        12.26        33.37        18.51        21.67        16.18 
TCGA-D8-A73W TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A10A TCGA-E2-A10C 
        8.02        43.00        34.42        27.52        40.41        40.11 
TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14P TCGA-E2-A14Q TCGA-E2-A14S 
       28.44        28.87        47.15        40.96        38.24        33.17 
TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14W TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A150 
       43.33        34.26        32.02        31.96        28.60        25.41 
TCGA-E2-A152 TCGA-E2-A153 TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A158 TCGA-E2-A159 
       27.12        23.24        21.04        23.87        14.79        25.05 
TCGA-E2-A15A TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15F TCGA-E2-A15H TCGA-E2-A15I 
       23.34        22.82        17.29        21.63        12.92        17.42 
TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15M TCGA-E2-A15O TCGA-E2-A15P TCGA-E2-A15R 
       19.40         9.04        11.05        13.02        19.56        17.06 
TCGA-E2-A15T TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BC 
       14.99        53.03        33.01        32.35        28.50        16.47 
TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1II TCGA-E2-A1IJ 
       17.10        38.30        37.41        32.78        33.70        28.44 
TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IO TCGA-E2-A1IU TCGA-E2-A1L6 
       22.65         3.88        22.19        20.98        11.08        54.18 
TCGA-E2-A1L7 TCGA-E2-A1L8 TCGA-E2-A1L9 TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LH 
       27.42        39.62        19.66        24.59        40.47       106.75 
TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A1LL TCGA-E2-A2P5 TCGA-E2-A2P6 TCGA-E2-A3DX 
      102.61         8.75        43.04        16.93         5.52        15.72 
TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A573 TCGA-E2-A574 TCGA-E2-A576 TCGA-E2-A9RU 
        8.28        30.61        34.92        26.56        34.29        12.85 
TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N6 TCGA-E9-A1NA TCGA-E9-A1NC 
       34.82        32.88        36.82        13.48        36.56        39.55 
TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1NI TCGA-E9-A1QZ 
       12.59        35.77        35.24        25.84         9.86        11.90 
TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1R7 
       28.27        34.95         2.56         3.02         2.76        21.21 
TCGA-E9-A1RA TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RI TCGA-E9-A226 TCGA-E9-A227 
       32.09         1.12        34.65        35.64        34.13        32.05 
TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A22D TCGA-E9-A22H 
       12.53        13.32        39.09        22.75        41.03        20.71 
TCGA-E9-A244 TCGA-E9-A247 TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A295 
        0.69        27.22         1.94         7.13        24.56         0.72 
TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3QA TCGA-E9-A3X8 TCGA-E9-A54X 
        0.76        26.07        18.41        30.18        15.72        12.33 
TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UO TCGA-E9-A6HE TCGA-EW-A1IW TCGA-EW-A1IX 
       14.70         0.79        13.81        15.39        12.20        39.72 
TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J5 
        8.48        18.21        18.90        13.25        16.57        15.68 
TCGA-EW-A1OV TCGA-EW-A1OW TCGA-EW-A1OX TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P3 
       25.94        22.82        29.95        41.13        39.78        52.96 
TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1P8 TCGA-EW-A1PA 
       29.82        23.11        18.48        30.08         7.86        18.90 
TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PF TCGA-EW-A1PG 
       19.99         6.15        13.94        10.52        14.43        34.55 
TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A423 
       55.00        52.73        25.91        22.09        34.03        10.16 
TCGA-EW-A424 TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DB 
       23.51         7.40       109.87        59.57       216.76        79.10 
TCGA-GM-A2DC TCGA-GM-A2DH TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM 
       83.34        72.10        85.15        86.96       115.69       106.06 
TCGA-GM-A2DN TCGA-GM-A2DO TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XN 
      101.62        85.35       110.50        38.20        43.73        66.38 
TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2NL TCGA-HN-A2OB TCGA-JL-A3YW 
       72.03        13.55        18.12         2.60        62.43        11.84 
TCGA-JL-A3YX TCGA-LD-A66U TCGA-LD-A74U TCGA-LD-A7W5 TCGA-LD-A7W6 TCGA-LD-A9QF 
       11.57        21.24        13.22         7.10        13.28        10.62 
TCGA-LL-A440 TCGA-LL-A441 TCGA-LL-A442 TCGA-LL-A50Y TCGA-LL-A5YL TCGA-LL-A5YN 
       24.95        11.44        10.95        25.05        17.06        14.70 
TCGA-LL-A5YO TCGA-LL-A6FP TCGA-LL-A6FQ TCGA-LL-A73Y TCGA-LL-A73Z TCGA-LL-A740 
       14.47        22.26         2.63        15.68         7.46        14.50 
TCGA-LL-A7SZ TCGA-LL-A7T0 TCGA-LL-A9Q3 TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 
       14.70        12.36        14.07        27.91        22.39         2.10 
TCGA-OL-A5D6 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RU TCGA-OL-A5RV TCGA-OL-A5RW 
       36.30        31.99        58.62        40.08        34.92        36.36 
TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66H TCGA-OL-A66I 
       28.87        24.72        22.32        20.38        26.70        23.47 
TCGA-OL-A66J TCGA-OL-A66K TCGA-OL-A66L TCGA-OL-A66N TCGA-OL-A66O TCGA-OL-A66P 
       65.62        41.92        42.77        26.04        17.36        14.07 
TCGA-OL-A6VO TCGA-OL-A6VQ TCGA-OL-A6VR TCGA-OL-A97C TCGA-PE-A5DD TCGA-PE-A5DE 
       28.21        19.73        40.11         8.91        64.21        86.96 
TCGA-PL-A8LX TCGA-PL-A8LY TCGA-PL-A8LZ TCGA-S3-A6ZG TCGA-S3-A6ZH TCGA-S3-AA0Z 
        0.16         0.26         9.93        13.12        16.93        16.80 
TCGA-S3-AA10 TCGA-S3-AA11 TCGA-S3-AA12 TCGA-S3-AA14 TCGA-S3-AA15 TCGA-S3-AA17 
       15.39        13.84        15.35        14.96        13.84        13.94 
TCGA-UL-AAZ6 TCGA-UU-A93S TCGA-W8-A86G TCGA-WT-AB41 TCGA-WT-AB44 TCGA-XX-A899 
       17.03         3.81        11.41        52.96        29.03        15.35 
TCGA-XX-A89A TCGA-Z7-A8R5 TCGA-Z7-A8R6 
       16.04       108.07       107.05 

  AMP PEAK  4(3P25.1) MUTATED AMP PEAK  4(3P25.1) WILD-TYPE 
                         0.33                          0.03 
  AMP PEAK  4(3P25.1) MUTATED AMP PEAK  4(3P25.1) WILD-TYPE 
                       220.90                        234.28 
  AMP PEAK  4(3P25.1) MUTATED AMP PEAK  4(3P25.1) WILD-TYPE 
                        24.49                         24.56 
[1] "0.3 - 220.9 (24.5)" "0.0 - 234.3 (24.6)"
[1] "hr=" "1.5"
D4V2, continuous
                               vv
clus                            STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  AMP PEAK  4(3P25.1) MUTATED        12       12        0        1        79
  AMP PEAK  4(3P25.1) WILD-TYPE      77       69        8        2       274
                               vv
clus                            STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  AMP PEAK  4(3P25.1) MUTATED          34         0         33         10
  AMP PEAK  4(3P25.1) WILD-TYPE       211         2        117         19
                               vv
clus                            STAGE IIIC STAGE IV STAGE TIS STAGE X
  AMP PEAK  4(3P25.1) MUTATED            8        6         0       2
  AMP PEAK  4(3P25.1) WILD-TYPE         55       14         1      11
D4V3, multiclass
            clus
vv           AMP PEAK  4(3P25.1) MUTATED AMP PEAK  4(3P25.1) WILD-TYPE
  STAGE I                             12                            77
  STAGE IA                            12                            69
  STAGE IB                             0                             8
  STAGE II                             1                             2
  STAGE IIA                           79                           274
  STAGE IIB                           34                           211
  STAGE III                            0                             2
  STAGE IIIA                          33                           117
  STAGE IIIB                          10                            19
  STAGE IIIC                           8                            55
  STAGE IV                             6                            14
  STAGE TIS                            0                             1
  STAGE X                              2                            11
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                             T1  T2  T3  T4
  AMP PEAK  4(3P25.1) MUTATED    37 132  14  13
  AMP PEAK  4(3P25.1) WILD-TYPE 235 484 116  27
D4V4, multiclass
    clus
vv   AMP PEAK  4(3P25.1) MUTATED AMP PEAK  4(3P25.1) WILD-TYPE
  T1                          37                           235
  T2                         132                           484
  T3                          14                           116
  T4                          13                            27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                             N0  N1  N2  N3
  AMP PEAK  4(3P25.1) MUTATED    94  54  33  12
  AMP PEAK  4(3P25.1) WILD-TYPE 407 296  84  63
D4V5, multiclass
    clus
vv   AMP PEAK  4(3P25.1) MUTATED AMP PEAK  4(3P25.1) WILD-TYPE
  N0                          94                           407
  N1                          54                           296
  N2                          33                            84
  N3                          12                            63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D4V6, binary
                               cls
clus                              0   1
  AMP PEAK  4(3P25.1) MUTATED   180   6
  AMP PEAK  4(3P25.1) WILD-TYPE 699  15
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  4(3P25.1) MUTATED    180    6
  AMP PEAK  4(3P25.1) WILD-TYPE  699   15
   clus
vv  AMP PEAK  4(3P25.1) MUTATED AMP PEAK  4(3P25.1) WILD-TYPE
  0                         180                           699
  1                           6                            15
[1] 2 2
[1] FALSE
D4V7, binary
                               cls
clus                              0   1
  AMP PEAK  4(3P25.1) MUTATED   196   1
  AMP PEAK  4(3P25.1) WILD-TYPE 855  10
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  4(3P25.1) MUTATED    196    1
  AMP PEAK  4(3P25.1) WILD-TYPE  855   10
        clus
vv       AMP PEAK  4(3P25.1) MUTATED AMP PEAK  4(3P25.1) WILD-TYPE
  FEMALE                         196                           855
  MALE                             1                            10
[1] 2 2
[1] FALSE
                               vv
clus                            INFILTRATING CARCINOMA NOS
  AMP PEAK  4(3P25.1) MUTATED                            1
  AMP PEAK  4(3P25.1) WILD-TYPE                          0
                               vv
clus                            INFILTRATING DUCTAL CARCINOMA
  AMP PEAK  4(3P25.1) MUTATED                             167
  AMP PEAK  4(3P25.1) WILD-TYPE                           596
                               vv
clus                            INFILTRATING LOBULAR CARCINOMA
  AMP PEAK  4(3P25.1) MUTATED                               14
  AMP PEAK  4(3P25.1) WILD-TYPE                            178
                               vv
clus                            MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  AMP PEAK  4(3P25.1) MUTATED                     1                     0
  AMP PEAK  4(3P25.1) WILD-TYPE                   5                     4
                               vv
clus                            MIXED HISTOLOGY (PLEASE SPECIFY)
  AMP PEAK  4(3P25.1) MUTATED                                  5
  AMP PEAK  4(3P25.1) WILD-TYPE                               25
                               vv
clus                            MUCINOUS CARCINOMA OTHER  SPECIFY
  AMP PEAK  4(3P25.1) MUTATED                    1              8
  AMP PEAK  4(3P25.1) WILD-TYPE                 16             40
D4V8, multiclass
                                  clus
vv                                 AMP PEAK  4(3P25.1) MUTATED
  INFILTRATING CARCINOMA NOS                                 1
  INFILTRATING DUCTAL CARCINOMA                            167
  INFILTRATING LOBULAR CARCINOMA                            14
  MEDULLARY CARCINOMA                                        1
  METAPLASTIC CARCINOMA                                      0
  MIXED HISTOLOGY (PLEASE SPECIFY)                           5
  MUCINOUS CARCINOMA                                         1
  OTHER  SPECIFY                                             8
                                  clus
vv                                 AMP PEAK  4(3P25.1) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                   0
  INFILTRATING DUCTAL CARCINOMA                              596
  INFILTRATING LOBULAR CARCINOMA                             178
  MEDULLARY CARCINOMA                                          5
  METAPLASTIC CARCINOMA                                        4
  MIXED HISTOLOGY (PLEASE SPECIFY)                            25
  MUCINOUS CARCINOMA                                          16
  OTHER  SPECIFY                                              40
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D4V9, binary
                               cls
clus                              0   1
  AMP PEAK  4(3P25.1) MUTATED    57 140
  AMP PEAK  4(3P25.1) WILD-TYPE 231 634
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  4(3P25.1) MUTATED     57  140
  AMP PEAK  4(3P25.1) WILD-TYPE  231  634
     clus
vv    AMP PEAK  4(3P25.1) MUTATED AMP PEAK  4(3P25.1) WILD-TYPE
  NO                           57                           231
  YES                         140                           634
[1] 2 2
[1] FALSE
D4V10, continuous
                               vv
clus                            AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK  4(3P25.1) MUTATED                                  0    14
  AMP PEAK  4(3P25.1) WILD-TYPE                                1    46
                               vv
clus                            BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK  4(3P25.1) MUTATED                          30   123
  AMP PEAK  4(3P25.1) WILD-TYPE                       140   613
D4V11, multiclass
                                  clus
vv                                 AMP PEAK  4(3P25.1) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                           0
  ASIAN                                                     14
  BLACK OR AFRICAN AMERICAN                                 30
  WHITE                                                    123
                                  clus
vv                                 AMP PEAK  4(3P25.1) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                             1
  ASIAN                                                       46
  BLACK OR AFRICAN AMERICAN                                  140
  WHITE                                                      613
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D4V12, binary
                               cls
clus                              0   1
  AMP PEAK  4(3P25.1) MUTATED     6 149
  AMP PEAK  4(3P25.1) WILD-TYPE  32 709
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  4(3P25.1) MUTATED      6  149
  AMP PEAK  4(3P25.1) WILD-TYPE   32  709
                        clus
vv                       AMP PEAK  4(3P25.1) MUTATED
  HISPANIC OR LATINO                               6
  NOT HISPANIC OR LATINO                         149
                        clus
vv                       AMP PEAK  4(3P25.1) WILD-TYPE
  HISPANIC OR LATINO                                32
  NOT HISPANIC OR LATINO                           709
[1] 2 2
[1] FALSE

Clustering(5) Variable = AMP PEAK  5(3Q26.32) MUTATION ANALYSIS
D5V1, survival
                                sevent
clus2                              0   1
  AMP PEAK  5(3Q26.32) MUTATED   292  39
  AMP PEAK  5(3Q26.32) WILD-TYPE 624  89
  AMP PEAK  5(3Q26.32) MUTATED AMP PEAK  5(3Q26.32) WILD-TYPE 
                           331                            713 
  AMP PEAK  5(3Q26.32) MUTATED AMP PEAK  5(3Q26.32) WILD-TYPE 
                            39                             89 
$`AMP PEAK  5(3Q26.32) MUTATED`
TCGA-3C-AAAU TCGA-3C-AALI TCGA-A1-A0SH TCGA-A1-A0SI TCGA-A1-A0SO TCGA-A1-A0SP 
      129.14       131.67        47.24        20.88        28.01        19.20 
TCGA-A2-A04P TCGA-A2-A04T TCGA-A2-A0CM TCGA-A2-A0CS TCGA-A2-A0CV TCGA-A2-A0CX 
       18.02        73.84        24.79        75.55        98.99        56.81 
TCGA-A2-A0D0 TCGA-A2-A0D2 TCGA-A2-A0EV TCGA-A2-A0EY TCGA-A2-A0SV TCGA-A2-A0SX 
       67.33        33.76        31.82        63.29        27.12        50.43 
TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T7 TCGA-A2-A0YE TCGA-A2-A0YG 
       17.13         8.38        49.84        20.75        18.21        21.90 
TCGA-A2-A0YM TCGA-A2-A0YT TCGA-A2-A1FW TCGA-A2-A1FZ TCGA-A2-A1G1 TCGA-A2-A25B 
       31.73        23.77        17.36        22.45        19.20        42.44 
TCGA-A2-A25D TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XY TCGA-A2-A4S1 TCGA-A7-A0CD 
       18.15        33.93        83.01        34.98        26.96        38.30 
TCGA-A7-A0CE TCGA-A7-A0CJ TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A13D TCGA-A7-A13F 
       35.31        30.61        35.67        33.11        31.73        25.15 
TCGA-A7-A26G TCGA-A7-A26H TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A56D TCGA-A7-A5ZV 
       23.74        23.80        14.50        21.17        14.73        12.10 
TCGA-A7-A6VV TCGA-A7-A6VX TCGA-A8-A06O TCGA-A8-A06Q TCGA-A8-A06R TCGA-A8-A06U 
       10.29        10.42        13.02         1.02        17.98        29.03 
TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A07G TCGA-A8-A07J TCGA-A8-A07L TCGA-A8-A07O 
        1.02        17.03        18.97        12.00        32.05         9.99 
TCGA-A8-A07R TCGA-A8-A07U TCGA-A8-A07W TCGA-A8-A085 TCGA-A8-A08B TCGA-A8-A08C 
        8.98        24.99         9.99        36.95        38.01        28.96 
TCGA-A8-A08F TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08P TCGA-A8-A08R 
       33.01        12.00        37.05         9.99        31.00         0.99 
TCGA-A8-A08X TCGA-A8-A091 TCGA-A8-A092 TCGA-A8-A093 TCGA-A8-A09A TCGA-A8-A09B 
       43.00        33.01        30.97        17.95         9.99        12.00 
TCGA-A8-A09C TCGA-A8-A09E TCGA-A8-A09K TCGA-A8-A09M TCGA-A8-A09Q TCGA-A8-A09R 
        1.02        49.05        29.98        33.07        25.02         8.98 
TCGA-AC-A23H TCGA-AC-A2FM TCGA-AC-A2QH TCGA-AC-A2QJ TCGA-AC-A3OD TCGA-AC-A62X 
        5.72        26.04        33.04         2.27        14.83        13.71 
TCGA-AC-A6IW TCGA-AC-A8OQ TCGA-AN-A03Y TCGA-AN-A041 TCGA-AN-A049 TCGA-AN-A04D 
       13.58         1.12         0.33         0.23         0.62         1.71 
TCGA-AN-A0AJ TCGA-AN-A0AL TCGA-AN-A0AM TCGA-AN-A0AS TCGA-AN-A0FF TCGA-AN-A0FJ 
        9.96         6.51         0.16         0.33         5.65         7.96 
TCGA-AN-A0FL TCGA-AN-A0FW TCGA-AN-A0FX TCGA-AN-A0FZ TCGA-AN-A0XL TCGA-AN-A0XN 
        7.59         0.36         0.33         0.33         0.33         0.33 
TCGA-AN-A0XO TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AO-A03L TCGA-AO-A03O TCGA-AO-A0J4 
       12.33         0.33         0.33        80.28        81.63        52.18 
TCGA-AO-A0J6 TCGA-AO-A0J7 TCGA-AO-A0JM TCGA-AO-A124 TCGA-AO-A128 TCGA-AO-A129 
       37.48        20.32        71.80       102.58       106.78       108.03 
TCGA-AO-A12D TCGA-AO-A1KQ TCGA-AO-A1KR TCGA-AQ-A04H TCGA-AQ-A04L TCGA-AQ-A54N 
       64.04        61.87        70.39        24.79       130.09         2.56 
TCGA-AQ-A54O TCGA-AR-A0TP TCGA-AR-A0TS TCGA-AR-A0U1 TCGA-AR-A0U4 TCGA-AR-A1AI 
       32.91       111.32        74.79       101.95        85.97        61.84 
TCGA-AR-A1AJ TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AS TCGA-AR-A24H TCGA-AR-A24K 
       52.77        43.73        43.56        37.81       160.90        50.89 
TCGA-AR-A24M TCGA-AR-A24Q TCGA-AR-A24V TCGA-AR-A251 TCGA-AR-A255 TCGA-AR-A256 
       96.89       104.28        85.35        78.48        58.92        93.83 
TCGA-AR-A2LL TCGA-AR-A2LR TCGA-AR-A5QP TCGA-B6-A0I2 TCGA-B6-A0IA TCGA-B6-A0IJ 
       66.15        20.38        20.45       143.38       220.90       176.98 
TCGA-B6-A0IK TCGA-B6-A0IQ TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RP TCGA-B6-A0RS 
       18.77       140.88        68.45       189.01       102.77       100.70 
TCGA-B6-A0RU TCGA-B6-A0WS TCGA-B6-A0WV TCGA-B6-A0WY TCGA-B6-A0X1 TCGA-B6-A1KC 
      131.21        97.48        79.63       113.79       186.48        43.59 
TCGA-B6-A1KF TCGA-B6-A401 TCGA-B6-A408 TCGA-BH-A0AU TCGA-BH-A0AW TCGA-BH-A0B3 
      101.52        85.35        68.12        24.53        20.45        39.55 
TCGA-BH-A0B4 TCGA-BH-A0B6 TCGA-BH-A0BC TCGA-BH-A0BL TCGA-BH-A0BR TCGA-BH-A0BT 
       39.16        56.94        32.02        44.05        53.69        45.57 
TCGA-BH-A0C0 TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DQ TCGA-BH-A0DS 
       41.75        22.13        13.91        48.23         3.22         2.56 
TCGA-BH-A0E6 TCGA-BH-A0E9 TCGA-BH-A0EB TCGA-BH-A0GY TCGA-BH-A0H7 TCGA-BH-A0HI 
        9.63        46.19        24.49        30.35        23.08        20.38 
TCGA-BH-A0HU TCGA-BH-A0HY TCGA-BH-A0WA TCGA-BH-A18N TCGA-BH-A18Q TCGA-BH-A18T 
       12.89        50.79        23.05        37.74        55.63         7.36 
TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1F0 TCGA-BH-A1FC 
       51.39        51.16        12.00        55.69        25.81       114.15 
TCGA-BH-A1FN TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A203 TCGA-BH-A208 TCGA-BH-A209 
       72.07        28.14        26.14        38.60        57.83       130.16 
TCGA-BH-A42T TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-BH-A6R9 TCGA-C8-A12L TCGA-C8-A12M 
       10.52        18.64        23.51         5.26        11.93        11.77 
TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12U TCGA-C8-A12V TCGA-C8-A130 TCGA-C8-A1HF 
       11.77        12.66        12.66        12.66         3.16        10.92 
TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HM TCGA-C8-A1HN 
       11.34        11.28         0.16        12.03         2.30         3.25 
TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A26Y TCGA-C8-A278 TCGA-C8-A27B TCGA-C8-A3M8 
        0.30         0.23         0.43         9.50         0.99         0.23 
TCGA-C8-A8HP TCGA-D8-A13Z TCGA-D8-A143 TCGA-D8-A1J9 TCGA-D8-A1JD TCGA-D8-A1JJ 
       13.02        20.88        14.17        17.49        18.15        20.09 
TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JP TCGA-D8-A1X5 TCGA-D8-A1XA TCGA-D8-A1XB 
       20.09        19.40        21.01        18.58        27.58        18.15 
TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XL TCGA-D8-A1XQ TCGA-D8-A1XT TCGA-D8-A1XU 
       21.83        14.50        19.92        16.41         6.35        12.99 
TCGA-D8-A1XV TCGA-D8-A1XW TCGA-D8-A1XY TCGA-D8-A1Y0 TCGA-D8-A1Y2 TCGA-D8-A27H 
       15.16        12.66        16.54        15.52        14.24        13.05 
TCGA-D8-A27N TCGA-D8-A27R TCGA-D8-A73X TCGA-E2-A109 TCGA-E2-A10B TCGA-E2-A14N 
        4.80        10.09        12.10        46.59        37.51        47.15 
TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14R TCGA-E2-A14V TCGA-E2-A14Z TCGA-E2-A150 
       44.68        40.96        38.60        34.26        18.51        25.41 
TCGA-E2-A154 TCGA-E2-A158 TCGA-E2-A159 TCGA-E2-A15A TCGA-E2-A15E TCGA-E2-A15G 
       19.43        14.79        25.05        23.34        20.71        18.21 
TCGA-E2-A1IE TCGA-E2-A1IH TCGA-E2-A1II TCGA-E2-A1IO TCGA-E2-A1L7 TCGA-E2-A1LA 
       38.30        33.73        33.70        20.98        27.42        24.59 
TCGA-E2-A1LG TCGA-E2-A1LI TCGA-E2-A1LL TCGA-E2-A573 TCGA-E2-A574 TCGA-E2-A9RU 
       18.87       102.61        43.04        34.92        26.56        12.85 
TCGA-E9-A1N8 TCGA-E9-A1NF TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RG TCGA-E9-A1RH 
       12.00        35.24        32.09        40.24        21.27        34.59 
TCGA-E9-A226 TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A244 TCGA-E9-A54Y TCGA-E9-A5FL 
       34.13        41.03        12.89         0.69        23.84         0.79 
TCGA-E9-A5UP TCGA-EW-A1J6 TCGA-EW-A1OW TCGA-EW-A1OZ TCGA-EW-A1P4 TCGA-EW-A1P5 
       14.40        28.77        22.82        40.41        29.82        23.11 
TCGA-EW-A1P8 TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A1PH TCGA-EW-A2FS TCGA-EW-A3U0 
        7.86        19.99         6.15        19.96        52.73        17.49 
TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2DB TCGA-GM-A2DD TCGA-GM-A2DF TCGA-GM-A2DH 
        7.40       109.87        79.10        75.02        70.85        72.10 
TCGA-GM-A3XL TCGA-HN-A2NL TCGA-LL-A5YM TCGA-LL-A5YP TCGA-LL-A6FR TCGA-LL-A73Y 
       69.30         2.60        15.32        14.79        16.08        15.68 
TCGA-LL-A8F5 TCGA-OL-A5RW TCGA-OL-A66P TCGA-OL-A6VO TCGA-PE-A5DD TCGA-PE-A5DE 
       14.73        36.36        14.07        28.21        64.21        86.96 
TCGA-PL-A8LZ TCGA-S3-A6ZF TCGA-S3-A6ZH TCGA-S3-AA0Z TCGA-S3-AA10 TCGA-UU-A93S 
        9.93        16.50        16.93        16.80        15.39         3.81 
TCGA-WT-AB41 
       52.96 

$`AMP PEAK  5(3Q26.32) WILD-TYPE`
TCGA-3C-AALJ TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT0 TCGA-5L-AAT1 TCGA-5T-A9QA 
       42.81        40.14        11.44        48.56        48.36         9.96 
TCGA-A1-A0SB TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SJ 
        8.52        14.37        43.43        48.10        14.27        13.68 
TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04Q 
       31.79         7.96        39.32        18.21       104.81        78.41 
TCGA-A2-A04R TCGA-A2-A04U TCGA-A2-A04V TCGA-A2-A04W TCGA-A2-A04X TCGA-A2-A04Y 
      121.94        87.25        63.12       101.98        55.43        36.13 
TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CQ TCGA-A2-A0CR 
      136.73        99.12       114.81        92.48        88.60       107.93 
TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CW TCGA-A2-A0D1 TCGA-A2-A0D3 TCGA-A2-A0D4 
       75.25         5.19       107.93        34.55        61.58        25.22 
TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0EQ TCGA-A2-A0ER 
      101.72       134.40        80.28       107.61        79.76        74.40 
TCGA-A2-A0ES TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0ST 
       72.00        35.05        34.29        61.94        24.72        99.19 
TCGA-A2-A0SU TCGA-A2-A0SW TCGA-A2-A0SY TCGA-A2-A0T0 TCGA-A2-A0T4 TCGA-A2-A0T5 
       54.64        44.88        44.28        17.52        20.52        17.46 
TCGA-A2-A0T6 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YF TCGA-A2-A0YH TCGA-A2-A0YI 
       18.90        32.55        25.28        50.47        21.67        49.48 
TCGA-A2-A0YJ TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A1FV TCGA-A2-A1FX TCGA-A2-A1G0 
       18.61        19.33        48.46        23.47        60.72        20.25 
TCGA-A2-A1G4 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25A TCGA-A2-A25C TCGA-A2-A25E 
       19.56        16.47        52.47       107.70        17.19       105.34 
TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW 
       10.59        20.88        39.65        29.98        32.75        49.48 
TCGA-A2-A3XX TCGA-A2-A3XZ TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4RY 
       47.31        50.37        38.37         7.30        24.39        21.30 
TCGA-A2-A4S0 TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0D9 
       23.21        21.14        21.90        34.29        35.47        37.45 
TCGA-A7-A0DC TCGA-A7-A13E TCGA-A7-A13G TCGA-A7-A13H TCGA-A7-A26E TCGA-A7-A26F 
       29.79        20.19        23.61        29.56        31.36        24.26 
TCGA-A7-A26I TCGA-A7-A26J TCGA-A7-A2KD TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J0 
       21.73        20.61        22.32        11.34        10.59        10.29 
TCGA-A7-A3J1 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A426 TCGA-A7-A4SA TCGA-A7-A4SB 
       11.28        13.41        14.70        11.97        14.93        13.74 
TCGA-A7-A4SF TCGA-A7-A5ZW TCGA-A7-A5ZX TCGA-A7-A6VW TCGA-A7-A6VY TCGA-A8-A06P 
       17.92        10.72        11.05         9.37         8.75        13.02 
TCGA-A8-A06T TCGA-A8-A06X TCGA-A8-A06Y TCGA-A8-A076 TCGA-A8-A079 TCGA-A8-A07B 
       53.06        31.00        26.01        53.98         9.01        43.00 
TCGA-A8-A07E TCGA-A8-A07F TCGA-A8-A07I TCGA-A8-A07P TCGA-A8-A07S TCGA-A8-A07Z 
       19.99        18.97        14.01        10.98         7.99        45.07 
TCGA-A8-A082 TCGA-A8-A084 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08G TCGA-A8-A08O 
       18.05        15.06        13.02         0.99        19.96        31.00 
TCGA-A8-A08S TCGA-A8-A08T TCGA-A8-A08Z TCGA-A8-A095 TCGA-A8-A097 TCGA-A8-A099 
       33.01       112.08        40.01        41.98        12.00         9.99 
TCGA-A8-A09D TCGA-A8-A09I TCGA-A8-A09N TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09W 
       50.04        45.07         1.02        19.04        15.02         0.99 
TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A7 
       14.01        12.00        19.04        13.02        21.04         0.99 
TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23E TCGA-AC-A23G 
       27.02        17.03        38.04         0.95         2.37        10.85 
TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FF TCGA-AC-A2FG 
        1.48        38.53        99.35        40.57        55.43        36.99 
TCGA-AC-A2FK TCGA-AC-A2FO TCGA-AC-A2QI TCGA-AC-A3BB TCGA-AC-A3HN TCGA-AC-A3QP 
       38.79        50.70         0.92        32.45        16.31        22.19 
TCGA-AC-A3TN TCGA-AC-A3W5 TCGA-AC-A3W6 TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A5XS 
       14.99        16.57        19.79        23.24        24.79         1.55 
TCGA-AC-A62V TCGA-AC-A62Y TCGA-AC-A6IV TCGA-AC-A6IX TCGA-AC-A6NO TCGA-AC-A7VB 
       11.44        17.42        18.67        12.26         1.68         8.22 
TCGA-AC-A7VC TCGA-AC-A8OP TCGA-AC-A8OR TCGA-AC-A8OS TCGA-AN-A03X TCGA-AN-A046 
        0.03        20.19         1.32         2.30         0.33         0.33 
TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A0AK TCGA-AN-A0AR TCGA-AN-A0AT TCGA-AN-A0FD 
        2.96         1.78         7.36         0.33         0.33         6.44 
TCGA-AN-A0FK TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FY 
        7.00         7.17         6.28         7.04         0.33         0.33 
TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03M 
        0.30         0.33         0.33         5.33         5.59        61.35 
TCGA-AO-A03N TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V 
       66.77        95.70        68.75        47.87        58.95        29.13 
TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J5 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA 
       32.78        21.40        26.04        22.36        53.03        21.53 
TCGA-AO-A0JB TCGA-AO-A0JC TCGA-AO-A0JD TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JG 
       50.70        50.86        72.00        76.77        21.37        26.24 
TCGA-AO-A0JI TCGA-AO-A0JJ TCGA-AO-A0JL TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A12A 
       50.24        62.04        55.33        99.25       108.72        90.58 
TCGA-AO-A12B TCGA-AO-A12E TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO 
       98.27        57.30        48.36        41.62        28.37        14.73 
TCGA-AO-A1KP TCGA-AO-A1KS TCGA-AO-A1KT TCGA-AQ-A04J TCGA-AQ-A0Y5 TCGA-AQ-A1H2 
       82.62         0.53        17.79        26.93         5.65        15.62 
TCGA-AQ-A1H3 TCGA-AQ-A7U7 TCGA-AR-A0TQ TCGA-AR-A0TR TCGA-AR-A0TT TCGA-AR-A0TV 
       32.52        19.20        73.64         5.26        86.66        42.35 
TCGA-AR-A0TW TCGA-AR-A0TX TCGA-AR-A0TY TCGA-AR-A0TZ TCGA-AR-A0U0 TCGA-AR-A0U2 
       98.93        64.83        55.86       107.24        65.36        83.87 
TCGA-AR-A0U3 TCGA-AR-A1AH TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AM TCGA-AR-A1AP 
      114.02        75.55        51.25        48.82        76.11        39.98 
TCGA-AR-A1AQ TCGA-AR-A1AR TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A1AX 
       43.07        17.23        76.21        61.28        63.62        62.14 
TCGA-AR-A1AY TCGA-AR-A24L TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24R 
       33.73        94.22        78.51        84.20         2.76        87.22 
TCGA-AR-A24S TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A24Z 
       97.84        76.01        53.36        50.96        83.77        79.00 
TCGA-AR-A250 TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ 
       89.00        73.18        72.76       143.21        20.25        62.86 
TCGA-AR-A2LK TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A5QM 
       54.21        52.11        38.17        39.39        40.54        54.74 
TCGA-AR-A5QN TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I5 TCGA-B6-A0I9 TCGA-B6-A0IB 
       16.04        10.59        77.62       149.59        12.13       129.57 
TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0IM TCGA-B6-A0IN 
       50.70        65.72       146.50       112.37       126.12        84.59 
TCGA-B6-A0IO TCGA-B6-A0IP TCGA-B6-A0RE TCGA-B6-A0RI TCGA-B6-A0RL TCGA-B6-A0RM 
      110.14       110.93       211.56       234.28        81.17        78.02 
TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RV TCGA-B6-A0WT 
      172.96       162.05       140.48        89.46       157.41       188.68 
TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X4 TCGA-B6-A0X5 
       18.35        21.47       129.57       129.70        28.27        68.94 
TCGA-B6-A0X7 TCGA-B6-A1KI TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A402 TCGA-B6-A40B 
       58.88        73.51       139.17       170.17        74.99       103.63 
TCGA-B6-A40C TCGA-BH-A0AV TCGA-BH-A0AY TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B2 
       71.15        59.84        25.55        28.50        46.95        40.83 
TCGA-BH-A0B5 TCGA-BH-A0B7 TCGA-BH-A0B9 TCGA-BH-A0BA TCGA-BH-A0BD TCGA-BH-A0BF 
       48.36        56.98        51.68        37.22        18.21        25.71 
TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BP TCGA-BH-A0BQ 
       24.85        21.70        61.68        35.67        48.69        27.19 
TCGA-BH-A0BS TCGA-BH-A0BV TCGA-BH-A0BW TCGA-BH-A0BZ TCGA-BH-A0C1 TCGA-BH-A0C3 
       53.95        49.94        11.67        49.05        44.02        48.13 
TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DO 
       42.90        45.83        31.17        23.44        38.01        17.26 
TCGA-BH-A0DP TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E0 
       15.65        38.47        67.86        47.41        16.27         4.41 
TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E7 TCGA-BH-A0EA TCGA-BH-A0EE TCGA-BH-A0EI 
       15.68        14.30        44.81        32.58        31.00        24.43 
TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H9 
       10.78        15.16        37.78        35.51        24.56        41.00 
TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HK TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ 
       52.96        26.50         5.85         2.50        13.61        36.85 
TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 
       51.32        27.25         5.59        23.93        24.95        42.35 
TCGA-BH-A0W7 TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18K 
       44.81         8.81         2.01         7.23        20.12        90.84 
TCGA-BH-A18L TCGA-BH-A18M TCGA-BH-A18P TCGA-BH-A18R TCGA-BH-A18S TCGA-BH-A1EN 
       26.66        72.56        30.28        37.55        66.05        69.93 
TCGA-BH-A1EO TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EX TCGA-BH-A1EY 
       91.99       113.82        82.85        42.28        49.58        17.69 
TCGA-BH-A1F2 TCGA-BH-A1F5 TCGA-BH-A1F6 TCGA-BH-A1F8 TCGA-BH-A1FB TCGA-BH-A1FD 
       31.53        89.16        97.48        24.66       120.62        33.17 
TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FM 
       74.73       122.89        36.92        63.35        55.00        45.63 
TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A204 TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 
      144.59        72.07        83.31        10.65         6.44        20.12 
TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A6R8 TCGA-BH-A8FY TCGA-BH-A8FZ TCGA-BH-A8G0 
      109.28         8.94         9.63         9.70        18.87        21.76 
TCGA-BH-AB28 TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A12Z 
        9.44        11.77        12.66        12.66        12.66         0.39 
TCGA-C8-A131 TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A135 TCGA-C8-A137 TCGA-C8-A138 
        2.24         1.87         1.12         1.05         4.11         4.08 
TCGA-C8-A1HE TCGA-C8-A1HL TCGA-C8-A26X TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A274 
       12.33        10.42         0.36         8.28         9.67         9.53 
TCGA-C8-A275 TCGA-C8-A27A TCGA-C8-A3M7 TCGA-C8-A8HQ TCGA-C8-A8HR TCGA-C8-A9FZ 
        0.03        12.20         0.03        12.49        13.41        19.46 
TCGA-D8-A13Y TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A145 TCGA-D8-A146 
       11.90        13.25        20.58        13.97        13.48        21.14 
TCGA-D8-A147 TCGA-D8-A1J8 TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JE 
       19.20        14.17        16.50        18.71        15.78        18.90 
TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JH TCGA-D8-A1JI TCGA-D8-A1JK TCGA-D8-A1JN 
       12.03        12.03        14.01        18.97        20.12        20.38 
TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X6 TCGA-D8-A1X7 TCGA-D8-A1X8 
       12.20        13.32        14.70        17.79        16.73        25.74 
TCGA-D8-A1X9 TCGA-D8-A1XC TCGA-D8-A1XD TCGA-D8-A1XF TCGA-D8-A1XG TCGA-D8-A1XM 
       23.90        12.39        17.16        15.22        14.73        17.69 
TCGA-D8-A1XO TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XZ TCGA-D8-A1Y1 TCGA-D8-A1Y3 
       15.55        15.85        16.31        15.32         9.93        14.14 
TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27G TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27L 
       17.42        16.04        13.45        14.43         9.44        16.41 
TCGA-D8-A27M TCGA-D8-A27P TCGA-D8-A27T TCGA-D8-A27V TCGA-D8-A27W TCGA-D8-A3Z5 
       13.48         0.76        13.08        12.53        12.26        33.37 
TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-D8-A73U TCGA-D8-A73W TCGA-E2-A105 TCGA-E2-A107 
       18.51        21.67        16.18         8.02        43.00        34.42 
TCGA-E2-A108 TCGA-E2-A10A TCGA-E2-A10C TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14Q 
       27.52        40.41        40.11        28.44        28.87        38.24 
TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14W TCGA-E2-A14X TCGA-E2-A14Y 
       33.17        33.30        43.33        32.02        31.96        28.60 
TCGA-E2-A152 TCGA-E2-A153 TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A15C TCGA-E2-A15D 
       27.12        23.24        21.04        23.87        22.82        17.29 
TCGA-E2-A15F TCGA-E2-A15H TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L 
       21.63        12.92        17.42        19.40         9.04        20.58 
TCGA-E2-A15M TCGA-E2-A15O TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A15T 
       11.05        13.02        19.56        17.06        14.07        14.99 
TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 
       60.53        53.62        53.03        33.01        32.35        28.50 
TCGA-E2-A1BC TCGA-E2-A1BD TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1IJ TCGA-E2-A1IK 
       16.47        17.10        37.41        32.78        28.44        22.65 
TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L8 TCGA-E2-A1L9 
        3.88        22.19        11.08        54.18        39.62        19.66 
TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LH TCGA-E2-A1LK TCGA-E2-A2P5 TCGA-E2-A2P6 
       40.47        28.90       106.75         8.75        16.93         5.52 
TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A576 TCGA-E9-A1N3 TCGA-E9-A1N4 
       15.72         8.28        30.61        34.29        34.82        32.88 
TCGA-E9-A1N5 TCGA-E9-A1N6 TCGA-E9-A1N9 TCGA-E9-A1NA TCGA-E9-A1NC TCGA-E9-A1ND 
       36.82        13.48        13.12        36.56        39.55        12.59 
TCGA-E9-A1NE TCGA-E9-A1NG TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 
       35.77        25.84         9.86        11.90        28.27        34.95 
TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RA 
        2.56         6.12         3.02         2.76        21.21        32.09 
TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RI TCGA-E9-A227 TCGA-E9-A228 
        1.12        34.65         6.58        35.64        32.05        12.53 
TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A22G TCGA-E9-A22H TCGA-E9-A243 
       13.32        39.09        22.75        23.51        20.71        17.06 
TCGA-E9-A247 TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A295 TCGA-E9-A2JS 
       27.22         1.94         7.13        24.56         0.72        29.72 
TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3QA TCGA-E9-A3X8 TCGA-E9-A54X 
        0.76        26.07        18.41        30.18        15.72        12.33 
TCGA-E9-A5FK TCGA-E9-A5UO TCGA-E9-A6HE TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY 
       14.70        13.81        15.39        12.20        39.72         8.48 
TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J5 TCGA-EW-A1OV 
       18.21        18.90        13.25        16.57        15.68        25.94 
TCGA-EW-A1OX TCGA-EW-A1OY TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P3 TCGA-EW-A1P6 
       29.95        29.85        41.13        39.78        52.96        18.48 
TCGA-EW-A1P7 TCGA-EW-A1PA TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PF TCGA-EW-A1PG 
       30.08        18.90        13.94        10.52        14.43        34.55 
TCGA-EW-A2FR TCGA-EW-A2FV TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A423 TCGA-EW-A424 
       55.00        25.91        22.09        34.03        10.16        23.51 
TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DC TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL 
       59.57       216.76        83.34        85.15        86.96       115.69 
TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A2DO TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG 
      106.06       101.62        85.35       110.50        38.20        43.73 
TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2OB TCGA-JL-A3YW 
       66.38        72.03        13.55        18.12        62.43        11.84 
TCGA-JL-A3YX TCGA-LD-A66U TCGA-LD-A74U TCGA-LD-A7W5 TCGA-LD-A7W6 TCGA-LD-A9QF 
       11.57        21.24        13.22         7.10        13.28        10.62 
TCGA-LL-A440 TCGA-LL-A441 TCGA-LL-A442 TCGA-LL-A50Y TCGA-LL-A5YL TCGA-LL-A5YN 
       24.95        11.44        10.95        25.05        17.06        14.70 
TCGA-LL-A5YO TCGA-LL-A6FP TCGA-LL-A6FQ TCGA-LL-A73Z TCGA-LL-A740 TCGA-LL-A7SZ 
       14.47        22.26         2.63         7.46        14.50        14.70 
TCGA-LL-A7T0 TCGA-LL-A9Q3 TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D6 
       12.36        14.07        27.91        22.39         2.10        36.30 
TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RU TCGA-OL-A5RV TCGA-OL-A5RX 
       58.52        31.99        58.62        40.08        34.92        28.87 
TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J 
       24.72        22.32        20.38        26.70        23.47        65.62 
TCGA-OL-A66K TCGA-OL-A66L TCGA-OL-A66N TCGA-OL-A66O TCGA-OL-A6VQ TCGA-OL-A6VR 
       41.92        42.77        26.04        17.36        19.73        40.11 
TCGA-OL-A97C TCGA-PE-A5DC TCGA-PL-A8LX TCGA-PL-A8LY TCGA-S3-A6ZG TCGA-S3-AA11 
        8.91        47.01         0.16         0.26        13.12        13.84 
TCGA-S3-AA12 TCGA-S3-AA14 TCGA-S3-AA15 TCGA-S3-AA17 TCGA-UL-AAZ6 TCGA-W8-A86G 
       15.35        14.96        13.84        13.94        17.03        11.41 
TCGA-WT-AB44 TCGA-XX-A899 TCGA-XX-A89A TCGA-Z7-A8R5 TCGA-Z7-A8R6 
       29.03        15.35        16.04       108.07       107.05 

  AMP PEAK  5(3Q26.32) MUTATED AMP PEAK  5(3Q26.32) WILD-TYPE 
                          0.16                           0.03 
  AMP PEAK  5(3Q26.32) MUTATED AMP PEAK  5(3Q26.32) WILD-TYPE 
                        220.90                         234.28 
  AMP PEAK  5(3Q26.32) MUTATED AMP PEAK  5(3Q26.32) WILD-TYPE 
                         23.77                          24.72 
[1] "0.2 - 220.9 (23.8)" "0.0 - 234.3 (24.7)"
[1] "hr=" "1"  
D5V2, continuous
                                vv
clus                             STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  AMP PEAK  5(3Q26.32) MUTATED        19       21        1        1       133
  AMP PEAK  5(3Q26.32) WILD-TYPE      70       60        7        2       220
                                vv
clus                             STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  AMP PEAK  5(3Q26.32) MUTATED          74         0         44         13
  AMP PEAK  5(3Q26.32) WILD-TYPE       171         2        106         16
                                vv
clus                             STAGE IIIC STAGE IV STAGE TIS STAGE X
  AMP PEAK  5(3Q26.32) MUTATED           18        8         0       4
  AMP PEAK  5(3Q26.32) WILD-TYPE         45       12         1       9
D5V3, multiclass
            clus
vv           AMP PEAK  5(3Q26.32) MUTATED AMP PEAK  5(3Q26.32) WILD-TYPE
  STAGE I                              19                             70
  STAGE IA                             21                             60
  STAGE IB                              1                              7
  STAGE II                              1                              2
  STAGE IIA                           133                            220
  STAGE IIB                            74                            171
  STAGE III                             0                              2
  STAGE IIIA                           44                            106
  STAGE IIIB                           13                             16
  STAGE IIIC                           18                             45
  STAGE IV                              8                             12
  STAGE TIS                             0                              1
  STAGE X                               4                              9
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              T1  T2  T3  T4
  AMP PEAK  5(3Q26.32) MUTATED    65 224  30  17
  AMP PEAK  5(3Q26.32) WILD-TYPE 207 392 100  23
D5V4, multiclass
    clus
vv   AMP PEAK  5(3Q26.32) MUTATED AMP PEAK  5(3Q26.32) WILD-TYPE
  T1                           65                            207
  T2                          224                            392
  T3                           30                            100
  T4                           17                             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              N0  N1  N2  N3
  AMP PEAK  5(3Q26.32) MUTATED   167 100  42  22
  AMP PEAK  5(3Q26.32) WILD-TYPE 334 250  75  53
D5V5, multiclass
    clus
vv   AMP PEAK  5(3Q26.32) MUTATED AMP PEAK  5(3Q26.32) WILD-TYPE
  N0                          167                            334
  N1                          100                            250
  N2                           42                             75
  N3                           22                             53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D5V6, binary
                                cls
clus                               0   1
  AMP PEAK  5(3Q26.32) MUTATED   295   8
  AMP PEAK  5(3Q26.32) WILD-TYPE 584  13
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  5(3Q26.32) MUTATED    295    8
  AMP PEAK  5(3Q26.32) WILD-TYPE  584   13
   clus
vv  AMP PEAK  5(3Q26.32) MUTATED AMP PEAK  5(3Q26.32) WILD-TYPE
  0                          295                            584
  1                            8                             13
[1] 2 2
[1] FALSE
D5V7, binary
                                cls
clus                               0   1
  AMP PEAK  5(3Q26.32) MUTATED   333   4
  AMP PEAK  5(3Q26.32) WILD-TYPE 718   7
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  5(3Q26.32) MUTATED    333    4
  AMP PEAK  5(3Q26.32) WILD-TYPE  718    7
        clus
vv       AMP PEAK  5(3Q26.32) MUTATED AMP PEAK  5(3Q26.32) WILD-TYPE
  FEMALE                          333                            718
  MALE                              4                              7
[1] 2 2
[1] FALSE
                                vv
clus                             INFILTRATING CARCINOMA NOS
  AMP PEAK  5(3Q26.32) MUTATED                            1
  AMP PEAK  5(3Q26.32) WILD-TYPE                          0
                                vv
clus                             INFILTRATING DUCTAL CARCINOMA
  AMP PEAK  5(3Q26.32) MUTATED                             291
  AMP PEAK  5(3Q26.32) WILD-TYPE                           472
                                vv
clus                             INFILTRATING LOBULAR CARCINOMA
  AMP PEAK  5(3Q26.32) MUTATED                               15
  AMP PEAK  5(3Q26.32) WILD-TYPE                            177
                                vv
clus                             MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  AMP PEAK  5(3Q26.32) MUTATED                     5                     3
  AMP PEAK  5(3Q26.32) WILD-TYPE                   1                     1
                                vv
clus                             MIXED HISTOLOGY (PLEASE SPECIFY)
  AMP PEAK  5(3Q26.32) MUTATED                                  6
  AMP PEAK  5(3Q26.32) WILD-TYPE                               24
                                vv
clus                             MUCINOUS CARCINOMA OTHER  SPECIFY
  AMP PEAK  5(3Q26.32) MUTATED                    1             14
  AMP PEAK  5(3Q26.32) WILD-TYPE                 16             34
D5V8, multiclass
                                  clus
vv                                 AMP PEAK  5(3Q26.32) MUTATED
  INFILTRATING CARCINOMA NOS                                  1
  INFILTRATING DUCTAL CARCINOMA                             291
  INFILTRATING LOBULAR CARCINOMA                             15
  MEDULLARY CARCINOMA                                         5
  METAPLASTIC CARCINOMA                                       3
  MIXED HISTOLOGY (PLEASE SPECIFY)                            6
  MUCINOUS CARCINOMA                                          1
  OTHER  SPECIFY                                             14
                                  clus
vv                                 AMP PEAK  5(3Q26.32) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                    0
  INFILTRATING DUCTAL CARCINOMA                               472
  INFILTRATING LOBULAR CARCINOMA                              177
  MEDULLARY CARCINOMA                                           1
  METAPLASTIC CARCINOMA                                         1
  MIXED HISTOLOGY (PLEASE SPECIFY)                             24
  MUCINOUS CARCINOMA                                           16
  OTHER  SPECIFY                                               34
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D5V9, binary
                                cls
clus                               0   1
  AMP PEAK  5(3Q26.32) MUTATED   103 234
  AMP PEAK  5(3Q26.32) WILD-TYPE 185 540
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  5(3Q26.32) MUTATED    103  234
  AMP PEAK  5(3Q26.32) WILD-TYPE  185  540
     clus
vv    AMP PEAK  5(3Q26.32) MUTATED AMP PEAK  5(3Q26.32) WILD-TYPE
  NO                           103                            185
  YES                          234                            540
[1] 2 2
[1] FALSE
D5V10, continuous
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK  5(3Q26.32) MUTATED                                  1    27
  AMP PEAK  5(3Q26.32) WILD-TYPE                                0    33
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK  5(3Q26.32) MUTATED                          63   206
  AMP PEAK  5(3Q26.32) WILD-TYPE                       107   530
D5V11, multiclass
                                  clus
vv                                 AMP PEAK  5(3Q26.32) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            1
  ASIAN                                                      27
  BLACK OR AFRICAN AMERICAN                                  63
  WHITE                                                     206
                                  clus
vv                                 AMP PEAK  5(3Q26.32) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              0
  ASIAN                                                        33
  BLACK OR AFRICAN AMERICAN                                   107
  WHITE                                                       530
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D5V12, binary
                                cls
clus                               0   1
  AMP PEAK  5(3Q26.32) MUTATED     7 271
  AMP PEAK  5(3Q26.32) WILD-TYPE  31 587
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  5(3Q26.32) MUTATED      7  271
  AMP PEAK  5(3Q26.32) WILD-TYPE   31  587
                        clus
vv                       AMP PEAK  5(3Q26.32) MUTATED
  HISPANIC OR LATINO                                7
  NOT HISPANIC OR LATINO                          271
                        clus
vv                       AMP PEAK  5(3Q26.32) WILD-TYPE
  HISPANIC OR LATINO                                 31
  NOT HISPANIC OR LATINO                            587
[1] 2 2
[1] FALSE

Clustering(6) Variable = AMP PEAK  6(4Q13.3) MUTATION ANALYSIS
D6V1, survival
                               sevent
clus2                             0   1
  AMP PEAK  6(4Q13.3) MUTATED   133  24
  AMP PEAK  6(4Q13.3) WILD-TYPE 783 104
  AMP PEAK  6(4Q13.3) MUTATED AMP PEAK  6(4Q13.3) WILD-TYPE 
                          157                           887 
  AMP PEAK  6(4Q13.3) MUTATED AMP PEAK  6(4Q13.3) WILD-TYPE 
                           24                           104 
$`AMP PEAK  6(4Q13.3) MUTATED`
TCGA-3C-AAAU TCGA-A1-A0SJ TCGA-A1-A0SO TCGA-A2-A04P TCGA-A2-A04T TCGA-A2-A04W 
      129.14        13.68        28.01        18.02        73.84       101.98 
TCGA-A2-A0CL TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0EQ TCGA-A2-A0ET TCGA-A2-A0T1 
       99.12        75.25         5.19        79.76        35.05        17.13 
TCGA-A2-A0T3 TCGA-A2-A0YT TCGA-A2-A1FW TCGA-A2-A1G0 TCGA-A2-A3XT TCGA-A2-A3Y0 
       49.84        23.77        17.36        20.25        83.01        38.37 
TCGA-A2-A4S1 TCGA-A7-A4SB TCGA-A7-A6VV TCGA-A8-A06O TCGA-A8-A06Q TCGA-A8-A06U 
       26.96        13.74        10.29        13.02         1.02        29.03 
TCGA-A8-A06X TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A079 TCGA-A8-A07E TCGA-A8-A07G 
       31.00         1.02        17.03         9.01        19.99        18.97 
TCGA-A8-A07R TCGA-A8-A07W TCGA-A8-A08G TCGA-A8-A08R TCGA-A8-A08S TCGA-A8-A08T 
        8.98         9.99        19.96         0.99        33.01       112.08 
TCGA-A8-A091 TCGA-A8-A097 TCGA-A8-A09A TCGA-A8-A09M TCGA-A8-A0A9 TCGA-AC-A2QJ 
       33.01        12.00         9.99        33.07        27.02         2.27 
TCGA-AC-A3W5 TCGA-AC-A62V TCGA-AN-A04C TCGA-AN-A04D TCGA-AN-A0FY TCGA-AN-A0XU 
       16.57        11.44         1.78         1.71         0.33         0.33 
TCGA-AO-A03O TCGA-AO-A03V TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J4 TCGA-AO-A0JD 
       81.63        29.13        32.78        21.40        52.18        72.00 
TCGA-AO-A0JL TCGA-AO-A0JM TCGA-AO-A12D TCGA-AQ-A04L TCGA-AQ-A54O TCGA-AR-A0TS 
       55.33        71.80        64.04       130.09        32.91        74.79 
TCGA-AR-A0TW TCGA-AR-A0U4 TCGA-AR-A1AN TCGA-AR-A1AR TCGA-AR-A24H TCGA-AR-A250 
       98.93        85.97        43.73        17.23       160.90        89.00 
TCGA-AR-A2LL TCGA-AR-A2LR TCGA-B6-A0RG TCGA-B6-A0RS TCGA-BH-A0AU TCGA-BH-A0AW 
       66.15        20.38        68.45       100.70        24.53        20.45 
TCGA-BH-A0AY TCGA-BH-A0B6 TCGA-BH-A0B7 TCGA-BH-A0BG TCGA-BH-A0BW TCGA-BH-A0C0 
       25.55        56.94        56.98        24.85        11.67        41.75 
TCGA-BH-A0H7 TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A18J TCGA-BH-A18L TCGA-BH-A18N 
       23.08        27.25        50.79        20.12        26.66        37.74 
TCGA-BH-A18U TCGA-BH-A1EW TCGA-BH-A1EX TCGA-BH-A1F0 TCGA-BH-A1FC TCGA-BH-A1FM 
       51.39        55.69        49.58        25.81       114.15        45.63 
TCGA-BH-A1FU TCGA-BH-A203 TCGA-BH-A208 TCGA-BH-A5J0 TCGA-C8-A12O TCGA-C8-A12W 
       72.07        38.60        57.83        23.51        12.66        12.66 
TCGA-C8-A1HK TCGA-C8-A1HN TCGA-C8-A26W TCGA-C8-A26Y TCGA-D8-A1JA TCGA-D8-A1JD 
       12.03         3.25         0.23         0.43        16.50        18.15 
TCGA-D8-A1JG TCGA-D8-A1JH TCGA-D8-A1JP TCGA-D8-A1JT TCGA-D8-A1XA TCGA-D8-A1XF 
       12.03        14.01        21.01        13.32        27.58        15.22 
TCGA-D8-A1XK TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A27M TCGA-D8-A27R TCGA-D8-A27W 
       14.50        15.32        15.52        13.48        10.09        12.26 
TCGA-E2-A109 TCGA-E2-A14N TCGA-E2-A14P TCGA-E2-A14R TCGA-E2-A14S TCGA-E2-A152 
       46.59        47.15        40.96        38.60        33.17        27.12 
TCGA-E2-A15A TCGA-E2-A15E TCGA-E2-A15O TCGA-E2-A1IO TCGA-E2-A1L9 TCGA-E2-A1LA 
       23.34        20.71        13.02        20.98        19.66        24.59 
TCGA-E2-A56Z TCGA-E9-A1R6 TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RE TCGA-E9-A22D 
        8.28         2.76        32.09        40.24        34.65        41.03 
TCGA-E9-A22G TCGA-E9-A243 TCGA-E9-A244 TCGA-E9-A247 TCGA-E9-A2JS TCGA-E9-A5UP 
       23.51        17.06         0.69        27.22        29.72        14.40 
TCGA-EW-A1OY TCGA-EW-A1P4 TCGA-EW-A1PB TCGA-EW-A1PD TCGA-EW-A1PH TCGA-EW-A2FS 
       29.85        29.82        19.99        13.94        19.96        52.73 
TCGA-EW-A2FV TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2DB TCGA-GM-A2DF TCGA-LL-A5YP 
       25.91         7.40       109.87        79.10        70.85        14.79 
TCGA-LL-A7T0 TCGA-OL-A66I TCGA-OL-A6VO TCGA-S3-A6ZG TCGA-S3-AA10 TCGA-UL-AAZ6 
       12.36        23.47        28.21        13.12        15.39        17.03 
TCGA-Z7-A8R5 
      108.07 

$`AMP PEAK  6(4Q13.3) WILD-TYPE`
TCGA-3C-AALI TCGA-3C-AALJ TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT0 TCGA-5L-AAT1 
      131.67        42.81        40.14        11.44        48.56        48.36 
TCGA-5T-A9QA TCGA-A1-A0SB TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG 
        9.96         8.52        14.37        43.43        48.10        14.27 
TCGA-A1-A0SH TCGA-A1-A0SI TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SP 
       47.24        20.88        31.79         7.96        39.32        19.20 
TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04U TCGA-A2-A04V 
       18.21       104.81        78.41       121.94        87.25        63.12 
TCGA-A2-A04X TCGA-A2-A04Y TCGA-A2-A0CK TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP 
       55.43        36.13       136.73        24.79       114.81        92.48 
TCGA-A2-A0CQ TCGA-A2-A0CR TCGA-A2-A0CS TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0CX 
       88.60       107.93        75.55        98.99       107.93        56.81 
TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0D4 TCGA-A2-A0EM 
       67.33        34.55        33.76        61.58        25.22       101.72 
TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0ER TCGA-A2-A0ES TCGA-A2-A0EU 
      134.40        80.28       107.61        74.40        72.00        34.29 
TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0EY TCGA-A2-A0ST TCGA-A2-A0SU 
       31.82        61.94        24.72        63.29        99.19        54.64 
TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0SX TCGA-A2-A0SY TCGA-A2-A0T0 TCGA-A2-A0T2 
       27.12        44.88        50.43        44.28        17.52         8.38 
TCGA-A2-A0T4 TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD 
       20.52        17.46        18.90        20.75        32.55        25.28 
TCGA-A2-A0YE TCGA-A2-A0YF TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YJ 
       18.21        50.47        21.90        21.67        49.48        18.61 
TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A0YM TCGA-A2-A1FV TCGA-A2-A1FX TCGA-A2-A1FZ 
       19.33        48.46        31.73        23.47        60.72        22.45 
TCGA-A2-A1G1 TCGA-A2-A1G4 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25A TCGA-A2-A25B 
       19.20        19.56        16.47        52.47       107.70        42.44 
TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD 
       17.19        18.15       105.34        10.59        20.88        39.65 
TCGA-A2-A3XS TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX TCGA-A2-A3XY 
       33.93        29.98        32.75        49.48        47.31        34.98 
TCGA-A2-A3XZ TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S2 
       50.37         7.30        24.39        21.30        23.21        21.14 
TCGA-A2-A4S3 TCGA-A7-A0CD TCGA-A7-A0CE TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0CJ 
       21.90        38.30        35.31        34.29        35.47        30.61 
TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A0DC TCGA-A7-A13D TCGA-A7-A13E 
       37.45        35.67        33.11        29.79        31.73        20.19 
TCGA-A7-A13F TCGA-A7-A13G TCGA-A7-A13H TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26G 
       25.15        23.61        29.56        31.36        24.26        23.74 
TCGA-A7-A26H TCGA-A7-A26I TCGA-A7-A26J TCGA-A7-A2KD TCGA-A7-A3IY TCGA-A7-A3IZ 
       23.80        21.73        20.61        22.32        11.34        10.59 
TCGA-A7-A3J0 TCGA-A7-A3J1 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A426 TCGA-A7-A4SA 
       10.29        11.28        13.41        14.70        11.97        14.93 
TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF TCGA-A7-A56D TCGA-A7-A5ZV TCGA-A7-A5ZW 
       14.50        21.17        17.92        14.73        12.10        10.72 
TCGA-A7-A5ZX TCGA-A7-A6VW TCGA-A7-A6VX TCGA-A7-A6VY TCGA-A8-A06P TCGA-A8-A06R 
       11.05         9.37        10.42         8.75        13.02        17.98 
TCGA-A8-A06T TCGA-A8-A06Y TCGA-A8-A076 TCGA-A8-A07B TCGA-A8-A07F TCGA-A8-A07I 
       53.06        26.01        53.98        43.00        18.97        14.01 
TCGA-A8-A07J TCGA-A8-A07L TCGA-A8-A07O TCGA-A8-A07P TCGA-A8-A07S TCGA-A8-A07U 
       12.00        32.05         9.99        10.98         7.99        24.99 
TCGA-A8-A07Z TCGA-A8-A082 TCGA-A8-A084 TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A 
       45.07        18.05        15.06        36.95        13.02         0.99 
TCGA-A8-A08B TCGA-A8-A08C TCGA-A8-A08F TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L 
       38.01        28.96        33.01        12.00        37.05         9.99 
TCGA-A8-A08O TCGA-A8-A08P TCGA-A8-A08X TCGA-A8-A08Z TCGA-A8-A092 TCGA-A8-A093 
       31.00        31.00        43.00        40.01        30.97        17.95 
TCGA-A8-A095 TCGA-A8-A099 TCGA-A8-A09B TCGA-A8-A09C TCGA-A8-A09D TCGA-A8-A09E 
       41.98         9.99        12.00         1.02        50.04        49.05 
TCGA-A8-A09I TCGA-A8-A09K TCGA-A8-A09N TCGA-A8-A09Q TCGA-A8-A09R TCGA-A8-A09T 
       45.07        29.98         1.02        25.02         8.98        19.04 
TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 
       15.02         0.99        14.01        12.00        19.04        13.02 
TCGA-A8-A0A6 TCGA-A8-A0A7 TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23E 
       21.04         0.99        17.03        38.04         0.95         2.37 
TCGA-AC-A23G TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FB 
       10.85         5.72         1.48        38.53        99.35        40.57 
TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A2QH 
       55.43        36.99        38.79        26.04        50.70        33.04 
TCGA-AC-A2QI TCGA-AC-A3BB TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3TN 
        0.92        32.45        16.31        14.83        22.19        14.99 
TCGA-AC-A3W6 TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A5XS TCGA-AC-A62X TCGA-AC-A62Y 
       19.79        23.24        24.79         1.55        13.71        17.42 
TCGA-AC-A6IV TCGA-AC-A6IW TCGA-AC-A6IX TCGA-AC-A6NO TCGA-AC-A7VB TCGA-AC-A7VC 
       18.67        13.58        12.26         1.68         8.22         0.03 
TCGA-AC-A8OP TCGA-AC-A8OQ TCGA-AC-A8OR TCGA-AC-A8OS TCGA-AN-A03X TCGA-AN-A03Y 
       20.19         1.12         1.32         2.30         0.33         0.33 
TCGA-AN-A041 TCGA-AN-A046 TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A0AJ TCGA-AN-A0AK 
        0.23         0.33         0.62         2.96         9.96         7.36 
TCGA-AN-A0AL TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FD 
        6.51         0.16         0.33         0.33         0.33         6.44 
TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FN TCGA-AN-A0FS 
        5.65         7.96         7.00         7.59         7.17         6.28 
TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FX TCGA-AN-A0FZ TCGA-AN-A0XL 
        7.04         0.33         0.36         0.33         0.33         0.33 
TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS TCGA-AN-A0XT 
        0.33        12.33         0.30         0.33         0.33         0.33 
TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03L TCGA-AO-A03M TCGA-AO-A03N TCGA-AO-A03P 
        5.33         5.59        80.28        61.35        66.77        95.70 
TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A0J5 TCGA-AO-A0J6 TCGA-AO-A0J7 
       68.75        47.87        58.95        26.04        37.48        20.32 
TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JC TCGA-AO-A0JE 
       22.36        53.03        21.53        50.70        50.86        76.77 
TCGA-AO-A0JF TCGA-AO-A0JG TCGA-AO-A0JI TCGA-AO-A0JJ TCGA-AO-A124 TCGA-AO-A125 
       21.37        26.24        50.24        62.04       102.58        99.25 
TCGA-AO-A126 TCGA-AO-A128 TCGA-AO-A129 TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12E 
      108.72       106.78       108.03        90.58        98.27        57.30 
TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KQ 
       48.36        41.62        28.37        14.73        82.62        61.87 
TCGA-AO-A1KR TCGA-AO-A1KS TCGA-AO-A1KT TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A0Y5 
       70.39         0.53        17.79        24.79        26.93         5.65 
TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AQ-A54N TCGA-AQ-A7U7 TCGA-AR-A0TP TCGA-AR-A0TQ 
       15.62        32.52         2.56        19.20       111.32        73.64 
TCGA-AR-A0TR TCGA-AR-A0TT TCGA-AR-A0TV TCGA-AR-A0TX TCGA-AR-A0TY TCGA-AR-A0TZ 
        5.26        86.66        42.35        64.83        55.86       107.24 
TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A0U2 TCGA-AR-A0U3 TCGA-AR-A1AH TCGA-AR-A1AI 
       65.36       101.95        83.87       114.02        75.55        61.84 
TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AM TCGA-AR-A1AO TCGA-AR-A1AP 
       52.77        51.25        48.82        76.11        43.56        39.98 
TCGA-AR-A1AQ TCGA-AR-A1AS TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A1AX 
       43.07        37.81        76.21        61.28        63.62        62.14 
TCGA-AR-A1AY TCGA-AR-A24K TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O 
       33.73        50.89        94.22        96.89        78.51        84.20 
TCGA-AR-A24P TCGA-AR-A24Q TCGA-AR-A24R TCGA-AR-A24S TCGA-AR-A24T TCGA-AR-A24U 
        2.76       104.28        87.22        97.84        76.01        53.36 
TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A24Z TCGA-AR-A251 TCGA-AR-A252 
       85.35        50.96        83.77        79.00        78.48        73.18 
TCGA-AR-A254 TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ 
       72.76        58.92        93.83       143.21        20.25        62.86 
TCGA-AR-A2LK TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A5QM 
       54.21        52.11        38.17        39.39        40.54        54.74 
TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 
       16.04        20.45        10.59        77.62       143.38       149.59 
TCGA-B6-A0I9 TCGA-B6-A0IA TCGA-B6-A0IB TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG 
       12.13       220.90       129.57        50.70        65.72       146.50 
TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IO 
      112.37       176.98        18.77       126.12        84.59       110.14 
TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RL 
      110.93       140.88       211.56       189.01       234.28        81.17 
TCGA-B6-A0RM TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RT 
       78.02       172.96       162.05       102.77       140.48        89.46 
TCGA-B6-A0RU TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0WW 
      131.21       157.41        97.48       188.68        79.63        18.35 
TCGA-B6-A0WX TCGA-B6-A0WY TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 
       21.47       113.79       129.57       129.70       186.48        28.27 
TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A1KN 
       68.94        58.88        43.59       101.52        73.51       139.17 
TCGA-B6-A2IU TCGA-B6-A401 TCGA-B6-A402 TCGA-B6-A408 TCGA-B6-A40B TCGA-B6-A40C 
      170.17        85.35        74.99        68.12       103.63        71.15 
TCGA-BH-A0AV TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B2 TCGA-BH-A0B3 TCGA-BH-A0B4 
       59.84        28.50        46.95        40.83        39.55        39.16 
TCGA-BH-A0B5 TCGA-BH-A0B9 TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BF 
       48.36        51.68        37.22        32.02        18.21        25.71 
TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BP TCGA-BH-A0BQ 
       21.70        44.05        61.68        35.67        48.69        27.19 
TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0BZ TCGA-BH-A0C1 
       53.69        53.95        45.57        49.94        49.05        44.02 
TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH 
       48.13        42.90        45.83        31.17        23.44        38.01 
TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DO TCGA-BH-A0DP TCGA-BH-A0DQ 
       22.13        13.91        48.23        17.26        15.65         3.22 
TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E0 
        2.56        38.47        67.86        47.41        16.27         4.41 
TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E6 TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EA 
       15.68        14.30         9.63        44.81        46.19        32.58 
TCGA-BH-A0EB TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H0 
       24.49        31.00        24.43        30.35        10.78        15.16 
TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0HB 
       37.78        35.51        24.56        41.00        52.96        26.50 
TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HU 
       20.38         5.85         2.50        13.61        36.85        12.89 
TCGA-BH-A0HW TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 
       51.32         5.59        23.93        24.95        42.35        44.81 
TCGA-BH-A0WA TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18K TCGA-BH-A18M 
       23.05         8.81         2.01         7.23        90.84        72.56 
TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18R TCGA-BH-A18S TCGA-BH-A18T TCGA-BH-A18V 
       30.28        55.63        37.55        66.05         7.36        51.16 
TCGA-BH-A1EN TCGA-BH-A1EO TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EV 
       69.93        91.99       113.82        82.85        42.28        12.00 
TCGA-BH-A1EY TCGA-BH-A1F2 TCGA-BH-A1F5 TCGA-BH-A1F6 TCGA-BH-A1F8 TCGA-BH-A1FB 
       17.69        31.53        89.16        97.48        24.66       120.62 
TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL 
       33.17        74.73       122.89        36.92        63.35        55.00 
TCGA-BH-A1FN TCGA-BH-A1FR TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A204 TCGA-BH-A209 
       72.07       144.59        28.14        26.14        83.31       130.16 
TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V 
       10.65         6.44        20.12        10.52       109.28         8.94 
TCGA-BH-A5IZ TCGA-BH-A6R8 TCGA-BH-A6R9 TCGA-BH-A8FY TCGA-BH-A8FZ TCGA-BH-A8G0 
       18.64         9.63         5.26         9.70        18.87        21.76 
TCGA-BH-AB28 TCGA-C8-A12L TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12P TCGA-C8-A12Q 
        9.44        11.93        11.77        11.77        11.77        12.66 
TCGA-C8-A12U TCGA-C8-A12V TCGA-C8-A12X TCGA-C8-A12Z TCGA-C8-A130 TCGA-C8-A131 
       12.66        12.66        12.66         0.39         3.16         2.24 
TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A135 TCGA-C8-A137 TCGA-C8-A138 TCGA-C8-A1HE 
        1.87         1.12         1.05         4.11         4.08        12.33 
TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HJ TCGA-C8-A1HL TCGA-C8-A1HM 
       10.92        11.34        11.28         0.16        10.42         2.30 
TCGA-C8-A26V TCGA-C8-A26X TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A275 
        0.30         0.36         8.28         9.67         9.53         0.03 
TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-C8-A8HP 
        9.50        12.20         0.99         0.03         0.23        13.02 
TCGA-C8-A8HQ TCGA-C8-A8HR TCGA-C8-A9FZ TCGA-D8-A13Y TCGA-D8-A13Z TCGA-D8-A140 
       12.49        13.41        19.46        11.90        20.88        13.25 
TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A145 TCGA-D8-A146 TCGA-D8-A147 
       20.58        13.97        14.17        13.48        21.14        19.20 
TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JE TCGA-D8-A1JF 
       14.17        17.49        18.71        15.78        18.90        12.03 
TCGA-D8-A1JI TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JN 
       18.97        20.09        20.12        20.09        19.40        20.38 
TCGA-D8-A1JS TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X7 TCGA-D8-A1X8 
       12.20        14.70        18.58        17.79        16.73        25.74 
TCGA-D8-A1X9 TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XD TCGA-D8-A1XG TCGA-D8-A1XJ 
       23.90        18.15        12.39        17.16        14.73        21.83 
TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XQ TCGA-D8-A1XR TCGA-D8-A1XS 
       19.92        17.69        15.55        16.41        15.85        16.31 
TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1XV TCGA-D8-A1XW TCGA-D8-A1XY TCGA-D8-A1Y1 
        6.35        12.99        15.16        12.66        16.54         9.93 
TCGA-D8-A1Y2 TCGA-D8-A1Y3 TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27G TCGA-D8-A27H 
       14.24        14.14        17.42        16.04        13.45        13.05 
TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27T 
       14.43         9.44        16.41         4.80         0.76        13.08 
TCGA-D8-A27V TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-D8-A73U TCGA-D8-A73W 
       12.53        33.37        18.51        21.67        16.18         8.02 
TCGA-D8-A73X TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A10A TCGA-E2-A10B 
       12.10        43.00        34.42        27.52        40.41        37.51 
TCGA-E2-A10C TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14O TCGA-E2-A14Q TCGA-E2-A14T 
       40.11        28.44        28.87        44.68        38.24        33.30 
TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14W TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A14Z 
       43.33        34.26        32.02        31.96        28.60        18.51 
TCGA-E2-A150 TCGA-E2-A153 TCGA-E2-A154 TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A158 
       25.41        23.24        19.43        21.04        23.87        14.79 
TCGA-E2-A159 TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15H 
       25.05        22.82        17.29        21.63        18.21        12.92 
TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15P 
       17.42        19.40         9.04        20.58        11.05        19.56 
TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B1 
       17.06        14.07        14.99        60.53        53.62        53.03 
TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BC TCGA-E2-A1BD TCGA-E2-A1IE 
       33.01        32.35        28.50        16.47        17.10        38.30 
TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1IH TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IK 
       37.41        32.78        33.73        33.70        28.44        22.65 
TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L8 
        3.88        22.19        11.08        54.18        27.42        39.62 
TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LG TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK 
       40.47        28.90        18.87       106.75       102.61         8.75 
TCGA-E2-A1LL TCGA-E2-A2P5 TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A570 TCGA-E2-A573 
       43.04        16.93         5.52        15.72        30.61        34.92 
TCGA-E2-A574 TCGA-E2-A576 TCGA-E2-A9RU TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 
       26.56        34.29        12.85        34.82        32.88        36.82 
TCGA-E9-A1N6 TCGA-E9-A1N8 TCGA-E9-A1N9 TCGA-E9-A1NA TCGA-E9-A1NC TCGA-E9-A1ND 
       13.48        12.00        13.12        36.56        39.55        12.59 
TCGA-E9-A1NE TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R0 
       35.77        35.24        25.84         9.86        11.90        28.27 
TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R7 TCGA-E9-A1RA 
       34.95         2.56         6.12         3.02        21.21        32.09 
TCGA-E9-A1RD TCGA-E9-A1RF TCGA-E9-A1RG TCGA-E9-A1RH TCGA-E9-A1RI TCGA-E9-A226 
        1.12         6.58        21.27        34.59        35.64        34.13 
TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A22E 
       32.05        12.53        13.32        39.09        22.75        12.89 
TCGA-E9-A22H TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A295 TCGA-E9-A2JT 
       20.71         1.94         7.13        24.56         0.72         0.76 
TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3QA TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A54Y 
       26.07        18.41        30.18        15.72        12.33        23.84 
TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UO TCGA-E9-A6HE TCGA-EW-A1IW TCGA-EW-A1IX 
       14.70         0.79        13.81        15.39        12.20        39.72 
TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J5 
        8.48        18.21        18.90        13.25        16.57        15.68 
TCGA-EW-A1J6 TCGA-EW-A1OV TCGA-EW-A1OW TCGA-EW-A1OX TCGA-EW-A1OZ TCGA-EW-A1P0 
       28.77        25.94        22.82        29.95        40.41        41.13 
TCGA-EW-A1P1 TCGA-EW-A1P3 TCGA-EW-A1P5 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1P8 
       39.78        52.96        23.11        18.48        30.08         7.86 
TCGA-EW-A1PA TCGA-EW-A1PC TCGA-EW-A1PE TCGA-EW-A1PF TCGA-EW-A1PG TCGA-EW-A2FR 
       18.90         6.15        10.52        14.43        34.55        55.00 
TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A3U0 TCGA-EW-A423 TCGA-EW-A424 TCGA-GM-A2D9 
       22.09        34.03        17.49        10.16        23.51        59.57 
TCGA-GM-A2DA TCGA-GM-A2DC TCGA-GM-A2DD TCGA-GM-A2DH TCGA-GM-A2DI TCGA-GM-A2DK 
      216.76        83.34        75.02        72.10        85.15        86.96 
TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A2DO TCGA-GM-A3NW TCGA-GM-A3NY 
      115.69       106.06       101.62        85.35       110.50        38.20 
TCGA-GM-A3XG TCGA-GM-A3XL TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX 
       43.73        69.30        66.38        72.03        13.55        18.12 
TCGA-HN-A2NL TCGA-HN-A2OB TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LD-A66U TCGA-LD-A74U 
        2.60        62.43        11.84        11.57        21.24        13.22 
TCGA-LD-A7W5 TCGA-LD-A7W6 TCGA-LD-A9QF TCGA-LL-A440 TCGA-LL-A441 TCGA-LL-A442 
        7.10        13.28        10.62        24.95        11.44        10.95 
TCGA-LL-A50Y TCGA-LL-A5YL TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LL-A6FP 
       25.05        17.06        15.32        14.70        14.47        22.26 
TCGA-LL-A6FQ TCGA-LL-A6FR TCGA-LL-A73Y TCGA-LL-A73Z TCGA-LL-A740 TCGA-LL-A7SZ 
        2.63        16.08        15.68         7.46        14.50        14.70 
TCGA-LL-A8F5 TCGA-LL-A9Q3 TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D6 
       14.73        14.07        27.91        22.39         2.10        36.30 
TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RU TCGA-OL-A5RV TCGA-OL-A5RW 
       58.52        31.99        58.62        40.08        34.92        36.36 
TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66H TCGA-OL-A66J 
       28.87        24.72        22.32        20.38        26.70        65.62 
TCGA-OL-A66K TCGA-OL-A66L TCGA-OL-A66N TCGA-OL-A66O TCGA-OL-A66P TCGA-OL-A6VQ 
       41.92        42.77        26.04        17.36        14.07        19.73 
TCGA-OL-A6VR TCGA-OL-A97C TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE TCGA-PL-A8LX 
       40.11         8.91        47.01        64.21        86.96         0.16 
TCGA-PL-A8LY TCGA-PL-A8LZ TCGA-S3-A6ZF TCGA-S3-A6ZH TCGA-S3-AA0Z TCGA-S3-AA11 
        0.26         9.93        16.50        16.93        16.80        13.84 
TCGA-S3-AA12 TCGA-S3-AA14 TCGA-S3-AA15 TCGA-S3-AA17 TCGA-UU-A93S TCGA-W8-A86G 
       15.35        14.96        13.84        13.94         3.81        11.41 
TCGA-WT-AB41 TCGA-WT-AB44 TCGA-XX-A899 TCGA-XX-A89A TCGA-Z7-A8R6 
       52.96        29.03        15.35        16.04       107.05 

  AMP PEAK  6(4Q13.3) MUTATED AMP PEAK  6(4Q13.3) WILD-TYPE 
                         0.23                          0.03 
  AMP PEAK  6(4Q13.3) MUTATED AMP PEAK  6(4Q13.3) WILD-TYPE 
                       160.90                        234.28 
  AMP PEAK  6(4Q13.3) MUTATED AMP PEAK  6(4Q13.3) WILD-TYPE 
                        24.59                         24.49 
[1] "0.2 - 160.9 (24.6)" "0.0 - 234.3 (24.5)"
[1] "hr=" "1.5"
D6V2, continuous
                               vv
clus                            STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  AMP PEAK  6(4Q13.3) MUTATED        11       10        2        0        58
  AMP PEAK  6(4Q13.3) WILD-TYPE      78       71        6        3       295
                               vv
clus                            STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  AMP PEAK  6(4Q13.3) MUTATED          36         0         19          7
  AMP PEAK  6(4Q13.3) WILD-TYPE       209         2        131         22
                               vv
clus                            STAGE IIIC STAGE IV STAGE TIS STAGE X
  AMP PEAK  6(4Q13.3) MUTATED           10        4         0       3
  AMP PEAK  6(4Q13.3) WILD-TYPE         53       16         1      10
D6V3, multiclass
            clus
vv           AMP PEAK  6(4Q13.3) MUTATED AMP PEAK  6(4Q13.3) WILD-TYPE
  STAGE I                             11                            78
  STAGE IA                            10                            71
  STAGE IB                             2                             6
  STAGE II                             0                             3
  STAGE IIA                           58                           295
  STAGE IIB                           36                           209
  STAGE III                            0                             2
  STAGE IIIA                          19                           131
  STAGE IIIB                           7                            22
  STAGE IIIC                          10                            53
  STAGE IV                             4                            16
  STAGE TIS                            0                             1
  STAGE X                              3                            10
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                             T1  T2  T3  T4
  AMP PEAK  6(4Q13.3) MUTATED    41  90  18  11
  AMP PEAK  6(4Q13.3) WILD-TYPE 231 526 112  29
D6V4, multiclass
    clus
vv   AMP PEAK  6(4Q13.3) MUTATED AMP PEAK  6(4Q13.3) WILD-TYPE
  T1                          41                           231
  T2                          90                           526
  T3                          18                           112
  T4                          11                            29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                             N0  N1  N2  N3
  AMP PEAK  6(4Q13.3) MUTATED    72  58  14  12
  AMP PEAK  6(4Q13.3) WILD-TYPE 429 292 103  63
D6V5, multiclass
    clus
vv   AMP PEAK  6(4Q13.3) MUTATED AMP PEAK  6(4Q13.3) WILD-TYPE
  N0                          72                           429
  N1                          58                           292
  N2                          14                           103
  N3                          12                            63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D6V6, binary
                               cls
clus                              0   1
  AMP PEAK  6(4Q13.3) MUTATED   140   4
  AMP PEAK  6(4Q13.3) WILD-TYPE 739  17
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  6(4Q13.3) MUTATED    140    4
  AMP PEAK  6(4Q13.3) WILD-TYPE  739   17
   clus
vv  AMP PEAK  6(4Q13.3) MUTATED AMP PEAK  6(4Q13.3) WILD-TYPE
  0                         140                           739
  1                           4                            17
[1] 2 2
[1] FALSE
D6V7, binary
                               cls
clus                              0   1
  AMP PEAK  6(4Q13.3) MUTATED   158   3
  AMP PEAK  6(4Q13.3) WILD-TYPE 893   8
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  6(4Q13.3) MUTATED    158    3
  AMP PEAK  6(4Q13.3) WILD-TYPE  893    8
        clus
vv       AMP PEAK  6(4Q13.3) MUTATED AMP PEAK  6(4Q13.3) WILD-TYPE
  FEMALE                         158                           893
  MALE                             3                             8
[1] 2 2
[1] FALSE
                               vv
clus                            INFILTRATING CARCINOMA NOS
  AMP PEAK  6(4Q13.3) MUTATED                            0
  AMP PEAK  6(4Q13.3) WILD-TYPE                          1
                               vv
clus                            INFILTRATING DUCTAL CARCINOMA
  AMP PEAK  6(4Q13.3) MUTATED                             140
  AMP PEAK  6(4Q13.3) WILD-TYPE                           623
                               vv
clus                            INFILTRATING LOBULAR CARCINOMA
  AMP PEAK  6(4Q13.3) MUTATED                                7
  AMP PEAK  6(4Q13.3) WILD-TYPE                            185
                               vv
clus                            MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  AMP PEAK  6(4Q13.3) MUTATED                     2                     0
  AMP PEAK  6(4Q13.3) WILD-TYPE                   4                     4
                               vv
clus                            MIXED HISTOLOGY (PLEASE SPECIFY)
  AMP PEAK  6(4Q13.3) MUTATED                                  2
  AMP PEAK  6(4Q13.3) WILD-TYPE                               28
                               vv
clus                            MUCINOUS CARCINOMA OTHER  SPECIFY
  AMP PEAK  6(4Q13.3) MUTATED                    1              9
  AMP PEAK  6(4Q13.3) WILD-TYPE                 16             39
D6V8, multiclass
                                  clus
vv                                 AMP PEAK  6(4Q13.3) MUTATED
  INFILTRATING CARCINOMA NOS                                 0
  INFILTRATING DUCTAL CARCINOMA                            140
  INFILTRATING LOBULAR CARCINOMA                             7
  MEDULLARY CARCINOMA                                        2
  METAPLASTIC CARCINOMA                                      0
  MIXED HISTOLOGY (PLEASE SPECIFY)                           2
  MUCINOUS CARCINOMA                                         1
  OTHER  SPECIFY                                             9
                                  clus
vv                                 AMP PEAK  6(4Q13.3) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                   1
  INFILTRATING DUCTAL CARCINOMA                              623
  INFILTRATING LOBULAR CARCINOMA                             185
  MEDULLARY CARCINOMA                                          4
  METAPLASTIC CARCINOMA                                        4
  MIXED HISTOLOGY (PLEASE SPECIFY)                            28
  MUCINOUS CARCINOMA                                          16
  OTHER  SPECIFY                                              39
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D6V9, binary
                               cls
clus                              0   1
  AMP PEAK  6(4Q13.3) MUTATED    49 112
  AMP PEAK  6(4Q13.3) WILD-TYPE 239 662
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  6(4Q13.3) MUTATED     49  112
  AMP PEAK  6(4Q13.3) WILD-TYPE  239  662
     clus
vv    AMP PEAK  6(4Q13.3) MUTATED AMP PEAK  6(4Q13.3) WILD-TYPE
  NO                           49                           239
  YES                         112                           662
[1] 2 2
[1] FALSE
D6V10, continuous
                               vv
clus                            AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK  6(4Q13.3) MUTATED                                  1     8
  AMP PEAK  6(4Q13.3) WILD-TYPE                                0    52
                               vv
clus                            BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK  6(4Q13.3) MUTATED                          28    99
  AMP PEAK  6(4Q13.3) WILD-TYPE                       142   637
D6V11, multiclass
                                  clus
vv                                 AMP PEAK  6(4Q13.3) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                           1
  ASIAN                                                      8
  BLACK OR AFRICAN AMERICAN                                 28
  WHITE                                                     99
                                  clus
vv                                 AMP PEAK  6(4Q13.3) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                             0
  ASIAN                                                       52
  BLACK OR AFRICAN AMERICAN                                  142
  WHITE                                                      637
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D6V12, binary
                               cls
clus                              0   1
  AMP PEAK  6(4Q13.3) MUTATED     8 124
  AMP PEAK  6(4Q13.3) WILD-TYPE  30 734
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  6(4Q13.3) MUTATED      8  124
  AMP PEAK  6(4Q13.3) WILD-TYPE   30  734
                        clus
vv                       AMP PEAK  6(4Q13.3) MUTATED
  HISPANIC OR LATINO                               8
  NOT HISPANIC OR LATINO                         124
                        clus
vv                       AMP PEAK  6(4Q13.3) WILD-TYPE
  HISPANIC OR LATINO                                30
  NOT HISPANIC OR LATINO                           734
[1] 2 2
[1] FALSE

Clustering(7) Variable = AMP PEAK  7(5P15.33) MUTATION ANALYSIS
D7V1, survival
                                sevent
clus2                              0   1
  AMP PEAK  7(5P15.33) MUTATED   335  48
  AMP PEAK  7(5P15.33) WILD-TYPE 581  80
  AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE 
                           383                            661 
  AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE 
                            48                             80 
$`AMP PEAK  7(5P15.33) MUTATED`
TCGA-3C-AAAU TCGA-A1-A0SJ TCGA-A1-A0SK TCGA-A1-A0SN TCGA-A1-A0SO TCGA-A1-A0SP 
      129.14        13.68        31.79        39.32        28.01        19.20 
TCGA-A2-A04P TCGA-A2-A04T TCGA-A2-A04W TCGA-A2-A0CX TCGA-A2-A0D0 TCGA-A2-A0D2 
       18.02        73.84       101.98        56.81        67.33        33.76 
TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EQ TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EV 
      134.40        80.28        79.76        35.05        34.29        31.82 
TCGA-A2-A0EX TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0T1 TCGA-A2-A0T3 TCGA-A2-A0T6 
       24.72        27.12        44.88        17.13        49.84        18.90 
TCGA-A2-A0T7 TCGA-A2-A0YE TCGA-A2-A0YG TCGA-A2-A0YM TCGA-A2-A0YT TCGA-A2-A1FW 
       20.75        18.21        21.90        31.73        23.77        17.36 
TCGA-A2-A1FX TCGA-A2-A1G0 TCGA-A2-A1G1 TCGA-A2-A25B TCGA-A2-A3XU TCGA-A2-A3XX 
       60.72        20.25        19.20        42.44        29.98        47.31 
TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4S1 TCGA-A2-A4S2 
       34.98        50.37         7.30        24.39        26.96        21.14 
TCGA-A2-A4S3 TCGA-A7-A0CD TCGA-A7-A0CJ TCGA-A7-A0DB TCGA-A7-A0DC TCGA-A7-A13D 
       21.90        38.30        30.61        33.11        29.79        31.73 
TCGA-A7-A13E TCGA-A7-A13F TCGA-A7-A26I TCGA-A7-A26J TCGA-A7-A2KD TCGA-A7-A425 
       20.19        25.15        21.73        20.61        22.32        14.70 
TCGA-A7-A4SB TCGA-A7-A4SD TCGA-A7-A4SF TCGA-A7-A56D TCGA-A7-A5ZV TCGA-A7-A6VV 
       13.74        14.50        17.92        14.73        12.10        10.29 
TCGA-A7-A6VW TCGA-A7-A6VX TCGA-A8-A06O TCGA-A8-A06Q TCGA-A8-A06U TCGA-A8-A06X 
        9.37        10.42        13.02         1.02        29.03        31.00 
TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A079 TCGA-A8-A07G TCGA-A8-A07O 
       26.01         1.02        17.03         9.01        18.97         9.99 
TCGA-A8-A07U TCGA-A8-A07W TCGA-A8-A07Z TCGA-A8-A086 TCGA-A8-A08B TCGA-A8-A08F 
       24.99         9.99        45.07        13.02        38.01        33.01 
TCGA-A8-A08G TCGA-A8-A08I TCGA-A8-A08P TCGA-A8-A08R TCGA-A8-A08S TCGA-A8-A08X 
       19.96        12.00        31.00         0.99        33.01        43.00 
TCGA-A8-A093 TCGA-A8-A095 TCGA-A8-A097 TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09N 
       17.95        41.98        12.00         9.99        12.00         1.02 
TCGA-A8-A09Q TCGA-A8-A09R TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0A4 TCGA-A8-A0A9 
       25.02         8.98        14.01        12.00        13.02        27.02 
TCGA-AC-A23E TCGA-AC-A23G TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2QJ TCGA-AC-A3HN 
        2.37        10.85         1.48        38.53         2.27        16.31 
TCGA-AC-A62V TCGA-AC-A7VC TCGA-AC-A8OP TCGA-AC-A8OQ TCGA-AN-A03Y TCGA-AN-A04C 
       11.44         0.03        20.19         1.12         0.33         1.78 
TCGA-AN-A0AJ TCGA-AN-A0AK TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0FJ 
        9.96         7.36         0.16         0.33         0.33         7.96 
TCGA-AN-A0FK TCGA-AN-A0FX TCGA-AN-A0FY TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO 
        7.00         0.33         0.33         0.33         0.33        12.33 
TCGA-AN-A0XU TCGA-AO-A03L TCGA-AO-A03M TCGA-AO-A03O TCGA-AO-A0J3 TCGA-AO-A0J6 
        0.33        80.28        61.35        81.63        21.40        37.48 
TCGA-AO-A0J7 TCGA-AO-A0J9 TCGA-AO-A0JC TCGA-AO-A0JE TCGA-AO-A0JL TCGA-AO-A0JM 
       20.32        53.03        50.86        76.77        55.33        71.80 
TCGA-AO-A128 TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12E TCGA-AO-A1KR TCGA-AO-A1KS 
      106.78        90.58        98.27        57.30        70.39         0.53 
TCGA-AQ-A04H TCGA-AQ-A0Y5 TCGA-AQ-A54N TCGA-AQ-A54O TCGA-AR-A0TP TCGA-AR-A0TR 
       24.79         5.65         2.56        32.91       111.32         5.26 
TCGA-AR-A0TV TCGA-AR-A0TW TCGA-AR-A0U1 TCGA-AR-A1AI TCGA-AR-A1AK TCGA-AR-A1AM 
       42.35        98.93       101.95        61.84        51.25        76.11 
TCGA-AR-A1AV TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24R TCGA-AR-A24U TCGA-AR-A24V 
       61.28        33.73       160.90        87.22        53.36        85.35 
TCGA-AR-A24W TCGA-AR-A254 TCGA-AR-A255 TCGA-AR-A2LK TCGA-AR-A2LL TCGA-AR-A2LR 
       50.96        72.76        58.92        54.21        66.15        20.38 
TCGA-AR-A5QM TCGA-AR-A5QP TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0IJ TCGA-B6-A0IO 
       54.74        20.45        77.62       143.38       176.98       110.14 
TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0WY TCGA-B6-A0X1 
      140.88       211.56       188.68        79.63       113.79       186.48 
TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A408 TCGA-B6-A40B TCGA-BH-A0AU TCGA-BH-A0AV 
      101.52        73.51        68.12       103.63        24.53        59.84 
TCGA-BH-A0AW TCGA-BH-A0B3 TCGA-BH-A0B5 TCGA-BH-A0B7 TCGA-BH-A0BA TCGA-BH-A0BF 
       20.45        39.55        48.36        56.98        37.22        25.71 
TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BP TCGA-BH-A0BR TCGA-BH-A0C1 TCGA-BH-A0C7 
       21.70        44.05        48.69        53.69        44.02        42.90 
TCGA-BH-A0DI TCGA-BH-A0DL TCGA-BH-A0DP TCGA-BH-A0DS TCGA-BH-A0EB TCGA-BH-A0EE 
       22.13        48.23        15.65         2.56        24.49        31.00 
TCGA-BH-A0EI TCGA-BH-A0H7 TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HX TCGA-BH-A0HY 
       24.43        23.08        13.61        36.85        27.25        50.79 
TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A0WA TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18M 
       42.35        44.81        23.05        90.84        26.66        72.56 
TCGA-BH-A18N TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1EN TCGA-BH-A1EO 
       37.74         7.36        51.39        51.16        69.93        91.99 
TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F2 
       42.28        12.00        55.69        17.69        25.81        31.53 
TCGA-BH-A1F6 TCGA-BH-A1FM TCGA-BH-A202 TCGA-BH-A203 TCGA-BH-A208 TCGA-BH-A2L8 
       97.48        45.63        26.14        38.60        57.83        20.12 
TCGA-BH-A5IZ TCGA-BH-A6R8 TCGA-BH-A6R9 TCGA-BH-A8FY TCGA-C8-A12L TCGA-C8-A12O 
       18.64         9.63         5.26         9.70        11.93        12.66 
TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A135 TCGA-C8-A1HE 
       11.77        12.66         3.16         2.24         1.05        12.33 
TCGA-C8-A1HI TCGA-C8-A1HK TCGA-C8-A1HM TCGA-C8-A27B TCGA-C8-A3M8 TCGA-D8-A13Y 
       11.28        12.03         2.30         0.99         0.23        11.90 
TCGA-D8-A142 TCGA-D8-A146 TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JE TCGA-D8-A1JF 
       13.97        21.14        14.17        17.49        18.90        12.03 
TCGA-D8-A1JG TCGA-D8-A1JH TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JT 
       12.03        14.01        20.09        20.12        20.09        13.32 
TCGA-D8-A1X6 TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XK TCGA-D8-A1XL 
       17.79        23.90        27.58        18.15        14.50        19.92 
TCGA-D8-A1XS TCGA-D8-A1XU TCGA-D8-A1XW TCGA-D8-A1XY TCGA-D8-A1XZ TCGA-D8-A1Y0 
       16.31        12.99        12.66        16.54        15.32        15.52 
TCGA-D8-A1Y2 TCGA-D8-A27H TCGA-D8-A27I TCGA-D8-A27V TCGA-D8-A27W TCGA-D8-A73X 
       14.24        13.05        14.43        12.53        12.26        12.10 
TCGA-E2-A107 TCGA-E2-A10B TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14S TCGA-E2-A14T 
       34.42        37.51        44.68        40.96        33.17        33.30 
TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A152 TCGA-E2-A153 TCGA-E2-A155 TCGA-E2-A15A 
       28.60        18.51        27.12        23.24        21.04        23.34 
TCGA-E2-A15E TCGA-E2-A15G TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15S TCGA-E2-A1AZ 
       20.71        18.21        20.58        11.05        14.07        60.53 
TCGA-E2-A1B0 TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1BD TCGA-E2-A1IH TCGA-E2-A1II 
       53.62        33.01        32.35        17.10        33.73        33.70 
TCGA-E2-A1IN TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L9 TCGA-E2-A1LG 
       22.19        11.08        54.18        27.42        19.66        18.87 
TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A1LL TCGA-E2-A2P5 TCGA-E2-A574 
      106.75       102.61         8.75        43.04        16.93        26.56 
TCGA-E2-A9RU TCGA-E9-A1N6 TCGA-E9-A1N8 TCGA-E9-A1N9 TCGA-E9-A1NA TCGA-E9-A1NE 
       12.85        13.48        12.00        13.12        36.56        35.77 
TCGA-E9-A1NI TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1R7 
        9.86         2.56         6.12         3.02         2.76        21.21 
TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RD TCGA-E9-A1RH TCGA-E9-A22D TCGA-E9-A22G 
       32.09        40.24         1.12        34.59        41.03        23.51 
TCGA-E9-A243 TCGA-E9-A247 TCGA-E9-A249 TCGA-E9-A295 TCGA-E9-A3HO TCGA-E9-A54X 
       17.06        27.22         7.13         0.72        26.07        12.33 
TCGA-E9-A54Y TCGA-E9-A5FL TCGA-E9-A5UP TCGA-EW-A1IY TCGA-EW-A1J3 TCGA-EW-A1J6 
       23.84         0.79        14.40         8.48        16.57        28.77 
TCGA-EW-A1P0 TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A1P8 TCGA-EW-A1PC TCGA-EW-A1PD 
       41.13        29.82        23.11         7.86         6.15        13.94 
TCGA-EW-A3U0 TCGA-EW-A423 TCGA-GI-A2C9 TCGA-GM-A2DC TCGA-GM-A2DH TCGA-GM-A3NW 
       17.49        10.16       109.87        83.34        72.10       110.50 
TCGA-GM-A3XL TCGA-GM-A3XN TCGA-GM-A5PV TCGA-HN-A2OB TCGA-LD-A66U TCGA-LL-A441 
       69.30        66.38        13.55        62.43        21.24        11.44 
TCGA-LL-A5YM TCGA-LL-A5YP TCGA-LL-A6FQ TCGA-LL-A7SZ TCGA-LL-A8F5 TCGA-LL-A9Q3 
       15.32        14.79         2.63        14.70        14.73        14.07 
TCGA-MS-A51U TCGA-OL-A5RW TCGA-OL-A5S0 TCGA-OL-A66N TCGA-OL-A97C TCGA-PE-A5DC 
       22.39        36.36        20.38        26.04         8.91        47.01 
TCGA-PE-A5DE TCGA-PL-A8LX TCGA-S3-A6ZG TCGA-S3-A6ZH TCGA-UL-AAZ6 TCGA-UU-A93S 
       86.96         0.16        13.12        16.93        17.03         3.81 
TCGA-W8-A86G TCGA-WT-AB41 TCGA-XX-A899 TCGA-Z7-A8R5 TCGA-Z7-A8R6 
       11.41        52.96        15.35       108.07       107.05 

$`AMP PEAK  7(5P15.33) WILD-TYPE`
TCGA-3C-AALI TCGA-3C-AALJ TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT0 TCGA-5L-AAT1 
      131.67        42.81        40.14        11.44        48.56        48.36 
TCGA-5T-A9QA TCGA-A1-A0SB TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG 
        9.96         8.52        14.37        43.43        48.10        14.27 
TCGA-A1-A0SH TCGA-A1-A0SI TCGA-A1-A0SM TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04Q 
       47.24        20.88         7.96        18.21       104.81        78.41 
TCGA-A2-A04R TCGA-A2-A04U TCGA-A2-A04V TCGA-A2-A04X TCGA-A2-A04Y TCGA-A2-A0CK 
      121.94        87.25        63.12        55.43        36.13       136.73 
TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CQ TCGA-A2-A0CR 
       99.12        24.79       114.81        92.48        88.60       107.93 
TCGA-A2-A0CS TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0D1 
       75.55        75.25         5.19        98.99       107.93        34.55 
TCGA-A2-A0D3 TCGA-A2-A0D4 TCGA-A2-A0EM TCGA-A2-A0EP TCGA-A2-A0ER TCGA-A2-A0ES 
       61.58        25.22       101.72       107.61        74.40        72.00 
TCGA-A2-A0EW TCGA-A2-A0EY TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SX TCGA-A2-A0SY 
       61.94        63.29        99.19        54.64        50.43        44.28 
TCGA-A2-A0T0 TCGA-A2-A0T2 TCGA-A2-A0T4 TCGA-A2-A0T5 TCGA-A2-A0YC TCGA-A2-A0YD 
       17.52         8.38        20.52        17.46        32.55        25.28 
TCGA-A2-A0YF TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A0YK TCGA-A2-A0YL 
       50.47        21.67        49.48        18.61        19.33        48.46 
TCGA-A2-A1FV TCGA-A2-A1FZ TCGA-A2-A1G4 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25A 
       23.47        22.45        19.56        16.47        52.47       107.70 
TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD 
       17.19        18.15       105.34        10.59        20.88        39.65 
TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3Y0 TCGA-A2-A4RY 
       33.93        83.01        32.75        49.48        38.37        21.30 
TCGA-A2-A4S0 TCGA-A7-A0CE TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0D9 TCGA-A7-A0DA 
       23.21        35.31        34.29        35.47        37.45        35.67 
TCGA-A7-A13G TCGA-A7-A13H TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26G TCGA-A7-A26H 
       23.61        29.56        31.36        24.26        23.74        23.80 
TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3J1 TCGA-A7-A3RF TCGA-A7-A426 
       11.34        10.59        10.29        11.28        13.41        11.97 
TCGA-A7-A4SA TCGA-A7-A4SE TCGA-A7-A5ZW TCGA-A7-A5ZX TCGA-A7-A6VY TCGA-A8-A06P 
       14.93        21.17        10.72        11.05         8.75        13.02 
TCGA-A8-A06R TCGA-A8-A06T TCGA-A8-A076 TCGA-A8-A07B TCGA-A8-A07E TCGA-A8-A07F 
       17.98        53.06        53.98        43.00        19.99        18.97 
TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07L TCGA-A8-A07P TCGA-A8-A07R TCGA-A8-A07S 
       14.01        12.00        32.05        10.98         8.98         7.99 
TCGA-A8-A082 TCGA-A8-A084 TCGA-A8-A085 TCGA-A8-A08A TCGA-A8-A08C TCGA-A8-A08J 
       18.05        15.06        36.95         0.99        28.96        37.05 
TCGA-A8-A08L TCGA-A8-A08O TCGA-A8-A08T TCGA-A8-A08Z TCGA-A8-A091 TCGA-A8-A092 
        9.99        31.00       112.08        40.01        33.01        30.97 
TCGA-A8-A099 TCGA-A8-A09C TCGA-A8-A09D TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K 
        9.99         1.02        50.04        49.05        45.07        29.98 
TCGA-A8-A09M TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A0A2 TCGA-A8-A0A6 
       33.07        19.04        15.02         0.99        19.04        21.04 
TCGA-A8-A0A7 TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23H TCGA-AC-A2BM 
        0.99        17.03        38.04         0.95         5.72        99.35 
TCGA-AC-A2FB TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2FO 
       40.57        55.43        36.99        38.79        26.04        50.70 
TCGA-AC-A2QH TCGA-AC-A2QI TCGA-AC-A3BB TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3TN 
       33.04         0.92        32.45        14.83        22.19        14.99 
TCGA-AC-A3W5 TCGA-AC-A3W6 TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A5XS TCGA-AC-A62X 
       16.57        19.79        23.24        24.79         1.55        13.71 
TCGA-AC-A62Y TCGA-AC-A6IV TCGA-AC-A6IW TCGA-AC-A6IX TCGA-AC-A6NO TCGA-AC-A7VB 
       17.42        18.67        13.58        12.26         1.68         8.22 
TCGA-AC-A8OR TCGA-AC-A8OS TCGA-AN-A03X TCGA-AN-A041 TCGA-AN-A046 TCGA-AN-A049 
        1.32         2.30         0.33         0.23         0.33         0.62 
TCGA-AN-A04A TCGA-AN-A04D TCGA-AN-A0AL TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0FF 
        2.96         1.71         6.51         0.33         6.44         5.65 
TCGA-AN-A0FL TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FW 
        7.59         7.17         6.28         7.04         0.33         0.36 
TCGA-AN-A0FZ TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XV 
        0.33         0.30         0.33         0.33         0.33         5.33 
TCGA-AN-A0XW TCGA-AO-A03N TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03U 
        5.59        66.77        95.70        68.75        47.87        58.95 
TCGA-AO-A03V TCGA-AO-A0J2 TCGA-AO-A0J4 TCGA-AO-A0J5 TCGA-AO-A0J8 TCGA-AO-A0JA 
       29.13        32.78        52.18        26.04        22.36        21.53 
TCGA-AO-A0JB TCGA-AO-A0JD TCGA-AO-A0JF TCGA-AO-A0JG TCGA-AO-A0JI TCGA-AO-A0JJ 
       50.70        72.00        21.37        26.24        50.24        62.04 
TCGA-AO-A124 TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A129 TCGA-AO-A12D TCGA-AO-A12F 
      102.58        99.25       108.72       108.03        64.04        48.36 
TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KQ TCGA-AO-A1KT 
       41.62        28.37        14.73        82.62        61.87        17.79 
TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AQ-A7U7 TCGA-AR-A0TQ 
       26.93       130.09        15.62        32.52        19.20        73.64 
TCGA-AR-A0TS TCGA-AR-A0TT TCGA-AR-A0TX TCGA-AR-A0TY TCGA-AR-A0TZ TCGA-AR-A0U0 
       74.79        86.66        64.83        55.86       107.24        65.36 
TCGA-AR-A0U2 TCGA-AR-A0U3 TCGA-AR-A0U4 TCGA-AR-A1AH TCGA-AR-A1AJ TCGA-AR-A1AL 
       83.87       114.02        85.97        75.55        52.77        48.82 
TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AQ TCGA-AR-A1AR TCGA-AR-A1AS 
       43.73        43.56        39.98        43.07        17.23        37.81 
TCGA-AR-A1AU TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A24K TCGA-AR-A24L TCGA-AR-A24M 
       76.21        63.62        62.14        50.89        94.22        96.89 
TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24Q TCGA-AR-A24S TCGA-AR-A24T 
       78.51        84.20         2.76       104.28        97.84        76.01 
TCGA-AR-A24X TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A251 TCGA-AR-A252 TCGA-AR-A256 
       83.77        79.00        89.00        78.48        73.18        93.83 
TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO 
      143.21        20.25        62.86        52.11        38.17        39.39 
TCGA-AR-A2LQ TCGA-AR-A5QN TCGA-AR-A5QQ TCGA-B6-A0I5 TCGA-B6-A0I9 TCGA-B6-A0IA 
       40.54        16.04        10.59       149.59        12.13       220.90 
TCGA-B6-A0IB TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0IK 
      129.57        50.70        65.72       146.50       112.37        18.77 
TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IP TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RI 
      126.12        84.59       110.93        68.45       189.01       234.28 
TCGA-B6-A0RL TCGA-B6-A0RM TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RP TCGA-B6-A0RQ 
       81.17        78.02       172.96       162.05       102.77       140.48 
TCGA-B6-A0RS TCGA-B6-A0RT TCGA-B6-A0RU TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WW 
      100.70        89.46       131.21       157.41        97.48        18.35 
TCGA-B6-A0WX TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 
       21.47       129.57       129.70        28.27        68.94        58.88 
TCGA-B6-A1KC TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A401 TCGA-B6-A402 TCGA-B6-A40C 
       43.59       139.17       170.17        85.35        74.99        71.15 
TCGA-BH-A0AY TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B2 TCGA-BH-A0B4 TCGA-BH-A0B6 
       25.55        28.50        46.95        40.83        39.16        56.94 
TCGA-BH-A0B9 TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BG TCGA-BH-A0BM TCGA-BH-A0BO 
       51.68        32.02        18.21        24.85        61.68        35.67 
TCGA-BH-A0BQ TCGA-BH-A0BS TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0BW TCGA-BH-A0BZ 
       27.19        53.95        45.57        49.94        11.67        49.05 
TCGA-BH-A0C0 TCGA-BH-A0C3 TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH 
       41.75        48.13        45.83        31.17        23.44        38.01 
TCGA-BH-A0DK TCGA-BH-A0DO TCGA-BH-A0DQ TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX 
       13.91        17.26         3.22        38.47        67.86        47.41 
TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E6 TCGA-BH-A0E7 
       16.27         4.41        15.68        14.30         9.63        44.81 
TCGA-BH-A0E9 TCGA-BH-A0EA TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 
       46.19        32.58        30.35        10.78        15.16        37.78 
TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HI 
       35.51        24.56        41.00        52.96        26.50        20.38 
TCGA-BH-A0HK TCGA-BH-A0HO TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0RX TCGA-BH-A0W3 
        5.85         2.50        12.89        51.32         5.59        23.93 
TCGA-BH-A0W4 TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18P 
       24.95         8.81         2.01         7.23        20.12        30.28 
TCGA-BH-A18Q TCGA-BH-A18R TCGA-BH-A18S TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EX 
       55.63        37.55        66.05       113.82        82.85        49.58 
TCGA-BH-A1F5 TCGA-BH-A1F8 TCGA-BH-A1FB TCGA-BH-A1FC TCGA-BH-A1FD TCGA-BH-A1FE 
       89.16        24.66       120.62       114.15        33.17        74.73 
TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FN TCGA-BH-A1FR 
      122.89        36.92        63.35        55.00        72.07       144.59 
TCGA-BH-A1FU TCGA-BH-A201 TCGA-BH-A204 TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A28Q 
       72.07        28.14        83.31       130.16        10.65         6.44 
TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5J0 TCGA-BH-A8FZ TCGA-BH-A8G0 
       10.52       109.28         8.94        23.51        18.87        21.76 
TCGA-BH-AB28 TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12U TCGA-C8-A12V TCGA-C8-A12W 
        9.44        11.77        11.77        12.66        12.66        12.66 
TCGA-C8-A12X TCGA-C8-A12Z TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A137 TCGA-C8-A138 
       12.66         0.39         1.87         1.12         4.11         4.08 
TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HJ TCGA-C8-A1HL TCGA-C8-A1HN TCGA-C8-A26V 
       10.92        11.34         0.16        10.42         3.25         0.30 
TCGA-C8-A26W TCGA-C8-A26X TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A274 
        0.23         0.36         0.43         8.28         9.67         9.53 
TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A3M7 TCGA-C8-A8HP TCGA-C8-A8HQ 
        0.03         9.50        12.20         0.03        13.02        12.49 
TCGA-C8-A8HR TCGA-C8-A9FZ TCGA-D8-A13Z TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A143 
       13.41        19.46        20.88        13.25        20.58        14.17 
TCGA-D8-A145 TCGA-D8-A147 TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JD 
       13.48        19.20        16.50        18.71        15.78        18.15 
TCGA-D8-A1JI TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1JP TCGA-D8-A1JS TCGA-D8-A1JU 
       18.97        19.40        20.38        21.01        12.20        14.70 
TCGA-D8-A1X5 TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1XC TCGA-D8-A1XD TCGA-D8-A1XF 
       18.58        16.73        25.74        12.39        17.16        15.22 
TCGA-D8-A1XG TCGA-D8-A1XJ TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XQ TCGA-D8-A1XR 
       14.73        21.83        17.69        15.55        16.41        15.85 
TCGA-D8-A1XT TCGA-D8-A1XV TCGA-D8-A1Y1 TCGA-D8-A1Y3 TCGA-D8-A27E TCGA-D8-A27F 
        6.35        15.16         9.93        14.14        17.42        16.04 
TCGA-D8-A27G TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27P 
       13.45         9.44        16.41        13.48         4.80         0.76 
TCGA-D8-A27R TCGA-D8-A27T TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-D8-A73U 
       10.09        13.08        33.37        18.51        21.67        16.18 
TCGA-D8-A73W TCGA-E2-A105 TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10C 
        8.02        43.00        27.52        46.59        40.41        40.11 
TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14Q TCGA-E2-A14R TCGA-E2-A14U 
       28.44        28.87        47.15        38.24        38.60        43.33 
TCGA-E2-A14V TCGA-E2-A14W TCGA-E2-A14X TCGA-E2-A150 TCGA-E2-A154 TCGA-E2-A156 
       34.26        32.02        31.96        25.41        19.43        23.87 
TCGA-E2-A158 TCGA-E2-A159 TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15F TCGA-E2-A15H 
       14.79        25.05        22.82        17.29        21.63        12.92 
TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15O TCGA-E2-A15P TCGA-E2-A15R 
       17.42        19.40         9.04        13.02        19.56        17.06 
TCGA-E2-A15T TCGA-E2-A1B1 TCGA-E2-A1B6 TCGA-E2-A1BC TCGA-E2-A1IE TCGA-E2-A1IF 
       14.99        53.03        28.50        16.47        38.30        37.41 
TCGA-E2-A1IG TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IO TCGA-E2-A1L8 
       32.78        28.44        22.65         3.88        20.98        39.62 
TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z 
       24.59        40.47        28.90         5.52        15.72         8.28 
TCGA-E2-A570 TCGA-E2-A573 TCGA-E2-A576 TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 
       30.61        34.92        34.29        34.82        32.88        36.82 
TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1QZ TCGA-E9-A1R0 
       39.55        12.59        35.24        25.84        11.90        28.27 
TCGA-E9-A1R2 TCGA-E9-A1RA TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RG TCGA-E9-A1RI 
       34.95        32.09        34.65         6.58        21.27        35.64 
TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22B 
       34.13        32.05        12.53        13.32        39.09        22.75 
TCGA-E9-A22E TCGA-E9-A22H TCGA-E9-A244 TCGA-E9-A248 TCGA-E9-A24A TCGA-E9-A2JS 
       12.89        20.71         0.69         1.94        24.56        29.72 
TCGA-E9-A2JT TCGA-E9-A3Q9 TCGA-E9-A3QA TCGA-E9-A3X8 TCGA-E9-A5FK TCGA-E9-A5UO 
        0.76        18.41        30.18        15.72        14.70        13.81 
TCGA-E9-A6HE TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 
       15.39        12.20        39.72        18.21        18.90        13.25 
TCGA-EW-A1J5 TCGA-EW-A1OV TCGA-EW-A1OW TCGA-EW-A1OX TCGA-EW-A1OY TCGA-EW-A1OZ 
       15.68        25.94        22.82        29.95        29.85        40.41 
TCGA-EW-A1P1 TCGA-EW-A1P3 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1PA TCGA-EW-A1PB 
       39.78        52.96        18.48        30.08        18.90        19.99 
TCGA-EW-A1PE TCGA-EW-A1PF TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FR TCGA-EW-A2FS 
       10.52        14.43        34.55        19.96        55.00        52.73 
TCGA-EW-A2FV TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A424 TCGA-GI-A2C8 TCGA-GM-A2D9 
       25.91        22.09        34.03        23.51         7.40        59.57 
TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DD TCGA-GM-A2DF TCGA-GM-A2DI TCGA-GM-A2DK 
      216.76        79.10        75.02        70.85        85.15        86.96 
TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A2DO TCGA-GM-A3NY TCGA-GM-A3XG 
      115.69       106.06       101.62        85.35        38.20        43.73 
TCGA-GM-A4E0 TCGA-GM-A5PX TCGA-HN-A2NL TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LD-A74U 
       72.03        18.12         2.60        11.84        11.57        13.22 
TCGA-LD-A7W5 TCGA-LD-A7W6 TCGA-LD-A9QF TCGA-LL-A440 TCGA-LL-A442 TCGA-LL-A50Y 
        7.10        13.28        10.62        24.95        10.95        25.05 
TCGA-LL-A5YL TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LL-A6FP TCGA-LL-A6FR TCGA-LL-A73Y 
       17.06        14.70        14.47        22.26        16.08        15.68 
TCGA-LL-A73Z TCGA-LL-A740 TCGA-LL-A7T0 TCGA-LQ-A4E4 TCGA-OK-A5Q2 TCGA-OL-A5D6 
        7.46        14.50        12.36        27.91         2.10        36.30 
TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RU TCGA-OL-A5RV TCGA-OL-A5RX 
       58.52        31.99        58.62        40.08        34.92        28.87 
TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66K 
       24.72        22.32        26.70        23.47        65.62        41.92 
TCGA-OL-A66L TCGA-OL-A66O TCGA-OL-A66P TCGA-OL-A6VO TCGA-OL-A6VQ TCGA-OL-A6VR 
       42.77        17.36        14.07        28.21        19.73        40.11 
TCGA-PE-A5DD TCGA-PL-A8LY TCGA-PL-A8LZ TCGA-S3-A6ZF TCGA-S3-AA0Z TCGA-S3-AA10 
       64.21         0.26         9.93        16.50        16.80        15.39 
TCGA-S3-AA11 TCGA-S3-AA12 TCGA-S3-AA14 TCGA-S3-AA15 TCGA-S3-AA17 TCGA-WT-AB44 
       13.84        15.35        14.96        13.84        13.94        29.03 
TCGA-XX-A89A 
       16.04 

  AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE 
                          0.03                           0.03 
  AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE 
                        211.56                         234.28 
  AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE 
                         22.32                          25.41 
[1] "0.0 - 211.6 (22.3)" "0.0 - 234.3 (25.4)"
[1] "hr=" "1.3"
D7V2, continuous
                                vv
clus                             STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  AMP PEAK  7(5P15.33) MUTATED        31       22        2        1       138
  AMP PEAK  7(5P15.33) WILD-TYPE      58       59        6        2       215
                                vv
clus                             STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  AMP PEAK  7(5P15.33) MUTATED          88         1         58         10
  AMP PEAK  7(5P15.33) WILD-TYPE       157         1         92         19
                                vv
clus                             STAGE IIIC STAGE IV STAGE TIS STAGE X
  AMP PEAK  7(5P15.33) MUTATED           24        8         0       3
  AMP PEAK  7(5P15.33) WILD-TYPE         39       12         1      10
D7V3, multiclass
            clus
vv           AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  STAGE I                              31                             58
  STAGE IA                             22                             59
  STAGE IB                              2                              6
  STAGE II                              1                              2
  STAGE IIA                           138                            215
  STAGE IIB                            88                            157
  STAGE III                             1                              1
  STAGE IIIA                           58                             92
  STAGE IIIB                           10                             19
  STAGE IIIC                           24                             39
  STAGE IV                              8                             12
  STAGE TIS                             0                              1
  STAGE X                               3                             10
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              T1  T2  T3  T4
  AMP PEAK  7(5P15.33) MUTATED    84 235  50  16
  AMP PEAK  7(5P15.33) WILD-TYPE 188 381  80  24
D7V4, multiclass
    clus
vv   AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  T1                           84                            188
  T2                          235                            381
  T3                           50                             80
  T4                           16                             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              N0  N1  N2  N3
  AMP PEAK  7(5P15.33) MUTATED   196 107  53  26
  AMP PEAK  7(5P15.33) WILD-TYPE 305 243  64  49
D7V5, multiclass
    clus
vv   AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  N0                          196                            305
  N1                          107                            243
  N2                           53                             64
  N3                           26                             49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D7V6, binary
                                cls
clus                               0   1
  AMP PEAK  7(5P15.33) MUTATED   333   8
  AMP PEAK  7(5P15.33) WILD-TYPE 546  13
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  7(5P15.33) MUTATED    333    8
  AMP PEAK  7(5P15.33) WILD-TYPE  546   13
   clus
vv  AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  0                          333                            546
  1                            8                             13
[1] 2 2
[1] FALSE
D7V7, binary
                                cls
clus                               0   1
  AMP PEAK  7(5P15.33) MUTATED   382   5
  AMP PEAK  7(5P15.33) WILD-TYPE 669   6
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  7(5P15.33) MUTATED    382    5
  AMP PEAK  7(5P15.33) WILD-TYPE  669    6
        clus
vv       AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  FEMALE                          382                            669
  MALE                              5                              6
[1] 2 2
[1] FALSE
                                vv
clus                             INFILTRATING CARCINOMA NOS
  AMP PEAK  7(5P15.33) MUTATED                            1
  AMP PEAK  7(5P15.33) WILD-TYPE                          0
                                vv
clus                             INFILTRATING DUCTAL CARCINOMA
  AMP PEAK  7(5P15.33) MUTATED                             293
  AMP PEAK  7(5P15.33) WILD-TYPE                           470
                                vv
clus                             INFILTRATING LOBULAR CARCINOMA
  AMP PEAK  7(5P15.33) MUTATED                               60
  AMP PEAK  7(5P15.33) WILD-TYPE                            132
                                vv
clus                             MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  AMP PEAK  7(5P15.33) MUTATED                     2                     3
  AMP PEAK  7(5P15.33) WILD-TYPE                   4                     1
                                vv
clus                             MIXED HISTOLOGY (PLEASE SPECIFY)
  AMP PEAK  7(5P15.33) MUTATED                                  9
  AMP PEAK  7(5P15.33) WILD-TYPE                               21
                                vv
clus                             MUCINOUS CARCINOMA OTHER  SPECIFY
  AMP PEAK  7(5P15.33) MUTATED                    2             16
  AMP PEAK  7(5P15.33) WILD-TYPE                 15             32
D7V8, multiclass
                                  clus
vv                                 AMP PEAK  7(5P15.33) MUTATED
  INFILTRATING CARCINOMA NOS                                  1
  INFILTRATING DUCTAL CARCINOMA                             293
  INFILTRATING LOBULAR CARCINOMA                             60
  MEDULLARY CARCINOMA                                         2
  METAPLASTIC CARCINOMA                                       3
  MIXED HISTOLOGY (PLEASE SPECIFY)                            9
  MUCINOUS CARCINOMA                                          2
  OTHER  SPECIFY                                             16
                                  clus
vv                                 AMP PEAK  7(5P15.33) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                    0
  INFILTRATING DUCTAL CARCINOMA                               470
  INFILTRATING LOBULAR CARCINOMA                              132
  MEDULLARY CARCINOMA                                           4
  METAPLASTIC CARCINOMA                                         1
  MIXED HISTOLOGY (PLEASE SPECIFY)                             21
  MUCINOUS CARCINOMA                                           15
  OTHER  SPECIFY                                               32
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D7V9, binary
                                cls
clus                               0   1
  AMP PEAK  7(5P15.33) MUTATED   118 269
  AMP PEAK  7(5P15.33) WILD-TYPE 170 505
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  7(5P15.33) MUTATED    118  269
  AMP PEAK  7(5P15.33) WILD-TYPE  170  505
     clus
vv    AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  NO                           118                            170
  YES                          269                            505
[1] 2 2
[1] FALSE
D7V10, continuous
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK  7(5P15.33) MUTATED                                  1    16
  AMP PEAK  7(5P15.33) WILD-TYPE                                0    44
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK  7(5P15.33) MUTATED                          61   267
  AMP PEAK  7(5P15.33) WILD-TYPE                       109   469
D7V11, multiclass
                                  clus
vv                                 AMP PEAK  7(5P15.33) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            1
  ASIAN                                                      16
  BLACK OR AFRICAN AMERICAN                                  61
  WHITE                                                     267
                                  clus
vv                                 AMP PEAK  7(5P15.33) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              0
  ASIAN                                                        44
  BLACK OR AFRICAN AMERICAN                                   109
  WHITE                                                       469
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D7V12, binary
                                cls
clus                               0   1
  AMP PEAK  7(5P15.33) MUTATED    11 315
  AMP PEAK  7(5P15.33) WILD-TYPE  27 543
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  7(5P15.33) MUTATED     11  315
  AMP PEAK  7(5P15.33) WILD-TYPE   27  543
                        clus
vv                       AMP PEAK  7(5P15.33) MUTATED
  HISPANIC OR LATINO                               11
  NOT HISPANIC OR LATINO                          315
                        clus
vv                       AMP PEAK  7(5P15.33) WILD-TYPE
  HISPANIC OR LATINO                                 27
  NOT HISPANIC OR LATINO                            543
[1] 2 2
[1] FALSE

Clustering(8) Variable = AMP PEAK  8(6P23) MUTATION ANALYSIS
D8V1, survival
                             sevent
clus2                           0   1
  AMP PEAK  8(6P23) MUTATED   257  34
  AMP PEAK  8(6P23) WILD-TYPE 659  94
  AMP PEAK  8(6P23) MUTATED AMP PEAK  8(6P23) WILD-TYPE 
                        291                         753 
  AMP PEAK  8(6P23) MUTATED AMP PEAK  8(6P23) WILD-TYPE 
                         34                          94 
$`AMP PEAK  8(6P23) MUTATED`
TCGA-3C-AAAU TCGA-3C-AALJ TCGA-5T-A9QA TCGA-A1-A0SK TCGA-A1-A0SO TCGA-A2-A04P 
      129.14        42.81         9.96        31.79        28.01        18.02 
TCGA-A2-A04T TCGA-A2-A04X TCGA-A2-A0CM TCGA-A2-A0CT TCGA-A2-A0CX TCGA-A2-A0D0 
       73.84        55.43        24.79        75.25        56.81        67.33 
TCGA-A2-A0D2 TCGA-A2-A0EQ TCGA-A2-A0ET TCGA-A2-A0EV TCGA-A2-A0EY TCGA-A2-A0T0 
       33.76        79.76        35.05        31.82        63.29        17.52 
TCGA-A2-A0T2 TCGA-A2-A0T7 TCGA-A2-A0YE TCGA-A2-A0YG TCGA-A2-A0YJ TCGA-A2-A0YM 
        8.38        20.75        18.21        21.90        18.61        31.73 
TCGA-A2-A0YT TCGA-A2-A1FW TCGA-A2-A1FX TCGA-A2-A25B TCGA-A2-A25C TCGA-A2-A25D 
       23.77        17.36        60.72        42.44        17.19        18.15 
TCGA-A2-A3XS TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX TCGA-A2-A3XY TCGA-A2-A3Y0 
       33.93        32.75        49.48        47.31        34.98        38.37 
TCGA-A2-A4RW TCGA-A2-A4S1 TCGA-A7-A0CD TCGA-A7-A0CE TCGA-A7-A0CJ TCGA-A7-A0DA 
        7.30        26.96        38.30        35.31        30.61        35.67 
TCGA-A7-A0DC TCGA-A7-A13D TCGA-A7-A13F TCGA-A7-A26I TCGA-A7-A26J TCGA-A7-A425 
       29.79        31.73        25.15        21.73        20.61        14.70 
TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF TCGA-A7-A56D TCGA-A7-A6VV TCGA-A8-A06O 
       14.50        21.17        17.92        14.73        10.29        13.02 
TCGA-A8-A06R TCGA-A8-A06X TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A07F TCGA-A8-A07I 
       17.98        31.00        17.03        53.98        18.97        14.01 
TCGA-A8-A07J TCGA-A8-A07R TCGA-A8-A07U TCGA-A8-A07W TCGA-A8-A08B TCGA-A8-A08C 
       12.00         8.98        24.99         9.99        38.01        28.96 
TCGA-A8-A08F TCGA-A8-A08P TCGA-A8-A08R TCGA-A8-A08S TCGA-A8-A08X TCGA-A8-A092 
       33.01        31.00         0.99        33.01        43.00        30.97 
TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09C TCGA-A8-A09E TCGA-A8-A09N TCGA-A8-A09Q 
        9.99        12.00         1.02        49.05         1.02        25.02 
TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23E TCGA-AC-A2BK TCGA-AC-A2QH TCGA-AC-A3W5 
       38.04         0.95         2.37        38.53        33.04        16.57 
TCGA-AC-A5XS TCGA-AC-A62X TCGA-AC-A6IW TCGA-AC-A7VC TCGA-AC-A8OQ TCGA-AN-A03Y 
        1.55        13.71        13.58         0.03         1.12         0.33 
TCGA-AN-A041 TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AT 
        0.23         2.96         1.78         1.71         9.96         0.33 
TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FW TCGA-AN-A0FX TCGA-AN-A0FY 
        7.96         7.00         7.59         0.36         0.33         0.33 
TCGA-AN-A0XN TCGA-AO-A03L TCGA-AO-A03M TCGA-AO-A03N TCGA-AO-A0J4 TCGA-AO-A0JD 
        0.33        80.28        61.35        66.77        52.18        72.00 
TCGA-AO-A0JG TCGA-AO-A0JL TCGA-AO-A0JM TCGA-AO-A124 TCGA-AO-A129 TCGA-AO-A12B 
       26.24        55.33        71.80       102.58       108.03        98.27 
TCGA-AO-A1KS TCGA-AQ-A0Y5 TCGA-AQ-A7U7 TCGA-AR-A0TP TCGA-AR-A0TR TCGA-AR-A0TS 
        0.53         5.65        19.20       111.32         5.26        74.79 
TCGA-AR-A0TV TCGA-AR-A0TW TCGA-AR-A0U0 TCGA-AR-A1AH TCGA-AR-A1AU TCGA-AR-A1AV 
       42.35        98.93        65.36        75.55        76.21        61.28 
TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24Q TCGA-AR-A250 TCGA-AR-A255 TCGA-AR-A2LL 
       33.73       160.90       104.28        89.00        58.92        66.15 
TCGA-AR-A2LR TCGA-B6-A0I2 TCGA-B6-A0I9 TCGA-B6-A0IA TCGA-B6-A0IJ TCGA-B6-A0IN 
       20.38       143.38        12.13       220.90       176.98        84.59 
TCGA-B6-A0IO TCGA-B6-A0RG TCGA-B6-A0RO TCGA-B6-A0RS TCGA-B6-A0RU TCGA-B6-A0WT 
      110.14        68.45       162.05       100.70       131.21       188.68 
TCGA-B6-A0WY TCGA-B6-A0X1 TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A402 TCGA-B6-A408 
      113.79       186.48        43.59       101.52        74.99        68.12 
TCGA-B6-A40C TCGA-BH-A0AV TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0B3 TCGA-BH-A0B6 
       71.15        59.84        20.45        25.55        39.55        56.94 
TCGA-BH-A0BA TCGA-BH-A0BF TCGA-BH-A0BG TCGA-BH-A0BL TCGA-BH-A0BP TCGA-BH-A0BT 
       37.22        25.71        24.85        44.05        48.69        45.57 
TCGA-BH-A0BZ TCGA-BH-A0C1 TCGA-BH-A0DH TCGA-BH-A0DQ TCGA-BH-A0EB TCGA-BH-A0H7 
       49.05        44.02        38.01         3.22        24.49        23.08 
TCGA-BH-A0HQ TCGA-BH-A0RX TCGA-BH-A0W7 TCGA-BH-A0WA TCGA-BH-A18K TCGA-BH-A18L 
       36.85         5.59        44.81        23.05        90.84        26.66 
TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A1EN TCGA-BH-A1EO TCGA-BH-A1EV TCGA-BH-A1F2 
        7.36        51.39        69.93        91.99        12.00        31.53 
TCGA-BH-A1FC TCGA-BH-A1FE TCGA-BH-A1FN TCGA-BH-A203 TCGA-BH-A208 TCGA-BH-A209 
      114.15        74.73        72.07        38.60        57.83       130.16 
TCGA-BH-A42V TCGA-BH-A6R8 TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12W TCGA-C8-A12X 
        8.94         9.63        11.77        12.66        12.66        12.66 
TCGA-C8-A130 TCGA-C8-A132 TCGA-C8-A138 TCGA-C8-A1HG TCGA-C8-A1HJ TCGA-C8-A1HK 
        3.16         1.87         4.08        11.34         0.16        12.03 
TCGA-C8-A1HM TCGA-D8-A13Z TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A1J8 TCGA-D8-A1JB 
        2.30        20.88        13.97        14.17        14.17        18.71 
TCGA-D8-A1JF TCGA-D8-A1JL TCGA-D8-A1X5 TCGA-D8-A1X9 TCGA-D8-A1XJ TCGA-D8-A1XK 
       12.03        20.09        18.58        23.90        21.83        14.50 
TCGA-D8-A1XL TCGA-D8-A1XQ TCGA-D8-A1XT TCGA-D8-A1XY TCGA-D8-A1XZ TCGA-D8-A1Y3 
       19.92        16.41         6.35        16.54        15.32        14.14 
TCGA-D8-A27F TCGA-D8-A27R TCGA-D8-A27V TCGA-E2-A10C TCGA-E2-A14X TCGA-E2-A14Z 
       16.04        10.09        12.53        40.11        31.96        18.51 
TCGA-E2-A159 TCGA-E2-A15A TCGA-E2-A15D TCGA-E2-A15M TCGA-E2-A15S TCGA-E2-A1B0 
       25.05        23.34        17.29        11.05        14.07        53.62 
TCGA-E2-A1IG TCGA-E2-A1II TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1LG TCGA-E2-A1LI 
       32.78        33.70         3.88        22.19        18.87       102.61 
TCGA-E2-A1LL TCGA-E2-A2P5 TCGA-E2-A56Z TCGA-E2-A573 TCGA-E2-A574 TCGA-E2-A9RU 
       43.04        16.93         8.28        34.92        26.56        12.85 
TCGA-E9-A1N8 TCGA-E9-A1N9 TCGA-E9-A1NA TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1R7 
       12.00        13.12        36.56        12.59        35.77        21.21 
TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A22D TCGA-E9-A244 TCGA-E9-A295 TCGA-E9-A3HO 
       34.65         6.58        41.03         0.69         0.72        26.07 
TCGA-E9-A54Y TCGA-E9-A5UO TCGA-EW-A1J6 TCGA-EW-A1OV TCGA-EW-A1OW TCGA-EW-A1OZ 
       23.84        13.81        28.77        25.94        22.82        40.41 
TCGA-EW-A1P4 TCGA-EW-A1P6 TCGA-EW-A1P8 TCGA-EW-A1PF TCGA-EW-A1PH TCGA-EW-A2FV 
       29.82        18.48         7.86        14.43        19.96        25.91 
TCGA-EW-A3U0 TCGA-EW-A423 TCGA-GM-A2DF TCGA-HN-A2NL TCGA-LD-A7W5 TCGA-LL-A441 
       17.49        10.16        70.85         2.60         7.10        11.44 
TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A6FR TCGA-LL-A73Y TCGA-LL-A740 TCGA-LL-A7SZ 
       15.32        14.70        16.08        15.68        14.50        14.70 
TCGA-LL-A7T0 TCGA-OL-A5DA TCGA-OL-A5RW TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66I 
       12.36        58.62        36.36        22.32        20.38        23.47 
TCGA-OL-A6VO TCGA-PE-A5DC TCGA-PE-A5DE TCGA-PL-A8LZ TCGA-S3-A6ZF TCGA-S3-AA0Z 
       28.21        47.01        86.96         9.93        16.50        16.80 
TCGA-S3-AA10 TCGA-UL-AAZ6 TCGA-Z7-A8R5 
       15.39        17.03       108.07 

$`AMP PEAK  8(6P23) WILD-TYPE`
TCGA-3C-AALI TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT0 TCGA-5L-AAT1 TCGA-A1-A0SB 
      131.67        40.14        11.44        48.56        48.36         8.52 
TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI 
       14.37        43.43        48.10        14.27        47.24        20.88 
TCGA-A1-A0SJ TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SP TCGA-A1-A0SQ TCGA-A2-A04N 
       13.68         7.96        39.32        19.20        18.21       104.81 
TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04U TCGA-A2-A04V TCGA-A2-A04W TCGA-A2-A04Y 
       78.41       121.94        87.25        63.12       101.98        36.13 
TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CQ TCGA-A2-A0CR 
      136.73        99.12       114.81        92.48        88.60       107.93 
TCGA-A2-A0CS TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0D1 TCGA-A2-A0D3 
       75.55         5.19        98.99       107.93        34.55        61.58 
TCGA-A2-A0D4 TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0ER 
       25.22       101.72       134.40        80.28       107.61        74.40 
TCGA-A2-A0ES TCGA-A2-A0EU TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0ST TCGA-A2-A0SU 
       72.00        34.29        61.94        24.72        99.19        54.64 
TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0SX TCGA-A2-A0SY TCGA-A2-A0T1 TCGA-A2-A0T3 
       27.12        44.88        50.43        44.28        17.13        49.84 
TCGA-A2-A0T4 TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YF 
       20.52        17.46        18.90        32.55        25.28        50.47 
TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A1FV TCGA-A2-A1FZ 
       21.67        49.48        19.33        48.46        23.47        22.45 
TCGA-A2-A1G0 TCGA-A2-A1G1 TCGA-A2-A1G4 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25A 
       20.25        19.20        19.56        16.47        52.47       107.70 
TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD TCGA-A2-A3XT TCGA-A2-A3XU 
      105.34        10.59        20.88        39.65        83.01        29.98 
TCGA-A2-A3XZ TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S2 TCGA-A2-A4S3 
       50.37        24.39        21.30        23.21        21.14        21.90 
TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0D9 TCGA-A7-A0DB TCGA-A7-A13E TCGA-A7-A13G 
       34.29        35.47        37.45        33.11        20.19        23.61 
TCGA-A7-A13H TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26G TCGA-A7-A26H TCGA-A7-A2KD 
       29.56        31.36        24.26        23.74        23.80        22.32 
TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3J1 TCGA-A7-A3RF TCGA-A7-A426 
       11.34        10.59        10.29        11.28        13.41        11.97 
TCGA-A7-A4SA TCGA-A7-A4SB TCGA-A7-A5ZV TCGA-A7-A5ZW TCGA-A7-A5ZX TCGA-A7-A6VW 
       14.93        13.74        12.10        10.72        11.05         9.37 
TCGA-A7-A6VX TCGA-A7-A6VY TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06T TCGA-A8-A06U 
       10.42         8.75        13.02         1.02        53.06        29.03 
TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A079 TCGA-A8-A07B TCGA-A8-A07E TCGA-A8-A07G 
       26.01         1.02         9.01        43.00        19.99        18.97 
TCGA-A8-A07L TCGA-A8-A07O TCGA-A8-A07P TCGA-A8-A07S TCGA-A8-A07Z TCGA-A8-A082 
       32.05         9.99        10.98         7.99        45.07        18.05 
TCGA-A8-A084 TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08G TCGA-A8-A08I 
       15.06        36.95        13.02         0.99        19.96        12.00 
TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08O TCGA-A8-A08T TCGA-A8-A08Z TCGA-A8-A091 
       37.05         9.99        31.00       112.08        40.01        33.01 
TCGA-A8-A093 TCGA-A8-A095 TCGA-A8-A097 TCGA-A8-A099 TCGA-A8-A09D TCGA-A8-A09I 
       17.95        41.98        12.00         9.99        50.04        45.07 
TCGA-A8-A09K TCGA-A8-A09M TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09W 
       29.98        33.07         8.98        19.04        15.02         0.99 
TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A7 
       14.01        12.00        19.04        13.02        21.04         0.99 
TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-AC-A23G TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2BM 
       27.02        17.03        10.85         5.72         1.48        99.35 
TCGA-AC-A2FB TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2FO 
       40.57        55.43        36.99        38.79        26.04        50.70 
TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QP 
        0.92         2.27        32.45        16.31        14.83        22.19 
TCGA-AC-A3TN TCGA-AC-A3W6 TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A62V TCGA-AC-A62Y 
       14.99        19.79        23.24        24.79        11.44        17.42 
TCGA-AC-A6IV TCGA-AC-A6IX TCGA-AC-A6NO TCGA-AC-A7VB TCGA-AC-A8OP TCGA-AC-A8OR 
       18.67        12.26         1.68         8.22        20.19         1.32 
TCGA-AC-A8OS TCGA-AN-A03X TCGA-AN-A046 TCGA-AN-A049 TCGA-AN-A0AK TCGA-AN-A0AL 
        2.30         0.33         0.33         0.62         7.36         6.51 
TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FN 
        0.16         0.33         0.33         6.44         5.65         7.17 
TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FZ TCGA-AN-A0XL TCGA-AN-A0XO 
        6.28         7.04         0.33         0.33         0.33        12.33 
TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AN-A0XV 
        0.30         0.33         0.33         0.33         0.33         5.33 
TCGA-AN-A0XW TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03U 
        5.59        81.63        95.70        68.75        47.87        58.95 
TCGA-AO-A03V TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J5 TCGA-AO-A0J6 TCGA-AO-A0J7 
       29.13        32.78        21.40        26.04        37.48        20.32 
TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JC TCGA-AO-A0JE 
       22.36        53.03        21.53        50.70        50.86        76.77 
TCGA-AO-A0JF TCGA-AO-A0JI TCGA-AO-A0JJ TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 
       21.37        50.24        62.04        99.25       108.72       106.78 
TCGA-AO-A12A TCGA-AO-A12D TCGA-AO-A12E TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A12H 
       90.58        64.04        57.30        48.36        41.62        28.37 
TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KQ TCGA-AO-A1KR TCGA-AO-A1KT TCGA-AQ-A04H 
       14.73        82.62        61.87        70.39        17.79        24.79 
TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AQ-A54N TCGA-AQ-A54O 
       26.93       130.09        15.62        32.52         2.56        32.91 
TCGA-AR-A0TQ TCGA-AR-A0TT TCGA-AR-A0TX TCGA-AR-A0TY TCGA-AR-A0TZ TCGA-AR-A0U1 
       73.64        86.66        64.83        55.86       107.24       101.95 
TCGA-AR-A0U2 TCGA-AR-A0U3 TCGA-AR-A0U4 TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AK 
       83.87       114.02        85.97        61.84        52.77        51.25 
TCGA-AR-A1AL TCGA-AR-A1AM TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AQ 
       48.82        76.11        43.73        43.56        39.98        43.07 
TCGA-AR-A1AR TCGA-AR-A1AS TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A24K TCGA-AR-A24L 
       17.23        37.81        63.62        62.14        50.89        94.22 
TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24R TCGA-AR-A24S 
       96.89        78.51        84.20         2.76        87.22        97.84 
TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A24Z 
       76.01        53.36        85.35        50.96        83.77        79.00 
TCGA-AR-A251 TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A256 TCGA-AR-A2LE TCGA-AR-A2LH 
       78.48        73.18        72.76        93.83       143.21        20.25 
TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ 
       62.86        54.21        52.11        38.17        39.39        40.54 
TCGA-AR-A5QM TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I5 
       54.74        16.04        20.45        10.59        77.62       149.59 
TCGA-B6-A0IB TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0IK 
      129.57        50.70        65.72       146.50       112.37        18.77 
TCGA-B6-A0IM TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RH TCGA-B6-A0RI 
      126.12       110.93       140.88       211.56       189.01       234.28 
TCGA-B6-A0RL TCGA-B6-A0RM TCGA-B6-A0RN TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RT 
       81.17        78.02       172.96       102.77       140.48        89.46 
TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WZ 
      157.41        97.48        79.63        18.35        21.47       129.57 
TCGA-B6-A0X0 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KI TCGA-B6-A1KN 
      129.70        28.27        68.94        58.88        73.51       139.17 
TCGA-B6-A2IU TCGA-B6-A401 TCGA-B6-A40B TCGA-BH-A0AU TCGA-BH-A0AZ TCGA-BH-A0B0 
      170.17        85.35       103.63        24.53        28.50        46.95 
TCGA-BH-A0B2 TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0B7 TCGA-BH-A0B9 TCGA-BH-A0BC 
       40.83        39.16        48.36        56.98        51.68        32.02 
TCGA-BH-A0BD TCGA-BH-A0BJ TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BQ TCGA-BH-A0BR 
       18.21        21.70        61.68        35.67        27.19        53.69 
TCGA-BH-A0BS TCGA-BH-A0BV TCGA-BH-A0BW TCGA-BH-A0C0 TCGA-BH-A0C3 TCGA-BH-A0C7 
       53.95        49.94        11.67        41.75        48.13        42.90 
TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL 
       45.83        31.17        23.44        22.13        13.91        48.23 
TCGA-BH-A0DO TCGA-BH-A0DP TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX 
       17.26        15.65         2.56        38.47        67.86        47.41 
TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E6 TCGA-BH-A0E7 
       16.27         4.41        15.68        14.30         9.63        44.81 
TCGA-BH-A0E9 TCGA-BH-A0EA TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ 
       46.19        32.58        31.00        24.43        30.35        10.78 
TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H9 TCGA-BH-A0HA 
       15.16        37.78        35.51        24.56        41.00        52.96 
TCGA-BH-A0HB TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HU 
       26.50        20.38         5.85         2.50        13.61        12.89 
TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 
       51.32        27.25        50.79        23.93        24.95        42.35 
TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18M TCGA-BH-A18N 
        8.81         2.01         7.23        20.12        72.56        37.74 
TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18R TCGA-BH-A18S TCGA-BH-A18V TCGA-BH-A1ES 
       30.28        55.63        37.55        66.05        51.16       113.82 
TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EW TCGA-BH-A1EX TCGA-BH-A1EY TCGA-BH-A1F0 
       82.85        42.28        55.69        49.58        17.69        25.81 
TCGA-BH-A1F5 TCGA-BH-A1F6 TCGA-BH-A1F8 TCGA-BH-A1FB TCGA-BH-A1FD TCGA-BH-A1FG 
       89.16        97.48        24.66       120.62        33.17       122.89 
TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FM TCGA-BH-A1FR TCGA-BH-A1FU 
       36.92        63.35        55.00        45.63       144.59        72.07 
TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A204 TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 
       28.14        26.14        83.31        10.65         6.44        20.12 
TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-BH-A6R9 TCGA-BH-A8FY 
       10.52       109.28        18.64        23.51         5.26         9.70 
TCGA-BH-A8FZ TCGA-BH-A8G0 TCGA-BH-AB28 TCGA-C8-A12L TCGA-C8-A12M TCGA-C8-A12N 
       18.87        21.76         9.44        11.93        11.77        11.77 
TCGA-C8-A12O TCGA-C8-A12U TCGA-C8-A12V TCGA-C8-A12Z TCGA-C8-A131 TCGA-C8-A134 
       12.66        12.66        12.66         0.39         2.24         1.12 
TCGA-C8-A135 TCGA-C8-A137 TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HI TCGA-C8-A1HL 
        1.05         4.11        12.33        10.92        11.28        10.42 
TCGA-C8-A1HN TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A26X TCGA-C8-A26Y TCGA-C8-A26Z 
        3.25         0.30         0.23         0.36         0.43         8.28 
TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A27B 
        9.67         9.53         0.03         9.50        12.20         0.99 
TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-C8-A8HP TCGA-C8-A8HQ TCGA-C8-A8HR TCGA-C8-A9FZ 
        0.03         0.23        13.02        12.49        13.41        19.46 
TCGA-D8-A13Y TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A145 TCGA-D8-A146 TCGA-D8-A147 
       11.90        13.25        20.58        13.48        21.14        19.20 
TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JC TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JG 
       17.49        16.50        15.78        18.15        18.90        12.03 
TCGA-D8-A1JH TCGA-D8-A1JI TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JM TCGA-D8-A1JN 
       14.01        18.97        20.09        20.12        19.40        20.38 
TCGA-D8-A1JP TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X6 TCGA-D8-A1X7 
       21.01        12.20        13.32        14.70        17.79        16.73 
TCGA-D8-A1X8 TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XD TCGA-D8-A1XF 
       25.74        27.58        18.15        12.39        17.16        15.22 
TCGA-D8-A1XG TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XU 
       14.73        17.69        15.55        15.85        16.31        12.99 
TCGA-D8-A1XV TCGA-D8-A1XW TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 TCGA-D8-A27E 
       15.16        12.66        15.52         9.93        14.24        17.42 
TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27M 
       13.45        13.05        14.43         9.44        16.41        13.48 
TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27T TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A3Z6 
        4.80         0.76        13.08        12.26        33.37        18.51 
TCGA-D8-A4Z1 TCGA-D8-A73U TCGA-D8-A73W TCGA-D8-A73X TCGA-E2-A105 TCGA-E2-A107 
       21.67        16.18         8.02        12.10        43.00        34.42 
TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10E TCGA-E2-A10F 
       27.52        46.59        40.41        37.51        28.44        28.87 
TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14Q TCGA-E2-A14R TCGA-E2-A14S 
       47.15        44.68        40.96        38.24        38.60        33.17 
TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14W TCGA-E2-A14Y TCGA-E2-A150 
       33.30        43.33        34.26        32.02        28.60        25.41 
TCGA-E2-A152 TCGA-E2-A153 TCGA-E2-A154 TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A158 
       27.12        23.24        19.43        21.04        23.87        14.79 
TCGA-E2-A15C TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15I 
       22.82        20.71        21.63        18.21        12.92        17.42 
TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15O TCGA-E2-A15P TCGA-E2-A15R 
       19.40         9.04        20.58        13.02        19.56        17.06 
TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 
       14.99        60.53        53.03        33.01        32.35        28.50 
TCGA-E2-A1BC TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IH TCGA-E2-A1IJ 
       16.47        17.10        38.30        37.41        33.73        28.44 
TCGA-E2-A1IK TCGA-E2-A1IO TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L8 
       22.65        20.98        11.08        54.18        27.42        39.62 
TCGA-E2-A1L9 TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LH TCGA-E2-A1LK 
       19.66        24.59        40.47        28.90       106.75         8.75 
TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A570 TCGA-E2-A576 TCGA-E9-A1N3 TCGA-E9-A1N4 
        5.52        15.72        30.61        34.29        34.82        32.88 
TCGA-E9-A1N5 TCGA-E9-A1N6 TCGA-E9-A1NC TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1NI 
       36.82        13.48        39.55        35.24        25.84         9.86 
TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R5 
       11.90        28.27        34.95         2.56         6.12         3.02 
TCGA-E9-A1R6 TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RD TCGA-E9-A1RG 
        2.76        32.09        32.09        40.24         1.12        21.27 
TCGA-E9-A1RH TCGA-E9-A1RI TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 
       34.59        35.64        34.13        32.05        12.53        13.32 
TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A22H TCGA-E9-A243 
       39.09        22.75        12.89        23.51        20.71        17.06 
TCGA-E9-A247 TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A2JS TCGA-E9-A2JT 
       27.22         1.94         7.13        24.56        29.72         0.76 
TCGA-E9-A3Q9 TCGA-E9-A3QA TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A5FK TCGA-E9-A5FL 
       18.41        30.18        15.72        12.33        14.70         0.79 
TCGA-E9-A5UP TCGA-E9-A6HE TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ 
       14.40        15.39        12.20        39.72         8.48        18.21 
TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J5 TCGA-EW-A1OX TCGA-EW-A1OY 
       18.90        13.25        16.57        15.68        29.95        29.85 
TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P3 TCGA-EW-A1P5 TCGA-EW-A1P7 TCGA-EW-A1PA 
       41.13        39.78        52.96        23.11        30.08        18.90 
TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PG TCGA-EW-A2FR 
       19.99         6.15        13.94        10.52        34.55        55.00 
TCGA-EW-A2FS TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A424 TCGA-GI-A2C8 TCGA-GI-A2C9 
       52.73        22.09        34.03        23.51         7.40       109.87 
TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DC TCGA-GM-A2DD TCGA-GM-A2DH 
       59.57       216.76        79.10        83.34        75.02        72.10 
TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A2DO 
       85.15        86.96       115.69       106.06       101.62        85.35 
TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XL TCGA-GM-A3XN TCGA-GM-A4E0 
      110.50        38.20        43.73        69.30        66.38        72.03 
TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2OB TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LD-A66U 
       13.55        18.12        62.43        11.84        11.57        21.24 
TCGA-LD-A74U TCGA-LD-A7W6 TCGA-LD-A9QF TCGA-LL-A440 TCGA-LL-A442 TCGA-LL-A50Y 
       13.22        13.28        10.62        24.95        10.95        25.05 
TCGA-LL-A5YL TCGA-LL-A5YO TCGA-LL-A5YP TCGA-LL-A6FP TCGA-LL-A6FQ TCGA-LL-A73Z 
       17.06        14.47        14.79        22.26         2.63         7.46 
TCGA-LL-A8F5 TCGA-LL-A9Q3 TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D6 
       14.73        14.07        27.91        22.39         2.10        36.30 
TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5RU TCGA-OL-A5RV TCGA-OL-A5RX TCGA-OL-A5RY 
       58.52        31.99        40.08        34.92        28.87        24.72 
TCGA-OL-A66H TCGA-OL-A66J TCGA-OL-A66K TCGA-OL-A66L TCGA-OL-A66N TCGA-OL-A66O 
       26.70        65.62        41.92        42.77        26.04        17.36 
TCGA-OL-A66P TCGA-OL-A6VQ TCGA-OL-A6VR TCGA-OL-A97C TCGA-PE-A5DD TCGA-PL-A8LX 
       14.07        19.73        40.11         8.91        64.21         0.16 
TCGA-PL-A8LY TCGA-S3-A6ZG TCGA-S3-A6ZH TCGA-S3-AA11 TCGA-S3-AA12 TCGA-S3-AA14 
        0.26        13.12        16.93        13.84        15.35        14.96 
TCGA-S3-AA15 TCGA-S3-AA17 TCGA-UU-A93S TCGA-W8-A86G TCGA-WT-AB41 TCGA-WT-AB44 
       13.84        13.94         3.81        11.41        52.96        29.03 
TCGA-XX-A899 TCGA-XX-A89A TCGA-Z7-A8R6 
       15.35        16.04       107.05 

  AMP PEAK  8(6P23) MUTATED AMP PEAK  8(6P23) WILD-TYPE 
                       0.03                        0.03 
  AMP PEAK  8(6P23) MUTATED AMP PEAK  8(6P23) WILD-TYPE 
                     220.90                      234.28 
  AMP PEAK  8(6P23) MUTATED AMP PEAK  8(6P23) WILD-TYPE 
                      23.84                       24.59 
[1] "0.0 - 220.9 (23.8)" "0.0 - 234.3 (24.6)"
[1] "hr=" "1"  
D8V2, continuous
                             vv
clus                          STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  AMP PEAK  8(6P23) MUTATED        21       13        2        0       101
  AMP PEAK  8(6P23) WILD-TYPE      68       68        6        3       252
                             vv
clus                          STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  AMP PEAK  8(6P23) MUTATED          71         0         45         11
  AMP PEAK  8(6P23) WILD-TYPE       174         2        105         18
                             vv
clus                          STAGE IIIC STAGE IV STAGE TIS STAGE X
  AMP PEAK  8(6P23) MUTATED           20        5         0       4
  AMP PEAK  8(6P23) WILD-TYPE         43       15         1       9
D8V3, multiclass
            clus
vv           AMP PEAK  8(6P23) MUTATED AMP PEAK  8(6P23) WILD-TYPE
  STAGE I                           21                          68
  STAGE IA                          13                          68
  STAGE IB                           2                           6
  STAGE II                           0                           3
  STAGE IIA                        101                         252
  STAGE IIB                         71                         174
  STAGE III                          0                           2
  STAGE IIIA                        45                         105
  STAGE IIIB                        11                          18
  STAGE IIIC                        20                          43
  STAGE IV                           5                          15
  STAGE TIS                          0                           1
  STAGE X                            4                           9
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                           T1  T2  T3  T4
  AMP PEAK  8(6P23) MUTATED    53 195  33  12
  AMP PEAK  8(6P23) WILD-TYPE 219 421  97  28
D8V4, multiclass
    clus
vv   AMP PEAK  8(6P23) MUTATED AMP PEAK  8(6P23) WILD-TYPE
  T1                        53                         219
  T2                       195                         421
  T3                        33                          97
  T4                        12                          28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                           N0  N1  N2  N3
  AMP PEAK  8(6P23) MUTATED   135  89  41  21
  AMP PEAK  8(6P23) WILD-TYPE 366 261  76  54
D8V5, multiclass
    clus
vv   AMP PEAK  8(6P23) MUTATED AMP PEAK  8(6P23) WILD-TYPE
  N0                       135                         366
  N1                        89                         261
  N2                        41                          76
  N3                        21                          54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D8V6, binary
                             cls
clus                            0   1
  AMP PEAK  8(6P23) MUTATED   247   5
  AMP PEAK  8(6P23) WILD-TYPE 632  16
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  8(6P23) MUTATED    247    5
  AMP PEAK  8(6P23) WILD-TYPE  632   16
   clus
vv  AMP PEAK  8(6P23) MUTATED AMP PEAK  8(6P23) WILD-TYPE
  0                       247                         632
  1                         5                          16
[1] 2 2
[1] FALSE
D8V7, binary
                             cls
clus                            0   1
  AMP PEAK  8(6P23) MUTATED   293   1
  AMP PEAK  8(6P23) WILD-TYPE 758  10
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  8(6P23) MUTATED    293    1
  AMP PEAK  8(6P23) WILD-TYPE  758   10
        clus
vv       AMP PEAK  8(6P23) MUTATED AMP PEAK  8(6P23) WILD-TYPE
  FEMALE                       293                         758
  MALE                           1                          10
[1] 2 2
[1] FALSE
                             vv
clus                          INFILTRATING CARCINOMA NOS
  AMP PEAK  8(6P23) MUTATED                            0
  AMP PEAK  8(6P23) WILD-TYPE                          1
                             vv
clus                          INFILTRATING DUCTAL CARCINOMA
  AMP PEAK  8(6P23) MUTATED                             242
  AMP PEAK  8(6P23) WILD-TYPE                           521
                             vv
clus                          INFILTRATING LOBULAR CARCINOMA
  AMP PEAK  8(6P23) MUTATED                               25
  AMP PEAK  8(6P23) WILD-TYPE                            167
                             vv
clus                          MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  AMP PEAK  8(6P23) MUTATED                     4                     1
  AMP PEAK  8(6P23) WILD-TYPE                   2                     3
                             vv
clus                          MIXED HISTOLOGY (PLEASE SPECIFY)
  AMP PEAK  8(6P23) MUTATED                                  5
  AMP PEAK  8(6P23) WILD-TYPE                               25
                             vv
clus                          MUCINOUS CARCINOMA OTHER  SPECIFY
  AMP PEAK  8(6P23) MUTATED                    2             14
  AMP PEAK  8(6P23) WILD-TYPE                 15             34
D8V8, multiclass
                                  clus
vv                                 AMP PEAK  8(6P23) MUTATED
  INFILTRATING CARCINOMA NOS                               0
  INFILTRATING DUCTAL CARCINOMA                          242
  INFILTRATING LOBULAR CARCINOMA                          25
  MEDULLARY CARCINOMA                                      4
  METAPLASTIC CARCINOMA                                    1
  MIXED HISTOLOGY (PLEASE SPECIFY)                         5
  MUCINOUS CARCINOMA                                       2
  OTHER  SPECIFY                                          14
                                  clus
vv                                 AMP PEAK  8(6P23) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                 1
  INFILTRATING DUCTAL CARCINOMA                            521
  INFILTRATING LOBULAR CARCINOMA                           167
  MEDULLARY CARCINOMA                                        2
  METAPLASTIC CARCINOMA                                      3
  MIXED HISTOLOGY (PLEASE SPECIFY)                          25
  MUCINOUS CARCINOMA                                        15
  OTHER  SPECIFY                                            34
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D8V9, binary
                             cls
clus                            0   1
  AMP PEAK  8(6P23) MUTATED    88 206
  AMP PEAK  8(6P23) WILD-TYPE 200 568
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  8(6P23) MUTATED     88  206
  AMP PEAK  8(6P23) WILD-TYPE  200  568
     clus
vv    AMP PEAK  8(6P23) MUTATED AMP PEAK  8(6P23) WILD-TYPE
  NO                         88                         200
  YES                       206                         568
[1] 2 2
[1] FALSE
D8V10, continuous
                             vv
clus                          AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK  8(6P23) MUTATED                                  0    15
  AMP PEAK  8(6P23) WILD-TYPE                                1    45
                             vv
clus                          BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK  8(6P23) MUTATED                          65   185
  AMP PEAK  8(6P23) WILD-TYPE                       105   551
D8V11, multiclass
                                  clus
vv                                 AMP PEAK  8(6P23) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                         0
  ASIAN                                                   15
  BLACK OR AFRICAN AMERICAN                               65
  WHITE                                                  185
                                  clus
vv                                 AMP PEAK  8(6P23) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                           1
  ASIAN                                                     45
  BLACK OR AFRICAN AMERICAN                                105
  WHITE                                                    551
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D8V12, binary
                             cls
clus                            0   1
  AMP PEAK  8(6P23) MUTATED    11 232
  AMP PEAK  8(6P23) WILD-TYPE  27 626
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  8(6P23) MUTATED     11  232
  AMP PEAK  8(6P23) WILD-TYPE   27  626
                        clus
vv                       AMP PEAK  8(6P23) MUTATED AMP PEAK  8(6P23) WILD-TYPE
  HISPANIC OR LATINO                            11                          27
  NOT HISPANIC OR LATINO                       232                         626
[1] 2 2
[1] FALSE

Clustering(9) Variable = AMP PEAK  9(6Q21) MUTATION ANALYSIS
D9V1, survival
                             sevent
clus2                           0   1
  AMP PEAK  9(6Q21) MUTATED   169  28
  AMP PEAK  9(6Q21) WILD-TYPE 747 100
  AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE 
                        197                         847 
  AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE 
                         28                         100 
$`AMP PEAK  9(6Q21) MUTATED`
TCGA-A1-A0SJ TCGA-A1-A0SK TCGA-A1-A0SO TCGA-A1-A0SP TCGA-A2-A04V TCGA-A2-A04W 
       13.68        31.79        28.01        19.20        63.12       101.98 
TCGA-A2-A0CM TCGA-A2-A0D0 TCGA-A2-A0D2 TCGA-A2-A0EQ TCGA-A2-A0EY TCGA-A2-A0ST 
       24.79        67.33        33.76        79.76        63.29        99.19 
TCGA-A2-A0T0 TCGA-A2-A0T2 TCGA-A2-A0YE TCGA-A2-A0YJ TCGA-A2-A1G1 TCGA-A2-A3XT 
       17.52         8.38        18.21        18.61        19.20        83.01 
TCGA-A2-A3XX TCGA-A2-A3XY TCGA-A2-A4RX TCGA-A2-A4S1 TCGA-A7-A0CE TCGA-A7-A0DA 
       47.31        34.98        24.39        26.96        35.31        35.67 
TCGA-A7-A0DC TCGA-A7-A425 TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF TCGA-A7-A5ZV 
       29.79        14.70        14.50        21.17        17.92        12.10 
TCGA-A8-A06U TCGA-A8-A06X TCGA-A8-A075 TCGA-A8-A07F TCGA-A8-A07R TCGA-A8-A084 
       29.03        31.00        17.03        18.97         8.98        15.06 
TCGA-A8-A08B TCGA-A8-A08C TCGA-A8-A08L TCGA-A8-A08P TCGA-A8-A08R TCGA-A8-A08S 
       38.01        28.96         9.99        31.00         0.99        33.01 
TCGA-A8-A09B TCGA-A8-A09N TCGA-A8-A0AB TCGA-AC-A23C TCGA-AC-A23E TCGA-AC-A62X 
       12.00         1.02        17.03         0.95         2.37        13.71 
TCGA-AC-A7VC TCGA-AN-A03Y TCGA-AN-A04C TCGA-AN-A0AJ TCGA-AN-A0AM TCGA-AN-A0AR 
        0.03         0.33         1.78         9.96         0.16         0.33 
TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FY TCGA-AN-A0XN TCGA-AN-A0XU TCGA-AN-A0XW 
        7.96         7.00         0.33         0.33         0.33         5.59 
TCGA-AO-A03O TCGA-AO-A0J4 TCGA-AO-A124 TCGA-AO-A129 TCGA-AO-A12B TCGA-AO-A12G 
       81.63        52.18       102.58       108.03        98.27        41.62 
TCGA-AO-A1KR TCGA-AO-A1KS TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A0Y5 TCGA-AR-A0TS 
       70.39         0.53        26.93       130.09         5.65        74.79 
TCGA-AR-A0TT TCGA-AR-A0TV TCGA-AR-A0TW TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A1AI 
       86.66        42.35        98.93        65.36       101.95        61.84 
TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24Q TCGA-AR-A251 
       76.21        61.28        33.73       160.90       104.28        78.48 
TCGA-AR-A256 TCGA-AR-A2LL TCGA-AR-A2LR TCGA-B6-A0I9 TCGA-B6-A0IO TCGA-B6-A0RS 
       93.83        66.15        20.38        12.13       110.14       100.70 
TCGA-B6-A402 TCGA-BH-A0AV TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0B3 TCGA-BH-A0B6 
       74.99        59.84        20.45        25.55        39.55        56.94 
TCGA-BH-A0BF TCGA-BH-A0BG TCGA-BH-A0BL TCGA-BH-A0C1 TCGA-BH-A0DZ TCGA-BH-A0E6 
       25.71        24.85        44.05        44.02        16.27         9.63 
TCGA-BH-A0EB TCGA-BH-A0HQ TCGA-BH-A18Q TCGA-BH-A18U TCGA-BH-A1EO TCGA-BH-A1EV 
       24.49        36.85        55.63        51.39        91.99        12.00 
TCGA-BH-A1F0 TCGA-BH-A1F6 TCGA-BH-A1FE TCGA-BH-A1FN TCGA-BH-A203 TCGA-BH-A208 
       25.81        97.48        74.73        72.07        38.60        57.83 
TCGA-BH-A42V TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-C8-A12L TCGA-C8-A12Q TCGA-C8-A130 
        8.94        18.64        23.51        11.93        12.66         3.16 
TCGA-C8-A137 TCGA-C8-A1HG TCGA-C8-A1HM TCGA-C8-A278 TCGA-C8-A27B TCGA-C8-A8HP 
        4.11        11.34         2.30         9.50         0.99        13.02 
TCGA-D8-A13Z TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A147 TCGA-D8-A1J8 TCGA-D8-A1JG 
       20.88        13.97        14.17        19.20        14.17        12.03 
TCGA-D8-A1JJ TCGA-D8-A1JL TCGA-D8-A1JP TCGA-D8-A1X5 TCGA-D8-A1XD TCGA-D8-A1XJ 
       20.09        20.09        21.01        18.58        17.16        21.83 
TCGA-D8-A1XK TCGA-D8-A1XQ TCGA-D8-A1XY TCGA-D8-A1XZ TCGA-D8-A27F TCGA-D8-A27V 
       14.50        16.41        16.54        15.32        16.04        12.53 
TCGA-E2-A10C TCGA-E2-A14P TCGA-E2-A14R TCGA-E2-A14T TCGA-E2-A14V TCGA-E2-A14X 
       40.11        40.96        38.60        33.30        34.26        31.96 
TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A155 TCGA-E2-A159 TCGA-E2-A15M TCGA-E2-A1B0 
       18.51        25.41        21.04        25.05        11.05        53.62 
TCGA-E2-A1IE TCGA-E2-A1II TCGA-E2-A1L7 TCGA-E2-A1LH TCGA-E2-A2P5 TCGA-E2-A573 
       38.30        33.70        27.42       106.75        16.93        34.92 
TCGA-E2-A574 TCGA-E2-A9RU TCGA-E9-A1N8 TCGA-E9-A1N9 TCGA-E9-A1RF TCGA-E9-A248 
       26.56        12.85        12.00        13.12         6.58         1.94 
TCGA-E9-A295 TCGA-E9-A3HO TCGA-E9-A3QA TCGA-EW-A1OV TCGA-EW-A1OW TCGA-EW-A1P4 
        0.72        26.07        30.18        25.94        22.82        29.82 
TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1P8 TCGA-EW-A3U0 TCGA-EW-A423 TCGA-GI-A2C9 
       18.48        30.08         7.86        17.49        10.16       109.87 
TCGA-GM-A2DB TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A3XL TCGA-HN-A2NL TCGA-LD-A7W5 
       79.10        70.85        72.10        69.30         2.60         7.10 
TCGA-LL-A5YN TCGA-LL-A6FR TCGA-LL-A73Y TCGA-LL-A73Z TCGA-LL-A7T0 TCGA-OL-A5DA 
       14.70        16.08        15.68         7.46        12.36        58.62 
TCGA-OL-A5RW TCGA-OL-A5S0 TCGA-PL-A8LZ TCGA-S3-AA0Z TCGA-Z7-A8R5 
       36.36        20.38         9.93        16.80       108.07 

$`AMP PEAK  9(6Q21) WILD-TYPE`
TCGA-3C-AAAU TCGA-3C-AALI TCGA-3C-AALJ TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT0 
      129.14       131.67        42.81        40.14        11.44        48.56 
TCGA-5L-AAT1 TCGA-5T-A9QA TCGA-A1-A0SB TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF 
       48.36         9.96         8.52        14.37        43.43        48.10 
TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SQ 
       14.27        47.24        20.88         7.96        39.32        18.21 
TCGA-A2-A04N TCGA-A2-A04P TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04U 
      104.81        18.02        78.41       121.94        73.84        87.25 
TCGA-A2-A04X TCGA-A2-A04Y TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CO TCGA-A2-A0CP 
       55.43        36.13       136.73        99.12       114.81        92.48 
TCGA-A2-A0CQ TCGA-A2-A0CR TCGA-A2-A0CS TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV 
       88.60       107.93        75.55        75.25         5.19        98.99 
TCGA-A2-A0CW TCGA-A2-A0CX TCGA-A2-A0D1 TCGA-A2-A0D3 TCGA-A2-A0D4 TCGA-A2-A0EM 
      107.93        56.81        34.55        61.58        25.22       101.72 
TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0ER TCGA-A2-A0ES TCGA-A2-A0ET 
      134.40        80.28       107.61        74.40        72.00        35.05 
TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0SU TCGA-A2-A0SV 
       34.29        31.82        61.94        24.72        54.64        27.12 
TCGA-A2-A0SW TCGA-A2-A0SX TCGA-A2-A0SY TCGA-A2-A0T1 TCGA-A2-A0T3 TCGA-A2-A0T4 
       44.88        50.43        44.28        17.13        49.84        20.52 
TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YF 
       17.46        18.90        20.75        32.55        25.28        50.47 
TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A0YM 
       21.90        21.67        49.48        19.33        48.46        31.73 
TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1FX TCGA-A2-A1FZ TCGA-A2-A1G0 
       23.77        23.47        17.36        60.72        22.45        20.25 
TCGA-A2-A1G4 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25A TCGA-A2-A25B TCGA-A2-A25C 
       19.56        16.47        52.47       107.70        42.44        17.19 
TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD TCGA-A2-A3XS 
       18.15       105.34        10.59        20.88        39.65        33.93 
TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XZ TCGA-A2-A3Y0 TCGA-A2-A4RW 
       29.98        32.75        49.48        50.37        38.37         7.30 
TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CD TCGA-A7-A0CG 
       21.30        23.21        21.14        21.90        38.30        34.29 
TCGA-A7-A0CH TCGA-A7-A0CJ TCGA-A7-A0D9 TCGA-A7-A0DB TCGA-A7-A13D TCGA-A7-A13E 
       35.47        30.61        37.45        33.11        31.73        20.19 
TCGA-A7-A13F TCGA-A7-A13G TCGA-A7-A13H TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26G 
       25.15        23.61        29.56        31.36        24.26        23.74 
TCGA-A7-A26H TCGA-A7-A26I TCGA-A7-A26J TCGA-A7-A2KD TCGA-A7-A3IY TCGA-A7-A3IZ 
       23.80        21.73        20.61        22.32        11.34        10.59 
TCGA-A7-A3J0 TCGA-A7-A3J1 TCGA-A7-A3RF TCGA-A7-A426 TCGA-A7-A4SA TCGA-A7-A4SB 
       10.29        11.28        13.41        11.97        14.93        13.74 
TCGA-A7-A56D TCGA-A7-A5ZW TCGA-A7-A5ZX TCGA-A7-A6VV TCGA-A7-A6VW TCGA-A7-A6VX 
       14.73        10.72        11.05        10.29         9.37        10.42 
TCGA-A7-A6VY TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06R TCGA-A8-A06T 
        8.75        13.02        13.02         1.02        17.98        53.06 
TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A076 TCGA-A8-A079 TCGA-A8-A07B TCGA-A8-A07E 
       26.01         1.02        53.98         9.01        43.00        19.99 
TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07L TCGA-A8-A07O TCGA-A8-A07P 
       18.97        14.01        12.00        32.05         9.99        10.98 
TCGA-A8-A07S TCGA-A8-A07U TCGA-A8-A07W TCGA-A8-A07Z TCGA-A8-A082 TCGA-A8-A085 
        7.99        24.99         9.99        45.07        18.05        36.95 
TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08F TCGA-A8-A08G TCGA-A8-A08I TCGA-A8-A08J 
       13.02         0.99        33.01        19.96        12.00        37.05 
TCGA-A8-A08O TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A08Z TCGA-A8-A091 TCGA-A8-A092 
       31.00       112.08        43.00        40.01        33.01        30.97 
TCGA-A8-A093 TCGA-A8-A095 TCGA-A8-A097 TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09C 
       17.95        41.98        12.00         9.99         9.99         1.02 
TCGA-A8-A09D TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K TCGA-A8-A09M TCGA-A8-A09Q 
       50.04        49.05        45.07        29.98        33.07        25.02 
TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A09X TCGA-A8-A0A1 
        8.98        19.04        15.02         0.99        14.01        12.00 
TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A7 TCGA-A8-A0A9 TCGA-A8-A0AD 
       19.04        13.02        21.04         0.99        27.02        38.04 
TCGA-AC-A23G TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FB 
       10.85         5.72         1.48        38.53        99.35        40.57 
TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A2QH 
       55.43        36.99        38.79        26.04        50.70        33.04 
TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QP 
        0.92         2.27        32.45        16.31        14.83        22.19 
TCGA-AC-A3TN TCGA-AC-A3W5 TCGA-AC-A3W6 TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A5XS 
       14.99        16.57        19.79        23.24        24.79         1.55 
TCGA-AC-A62V TCGA-AC-A62Y TCGA-AC-A6IV TCGA-AC-A6IW TCGA-AC-A6IX TCGA-AC-A6NO 
       11.44        17.42        18.67        13.58        12.26         1.68 
TCGA-AC-A7VB TCGA-AC-A8OP TCGA-AC-A8OQ TCGA-AC-A8OR TCGA-AC-A8OS TCGA-AN-A03X 
        8.22        20.19         1.12         1.32         2.30         0.33 
TCGA-AN-A041 TCGA-AN-A046 TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04D TCGA-AN-A0AK 
        0.23         0.33         0.62         2.96         1.71         7.36 
TCGA-AN-A0AL TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FL 
        6.51         0.33         0.33         6.44         5.65         7.59 
TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FX 
        7.17         6.28         7.04         0.33         0.36         0.33 
TCGA-AN-A0FZ TCGA-AN-A0XL TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS 
        0.33         0.33        12.33         0.30         0.33         0.33 
TCGA-AN-A0XT TCGA-AN-A0XV TCGA-AO-A03L TCGA-AO-A03M TCGA-AO-A03N TCGA-AO-A03P 
        0.33         5.33        80.28        61.35        66.77        95.70 
TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J2 TCGA-AO-A0J3 
       68.75        47.87        58.95        29.13        32.78        21.40 
TCGA-AO-A0J5 TCGA-AO-A0J6 TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA 
       26.04        37.48        20.32        22.36        53.03        21.53 
TCGA-AO-A0JB TCGA-AO-A0JC TCGA-AO-A0JD TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JG 
       50.70        50.86        72.00        76.77        21.37        26.24 
TCGA-AO-A0JI TCGA-AO-A0JJ TCGA-AO-A0JL TCGA-AO-A0JM TCGA-AO-A125 TCGA-AO-A126 
       50.24        62.04        55.33        71.80        99.25       108.72 
TCGA-AO-A128 TCGA-AO-A12A TCGA-AO-A12D TCGA-AO-A12E TCGA-AO-A12F TCGA-AO-A12H 
      106.78        90.58        64.04        57.30        48.36        28.37 
TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KQ TCGA-AO-A1KT TCGA-AQ-A04H TCGA-AQ-A1H2 
       14.73        82.62        61.87        17.79        24.79        15.62 
TCGA-AQ-A1H3 TCGA-AQ-A54N TCGA-AQ-A54O TCGA-AQ-A7U7 TCGA-AR-A0TP TCGA-AR-A0TQ 
       32.52         2.56        32.91        19.20       111.32        73.64 
TCGA-AR-A0TR TCGA-AR-A0TX TCGA-AR-A0TY TCGA-AR-A0TZ TCGA-AR-A0U2 TCGA-AR-A0U3 
        5.26        64.83        55.86       107.24        83.87       114.02 
TCGA-AR-A0U4 TCGA-AR-A1AH TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AM 
       85.97        75.55        52.77        51.25        48.82        76.11 
TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AQ TCGA-AR-A1AR TCGA-AR-A1AS 
       43.73        43.56        39.98        43.07        17.23        37.81 
TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A24K TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24N 
       63.62        62.14        50.89        94.22        96.89        78.51 
TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24R TCGA-AR-A24S TCGA-AR-A24T TCGA-AR-A24U 
       84.20         2.76        87.22        97.84        76.01        53.36 
TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A252 
       85.35        50.96        83.77        79.00        89.00        73.18 
TCGA-AR-A254 TCGA-AR-A255 TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LK 
       72.76        58.92       143.21        20.25        62.86        54.21 
TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A5QM TCGA-AR-A5QN 
       52.11        38.17        39.39        40.54        54.74        16.04 
TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0IA 
       20.45        10.59        77.62       143.38       149.59       220.90 
TCGA-B6-A0IB TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0IJ 
      129.57        50.70        65.72       146.50       112.37       176.98 
TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RE 
       18.77       126.12        84.59       110.93       140.88       211.56 
TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RL TCGA-B6-A0RM TCGA-B6-A0RN 
       68.45       189.01       234.28        81.17        78.02       172.96 
TCGA-B6-A0RO TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RU TCGA-B6-A0RV 
      162.05       102.77       140.48        89.46       131.21       157.41 
TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WY 
       97.48       188.68        79.63        18.35        21.47       113.79 
TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 
      129.57       129.70       186.48        28.27        68.94        58.88 
TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A401 
       43.59       101.52        73.51       139.17       170.17        85.35 
TCGA-B6-A408 TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AU TCGA-BH-A0AZ TCGA-BH-A0B0 
       68.12       103.63        71.15        24.53        28.50        46.95 
TCGA-BH-A0B2 TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0B7 TCGA-BH-A0B9 TCGA-BH-A0BA 
       40.83        39.16        48.36        56.98        51.68        37.22 
TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BJ TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BP 
       32.02        18.21        21.70        61.68        35.67        48.69 
TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0BW 
       27.19        53.69        53.95        45.57        49.94        11.67 
TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DE 
       49.05        41.75        48.13        42.90        45.83        31.17 
TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DO 
       23.44        38.01        22.13        13.91        48.23        17.26 
TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX 
       15.65         3.22         2.56        38.47        67.86        47.41 
TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EA 
        4.41        15.68        14.30        44.81        46.19        32.58 
TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 
       31.00        24.43        30.35        10.78        15.16        37.78 
TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H7 TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0HB 
       35.51        24.56        23.08        41.00        52.96        26.50 
TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HU TCGA-BH-A0HW 
       20.38         5.85         2.50        13.61        12.89        51.32 
TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 
       27.25        50.79         5.59        23.93        24.95        42.35 
TCGA-BH-A0W7 TCGA-BH-A0WA TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J 
       44.81        23.05         8.81         2.01         7.23        20.12 
TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18R 
       90.84        26.66        72.56        37.74        30.28        37.55 
TCGA-BH-A18S TCGA-BH-A18T TCGA-BH-A18V TCGA-BH-A1EN TCGA-BH-A1ES TCGA-BH-A1ET 
       66.05         7.36        51.16        69.93       113.82        82.85 
TCGA-BH-A1EU TCGA-BH-A1EW TCGA-BH-A1EX TCGA-BH-A1EY TCGA-BH-A1F2 TCGA-BH-A1F5 
       42.28        55.69        49.58        17.69        31.53        89.16 
TCGA-BH-A1F8 TCGA-BH-A1FB TCGA-BH-A1FC TCGA-BH-A1FD TCGA-BH-A1FG TCGA-BH-A1FH 
       24.66       120.62       114.15        33.17       122.89        36.92 
TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FM TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A201 
       63.35        55.00        45.63       144.59        72.07        28.14 
TCGA-BH-A202 TCGA-BH-A204 TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 
       26.14        83.31       130.16        10.65         6.44        20.12 
TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A6R8 TCGA-BH-A6R9 TCGA-BH-A8FY TCGA-BH-A8FZ 
       10.52       109.28         9.63         5.26         9.70        18.87 
TCGA-BH-A8G0 TCGA-BH-AB28 TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12P 
       21.76         9.44        11.77        11.77        12.66        11.77 
TCGA-C8-A12U TCGA-C8-A12V TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A12Z TCGA-C8-A131 
       12.66        12.66        12.66        12.66         0.39         2.24 
TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A135 TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HF 
        1.87         1.12         1.05         4.08        12.33        10.92 
TCGA-C8-A1HI TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HL TCGA-C8-A1HN TCGA-C8-A26V 
       11.28         0.16        12.03        10.42         3.25         0.30 
TCGA-C8-A26W TCGA-C8-A26X TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A274 
        0.23         0.36         0.43         8.28         9.67         9.53 
TCGA-C8-A275 TCGA-C8-A27A TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-C8-A8HQ TCGA-C8-A8HR 
        0.03        12.20         0.03         0.23        12.49        13.41 
TCGA-C8-A9FZ TCGA-D8-A13Y TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A145 TCGA-D8-A146 
       19.46        11.90        13.25        20.58        13.48        21.14 
TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JD TCGA-D8-A1JE 
       17.49        16.50        18.71        15.78        18.15        18.90 
TCGA-D8-A1JF TCGA-D8-A1JH TCGA-D8-A1JI TCGA-D8-A1JK TCGA-D8-A1JM TCGA-D8-A1JN 
       12.03        14.01        18.97        20.12        19.40        20.38 
TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X6 TCGA-D8-A1X7 TCGA-D8-A1X8 
       12.20        13.32        14.70        17.79        16.73        25.74 
TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XF TCGA-D8-A1XG 
       23.90        27.58        18.15        12.39        15.22        14.73 
TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XT 
       19.92        17.69        15.55        15.85        16.31         6.35 
TCGA-D8-A1XU TCGA-D8-A1XV TCGA-D8-A1XW TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 
       12.99        15.16        12.66        15.52         9.93        14.24 
TCGA-D8-A1Y3 TCGA-D8-A27E TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27I TCGA-D8-A27K 
       14.14        17.42        13.45        13.05        14.43         9.44 
TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27R TCGA-D8-A27T 
       16.41        13.48         4.80         0.76        10.09        13.08 
TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-D8-A73U TCGA-D8-A73W 
       12.26        33.37        18.51        21.67        16.18         8.02 
TCGA-D8-A73X TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10A 
       12.10        43.00        34.42        27.52        46.59        40.41 
TCGA-E2-A10B TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14Q 
       37.51        28.44        28.87        47.15        44.68        38.24 
TCGA-E2-A14S TCGA-E2-A14U TCGA-E2-A14W TCGA-E2-A14Y TCGA-E2-A152 TCGA-E2-A153 
       33.17        43.33        32.02        28.60        27.12        23.24 
TCGA-E2-A154 TCGA-E2-A156 TCGA-E2-A158 TCGA-E2-A15A TCGA-E2-A15C TCGA-E2-A15D 
       19.43        23.87        14.79        23.34        22.82        17.29 
TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15I TCGA-E2-A15J 
       20.71        21.63        18.21        12.92        17.42        19.40 
TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15O TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A15S 
        9.04        20.58        13.02        19.56        17.06        14.07 
TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 
       14.99        60.53        53.03        33.01        32.35        28.50 
TCGA-E2-A1BC TCGA-E2-A1BD TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1IH TCGA-E2-A1IJ 
       16.47        17.10        37.41        32.78        33.73        28.44 
TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IO TCGA-E2-A1IU TCGA-E2-A1L6 
       22.65         3.88        22.19        20.98        11.08        54.18 
TCGA-E2-A1L8 TCGA-E2-A1L9 TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LG 
       39.62        19.66        24.59        40.47        28.90        18.87 
TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A1LL TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z 
      102.61         8.75        43.04         5.52        15.72         8.28 
TCGA-E2-A570 TCGA-E2-A576 TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N6 
       30.61        34.29        34.82        32.88        36.82        13.48 
TCGA-E9-A1NA TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NF TCGA-E9-A1NG 
       36.56        39.55        12.59        35.77        35.24        25.84 
TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R4 
        9.86        11.90        28.27        34.95         2.56         6.12 
TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RC 
        3.02         2.76        21.21        32.09        32.09        40.24 
TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RG TCGA-E9-A1RH TCGA-E9-A1RI TCGA-E9-A226 
        1.12        34.65        21.27        34.59        35.64        34.13 
TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A22D 
       32.05        12.53        13.32        39.09        22.75        41.03 
TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A244 TCGA-E9-A247 
       12.89        23.51        20.71        17.06         0.69        27.22 
TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A2JS TCGA-E9-A2JT TCGA-E9-A3Q9 TCGA-E9-A3X8 
        7.13        24.56        29.72         0.76        18.41        15.72 
TCGA-E9-A54X TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UO TCGA-E9-A5UP 
       12.33        23.84        14.70         0.79        13.81        14.40 
TCGA-E9-A6HE TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 
       15.39        12.20        39.72         8.48        18.21        18.90 
TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J5 TCGA-EW-A1J6 TCGA-EW-A1OX TCGA-EW-A1OY 
       13.25        16.57        15.68        28.77        29.95        29.85 
TCGA-EW-A1OZ TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P3 TCGA-EW-A1P5 TCGA-EW-A1PA 
       40.41        41.13        39.78        52.96        23.11        18.90 
TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PF TCGA-EW-A1PG 
       19.99         6.15        13.94        10.52        14.43        34.55 
TCGA-EW-A1PH TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A2FW TCGA-EW-A3E8 
       19.96        55.00        52.73        25.91        22.09        34.03 
TCGA-EW-A424 TCGA-GI-A2C8 TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DC TCGA-GM-A2DD 
       23.51         7.40        59.57       216.76        83.34        75.02 
TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A2DO 
       85.15        86.96       115.69       106.06       101.62        85.35 
TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV 
      110.50        38.20        43.73        66.38        72.03        13.55 
TCGA-GM-A5PX TCGA-HN-A2OB TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LD-A66U TCGA-LD-A74U 
       18.12        62.43        11.84        11.57        21.24        13.22 
TCGA-LD-A7W6 TCGA-LD-A9QF TCGA-LL-A440 TCGA-LL-A441 TCGA-LL-A442 TCGA-LL-A50Y 
       13.28        10.62        24.95        11.44        10.95        25.05 
TCGA-LL-A5YL TCGA-LL-A5YM TCGA-LL-A5YO TCGA-LL-A5YP TCGA-LL-A6FP TCGA-LL-A6FQ 
       17.06        15.32        14.47        14.79        22.26         2.63 
TCGA-LL-A740 TCGA-LL-A7SZ TCGA-LL-A8F5 TCGA-LL-A9Q3 TCGA-LQ-A4E4 TCGA-MS-A51U 
       14.50        14.70        14.73        14.07        27.91        22.39 
TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5RU TCGA-OL-A5RV 
        2.10        36.30        58.52        31.99        40.08        34.92 
TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J 
       28.87        24.72        22.32        26.70        23.47        65.62 
TCGA-OL-A66K TCGA-OL-A66L TCGA-OL-A66N TCGA-OL-A66O TCGA-OL-A66P TCGA-OL-A6VO 
       41.92        42.77        26.04        17.36        14.07        28.21 
TCGA-OL-A6VQ TCGA-OL-A6VR TCGA-OL-A97C TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE 
       19.73        40.11         8.91        47.01        64.21        86.96 
TCGA-PL-A8LX TCGA-PL-A8LY TCGA-S3-A6ZF TCGA-S3-A6ZG TCGA-S3-A6ZH TCGA-S3-AA10 
        0.16         0.26        16.50        13.12        16.93        15.39 
TCGA-S3-AA11 TCGA-S3-AA12 TCGA-S3-AA14 TCGA-S3-AA15 TCGA-S3-AA17 TCGA-UL-AAZ6 
       13.84        15.35        14.96        13.84        13.94        17.03 
TCGA-UU-A93S TCGA-W8-A86G TCGA-WT-AB41 TCGA-WT-AB44 TCGA-XX-A899 TCGA-XX-A89A 
        3.81        11.41        52.96        29.03        15.35        16.04 
TCGA-Z7-A8R6 
      107.05 

  AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE 
                       0.03                        0.03 
  AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE 
                     160.90                      234.28 
  AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE 
                      23.51                       24.59 
[1] "0.0 - 160.9 (23.5)" "0.0 - 234.3 (24.6)"
[1] "hr=" "1.4"
D9V2, continuous
                             vv
clus                          STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  AMP PEAK  9(6Q21) MUTATED        11        8        2        0        82
  AMP PEAK  9(6Q21) WILD-TYPE      78       73        6        3       271
                             vv
clus                          STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  AMP PEAK  9(6Q21) MUTATED          49         0         27          3
  AMP PEAK  9(6Q21) WILD-TYPE       196         2        123         26
                             vv
clus                          STAGE IIIC STAGE IV STAGE TIS STAGE X
  AMP PEAK  9(6Q21) MUTATED            9        4         0       0
  AMP PEAK  9(6Q21) WILD-TYPE         54       16         1      13
D9V3, multiclass
            clus
vv           AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE
  STAGE I                           11                          78
  STAGE IA                           8                          73
  STAGE IB                           2                           6
  STAGE II                           0                           3
  STAGE IIA                         82                         271
  STAGE IIB                         49                         196
  STAGE III                          0                           2
  STAGE IIIA                        27                         123
  STAGE IIIB                         3                          26
  STAGE IIIC                         9                          54
  STAGE IV                           4                          16
  STAGE TIS                          0                           1
  STAGE X                            0                          13
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                           T1  T2  T3  T4
  AMP PEAK  9(6Q21) MUTATED    32 141  21   4
  AMP PEAK  9(6Q21) WILD-TYPE 240 475 109  36
D9V4, multiclass
    clus
vv   AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE
  T1                        32                         240
  T2                       141                         475
  T3                        21                         109
  T4                         4                          36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                           N0  N1  N2  N3
  AMP PEAK  9(6Q21) MUTATED   105  56  25  10
  AMP PEAK  9(6Q21) WILD-TYPE 396 294  92  65
D9V5, multiclass
    clus
vv   AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE
  N0                       105                         396
  N1                        56                         294
  N2                        25                          92
  N3                        10                          65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D9V6, binary
                             cls
clus                            0   1
  AMP PEAK  9(6Q21) MUTATED   169   4
  AMP PEAK  9(6Q21) WILD-TYPE 710  17
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  9(6Q21) MUTATED    169    4
  AMP PEAK  9(6Q21) WILD-TYPE  710   17
   clus
vv  AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE
  0                       169                         710
  1                         4                          17
[1] 2 2
[1] FALSE
D9V7, binary
                             cls
clus                            0   1
  AMP PEAK  9(6Q21) MUTATED   197   1
  AMP PEAK  9(6Q21) WILD-TYPE 854  10
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  9(6Q21) MUTATED    197    1
  AMP PEAK  9(6Q21) WILD-TYPE  854   10
        clus
vv       AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE
  FEMALE                       197                         854
  MALE                           1                          10
[1] 2 2
[1] FALSE
                             vv
clus                          INFILTRATING CARCINOMA NOS
  AMP PEAK  9(6Q21) MUTATED                            1
  AMP PEAK  9(6Q21) WILD-TYPE                          0
                             vv
clus                          INFILTRATING DUCTAL CARCINOMA
  AMP PEAK  9(6Q21) MUTATED                             167
  AMP PEAK  9(6Q21) WILD-TYPE                           596
                             vv
clus                          INFILTRATING LOBULAR CARCINOMA
  AMP PEAK  9(6Q21) MUTATED                               14
  AMP PEAK  9(6Q21) WILD-TYPE                            178
                             vv
clus                          MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  AMP PEAK  9(6Q21) MUTATED                     3                     2
  AMP PEAK  9(6Q21) WILD-TYPE                   3                     2
                             vv
clus                          MIXED HISTOLOGY (PLEASE SPECIFY)
  AMP PEAK  9(6Q21) MUTATED                                  1
  AMP PEAK  9(6Q21) WILD-TYPE                               29
                             vv
clus                          MUCINOUS CARCINOMA OTHER  SPECIFY
  AMP PEAK  9(6Q21) MUTATED                    0             10
  AMP PEAK  9(6Q21) WILD-TYPE                 17             38
D9V8, multiclass
                                  clus
vv                                 AMP PEAK  9(6Q21) MUTATED
  INFILTRATING CARCINOMA NOS                               1
  INFILTRATING DUCTAL CARCINOMA                          167
  INFILTRATING LOBULAR CARCINOMA                          14
  MEDULLARY CARCINOMA                                      3
  METAPLASTIC CARCINOMA                                    2
  MIXED HISTOLOGY (PLEASE SPECIFY)                         1
  MUCINOUS CARCINOMA                                       0
  OTHER  SPECIFY                                          10
                                  clus
vv                                 AMP PEAK  9(6Q21) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                 0
  INFILTRATING DUCTAL CARCINOMA                            596
  INFILTRATING LOBULAR CARCINOMA                           178
  MEDULLARY CARCINOMA                                        3
  METAPLASTIC CARCINOMA                                      2
  MIXED HISTOLOGY (PLEASE SPECIFY)                          29
  MUCINOUS CARCINOMA                                        17
  OTHER  SPECIFY                                            38
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D9V9, binary
                             cls
clus                            0   1
  AMP PEAK  9(6Q21) MUTATED    59 139
  AMP PEAK  9(6Q21) WILD-TYPE 229 635
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  9(6Q21) MUTATED     59  139
  AMP PEAK  9(6Q21) WILD-TYPE  229  635
     clus
vv    AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE
  NO                         59                         229
  YES                       139                         635
[1] 2 2
[1] FALSE
D9V10, continuous
                             vv
clus                          AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK  9(6Q21) MUTATED                                  0    10
  AMP PEAK  9(6Q21) WILD-TYPE                                1    50
                             vv
clus                          BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK  9(6Q21) MUTATED                          41   128
  AMP PEAK  9(6Q21) WILD-TYPE                       129   608
D9V11, multiclass
                                  clus
vv                                 AMP PEAK  9(6Q21) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                         0
  ASIAN                                                   10
  BLACK OR AFRICAN AMERICAN                               41
  WHITE                                                  128
                                  clus
vv                                 AMP PEAK  9(6Q21) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                           1
  ASIAN                                                     50
  BLACK OR AFRICAN AMERICAN                                129
  WHITE                                                    608
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D9V12, binary
                             cls
clus                            0   1
  AMP PEAK  9(6Q21) MUTATED     7 157
  AMP PEAK  9(6Q21) WILD-TYPE  31 701
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  9(6Q21) MUTATED      7  157
  AMP PEAK  9(6Q21) WILD-TYPE   31  701
                        clus
vv                       AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE
  HISPANIC OR LATINO                             7                          31
  NOT HISPANIC OR LATINO                       157                         701
[1] 2 2
[1] FALSE

Clustering(10) Variable = AMP PEAK 10(8P11.23) MUTATION ANALYSIS
D10V1, survival
                                sevent
clus2                              0   1
  AMP PEAK 10(8P11.23) MUTATED   338  62
  AMP PEAK 10(8P11.23) WILD-TYPE 578  66
  AMP PEAK 10(8P11.23) MUTATED AMP PEAK 10(8P11.23) WILD-TYPE 
                           400                            644 
  AMP PEAK 10(8P11.23) MUTATED AMP PEAK 10(8P11.23) WILD-TYPE 
                            62                             66 
$`AMP PEAK 10(8P11.23) MUTATED`
TCGA-3C-AAAU TCGA-3C-AALI TCGA-3C-AALJ TCGA-5T-A9QA TCGA-A1-A0SE TCGA-A1-A0SF 
      129.14       131.67        42.81         9.96        43.43        48.10 
TCGA-A1-A0SG TCGA-A1-A0SJ TCGA-A1-A0SK TCGA-A2-A04N TCGA-A2-A04T TCGA-A2-A04V 
       14.27        13.68        31.79       104.81        73.84        63.12 
TCGA-A2-A0CM TCGA-A2-A0CP TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0D0 
       24.79        92.48        75.25         5.19        98.99        67.33 
TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0D4 TCGA-A2-A0EO TCGA-A2-A0ER 
       34.55        33.76        61.58        25.22        80.28        74.40 
TCGA-A2-A0ES TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0SV 
       72.00        34.29        31.82        61.94        24.72        27.12 
TCGA-A2-A0SW TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0YE 
       44.88         8.38        49.84        17.46        18.90        18.21 
TCGA-A2-A0YH TCGA-A2-A0YK TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FX TCGA-A2-A1G0 
       21.67        19.33        23.77        23.47        60.72        20.25 
TCGA-A2-A1G1 TCGA-A2-A1G4 TCGA-A2-A25D TCGA-A2-A3XT TCGA-A2-A4RX TCGA-A2-A4RY 
       19.20        19.56        18.15        83.01        24.39        21.30 
TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CD TCGA-A7-A0CJ TCGA-A7-A0D9 
       26.96        21.14        21.90        38.30        30.61        37.45 
TCGA-A7-A0DC TCGA-A7-A13E TCGA-A7-A13F TCGA-A7-A26F TCGA-A7-A26H TCGA-A7-A26I 
       29.79        20.19        25.15        24.26        23.80        21.73 
TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A426 TCGA-A7-A4SD TCGA-A7-A5ZV TCGA-A7-A5ZW 
       10.59        10.29        11.97        14.50        12.10        10.72 
TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06R TCGA-A8-A06U TCGA-A8-A06Y TCGA-A8-A076 
       13.02         1.02        17.98        29.03        26.01        53.98 
TCGA-A8-A07F TCGA-A8-A07L TCGA-A8-A07P TCGA-A8-A07W TCGA-A8-A082 TCGA-A8-A086 
       18.97        32.05        10.98         9.99        18.05        13.02 
TCGA-A8-A08C TCGA-A8-A08F TCGA-A8-A08G TCGA-A8-A08O TCGA-A8-A08R TCGA-A8-A08T 
       28.96        33.01        19.96        31.00         0.99       112.08 
TCGA-A8-A08Z TCGA-A8-A091 TCGA-A8-A093 TCGA-A8-A097 TCGA-A8-A09A TCGA-A8-A09B 
       40.01        33.01        17.95        12.00         9.99        12.00 
TCGA-A8-A09C TCGA-A8-A09E TCGA-A8-A09K TCGA-A8-A09M TCGA-A8-A09Q TCGA-A8-A09R 
        1.02        49.05        29.98        33.07        25.02         8.98 
TCGA-A8-A09X TCGA-A8-A0A2 TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-AC-A23E TCGA-AC-A23G 
       14.01        19.04        27.02        17.03         2.37        10.85 
TCGA-AC-A2BM TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A3QP TCGA-AC-A3YI TCGA-AC-A62V 
       99.35        26.04        50.70        22.19        23.24        11.44 
TCGA-AC-A62X TCGA-AC-A6IW TCGA-AC-A6IX TCGA-AC-A6NO TCGA-AC-A7VB TCGA-AC-A7VC 
       13.71        13.58        12.26         1.68         8.22         0.03 
TCGA-AN-A03X TCGA-AN-A0FD TCGA-AN-A0FK TCGA-AN-A0FW TCGA-AN-A0FX TCGA-AN-A0FY 
        0.33         6.44         7.00         0.36         0.33         0.33 
TCGA-AN-A0FZ TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XT TCGA-AN-A0XV TCGA-AO-A03O 
        0.33         0.33        12.33         0.33         5.33        81.63 
TCGA-AO-A03R TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J5 TCGA-AO-A0J7 TCGA-AO-A0JA 
       68.75        32.78        21.40        26.04        20.32        21.53 
TCGA-AO-A0JB TCGA-AO-A0JD TCGA-AO-A0JI TCGA-AO-A0JL TCGA-AO-A0JM TCGA-AO-A128 
       50.70        72.00        50.24        55.33        71.80       106.78 
TCGA-AO-A12B TCGA-AO-A12E TCGA-AO-A1KP TCGA-AO-A1KQ TCGA-AO-A1KS TCGA-AO-A1KT 
       98.27        57.30        82.62        61.87         0.53        17.79 
TCGA-AQ-A1H3 TCGA-AQ-A54N TCGA-AQ-A54O TCGA-AR-A0TS TCGA-AR-A0TW TCGA-AR-A0TY 
       32.52         2.56        32.91        74.79        98.93        55.86 
TCGA-AR-A0U2 TCGA-AR-A0U3 TCGA-AR-A0U4 TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AJ 
       83.87       114.02        85.97        75.55        61.84        52.77 
TCGA-AR-A1AQ TCGA-AR-A1AR TCGA-AR-A1AU TCGA-AR-A24H TCGA-AR-A24R TCGA-AR-A24V 
       43.07        17.23        76.21       160.90        87.22        85.35 
TCGA-AR-A24W TCGA-AR-A250 TCGA-AR-A256 TCGA-AR-A2LH TCGA-AR-A2LK TCGA-AR-A2LO 
       50.96        89.00        93.83        20.25        54.21        39.39 
TCGA-AR-A5QN TCGA-AR-A5QP TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0IA TCGA-B6-A0IB 
       16.04        20.45       143.38       149.59       220.90       129.57 
TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IM TCGA-B6-A0RG TCGA-B6-A0RL TCGA-B6-A0RM 
      112.37       176.98       126.12        68.45        81.17        78.02 
TCGA-B6-A0RP TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0WW 
      102.77       157.41        97.48       188.68        79.63        18.35 
TCGA-B6-A0WX TCGA-B6-A0WY TCGA-B6-A0X1 TCGA-B6-A0X5 TCGA-B6-A1KC TCGA-B6-A1KN 
       21.47       113.79       186.48        68.94        43.59       139.17 
TCGA-B6-A2IU TCGA-B6-A401 TCGA-B6-A408 TCGA-BH-A0AU TCGA-BH-A0AY TCGA-BH-A0B2 
      170.17        85.35        68.12        24.53        25.55        40.83 
TCGA-BH-A0BA TCGA-BH-A0BD TCGA-BH-A0BT TCGA-BH-A0BZ TCGA-BH-A0C1 TCGA-BH-A0DI 
       37.22        18.21        45.57        49.05        44.02        22.13 
TCGA-BH-A0DL TCGA-BH-A0DP TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0E1 TCGA-BH-A0E2 
       48.23        15.65         2.56        38.47        15.68        14.30 
TCGA-BH-A0E6 TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H6 TCGA-BH-A0H7 
        9.63        24.43        30.35        10.78        24.56        23.08 
TCGA-BH-A0HB TCGA-BH-A0HQ TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0W5 
       26.50        36.85        51.32        27.25        50.79        42.35 
TCGA-BH-A0W7 TCGA-BH-A0WA TCGA-BH-A18I TCGA-BH-A18S TCGA-BH-A18U TCGA-BH-A1EN 
       44.81        23.05         7.23        66.05        51.39        69.93 
TCGA-BH-A1EO TCGA-BH-A1ES TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EX TCGA-BH-A1F0 
       91.99       113.82        42.28        12.00        49.58        25.81 
TCGA-BH-A1F2 TCGA-BH-A1F5 TCGA-BH-A1F8 TCGA-BH-A1FC TCGA-BH-A1FD TCGA-BH-A1FH 
       31.53        89.16        24.66       114.15        33.17        36.92 
TCGA-BH-A1FM TCGA-BH-A201 TCGA-BH-A203 TCGA-BH-A204 TCGA-BH-A208 TCGA-BH-A209 
       45.63        28.14        38.60        83.31        57.83       130.16 
TCGA-BH-A42T TCGA-BH-A42V TCGA-BH-A5J0 TCGA-BH-A6R8 TCGA-C8-A12M TCGA-C8-A12O 
       10.52         8.94        23.51         9.63        11.77        12.66 
TCGA-C8-A12P TCGA-C8-A12V TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A132 TCGA-C8-A1HG 
       11.77        12.66        12.66        12.66         1.87        11.34 
TCGA-C8-A1HI TCGA-C8-A1HK TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A26Z TCGA-C8-A273 
       11.28        12.03         2.30         3.25         8.28         9.67 
TCGA-C8-A27A TCGA-C8-A3M8 TCGA-C8-A8HP TCGA-C8-A8HR TCGA-C8-A9FZ TCGA-D8-A13Y 
       12.20         0.23        13.02        13.41        19.46        11.90 
TCGA-D8-A13Z TCGA-D8-A141 TCGA-D8-A147 TCGA-D8-A1JC TCGA-D8-A1JF TCGA-D8-A1JH 
       20.88        20.58        19.20        15.78        12.03        14.01 
TCGA-D8-A1JI TCGA-D8-A1JL TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X6 TCGA-D8-A1XB 
       18.97        20.09        13.32        14.70        17.79        18.15 
TCGA-D8-A1XD TCGA-D8-A1XF TCGA-D8-A1XK TCGA-D8-A1XT TCGA-D8-A1XY TCGA-D8-A1XZ 
       17.16        15.22        14.50         6.35        16.54        15.32 
TCGA-D8-A1Y1 TCGA-D8-A1Y2 TCGA-D8-A1Y3 TCGA-D8-A27I TCGA-D8-A27L TCGA-D8-A27R 
        9.93        14.24        14.14        14.43        16.41        10.09 
TCGA-D8-A27V TCGA-D8-A27W TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A109 TCGA-E2-A10A 
       12.53        12.26        43.00        34.42        46.59        40.41 
TCGA-E2-A10C TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14T TCGA-E2-A154 
       40.11        47.15        44.68        40.96        33.30        19.43 
TCGA-E2-A159 TCGA-E2-A15A TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15F TCGA-E2-A15M 
       25.05        23.34        22.82        17.29        21.63        11.05 
TCGA-E2-A15O TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B0 
       13.02        17.06        14.07        14.99        60.53        53.62 
TCGA-E2-A1B6 TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IG TCGA-E2-A1IH TCGA-E2-A1II 
       28.50        17.10        38.30        32.78        33.73        33.70 
TCGA-E2-A1IN TCGA-E2-A1L6 TCGA-E2-A1LG TCGA-E2-A1LK TCGA-E2-A2P5 TCGA-E2-A56Z 
       22.19        54.18        18.87         8.75        16.93         8.28 
TCGA-E2-A573 TCGA-E2-A576 TCGA-E2-A9RU TCGA-E9-A1N5 TCGA-E9-A1N6 TCGA-E9-A1N9 
       34.92        34.29        12.85        36.82        13.48        13.12 
TCGA-E9-A1NE TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R6 TCGA-E9-A1RA TCGA-E9-A1RB 
       35.77        34.95         2.56         2.76        32.09        32.09 
TCGA-E9-A1RC TCGA-E9-A1RE TCGA-E9-A228 TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A22E 
       40.24        34.65        12.53        39.09        22.75        12.89 
TCGA-E9-A243 TCGA-E9-A247 TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A2JT TCGA-E9-A3X8 
       17.06        27.22         0.72        29.72         0.76        15.72 
TCGA-E9-A54X TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5UP TCGA-EW-A1IX TCGA-EW-A1IY 
       12.33        23.84        14.70        14.40        39.72         8.48 
TCGA-EW-A1J1 TCGA-EW-A1J6 TCGA-EW-A1OZ TCGA-EW-A1P0 TCGA-EW-A1P5 TCGA-EW-A1PA 
       18.90        28.77        40.41        41.13        23.11        18.90 
TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A1PH TCGA-EW-A2FR TCGA-GI-A2C8 TCGA-GM-A2D9 
       19.99         6.15        19.96        55.00         7.40        59.57 
TCGA-GM-A2DC TCGA-GM-A2DF TCGA-GM-A2DO TCGA-GM-A3NW TCGA-HN-A2NL TCGA-HN-A2OB 
       83.34        70.85        85.35       110.50         2.60        62.43 
TCGA-JL-A3YX TCGA-LD-A7W6 TCGA-LL-A440 TCGA-LL-A5YN TCGA-LL-A740 TCGA-LL-A7SZ 
       11.57        13.28        24.95        14.70        14.50        14.70 
TCGA-LL-A7T0 TCGA-LL-A9Q3 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A66I TCGA-OL-A66J 
       12.36        14.07        31.99        58.62        23.47        65.62 
TCGA-OL-A66N TCGA-OL-A6VR TCGA-S3-A6ZF TCGA-S3-A6ZG TCGA-S3-AA10 TCGA-S3-AA12 
       26.04        40.11        16.50        13.12        15.39        15.35 
TCGA-UU-A93S TCGA-W8-A86G TCGA-WT-AB41 TCGA-XX-A899 
        3.81        11.41        52.96        15.35 

$`AMP PEAK 10(8P11.23) WILD-TYPE`
TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT0 TCGA-5L-AAT1 TCGA-A1-A0SB TCGA-A1-A0SD 
       40.14        11.44        48.56        48.36         8.52        14.37 
TCGA-A1-A0SH TCGA-A1-A0SI TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SO TCGA-A1-A0SP 
       47.24        20.88         7.96        39.32        28.01        19.20 
TCGA-A1-A0SQ TCGA-A2-A04P TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04U TCGA-A2-A04W 
       18.21        18.02        78.41       121.94        87.25       101.98 
TCGA-A2-A04X TCGA-A2-A04Y TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CO TCGA-A2-A0CQ 
       55.43        36.13       136.73        99.12       114.81        88.60 
TCGA-A2-A0CR TCGA-A2-A0CS TCGA-A2-A0CW TCGA-A2-A0CX TCGA-A2-A0EM TCGA-A2-A0EN 
      107.93        75.55       107.93        56.81       101.72       134.40 
TCGA-A2-A0EP TCGA-A2-A0EQ TCGA-A2-A0ET TCGA-A2-A0EY TCGA-A2-A0ST TCGA-A2-A0SU 
      107.61        79.76        35.05        63.29        99.19        54.64 
TCGA-A2-A0SX TCGA-A2-A0SY TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T4 TCGA-A2-A0T7 
       50.43        44.28        17.52        17.13        20.52        20.75 
TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YF TCGA-A2-A0YG TCGA-A2-A0YI TCGA-A2-A0YJ 
       32.55        25.28        50.47        21.90        49.48        18.61 
TCGA-A2-A0YL TCGA-A2-A0YM TCGA-A2-A1FW TCGA-A2-A1FZ TCGA-A2-A1G6 TCGA-A2-A259 
       48.46        31.73        17.36        22.45        16.47        52.47 
TCGA-A2-A25A TCGA-A2-A25B TCGA-A2-A25C TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC 
      107.70        42.44        17.19       105.34        10.59        20.88 
TCGA-A2-A3KD TCGA-A2-A3XS TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX 
       39.65        33.93        29.98        32.75        49.48        47.31 
TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4S0 TCGA-A7-A0CE 
       34.98        50.37        38.37         7.30        23.21        35.31 
TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A13D TCGA-A7-A13G 
       34.29        35.47        35.67        33.11        31.73        23.61 
TCGA-A7-A13H TCGA-A7-A26E TCGA-A7-A26G TCGA-A7-A26J TCGA-A7-A2KD TCGA-A7-A3IY 
       29.56        31.36        23.74        20.61        22.32        11.34 
TCGA-A7-A3J1 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A4SA TCGA-A7-A4SB TCGA-A7-A4SE 
       11.28        13.41        14.70        14.93        13.74        21.17 
TCGA-A7-A4SF TCGA-A7-A56D TCGA-A7-A5ZX TCGA-A7-A6VV TCGA-A7-A6VW TCGA-A7-A6VX 
       17.92        14.73        11.05        10.29         9.37        10.42 
TCGA-A7-A6VY TCGA-A8-A06O TCGA-A8-A06T TCGA-A8-A06X TCGA-A8-A06Z TCGA-A8-A075 
        8.75        13.02        53.06        31.00         1.02        17.03 
TCGA-A8-A079 TCGA-A8-A07B TCGA-A8-A07E TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07J 
        9.01        43.00        19.99        18.97        14.01        12.00 
TCGA-A8-A07O TCGA-A8-A07R TCGA-A8-A07S TCGA-A8-A07U TCGA-A8-A07Z TCGA-A8-A084 
        9.99         8.98         7.99        24.99        45.07        15.06 
TCGA-A8-A085 TCGA-A8-A08A TCGA-A8-A08B TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L 
       36.95         0.99        38.01        12.00        37.05         9.99 
TCGA-A8-A08P TCGA-A8-A08S TCGA-A8-A08X TCGA-A8-A092 TCGA-A8-A095 TCGA-A8-A099 
       31.00        33.01        43.00        30.97        41.98         9.99 
TCGA-A8-A09D TCGA-A8-A09I TCGA-A8-A09N TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09W 
       50.04        45.07         1.02        19.04        15.02         0.99 
TCGA-A8-A0A1 TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A7 TCGA-A8-A0AD TCGA-AC-A23C 
       12.00        13.02        21.04         0.99        38.04         0.95 
TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2FB TCGA-AC-A2FF TCGA-AC-A2FG 
        5.72         1.48        38.53        40.57        55.43        36.99 
TCGA-AC-A2FK TCGA-AC-A2QH TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3HN 
       38.79        33.04         0.92         2.27        32.45        16.31 
TCGA-AC-A3OD TCGA-AC-A3TN TCGA-AC-A3W5 TCGA-AC-A3W6 TCGA-AC-A3YJ TCGA-AC-A5XS 
       14.83        14.99        16.57        19.79        24.79         1.55 
TCGA-AC-A62Y TCGA-AC-A6IV TCGA-AC-A8OP TCGA-AC-A8OQ TCGA-AC-A8OR TCGA-AC-A8OS 
       17.42        18.67        20.19         1.12         1.32         2.30 
TCGA-AN-A03Y TCGA-AN-A041 TCGA-AN-A046 TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04C 
        0.33         0.23         0.33         0.62         2.96         1.78 
TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AK TCGA-AN-A0AL TCGA-AN-A0AM TCGA-AN-A0AR 
        1.71         9.96         7.36         6.51         0.16         0.33 
TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FL TCGA-AN-A0FN 
        0.33         0.33         5.65         7.96         7.59         7.17 
TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0XL TCGA-AN-A0XP TCGA-AN-A0XR 
        6.28         7.04         0.33         0.33         0.30         0.33 
TCGA-AN-A0XS TCGA-AN-A0XU TCGA-AN-A0XW TCGA-AO-A03L TCGA-AO-A03M TCGA-AO-A03N 
        0.33         0.33         5.59        80.28        61.35        66.77 
TCGA-AO-A03P TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J4 TCGA-AO-A0J6 
       95.70        47.87        58.95        29.13        52.18        37.48 
TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JC TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JG 
       22.36        53.03        50.86        76.77        21.37        26.24 
TCGA-AO-A0JJ TCGA-AO-A124 TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A129 TCGA-AO-A12A 
       62.04       102.58        99.25       108.72       108.03        90.58 
TCGA-AO-A12D TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KR 
       64.04        48.36        41.62        28.37        14.73        70.39 
TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A0Y5 TCGA-AQ-A1H2 TCGA-AQ-A7U7 
       24.79        26.93       130.09         5.65        15.62        19.20 
TCGA-AR-A0TP TCGA-AR-A0TQ TCGA-AR-A0TR TCGA-AR-A0TT TCGA-AR-A0TV TCGA-AR-A0TX 
      111.32        73.64         5.26        86.66        42.35        64.83 
TCGA-AR-A0TZ TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AM 
      107.24        65.36       101.95        51.25        48.82        76.11 
TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AS TCGA-AR-A1AV TCGA-AR-A1AW 
       43.73        43.56        39.98        37.81        61.28        63.62 
TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24K TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24N 
       62.14        33.73        50.89        94.22        96.89        78.51 
TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24Q TCGA-AR-A24S TCGA-AR-A24T TCGA-AR-A24U 
       84.20         2.76       104.28        97.84        76.01        53.36 
TCGA-AR-A24X TCGA-AR-A24Z TCGA-AR-A251 TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A255 
       83.77        79.00        78.48        73.18        72.76        58.92 
TCGA-AR-A2LE TCGA-AR-A2LJ TCGA-AR-A2LL TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LQ 
      143.21        62.86        66.15        52.11        38.17        40.54 
TCGA-AR-A2LR TCGA-AR-A5QM TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I9 TCGA-B6-A0IC 
       20.38        54.74        10.59        77.62        12.13        50.70 
TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IK TCGA-B6-A0IN TCGA-B6-A0IO TCGA-B6-A0IP 
       65.72       146.50        18.77        84.59       110.14       110.93 
TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RN TCGA-B6-A0RO 
      140.88       211.56       189.01       234.28       172.96       162.05 
TCGA-B6-A0RQ TCGA-B6-A0RS TCGA-B6-A0RT TCGA-B6-A0RU TCGA-B6-A0WZ TCGA-B6-A0X0 
      140.48       100.70        89.46       131.21       129.57       129.70 
TCGA-B6-A0X4 TCGA-B6-A0X7 TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A402 TCGA-B6-A40B 
       28.27        58.88       101.52        73.51        74.99       103.63 
TCGA-B6-A40C TCGA-BH-A0AV TCGA-BH-A0AW TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B3 
       71.15        59.84        20.45        28.50        46.95        39.55 
TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0B6 TCGA-BH-A0B7 TCGA-BH-A0B9 TCGA-BH-A0BC 
       39.16        48.36        56.94        56.98        51.68        32.02 
TCGA-BH-A0BF TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BM TCGA-BH-A0BO 
       25.71        24.85        21.70        44.05        61.68        35.67 
TCGA-BH-A0BP TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BV TCGA-BH-A0BW 
       48.69        27.19        53.69        53.95        49.94        11.67 
TCGA-BH-A0C0 TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DG 
       41.75        48.13        42.90        45.83        31.17        23.44 
TCGA-BH-A0DH TCGA-BH-A0DK TCGA-BH-A0DO TCGA-BH-A0DQ TCGA-BH-A0DV TCGA-BH-A0DX 
       38.01        13.91        17.26         3.22        67.86        47.41 
TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EA TCGA-BH-A0EB 
       16.27         4.41        44.81        46.19        32.58        24.49 
TCGA-BH-A0EE TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H9 TCGA-BH-A0HA 
       31.00        15.16        37.78        35.51        41.00        52.96 
TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HU TCGA-BH-A0RX 
       20.38         5.85         2.50        13.61        12.89         5.59 
TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18J TCGA-BH-A18K 
       23.93        24.95         8.81         2.01        20.12        90.84 
TCGA-BH-A18L TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18R 
       26.66        72.56        37.74        30.28        55.63        37.55 
TCGA-BH-A18T TCGA-BH-A18V TCGA-BH-A1ET TCGA-BH-A1EW TCGA-BH-A1EY TCGA-BH-A1F6 
        7.36        51.16        82.85        55.69        17.69        97.48 
TCGA-BH-A1FB TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FN 
      120.62        74.73       122.89        63.35        55.00        72.07 
TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A202 TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 
      144.59        72.07        26.14        10.65         6.44        20.12 
TCGA-BH-A42U TCGA-BH-A5IZ TCGA-BH-A6R9 TCGA-BH-A8FY TCGA-BH-A8FZ TCGA-BH-A8G0 
      109.28        18.64         5.26         9.70        18.87        21.76 
TCGA-BH-AB28 TCGA-C8-A12L TCGA-C8-A12N TCGA-C8-A12Q TCGA-C8-A12U TCGA-C8-A12Z 
        9.44        11.93        11.77        12.66        12.66         0.39 
TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A134 TCGA-C8-A135 TCGA-C8-A137 TCGA-C8-A138 
        3.16         2.24         1.12         1.05         4.11         4.08 
TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HJ TCGA-C8-A1HL TCGA-C8-A26V TCGA-C8-A26W 
       12.33        10.92         0.16        10.42         0.30         0.23 
TCGA-C8-A26X TCGA-C8-A26Y TCGA-C8-A274 TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A27B 
        0.36         0.43         9.53         0.03         9.50         0.99 
TCGA-C8-A3M7 TCGA-C8-A8HQ TCGA-D8-A140 TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A145 
        0.03        12.49        13.25        13.97        14.17        13.48 
TCGA-D8-A146 TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JD 
       21.14        14.17        17.49        16.50        18.71        18.15 
TCGA-D8-A1JE TCGA-D8-A1JG TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JM TCGA-D8-A1JN 
       18.90        12.03        20.09        20.12        19.40        20.38 
TCGA-D8-A1JP TCGA-D8-A1JS TCGA-D8-A1X5 TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1X9 
       21.01        12.20        18.58        16.73        25.74        23.90 
TCGA-D8-A1XA TCGA-D8-A1XC TCGA-D8-A1XG TCGA-D8-A1XJ TCGA-D8-A1XL TCGA-D8-A1XM 
       27.58        12.39        14.73        21.83        19.92        17.69 
TCGA-D8-A1XO TCGA-D8-A1XQ TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XU TCGA-D8-A1XV 
       15.55        16.41        15.85        16.31        12.99        15.16 
TCGA-D8-A1XW TCGA-D8-A1Y0 TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27G TCGA-D8-A27H 
       12.66        15.52        17.42        16.04        13.45        13.05 
TCGA-D8-A27K TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27T TCGA-D8-A3Z5 
        9.44        13.48         4.80         0.76        13.08        33.37 
TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-D8-A73U TCGA-D8-A73W TCGA-D8-A73X TCGA-E2-A108 
       18.51        21.67        16.18         8.02        12.10        27.52 
TCGA-E2-A10B TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14Q TCGA-E2-A14R TCGA-E2-A14S 
       37.51        28.44        28.87        38.24        38.60        33.17 
TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14W TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A14Z 
       43.33        34.26        32.02        31.96        28.60        18.51 
TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A153 TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A158 
       25.41        27.12        23.24        21.04        23.87        14.79 
TCGA-E2-A15E TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K 
       20.71        18.21        12.92        17.42        19.40         9.04 
TCGA-E2-A15L TCGA-E2-A15P TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1BC 
       20.58        19.56        53.03        33.01        32.35        16.47 
TCGA-E2-A1IF TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IO TCGA-E2-A1IU 
       37.41        28.44        22.65         3.88        20.98        11.08 
TCGA-E2-A1L7 TCGA-E2-A1L8 TCGA-E2-A1L9 TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LE 
       27.42        39.62        19.66        24.59        40.47        28.90 
TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LL TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A570 
      106.75       102.61        43.04         5.52        15.72        30.61 
TCGA-E2-A574 TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N8 TCGA-E9-A1NA TCGA-E9-A1NC 
       26.56        34.82        32.88        12.00        36.56        39.55 
TCGA-E9-A1ND TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R0 
       12.59        35.24        25.84         9.86        11.90        28.27 
TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R7 TCGA-E9-A1RD TCGA-E9-A1RF TCGA-E9-A1RG 
        6.12         3.02        21.21         1.12         6.58        21.27 
TCGA-E9-A1RH TCGA-E9-A1RI TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A229 TCGA-E9-A22D 
       34.59        35.64        34.13        32.05        13.32        41.03 
TCGA-E9-A22G TCGA-E9-A22H TCGA-E9-A244 TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A 
       23.51        20.71         0.69         1.94         7.13        24.56 
TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3QA TCGA-E9-A5FL TCGA-E9-A5UO TCGA-E9-A6HE 
       26.07        18.41        30.18         0.79        13.81        15.39 
TCGA-EW-A1IW TCGA-EW-A1IZ TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J5 TCGA-EW-A1OV 
       12.20        18.21        13.25        16.57        15.68        25.94 
TCGA-EW-A1OW TCGA-EW-A1OX TCGA-EW-A1OY TCGA-EW-A1P1 TCGA-EW-A1P3 TCGA-EW-A1P4 
       22.82        29.95        29.85        39.78        52.96        29.82 
TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1P8 TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PF 
       18.48        30.08         7.86        13.94        10.52        14.43 
TCGA-EW-A1PG TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A3U0 
       34.55        52.73        25.91        22.09        34.03        17.49 
TCGA-EW-A423 TCGA-EW-A424 TCGA-GI-A2C9 TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DD 
       10.16        23.51       109.87       216.76        79.10        75.02 
TCGA-GM-A2DH TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN 
       72.10        85.15        86.96       115.69       106.06       101.62 
TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XL TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV 
       38.20        43.73        69.30        66.38        72.03        13.55 
TCGA-GM-A5PX TCGA-JL-A3YW TCGA-LD-A66U TCGA-LD-A74U TCGA-LD-A7W5 TCGA-LD-A9QF 
       18.12        11.84        21.24        13.22         7.10        10.62 
TCGA-LL-A441 TCGA-LL-A442 TCGA-LL-A50Y TCGA-LL-A5YL TCGA-LL-A5YM TCGA-LL-A5YO 
       11.44        10.95        25.05        17.06        15.32        14.47 
TCGA-LL-A5YP TCGA-LL-A6FP TCGA-LL-A6FQ TCGA-LL-A6FR TCGA-LL-A73Y TCGA-LL-A73Z 
       14.79        22.26         2.63        16.08        15.68         7.46 
TCGA-LL-A8F5 TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5D7 
       14.73        27.91        22.39         2.10        36.30        58.52 
TCGA-OL-A5RU TCGA-OL-A5RV TCGA-OL-A5RW TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5RZ 
       40.08        34.92        36.36        28.87        24.72        22.32 
TCGA-OL-A5S0 TCGA-OL-A66H TCGA-OL-A66K TCGA-OL-A66L TCGA-OL-A66O TCGA-OL-A66P 
       20.38        26.70        41.92        42.77        17.36        14.07 
TCGA-OL-A6VO TCGA-OL-A6VQ TCGA-OL-A97C TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE 
       28.21        19.73         8.91        47.01        64.21        86.96 
TCGA-PL-A8LX TCGA-PL-A8LY TCGA-PL-A8LZ TCGA-S3-A6ZH TCGA-S3-AA0Z TCGA-S3-AA11 
        0.16         0.26         9.93        16.93        16.80        13.84 
TCGA-S3-AA14 TCGA-S3-AA15 TCGA-S3-AA17 TCGA-UL-AAZ6 TCGA-WT-AB44 TCGA-XX-A89A 
       14.96        13.84        13.94        17.03        29.03        16.04 
TCGA-Z7-A8R5 TCGA-Z7-A8R6 
      108.07       107.05 

  AMP PEAK 10(8P11.23) MUTATED AMP PEAK 10(8P11.23) WILD-TYPE 
                          0.03                           0.03 
  AMP PEAK 10(8P11.23) MUTATED AMP PEAK 10(8P11.23) WILD-TYPE 
                        220.90                         234.28 
  AMP PEAK 10(8P11.23) MUTATED AMP PEAK 10(8P11.23) WILD-TYPE 
                        24.325                         24.755 
[1] "0.0 - 220.9 (24.3)" "0.0 - 234.3 (24.8)"
[1] "hr=" "1.5"
D10V2, continuous
                                vv
clus                             STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  AMP PEAK 10(8P11.23) MUTATED        24       28        4        0       135
  AMP PEAK 10(8P11.23) WILD-TYPE      65       53        4        3       218
                                vv
clus                             STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  AMP PEAK 10(8P11.23) MUTATED          92         2         56         16
  AMP PEAK 10(8P11.23) WILD-TYPE       153         0         94         13
                                vv
clus                             STAGE IIIC STAGE IV STAGE TIS STAGE X
  AMP PEAK 10(8P11.23) MUTATED           28       12         0       6
  AMP PEAK 10(8P11.23) WILD-TYPE         35        8         1       7
D10V3, multiclass
            clus
vv           AMP PEAK 10(8P11.23) MUTATED AMP PEAK 10(8P11.23) WILD-TYPE
  STAGE I                              24                             65
  STAGE IA                             28                             53
  STAGE IB                              4                              4
  STAGE II                              0                              3
  STAGE IIA                           135                            218
  STAGE IIB                            92                            153
  STAGE III                             2                              0
  STAGE IIIA                           56                             94
  STAGE IIIB                           16                             13
  STAGE IIIC                           28                             35
  STAGE IV                             12                              8
  STAGE TIS                             0                              1
  STAGE X                               6                              7
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              T1  T2  T3  T4
  AMP PEAK 10(8P11.23) MUTATED   101 238  46  19
  AMP PEAK 10(8P11.23) WILD-TYPE 171 378  84  21
D10V4, multiclass
    clus
vv   AMP PEAK 10(8P11.23) MUTATED AMP PEAK 10(8P11.23) WILD-TYPE
  T1                          101                            171
  T2                          238                            378
  T3                           46                             84
  T4                           19                             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              N0  N1  N2  N3
  AMP PEAK 10(8P11.23) MUTATED   171 144  48  34
  AMP PEAK 10(8P11.23) WILD-TYPE 330 206  69  41
D10V5, multiclass
    clus
vv   AMP PEAK 10(8P11.23) MUTATED AMP PEAK 10(8P11.23) WILD-TYPE
  N0                          171                            330
  N1                          144                            206
  N2                           48                             69
  N3                           34                             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D10V6, binary
                                cls
clus                               0   1
  AMP PEAK 10(8P11.23) MUTATED   340  12
  AMP PEAK 10(8P11.23) WILD-TYPE 539   9
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 10(8P11.23) MUTATED    340   12
  AMP PEAK 10(8P11.23) WILD-TYPE  539    9
   clus
vv  AMP PEAK 10(8P11.23) MUTATED AMP PEAK 10(8P11.23) WILD-TYPE
  0                          340                            539
  1                           12                              9
[1] 2 2
[1] FALSE
D10V7, binary
                                cls
clus                               0   1
  AMP PEAK 10(8P11.23) MUTATED   403   3
  AMP PEAK 10(8P11.23) WILD-TYPE 648   8
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 10(8P11.23) MUTATED    403    3
  AMP PEAK 10(8P11.23) WILD-TYPE  648    8
        clus
vv       AMP PEAK 10(8P11.23) MUTATED AMP PEAK 10(8P11.23) WILD-TYPE
  FEMALE                          403                            648
  MALE                              3                              8
[1] 2 2
[1] FALSE
                                vv
clus                             INFILTRATING CARCINOMA NOS
  AMP PEAK 10(8P11.23) MUTATED                            1
  AMP PEAK 10(8P11.23) WILD-TYPE                          0
                                vv
clus                             INFILTRATING DUCTAL CARCINOMA
  AMP PEAK 10(8P11.23) MUTATED                             300
  AMP PEAK 10(8P11.23) WILD-TYPE                           463
                                vv
clus                             INFILTRATING LOBULAR CARCINOMA
  AMP PEAK 10(8P11.23) MUTATED                               62
  AMP PEAK 10(8P11.23) WILD-TYPE                            130
                                vv
clus                             MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  AMP PEAK 10(8P11.23) MUTATED                     4                     2
  AMP PEAK 10(8P11.23) WILD-TYPE                   2                     2
                                vv
clus                             MIXED HISTOLOGY (PLEASE SPECIFY)
  AMP PEAK 10(8P11.23) MUTATED                                 12
  AMP PEAK 10(8P11.23) WILD-TYPE                               18
                                vv
clus                             MUCINOUS CARCINOMA OTHER  SPECIFY
  AMP PEAK 10(8P11.23) MUTATED                    5             19
  AMP PEAK 10(8P11.23) WILD-TYPE                 12             29
D10V8, multiclass
                                  clus
vv                                 AMP PEAK 10(8P11.23) MUTATED
  INFILTRATING CARCINOMA NOS                                  1
  INFILTRATING DUCTAL CARCINOMA                             300
  INFILTRATING LOBULAR CARCINOMA                             62
  MEDULLARY CARCINOMA                                         4
  METAPLASTIC CARCINOMA                                       2
  MIXED HISTOLOGY (PLEASE SPECIFY)                           12
  MUCINOUS CARCINOMA                                          5
  OTHER  SPECIFY                                             19
                                  clus
vv                                 AMP PEAK 10(8P11.23) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                    0
  INFILTRATING DUCTAL CARCINOMA                               463
  INFILTRATING LOBULAR CARCINOMA                              130
  MEDULLARY CARCINOMA                                           2
  METAPLASTIC CARCINOMA                                         2
  MIXED HISTOLOGY (PLEASE SPECIFY)                             18
  MUCINOUS CARCINOMA                                           12
  OTHER  SPECIFY                                               29
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D10V9, binary
                                cls
clus                               0   1
  AMP PEAK 10(8P11.23) MUTATED   113 293
  AMP PEAK 10(8P11.23) WILD-TYPE 175 481
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 10(8P11.23) MUTATED    113  293
  AMP PEAK 10(8P11.23) WILD-TYPE  175  481
     clus
vv    AMP PEAK 10(8P11.23) MUTATED AMP PEAK 10(8P11.23) WILD-TYPE
  NO                           113                            175
  YES                          293                            481
[1] 2 2
[1] FALSE
D10V10, continuous
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK 10(8P11.23) MUTATED                                  0    26
  AMP PEAK 10(8P11.23) WILD-TYPE                                1    34
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 10(8P11.23) MUTATED                          68   272
  AMP PEAK 10(8P11.23) WILD-TYPE                       102   464
D10V11, multiclass
                                  clus
vv                                 AMP PEAK 10(8P11.23) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            0
  ASIAN                                                      26
  BLACK OR AFRICAN AMERICAN                                  68
  WHITE                                                     272
                                  clus
vv                                 AMP PEAK 10(8P11.23) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              1
  ASIAN                                                        34
  BLACK OR AFRICAN AMERICAN                                   102
  WHITE                                                       464
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D10V12, binary
                                cls
clus                               0   1
  AMP PEAK 10(8P11.23) MUTATED    12 332
  AMP PEAK 10(8P11.23) WILD-TYPE  26 526
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 10(8P11.23) MUTATED     12  332
  AMP PEAK 10(8P11.23) WILD-TYPE   26  526
                        clus
vv                       AMP PEAK 10(8P11.23) MUTATED
  HISPANIC OR LATINO                               12
  NOT HISPANIC OR LATINO                          332
                        clus
vv                       AMP PEAK 10(8P11.23) WILD-TYPE
  HISPANIC OR LATINO                                 26
  NOT HISPANIC OR LATINO                            526
[1] 2 2
[1] FALSE

Clustering(11) Variable = AMP PEAK 11(8P11.21) MUTATION ANALYSIS
D11V1, survival
                                sevent
clus2                              0   1
  AMP PEAK 11(8P11.21) MUTATED   351  54
  AMP PEAK 11(8P11.21) WILD-TYPE 565  74
  AMP PEAK 11(8P11.21) MUTATED AMP PEAK 11(8P11.21) WILD-TYPE 
                           405                            639 
  AMP PEAK 11(8P11.21) MUTATED AMP PEAK 11(8P11.21) WILD-TYPE 
                            54                             74 
$`AMP PEAK 11(8P11.21) MUTATED`
TCGA-3C-AAAU TCGA-3C-AALI TCGA-5T-A9QA TCGA-A1-A0SE TCGA-A1-A0SG TCGA-A1-A0SJ 
      129.14       131.67         9.96        43.43        14.27        13.68 
TCGA-A1-A0SK TCGA-A1-A0SO TCGA-A2-A04N TCGA-A2-A04T TCGA-A2-A04V TCGA-A2-A0CM 
       31.79        28.01       104.81        73.84        63.12        24.79 
TCGA-A2-A0CP TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CX TCGA-A2-A0D0 
       92.48        75.25         5.19        98.99        56.81        67.33 
TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0D4 TCGA-A2-A0EO TCGA-A2-A0ER 
       34.55        33.76        61.58        25.22        80.28        74.40 
TCGA-A2-A0ES TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EX TCGA-A2-A0SW TCGA-A2-A0T2 
       72.00        34.29        31.82        24.72        44.88         8.38 
TCGA-A2-A0T3 TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0YE TCGA-A2-A0YH TCGA-A2-A0YJ 
       49.84        17.46        18.90        18.21        21.67        18.61 
TCGA-A2-A0YM TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FX TCGA-A2-A1G0 TCGA-A2-A1G1 
       31.73        23.77        23.47        60.72        20.25        19.20 
TCGA-A2-A1G4 TCGA-A2-A25D TCGA-A2-A3XT TCGA-A2-A3XU TCGA-A2-A3XX TCGA-A2-A3Y0 
       19.56        18.15        83.01        29.98        47.31        38.37 
TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CD 
       24.39        21.30        26.96        21.14        21.90        38.30 
TCGA-A7-A0CJ TCGA-A7-A0DC TCGA-A7-A13E TCGA-A7-A13F TCGA-A7-A26F TCGA-A7-A26H 
       30.61        29.79        20.19        25.15        24.26        23.80 
TCGA-A7-A26I TCGA-A7-A26J TCGA-A7-A3J0 TCGA-A7-A426 TCGA-A7-A4SD TCGA-A7-A5ZV 
       21.73        20.61        10.29        11.97        14.50        12.10 
TCGA-A7-A5ZW TCGA-A7-A6VX TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06Y 
       10.72        10.42        13.02        13.02         1.02        26.01 
TCGA-A8-A076 TCGA-A8-A07B TCGA-A8-A07F TCGA-A8-A07I TCGA-A8-A07L TCGA-A8-A07O 
       53.98        43.00        18.97        14.01        32.05         9.99 
TCGA-A8-A07P TCGA-A8-A07R TCGA-A8-A07W TCGA-A8-A082 TCGA-A8-A086 TCGA-A8-A08C 
       10.98         8.98         9.99        18.05        13.02        28.96 
TCGA-A8-A08F TCGA-A8-A08G TCGA-A8-A08R TCGA-A8-A08S TCGA-A8-A08Z TCGA-A8-A091 
       33.01        19.96         0.99        33.01        40.01        33.01 
TCGA-A8-A092 TCGA-A8-A093 TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09C TCGA-A8-A09E 
       30.97        17.95         9.99        12.00         1.02        49.05 
TCGA-A8-A09I TCGA-A8-A09M TCGA-A8-A09X TCGA-A8-A0A2 TCGA-A8-A0A9 TCGA-A8-A0AB 
       45.07        33.07        14.01        19.04        27.02        17.03 
TCGA-AC-A23E TCGA-AC-A23G TCGA-AC-A2BM TCGA-AC-A2FM TCGA-AC-A3QP TCGA-AC-A3YI 
        2.37        10.85        99.35        26.04        22.19        23.24 
TCGA-AC-A62V TCGA-AC-A62X TCGA-AC-A6IW TCGA-AC-A6NO TCGA-AC-A7VC TCGA-AN-A03X 
       11.44        13.71        13.58         1.68         0.03         0.33 
TCGA-AN-A03Y TCGA-AN-A0AS TCGA-AN-A0FK TCGA-AN-A0FW TCGA-AN-A0FX TCGA-AN-A0FY 
        0.33         0.33         7.00         0.36         0.33         0.33 
TCGA-AN-A0FZ TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XS TCGA-AN-A0XV TCGA-AO-A03O 
        0.33         0.33        12.33         0.33         5.33        81.63 
TCGA-AO-A03R TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J6 TCGA-AO-A0J7 TCGA-AO-A0JA 
       68.75        32.78        21.40        37.48        20.32        21.53 
TCGA-AO-A0JD TCGA-AO-A0JL TCGA-AO-A0JM TCGA-AO-A126 TCGA-AO-A128 TCGA-AO-A12B 
       72.00        55.33        71.80       108.72       106.78        98.27 
TCGA-AO-A1KP TCGA-AO-A1KQ TCGA-AO-A1KR TCGA-AO-A1KS TCGA-AQ-A04H TCGA-AQ-A04L 
       82.62        61.87        70.39         0.53        24.79       130.09 
TCGA-AQ-A1H3 TCGA-AQ-A54N TCGA-AQ-A54O TCGA-AR-A0TS TCGA-AR-A0TW TCGA-AR-A0TX 
       32.52         2.56        32.91        74.79        98.93        64.83 
TCGA-AR-A0U3 TCGA-AR-A0U4 TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AQ 
      114.02        85.97        75.55        61.84        52.77        43.07 
TCGA-AR-A1AR TCGA-AR-A1AU TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24R 
       17.23        76.21        62.14        33.73       160.90        87.22 
TCGA-AR-A24W TCGA-AR-A24Z TCGA-AR-A251 TCGA-AR-A2LH TCGA-AR-A2LK TCGA-AR-A2LL 
       50.96        79.00        78.48        20.25        54.21        66.15 
TCGA-AR-A2LO TCGA-AR-A2LR TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I2 
       39.39        20.38        20.45        10.59        77.62       143.38 
TCGA-B6-A0I5 TCGA-B6-A0IA TCGA-B6-A0IB TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IM 
      149.59       220.90       129.57       112.37       176.98       126.12 
TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RL TCGA-B6-A0RM TCGA-B6-A0RP TCGA-B6-A0RU 
      211.56        68.45        81.17        78.02       102.77       131.21 
TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0X1 
      157.41        97.48       188.68        18.35        21.47       186.48 
TCGA-B6-A0X5 TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A401 
       68.94        43.59       101.52       139.17       170.17        85.35 
TCGA-B6-A402 TCGA-B6-A408 TCGA-BH-A0AY TCGA-BH-A0B2 TCGA-BH-A0BA TCGA-BH-A0BD 
       74.99        68.12        25.55        40.83        37.22        18.21 
TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0DL 
       45.57        49.94        49.05        41.75        44.02        48.23 
TCGA-BH-A0DP TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0E1 TCGA-BH-A0E6 TCGA-BH-A0E7 
       15.65         2.56        38.47        15.68         9.63        44.81 
TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H6 TCGA-BH-A0H7 TCGA-BH-A0HB 
       30.35        10.78        15.16        24.56        23.08        26.50 
TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0W5 
       36.85        12.89        51.32        27.25        50.79        42.35 
TCGA-BH-A0W7 TCGA-BH-A0WA TCGA-BH-A18I TCGA-BH-A18S TCGA-BH-A18T TCGA-BH-A1EO 
       44.81        23.05         7.23        66.05         7.36        91.99 
TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1EX TCGA-BH-A1F0 TCGA-BH-A1F2 
       42.28        12.00        55.69        49.58        25.81        31.53 
TCGA-BH-A1F5 TCGA-BH-A1FB TCGA-BH-A1FC TCGA-BH-A1FD TCGA-BH-A1FG TCGA-BH-A1FM 
       89.16       120.62       114.15        33.17       122.89        45.63 
TCGA-BH-A1FN TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A204 TCGA-BH-A209 TCGA-BH-A42T 
       72.07        28.14        26.14        83.31       130.16        10.52 
TCGA-BH-A42V TCGA-BH-A6R8 TCGA-C8-A12M TCGA-C8-A12O TCGA-C8-A12V TCGA-C8-A12X 
        8.94         9.63        11.77        12.66        12.66        12.66 
TCGA-C8-A132 TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A26X 
        1.87        11.34        11.28         2.30         3.25         0.36 
TCGA-C8-A26Z TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A3M8 TCGA-C8-A8HR 
        8.28         9.50        12.20         0.99         0.23        13.41 
TCGA-C8-A9FZ TCGA-D8-A13Y TCGA-D8-A141 TCGA-D8-A143 TCGA-D8-A147 TCGA-D8-A1JC 
       19.46        11.90        20.58        14.17        19.20        15.78 
TCGA-D8-A1JF TCGA-D8-A1JH TCGA-D8-A1JI TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JM 
       12.03        14.01        18.97        20.12        20.09        19.40 
TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X6 TCGA-D8-A1XB TCGA-D8-A1XD TCGA-D8-A1XF 
       13.32        14.70        17.79        18.15        17.16        15.22 
TCGA-D8-A1XK TCGA-D8-A1XT TCGA-D8-A1XY TCGA-D8-A1Y1 TCGA-D8-A1Y2 TCGA-D8-A1Y3 
       14.50         6.35        16.54         9.93        14.24        14.14 
TCGA-D8-A27I TCGA-D8-A27M TCGA-D8-A27R TCGA-D8-A27V TCGA-E2-A107 TCGA-E2-A109 
       14.43        13.48        10.09        12.53        34.42        46.59 
TCGA-E2-A10A TCGA-E2-A10C TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14S 
       40.41        40.11        47.15        44.68        40.96        33.17 
TCGA-E2-A14U TCGA-E2-A14X TCGA-E2-A154 TCGA-E2-A159 TCGA-E2-A15A TCGA-E2-A15C 
       43.33        31.96        19.43        25.05        23.34        22.82 
TCGA-E2-A15D TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15M TCGA-E2-A15R TCGA-E2-A15S 
       17.29        20.71        21.63        11.05        17.06        14.07 
TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B6 TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IG 
       60.53        53.62        28.50        17.10        38.30        32.78 
TCGA-E2-A1II TCGA-E2-A1IN TCGA-E2-A1LG TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A2P5 
       33.70        22.19        18.87       102.61         8.75        16.93 
TCGA-E2-A56Z TCGA-E2-A573 TCGA-E2-A574 TCGA-E2-A576 TCGA-E2-A9RU TCGA-E9-A1N5 
        8.28        34.92        26.56        34.29        12.85        36.82 
TCGA-E9-A1N6 TCGA-E9-A1N9 TCGA-E9-A1NE TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R6 
       13.48        13.12        35.77        34.95         2.56         2.76 
TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A243 
       32.09        32.09        40.24        34.65         6.58        17.06 
TCGA-E9-A247 TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A2JT TCGA-E9-A3QA TCGA-E9-A3X8 
       27.22         0.72        29.72         0.76        30.18        15.72 
TCGA-E9-A54X TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5UP TCGA-EW-A1IY TCGA-EW-A1J1 
       12.33        23.84        14.70        14.40         8.48        18.90 
TCGA-EW-A1J6 TCGA-EW-A1OY TCGA-EW-A1OZ TCGA-EW-A1P0 TCGA-EW-A1P3 TCGA-EW-A1P5 
       28.77        29.85        40.41        41.13        52.96        23.11 
TCGA-EW-A1P6 TCGA-EW-A1P8 TCGA-EW-A1PA TCGA-EW-A1PB TCGA-EW-A1PC TCGA-GI-A2C8 
       18.48         7.86        18.90        19.99         6.15         7.40 
TCGA-GI-A2C9 TCGA-GM-A2D9 TCGA-GM-A2DC TCGA-GM-A2DD TCGA-GM-A2DF TCGA-GM-A3NW 
      109.87        59.57        83.34        75.02        70.85       110.50 
TCGA-HN-A2NL TCGA-JL-A3YX TCGA-LD-A7W5 TCGA-LD-A7W6 TCGA-LL-A5YM TCGA-LL-A5YP 
        2.60        11.57         7.10        13.28        15.32        14.79 
TCGA-LL-A73Y TCGA-LL-A740 TCGA-LL-A7SZ TCGA-LL-A7T0 TCGA-LL-A8F5 TCGA-LL-A9Q3 
       15.68        14.50        14.70        12.36        14.73        14.07 
TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66N 
       58.52        31.99        58.62        23.47        65.62        26.04 
TCGA-OL-A6VO TCGA-OL-A6VR TCGA-S3-A6ZF TCGA-S3-A6ZG TCGA-S3-A6ZH TCGA-S3-AA10 
       28.21        40.11        16.50        13.12        16.93        15.39 
TCGA-W8-A86G TCGA-WT-AB41 TCGA-XX-A899 
       11.41        52.96        15.35 

$`AMP PEAK 11(8P11.21) WILD-TYPE`
TCGA-3C-AALJ TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT0 TCGA-5L-AAT1 TCGA-A1-A0SB 
       42.81        40.14        11.44        48.56        48.36         8.52 
TCGA-A1-A0SD TCGA-A1-A0SF TCGA-A1-A0SH TCGA-A1-A0SI TCGA-A1-A0SM TCGA-A1-A0SN 
       14.37        48.10        47.24        20.88         7.96        39.32 
TCGA-A1-A0SP TCGA-A1-A0SQ TCGA-A2-A04P TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04U 
       19.20        18.21        18.02        78.41       121.94        87.25 
TCGA-A2-A04W TCGA-A2-A04X TCGA-A2-A04Y TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CO 
      101.98        55.43        36.13       136.73        99.12       114.81 
TCGA-A2-A0CQ TCGA-A2-A0CR TCGA-A2-A0CS TCGA-A2-A0CW TCGA-A2-A0EM TCGA-A2-A0EN 
       88.60       107.93        75.55       107.93       101.72       134.40 
TCGA-A2-A0EP TCGA-A2-A0EQ TCGA-A2-A0ET TCGA-A2-A0EW TCGA-A2-A0EY TCGA-A2-A0ST 
      107.61        79.76        35.05        61.94        63.29        99.19 
TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SX TCGA-A2-A0SY TCGA-A2-A0T0 TCGA-A2-A0T1 
       54.64        27.12        50.43        44.28        17.52        17.13 
TCGA-A2-A0T4 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YF TCGA-A2-A0YG 
       20.52        20.75        32.55        25.28        50.47        21.90 
TCGA-A2-A0YI TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A1FW TCGA-A2-A1FZ TCGA-A2-A1G6 
       49.48        19.33        48.46        17.36        22.45        16.47 
TCGA-A2-A259 TCGA-A2-A25A TCGA-A2-A25B TCGA-A2-A25C TCGA-A2-A25E TCGA-A2-A25F 
       52.47       107.70        42.44        17.19       105.34        10.59 
TCGA-A2-A3KC TCGA-A2-A3KD TCGA-A2-A3XS TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XY 
       20.88        39.65        33.93        32.75        49.48        34.98 
TCGA-A2-A3XZ TCGA-A2-A4RW TCGA-A2-A4S0 TCGA-A7-A0CE TCGA-A7-A0CG TCGA-A7-A0CH 
       50.37         7.30        23.21        35.31        34.29        35.47 
TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A13D TCGA-A7-A13G TCGA-A7-A13H 
       37.45        35.67        33.11        31.73        23.61        29.56 
TCGA-A7-A26E TCGA-A7-A26G TCGA-A7-A2KD TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J1 
       31.36        23.74        22.32        11.34        10.59        11.28 
TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A4SA TCGA-A7-A4SB TCGA-A7-A4SE TCGA-A7-A4SF 
       13.41        14.70        14.93        13.74        21.17        17.92 
TCGA-A7-A56D TCGA-A7-A5ZX TCGA-A7-A6VV TCGA-A7-A6VW TCGA-A7-A6VY TCGA-A8-A06R 
       14.73        11.05        10.29         9.37         8.75        17.98 
TCGA-A8-A06T TCGA-A8-A06U TCGA-A8-A06X TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A079 
       53.06        29.03        31.00         1.02        17.03         9.01 
TCGA-A8-A07E TCGA-A8-A07G TCGA-A8-A07J TCGA-A8-A07S TCGA-A8-A07U TCGA-A8-A07Z 
       19.99        18.97        12.00         7.99        24.99        45.07 
TCGA-A8-A084 TCGA-A8-A085 TCGA-A8-A08A TCGA-A8-A08B TCGA-A8-A08I TCGA-A8-A08J 
       15.06        36.95         0.99        38.01        12.00        37.05 
TCGA-A8-A08L TCGA-A8-A08O TCGA-A8-A08P TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A095 
        9.99        31.00        31.00       112.08        43.00        41.98 
TCGA-A8-A097 TCGA-A8-A099 TCGA-A8-A09D TCGA-A8-A09K TCGA-A8-A09N TCGA-A8-A09Q 
       12.00         9.99        50.04        29.98         1.02        25.02 
TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A0A1 TCGA-A8-A0A4 
        8.98        19.04        15.02         0.99        12.00        13.02 
TCGA-A8-A0A6 TCGA-A8-A0A7 TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23H TCGA-AC-A2B8 
       21.04         0.99        38.04         0.95         5.72         1.48 
TCGA-AC-A2BK TCGA-AC-A2FB TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FO 
       38.53        40.57        55.43        36.99        38.79        50.70 
TCGA-AC-A2QH TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3HN TCGA-AC-A3OD 
       33.04         0.92         2.27        32.45        16.31        14.83 
TCGA-AC-A3TN TCGA-AC-A3W5 TCGA-AC-A3W6 TCGA-AC-A3YJ TCGA-AC-A5XS TCGA-AC-A62Y 
       14.99        16.57        19.79        24.79         1.55        17.42 
TCGA-AC-A6IV TCGA-AC-A6IX TCGA-AC-A7VB TCGA-AC-A8OP TCGA-AC-A8OQ TCGA-AC-A8OR 
       18.67        12.26         8.22        20.19         1.12         1.32 
TCGA-AC-A8OS TCGA-AN-A041 TCGA-AN-A046 TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04C 
        2.30         0.23         0.33         0.62         2.96         1.78 
TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AK TCGA-AN-A0AL TCGA-AN-A0AM TCGA-AN-A0AR 
        1.71         9.96         7.36         6.51         0.16         0.33 
TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FL TCGA-AN-A0FN 
        0.33         6.44         5.65         7.96         7.59         7.17 
TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0XL TCGA-AN-A0XP TCGA-AN-A0XR 
        6.28         7.04         0.33         0.33         0.30         0.33 
TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AN-A0XW TCGA-AO-A03L TCGA-AO-A03M TCGA-AO-A03N 
        0.33         0.33         5.59        80.28        61.35        66.77 
TCGA-AO-A03P TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J4 TCGA-AO-A0J5 
       95.70        47.87        58.95        29.13        52.18        26.04 
TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JB TCGA-AO-A0JC TCGA-AO-A0JE TCGA-AO-A0JF 
       22.36        53.03        50.70        50.86        76.77        21.37 
TCGA-AO-A0JG TCGA-AO-A0JI TCGA-AO-A0JJ TCGA-AO-A124 TCGA-AO-A125 TCGA-AO-A129 
       26.24        50.24        62.04       102.58        99.25       108.03 
TCGA-AO-A12A TCGA-AO-A12D TCGA-AO-A12E TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A12H 
       90.58        64.04        57.30        48.36        41.62        28.37 
TCGA-AO-A1KO TCGA-AO-A1KT TCGA-AQ-A04J TCGA-AQ-A0Y5 TCGA-AQ-A1H2 TCGA-AQ-A7U7 
       14.73        17.79        26.93         5.65        15.62        19.20 
TCGA-AR-A0TP TCGA-AR-A0TQ TCGA-AR-A0TR TCGA-AR-A0TT TCGA-AR-A0TV TCGA-AR-A0TY 
      111.32        73.64         5.26        86.66        42.35        55.86 
TCGA-AR-A0TZ TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A0U2 TCGA-AR-A1AK TCGA-AR-A1AL 
      107.24        65.36       101.95        83.87        51.25        48.82 
TCGA-AR-A1AM TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AS TCGA-AR-A1AV 
       76.11        43.73        43.56        39.98        37.81        61.28 
TCGA-AR-A1AW TCGA-AR-A24K TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O 
       63.62        50.89        94.22        96.89        78.51        84.20 
TCGA-AR-A24P TCGA-AR-A24Q TCGA-AR-A24S TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24V 
        2.76       104.28        97.84        76.01        53.36        85.35 
TCGA-AR-A24X TCGA-AR-A250 TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A255 TCGA-AR-A256 
       83.77        89.00        73.18        72.76        58.92        93.83 
TCGA-AR-A2LE TCGA-AR-A2LJ TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LQ TCGA-AR-A5QM 
      143.21        62.86        52.11        38.17        40.54        54.74 
TCGA-AR-A5QN TCGA-B6-A0I9 TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IK 
       16.04        12.13        50.70        65.72       146.50        18.77 
TCGA-B6-A0IN TCGA-B6-A0IO TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RH TCGA-B6-A0RI 
       84.59       110.14       110.93       140.88       189.01       234.28 
TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RQ TCGA-B6-A0RS TCGA-B6-A0RT TCGA-B6-A0WV 
      172.96       162.05       140.48       100.70        89.46        79.63 
TCGA-B6-A0WY TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X4 TCGA-B6-A0X7 TCGA-B6-A1KI 
      113.79       129.57       129.70        28.27        58.88        73.51 
TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AU TCGA-BH-A0AV TCGA-BH-A0AW TCGA-BH-A0AZ 
      103.63        71.15        24.53        59.84        20.45        28.50 
TCGA-BH-A0B0 TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0B6 TCGA-BH-A0B7 
       46.95        39.55        39.16        48.36        56.94        56.98 
TCGA-BH-A0B9 TCGA-BH-A0BC TCGA-BH-A0BF TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BL 
       51.68        32.02        25.71        24.85        21.70        44.05 
TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BP TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS 
       61.68        35.67        48.69        27.19        53.69        53.95 
TCGA-BH-A0BW TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DG 
       11.67        48.13        42.90        45.83        31.17        23.44 
TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DO TCGA-BH-A0DQ TCGA-BH-A0DV 
       38.01        22.13        13.91        17.26         3.22        67.86 
TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E2 TCGA-BH-A0E9 TCGA-BH-A0EA 
       47.41        16.27         4.41        14.30        46.19        32.58 
TCGA-BH-A0EB TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H9 
       24.49        31.00        24.43        37.78        35.51        41.00 
TCGA-BH-A0HA TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0RX 
       52.96        20.38         5.85         2.50        13.61         5.59 
TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18J TCGA-BH-A18K 
       23.93        24.95         8.81         2.01        20.12        90.84 
TCGA-BH-A18L TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18R 
       26.66        72.56        37.74        30.28        55.63        37.55 
TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1EN TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EY 
       51.39        51.16        69.93       113.82        82.85        17.69 
TCGA-BH-A1F6 TCGA-BH-A1F8 TCGA-BH-A1FE TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL 
       97.48        24.66        74.73        36.92        63.35        55.00 
TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A203 TCGA-BH-A208 TCGA-BH-A28O TCGA-BH-A28Q 
      144.59        72.07        38.60        57.83        10.65         6.44 
TCGA-BH-A2L8 TCGA-BH-A42U TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-BH-A6R9 TCGA-BH-A8FY 
       20.12       109.28        18.64        23.51         5.26         9.70 
TCGA-BH-A8FZ TCGA-BH-A8G0 TCGA-BH-AB28 TCGA-C8-A12L TCGA-C8-A12N TCGA-C8-A12P 
       18.87        21.76         9.44        11.93        11.77        11.77 
TCGA-C8-A12Q TCGA-C8-A12U TCGA-C8-A12W TCGA-C8-A12Z TCGA-C8-A130 TCGA-C8-A131 
       12.66        12.66        12.66         0.39         3.16         2.24 
TCGA-C8-A134 TCGA-C8-A135 TCGA-C8-A137 TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HF 
        1.12         1.05         4.11         4.08        12.33        10.92 
TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HL TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A26Y 
        0.16        12.03        10.42         0.30         0.23         0.43 
TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A275 TCGA-C8-A3M7 TCGA-C8-A8HP TCGA-C8-A8HQ 
        9.67         9.53         0.03         0.03        13.02        12.49 
TCGA-D8-A13Z TCGA-D8-A140 TCGA-D8-A142 TCGA-D8-A145 TCGA-D8-A146 TCGA-D8-A1J8 
       20.88        13.25        13.97        13.48        21.14        14.17 
TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JG 
       17.49        16.50        18.71        18.15        18.90        12.03 
TCGA-D8-A1JJ TCGA-D8-A1JN TCGA-D8-A1JP TCGA-D8-A1JS TCGA-D8-A1X5 TCGA-D8-A1X7 
       20.09        20.38        21.01        12.20        18.58        16.73 
TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XC TCGA-D8-A1XG TCGA-D8-A1XJ 
       25.74        23.90        27.58        12.39        14.73        21.83 
TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XQ TCGA-D8-A1XR TCGA-D8-A1XS 
       19.92        17.69        15.55        16.41        15.85        16.31 
TCGA-D8-A1XU TCGA-D8-A1XV TCGA-D8-A1XW TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A27E 
       12.99        15.16        12.66        15.32        15.52        17.42 
TCGA-D8-A27F TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27N 
       16.04        13.45        13.05         9.44        16.41         4.80 
TCGA-D8-A27P TCGA-D8-A27T TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 
        0.76        13.08        12.26        33.37        18.51        21.67 
TCGA-D8-A73U TCGA-D8-A73W TCGA-D8-A73X TCGA-E2-A105 TCGA-E2-A108 TCGA-E2-A10B 
       16.18         8.02        12.10        43.00        27.52        37.51 
TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14Q TCGA-E2-A14R TCGA-E2-A14T TCGA-E2-A14V 
       28.44        28.87        38.24        38.60        33.30        34.26 
TCGA-E2-A14W TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A153 
       32.02        28.60        18.51        25.41        27.12        23.24 
TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A158 TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15I 
       21.04        23.87        14.79        18.21        12.92        17.42 
TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15O TCGA-E2-A15P TCGA-E2-A15T 
       19.40         9.04        20.58        13.02        19.56        14.99 
TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1BC TCGA-E2-A1IF TCGA-E2-A1IH 
       53.03        33.01        32.35        16.47        37.41        33.73 
TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IO TCGA-E2-A1IU TCGA-E2-A1L6 
       28.44        22.65         3.88        20.98        11.08        54.18 
TCGA-E2-A1L7 TCGA-E2-A1L8 TCGA-E2-A1L9 TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LE 
       27.42        39.62        19.66        24.59        40.47        28.90 
TCGA-E2-A1LH TCGA-E2-A1LL TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A570 TCGA-E9-A1N3 
      106.75        43.04         5.52        15.72        30.61        34.82 
TCGA-E9-A1N4 TCGA-E9-A1N8 TCGA-E9-A1NA TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NF 
       32.88        12.00        36.56        39.55        12.59        35.24 
TCGA-E9-A1NG TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R4 TCGA-E9-A1R5 
       25.84         9.86        11.90        28.27         6.12         3.02 
TCGA-E9-A1R7 TCGA-E9-A1RD TCGA-E9-A1RG TCGA-E9-A1RH TCGA-E9-A1RI TCGA-E9-A226 
       21.21         1.12        21.27        34.59        35.64        34.13 
TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A22D 
       32.05        12.53        13.32        39.09        22.75        41.03 
TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A22H TCGA-E9-A244 TCGA-E9-A248 TCGA-E9-A249 
       12.89        23.51        20.71         0.69         1.94         7.13 
TCGA-E9-A24A TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A5FL TCGA-E9-A5UO TCGA-E9-A6HE 
       24.56        26.07        18.41         0.79        13.81        15.39 
TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IZ TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J5 
       12.20        39.72        18.21        13.25        16.57        15.68 
TCGA-EW-A1OV TCGA-EW-A1OW TCGA-EW-A1OX TCGA-EW-A1P1 TCGA-EW-A1P4 TCGA-EW-A1P7 
       25.94        22.82        29.95        39.78        29.82        30.08 
TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PF TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FR 
       13.94        10.52        14.43        34.55        19.96        55.00 
TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A3U0 TCGA-EW-A423 
       52.73        25.91        22.09        34.03        17.49        10.16 
TCGA-EW-A424 TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DH TCGA-GM-A2DI TCGA-GM-A2DK 
       23.51       216.76        79.10        72.10        85.15        86.96 
TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A2DO TCGA-GM-A3NY TCGA-GM-A3XG 
      115.69       106.06       101.62        85.35        38.20        43.73 
TCGA-GM-A3XL TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2OB 
       69.30        66.38        72.03        13.55        18.12        62.43 
TCGA-JL-A3YW TCGA-LD-A66U TCGA-LD-A74U TCGA-LD-A9QF TCGA-LL-A440 TCGA-LL-A441 
       11.84        21.24        13.22        10.62        24.95        11.44 
TCGA-LL-A442 TCGA-LL-A50Y TCGA-LL-A5YL TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LL-A6FP 
       10.95        25.05        17.06        14.70        14.47        22.26 
TCGA-LL-A6FQ TCGA-LL-A6FR TCGA-LL-A73Z TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 
        2.63        16.08         7.46        27.91        22.39         2.10 
TCGA-OL-A5D6 TCGA-OL-A5RU TCGA-OL-A5RV TCGA-OL-A5RW TCGA-OL-A5RX TCGA-OL-A5RY 
       36.30        40.08        34.92        36.36        28.87        24.72 
TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66H TCGA-OL-A66K TCGA-OL-A66L TCGA-OL-A66O 
       22.32        20.38        26.70        41.92        42.77        17.36 
TCGA-OL-A66P TCGA-OL-A6VQ TCGA-OL-A97C TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE 
       14.07        19.73         8.91        47.01        64.21        86.96 
TCGA-PL-A8LX TCGA-PL-A8LY TCGA-PL-A8LZ TCGA-S3-AA0Z TCGA-S3-AA11 TCGA-S3-AA12 
        0.16         0.26         9.93        16.80        13.84        15.35 
TCGA-S3-AA14 TCGA-S3-AA15 TCGA-S3-AA17 TCGA-UL-AAZ6 TCGA-UU-A93S TCGA-WT-AB44 
       14.96        13.84        13.94        17.03         3.81        29.03 
TCGA-XX-A89A TCGA-Z7-A8R5 TCGA-Z7-A8R6 
       16.04       108.07       107.05 

  AMP PEAK 11(8P11.21) MUTATED AMP PEAK 11(8P11.21) WILD-TYPE 
                          0.03                           0.03 
  AMP PEAK 11(8P11.21) MUTATED AMP PEAK 11(8P11.21) WILD-TYPE 
                        220.90                         234.28 
  AMP PEAK 11(8P11.21) MUTATED AMP PEAK 11(8P11.21) WILD-TYPE 
                         24.72                          24.49 
[1] "0.0 - 220.9 (24.7)" "0.0 - 234.3 (24.5)"
[1] "hr=" "1"  
D11V2, continuous
                                vv
clus                             STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  AMP PEAK 11(8P11.21) MUTATED        30       31        4        1       144
  AMP PEAK 11(8P11.21) WILD-TYPE      59       50        4        2       209
                                vv
clus                             STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  AMP PEAK 11(8P11.21) MUTATED          88         2         56         13
  AMP PEAK 11(8P11.21) WILD-TYPE       157         0         94         16
                                vv
clus                             STAGE IIIC STAGE IV STAGE TIS STAGE X
  AMP PEAK 11(8P11.21) MUTATED           28        6         0       7
  AMP PEAK 11(8P11.21) WILD-TYPE         35       14         1       6
D11V3, multiclass
            clus
vv           AMP PEAK 11(8P11.21) MUTATED AMP PEAK 11(8P11.21) WILD-TYPE
  STAGE I                              30                             59
  STAGE IA                             31                             50
  STAGE IB                              4                              4
  STAGE II                              1                              2
  STAGE IIA                           144                            209
  STAGE IIB                            88                            157
  STAGE III                             2                              0
  STAGE IIIA                           56                             94
  STAGE IIIB                           13                             16
  STAGE IIIC                           28                             35
  STAGE IV                              6                             14
  STAGE TIS                             0                              1
  STAGE X                               7                              6
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              T1  T2  T3  T4
  AMP PEAK 11(8P11.21) MUTATED   103 244  48  14
  AMP PEAK 11(8P11.21) WILD-TYPE 169 372  82  26
D11V4, multiclass
    clus
vv   AMP PEAK 11(8P11.21) MUTATED AMP PEAK 11(8P11.21) WILD-TYPE
  T1                          103                            169
  T2                          244                            372
  T3                           48                             82
  T4                           14                             26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              N0  N1  N2  N3
  AMP PEAK 11(8P11.21) MUTATED   195 130  46  32
  AMP PEAK 11(8P11.21) WILD-TYPE 306 220  71  43
D11V5, multiclass
    clus
vv   AMP PEAK 11(8P11.21) MUTATED AMP PEAK 11(8P11.21) WILD-TYPE
  N0                          195                            306
  N1                          130                            220
  N2                           46                             71
  N3                           32                             43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D11V6, binary
                                cls
clus                               0   1
  AMP PEAK 11(8P11.21) MUTATED   350   6
  AMP PEAK 11(8P11.21) WILD-TYPE 529  15
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 11(8P11.21) MUTATED    350    6
  AMP PEAK 11(8P11.21) WILD-TYPE  529   15
   clus
vv  AMP PEAK 11(8P11.21) MUTATED AMP PEAK 11(8P11.21) WILD-TYPE
  0                          350                            529
  1                            6                             15
[1] 2 2
[1] FALSE
D11V7, binary
                                cls
clus                               0   1
  AMP PEAK 11(8P11.21) MUTATED   409   3
  AMP PEAK 11(8P11.21) WILD-TYPE 642   8
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 11(8P11.21) MUTATED    409    3
  AMP PEAK 11(8P11.21) WILD-TYPE  642    8
        clus
vv       AMP PEAK 11(8P11.21) MUTATED AMP PEAK 11(8P11.21) WILD-TYPE
  FEMALE                          409                            642
  MALE                              3                              8
[1] 2 2
[1] FALSE
                                vv
clus                             INFILTRATING CARCINOMA NOS
  AMP PEAK 11(8P11.21) MUTATED                            1
  AMP PEAK 11(8P11.21) WILD-TYPE                          0
                                vv
clus                             INFILTRATING DUCTAL CARCINOMA
  AMP PEAK 11(8P11.21) MUTATED                             316
  AMP PEAK 11(8P11.21) WILD-TYPE                           447
                                vv
clus                             INFILTRATING LOBULAR CARCINOMA
  AMP PEAK 11(8P11.21) MUTATED                               53
  AMP PEAK 11(8P11.21) WILD-TYPE                            139
                                vv
clus                             MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  AMP PEAK 11(8P11.21) MUTATED                     5                     1
  AMP PEAK 11(8P11.21) WILD-TYPE                   1                     3
                                vv
clus                             MIXED HISTOLOGY (PLEASE SPECIFY)
  AMP PEAK 11(8P11.21) MUTATED                                 11
  AMP PEAK 11(8P11.21) WILD-TYPE                               19
                                vv
clus                             MUCINOUS CARCINOMA OTHER  SPECIFY
  AMP PEAK 11(8P11.21) MUTATED                    4             20
  AMP PEAK 11(8P11.21) WILD-TYPE                 13             28
D11V8, multiclass
                                  clus
vv                                 AMP PEAK 11(8P11.21) MUTATED
  INFILTRATING CARCINOMA NOS                                  1
  INFILTRATING DUCTAL CARCINOMA                             316
  INFILTRATING LOBULAR CARCINOMA                             53
  MEDULLARY CARCINOMA                                         5
  METAPLASTIC CARCINOMA                                       1
  MIXED HISTOLOGY (PLEASE SPECIFY)                           11
  MUCINOUS CARCINOMA                                          4
  OTHER  SPECIFY                                             20
                                  clus
vv                                 AMP PEAK 11(8P11.21) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                    0
  INFILTRATING DUCTAL CARCINOMA                               447
  INFILTRATING LOBULAR CARCINOMA                              139
  MEDULLARY CARCINOMA                                           1
  METAPLASTIC CARCINOMA                                         3
  MIXED HISTOLOGY (PLEASE SPECIFY)                             19
  MUCINOUS CARCINOMA                                           13
  OTHER  SPECIFY                                               28
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D11V9, binary
                                cls
clus                               0   1
  AMP PEAK 11(8P11.21) MUTATED   121 291
  AMP PEAK 11(8P11.21) WILD-TYPE 167 483
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 11(8P11.21) MUTATED    121  291
  AMP PEAK 11(8P11.21) WILD-TYPE  167  483
     clus
vv    AMP PEAK 11(8P11.21) MUTATED AMP PEAK 11(8P11.21) WILD-TYPE
  NO                           121                            167
  YES                          291                            483
[1] 2 2
[1] FALSE
D11V10, continuous
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK 11(8P11.21) MUTATED                                  0    24
  AMP PEAK 11(8P11.21) WILD-TYPE                                1    36
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 11(8P11.21) MUTATED                          76   271
  AMP PEAK 11(8P11.21) WILD-TYPE                        94   465
D11V11, multiclass
                                  clus
vv                                 AMP PEAK 11(8P11.21) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            0
  ASIAN                                                      24
  BLACK OR AFRICAN AMERICAN                                  76
  WHITE                                                     271
                                  clus
vv                                 AMP PEAK 11(8P11.21) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              1
  ASIAN                                                        36
  BLACK OR AFRICAN AMERICAN                                    94
  WHITE                                                       465
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D11V12, binary
                                cls
clus                               0   1
  AMP PEAK 11(8P11.21) MUTATED    12 333
  AMP PEAK 11(8P11.21) WILD-TYPE  26 525
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 11(8P11.21) MUTATED     12  333
  AMP PEAK 11(8P11.21) WILD-TYPE   26  525
                        clus
vv                       AMP PEAK 11(8P11.21) MUTATED
  HISPANIC OR LATINO                               12
  NOT HISPANIC OR LATINO                          333
                        clus
vv                       AMP PEAK 11(8P11.21) WILD-TYPE
  HISPANIC OR LATINO                                 26
  NOT HISPANIC OR LATINO                            525
[1] 2 2
[1] FALSE

Clustering(12) Variable = AMP PEAK 12(8Q24.21) MUTATION ANALYSIS
D12V1, survival
                                sevent
clus2                              0   1
  AMP PEAK 12(8Q24.21) MUTATED   568  90
  AMP PEAK 12(8Q24.21) WILD-TYPE 348  38
  AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE 
                           658                            386 
  AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE 
                            90                             38 
$`AMP PEAK 12(8Q24.21) MUTATED`
TCGA-3C-AAAU TCGA-3C-AALI TCGA-3C-AALJ TCGA-4H-AAAK TCGA-5T-A9QA TCGA-A1-A0SD 
      129.14       131.67        42.81        11.44         9.96        14.37 
TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SJ TCGA-A1-A0SK 
       43.43        48.10        14.27        47.24        13.68        31.79 
TCGA-A1-A0SN TCGA-A1-A0SP TCGA-A2-A04N TCGA-A2-A04P TCGA-A2-A04Q TCGA-A2-A04R 
       39.32        19.20       104.81        18.02        78.41       121.94 
TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04V TCGA-A2-A04Y TCGA-A2-A0CL TCGA-A2-A0CM 
       73.84        87.25        63.12        36.13        99.12        24.79 
TCGA-A2-A0CP TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0CX 
       92.48        75.25         5.19        98.99       107.93        56.81 
TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0D4 TCGA-A2-A0EO 
       67.33        34.55        33.76        61.58        25.22        80.28 
TCGA-A2-A0EQ TCGA-A2-A0EU TCGA-A2-A0EX TCGA-A2-A0EY TCGA-A2-A0SV TCGA-A2-A0SW 
       79.76        34.29        24.72        63.29        27.12        44.88 
TCGA-A2-A0SX TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T5 
       50.43        17.52        17.13         8.38        49.84        17.46 
TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A0YJ TCGA-A2-A0YM 
       18.90        20.75        21.90        21.67        18.61        31.73 
TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1FX TCGA-A2-A1G0 TCGA-A2-A1G1 
       23.77        23.47        17.36        60.72        20.25        19.20 
TCGA-A2-A1G4 TCGA-A2-A259 TCGA-A2-A25B TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A3KD 
       19.56        52.47        42.44        18.15       105.34        39.65 
TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XU TCGA-A2-A3XX TCGA-A2-A3XY TCGA-A2-A3Y0 
       33.93        83.01        29.98        47.31        34.98        38.37 
TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CD 
        7.30        24.39        26.96        21.14        21.90        38.30 
TCGA-A7-A0CE TCGA-A7-A0CJ TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DC TCGA-A7-A13D 
       35.31        30.61        37.45        35.67        29.79        31.73 
TCGA-A7-A13E TCGA-A7-A13F TCGA-A7-A26F TCGA-A7-A26G TCGA-A7-A26H TCGA-A7-A26I 
       20.19        25.15        24.26        23.74        23.80        21.73 
TCGA-A7-A26J TCGA-A7-A2KD TCGA-A7-A3J0 TCGA-A7-A426 TCGA-A7-A4SA TCGA-A7-A4SD 
       20.61        22.32        10.29        11.97        14.93        14.50 
TCGA-A7-A4SE TCGA-A7-A4SF TCGA-A7-A5ZV TCGA-A7-A5ZW TCGA-A7-A6VV TCGA-A7-A6VX 
       21.17        17.92        12.10        10.72        10.29        10.42 
TCGA-A7-A6VY TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06R TCGA-A8-A06T 
        8.75        13.02        13.02         1.02        17.98        53.06 
TCGA-A8-A06U TCGA-A8-A06X TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A076 
       29.03        31.00        26.01         1.02        17.03        53.98 
TCGA-A8-A079 TCGA-A8-A07B TCGA-A8-A07E TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I 
        9.01        43.00        19.99        18.97        18.97        14.01 
TCGA-A8-A07L TCGA-A8-A07O TCGA-A8-A07P TCGA-A8-A07R TCGA-A8-A07U TCGA-A8-A07W 
       32.05         9.99        10.98         8.98        24.99         9.99 
TCGA-A8-A082 TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08B TCGA-A8-A08C TCGA-A8-A08F 
       18.05        36.95        13.02        38.01        28.96        33.01 
TCGA-A8-A08G TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08P TCGA-A8-A08R 
       19.96        12.00        37.05         9.99        31.00         0.99 
TCGA-A8-A08S TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A091 TCGA-A8-A092 TCGA-A8-A093 
       33.01       112.08        43.00        33.01        30.97        17.95 
TCGA-A8-A097 TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09C TCGA-A8-A09D TCGA-A8-A09E 
       12.00         9.99        12.00         1.02        50.04        49.05 
TCGA-A8-A09I TCGA-A8-A09K TCGA-A8-A09M TCGA-A8-A09N TCGA-A8-A09Q TCGA-A8-A09R 
       45.07        29.98        33.07         1.02        25.02         8.98 
TCGA-A8-A09T TCGA-A8-A09W TCGA-A8-A09X TCGA-A8-A0A2 TCGA-A8-A0A7 TCGA-A8-A0A9 
       19.04         0.99        14.01        19.04         0.99        27.02 
TCGA-A8-A0AB TCGA-AC-A23E TCGA-AC-A23G TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2BK 
       17.03         2.37        10.85         5.72         1.48        38.53 
TCGA-AC-A2BM TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A2QH TCGA-AC-A2QJ TCGA-AC-A3QP 
       99.35        26.04        50.70        33.04         2.27        22.19 
TCGA-AC-A3W5 TCGA-AC-A3YI TCGA-AC-A62V TCGA-AC-A62X TCGA-AC-A6IW TCGA-AC-A6NO 
       16.57        23.24        11.44        13.71        13.58         1.68 
TCGA-AC-A7VB TCGA-AC-A7VC TCGA-AC-A8OP TCGA-AC-A8OQ TCGA-AN-A03X TCGA-AN-A03Y 
        8.22         0.03        20.19         1.12         0.33         0.33 
TCGA-AN-A041 TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A04D TCGA-AN-A0AJ 
        0.23         0.62         2.96         1.78         1.71         9.96 
TCGA-AN-A0AK TCGA-AN-A0AL TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0FJ 
        7.36         6.51         0.16         0.33         0.33         7.96 
TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FT TCGA-AN-A0FW TCGA-AN-A0FX TCGA-AN-A0FY 
        7.00         7.59         7.04         0.36         0.33         0.33 
TCGA-AN-A0FZ TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XS TCGA-AN-A0XU 
        0.33         0.33         0.33        12.33         0.33         0.33 
TCGA-AN-A0XV TCGA-AO-A03M TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A03T 
        5.33        61.35        81.63        95.70        68.75        47.87 
TCGA-AO-A03V TCGA-AO-A0J3 TCGA-AO-A0J4 TCGA-AO-A0J7 TCGA-AO-A0JB TCGA-AO-A0JE 
       29.13        21.40        52.18        20.32        50.70        76.77 
TCGA-AO-A0JI TCGA-AO-A0JL TCGA-AO-A0JM TCGA-AO-A124 TCGA-AO-A128 TCGA-AO-A129 
       50.24        55.33        71.80       102.58       106.78       108.03 
TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A12E TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A1KP 
       98.27        64.04        57.30        48.36        41.62        82.62 
TCGA-AO-A1KQ TCGA-AO-A1KR TCGA-AO-A1KS TCGA-AO-A1KT TCGA-AQ-A04H TCGA-AQ-A04J 
       61.87        70.39         0.53        17.79        24.79        26.93 
TCGA-AQ-A04L TCGA-AQ-A0Y5 TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AQ-A54N TCGA-AQ-A54O 
      130.09         5.65        15.62        32.52         2.56        32.91 
TCGA-AR-A0TP TCGA-AR-A0TQ TCGA-AR-A0TS TCGA-AR-A0TT TCGA-AR-A0TV TCGA-AR-A0TW 
      111.32        73.64        74.79        86.66        42.35        98.93 
TCGA-AR-A0TY TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A0U2 TCGA-AR-A0U3 TCGA-AR-A0U4 
       55.86        65.36       101.95        83.87       114.02        85.97 
TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AN TCGA-AR-A1AP TCGA-AR-A1AQ 
       61.84        52.77        51.25        43.73        39.98        43.07 
TCGA-AR-A1AU TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24K 
       76.21        63.62        62.14        33.73       160.90        50.89 
TCGA-AR-A24N TCGA-AR-A24Q TCGA-AR-A24R TCGA-AR-A24S TCGA-AR-A24U TCGA-AR-A24V 
       78.51       104.28        87.22        97.84        53.36        85.35 
TCGA-AR-A24W TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A251 TCGA-AR-A254 TCGA-AR-A255 
       50.96        79.00        89.00        78.48        72.76        58.92 
TCGA-AR-A256 TCGA-AR-A2LH TCGA-AR-A2LK TCGA-AR-A2LL TCGA-AR-A2LO TCGA-AR-A2LR 
       93.83        20.25        54.21        66.15        39.39        20.38 
TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 
       16.04        20.45        10.59        77.62       143.38       149.59 
TCGA-B6-A0IA TCGA-B6-A0IB TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0IJ 
      220.90       129.57        65.72       146.50       112.37       176.98 
TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RG 
       18.77       126.12        84.59       140.88       211.56        68.45 
TCGA-B6-A0RH TCGA-B6-A0RM TCGA-B6-A0RP TCGA-B6-A0RS TCGA-B6-A0RT TCGA-B6-A0RU 
      189.01        78.02       102.77       100.70        89.46       131.21 
TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WY TCGA-B6-A0X1 
      157.41        97.48        18.35        21.47       113.79       186.48 
TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A1KN TCGA-B6-A2IU 
       68.94        58.88        43.59       101.52       139.17       170.17 
TCGA-B6-A401 TCGA-B6-A402 TCGA-B6-A408 TCGA-B6-A40C TCGA-BH-A0AU TCGA-BH-A0AV 
       85.35        74.99        68.12        71.15        24.53        59.84 
TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0B2 TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B6 
       20.45        25.55        40.83        39.55        39.16        56.94 
TCGA-BH-A0B7 TCGA-BH-A0BA TCGA-BH-A0BD TCGA-BH-A0BF TCGA-BH-A0BG TCGA-BH-A0BL 
       56.98        37.22        18.21        25.71        24.85        44.05 
TCGA-BH-A0BP TCGA-BH-A0BT TCGA-BH-A0BW TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C1 
       48.69        45.57        11.67        49.05        41.75        44.02 
TCGA-BH-A0DD TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DL TCGA-BH-A0DP TCGA-BH-A0DQ 
       45.83        38.01        22.13        48.23        15.65         3.22 
TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E2 
        2.56        38.47        16.27         4.41        15.68        14.30 
TCGA-BH-A0E7 TCGA-BH-A0EE TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H6 
       44.81        31.00        30.35        10.78        15.16        24.56 
TCGA-BH-A0H7 TCGA-BH-A0H9 TCGA-BH-A0HB TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW 
       23.08        41.00        26.50        36.85        12.89        51.32 
TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0RX TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A0WA 
       27.25        50.79         5.59        42.35        44.81        23.05 
TCGA-BH-A18I TCGA-BH-A18L TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18Q TCGA-BH-A18R 
        7.23        26.66        72.56        37.74        55.63        37.55 
TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1EN TCGA-BH-A1EO TCGA-BH-A1ES 
        7.36        51.39        51.16        69.93        91.99       113.82 
TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1EX TCGA-BH-A1EY TCGA-BH-A1F2 
       42.28        12.00        55.69        49.58        17.69        31.53 
TCGA-BH-A1F5 TCGA-BH-A1F6 TCGA-BH-A1FB TCGA-BH-A1FC TCGA-BH-A1FD TCGA-BH-A1FE 
       89.16        97.48       120.62       114.15        33.17        74.73 
TCGA-BH-A1FG TCGA-BH-A1FM TCGA-BH-A1FN TCGA-BH-A1FU TCGA-BH-A202 TCGA-BH-A203 
      122.89        45.63        72.07        72.07        26.14        38.60 
TCGA-BH-A204 TCGA-BH-A209 TCGA-BH-A42V TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-BH-A6R8 
       83.31       130.16         8.94        18.64        23.51         9.63 
TCGA-BH-A8FZ TCGA-C8-A12L TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12P 
       18.87        11.93        11.77        11.77        12.66        11.77 
TCGA-C8-A12U TCGA-C8-A12V TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A12Z TCGA-C8-A130 
       12.66        12.66        12.66        12.66         0.39         3.16 
TCGA-C8-A131 TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A135 TCGA-C8-A137 TCGA-C8-A138 
        2.24         1.87         1.12         1.05         4.11         4.08 
TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HM TCGA-C8-A1HN 
       11.34        11.28         0.16        12.03         2.30         3.25 
TCGA-C8-A26W TCGA-C8-A26X TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A275 TCGA-C8-A278 
        0.23         0.36         8.28         9.67         0.03         9.50 
TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A8HR TCGA-D8-A13Y TCGA-D8-A141 TCGA-D8-A142 
       12.20         0.99        13.41        11.90        20.58        13.97 
TCGA-D8-A143 TCGA-D8-A147 TCGA-D8-A1J9 TCGA-D8-A1JC TCGA-D8-A1JD TCGA-D8-A1JF 
       14.17        19.20        17.49        15.78        18.15        12.03 
TCGA-D8-A1JG TCGA-D8-A1JH TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JM 
       12.03        14.01        20.09        20.12        20.09        19.40 
TCGA-D8-A1JP TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X9 
       21.01        13.32        14.70        18.58        17.79        23.90 
TCGA-D8-A1XB TCGA-D8-A1XD TCGA-D8-A1XF TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XL 
       18.15        17.16        15.22        21.83        14.50        19.92 
TCGA-D8-A1XQ TCGA-D8-A1XS TCGA-D8-A1XU TCGA-D8-A1XW TCGA-D8-A1XY TCGA-D8-A1XZ 
       16.41        16.31        12.99        12.66        16.54        15.32 
TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 TCGA-D8-A1Y3 TCGA-D8-A27F TCGA-D8-A27H 
       15.52         9.93        14.24        14.14        16.04        13.05 
TCGA-D8-A27I TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27R TCGA-D8-A27V 
       14.43        16.41        13.48         4.80        10.09        12.53 
TCGA-D8-A27W TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A108 
       12.26        18.51        21.67        43.00        34.42        27.52 
TCGA-E2-A109 TCGA-E2-A10C TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14R 
       46.59        40.11        47.15        44.68        40.96        38.60 
TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14W TCGA-E2-A14X 
       33.17        33.30        43.33        34.26        32.02        31.96 
TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A153 TCGA-E2-A154 
       28.60        18.51        25.41        27.12        23.24        19.43 
TCGA-E2-A158 TCGA-E2-A159 TCGA-E2-A15A TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15E 
       14.79        25.05        23.34        22.82        17.29        20.71 
TCGA-E2-A15F TCGA-E2-A15H TCGA-E2-A15J TCGA-E2-A15M TCGA-E2-A15O TCGA-E2-A15S 
       21.63        12.92        19.40        11.05        13.02        14.07 
TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BD 
       14.99        60.53        53.62        32.35        28.50        17.10 
TCGA-E2-A1IH TCGA-E2-A1II TCGA-E2-A1IN TCGA-E2-A1IO TCGA-E2-A1L7 TCGA-E2-A1LA 
       33.73        33.70        22.19        20.98        27.42        24.59 
TCGA-E2-A1LE TCGA-E2-A1LG TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A2P5 
       28.90        18.87       106.75       102.61         8.75        16.93 
TCGA-E2-A56Z TCGA-E2-A573 TCGA-E2-A574 TCGA-E2-A576 TCGA-E2-A9RU TCGA-E9-A1N5 
        8.28        34.92        26.56        34.29        12.85        36.82 
TCGA-E9-A1N6 TCGA-E9-A1N8 TCGA-E9-A1N9 TCGA-E9-A1NA TCGA-E9-A1NC TCGA-E9-A1NE 
       13.48        12.00        13.12        36.56        39.55        35.77 
TCGA-E9-A1NF TCGA-E9-A1NI TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R6 
       35.24         9.86        34.95         2.56         6.12         2.76 
TCGA-E9-A1R7 TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RE TCGA-E9-A1RG 
       21.21        32.09        32.09        40.24        34.65        21.27 
TCGA-E9-A1RH TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A22G 
       34.59        39.09        22.75        41.03        12.89        23.51 
TCGA-E9-A243 TCGA-E9-A244 TCGA-E9-A247 TCGA-E9-A248 TCGA-E9-A295 TCGA-E9-A2JS 
       17.06         0.69        27.22         1.94         0.72        29.72 
TCGA-E9-A3QA TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5FL 
       30.18        15.72        12.33        23.84        14.70         0.79 
TCGA-E9-A5UP TCGA-EW-A1IY TCGA-EW-A1J1 TCGA-EW-A1J6 TCGA-EW-A1OW TCGA-EW-A1OY 
       14.40         8.48        18.90        28.77        22.82        29.85 
TCGA-EW-A1OZ TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P3 TCGA-EW-A1P4 TCGA-EW-A1P5 
       40.41        41.13        39.78        52.96        29.82        23.11 
TCGA-EW-A1P6 TCGA-EW-A1P8 TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A1PF 
       18.48         7.86        19.99         6.15        13.94        14.43 
TCGA-EW-A1PH TCGA-EW-A2FV TCGA-EW-A3U0 TCGA-GI-A2C9 TCGA-GM-A2DA TCGA-GM-A2DB 
       19.96        25.91        17.49       109.87       216.76        79.10 
TCGA-GM-A2DC TCGA-GM-A2DD TCGA-GM-A2DF TCGA-GM-A2DO TCGA-GM-A3XL TCGA-GM-A5PV 
       83.34        75.02        70.85        85.35        69.30        13.55 
TCGA-HN-A2NL TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LD-A7W5 TCGA-LL-A441 TCGA-LL-A5YM 
        2.60        11.84        11.57         7.10        11.44        15.32 
TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LL-A5YP TCGA-LL-A6FR TCGA-LL-A73Y TCGA-LL-A73Z 
       14.70        14.47        14.79        16.08        15.68         7.46 
TCGA-LL-A740 TCGA-LL-A7SZ TCGA-LL-A7T0 TCGA-LL-A8F5 TCGA-LL-A9Q3 TCGA-OL-A5D7 
       14.50        14.70        12.36        14.73        14.07        58.52 
TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RW TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66I 
       31.99        58.62        36.36        22.32        20.38        23.47 
TCGA-OL-A66N TCGA-OL-A66P TCGA-OL-A6VO TCGA-OL-A6VR TCGA-PE-A5DC TCGA-PL-A8LZ 
       26.04        14.07        28.21        40.11        47.01         9.93 
TCGA-S3-A6ZF TCGA-S3-A6ZG TCGA-S3-A6ZH TCGA-S3-AA10 TCGA-S3-AA12 TCGA-UL-AAZ6 
       16.50        13.12        16.93        15.39        15.35        17.03 
TCGA-UU-A93S TCGA-W8-A86G TCGA-XX-A899 TCGA-Z7-A8R6 
        3.81        11.41        15.35       107.05 

$`AMP PEAK 12(8Q24.21) WILD-TYPE`
TCGA-3C-AALK TCGA-5L-AAT0 TCGA-5L-AAT1 TCGA-A1-A0SB TCGA-A1-A0SI TCGA-A1-A0SM 
       40.14        48.56        48.36         8.52        20.88         7.96 
TCGA-A1-A0SO TCGA-A1-A0SQ TCGA-A2-A04W TCGA-A2-A04X TCGA-A2-A0CK TCGA-A2-A0CO 
       28.01        18.21       101.98        55.43       136.73       114.81 
TCGA-A2-A0CQ TCGA-A2-A0CR TCGA-A2-A0CS TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EP 
       88.60       107.93        75.55       101.72       134.40       107.61 
TCGA-A2-A0ER TCGA-A2-A0ES TCGA-A2-A0ET TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0ST 
       74.40        72.00        35.05        31.82        61.94        99.19 
TCGA-A2-A0SU TCGA-A2-A0SY TCGA-A2-A0T4 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YE 
       54.64        44.28        20.52        32.55        25.28        18.21 
TCGA-A2-A0YF TCGA-A2-A0YI TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A1FZ TCGA-A2-A1G6 
       50.47        49.48        19.33        48.46        22.45        16.47 
TCGA-A2-A25A TCGA-A2-A25C TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3XV TCGA-A2-A3XW 
      107.70        17.19        10.59        20.88        32.75        49.48 
TCGA-A2-A3XZ TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0DB 
       50.37        21.30        23.21        34.29        35.47        33.11 
TCGA-A7-A13G TCGA-A7-A13H TCGA-A7-A26E TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J1 
       23.61        29.56        31.36        11.34        10.59        11.28 
TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A4SB TCGA-A7-A56D TCGA-A7-A5ZX TCGA-A7-A6VW 
       13.41        14.70        13.74        14.73        11.05         9.37 
TCGA-A8-A07J TCGA-A8-A07S TCGA-A8-A07Z TCGA-A8-A084 TCGA-A8-A08A TCGA-A8-A08O 
       12.00         7.99        45.07        15.06         0.99        31.00 
TCGA-A8-A08Z TCGA-A8-A095 TCGA-A8-A099 TCGA-A8-A09V TCGA-A8-A0A1 TCGA-A8-A0A4 
       40.01        41.98         9.99        15.02        12.00        13.02 
TCGA-A8-A0A6 TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A2FB TCGA-AC-A2FF TCGA-AC-A2FG 
       21.04        38.04         0.95        40.57        55.43        36.99 
TCGA-AC-A2FK TCGA-AC-A2QI TCGA-AC-A3BB TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3TN 
       38.79         0.92        32.45        16.31        14.83        14.99 
TCGA-AC-A3W6 TCGA-AC-A3YJ TCGA-AC-A5XS TCGA-AC-A62Y TCGA-AC-A6IV TCGA-AC-A6IX 
       19.79        24.79         1.55        17.42        18.67        12.26 
TCGA-AC-A8OR TCGA-AC-A8OS TCGA-AN-A046 TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0FF 
        1.32         2.30         0.33         0.33         6.44         5.65 
TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FV TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XT 
        7.17         6.28         0.33         0.30         0.33         0.33 
TCGA-AN-A0XW TCGA-AO-A03L TCGA-AO-A03N TCGA-AO-A03U TCGA-AO-A0J2 TCGA-AO-A0J5 
        5.59        80.28        66.77        58.95        32.78        26.04 
TCGA-AO-A0J6 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JC TCGA-AO-A0JD 
       37.48        22.36        53.03        21.53        50.86        72.00 
TCGA-AO-A0JF TCGA-AO-A0JG TCGA-AO-A0JJ TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A12A 
       21.37        26.24        62.04        99.25       108.72        90.58 
TCGA-AO-A12H TCGA-AO-A1KO TCGA-AQ-A7U7 TCGA-AR-A0TR TCGA-AR-A0TX TCGA-AR-A0TZ 
       28.37        14.73        19.20         5.26        64.83       107.24 
TCGA-AR-A1AH TCGA-AR-A1AL TCGA-AR-A1AM TCGA-AR-A1AO TCGA-AR-A1AR TCGA-AR-A1AS 
       75.55        48.82        76.11        43.56        17.23        37.81 
TCGA-AR-A1AV TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24T 
       61.28        94.22        96.89        84.20         2.76        76.01 
TCGA-AR-A24X TCGA-AR-A252 TCGA-AR-A2LE TCGA-AR-A2LJ TCGA-AR-A2LM TCGA-AR-A2LN 
       83.77        73.18       143.21        62.86        52.11        38.17 
TCGA-AR-A2LQ TCGA-AR-A5QM TCGA-B6-A0I9 TCGA-B6-A0IC TCGA-B6-A0IO TCGA-B6-A0IP 
       40.54        54.74        12.13        50.70       110.14       110.93 
TCGA-B6-A0RI TCGA-B6-A0RL TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RQ TCGA-B6-A0WT 
      234.28        81.17       172.96       162.05       140.48       188.68 
TCGA-B6-A0WV TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X4 TCGA-B6-A1KI TCGA-B6-A40B 
       79.63       129.57       129.70        28.27        73.51       103.63 
TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B5 TCGA-BH-A0B9 TCGA-BH-A0BC TCGA-BH-A0BJ 
       28.50        46.95        48.36        51.68        32.02        21.70 
TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BV 
       61.68        35.67        27.19        53.69        53.95        49.94 
TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DK TCGA-BH-A0DO 
       48.13        42.90        31.17        23.44        13.91        17.26 
TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0E6 TCGA-BH-A0E9 TCGA-BH-A0EA TCGA-BH-A0EB 
       67.86        47.41         9.63        46.19        32.58        24.49 
TCGA-BH-A0EI TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0HA TCGA-BH-A0HI TCGA-BH-A0HK 
       24.43        37.78        35.51        52.96        20.38         5.85 
TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A18F TCGA-BH-A18G 
        2.50        13.61        23.93        24.95         8.81         2.01 
TCGA-BH-A18J TCGA-BH-A18K TCGA-BH-A18P TCGA-BH-A18S TCGA-BH-A1ET TCGA-BH-A1F0 
       20.12        90.84        30.28        66.05        82.85        25.81 
TCGA-BH-A1F8 TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FR TCGA-BH-A201 
       24.66        36.92        63.35        55.00       144.59        28.14 
TCGA-BH-A208 TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U 
       57.83        10.65         6.44        20.12        10.52       109.28 
TCGA-BH-A6R9 TCGA-BH-A8FY TCGA-BH-A8G0 TCGA-BH-AB28 TCGA-C8-A12Q TCGA-C8-A1HE 
        5.26         9.70        21.76         9.44        12.66        12.33 
TCGA-C8-A1HF TCGA-C8-A1HL TCGA-C8-A26V TCGA-C8-A26Y TCGA-C8-A274 TCGA-C8-A3M7 
       10.92        10.42         0.30         0.43         9.53         0.03 
TCGA-C8-A3M8 TCGA-C8-A8HP TCGA-C8-A8HQ TCGA-C8-A9FZ TCGA-D8-A13Z TCGA-D8-A140 
        0.23        13.02        12.49        19.46        20.88        13.25 
TCGA-D8-A145 TCGA-D8-A146 TCGA-D8-A1J8 TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JE 
       13.48        21.14        14.17        16.50        18.71        18.90 
TCGA-D8-A1JI TCGA-D8-A1JN TCGA-D8-A1JS TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1XA 
       18.97        20.38        12.20        16.73        25.74        27.58 
TCGA-D8-A1XC TCGA-D8-A1XG TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XR TCGA-D8-A1XT 
       12.39        14.73        17.69        15.55        15.85         6.35 
TCGA-D8-A1XV TCGA-D8-A27E TCGA-D8-A27G TCGA-D8-A27K TCGA-D8-A27P TCGA-D8-A27T 
       15.16        17.42        13.45         9.44         0.76        13.08 
TCGA-D8-A3Z5 TCGA-D8-A73U TCGA-D8-A73W TCGA-D8-A73X TCGA-E2-A10A TCGA-E2-A10B 
       33.37        16.18         8.02        12.10        40.41        37.51 
TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14Q TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A15G 
       28.44        28.87        38.24        21.04        23.87        18.21 
TCGA-E2-A15I TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A1B1 
       17.42         9.04        20.58        19.56        17.06        53.03 
TCGA-E2-A1B4 TCGA-E2-A1BC TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1IJ 
       33.01        16.47        38.30        37.41        32.78        28.44 
TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L8 TCGA-E2-A1L9 
       22.65         3.88        11.08        54.18        39.62        19.66 
TCGA-E2-A1LB TCGA-E2-A1LL TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A570 TCGA-E9-A1N3 
       40.47        43.04         5.52        15.72        30.61        34.82 
TCGA-E9-A1N4 TCGA-E9-A1ND TCGA-E9-A1NG TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R5 
       32.88        12.59        25.84        11.90        28.27         3.02 
TCGA-E9-A1RD TCGA-E9-A1RF TCGA-E9-A1RI TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A228 
        1.12         6.58        35.64        34.13        32.05        12.53 
TCGA-E9-A229 TCGA-E9-A22H TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A2JT TCGA-E9-A3HO 
       13.32        20.71         7.13        24.56         0.76        26.07 
TCGA-E9-A3Q9 TCGA-E9-A5UO TCGA-E9-A6HE TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IZ 
       18.41        13.81        15.39        12.20        39.72        18.21 
TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J5 TCGA-EW-A1OV TCGA-EW-A1OX TCGA-EW-A1P7 
       13.25        16.57        15.68        25.94        29.95        30.08 
TCGA-EW-A1PA TCGA-EW-A1PE TCGA-EW-A1PG TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FW 
       18.90        10.52        34.55        55.00        52.73        22.09 
TCGA-EW-A3E8 TCGA-EW-A423 TCGA-EW-A424 TCGA-GI-A2C8 TCGA-GM-A2D9 TCGA-GM-A2DH 
       34.03        10.16        23.51         7.40        59.57        72.10 
TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A3NW 
       85.15        86.96       115.69       106.06       101.62       110.50 
TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PX TCGA-HN-A2OB 
       38.20        43.73        66.38        72.03        18.12        62.43 
TCGA-LD-A66U TCGA-LD-A74U TCGA-LD-A7W6 TCGA-LD-A9QF TCGA-LL-A440 TCGA-LL-A442 
       21.24        13.22        13.28        10.62        24.95        10.95 
TCGA-LL-A50Y TCGA-LL-A5YL TCGA-LL-A6FP TCGA-LL-A6FQ TCGA-LQ-A4E4 TCGA-MS-A51U 
       25.05        17.06        22.26         2.63        27.91        22.39 
TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5RU TCGA-OL-A5RV TCGA-OL-A5RX TCGA-OL-A5RY 
        2.10        36.30        40.08        34.92        28.87        24.72 
TCGA-OL-A66H TCGA-OL-A66J TCGA-OL-A66K TCGA-OL-A66L TCGA-OL-A66O TCGA-OL-A6VQ 
       26.70        65.62        41.92        42.77        17.36        19.73 
TCGA-OL-A97C TCGA-PE-A5DD TCGA-PE-A5DE TCGA-PL-A8LX TCGA-PL-A8LY TCGA-S3-AA0Z 
        8.91        64.21        86.96         0.16         0.26        16.80 
TCGA-S3-AA11 TCGA-S3-AA14 TCGA-S3-AA15 TCGA-S3-AA17 TCGA-WT-AB41 TCGA-WT-AB44 
       13.84        14.96        13.84        13.94        52.96        29.03 
TCGA-XX-A89A TCGA-Z7-A8R5 
       16.04       108.07 

  AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE 
                          0.03                           0.03 
  AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE 
                        220.90                         234.28 
  AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE 
                         23.82                          24.95 
[1] "0.0 - 220.9 (23.8)" "0.0 - 234.3 (24.9)"
[1] "hr=" "1.4"
D12V2, continuous
                                vv
clus                             STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  AMP PEAK 12(8Q24.21) MUTATED        50       45        3        1       233
  AMP PEAK 12(8Q24.21) WILD-TYPE      39       36        5        2       120
                                vv
clus                             STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  AMP PEAK 12(8Q24.21) MUTATED         150         2         97         20
  AMP PEAK 12(8Q24.21) WILD-TYPE        95         0         53          9
                                vv
clus                             STAGE IIIC STAGE IV STAGE TIS STAGE X
  AMP PEAK 12(8Q24.21) MUTATED           40       12         1      11
  AMP PEAK 12(8Q24.21) WILD-TYPE         23        8         0       2
D12V3, multiclass
            clus
vv           AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  STAGE I                              50                             39
  STAGE IA                             45                             36
  STAGE IB                              3                              5
  STAGE II                              1                              2
  STAGE IIA                           233                            120
  STAGE IIB                           150                             95
  STAGE III                             2                              0
  STAGE IIIA                           97                             53
  STAGE IIIB                           20                              9
  STAGE IIIC                           40                             23
  STAGE IV                             12                              8
  STAGE TIS                             1                              0
  STAGE X                              11                              2
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              T1  T2  T3  T4
  AMP PEAK 12(8Q24.21) MUTATED   156 407  76  25
  AMP PEAK 12(8Q24.21) WILD-TYPE 116 209  54  15
D12V4, multiclass
    clus
vv   AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  T1                          156                            116
  T2                          407                            209
  T3                           76                             54
  T4                           25                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              N0  N1  N2  N3
  AMP PEAK 12(8Q24.21) MUTATED   315 209  81  48
  AMP PEAK 12(8Q24.21) WILD-TYPE 186 141  36  27
D12V5, multiclass
    clus
vv   AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  N0                          315                            186
  N1                          209                            141
  N2                           81                             36
  N3                           48                             27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D12V6, binary
                                cls
clus                               0   1
  AMP PEAK 12(8Q24.21) MUTATED   570  12
  AMP PEAK 12(8Q24.21) WILD-TYPE 309   9
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 12(8Q24.21) MUTATED    570   12
  AMP PEAK 12(8Q24.21) WILD-TYPE  309    9
   clus
vv  AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  0                          570                            309
  1                           12                              9
[1] 2 2
[1] FALSE
D12V7, binary
                                cls
clus                               0   1
  AMP PEAK 12(8Q24.21) MUTATED   659   9
  AMP PEAK 12(8Q24.21) WILD-TYPE 392   2
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 12(8Q24.21) MUTATED    659    9
  AMP PEAK 12(8Q24.21) WILD-TYPE  392    2
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  FEMALE                          659                            392
  MALE                              9                              2
[1] 2 2
[1] FALSE
                                vv
clus                             INFILTRATING CARCINOMA NOS
  AMP PEAK 12(8Q24.21) MUTATED                            1
  AMP PEAK 12(8Q24.21) WILD-TYPE                          0
                                vv
clus                             INFILTRATING DUCTAL CARCINOMA
  AMP PEAK 12(8Q24.21) MUTATED                             539
  AMP PEAK 12(8Q24.21) WILD-TYPE                           224
                                vv
clus                             INFILTRATING LOBULAR CARCINOMA
  AMP PEAK 12(8Q24.21) MUTATED                               68
  AMP PEAK 12(8Q24.21) WILD-TYPE                            124
                                vv
clus                             MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  AMP PEAK 12(8Q24.21) MUTATED                     6                     2
  AMP PEAK 12(8Q24.21) WILD-TYPE                   0                     2
                                vv
clus                             MIXED HISTOLOGY (PLEASE SPECIFY)
  AMP PEAK 12(8Q24.21) MUTATED                                 17
  AMP PEAK 12(8Q24.21) WILD-TYPE                               13
                                vv
clus                             MUCINOUS CARCINOMA OTHER  SPECIFY
  AMP PEAK 12(8Q24.21) MUTATED                    5             29
  AMP PEAK 12(8Q24.21) WILD-TYPE                 12             19
D12V8, multiclass
                                  clus
vv                                 AMP PEAK 12(8Q24.21) MUTATED
  INFILTRATING CARCINOMA NOS                                  1
  INFILTRATING DUCTAL CARCINOMA                             539
  INFILTRATING LOBULAR CARCINOMA                             68
  MEDULLARY CARCINOMA                                         6
  METAPLASTIC CARCINOMA                                       2
  MIXED HISTOLOGY (PLEASE SPECIFY)                           17
  MUCINOUS CARCINOMA                                          5
  OTHER  SPECIFY                                             29
                                  clus
vv                                 AMP PEAK 12(8Q24.21) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                    0
  INFILTRATING DUCTAL CARCINOMA                               224
  INFILTRATING LOBULAR CARCINOMA                              124
  MEDULLARY CARCINOMA                                           0
  METAPLASTIC CARCINOMA                                         2
  MIXED HISTOLOGY (PLEASE SPECIFY)                             13
  MUCINOUS CARCINOMA                                           12
  OTHER  SPECIFY                                               19
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D12V9, binary
                                cls
clus                               0   1
  AMP PEAK 12(8Q24.21) MUTATED   193 475
  AMP PEAK 12(8Q24.21) WILD-TYPE  95 299
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 12(8Q24.21) MUTATED    193  475
  AMP PEAK 12(8Q24.21) WILD-TYPE   95  299
     clus
vv    AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  NO                           193                             95
  YES                          475                            299
[1] 2 2
[1] FALSE
D12V10, continuous
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK 12(8Q24.21) MUTATED                                  1    41
  AMP PEAK 12(8Q24.21) WILD-TYPE                                0    19
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 12(8Q24.21) MUTATED                         123   432
  AMP PEAK 12(8Q24.21) WILD-TYPE                        47   304
D12V11, multiclass
                                  clus
vv                                 AMP PEAK 12(8Q24.21) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            1
  ASIAN                                                      41
  BLACK OR AFRICAN AMERICAN                                 123
  WHITE                                                     432
                                  clus
vv                                 AMP PEAK 12(8Q24.21) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              0
  ASIAN                                                        19
  BLACK OR AFRICAN AMERICAN                                    47
  WHITE                                                       304
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D12V12, binary
                                cls
clus                               0   1
  AMP PEAK 12(8Q24.21) MUTATED    19 532
  AMP PEAK 12(8Q24.21) WILD-TYPE  19 326
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 12(8Q24.21) MUTATED     19  532
  AMP PEAK 12(8Q24.21) WILD-TYPE   19  326
                        clus
vv                       AMP PEAK 12(8Q24.21) MUTATED
  HISPANIC OR LATINO                               19
  NOT HISPANIC OR LATINO                          532
                        clus
vv                       AMP PEAK 12(8Q24.21) WILD-TYPE
  HISPANIC OR LATINO                                 19
  NOT HISPANIC OR LATINO                            326
[1] 2 2
[1] FALSE

Clustering(13) Variable = AMP PEAK 13(10P15.1) MUTATION ANALYSIS
D13V1, survival
                                sevent
clus2                              0   1
  AMP PEAK 13(10P15.1) MUTATED   249  45
  AMP PEAK 13(10P15.1) WILD-TYPE 667  83
  AMP PEAK 13(10P15.1) MUTATED AMP PEAK 13(10P15.1) WILD-TYPE 
                           294                            750 
  AMP PEAK 13(10P15.1) MUTATED AMP PEAK 13(10P15.1) WILD-TYPE 
                            45                             83 
$`AMP PEAK 13(10P15.1) MUTATED`
TCGA-5T-A9QA TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SJ TCGA-A1-A0SO 
        9.96        14.37        43.43        48.10        13.68        28.01 
TCGA-A2-A04P TCGA-A2-A04Q TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A0CM TCGA-A2-A0D0 
       18.02        78.41        73.84        87.25        24.79        67.33 
TCGA-A2-A0D2 TCGA-A2-A0EQ TCGA-A2-A0EV TCGA-A2-A0ST TCGA-A2-A0SW TCGA-A2-A0SX 
       33.76        79.76        31.82        99.19        44.88        50.43 
TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T7 TCGA-A2-A0YE 
       17.52        17.13         8.38        49.84        20.75        18.21 
TCGA-A2-A0YG TCGA-A2-A0YJ TCGA-A2-A0YM TCGA-A2-A1G1 TCGA-A2-A25B TCGA-A2-A3XS 
       21.90        18.61        31.73        19.20        42.44        33.93 
TCGA-A2-A3XT TCGA-A2-A3XX TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A7-A0DA TCGA-A7-A13D 
       83.01        47.31        38.37         7.30        35.67        31.73 
TCGA-A7-A13E TCGA-A7-A26F TCGA-A7-A26G TCGA-A7-A26I TCGA-A7-A4SA TCGA-A7-A4SD 
       20.19        24.26        23.74        21.73        14.93        14.50 
TCGA-A7-A4SF TCGA-A7-A56D TCGA-A7-A5ZV TCGA-A7-A6VV TCGA-A7-A6VW TCGA-A7-A6VX 
       17.92        14.73        12.10        10.29         9.37        10.42 
TCGA-A7-A6VY TCGA-A8-A06O TCGA-A8-A06Q TCGA-A8-A06R TCGA-A8-A06U TCGA-A8-A06X 
        8.75        13.02         1.02        17.98        29.03        31.00 
TCGA-A8-A07B TCGA-A8-A07E TCGA-A8-A07G TCGA-A8-A07R TCGA-A8-A07U TCGA-A8-A07Z 
       43.00        19.99        18.97         8.98        24.99        45.07 
TCGA-A8-A08B TCGA-A8-A08F TCGA-A8-A08G TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08P 
       38.01        33.01        19.96        37.05         9.99        31.00 
TCGA-A8-A08R TCGA-A8-A08X TCGA-A8-A092 TCGA-A8-A097 TCGA-A8-A09A TCGA-A8-A09B 
        0.99        43.00        30.97        12.00         9.99        12.00 
TCGA-A8-A09D TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09Q TCGA-A8-A09X TCGA-AC-A23C 
       50.04        49.05        45.07        25.02        14.01         0.95 
TCGA-AC-A23E TCGA-AC-A2BK TCGA-AC-A2FO TCGA-AC-A62V TCGA-AC-A62X TCGA-AC-A6IW 
        2.37        38.53        50.70        11.44        13.71        13.58 
TCGA-AC-A8OQ TCGA-AN-A04C TCGA-AN-A04D TCGA-AN-A0AL TCGA-AN-A0AR TCGA-AN-A0AS 
        1.12         1.78         1.71         6.51         0.33         0.33 
TCGA-AN-A0AT TCGA-AN-A0FL TCGA-AN-A0FZ TCGA-AN-A0XN TCGA-AN-A0XU TCGA-AO-A03O 
        0.33         7.59         0.33         0.33         0.33        81.63 
TCGA-AO-A03V TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J6 TCGA-AO-A0JL TCGA-AO-A124 
       29.13        32.78        21.40        37.48        55.33       102.58 
TCGA-AO-A128 TCGA-AO-A129 TCGA-AO-A12A TCGA-AO-A12F TCGA-AO-A1KR TCGA-AO-A1KS 
      106.78       108.03        90.58        48.36        70.39         0.53 
TCGA-AQ-A04H TCGA-AQ-A04L TCGA-AQ-A0Y5 TCGA-AQ-A54N TCGA-AQ-A54O TCGA-AQ-A7U7 
       24.79       130.09         5.65         2.56        32.91        19.20 
TCGA-AR-A0TS TCGA-AR-A0TT TCGA-AR-A0TW TCGA-AR-A0U2 TCGA-AR-A0U4 TCGA-AR-A1AI 
       74.79        86.66        98.93        83.87        85.97        61.84 
TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AQ TCGA-AR-A1AR TCGA-AR-A1AW TCGA-AR-A1AY 
       52.77        51.25        43.07        17.23        63.62        33.73 
TCGA-AR-A24H TCGA-AR-A24K TCGA-AR-A24S TCGA-AR-A24U TCGA-AR-A24V TCGA-AR-A251 
      160.90        50.89        97.84        53.36        85.35        78.48 
TCGA-AR-A254 TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LL TCGA-AR-A2LR TCGA-B6-A0IB 
       72.76        58.92        93.83        66.15        20.38       129.57 
TCGA-B6-A0IE TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IN TCGA-B6-A0IO TCGA-B6-A0IQ 
       65.72       112.37       176.98        84.59       110.14       140.88 
TCGA-B6-A0RE TCGA-B6-A0RO TCGA-B6-A0RS TCGA-B6-A0RT TCGA-B6-A0X1 TCGA-B6-A1KC 
      211.56       162.05       100.70        89.46       186.48        43.59 
TCGA-B6-A1KF TCGA-B6-A402 TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0B3 TCGA-BH-A0B6 
      101.52        74.99        20.45        25.55        39.55        56.94 
TCGA-BH-A0BG TCGA-BH-A0BL TCGA-BH-A0BP TCGA-BH-A0BW TCGA-BH-A0C0 TCGA-BH-A0DS 
       24.85        44.05        48.69        11.67        41.75         2.56 
TCGA-BH-A0DT TCGA-BH-A0E0 TCGA-BH-A0E6 TCGA-BH-A0E7 TCGA-BH-A0EA TCGA-BH-A0EE 
       38.47         4.41         9.63        44.81        32.58        31.00 
TCGA-BH-A0GY TCGA-BH-A0H7 TCGA-BH-A0H9 TCGA-BH-A0HU TCGA-BH-A0HY TCGA-BH-A0RX 
       30.35        23.08        41.00        12.89        50.79         5.59 
TCGA-BH-A0WA TCGA-BH-A18L TCGA-BH-A18Q TCGA-BH-A18T TCGA-BH-A18V TCGA-BH-A1EN 
       23.05        26.66        55.63         7.36        51.16        69.93 
TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1F0 TCGA-BH-A1F2 TCGA-BH-A1F6 TCGA-BH-A1FC 
       12.00        55.69        25.81        31.53        97.48       114.15 
TCGA-BH-A1FD TCGA-BH-A209 TCGA-C8-A12L TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12Q 
       33.17       130.16        11.93        12.66        11.77        12.66 
TCGA-C8-A12W TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A1HJ TCGA-C8-A26X TCGA-C8-A26Z 
       12.66         3.16         2.24         0.16         0.36         8.28 
TCGA-C8-A274 TCGA-C8-A27B TCGA-D8-A13Z TCGA-D8-A142 TCGA-D8-A1JB TCGA-D8-A1JD 
        9.53         0.99        20.88        13.97        18.71        18.15 
TCGA-D8-A1JF TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1X5 TCGA-D8-A1X9 TCGA-D8-A1XF 
       12.03        20.12        20.09        18.58        23.90        15.22 
TCGA-D8-A1XK TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1XW TCGA-D8-A1XZ TCGA-D8-A27R 
       14.50         6.35        12.99        12.66        15.32        10.09 
TCGA-D8-A3Z6 TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14R 
       18.51        34.42        27.52        47.15        44.68        38.60 
TCGA-E2-A14V TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A154 TCGA-E2-A158 TCGA-E2-A159 
       34.26        25.41        27.12        19.43        14.79        25.05 
TCGA-E2-A15A TCGA-E2-A15G TCGA-E2-A15M TCGA-E2-A15S TCGA-E2-A1AZ TCGA-E2-A1LH 
       23.34        18.21        11.05        14.07        60.53       106.75 
TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A2P5 TCGA-E2-A573 TCGA-E2-A574 TCGA-E9-A1N9 
      102.61         8.75        16.93        34.92        26.56        13.12 
TCGA-E9-A1NE TCGA-E9-A1RB TCGA-E9-A1RH TCGA-E9-A22B TCGA-E9-A22D TCGA-E9-A22G 
       35.77        32.09        34.59        22.75        41.03        23.51 
TCGA-E9-A244 TCGA-E9-A247 TCGA-E9-A295 TCGA-E9-A3QA TCGA-E9-A5UP TCGA-EW-A1J6 
        0.69        27.22         0.72        30.18        14.40        28.77 
TCGA-EW-A1OV TCGA-EW-A1OW TCGA-EW-A1OY TCGA-EW-A1OZ TCGA-EW-A1P8 TCGA-EW-A1PB 
       25.94        22.82        29.85        40.41         7.86        19.99 
TCGA-EW-A1PC TCGA-EW-A1PH TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A3U0 TCGA-EW-A423 
        6.15        19.96        52.73        25.91        17.49        10.16 
TCGA-GI-A2C9 TCGA-GM-A2DB TCGA-GM-A2DC TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A2DK 
      109.87        79.10        83.34        70.85        72.10        86.96 
TCGA-GM-A3XL TCGA-JL-A3YW TCGA-LD-A7W5 TCGA-LD-A9QF TCGA-LL-A441 TCGA-LL-A5YM 
       69.30        11.84         7.10        10.62        11.44        15.32 
TCGA-LL-A5YO TCGA-LL-A6FQ TCGA-LL-A73Z TCGA-LL-A8F5 TCGA-MS-A51U TCGA-OL-A5D7 
       14.47         2.63         7.46        14.73        22.39        58.52 
TCGA-OL-A5RW TCGA-OL-A5S0 TCGA-OL-A66I TCGA-OL-A6VO TCGA-PL-A8LZ TCGA-S3-A6ZF 
       36.36        20.38        23.47        28.21         9.93        16.50 
TCGA-S3-AA0Z TCGA-S3-AA10 TCGA-S3-AA17 TCGA-UL-AAZ6 TCGA-UU-A93S TCGA-Z7-A8R6 
       16.80        15.39        13.94        17.03         3.81       107.05 

$`AMP PEAK 13(10P15.1) WILD-TYPE`
TCGA-3C-AAAU TCGA-3C-AALI TCGA-3C-AALJ TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT0 
      129.14       131.67        42.81        40.14        11.44        48.56 
TCGA-5L-AAT1 TCGA-A1-A0SB TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI TCGA-A1-A0SK 
       48.36         8.52        14.27        47.24        20.88        31.79 
TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SP TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04R 
        7.96        39.32        19.20        18.21       104.81       121.94 
TCGA-A2-A04V TCGA-A2-A04W TCGA-A2-A04X TCGA-A2-A04Y TCGA-A2-A0CK TCGA-A2-A0CL 
       63.12       101.98        55.43        36.13       136.73        99.12 
TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CQ TCGA-A2-A0CR TCGA-A2-A0CS TCGA-A2-A0CT 
      114.81        92.48        88.60       107.93        75.55        75.25 
TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0CX TCGA-A2-A0D1 TCGA-A2-A0D3 
        5.19        98.99       107.93        56.81        34.55        61.58 
TCGA-A2-A0D4 TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0ER 
       25.22       101.72       134.40        80.28       107.61        74.40 
TCGA-A2-A0ES TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0EY 
       72.00        35.05        34.29        61.94        24.72        63.29 
TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SY TCGA-A2-A0T4 TCGA-A2-A0T5 TCGA-A2-A0T6 
       54.64        27.12        44.28        20.52        17.46        18.90 
TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YF TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YK 
       32.55        25.28        50.47        21.67        49.48        19.33 
TCGA-A2-A0YL TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1FX TCGA-A2-A1FZ 
       48.46        23.77        23.47        17.36        60.72        22.45 
TCGA-A2-A1G0 TCGA-A2-A1G4 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25A TCGA-A2-A25C 
       20.25        19.56        16.47        52.47       107.70        17.19 
TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD TCGA-A2-A3XU 
       18.15       105.34        10.59        20.88        39.65        29.98 
TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A4RX TCGA-A2-A4RY 
       32.75        49.48        34.98        50.37        24.39        21.30 
TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CD TCGA-A7-A0CE 
       23.21        26.96        21.14        21.90        38.30        35.31 
TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0CJ TCGA-A7-A0D9 TCGA-A7-A0DB TCGA-A7-A0DC 
       34.29        35.47        30.61        37.45        33.11        29.79 
TCGA-A7-A13F TCGA-A7-A13G TCGA-A7-A13H TCGA-A7-A26E TCGA-A7-A26H TCGA-A7-A26J 
       25.15        23.61        29.56        31.36        23.80        20.61 
TCGA-A7-A2KD TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3J1 TCGA-A7-A3RF 
       22.32        11.34        10.59        10.29        11.28        13.41 
TCGA-A7-A425 TCGA-A7-A426 TCGA-A7-A4SB TCGA-A7-A4SE TCGA-A7-A5ZW TCGA-A7-A5ZX 
       14.70        11.97        13.74        21.17        10.72        11.05 
TCGA-A8-A06P TCGA-A8-A06T TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A076 
       13.02        53.06        26.01         1.02        17.03        53.98 
TCGA-A8-A079 TCGA-A8-A07F TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07L TCGA-A8-A07O 
        9.01        18.97        14.01        12.00        32.05         9.99 
TCGA-A8-A07P TCGA-A8-A07S TCGA-A8-A07W TCGA-A8-A082 TCGA-A8-A084 TCGA-A8-A085 
       10.98         7.99         9.99        18.05        15.06        36.95 
TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08C TCGA-A8-A08I TCGA-A8-A08O TCGA-A8-A08S 
       13.02         0.99        28.96        12.00        31.00        33.01 
TCGA-A8-A08T TCGA-A8-A08Z TCGA-A8-A091 TCGA-A8-A093 TCGA-A8-A095 TCGA-A8-A099 
      112.08        40.01        33.01        17.95        41.98         9.99 
TCGA-A8-A09C TCGA-A8-A09K TCGA-A8-A09M TCGA-A8-A09N TCGA-A8-A09R TCGA-A8-A09T 
        1.02        29.98        33.07         1.02         8.98        19.04 
TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A6 
       15.02         0.99        12.00        19.04        13.02        21.04 
TCGA-A8-A0A7 TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23G TCGA-AC-A23H 
        0.99        27.02        17.03        38.04        10.85         5.72 
TCGA-AC-A2B8 TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK 
        1.48        99.35        40.57        55.43        36.99        38.79 
TCGA-AC-A2FM TCGA-AC-A2QH TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3HN 
       26.04        33.04         0.92         2.27        32.45        16.31 
TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3TN TCGA-AC-A3W5 TCGA-AC-A3W6 TCGA-AC-A3YI 
       14.83        22.19        14.99        16.57        19.79        23.24 
TCGA-AC-A3YJ TCGA-AC-A5XS TCGA-AC-A62Y TCGA-AC-A6IV TCGA-AC-A6IX TCGA-AC-A6NO 
       24.79         1.55        17.42        18.67        12.26         1.68 
TCGA-AC-A7VB TCGA-AC-A7VC TCGA-AC-A8OP TCGA-AC-A8OR TCGA-AC-A8OS TCGA-AN-A03X 
        8.22         0.03        20.19         1.32         2.30         0.33 
TCGA-AN-A03Y TCGA-AN-A041 TCGA-AN-A046 TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A0AJ 
        0.33         0.23         0.33         0.62         2.96         9.96 
TCGA-AN-A0AK TCGA-AN-A0AM TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FK 
        7.36         0.16         6.44         5.65         7.96         7.00 
TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FX 
        7.17         6.28         7.04         0.33         0.36         0.33 
TCGA-AN-A0FY TCGA-AN-A0XL TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS 
        0.33         0.33        12.33         0.30         0.33         0.33 
TCGA-AN-A0XT TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03L TCGA-AO-A03M TCGA-AO-A03N 
        0.33         5.33         5.59        80.28        61.35        66.77 
TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A0J4 TCGA-AO-A0J5 
       95.70        68.75        47.87        58.95        52.18        26.04 
TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JC 
       20.32        22.36        53.03        21.53        50.70        50.86 
TCGA-AO-A0JD TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JG TCGA-AO-A0JI TCGA-AO-A0JJ 
       72.00        76.77        21.37        26.24        50.24        62.04 
TCGA-AO-A0JM TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A12E 
       71.80        99.25       108.72        98.27        64.04        57.30 
TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KQ TCGA-AO-A1KT 
       41.62        28.37        14.73        82.62        61.87        17.79 
TCGA-AQ-A04J TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AR-A0TP TCGA-AR-A0TQ TCGA-AR-A0TR 
       26.93        15.62        32.52       111.32        73.64         5.26 
TCGA-AR-A0TV TCGA-AR-A0TX TCGA-AR-A0TY TCGA-AR-A0TZ TCGA-AR-A0U0 TCGA-AR-A0U1 
       42.35        64.83        55.86       107.24        65.36       101.95 
TCGA-AR-A0U3 TCGA-AR-A1AH TCGA-AR-A1AL TCGA-AR-A1AM TCGA-AR-A1AN TCGA-AR-A1AO 
      114.02        75.55        48.82        76.11        43.73        43.56 
TCGA-AR-A1AP TCGA-AR-A1AS TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A1AX TCGA-AR-A24L 
       39.98        37.81        76.21        61.28        62.14        94.22 
TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24Q TCGA-AR-A24R 
       96.89        78.51        84.20         2.76       104.28        87.22 
TCGA-AR-A24T TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A252 
       76.01        50.96        83.77        79.00        89.00        73.18 
TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LM TCGA-AR-A2LN 
      143.21        20.25        62.86        54.21        52.11        38.17 
TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A5QM TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ 
       39.39        40.54        54.74        16.04        20.45        10.59 
TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0I9 TCGA-B6-A0IA TCGA-B6-A0IC 
       77.62       143.38       149.59        12.13       220.90        50.70 
TCGA-B6-A0IG TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IP TCGA-B6-A0RG TCGA-B6-A0RH 
      146.50        18.77       126.12       110.93        68.45       189.01 
TCGA-B6-A0RI TCGA-B6-A0RL TCGA-B6-A0RM TCGA-B6-A0RN TCGA-B6-A0RP TCGA-B6-A0RQ 
      234.28        81.17        78.02       172.96       102.77       140.48 
TCGA-B6-A0RU TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0WW 
      131.21       157.41        97.48       188.68        79.63        18.35 
TCGA-B6-A0WX TCGA-B6-A0WY TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X4 TCGA-B6-A0X5 
       21.47       113.79       129.57       129.70        28.27        68.94 
TCGA-B6-A0X7 TCGA-B6-A1KI TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A401 TCGA-B6-A408 
       58.88        73.51       139.17       170.17        85.35        68.12 
TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AU TCGA-BH-A0AV TCGA-BH-A0AZ TCGA-BH-A0B0 
      103.63        71.15        24.53        59.84        28.50        46.95 
TCGA-BH-A0B2 TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0B7 TCGA-BH-A0B9 TCGA-BH-A0BA 
       40.83        39.16        48.36        56.98        51.68        37.22 
TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BF TCGA-BH-A0BJ TCGA-BH-A0BM TCGA-BH-A0BO 
       32.02        18.21        25.71        21.70        61.68        35.67 
TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0BZ 
       27.19        53.69        53.95        45.57        49.94        49.05 
TCGA-BH-A0C1 TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DG 
       44.02        48.13        42.90        45.83        31.17        23.44 
TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DO TCGA-BH-A0DP 
       38.01        22.13        13.91        48.23        17.26        15.65 
TCGA-BH-A0DQ TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E1 TCGA-BH-A0E2 
        3.22        67.86        47.41        16.27        15.68        14.30 
TCGA-BH-A0E9 TCGA-BH-A0EB TCGA-BH-A0EI TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 
       46.19        24.49        24.43        10.78        15.16        37.78 
TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HI TCGA-BH-A0HK 
       35.51        24.56        52.96        26.50        20.38         5.85 
TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0W3 
        2.50        13.61        36.85        51.32        27.25        23.93 
TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18I 
       24.95        42.35        44.81         8.81         2.01         7.23 
TCGA-BH-A18J TCGA-BH-A18K TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18R 
       20.12        90.84        72.56        37.74        30.28        37.55 
TCGA-BH-A18S TCGA-BH-A18U TCGA-BH-A1EO TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EU 
       66.05        51.39        91.99       113.82        82.85        42.28 
TCGA-BH-A1EX TCGA-BH-A1EY TCGA-BH-A1F5 TCGA-BH-A1F8 TCGA-BH-A1FB TCGA-BH-A1FE 
       49.58        17.69        89.16        24.66       120.62        74.73 
TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FM TCGA-BH-A1FN 
      122.89        36.92        63.35        55.00        45.63        72.07 
TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A203 TCGA-BH-A204 
      144.59        72.07        28.14        26.14        38.60        83.31 
TCGA-BH-A208 TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U 
       57.83        10.65         6.44        20.12        10.52       109.28 
TCGA-BH-A42V TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-BH-A6R8 TCGA-BH-A6R9 TCGA-BH-A8FY 
        8.94        18.64        23.51         9.63         5.26         9.70 
TCGA-BH-A8FZ TCGA-BH-A8G0 TCGA-BH-AB28 TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12U 
       18.87        21.76         9.44        11.77        11.77        12.66 
TCGA-C8-A12V TCGA-C8-A12X TCGA-C8-A12Z TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A135 
       12.66        12.66         0.39         1.87         1.12         1.05 
TCGA-C8-A137 TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HI 
        4.11         4.08        12.33        10.92        11.34        11.28 
TCGA-C8-A1HK TCGA-C8-A1HL TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A26V TCGA-C8-A26W 
       12.03        10.42         2.30         3.25         0.30         0.23 
TCGA-C8-A26Y TCGA-C8-A273 TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A3M7 
        0.43         9.67         0.03         9.50        12.20         0.03 
TCGA-C8-A3M8 TCGA-C8-A8HP TCGA-C8-A8HQ TCGA-C8-A8HR TCGA-C8-A9FZ TCGA-D8-A13Y 
        0.23        13.02        12.49        13.41        19.46        11.90 
TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A143 TCGA-D8-A145 TCGA-D8-A146 TCGA-D8-A147 
       13.25        20.58        14.17        13.48        21.14        19.20 
TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JC TCGA-D8-A1JE TCGA-D8-A1JG 
       14.17        17.49        16.50        15.78        18.90        12.03 
TCGA-D8-A1JH TCGA-D8-A1JI TCGA-D8-A1JJ TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1JP 
       14.01        18.97        20.09        19.40        20.38        21.01 
TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X6 TCGA-D8-A1X7 TCGA-D8-A1X8 
       12.20        13.32        14.70        17.79        16.73        25.74 
TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XD TCGA-D8-A1XG TCGA-D8-A1XJ 
       27.58        18.15        12.39        17.16        14.73        21.83 
TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XQ TCGA-D8-A1XR TCGA-D8-A1XS 
       19.92        17.69        15.55        16.41        15.85        16.31 
TCGA-D8-A1XV TCGA-D8-A1XY TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 TCGA-D8-A1Y3 
       15.16        16.54        15.52         9.93        14.24        14.14 
TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27I TCGA-D8-A27K 
       17.42        16.04        13.45        13.05        14.43         9.44 
TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27T TCGA-D8-A27V 
       16.41        13.48         4.80         0.76        13.08        12.53 
TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A4Z1 TCGA-D8-A73U TCGA-D8-A73W TCGA-D8-A73X 
       12.26        33.37        21.67        16.18         8.02        12.10 
TCGA-E2-A105 TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10C TCGA-E2-A10E 
       43.00        46.59        40.41        37.51        40.11        28.44 
TCGA-E2-A10F TCGA-E2-A14P TCGA-E2-A14Q TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U 
       28.87        40.96        38.24        33.17        33.30        43.33 
TCGA-E2-A14W TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A153 TCGA-E2-A155 
       32.02        31.96        28.60        18.51        23.24        21.04 
TCGA-E2-A156 TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15H 
       23.87        22.82        17.29        20.71        21.63        12.92 
TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15O TCGA-E2-A15P 
       17.42        19.40         9.04        20.58        13.02        19.56 
TCGA-E2-A15R TCGA-E2-A15T TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 
       17.06        14.99        53.62        53.03        33.01        32.35 
TCGA-E2-A1B6 TCGA-E2-A1BC TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IG 
       28.50        16.47        17.10        38.30        37.41        32.78 
TCGA-E2-A1IH TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN 
       33.73        33.70        28.44        22.65         3.88        22.19 
TCGA-E2-A1IO TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L8 TCGA-E2-A1L9 
       20.98        11.08        54.18        27.42        39.62        19.66 
TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LG TCGA-E2-A1LL TCGA-E2-A2P6 
       24.59        40.47        28.90        18.87        43.04         5.52 
TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A576 TCGA-E2-A9RU TCGA-E9-A1N3 
       15.72         8.28        30.61        34.29        12.85        34.82 
TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N6 TCGA-E9-A1N8 TCGA-E9-A1NA TCGA-E9-A1NC 
       32.88        36.82        13.48        12.00        36.56        39.55 
TCGA-E9-A1ND TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R0 
       12.59        35.24        25.84         9.86        11.90        28.27 
TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1R7 
       34.95         2.56         6.12         3.02         2.76        21.21 
TCGA-E9-A1RA TCGA-E9-A1RC TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RG 
       32.09        40.24         1.12        34.65         6.58        21.27 
TCGA-E9-A1RI TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A 
       35.64        34.13        32.05        12.53        13.32        39.09 
TCGA-E9-A22E TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A 
       12.89        20.71        17.06         1.94         7.13        24.56 
TCGA-E9-A2JS TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3X8 TCGA-E9-A54X 
       29.72         0.76        26.07        18.41        15.72        12.33 
TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UO TCGA-E9-A6HE TCGA-EW-A1IW 
       23.84        14.70         0.79        13.81        15.39        12.20 
TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1J3 
       39.72         8.48        18.21        18.90        13.25        16.57 
TCGA-EW-A1J5 TCGA-EW-A1OX TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P3 TCGA-EW-A1P4 
       15.68        29.95        41.13        39.78        52.96        29.82 
TCGA-EW-A1P5 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1PA TCGA-EW-A1PD TCGA-EW-A1PE 
       23.11        18.48        30.08        18.90        13.94        10.52 
TCGA-EW-A1PF TCGA-EW-A1PG TCGA-EW-A2FR TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A424 
       14.43        34.55        55.00        22.09        34.03        23.51 
TCGA-GI-A2C8 TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DD TCGA-GM-A2DI TCGA-GM-A2DL 
        7.40        59.57       216.76        75.02        85.15       115.69 
TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A2DO TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG 
      106.06       101.62        85.35       110.50        38.20        43.73 
TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2NL TCGA-HN-A2OB 
       66.38        72.03        13.55        18.12         2.60        62.43 
TCGA-JL-A3YX TCGA-LD-A66U TCGA-LD-A74U TCGA-LD-A7W6 TCGA-LL-A440 TCGA-LL-A442 
       11.57        21.24        13.22        13.28        24.95        10.95 
TCGA-LL-A50Y TCGA-LL-A5YL TCGA-LL-A5YN TCGA-LL-A5YP TCGA-LL-A6FP TCGA-LL-A6FR 
       25.05        17.06        14.70        14.79        22.26        16.08 
TCGA-LL-A73Y TCGA-LL-A740 TCGA-LL-A7SZ TCGA-LL-A7T0 TCGA-LL-A9Q3 TCGA-LQ-A4E4 
       15.68        14.50        14.70        12.36        14.07        27.91 
TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RU TCGA-OL-A5RV 
        2.10        36.30        31.99        58.62        40.08        34.92 
TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A66H TCGA-OL-A66J TCGA-OL-A66K 
       28.87        24.72        22.32        26.70        65.62        41.92 
TCGA-OL-A66L TCGA-OL-A66N TCGA-OL-A66O TCGA-OL-A66P TCGA-OL-A6VQ TCGA-OL-A6VR 
       42.77        26.04        17.36        14.07        19.73        40.11 
TCGA-OL-A97C TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE TCGA-PL-A8LX TCGA-PL-A8LY 
        8.91        47.01        64.21        86.96         0.16         0.26 
TCGA-S3-A6ZG TCGA-S3-A6ZH TCGA-S3-AA11 TCGA-S3-AA12 TCGA-S3-AA14 TCGA-S3-AA15 
       13.12        16.93        13.84        15.35        14.96        13.84 
TCGA-W8-A86G TCGA-WT-AB41 TCGA-WT-AB44 TCGA-XX-A899 TCGA-XX-A89A TCGA-Z7-A8R5 
       11.41        52.96        29.03        15.35        16.04       108.07 

  AMP PEAK 13(10P15.1) MUTATED AMP PEAK 13(10P15.1) WILD-TYPE 
                          0.16                           0.03 
  AMP PEAK 13(10P15.1) MUTATED AMP PEAK 13(10P15.1) WILD-TYPE 
                        211.56                         234.28 
  AMP PEAK 13(10P15.1) MUTATED AMP PEAK 13(10P15.1) WILD-TYPE 
                        25.035                         23.900 
[1] "0.2 - 211.6 (25.0)" "0.0 - 234.3 (23.9)"
[1] "hr=" "1.3"
D13V2, continuous
                                vv
clus                             STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  AMP PEAK 13(10P15.1) MUTATED        26       16        1        0       115
  AMP PEAK 13(10P15.1) WILD-TYPE      63       65        7        3       238
                                vv
clus                             STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  AMP PEAK 13(10P15.1) MUTATED          57         0         41         10
  AMP PEAK 13(10P15.1) WILD-TYPE       188         2        109         19
                                vv
clus                             STAGE IIIC STAGE IV STAGE TIS STAGE X
  AMP PEAK 13(10P15.1) MUTATED           18        8         1       4
  AMP PEAK 13(10P15.1) WILD-TYPE         45       12         0       9
D13V3, multiclass
            clus
vv           AMP PEAK 13(10P15.1) MUTATED AMP PEAK 13(10P15.1) WILD-TYPE
  STAGE I                              26                             63
  STAGE IA                             16                             65
  STAGE IB                              1                              7
  STAGE II                              0                              3
  STAGE IIA                           115                            238
  STAGE IIB                            57                            188
  STAGE III                             0                              2
  STAGE IIIA                           41                            109
  STAGE IIIB                           10                             19
  STAGE IIIC                           18                             45
  STAGE IV                              8                             12
  STAGE TIS                             1                              0
  STAGE X                               4                              9
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              T1  T2  T3  T4
  AMP PEAK 13(10P15.1) MUTATED    68 183  30  16
  AMP PEAK 13(10P15.1) WILD-TYPE 204 433 100  24
D13V4, multiclass
    clus
vv   AMP PEAK 13(10P15.1) MUTATED AMP PEAK 13(10P15.1) WILD-TYPE
  T1                           68                            204
  T2                          183                            433
  T3                           30                            100
  T4                           16                             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              N0  N1  N2  N3
  AMP PEAK 13(10P15.1) MUTATED   146  88  36  23
  AMP PEAK 13(10P15.1) WILD-TYPE 355 262  81  52
D13V5, multiclass
    clus
vv   AMP PEAK 13(10P15.1) MUTATED AMP PEAK 13(10P15.1) WILD-TYPE
  N0                          146                            355
  N1                           88                            262
  N2                           36                             81
  N3                           23                             52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D13V6, binary
                                cls
clus                               0   1
  AMP PEAK 13(10P15.1) MUTATED   253   8
  AMP PEAK 13(10P15.1) WILD-TYPE 626  13
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 13(10P15.1) MUTATED    253    8
  AMP PEAK 13(10P15.1) WILD-TYPE  626   13
   clus
vv  AMP PEAK 13(10P15.1) MUTATED AMP PEAK 13(10P15.1) WILD-TYPE
  0                          253                            626
  1                            8                             13
[1] 2 2
[1] FALSE
D13V7, binary
                                cls
clus                               0   1
  AMP PEAK 13(10P15.1) MUTATED   297   2
  AMP PEAK 13(10P15.1) WILD-TYPE 754   9
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 13(10P15.1) MUTATED    297    2
  AMP PEAK 13(10P15.1) WILD-TYPE  754    9
        clus
vv       AMP PEAK 13(10P15.1) MUTATED AMP PEAK 13(10P15.1) WILD-TYPE
  FEMALE                          297                            754
  MALE                              2                              9
[1] 2 2
[1] FALSE
                                vv
clus                             INFILTRATING CARCINOMA NOS
  AMP PEAK 13(10P15.1) MUTATED                            1
  AMP PEAK 13(10P15.1) WILD-TYPE                          0
                                vv
clus                             INFILTRATING DUCTAL CARCINOMA
  AMP PEAK 13(10P15.1) MUTATED                             258
  AMP PEAK 13(10P15.1) WILD-TYPE                           505
                                vv
clus                             INFILTRATING LOBULAR CARCINOMA
  AMP PEAK 13(10P15.1) MUTATED                               19
  AMP PEAK 13(10P15.1) WILD-TYPE                            173
                                vv
clus                             MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  AMP PEAK 13(10P15.1) MUTATED                     5                     0
  AMP PEAK 13(10P15.1) WILD-TYPE                   1                     4
                                vv
clus                             MIXED HISTOLOGY (PLEASE SPECIFY)
  AMP PEAK 13(10P15.1) MUTATED                                  5
  AMP PEAK 13(10P15.1) WILD-TYPE                               25
                                vv
clus                             MUCINOUS CARCINOMA OTHER  SPECIFY
  AMP PEAK 13(10P15.1) MUTATED                    0             10
  AMP PEAK 13(10P15.1) WILD-TYPE                 17             38
D13V8, multiclass
                                  clus
vv                                 AMP PEAK 13(10P15.1) MUTATED
  INFILTRATING CARCINOMA NOS                                  1
  INFILTRATING DUCTAL CARCINOMA                             258
  INFILTRATING LOBULAR CARCINOMA                             19
  MEDULLARY CARCINOMA                                         5
  METAPLASTIC CARCINOMA                                       0
  MIXED HISTOLOGY (PLEASE SPECIFY)                            5
  MUCINOUS CARCINOMA                                          0
  OTHER  SPECIFY                                             10
                                  clus
vv                                 AMP PEAK 13(10P15.1) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                    0
  INFILTRATING DUCTAL CARCINOMA                               505
  INFILTRATING LOBULAR CARCINOMA                              173
  MEDULLARY CARCINOMA                                           1
  METAPLASTIC CARCINOMA                                         4
  MIXED HISTOLOGY (PLEASE SPECIFY)                             25
  MUCINOUS CARCINOMA                                           17
  OTHER  SPECIFY                                               38
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D13V9, binary
                                cls
clus                               0   1
  AMP PEAK 13(10P15.1) MUTATED    90 209
  AMP PEAK 13(10P15.1) WILD-TYPE 198 565
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 13(10P15.1) MUTATED     90  209
  AMP PEAK 13(10P15.1) WILD-TYPE  198  565
     clus
vv    AMP PEAK 13(10P15.1) MUTATED AMP PEAK 13(10P15.1) WILD-TYPE
  NO                            90                            198
  YES                          209                            565
[1] 2 2
[1] FALSE
D13V10, continuous
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK 13(10P15.1) MUTATED                                  1    14
  AMP PEAK 13(10P15.1) WILD-TYPE                                0    46
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 13(10P15.1) MUTATED                          71   184
  AMP PEAK 13(10P15.1) WILD-TYPE                        99   552
D13V11, multiclass
                                  clus
vv                                 AMP PEAK 13(10P15.1) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            1
  ASIAN                                                      14
  BLACK OR AFRICAN AMERICAN                                  71
  WHITE                                                     184
                                  clus
vv                                 AMP PEAK 13(10P15.1) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              0
  ASIAN                                                        46
  BLACK OR AFRICAN AMERICAN                                    99
  WHITE                                                       552
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D13V12, binary
                                cls
clus                               0   1
  AMP PEAK 13(10P15.1) MUTATED     8 236
  AMP PEAK 13(10P15.1) WILD-TYPE  30 622
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 13(10P15.1) MUTATED      8  236
  AMP PEAK 13(10P15.1) WILD-TYPE   30  622
                        clus
vv                       AMP PEAK 13(10P15.1) MUTATED
  HISPANIC OR LATINO                                8
  NOT HISPANIC OR LATINO                          236
                        clus
vv                       AMP PEAK 13(10P15.1) WILD-TYPE
  HISPANIC OR LATINO                                 30
  NOT HISPANIC OR LATINO                            622
[1] 2 2
[1] FALSE

Clustering(14) Variable = AMP PEAK 14(10Q22.3) MUTATION ANALYSIS
D14V1, survival
                                sevent
clus2                              0   1
  AMP PEAK 14(10Q22.3) MUTATED   122  25
  AMP PEAK 14(10Q22.3) WILD-TYPE 794 103
  AMP PEAK 14(10Q22.3) MUTATED AMP PEAK 14(10Q22.3) WILD-TYPE 
                           147                            897 
  AMP PEAK 14(10Q22.3) MUTATED AMP PEAK 14(10Q22.3) WILD-TYPE 
                            25                            103 
$`AMP PEAK 14(10Q22.3) MUTATED`
TCGA-5T-A9QA TCGA-A1-A0SD TCGA-A1-A0SF TCGA-A2-A04Q TCGA-A2-A04W TCGA-A2-A0CL 
        9.96        14.37        48.10        78.41       101.98        99.12 
TCGA-A2-A0CM TCGA-A2-A0EQ TCGA-A2-A0SX TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T7 
       24.79        79.76        50.43        17.13         8.38        20.75 
TCGA-A2-A0YJ TCGA-A2-A1FW TCGA-A2-A25E TCGA-A7-A0CJ TCGA-A7-A26G TCGA-A7-A26I 
       18.61        17.36       105.34        30.61        23.74        21.73 
TCGA-A7-A4SB TCGA-A8-A06O TCGA-A8-A06R TCGA-A8-A06X TCGA-A8-A075 TCGA-A8-A07E 
       13.74        13.02        17.98        31.00        17.03        19.99 
TCGA-A8-A07L TCGA-A8-A07Z TCGA-A8-A08B TCGA-A8-A08P TCGA-A8-A092 TCGA-A8-A09Q 
       32.05        45.07        38.01        31.00        30.97        25.02 
TCGA-A8-A09X TCGA-AC-A23E TCGA-AC-A62V TCGA-AC-A62X TCGA-AC-A8OP TCGA-AN-A04C 
       14.01         2.37        11.44        13.71        20.19         1.78 
TCGA-AN-A0AJ TCGA-AN-A0AM TCGA-AN-A0AS TCGA-AN-A0FV TCGA-AN-A0XN TCGA-AO-A03N 
        9.96         0.16         0.33         0.33         0.33        66.77 
TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03V TCGA-AO-A0J9 TCGA-AO-A0JL TCGA-AO-A124 
       81.63        95.70        29.13        53.03        55.33       102.58 
TCGA-AO-A128 TCGA-AO-A12A TCGA-AO-A12D TCGA-AO-A1KQ TCGA-AO-A1KR TCGA-AO-A1KS 
      106.78        90.58        64.04        61.87        70.39         0.53 
TCGA-AQ-A04L TCGA-AQ-A54N TCGA-AR-A0TT TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AQ 
      130.09         2.56        86.66        61.84        52.77        43.07 
TCGA-AR-A1AW TCGA-AR-A24K TCGA-AR-A24S TCGA-AR-A24U TCGA-AR-A24V TCGA-AR-A254 
       63.62        50.89        97.84        53.36        85.35        72.76 
TCGA-AR-A2LL TCGA-B6-A0I1 TCGA-B6-A0IE TCGA-B6-A0IO TCGA-B6-A0RL TCGA-B6-A0RO 
       66.15        77.62        65.72       110.14        81.17       162.05 
TCGA-B6-A0RS TCGA-B6-A0WV TCGA-B6-A1KC TCGA-B6-A40B TCGA-BH-A0AU TCGA-BH-A0AY 
      100.70        79.63        43.59       103.63        24.53        25.55 
TCGA-BH-A0B6 TCGA-BH-A0B9 TCGA-BH-A0BL TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0E6 
       56.94        51.68        44.05         2.56        38.47         9.63 
TCGA-BH-A0E7 TCGA-BH-A0EA TCGA-BH-A0EE TCGA-BH-A0HP TCGA-BH-A18L TCGA-BH-A18R 
       44.81        32.58        31.00        13.61        26.66        37.55 
TCGA-BH-A18T TCGA-BH-A1EN TCGA-BH-A1EO TCGA-BH-A1EV TCGA-BH-A1EY TCGA-BH-A1F2 
        7.36        69.93        91.99        12.00        17.69        31.53 
TCGA-BH-A1FN TCGA-C8-A12O TCGA-C8-A130 TCGA-C8-A132 TCGA-C8-A138 TCGA-C8-A1HK 
       72.07        12.66         3.16         1.87         4.08        12.03 
TCGA-C8-A1HM TCGA-C8-A26W TCGA-C8-A274 TCGA-C8-A8HP TCGA-D8-A13Z TCGA-D8-A147 
        2.30         0.23         9.53        13.02        20.88        19.20 
TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JF TCGA-D8-A1XL TCGA-E2-A107 TCGA-E2-A10C 
       18.15        18.90        12.03        19.92        34.42        40.11 
TCGA-E2-A14O TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A154 TCGA-E2-A15G TCGA-E2-A15S 
       44.68        18.51        25.41        19.43        18.21        14.07 
TCGA-E2-A1AZ TCGA-E2-A1LI TCGA-E2-A2P5 TCGA-E9-A1N6 TCGA-E9-A1N9 TCGA-E9-A1R4 
       60.53       102.61        16.93        13.48        13.12         6.12 
TCGA-E9-A1RH TCGA-E9-A22B TCGA-E9-A244 TCGA-E9-A247 TCGA-E9-A5UP TCGA-EW-A1OV 
       34.59        22.75         0.69        27.22        14.40        25.94 
TCGA-EW-A1OZ TCGA-EW-A1P4 TCGA-EW-A1P8 TCGA-EW-A423 TCGA-GM-A2DB TCGA-GM-A2DH 
       40.41        29.82         7.86        10.16        79.10        72.10 
TCGA-GM-A3XL TCGA-LD-A7W5 TCGA-LD-A9QF TCGA-LL-A5YO TCGA-LL-A6FQ TCGA-LL-A73Z 
       69.30         7.10        10.62        14.47         2.63         7.46 
TCGA-MS-A51U TCGA-OL-A5S0 TCGA-S3-AA10 
       22.39        20.38        15.39 

$`AMP PEAK 14(10Q22.3) WILD-TYPE`
TCGA-3C-AAAU TCGA-3C-AALI TCGA-3C-AALJ TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT0 
      129.14       131.67        42.81        40.14        11.44        48.56 
TCGA-5L-AAT1 TCGA-A1-A0SB TCGA-A1-A0SE TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI 
       48.36         8.52        43.43        14.27        47.24        20.88 
TCGA-A1-A0SJ TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SO TCGA-A1-A0SP 
       13.68        31.79         7.96        39.32        28.01        19.20 
TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04P TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04U 
       18.21       104.81        18.02       121.94        73.84        87.25 
TCGA-A2-A04V TCGA-A2-A04X TCGA-A2-A04Y TCGA-A2-A0CK TCGA-A2-A0CO TCGA-A2-A0CP 
       63.12        55.43        36.13       136.73       114.81        92.48 
TCGA-A2-A0CQ TCGA-A2-A0CR TCGA-A2-A0CS TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV 
       88.60       107.93        75.55        75.25         5.19        98.99 
TCGA-A2-A0CW TCGA-A2-A0CX TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 
      107.93        56.81        67.33        34.55        33.76        61.58 
TCGA-A2-A0D4 TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0ER 
       25.22       101.72       134.40        80.28       107.61        74.40 
TCGA-A2-A0ES TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX 
       72.00        35.05        34.29        31.82        61.94        24.72 
TCGA-A2-A0EY TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0SY 
       63.29        99.19        54.64        27.12        44.88        44.28 
TCGA-A2-A0T0 TCGA-A2-A0T3 TCGA-A2-A0T4 TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0YC 
       17.52        49.84        20.52        17.46        18.90        32.55 
TCGA-A2-A0YD TCGA-A2-A0YE TCGA-A2-A0YF TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A0YI 
       25.28        18.21        50.47        21.90        21.67        49.48 
TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A0YM TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FX 
       19.33        48.46        31.73        23.77        23.47        60.72 
TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G1 TCGA-A2-A1G4 TCGA-A2-A1G6 TCGA-A2-A259 
       22.45        20.25        19.20        19.56        16.47        52.47 
TCGA-A2-A25A TCGA-A2-A25B TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25F TCGA-A2-A3KC 
      107.70        42.44        17.19        18.15        10.59        20.88 
TCGA-A2-A3KD TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW 
       39.65        33.93        83.01        29.98        32.75        49.48 
TCGA-A2-A3XX TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4RX 
       47.31        34.98        50.37        38.37         7.30        24.39 
TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CD 
       21.30        23.21        26.96        21.14        21.90        38.30 
TCGA-A7-A0CE TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DB 
       35.31        34.29        35.47        37.45        35.67        33.11 
TCGA-A7-A0DC TCGA-A7-A13D TCGA-A7-A13E TCGA-A7-A13F TCGA-A7-A13G TCGA-A7-A13H 
       29.79        31.73        20.19        25.15        23.61        29.56 
TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26H TCGA-A7-A26J TCGA-A7-A2KD TCGA-A7-A3IY 
       31.36        24.26        23.80        20.61        22.32        11.34 
TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3J1 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A426 
       10.59        10.29        11.28        13.41        14.70        11.97 
TCGA-A7-A4SA TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF TCGA-A7-A56D TCGA-A7-A5ZV 
       14.93        14.50        21.17        17.92        14.73        12.10 
TCGA-A7-A5ZW TCGA-A7-A5ZX TCGA-A7-A6VV TCGA-A7-A6VW TCGA-A7-A6VX TCGA-A7-A6VY 
       10.72        11.05        10.29         9.37        10.42         8.75 
TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06T TCGA-A8-A06U TCGA-A8-A06Y TCGA-A8-A06Z 
       13.02         1.02        53.06        29.03        26.01         1.02 
TCGA-A8-A076 TCGA-A8-A079 TCGA-A8-A07B TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I 
       53.98         9.01        43.00        18.97        18.97        14.01 
TCGA-A8-A07J TCGA-A8-A07O TCGA-A8-A07P TCGA-A8-A07R TCGA-A8-A07S TCGA-A8-A07U 
       12.00         9.99        10.98         8.98         7.99        24.99 
TCGA-A8-A07W TCGA-A8-A082 TCGA-A8-A084 TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A 
        9.99        18.05        15.06        36.95        13.02         0.99 
TCGA-A8-A08C TCGA-A8-A08F TCGA-A8-A08G TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L 
       28.96        33.01        19.96        12.00        37.05         9.99 
TCGA-A8-A08O TCGA-A8-A08R TCGA-A8-A08S TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A08Z 
       31.00         0.99        33.01       112.08        43.00        40.01 
TCGA-A8-A091 TCGA-A8-A093 TCGA-A8-A095 TCGA-A8-A097 TCGA-A8-A099 TCGA-A8-A09A 
       33.01        17.95        41.98        12.00         9.99         9.99 
TCGA-A8-A09B TCGA-A8-A09C TCGA-A8-A09D TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K 
       12.00         1.02        50.04        49.05        45.07        29.98 
TCGA-A8-A09M TCGA-A8-A09N TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09W 
       33.07         1.02         8.98        19.04        15.02         0.99 
TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A7 TCGA-A8-A0A9 
       12.00        19.04        13.02        21.04         0.99        27.02 
TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23G TCGA-AC-A23H TCGA-AC-A2B8 
       17.03        38.04         0.95        10.85         5.72         1.48 
TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK 
       38.53        99.35        40.57        55.43        36.99        38.79 
TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A2QH TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3BB 
       26.04        50.70        33.04         0.92         2.27        32.45 
TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3TN TCGA-AC-A3W5 TCGA-AC-A3W6 
       16.31        14.83        22.19        14.99        16.57        19.79 
TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A5XS TCGA-AC-A62Y TCGA-AC-A6IV TCGA-AC-A6IW 
       23.24        24.79         1.55        17.42        18.67        13.58 
TCGA-AC-A6IX TCGA-AC-A6NO TCGA-AC-A7VB TCGA-AC-A7VC TCGA-AC-A8OQ TCGA-AC-A8OR 
       12.26         1.68         8.22         0.03         1.12         1.32 
TCGA-AC-A8OS TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A041 TCGA-AN-A046 TCGA-AN-A049 
        2.30         0.33         0.33         0.23         0.33         0.62 
TCGA-AN-A04A TCGA-AN-A04D TCGA-AN-A0AK TCGA-AN-A0AL TCGA-AN-A0AR TCGA-AN-A0AT 
        2.96         1.71         7.36         6.51         0.33         0.33 
TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FN 
        6.44         5.65         7.96         7.00         7.59         7.17 
TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FW TCGA-AN-A0FX TCGA-AN-A0FY TCGA-AN-A0FZ 
        6.28         7.04         0.36         0.33         0.33         0.33 
TCGA-AN-A0XL TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS TCGA-AN-A0XT 
        0.33        12.33         0.30         0.33         0.33         0.33 
TCGA-AN-A0XU TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03L TCGA-AO-A03M TCGA-AO-A03R 
        0.33         5.33         5.59        80.28        61.35        68.75 
TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J4 TCGA-AO-A0J5 
       47.87        58.95        32.78        21.40        52.18        26.04 
TCGA-AO-A0J6 TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JC 
       37.48        20.32        22.36        21.53        50.70        50.86 
TCGA-AO-A0JD TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JG TCGA-AO-A0JI TCGA-AO-A0JJ 
       72.00        76.77        21.37        26.24        50.24        62.04 
TCGA-AO-A0JM TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A129 TCGA-AO-A12B TCGA-AO-A12E 
       71.80        99.25       108.72       108.03        98.27        57.30 
TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KT 
       48.36        41.62        28.37        14.73        82.62        17.79 
TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A0Y5 TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AQ-A54O 
       24.79        26.93         5.65        15.62        32.52        32.91 
TCGA-AQ-A7U7 TCGA-AR-A0TP TCGA-AR-A0TQ TCGA-AR-A0TR TCGA-AR-A0TS TCGA-AR-A0TV 
       19.20       111.32        73.64         5.26        74.79        42.35 
TCGA-AR-A0TW TCGA-AR-A0TX TCGA-AR-A0TY TCGA-AR-A0TZ TCGA-AR-A0U0 TCGA-AR-A0U1 
       98.93        64.83        55.86       107.24        65.36       101.95 
TCGA-AR-A0U2 TCGA-AR-A0U3 TCGA-AR-A0U4 TCGA-AR-A1AH TCGA-AR-A1AK TCGA-AR-A1AL 
       83.87       114.02        85.97        75.55        51.25        48.82 
TCGA-AR-A1AM TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AR TCGA-AR-A1AS 
       76.11        43.73        43.56        39.98        17.23        37.81 
TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24L 
       76.21        61.28        62.14        33.73       160.90        94.22 
TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24Q TCGA-AR-A24R 
       96.89        78.51        84.20         2.76       104.28        87.22 
TCGA-AR-A24T TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A251 
       76.01        50.96        83.77        79.00        89.00        78.48 
TCGA-AR-A252 TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ 
       73.18        58.92        93.83       143.21        20.25        62.86 
TCGA-AR-A2LK TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A2LR 
       54.21        52.11        38.17        39.39        40.54        20.38 
TCGA-AR-A5QM TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I2 TCGA-B6-A0I5 
       54.74        16.04        20.45        10.59       143.38       149.59 
TCGA-B6-A0I9 TCGA-B6-A0IA TCGA-B6-A0IB TCGA-B6-A0IC TCGA-B6-A0IG TCGA-B6-A0IH 
       12.13       220.90       129.57        50.70       146.50       112.37 
TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IP TCGA-B6-A0IQ 
      176.98        18.77       126.12        84.59       110.93       140.88 
TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RM TCGA-B6-A0RN 
      211.56        68.45       189.01       234.28        78.02       172.96 
TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RU TCGA-B6-A0RV TCGA-B6-A0WS 
      102.77       140.48        89.46       131.21       157.41        97.48 
TCGA-B6-A0WT TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WY TCGA-B6-A0WZ TCGA-B6-A0X0 
      188.68        18.35        21.47       113.79       129.57       129.70 
TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KF TCGA-B6-A1KI 
      186.48        28.27        68.94        58.88       101.52        73.51 
TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A401 TCGA-B6-A402 TCGA-B6-A408 TCGA-B6-A40C 
      139.17       170.17        85.35        74.99        68.12        71.15 
TCGA-BH-A0AV TCGA-BH-A0AW TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B2 TCGA-BH-A0B3 
       59.84        20.45        28.50        46.95        40.83        39.55 
TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0B7 TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BD 
       39.16        48.36        56.98        37.22        32.02        18.21 
TCGA-BH-A0BF TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BP 
       25.71        24.85        21.70        61.68        35.67        48.69 
TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0BW 
       27.19        53.69        53.95        45.57        49.94        11.67 
TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DD 
       49.05        41.75        44.02        48.13        42.90        45.83 
TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL 
       31.17        23.44        38.01        22.13        13.91        48.23 
TCGA-BH-A0DO TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ 
       17.26        15.65         3.22        67.86        47.41        16.27 
TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E9 TCGA-BH-A0EB TCGA-BH-A0EI 
        4.41        15.68        14.30        46.19        24.49        24.43 
TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 
       30.35        10.78        15.16        37.78        35.51        24.56 
TCGA-BH-A0H7 TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HI TCGA-BH-A0HK 
       23.08        41.00        52.96        26.50        20.38         5.85 
TCGA-BH-A0HO TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0HY 
        2.50        36.85        12.89        51.32        27.25        50.79 
TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A0WA 
        5.59        23.93        24.95        42.35        44.81        23.05 
TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18K TCGA-BH-A18M 
        8.81         2.01         7.23        20.12        90.84        72.56 
TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18S TCGA-BH-A18U TCGA-BH-A18V 
       37.74        30.28        55.63        66.05        51.39        51.16 
TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EW TCGA-BH-A1EX TCGA-BH-A1F0 
      113.82        82.85        42.28        55.69        49.58        25.81 
TCGA-BH-A1F5 TCGA-BH-A1F6 TCGA-BH-A1F8 TCGA-BH-A1FB TCGA-BH-A1FC TCGA-BH-A1FD 
       89.16        97.48        24.66       120.62       114.15        33.17 
TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FM 
       74.73       122.89        36.92        63.35        55.00        45.63 
TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A203 TCGA-BH-A204 
      144.59        72.07        28.14        26.14        38.60        83.31 
TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42T 
       57.83       130.16        10.65         6.44        20.12        10.52 
TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-BH-A6R8 TCGA-BH-A6R9 
      109.28         8.94        18.64        23.51         9.63         5.26 
TCGA-BH-A8FY TCGA-BH-A8FZ TCGA-BH-A8G0 TCGA-BH-AB28 TCGA-C8-A12L TCGA-C8-A12M 
        9.70        18.87        21.76         9.44        11.93        11.77 
TCGA-C8-A12N TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12U TCGA-C8-A12V TCGA-C8-A12W 
       11.77        11.77        12.66        12.66        12.66        12.66 
TCGA-C8-A12X TCGA-C8-A12Z TCGA-C8-A131 TCGA-C8-A134 TCGA-C8-A135 TCGA-C8-A137 
       12.66         0.39         2.24         1.12         1.05         4.11 
TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HJ TCGA-C8-A1HL 
       12.33        10.92        11.34        11.28         0.16        10.42 
TCGA-C8-A1HN TCGA-C8-A26V TCGA-C8-A26X TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A273 
        3.25         0.30         0.36         0.43         8.28         9.67 
TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A3M8 
        0.03         9.50        12.20         0.99         0.03         0.23 
TCGA-C8-A8HQ TCGA-C8-A8HR TCGA-C8-A9FZ TCGA-D8-A13Y TCGA-D8-A140 TCGA-D8-A141 
       12.49        13.41        19.46        11.90        13.25        20.58 
TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A145 TCGA-D8-A146 TCGA-D8-A1J8 TCGA-D8-A1J9 
       13.97        14.17        13.48        21.14        14.17        17.49 
TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JG TCGA-D8-A1JH TCGA-D8-A1JI 
       16.50        18.71        15.78        12.03        14.01        18.97 
TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1JP 
       20.09        20.12        20.09        19.40        20.38        21.01 
TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X7 
       12.20        13.32        14.70        18.58        17.79        16.73 
TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XD 
       25.74        23.90        27.58        18.15        12.39        17.16 
TCGA-D8-A1XF TCGA-D8-A1XG TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XM TCGA-D8-A1XO 
       15.22        14.73        21.83        14.50        17.69        15.55 
TCGA-D8-A1XQ TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1XV 
       16.41        15.85        16.31         6.35        12.99        15.16 
TCGA-D8-A1XW TCGA-D8-A1XY TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 
       12.66        16.54        15.32        15.52         9.93        14.24 
TCGA-D8-A1Y3 TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27I 
       14.14        17.42        16.04        13.45        13.05        14.43 
TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27R 
        9.44        16.41        13.48         4.80         0.76        10.09 
TCGA-D8-A27T TCGA-D8-A27V TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 
       13.08        12.53        12.26        33.37        18.51        21.67 
TCGA-D8-A73U TCGA-D8-A73W TCGA-D8-A73X TCGA-E2-A105 TCGA-E2-A108 TCGA-E2-A109 
       16.18         8.02        12.10        43.00        27.52        46.59 
TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14P 
       40.41        37.51        28.44        28.87        47.15        40.96 
TCGA-E2-A14Q TCGA-E2-A14R TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V 
       38.24        38.60        33.17        33.30        43.33        34.26 
TCGA-E2-A14W TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A152 TCGA-E2-A153 TCGA-E2-A155 
       32.02        31.96        28.60        27.12        23.24        21.04 
TCGA-E2-A156 TCGA-E2-A158 TCGA-E2-A159 TCGA-E2-A15A TCGA-E2-A15C TCGA-E2-A15D 
       23.87        14.79        25.05        23.34        22.82        17.29 
TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15H TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K 
       20.71        21.63        12.92        17.42        19.40         9.04 
TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15O TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A15T 
       20.58        11.05        13.02        19.56        17.06        14.99 
TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BC 
       53.62        53.03        33.01        32.35        28.50        16.47 
TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1IH TCGA-E2-A1II 
       17.10        38.30        37.41        32.78        33.73        33.70 
TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IO TCGA-E2-A1IU 
       28.44        22.65         3.88        22.19        20.98        11.08 
TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L8 TCGA-E2-A1L9 TCGA-E2-A1LA TCGA-E2-A1LB 
       54.18        27.42        39.62        19.66        24.59        40.47 
TCGA-E2-A1LE TCGA-E2-A1LG TCGA-E2-A1LH TCGA-E2-A1LK TCGA-E2-A1LL TCGA-E2-A2P6 
       28.90        18.87       106.75         8.75        43.04         5.52 
TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A573 TCGA-E2-A574 TCGA-E2-A576 
       15.72         8.28        30.61        34.92        26.56        34.29 
TCGA-E2-A9RU TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N8 TCGA-E9-A1NA 
       12.85        34.82        32.88        36.82        12.00        36.56 
TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1NI 
       39.55        12.59        35.77        35.24        25.84         9.86 
TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R5 TCGA-E9-A1R6 
       11.90        28.27        34.95         2.56         3.02         2.76 
TCGA-E9-A1R7 TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RD TCGA-E9-A1RE 
       21.21        32.09        32.09        40.24         1.12        34.65 
TCGA-E9-A1RF TCGA-E9-A1RG TCGA-E9-A1RI TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A228 
        6.58        21.27        35.64        34.13        32.05        12.53 
TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A22H 
       13.32        39.09        41.03        12.89        23.51        20.71 
TCGA-E9-A243 TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A295 TCGA-E9-A2JS 
       17.06         1.94         7.13        24.56         0.72        29.72 
TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3QA TCGA-E9-A3X8 TCGA-E9-A54X 
        0.76        26.07        18.41        30.18        15.72        12.33 
TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UO TCGA-E9-A6HE TCGA-EW-A1IW 
       23.84        14.70         0.79        13.81        15.39        12.20 
TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1J3 
       39.72         8.48        18.21        18.90        13.25        16.57 
TCGA-EW-A1J5 TCGA-EW-A1J6 TCGA-EW-A1OW TCGA-EW-A1OX TCGA-EW-A1OY TCGA-EW-A1P0 
       15.68        28.77        22.82        29.95        29.85        41.13 
TCGA-EW-A1P1 TCGA-EW-A1P3 TCGA-EW-A1P5 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1PA 
       39.78        52.96        23.11        18.48        30.08        18.90 
TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PF TCGA-EW-A1PG 
       19.99         6.15        13.94        10.52        14.43        34.55 
TCGA-EW-A1PH TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A2FW TCGA-EW-A3E8 
       19.96        55.00        52.73        25.91        22.09        34.03 
TCGA-EW-A3U0 TCGA-EW-A424 TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2D9 TCGA-GM-A2DA 
       17.49        23.51         7.40       109.87        59.57       216.76 
TCGA-GM-A2DC TCGA-GM-A2DD TCGA-GM-A2DF TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL 
       83.34        75.02        70.85        85.15        86.96       115.69 
TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A2DO TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG 
      106.06       101.62        85.35       110.50        38.20        43.73 
TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2NL TCGA-HN-A2OB 
       66.38        72.03        13.55        18.12         2.60        62.43 
TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LD-A66U TCGA-LD-A74U TCGA-LD-A7W6 TCGA-LL-A440 
       11.84        11.57        21.24        13.22        13.28        24.95 
TCGA-LL-A441 TCGA-LL-A442 TCGA-LL-A50Y TCGA-LL-A5YL TCGA-LL-A5YM TCGA-LL-A5YN 
       11.44        10.95        25.05        17.06        15.32        14.70 
TCGA-LL-A5YP TCGA-LL-A6FP TCGA-LL-A6FR TCGA-LL-A73Y TCGA-LL-A740 TCGA-LL-A7SZ 
       14.79        22.26        16.08        15.68        14.50        14.70 
TCGA-LL-A7T0 TCGA-LL-A8F5 TCGA-LL-A9Q3 TCGA-LQ-A4E4 TCGA-OK-A5Q2 TCGA-OL-A5D6 
       12.36        14.73        14.07        27.91         2.10        36.30 
TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RU TCGA-OL-A5RV TCGA-OL-A5RW 
       58.52        31.99        58.62        40.08        34.92        36.36 
TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J 
       28.87        24.72        22.32        26.70        23.47        65.62 
TCGA-OL-A66K TCGA-OL-A66L TCGA-OL-A66N TCGA-OL-A66O TCGA-OL-A66P TCGA-OL-A6VO 
       41.92        42.77        26.04        17.36        14.07        28.21 
TCGA-OL-A6VQ TCGA-OL-A6VR TCGA-OL-A97C TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE 
       19.73        40.11         8.91        47.01        64.21        86.96 
TCGA-PL-A8LX TCGA-PL-A8LY TCGA-PL-A8LZ TCGA-S3-A6ZF TCGA-S3-A6ZG TCGA-S3-A6ZH 
        0.16         0.26         9.93        16.50        13.12        16.93 
TCGA-S3-AA0Z TCGA-S3-AA11 TCGA-S3-AA12 TCGA-S3-AA14 TCGA-S3-AA15 TCGA-S3-AA17 
       16.80        13.84        15.35        14.96        13.84        13.94 
TCGA-UL-AAZ6 TCGA-UU-A93S TCGA-W8-A86G TCGA-WT-AB41 TCGA-WT-AB44 TCGA-XX-A899 
       17.03         3.81        11.41        52.96        29.03        15.35 
TCGA-XX-A89A TCGA-Z7-A8R5 TCGA-Z7-A8R6 
       16.04       108.07       107.05 

  AMP PEAK 14(10Q22.3) MUTATED AMP PEAK 14(10Q22.3) WILD-TYPE 
                          0.16                           0.03 
  AMP PEAK 14(10Q22.3) MUTATED AMP PEAK 14(10Q22.3) WILD-TYPE 
                        162.05                         234.28 
  AMP PEAK 14(10Q22.3) MUTATED AMP PEAK 14(10Q22.3) WILD-TYPE 
                         25.55                          24.26 
[1] "0.2 - 162.1 (25.6)" "0.0 - 234.3 (24.3)"
[1] "hr=" "1.5"
D14V2, continuous
                                vv
clus                             STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  AMP PEAK 14(10Q22.3) MUTATED        10       10        0        0        61
  AMP PEAK 14(10Q22.3) WILD-TYPE      79       71        8        3       292
                                vv
clus                             STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  AMP PEAK 14(10Q22.3) MUTATED          27         0         24          5
  AMP PEAK 14(10Q22.3) WILD-TYPE       218         2        126         24
                                vv
clus                             STAGE IIIC STAGE IV STAGE TIS STAGE X
  AMP PEAK 14(10Q22.3) MUTATED            6        3         1       1
  AMP PEAK 14(10Q22.3) WILD-TYPE         57       17         0      12
D14V3, multiclass
            clus
vv           AMP PEAK 14(10Q22.3) MUTATED AMP PEAK 14(10Q22.3) WILD-TYPE
  STAGE I                              10                             79
  STAGE IA                             10                             71
  STAGE IB                              0                              8
  STAGE II                              0                              3
  STAGE IIA                            61                            292
  STAGE IIB                            27                            218
  STAGE III                             0                              2
  STAGE IIIA                           24                            126
  STAGE IIIB                            5                             24
  STAGE IIIC                            6                             57
  STAGE IV                              3                             17
  STAGE TIS                             1                              0
  STAGE X                               1                             12
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              T1  T2  T3  T4
  AMP PEAK 14(10Q22.3) MUTATED    28  98  17   6
  AMP PEAK 14(10Q22.3) WILD-TYPE 244 518 113  34
D14V4, multiclass
    clus
vv   AMP PEAK 14(10Q22.3) MUTATED AMP PEAK 14(10Q22.3) WILD-TYPE
  T1                           28                            244
  T2                           98                            518
  T3                           17                            113
  T4                            6                             34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              N0  N1  N2  N3
  AMP PEAK 14(10Q22.3) MUTATED    77  41  21   8
  AMP PEAK 14(10Q22.3) WILD-TYPE 424 309  96  67
D14V5, multiclass
    clus
vv   AMP PEAK 14(10Q22.3) MUTATED AMP PEAK 14(10Q22.3) WILD-TYPE
  N0                           77                            424
  N1                           41                            309
  N2                           21                             96
  N3                            8                             67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D14V6, binary
                                cls
clus                               0   1
  AMP PEAK 14(10Q22.3) MUTATED   135   3
  AMP PEAK 14(10Q22.3) WILD-TYPE 744  18
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 14(10Q22.3) MUTATED    135    3
  AMP PEAK 14(10Q22.3) WILD-TYPE  744   18
   clus
vv  AMP PEAK 14(10Q22.3) MUTATED AMP PEAK 14(10Q22.3) WILD-TYPE
  0                          135                            744
  1                            3                             18
[1] 2 2
[1] FALSE
D14V7, binary
                                cls
clus                               0   1
  AMP PEAK 14(10Q22.3) MUTATED   148   2
  AMP PEAK 14(10Q22.3) WILD-TYPE 903   9
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 14(10Q22.3) MUTATED    148    2
  AMP PEAK 14(10Q22.3) WILD-TYPE  903    9
        clus
vv       AMP PEAK 14(10Q22.3) MUTATED AMP PEAK 14(10Q22.3) WILD-TYPE
  FEMALE                          148                            903
  MALE                              2                              9
[1] 2 2
[1] FALSE
                                vv
clus                             INFILTRATING CARCINOMA NOS
  AMP PEAK 14(10Q22.3) MUTATED                            0
  AMP PEAK 14(10Q22.3) WILD-TYPE                          1
                                vv
clus                             INFILTRATING DUCTAL CARCINOMA
  AMP PEAK 14(10Q22.3) MUTATED                             125
  AMP PEAK 14(10Q22.3) WILD-TYPE                           638
                                vv
clus                             INFILTRATING LOBULAR CARCINOMA
  AMP PEAK 14(10Q22.3) MUTATED                               11
  AMP PEAK 14(10Q22.3) WILD-TYPE                            181
                                vv
clus                             MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  AMP PEAK 14(10Q22.3) MUTATED                     3                     1
  AMP PEAK 14(10Q22.3) WILD-TYPE                   3                     3
                                vv
clus                             MIXED HISTOLOGY (PLEASE SPECIFY)
  AMP PEAK 14(10Q22.3) MUTATED                                  4
  AMP PEAK 14(10Q22.3) WILD-TYPE                               26
                                vv
clus                             MUCINOUS CARCINOMA OTHER  SPECIFY
  AMP PEAK 14(10Q22.3) MUTATED                    0              6
  AMP PEAK 14(10Q22.3) WILD-TYPE                 17             42
D14V8, multiclass
                                  clus
vv                                 AMP PEAK 14(10Q22.3) MUTATED
  INFILTRATING CARCINOMA NOS                                  0
  INFILTRATING DUCTAL CARCINOMA                             125
  INFILTRATING LOBULAR CARCINOMA                             11
  MEDULLARY CARCINOMA                                         3
  METAPLASTIC CARCINOMA                                       1
  MIXED HISTOLOGY (PLEASE SPECIFY)                            4
  MUCINOUS CARCINOMA                                          0
  OTHER  SPECIFY                                              6
                                  clus
vv                                 AMP PEAK 14(10Q22.3) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                    1
  INFILTRATING DUCTAL CARCINOMA                               638
  INFILTRATING LOBULAR CARCINOMA                              181
  MEDULLARY CARCINOMA                                           3
  METAPLASTIC CARCINOMA                                         3
  MIXED HISTOLOGY (PLEASE SPECIFY)                             26
  MUCINOUS CARCINOMA                                           17
  OTHER  SPECIFY                                               42
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D14V9, binary
                                cls
clus                               0   1
  AMP PEAK 14(10Q22.3) MUTATED    49 101
  AMP PEAK 14(10Q22.3) WILD-TYPE 239 673
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 14(10Q22.3) MUTATED     49  101
  AMP PEAK 14(10Q22.3) WILD-TYPE  239  673
     clus
vv    AMP PEAK 14(10Q22.3) MUTATED AMP PEAK 14(10Q22.3) WILD-TYPE
  NO                            49                            239
  YES                          101                            673
[1] 2 2
[1] FALSE
D14V10, continuous
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK 14(10Q22.3) MUTATED                                  1    10
  AMP PEAK 14(10Q22.3) WILD-TYPE                                0    50
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 14(10Q22.3) MUTATED                          27    99
  AMP PEAK 14(10Q22.3) WILD-TYPE                       143   637
D14V11, multiclass
                                  clus
vv                                 AMP PEAK 14(10Q22.3) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            1
  ASIAN                                                      10
  BLACK OR AFRICAN AMERICAN                                  27
  WHITE                                                      99
                                  clus
vv                                 AMP PEAK 14(10Q22.3) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              0
  ASIAN                                                        50
  BLACK OR AFRICAN AMERICAN                                   143
  WHITE                                                       637
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D14V12, binary
                                cls
clus                               0   1
  AMP PEAK 14(10Q22.3) MUTATED     5 119
  AMP PEAK 14(10Q22.3) WILD-TYPE  33 739
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 14(10Q22.3) MUTATED      5  119
  AMP PEAK 14(10Q22.3) WILD-TYPE   33  739
                        clus
vv                       AMP PEAK 14(10Q22.3) MUTATED
  HISPANIC OR LATINO                                5
  NOT HISPANIC OR LATINO                          119
                        clus
vv                       AMP PEAK 14(10Q22.3) WILD-TYPE
  HISPANIC OR LATINO                                 33
  NOT HISPANIC OR LATINO                            739
[1] 2 2
[1] FALSE

Clustering(15) Variable = AMP PEAK 15(11P13) MUTATION ANALYSIS
D15V1, survival
                              sevent
clus2                            0   1
  AMP PEAK 15(11P13) MUTATED   190  28
  AMP PEAK 15(11P13) WILD-TYPE 726 100
  AMP PEAK 15(11P13) MUTATED AMP PEAK 15(11P13) WILD-TYPE 
                         218                          826 
  AMP PEAK 15(11P13) MUTATED AMP PEAK 15(11P13) WILD-TYPE 
                          28                          100 
$`AMP PEAK 15(11P13) MUTATED`
TCGA-3C-AAAU TCGA-5T-A9QA TCGA-A1-A0SI TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SO 
      129.14         9.96        20.88        31.79         7.96        28.01 
TCGA-A2-A04P TCGA-A2-A04U TCGA-A2-A04W TCGA-A2-A04X TCGA-A2-A0CM TCGA-A2-A0CT 
       18.02        87.25       101.98        55.43        24.79        75.25 
TCGA-A2-A0D2 TCGA-A2-A0EO TCGA-A2-A0EQ TCGA-A2-A0ER TCGA-A2-A0EU TCGA-A2-A0EY 
       33.76        80.28        79.76        74.40        34.29        63.29 
TCGA-A2-A0ST TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T7 
       99.19        17.52        17.13         8.38        49.84        20.75 
TCGA-A2-A0YE TCGA-A2-A0YI TCGA-A2-A1FW TCGA-A2-A1FX TCGA-A2-A1G1 TCGA-A2-A3KD 
       18.21        49.48        17.36        60.72        19.20        39.65 
TCGA-A2-A3XT TCGA-A7-A0CD TCGA-A7-A0CJ TCGA-A7-A0DC TCGA-A7-A26F TCGA-A7-A26G 
       83.01        38.30        30.61        29.79        24.26        23.74 
TCGA-A7-A26J TCGA-A7-A3J0 TCGA-A7-A425 TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A5ZV 
       20.61        10.29        14.70        14.50        21.17        12.10 
TCGA-A7-A6VV TCGA-A7-A6VX TCGA-A8-A075 TCGA-A8-A079 TCGA-A8-A07F TCGA-A8-A07R 
       10.29        10.42        17.03         9.01        18.97         8.98 
TCGA-A8-A07W TCGA-A8-A082 TCGA-A8-A08B TCGA-A8-A08S TCGA-A8-A091 TCGA-A8-A093 
        9.99        18.05        38.01        33.01        33.01        17.95 
TCGA-A8-A09A TCGA-A8-A09I TCGA-A8-A09K TCGA-A8-A09M TCGA-A8-A09Q TCGA-A8-A0A1 
        9.99        45.07        29.98        33.07        25.02        12.00 
TCGA-A8-A0A6 TCGA-A8-A0A7 TCGA-AC-A23C TCGA-AC-A23H TCGA-AC-A2BK TCGA-AC-A2FM 
       21.04         0.99         0.95         5.72        38.53        26.04 
TCGA-AC-A62V TCGA-AC-A62Y TCGA-AC-A8OP TCGA-AN-A04C TCGA-AN-A0AJ TCGA-AN-A0AL 
       11.44        17.42        20.19         1.78         9.96         6.51 
TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FY 
        0.33         0.33         7.96         7.00         7.59         0.33 
TCGA-AN-A0XL TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AO-A03L TCGA-AO-A0J2 TCGA-AO-A0J3 
        0.33         0.33         0.33        80.28        32.78        21.40 
TCGA-AO-A0JD TCGA-AO-A126 TCGA-AO-A129 TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A1KQ 
       72.00       108.72       108.03        90.58        98.27        61.87 
TCGA-AO-A1KS TCGA-AO-A1KT TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A1H2 TCGA-AR-A0TT 
        0.53        17.79        26.93       130.09        15.62        86.66 
TCGA-AR-A0TW TCGA-AR-A0TX TCGA-AR-A0U2 TCGA-AR-A1AI TCGA-AR-A1AU TCGA-AR-A24K 
       98.93        64.83        83.87        61.84        76.21        50.89 
TCGA-AR-A24R TCGA-AR-A24S TCGA-AR-A24V TCGA-AR-A250 TCGA-AR-A2LR TCGA-B6-A0I2 
       87.22        97.84        85.35        89.00        20.38       143.38 
TCGA-B6-A0IB TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RS 
      129.57       146.50       112.37       211.56        68.45       100.70 
TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A1KI TCGA-B6-A408 
      188.68        79.63       129.70       186.48        73.51        68.12 
TCGA-BH-A0AU TCGA-BH-A0AY TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BP TCGA-BH-A0BT 
       24.53        25.55        24.85        21.70        48.69        45.57 
TCGA-BH-A0C0 TCGA-BH-A0DD TCGA-BH-A0DO TCGA-BH-A0DP TCGA-BH-A0DZ TCGA-BH-A0EI 
       41.75        45.83        17.26        15.65        16.27        24.43 
TCGA-BH-A0GY TCGA-BH-A0H7 TCGA-BH-A0HB TCGA-BH-A18M TCGA-BH-A18U TCGA-BH-A18V 
       30.35        23.08        26.50        72.56        51.39        51.16 
TCGA-BH-A1EN TCGA-BH-A1EO TCGA-BH-A1F2 TCGA-BH-A1F6 TCGA-BH-A202 TCGA-BH-A208 
       69.93        91.99        31.53        97.48        26.14        57.83 
TCGA-BH-A209 TCGA-C8-A12O TCGA-C8-A12U TCGA-C8-A132 TCGA-C8-A26Z TCGA-C8-A27A 
      130.16        12.66        12.66         1.87         8.28        12.20 
TCGA-C8-A27B TCGA-C8-A8HR TCGA-D8-A140 TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A147 
        0.99        13.41        13.25        13.97        14.17        19.20 
TCGA-D8-A1JD TCGA-D8-A1XF TCGA-D8-A1XK TCGA-D8-A1XL TCGA-D8-A1XY TCGA-D8-A1Y0 
       18.15        15.22        14.50        19.92        16.54        15.52 
TCGA-D8-A1Y3 TCGA-D8-A27R TCGA-E2-A14O TCGA-E2-A14V TCGA-E2-A152 TCGA-E2-A15A 
       14.14        10.09        44.68        34.26        27.12        23.34 
TCGA-E2-A15M TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A1BC TCGA-E2-A1II TCGA-E2-A1IU 
       11.05        17.06        14.07        16.47        33.70        11.08 
TCGA-E2-A1L7 TCGA-E2-A574 TCGA-E2-A9RU TCGA-E9-A1N5 TCGA-E9-A1N8 TCGA-E9-A1R4 
       27.42        26.56        12.85        36.82        12.00         6.12 
TCGA-E9-A1R6 TCGA-E9-A1RB TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A243 TCGA-E9-A247 
        2.76        32.09        34.65         6.58        17.06        27.22 
TCGA-E9-A249 TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A3QA TCGA-E9-A5FL TCGA-EW-A1J1 
        7.13         0.72        29.72        30.18         0.79        18.90 
TCGA-EW-A1J6 TCGA-EW-A1OY TCGA-EW-A1P5 TCGA-EW-A1P7 TCGA-EW-A1P8 TCGA-EW-A1PB 
       28.77        29.85        23.11        30.08         7.86        19.99 
TCGA-EW-A1PC TCGA-EW-A3U0 TCGA-EW-A423 TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2DA 
        6.15        17.49        10.16         7.40       109.87       216.76 
TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A2DL TCGA-HN-A2NL TCGA-LL-A5YN TCGA-LL-A5YP 
       70.85        72.10       115.69         2.60        14.70        14.79 
TCGA-LL-A6FQ TCGA-LL-A73Y TCGA-OL-A5RW TCGA-OL-A66I TCGA-OL-A6VO TCGA-PL-A8LZ 
        2.63        15.68        36.36        23.47        28.21         9.93 
TCGA-S3-AA17 TCGA-Z7-A8R6 
       13.94       107.05 

$`AMP PEAK 15(11P13) WILD-TYPE`
TCGA-3C-AALI TCGA-3C-AALJ TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT0 TCGA-5L-AAT1 
      131.67        42.81        40.14        11.44        48.56        48.36 
TCGA-A1-A0SB TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH 
        8.52        14.37        43.43        48.10        14.27        47.24 
TCGA-A1-A0SJ TCGA-A1-A0SN TCGA-A1-A0SP TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04Q 
       13.68        39.32        19.20        18.21       104.81        78.41 
TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04V TCGA-A2-A04Y TCGA-A2-A0CK TCGA-A2-A0CL 
      121.94        73.84        63.12        36.13       136.73        99.12 
TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CQ TCGA-A2-A0CR TCGA-A2-A0CS TCGA-A2-A0CU 
      114.81        92.48        88.60       107.93        75.55         5.19 
TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0CX TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D3 
       98.99       107.93        56.81        67.33        34.55        61.58 
TCGA-A2-A0D4 TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EP TCGA-A2-A0ES TCGA-A2-A0ET 
       25.22       101.72       134.40       107.61        72.00        35.05 
TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW 
       31.82        61.94        24.72        54.64        27.12        44.88 
TCGA-A2-A0SX TCGA-A2-A0SY TCGA-A2-A0T4 TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0YC 
       50.43        44.28        20.52        17.46        18.90        32.55 
TCGA-A2-A0YD TCGA-A2-A0YF TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A0YJ TCGA-A2-A0YK 
       25.28        50.47        21.90        21.67        18.61        19.33 
TCGA-A2-A0YL TCGA-A2-A0YM TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FZ TCGA-A2-A1G0 
       48.46        31.73        23.77        23.47        22.45        20.25 
TCGA-A2-A1G4 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25A TCGA-A2-A25B TCGA-A2-A25C 
       19.56        16.47        52.47       107.70        42.44        17.19 
TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3XS TCGA-A2-A3XU 
       18.15       105.34        10.59        20.88        33.93        29.98 
TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A3Y0 
       32.75        49.48        47.31        34.98        50.37        38.37 
TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S2 
        7.30        24.39        21.30        23.21        26.96        21.14 
TCGA-A2-A4S3 TCGA-A7-A0CE TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0D9 TCGA-A7-A0DA 
       21.90        35.31        34.29        35.47        37.45        35.67 
TCGA-A7-A0DB TCGA-A7-A13D TCGA-A7-A13E TCGA-A7-A13F TCGA-A7-A13G TCGA-A7-A13H 
       33.11        31.73        20.19        25.15        23.61        29.56 
TCGA-A7-A26E TCGA-A7-A26H TCGA-A7-A26I TCGA-A7-A2KD TCGA-A7-A3IY TCGA-A7-A3IZ 
       31.36        23.80        21.73        22.32        11.34        10.59 
TCGA-A7-A3J1 TCGA-A7-A3RF TCGA-A7-A426 TCGA-A7-A4SA TCGA-A7-A4SB TCGA-A7-A4SF 
       11.28        13.41        11.97        14.93        13.74        17.92 
TCGA-A7-A56D TCGA-A7-A5ZW TCGA-A7-A5ZX TCGA-A7-A6VW TCGA-A7-A6VY TCGA-A8-A06O 
       14.73        10.72        11.05         9.37         8.75        13.02 
TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06R TCGA-A8-A06T TCGA-A8-A06U TCGA-A8-A06X 
       13.02         1.02        17.98        53.06        29.03        31.00 
TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A076 TCGA-A8-A07B TCGA-A8-A07E TCGA-A8-A07G 
       26.01         1.02        53.98        43.00        19.99        18.97 
TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07L TCGA-A8-A07O TCGA-A8-A07P TCGA-A8-A07S 
       14.01        12.00        32.05         9.99        10.98         7.99 
TCGA-A8-A07U TCGA-A8-A07Z TCGA-A8-A084 TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A 
       24.99        45.07        15.06        36.95        13.02         0.99 
TCGA-A8-A08C TCGA-A8-A08F TCGA-A8-A08G TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L 
       28.96        33.01        19.96        12.00        37.05         9.99 
TCGA-A8-A08O TCGA-A8-A08P TCGA-A8-A08R TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A08Z 
       31.00        31.00         0.99       112.08        43.00        40.01 
TCGA-A8-A092 TCGA-A8-A095 TCGA-A8-A097 TCGA-A8-A099 TCGA-A8-A09B TCGA-A8-A09C 
       30.97        41.98        12.00         9.99        12.00         1.02 
TCGA-A8-A09D TCGA-A8-A09E TCGA-A8-A09N TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09V 
       50.04        49.05         1.02         8.98        19.04        15.02 
TCGA-A8-A09W TCGA-A8-A09X TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A9 TCGA-A8-A0AB 
        0.99        14.01        19.04        13.02        27.02        17.03 
TCGA-A8-A0AD TCGA-AC-A23E TCGA-AC-A23G TCGA-AC-A2B8 TCGA-AC-A2BM TCGA-AC-A2FB 
       38.04         2.37        10.85         1.48        99.35        40.57 
TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FO TCGA-AC-A2QH TCGA-AC-A2QI 
       55.43        36.99        38.79        50.70        33.04         0.92 
TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3TN 
        2.27        32.45        16.31        14.83        22.19        14.99 
TCGA-AC-A3W5 TCGA-AC-A3W6 TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A5XS TCGA-AC-A62X 
       16.57        19.79        23.24        24.79         1.55        13.71 
TCGA-AC-A6IV TCGA-AC-A6IW TCGA-AC-A6IX TCGA-AC-A6NO TCGA-AC-A7VB TCGA-AC-A7VC 
       18.67        13.58        12.26         1.68         8.22         0.03 
TCGA-AC-A8OQ TCGA-AC-A8OR TCGA-AC-A8OS TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A041 
        1.12         1.32         2.30         0.33         0.33         0.23 
TCGA-AN-A046 TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04D TCGA-AN-A0AK TCGA-AN-A0AM 
        0.33         0.62         2.96         1.71         7.36         0.16 
TCGA-AN-A0AR TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FT 
        0.33         6.44         5.65         7.17         6.28         7.04 
TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FX TCGA-AN-A0FZ TCGA-AN-A0XN TCGA-AN-A0XO 
        0.33         0.36         0.33         0.33         0.33        12.33 
TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03M 
        0.30         0.33         0.33         5.33         5.59        61.35 
TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03U 
       66.77        81.63        95.70        68.75        47.87        58.95 
TCGA-AO-A03V TCGA-AO-A0J4 TCGA-AO-A0J5 TCGA-AO-A0J6 TCGA-AO-A0J7 TCGA-AO-A0J8 
       29.13        52.18        26.04        37.48        20.32        22.36 
TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JC TCGA-AO-A0JE TCGA-AO-A0JF 
       53.03        21.53        50.70        50.86        76.77        21.37 
TCGA-AO-A0JG TCGA-AO-A0JI TCGA-AO-A0JJ TCGA-AO-A0JL TCGA-AO-A0JM TCGA-AO-A124 
       26.24        50.24        62.04        55.33        71.80       102.58 
TCGA-AO-A125 TCGA-AO-A128 TCGA-AO-A12D TCGA-AO-A12E TCGA-AO-A12F TCGA-AO-A12G 
       99.25       106.78        64.04        57.30        48.36        41.62 
TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KR TCGA-AQ-A04H TCGA-AQ-A0Y5 
       28.37        14.73        82.62        70.39        24.79         5.65 
TCGA-AQ-A1H3 TCGA-AQ-A54N TCGA-AQ-A54O TCGA-AQ-A7U7 TCGA-AR-A0TP TCGA-AR-A0TQ 
       32.52         2.56        32.91        19.20       111.32        73.64 
TCGA-AR-A0TR TCGA-AR-A0TS TCGA-AR-A0TV TCGA-AR-A0TY TCGA-AR-A0TZ TCGA-AR-A0U0 
        5.26        74.79        42.35        55.86       107.24        65.36 
TCGA-AR-A0U1 TCGA-AR-A0U3 TCGA-AR-A0U4 TCGA-AR-A1AH TCGA-AR-A1AJ TCGA-AR-A1AK 
      101.95       114.02        85.97        75.55        52.77        51.25 
TCGA-AR-A1AL TCGA-AR-A1AM TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AQ 
       48.82        76.11        43.73        43.56        39.98        43.07 
TCGA-AR-A1AR TCGA-AR-A1AS TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A1AY 
       17.23        37.81        61.28        63.62        62.14        33.73 
TCGA-AR-A24H TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P 
      160.90        94.22        96.89        78.51        84.20         2.76 
TCGA-AR-A24Q TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A24Z 
      104.28        76.01        53.36        50.96        83.77        79.00 
TCGA-AR-A251 TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LE 
       78.48        73.18        72.76        58.92        93.83       143.21 
TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LL TCGA-AR-A2LM TCGA-AR-A2LN 
       20.25        62.86        54.21        66.15        52.11        38.17 
TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A5QM TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ 
       39.39        40.54        54.74        16.04        20.45        10.59 
TCGA-B6-A0I1 TCGA-B6-A0I5 TCGA-B6-A0I9 TCGA-B6-A0IA TCGA-B6-A0IC TCGA-B6-A0IE 
       77.62       149.59        12.13       220.90        50.70        65.72 
TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IO TCGA-B6-A0IP 
      176.98        18.77       126.12        84.59       110.14       110.93 
TCGA-B6-A0IQ TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RL TCGA-B6-A0RM TCGA-B6-A0RN 
      140.88       189.01       234.28        81.17        78.02       172.96 
TCGA-B6-A0RO TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RU TCGA-B6-A0RV 
      162.05       102.77       140.48        89.46       131.21       157.41 
TCGA-B6-A0WS TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WY TCGA-B6-A0WZ TCGA-B6-A0X4 
       97.48        18.35        21.47       113.79       129.57        28.27 
TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A1KN TCGA-B6-A2IU 
       68.94        58.88        43.59       101.52       139.17       170.17 
TCGA-B6-A401 TCGA-B6-A402 TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AV TCGA-BH-A0AW 
       85.35        74.99       103.63        71.15        59.84        20.45 
TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B2 TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B5 
       28.50        46.95        40.83        39.55        39.16        48.36 
TCGA-BH-A0B6 TCGA-BH-A0B7 TCGA-BH-A0B9 TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BD 
       56.94        56.98        51.68        37.22        32.02        18.21 
TCGA-BH-A0BF TCGA-BH-A0BL TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BQ TCGA-BH-A0BR 
       25.71        44.05        61.68        35.67        27.19        53.69 
TCGA-BH-A0BS TCGA-BH-A0BV TCGA-BH-A0BW TCGA-BH-A0BZ TCGA-BH-A0C1 TCGA-BH-A0C3 
       53.95        49.94        11.67        49.05        44.02        48.13 
TCGA-BH-A0C7 TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DK 
       42.90        31.17        23.44        38.01        22.13        13.91 
TCGA-BH-A0DL TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX 
       48.23         3.22         2.56        38.47        67.86        47.41 
TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E6 TCGA-BH-A0E7 TCGA-BH-A0E9 
        4.41        15.68        14.30         9.63        44.81        46.19 
TCGA-BH-A0EA TCGA-BH-A0EB TCGA-BH-A0EE TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 
       32.58        24.49        31.00        10.78        15.16        37.78 
TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0HI TCGA-BH-A0HK 
       35.51        24.56        41.00        52.96        20.38         5.85 
TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HX 
        2.50        13.61        36.85        12.89        51.32        27.25 
TCGA-BH-A0HY TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 
       50.79         5.59        23.93        24.95        42.35        44.81 
TCGA-BH-A0WA TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18K 
       23.05         8.81         2.01         7.23        20.12        90.84 
TCGA-BH-A18L TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18R TCGA-BH-A18S 
       26.66        37.74        30.28        55.63        37.55        66.05 
TCGA-BH-A18T TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EW 
        7.36       113.82        82.85        42.28        12.00        55.69 
TCGA-BH-A1EX TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F5 TCGA-BH-A1F8 TCGA-BH-A1FB 
       49.58        17.69        25.81        89.16        24.66       120.62 
TCGA-BH-A1FC TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ 
      114.15        33.17        74.73       122.89        36.92        63.35 
TCGA-BH-A1FL TCGA-BH-A1FM TCGA-BH-A1FN TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A201 
       55.00        45.63        72.07       144.59        72.07        28.14 
TCGA-BH-A203 TCGA-BH-A204 TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42T 
       38.60        83.31        10.65         6.44        20.12        10.52 
TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-BH-A6R8 TCGA-BH-A6R9 
      109.28         8.94        18.64        23.51         9.63         5.26 
TCGA-BH-A8FY TCGA-BH-A8FZ TCGA-BH-A8G0 TCGA-BH-AB28 TCGA-C8-A12L TCGA-C8-A12M 
        9.70        18.87        21.76         9.44        11.93        11.77 
TCGA-C8-A12N TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12V TCGA-C8-A12W TCGA-C8-A12X 
       11.77        11.77        12.66        12.66        12.66        12.66 
TCGA-C8-A12Z TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A134 TCGA-C8-A135 TCGA-C8-A137 
        0.39         3.16         2.24         1.12         1.05         4.11 
TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HJ 
        4.08        12.33        10.92        11.34        11.28         0.16 
TCGA-C8-A1HK TCGA-C8-A1HL TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A26V TCGA-C8-A26W 
       12.03        10.42         2.30         3.25         0.30         0.23 
TCGA-C8-A26X TCGA-C8-A26Y TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A275 TCGA-C8-A278 
        0.36         0.43         9.67         9.53         0.03         9.50 
TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-C8-A8HP TCGA-C8-A8HQ TCGA-C8-A9FZ TCGA-D8-A13Y 
        0.03         0.23        13.02        12.49        19.46        11.90 
TCGA-D8-A13Z TCGA-D8-A141 TCGA-D8-A145 TCGA-D8-A146 TCGA-D8-A1J8 TCGA-D8-A1J9 
       20.88        20.58        13.48        21.14        14.17        17.49 
TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JE TCGA-D8-A1JF TCGA-D8-A1JG 
       16.50        18.71        15.78        18.90        12.03        12.03 
TCGA-D8-A1JH TCGA-D8-A1JI TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JM 
       14.01        18.97        20.09        20.12        20.09        19.40 
TCGA-D8-A1JN TCGA-D8-A1JP TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X5 
       20.38        21.01        12.20        13.32        14.70        18.58 
TCGA-D8-A1X6 TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XB 
       17.79        16.73        25.74        23.90        27.58        18.15 
TCGA-D8-A1XC TCGA-D8-A1XD TCGA-D8-A1XG TCGA-D8-A1XJ TCGA-D8-A1XM TCGA-D8-A1XO 
       12.39        17.16        14.73        21.83        17.69        15.55 
TCGA-D8-A1XQ TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1XV 
       16.41        15.85        16.31         6.35        12.99        15.16 
TCGA-D8-A1XW TCGA-D8-A1XZ TCGA-D8-A1Y1 TCGA-D8-A1Y2 TCGA-D8-A27E TCGA-D8-A27F 
       12.66        15.32         9.93        14.24        17.42        16.04 
TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27M 
       13.45        13.05        14.43         9.44        16.41        13.48 
TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27T TCGA-D8-A27V TCGA-D8-A27W TCGA-D8-A3Z5 
        4.80         0.76        13.08        12.53        12.26        33.37 
TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-D8-A73U TCGA-D8-A73W TCGA-D8-A73X TCGA-E2-A105 
       18.51        21.67        16.18         8.02        12.10        43.00 
TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10C 
       34.42        27.52        46.59        40.41        37.51        40.11 
TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14P TCGA-E2-A14Q TCGA-E2-A14R 
       28.44        28.87        47.15        40.96        38.24        38.60 
TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14W TCGA-E2-A14X TCGA-E2-A14Y 
       33.17        33.30        43.33        32.02        31.96        28.60 
TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A153 TCGA-E2-A154 TCGA-E2-A155 TCGA-E2-A156 
       18.51        25.41        23.24        19.43        21.04        23.87 
TCGA-E2-A158 TCGA-E2-A159 TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15E TCGA-E2-A15F 
       14.79        25.05        22.82        17.29        20.71        21.63 
TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L 
       18.21        12.92        17.42        19.40         9.04        20.58 
TCGA-E2-A15O TCGA-E2-A15P TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B1 
       13.02        19.56        14.99        60.53        53.62        53.03 
TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF 
       33.01        32.35        28.50        17.10        38.30        37.41 
TCGA-E2-A1IG TCGA-E2-A1IH TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN 
       32.78        33.73        28.44        22.65         3.88        22.19 
TCGA-E2-A1IO TCGA-E2-A1L6 TCGA-E2-A1L8 TCGA-E2-A1L9 TCGA-E2-A1LA TCGA-E2-A1LB 
       20.98        54.18        39.62        19.66        24.59        40.47 
TCGA-E2-A1LE TCGA-E2-A1LG TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A1LL 
       28.90        18.87       106.75       102.61         8.75        43.04 
TCGA-E2-A2P5 TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A573 
       16.93         5.52        15.72         8.28        30.61        34.92 
TCGA-E2-A576 TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N6 TCGA-E9-A1N9 TCGA-E9-A1NA 
       34.29        34.82        32.88        13.48        13.12        36.56 
TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1NI 
       39.55        12.59        35.77        35.24        25.84         9.86 
TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R5 TCGA-E9-A1R7 
       11.90        28.27        34.95         2.56         3.02        21.21 
TCGA-E9-A1RA TCGA-E9-A1RC TCGA-E9-A1RD TCGA-E9-A1RG TCGA-E9-A1RH TCGA-E9-A1RI 
       32.09        40.24         1.12        21.27        34.59        35.64 
TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22B 
       34.13        32.05        12.53        13.32        39.09        22.75 
TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A22H TCGA-E9-A244 TCGA-E9-A248 
       41.03        12.89        23.51        20.71         0.69         1.94 
TCGA-E9-A24A TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3X8 TCGA-E9-A54X 
       24.56         0.76        26.07        18.41        15.72        12.33 
TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5UO TCGA-E9-A5UP TCGA-E9-A6HE TCGA-EW-A1IW 
       23.84        14.70        13.81        14.40        15.39        12.20 
TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J5 
       39.72         8.48        18.21        13.25        16.57        15.68 
TCGA-EW-A1OV TCGA-EW-A1OW TCGA-EW-A1OX TCGA-EW-A1OZ TCGA-EW-A1P0 TCGA-EW-A1P1 
       25.94        22.82        29.95        40.41        41.13        39.78 
TCGA-EW-A1P3 TCGA-EW-A1P4 TCGA-EW-A1P6 TCGA-EW-A1PA TCGA-EW-A1PD TCGA-EW-A1PE 
       52.96        29.82        18.48        18.90        13.94        10.52 
TCGA-EW-A1PF TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FV 
       14.43        34.55        19.96        55.00        52.73        25.91 
TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A424 TCGA-GM-A2D9 TCGA-GM-A2DB TCGA-GM-A2DC 
       22.09        34.03        23.51        59.57        79.10        83.34 
TCGA-GM-A2DD TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A2DO 
       75.02        85.15        86.96       106.06       101.62        85.35 
TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XL TCGA-GM-A3XN TCGA-GM-A4E0 
      110.50        38.20        43.73        69.30        66.38        72.03 
TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2OB TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LD-A66U 
       13.55        18.12        62.43        11.84        11.57        21.24 
TCGA-LD-A74U TCGA-LD-A7W5 TCGA-LD-A7W6 TCGA-LD-A9QF TCGA-LL-A440 TCGA-LL-A441 
       13.22         7.10        13.28        10.62        24.95        11.44 
TCGA-LL-A442 TCGA-LL-A50Y TCGA-LL-A5YL TCGA-LL-A5YM TCGA-LL-A5YO TCGA-LL-A6FP 
       10.95        25.05        17.06        15.32        14.47        22.26 
TCGA-LL-A6FR TCGA-LL-A73Z TCGA-LL-A740 TCGA-LL-A7SZ TCGA-LL-A7T0 TCGA-LL-A8F5 
       16.08         7.46        14.50        14.70        12.36        14.73 
TCGA-LL-A9Q3 TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5D7 
       14.07        27.91        22.39         2.10        36.30        58.52 
TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RU TCGA-OL-A5RV TCGA-OL-A5RX TCGA-OL-A5RY 
       31.99        58.62        40.08        34.92        28.87        24.72 
TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66H TCGA-OL-A66J TCGA-OL-A66K TCGA-OL-A66L 
       22.32        20.38        26.70        65.62        41.92        42.77 
TCGA-OL-A66N TCGA-OL-A66O TCGA-OL-A66P TCGA-OL-A6VQ TCGA-OL-A6VR TCGA-OL-A97C 
       26.04        17.36        14.07        19.73        40.11         8.91 
TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE TCGA-PL-A8LX TCGA-PL-A8LY TCGA-S3-A6ZF 
       47.01        64.21        86.96         0.16         0.26        16.50 
TCGA-S3-A6ZG TCGA-S3-A6ZH TCGA-S3-AA0Z TCGA-S3-AA10 TCGA-S3-AA11 TCGA-S3-AA12 
       13.12        16.93        16.80        15.39        13.84        15.35 
TCGA-S3-AA14 TCGA-S3-AA15 TCGA-UL-AAZ6 TCGA-UU-A93S TCGA-W8-A86G TCGA-WT-AB41 
       14.96        13.84        17.03         3.81        11.41        52.96 
TCGA-WT-AB44 TCGA-XX-A899 TCGA-XX-A89A TCGA-Z7-A8R5 
       29.03        15.35        16.04       108.07 

  AMP PEAK 15(11P13) MUTATED AMP PEAK 15(11P13) WILD-TYPE 
                        0.33                         0.03 
  AMP PEAK 15(11P13) MUTATED AMP PEAK 15(11P13) WILD-TYPE 
                      216.76                       234.28 
  AMP PEAK 15(11P13) MUTATED AMP PEAK 15(11P13) WILD-TYPE 
                      24.345                       24.575 
[1] "0.3 - 216.8 (24.3)" "0.0 - 234.3 (24.6)"
[1] "hr=" "1.1"
D15V2, continuous
                              vv
clus                           STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  AMP PEAK 15(11P13) MUTATED        15       15        3        1        75
  AMP PEAK 15(11P13) WILD-TYPE      74       66        5        2       278
                              vv
clus                           STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  AMP PEAK 15(11P13) MUTATED          51         0         28          9
  AMP PEAK 15(11P13) WILD-TYPE       194         2        122         20
                              vv
clus                           STAGE IIIC STAGE IV STAGE TIS STAGE X
  AMP PEAK 15(11P13) MUTATED           11        6         0       3
  AMP PEAK 15(11P13) WILD-TYPE         52       14         1      10
D15V3, multiclass
            clus
vv           AMP PEAK 15(11P13) MUTATED AMP PEAK 15(11P13) WILD-TYPE
  STAGE I                            15                           74
  STAGE IA                           15                           66
  STAGE IB                            3                            5
  STAGE II                            1                            2
  STAGE IIA                          75                          278
  STAGE IIB                          51                          194
  STAGE III                           0                            2
  STAGE IIIA                         28                          122
  STAGE IIIB                          9                           20
  STAGE IIIC                         11                           52
  STAGE IV                            6                           14
  STAGE TIS                           0                            1
  STAGE X                             3                           10
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                            T1  T2  T3  T4
  AMP PEAK 15(11P13) MUTATED    49 134  24  10
  AMP PEAK 15(11P13) WILD-TYPE 223 482 106  30
D15V4, multiclass
    clus
vv   AMP PEAK 15(11P13) MUTATED AMP PEAK 15(11P13) WILD-TYPE
  T1                         49                          223
  T2                        134                          482
  T3                         24                          106
  T4                         10                           30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                            N0  N1  N2  N3
  AMP PEAK 15(11P13) MUTATED   104  70  25  14
  AMP PEAK 15(11P13) WILD-TYPE 397 280  92  61
D15V5, multiclass
    clus
vv   AMP PEAK 15(11P13) MUTATED AMP PEAK 15(11P13) WILD-TYPE
  N0                        104                          397
  N1                         70                          280
  N2                         25                           92
  N3                         14                           61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D15V6, binary
                              cls
clus                             0   1
  AMP PEAK 15(11P13) MUTATED   185   6
  AMP PEAK 15(11P13) WILD-TYPE 694  15
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 15(11P13) MUTATED    185    6
  AMP PEAK 15(11P13) WILD-TYPE  694   15
   clus
vv  AMP PEAK 15(11P13) MUTATED AMP PEAK 15(11P13) WILD-TYPE
  0                        185                          694
  1                          6                           15
[1] 2 2
[1] FALSE
D15V7, binary
                              cls
clus                             0   1
  AMP PEAK 15(11P13) MUTATED   215   4
  AMP PEAK 15(11P13) WILD-TYPE 836   7
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 15(11P13) MUTATED    215    4
  AMP PEAK 15(11P13) WILD-TYPE  836    7
        clus
vv       AMP PEAK 15(11P13) MUTATED AMP PEAK 15(11P13) WILD-TYPE
  FEMALE                        215                          836
  MALE                            4                            7
[1] 2 2
[1] FALSE
                              vv
clus                           INFILTRATING CARCINOMA NOS
  AMP PEAK 15(11P13) MUTATED                            1
  AMP PEAK 15(11P13) WILD-TYPE                          0
                              vv
clus                           INFILTRATING DUCTAL CARCINOMA
  AMP PEAK 15(11P13) MUTATED                             184
  AMP PEAK 15(11P13) WILD-TYPE                           579
                              vv
clus                           INFILTRATING LOBULAR CARCINOMA
  AMP PEAK 15(11P13) MUTATED                               16
  AMP PEAK 15(11P13) WILD-TYPE                            176
                              vv
clus                           MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  AMP PEAK 15(11P13) MUTATED                     3                     1
  AMP PEAK 15(11P13) WILD-TYPE                   3                     3
                              vv
clus                           MIXED HISTOLOGY (PLEASE SPECIFY)
  AMP PEAK 15(11P13) MUTATED                                  2
  AMP PEAK 15(11P13) WILD-TYPE                               28
                              vv
clus                           MUCINOUS CARCINOMA OTHER  SPECIFY
  AMP PEAK 15(11P13) MUTATED                    2             10
  AMP PEAK 15(11P13) WILD-TYPE                 15             38
D15V8, multiclass
                                  clus
vv                                 AMP PEAK 15(11P13) MUTATED
  INFILTRATING CARCINOMA NOS                                1
  INFILTRATING DUCTAL CARCINOMA                           184
  INFILTRATING LOBULAR CARCINOMA                           16
  MEDULLARY CARCINOMA                                       3
  METAPLASTIC CARCINOMA                                     1
  MIXED HISTOLOGY (PLEASE SPECIFY)                          2
  MUCINOUS CARCINOMA                                        2
  OTHER  SPECIFY                                           10
                                  clus
vv                                 AMP PEAK 15(11P13) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                  0
  INFILTRATING DUCTAL CARCINOMA                             579
  INFILTRATING LOBULAR CARCINOMA                            176
  MEDULLARY CARCINOMA                                         3
  METAPLASTIC CARCINOMA                                       3
  MIXED HISTOLOGY (PLEASE SPECIFY)                           28
  MUCINOUS CARCINOMA                                         15
  OTHER  SPECIFY                                             38
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D15V9, binary
                              cls
clus                             0   1
  AMP PEAK 15(11P13) MUTATED    68 151
  AMP PEAK 15(11P13) WILD-TYPE 220 623
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 15(11P13) MUTATED     68  151
  AMP PEAK 15(11P13) WILD-TYPE  220  623
     clus
vv    AMP PEAK 15(11P13) MUTATED AMP PEAK 15(11P13) WILD-TYPE
  NO                          68                          220
  YES                        151                          623
[1] 2 2
[1] FALSE
D15V10, continuous
                              vv
clus                           AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK 15(11P13) MUTATED                                  1    10
  AMP PEAK 15(11P13) WILD-TYPE                                0    50
                              vv
clus                           BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 15(11P13) MUTATED                          34   152
  AMP PEAK 15(11P13) WILD-TYPE                       136   584
D15V11, multiclass
                                  clus
vv                                 AMP PEAK 15(11P13) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                          1
  ASIAN                                                    10
  BLACK OR AFRICAN AMERICAN                                34
  WHITE                                                   152
                                  clus
vv                                 AMP PEAK 15(11P13) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                            0
  ASIAN                                                      50
  BLACK OR AFRICAN AMERICAN                                 136
  WHITE                                                     584
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D15V12, binary
                              cls
clus                             0   1
  AMP PEAK 15(11P13) MUTATED     6 175
  AMP PEAK 15(11P13) WILD-TYPE  32 683
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 15(11P13) MUTATED      6  175
  AMP PEAK 15(11P13) WILD-TYPE   32  683
                        clus
vv                       AMP PEAK 15(11P13) MUTATED
  HISPANIC OR LATINO                              6
  NOT HISPANIC OR LATINO                        175
                        clus
vv                       AMP PEAK 15(11P13) WILD-TYPE
  HISPANIC OR LATINO                               32
  NOT HISPANIC OR LATINO                          683
[1] 2 2
[1] FALSE

Clustering(16) Variable = AMP PEAK 16(11Q13.3) MUTATION ANALYSIS
D16V1, survival
                                sevent
clus2                              0   1
  AMP PEAK 16(11Q13.3) MUTATED   329  55
  AMP PEAK 16(11Q13.3) WILD-TYPE 587  73
  AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE 
                           384                            660 
  AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE 
                            55                             73 
$`AMP PEAK 16(11Q13.3) MUTATED`
TCGA-3C-AAAU TCGA-5T-A9QA TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SI TCGA-A1-A0SJ 
      129.14         9.96        14.37        43.43        20.88        13.68 
TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SQ TCGA-A2-A04P TCGA-A2-A04T 
       31.79         7.96        39.32        18.21        18.02        73.84 
TCGA-A2-A04U TCGA-A2-A04V TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CT TCGA-A2-A0CW 
       87.25        63.12       136.73        99.12        75.25       107.93 
TCGA-A2-A0D2 TCGA-A2-A0D4 TCGA-A2-A0EO TCGA-A2-A0EQ TCGA-A2-A0ER TCGA-A2-A0EU 
       33.76        25.22        80.28        79.76        74.40        34.29 
TCGA-A2-A0EW TCGA-A2-A0EY TCGA-A2-A0SW TCGA-A2-A0T1 TCGA-A2-A0T3 TCGA-A2-A0T4 
       61.94        63.29        44.88        17.13        49.84        20.52 
TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YE TCGA-A2-A0YF TCGA-A2-A0YI TCGA-A2-A0YJ 
       20.75        32.55        18.21        50.47        49.48        18.61 
TCGA-A2-A0YK TCGA-A2-A0YT TCGA-A2-A1FW TCGA-A2-A1FX TCGA-A2-A1G1 TCGA-A2-A1G4 
       19.33        23.77        17.36        60.72        19.20        19.56 
TCGA-A2-A25A TCGA-A2-A3KC TCGA-A2-A3KD TCGA-A2-A3XT TCGA-A2-A3Y0 TCGA-A7-A0CD 
      107.70        20.88        39.65        83.01        38.37        38.30 
TCGA-A7-A0CJ TCGA-A7-A0DA TCGA-A7-A0DC TCGA-A7-A26F TCGA-A7-A26G TCGA-A7-A26J 
       30.61        35.67        29.79        24.26        23.74        20.61 
TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A425 TCGA-A7-A4SB TCGA-A7-A4SE TCGA-A7-A5ZV 
       10.59        10.29        14.70        13.74        21.17        12.10 
TCGA-A7-A6VV TCGA-A7-A6VW TCGA-A8-A06O TCGA-A8-A06Q TCGA-A8-A06R TCGA-A8-A06U 
       10.29         9.37        13.02         1.02        17.98        29.03 
TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A079 TCGA-A8-A07B TCGA-A8-A07E TCGA-A8-A07F 
        1.02        17.03         9.01        43.00        19.99        18.97 
TCGA-A8-A07G TCGA-A8-A07R TCGA-A8-A07W TCGA-A8-A082 TCGA-A8-A085 TCGA-A8-A086 
       18.97         8.98         9.99        18.05        36.95        13.02 
TCGA-A8-A08B TCGA-A8-A08F TCGA-A8-A08G TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08P 
       38.01        33.01        19.96        12.00        37.05        31.00 
TCGA-A8-A08R TCGA-A8-A08S TCGA-A8-A091 TCGA-A8-A093 TCGA-A8-A097 TCGA-A8-A09A 
        0.99        33.01        33.01        17.95        12.00         9.99 
TCGA-A8-A09C TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09M TCGA-A8-A09Q TCGA-A8-A09W 
        1.02        49.05        45.07        33.07        25.02         0.99 
TCGA-A8-A0A1 TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A7 TCGA-A8-A0A9 TCGA-A8-A0AB 
       12.00        13.02        21.04         0.99        27.02        17.03 
TCGA-AC-A23H TCGA-AC-A2BM TCGA-AC-A2FM TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3W5 
        5.72        99.35        26.04        16.31        14.83        16.57 
TCGA-AC-A62V TCGA-AC-A62Y TCGA-AC-A6IX TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A049 
       11.44        17.42        12.26         0.33         0.33         0.62 
TCGA-AN-A04C TCGA-AN-A0AJ TCGA-AN-A0AL TCGA-AN-A0AS TCGA-AN-A0FK TCGA-AN-A0FS 
        1.78         9.96         6.51         0.33         7.00         6.28 
TCGA-AN-A0FW TCGA-AN-A0FY TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XW TCGA-AO-A03L 
        0.36         0.33         0.33         0.33         5.59        80.28 
TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A0J3 TCGA-AO-A0JD TCGA-AO-A0JE TCGA-AO-A0JG 
       81.63        95.70        21.40        72.00        76.77        26.24 
TCGA-AO-A0JM TCGA-AO-A126 TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12E TCGA-AO-A12F 
       71.80       108.72        90.58        98.27        57.30        48.36 
TCGA-AO-A12G TCGA-AO-A1KS TCGA-AO-A1KT TCGA-AQ-A04H TCGA-AQ-A04L TCGA-AQ-A1H2 
       41.62         0.53        17.79        24.79       130.09        15.62 
TCGA-AQ-A54O TCGA-AR-A0TV TCGA-AR-A0TW TCGA-AR-A0TZ TCGA-AR-A0U2 TCGA-AR-A0U3 
       32.91        42.35        98.93       107.24        83.87       114.02 
TCGA-AR-A0U4 TCGA-AR-A1AK TCGA-AR-A1AN TCGA-AR-A1AP TCGA-AR-A1AU TCGA-AR-A1AV 
       85.97        51.25        43.73        39.98        76.21        61.28 
TCGA-AR-A24K TCGA-AR-A24L TCGA-AR-A24R TCGA-AR-A24V TCGA-AR-A24Z TCGA-AR-A250 
       50.89        94.22        87.22        85.35        79.00        89.00 
TCGA-AR-A255 TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LL TCGA-AR-A2LR TCGA-B6-A0I2 
       58.92        62.86        54.21        66.15        20.38       143.38 
TCGA-B6-A0I9 TCGA-B6-A0IB TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0IO 
       12.13       129.57        65.72       146.50       112.37       110.14 
TCGA-B6-A0IP TCGA-B6-A0RE TCGA-B6-A0RL TCGA-B6-A0RS TCGA-B6-A0RV TCGA-B6-A0WV 
      110.93       211.56        81.17       100.70       157.41        79.63 
TCGA-B6-A0WW TCGA-B6-A0WY TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A1KI TCGA-B6-A408 
       18.35       113.79       129.70       186.48        73.51        68.12 
TCGA-B6-A40B TCGA-BH-A0AU TCGA-BH-A0AV TCGA-BH-A0AY TCGA-BH-A0B9 TCGA-BH-A0BC 
      103.63        24.53        59.84        25.55        51.68        32.02 
TCGA-BH-A0BD TCGA-BH-A0BF TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BR TCGA-BH-A0BT 
       18.21        25.71        24.85        21.70        53.69        45.57 
TCGA-BH-A0BV TCGA-BH-A0C3 TCGA-BH-A0DD TCGA-BH-A0DG TCGA-BH-A0DI TCGA-BH-A0DL 
       49.94        48.13        45.83        23.44        22.13        48.23 
TCGA-BH-A0DO TCGA-BH-A0DP TCGA-BH-A0DZ TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ 
       17.26        15.65        16.27        24.43        30.35        10.78 
TCGA-BH-A0H7 TCGA-BH-A0HK TCGA-BH-A0HU TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0W3 
       23.08         5.85        12.89        27.25        50.79        23.93 
TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18L TCGA-BH-A18M TCGA-BH-A18R TCGA-BH-A18T 
        7.23        20.12        26.66        72.56        37.55         7.36 
TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1EO TCGA-BH-A1ES TCGA-BH-A1EW TCGA-BH-A1F2 
       51.39        51.16        91.99       113.82        55.69        31.53 
TCGA-BH-A1F8 TCGA-BH-A1FC TCGA-BH-A1FN TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A203 
       24.66       114.15        72.07        28.14        26.14        38.60 
TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A28Q TCGA-BH-A42T TCGA-BH-AB28 TCGA-C8-A12L 
       57.83       130.16         6.44        10.52         9.44        11.93 
TCGA-C8-A12M TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12W TCGA-C8-A130 
       11.77        12.66        11.77        12.66        12.66         3.16 
TCGA-C8-A131 TCGA-C8-A132 TCGA-C8-A138 TCGA-C8-A1HG TCGA-C8-A1HK TCGA-C8-A1HL 
        2.24         1.87         4.08        11.34        12.03        10.42 
TCGA-C8-A1HM TCGA-C8-A26W TCGA-C8-A26Z TCGA-C8-A278 TCGA-C8-A3M8 TCGA-C8-A8HQ 
        2.30         0.23         8.28         9.50         0.23        12.49 
TCGA-D8-A13Y TCGA-D8-A140 TCGA-D8-A142 TCGA-D8-A1J9 TCGA-D8-A1JC TCGA-D8-A1JD 
       11.90        13.25        13.97        17.49        15.78        18.15 
TCGA-D8-A1JF TCGA-D8-A1JI TCGA-D8-A1X5 TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XF 
       12.03        18.97        18.58        25.74        23.90        15.22 
TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XQ TCGA-D8-A1XS TCGA-D8-A1XW TCGA-D8-A1XY 
       21.83        14.50        16.41        16.31        12.66        16.54 
TCGA-D8-A1Y0 TCGA-D8-A1Y2 TCGA-D8-A1Y3 TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27N 
       15.52        14.24        14.14        13.45        13.05         4.80 
TCGA-D8-A27R TCGA-D8-A27W TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A109 TCGA-E2-A10E 
       10.09        12.26        43.00        34.42        46.59        28.44 
TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14S TCGA-E2-A14V TCGA-E2-A14X TCGA-E2-A150 
       44.68        40.96        33.17        34.26        31.96        25.41 
TCGA-E2-A152 TCGA-E2-A154 TCGA-E2-A15A TCGA-E2-A15E TCGA-E2-A15K TCGA-E2-A15M 
       27.12        19.43        23.34        20.71         9.04        11.05 
TCGA-E2-A15O TCGA-E2-A15R TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1IE 
       13.02        17.06        14.99        60.53        53.62        38.30 
TCGA-E2-A1IG TCGA-E2-A1II TCGA-E2-A1IU TCGA-E2-A1LA TCGA-E2-A1LH TCGA-E2-A1LK 
       32.78        33.70        11.08        24.59       106.75         8.75 
TCGA-E2-A2P6 TCGA-E2-A56Z TCGA-E2-A574 TCGA-E2-A576 TCGA-E2-A9RU TCGA-E9-A1N5 
        5.52         8.28        26.56        34.29        12.85        36.82 
TCGA-E9-A1N8 TCGA-E9-A1N9 TCGA-E9-A1NA TCGA-E9-A1QZ TCGA-E9-A1R6 TCGA-E9-A1RB 
       12.00        13.12        36.56        11.90         2.76        32.09 
TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A228 TCGA-E9-A22D TCGA-E9-A244 TCGA-E9-A247 
       34.65         6.58        12.53        41.03         0.69        27.22 
TCGA-E9-A249 TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A3QA TCGA-E9-A5FL TCGA-EW-A1IW 
        7.13         0.72        29.72        30.18         0.79        12.20 
TCGA-EW-A1J1 TCGA-EW-A1J3 TCGA-EW-A1J5 TCGA-EW-A1J6 TCGA-EW-A1OX TCGA-EW-A1P5 
       18.90        16.57        15.68        28.77        29.95        23.11 
TCGA-EW-A1P8 TCGA-EW-A1PA TCGA-EW-A1PB TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FW 
        7.86        18.90        19.99        55.00        52.73        22.09 
TCGA-EW-A423 TCGA-GI-A2C8 TCGA-GM-A2D9 TCGA-GM-A2DB TCGA-GM-A2DF TCGA-GM-A2DH 
       10.16         7.40        59.57        79.10        70.85        72.10 
TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DO TCGA-GM-A3NW TCGA-GM-A3XL TCGA-HN-A2NL 
       86.96       115.69        85.35       110.50        69.30         2.60 
TCGA-LD-A7W6 TCGA-LL-A440 TCGA-LL-A6FQ TCGA-LL-A7SZ TCGA-LL-A7T0 TCGA-OL-A5D7 
       13.28        24.95         2.63        14.70        12.36        58.52 
TCGA-OL-A5DA TCGA-OL-A5RW TCGA-OL-A5RZ TCGA-OL-A66J TCGA-OL-A66O TCGA-PE-A5DC 
       58.62        36.36        22.32        65.62        17.36        47.01 
TCGA-PL-A8LX TCGA-PL-A8LZ TCGA-S3-A6ZF TCGA-S3-A6ZG TCGA-S3-A6ZH TCGA-S3-AA17 
        0.16         9.93        16.50        13.12        16.93        13.94 
TCGA-UL-AAZ6 TCGA-UU-A93S TCGA-WT-AB41 TCGA-XX-A899 TCGA-XX-A89A TCGA-Z7-A8R6 
       17.03         3.81        52.96        15.35        16.04       107.05 

$`AMP PEAK 16(11Q13.3) WILD-TYPE`
TCGA-3C-AALI TCGA-3C-AALJ TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT0 TCGA-5L-AAT1 
      131.67        42.81        40.14        11.44        48.56        48.36 
TCGA-A1-A0SB TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SO TCGA-A1-A0SP 
        8.52        48.10        14.27        47.24        28.01        19.20 
TCGA-A2-A04N TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04W TCGA-A2-A04X TCGA-A2-A04Y 
      104.81        78.41       121.94       101.98        55.43        36.13 
TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CQ TCGA-A2-A0CR TCGA-A2-A0CS 
       24.79       114.81        92.48        88.60       107.93        75.55 
TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CX TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D3 
        5.19        98.99        56.81        67.33        34.55        61.58 
TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EP TCGA-A2-A0ES TCGA-A2-A0ET TCGA-A2-A0EV 
      101.72       134.40       107.61        72.00        35.05        31.82 
TCGA-A2-A0EX TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SX TCGA-A2-A0SY 
       24.72        99.19        54.64        27.12        50.43        44.28 
TCGA-A2-A0T0 TCGA-A2-A0T2 TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0YD TCGA-A2-A0YG 
       17.52         8.38        17.46        18.90        25.28        21.90 
TCGA-A2-A0YH TCGA-A2-A0YL TCGA-A2-A0YM TCGA-A2-A1FV TCGA-A2-A1FZ TCGA-A2-A1G0 
       21.67        48.46        31.73        23.47        22.45        20.25 
TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25B TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25E 
       16.47        52.47        42.44        17.19        18.15       105.34 
TCGA-A2-A25F TCGA-A2-A3XS TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX 
       10.59        33.93        29.98        32.75        49.48        47.31 
TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 
       34.98        50.37         7.30        24.39        21.30        23.21 
TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CE TCGA-A7-A0CG TCGA-A7-A0CH 
       26.96        21.14        21.90        35.31        34.29        35.47 
TCGA-A7-A0D9 TCGA-A7-A0DB TCGA-A7-A13D TCGA-A7-A13E TCGA-A7-A13F TCGA-A7-A13G 
       37.45        33.11        31.73        20.19        25.15        23.61 
TCGA-A7-A13H TCGA-A7-A26E TCGA-A7-A26H TCGA-A7-A26I TCGA-A7-A2KD TCGA-A7-A3IY 
       29.56        31.36        23.80        21.73        22.32        11.34 
TCGA-A7-A3J1 TCGA-A7-A3RF TCGA-A7-A426 TCGA-A7-A4SA TCGA-A7-A4SD TCGA-A7-A4SF 
       11.28        13.41        11.97        14.93        14.50        17.92 
TCGA-A7-A56D TCGA-A7-A5ZW TCGA-A7-A5ZX TCGA-A7-A6VX TCGA-A7-A6VY TCGA-A8-A06P 
       14.73        10.72        11.05        10.42         8.75        13.02 
TCGA-A8-A06T TCGA-A8-A06X TCGA-A8-A06Y TCGA-A8-A076 TCGA-A8-A07I TCGA-A8-A07J 
       53.06        31.00        26.01        53.98        14.01        12.00 
TCGA-A8-A07L TCGA-A8-A07O TCGA-A8-A07P TCGA-A8-A07S TCGA-A8-A07U TCGA-A8-A07Z 
       32.05         9.99        10.98         7.99        24.99        45.07 
TCGA-A8-A084 TCGA-A8-A08A TCGA-A8-A08C TCGA-A8-A08L TCGA-A8-A08O TCGA-A8-A08T 
       15.06         0.99        28.96         9.99        31.00       112.08 
TCGA-A8-A08X TCGA-A8-A08Z TCGA-A8-A092 TCGA-A8-A095 TCGA-A8-A099 TCGA-A8-A09B 
       43.00        40.01        30.97        41.98         9.99        12.00 
TCGA-A8-A09D TCGA-A8-A09K TCGA-A8-A09N TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09V 
       50.04        29.98         1.02         8.98        19.04        15.02 
TCGA-A8-A09X TCGA-A8-A0A2 TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23E TCGA-AC-A23G 
       14.01        19.04        38.04         0.95         2.37        10.85 
TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2FB TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK 
        1.48        38.53        40.57        55.43        36.99        38.79 
TCGA-AC-A2FO TCGA-AC-A2QH TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3QP 
       50.70        33.04         0.92         2.27        32.45        22.19 
TCGA-AC-A3TN TCGA-AC-A3W6 TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A5XS TCGA-AC-A62X 
       14.99        19.79        23.24        24.79         1.55        13.71 
TCGA-AC-A6IV TCGA-AC-A6IW TCGA-AC-A6NO TCGA-AC-A7VB TCGA-AC-A7VC TCGA-AC-A8OP 
       18.67        13.58         1.68         8.22         0.03        20.19 
TCGA-AC-A8OQ TCGA-AC-A8OR TCGA-AC-A8OS TCGA-AN-A041 TCGA-AN-A046 TCGA-AN-A04A 
        1.12         1.32         2.30         0.23         0.33         2.96 
TCGA-AN-A04D TCGA-AN-A0AK TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0AT TCGA-AN-A0FD 
        1.71         7.36         0.16         0.33         0.33         6.44 
TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FL TCGA-AN-A0FN TCGA-AN-A0FT TCGA-AN-A0FV 
        5.65         7.96         7.59         7.17         7.04         0.33 
TCGA-AN-A0FX TCGA-AN-A0FZ TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS 
        0.33         0.33        12.33         0.30         0.33         0.33 
TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AN-A0XV TCGA-AO-A03M TCGA-AO-A03N TCGA-AO-A03R 
        0.33         0.33         5.33        61.35        66.77        68.75 
TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J2 TCGA-AO-A0J4 TCGA-AO-A0J5 
       47.87        58.95        29.13        32.78        52.18        26.04 
TCGA-AO-A0J6 TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JB 
       37.48        20.32        22.36        53.03        21.53        50.70 
TCGA-AO-A0JC TCGA-AO-A0JF TCGA-AO-A0JI TCGA-AO-A0JJ TCGA-AO-A0JL TCGA-AO-A124 
       50.86        21.37        50.24        62.04        55.33       102.58 
TCGA-AO-A125 TCGA-AO-A128 TCGA-AO-A129 TCGA-AO-A12D TCGA-AO-A12H TCGA-AO-A1KO 
       99.25       106.78       108.03        64.04        28.37        14.73 
TCGA-AO-A1KP TCGA-AO-A1KQ TCGA-AO-A1KR TCGA-AQ-A04J TCGA-AQ-A0Y5 TCGA-AQ-A1H3 
       82.62        61.87        70.39        26.93         5.65        32.52 
TCGA-AQ-A54N TCGA-AQ-A7U7 TCGA-AR-A0TP TCGA-AR-A0TQ TCGA-AR-A0TR TCGA-AR-A0TS 
        2.56        19.20       111.32        73.64         5.26        74.79 
TCGA-AR-A0TT TCGA-AR-A0TX TCGA-AR-A0TY TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A1AH 
       86.66        64.83        55.86        65.36       101.95        75.55 
TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AL TCGA-AR-A1AM TCGA-AR-A1AO TCGA-AR-A1AQ 
       61.84        52.77        48.82        76.11        43.56        43.07 
TCGA-AR-A1AR TCGA-AR-A1AS TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24H 
       17.23        37.81        63.62        62.14        33.73       160.90 
TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24Q TCGA-AR-A24S 
       96.89        78.51        84.20         2.76       104.28        97.84 
TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A251 TCGA-AR-A252 
       76.01        53.36        50.96        83.77        78.48        73.18 
TCGA-AR-A254 TCGA-AR-A256 TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LM TCGA-AR-A2LN 
       72.76        93.83       143.21        20.25        52.11        38.17 
TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A5QM TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ 
       39.39        40.54        54.74        16.04        20.45        10.59 
TCGA-B6-A0I1 TCGA-B6-A0I5 TCGA-B6-A0IA TCGA-B6-A0IC TCGA-B6-A0IJ TCGA-B6-A0IK 
       77.62       149.59       220.90        50.70       176.98        18.77 
TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IQ TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RI 
      126.12        84.59       140.88        68.45       189.01       234.28 
TCGA-B6-A0RM TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RT 
       78.02       172.96       162.05       102.77       140.48        89.46 
TCGA-B6-A0RU TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WX TCGA-B6-A0WZ TCGA-B6-A0X4 
      131.21        97.48       188.68        21.47       129.57        28.27 
TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A1KN TCGA-B6-A2IU 
       68.94        58.88        43.59       101.52       139.17       170.17 
TCGA-B6-A401 TCGA-B6-A402 TCGA-B6-A40C TCGA-BH-A0AW TCGA-BH-A0AZ TCGA-BH-A0B0 
       85.35        74.99        71.15        20.45        28.50        46.95 
TCGA-BH-A0B2 TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0B6 TCGA-BH-A0B7 
       40.83        39.55        39.16        48.36        56.94        56.98 
TCGA-BH-A0BA TCGA-BH-A0BL TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BP TCGA-BH-A0BQ 
       37.22        44.05        61.68        35.67        48.69        27.19 
TCGA-BH-A0BS TCGA-BH-A0BW TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0C7 
       53.95        11.67        49.05        41.75        44.02        42.90 
TCGA-BH-A0DE TCGA-BH-A0DH TCGA-BH-A0DK TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DT 
       31.17        38.01        13.91         3.22         2.56        38.47 
TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E6 
       67.86        47.41         4.41        15.68        14.30         9.63 
TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EA TCGA-BH-A0EB TCGA-BH-A0EE TCGA-BH-A0H0 
       44.81        46.19        32.58        24.49        31.00        15.16 
TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0HB 
       37.78        35.51        24.56        41.00        52.96        26.50 
TCGA-BH-A0HI TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HW TCGA-BH-A0RX 
       20.38         2.50        13.61        36.85        51.32         5.59 
TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A0WA TCGA-BH-A18F TCGA-BH-A18G 
       24.95        42.35        44.81        23.05         8.81         2.01 
TCGA-BH-A18K TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18S TCGA-BH-A1EN 
       90.84        37.74        30.28        55.63        66.05        69.93 
TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EX TCGA-BH-A1EY TCGA-BH-A1F0 
       82.85        42.28        12.00        49.58        17.69        25.81 
TCGA-BH-A1F5 TCGA-BH-A1F6 TCGA-BH-A1FB TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FG 
       89.16        97.48       120.62        33.17        74.73       122.89 
TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FM TCGA-BH-A1FR TCGA-BH-A1FU 
       36.92        63.35        55.00        45.63       144.59        72.07 
TCGA-BH-A204 TCGA-BH-A28O TCGA-BH-A2L8 TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5IZ 
       83.31        10.65        20.12       109.28         8.94        18.64 
TCGA-BH-A5J0 TCGA-BH-A6R8 TCGA-BH-A6R9 TCGA-BH-A8FY TCGA-BH-A8FZ TCGA-BH-A8G0 
       23.51         9.63         5.26         9.70        18.87        21.76 
TCGA-C8-A12N TCGA-C8-A12U TCGA-C8-A12V TCGA-C8-A12X TCGA-C8-A12Z TCGA-C8-A134 
       11.77        12.66        12.66        12.66         0.39         1.12 
TCGA-C8-A135 TCGA-C8-A137 TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HI TCGA-C8-A1HJ 
        1.05         4.11        12.33        10.92        11.28         0.16 
TCGA-C8-A1HN TCGA-C8-A26V TCGA-C8-A26X TCGA-C8-A26Y TCGA-C8-A273 TCGA-C8-A274 
        3.25         0.30         0.36         0.43         9.67         9.53 
TCGA-C8-A275 TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A8HP TCGA-C8-A8HR 
        0.03        12.20         0.99         0.03        13.02        13.41 
TCGA-C8-A9FZ TCGA-D8-A13Z TCGA-D8-A141 TCGA-D8-A143 TCGA-D8-A145 TCGA-D8-A146 
       19.46        20.88        20.58        14.17        13.48        21.14 
TCGA-D8-A147 TCGA-D8-A1J8 TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JE TCGA-D8-A1JG 
       19.20        14.17        16.50        18.71        18.90        12.03 
TCGA-D8-A1JH TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JN 
       14.01        20.09        20.12        20.09        19.40        20.38 
TCGA-D8-A1JP TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X6 TCGA-D8-A1X7 
       21.01        12.20        13.32        14.70        17.79        16.73 
TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XD TCGA-D8-A1XG TCGA-D8-A1XL 
       27.58        18.15        12.39        17.16        14.73        19.92 
TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XR TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1XV 
       17.69        15.55        15.85         6.35        12.99        15.16 
TCGA-D8-A1XZ TCGA-D8-A1Y1 TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27I TCGA-D8-A27K 
       15.32         9.93        17.42        16.04        14.43         9.44 
TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27P TCGA-D8-A27T TCGA-D8-A27V TCGA-D8-A3Z5 
       16.41        13.48         0.76        13.08        12.53        33.37 
TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-D8-A73U TCGA-D8-A73W TCGA-D8-A73X TCGA-E2-A108 
       18.51        21.67        16.18         8.02        12.10        27.52 
TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10C TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14Q 
       40.41        37.51        40.11        28.87        47.15        38.24 
TCGA-E2-A14R TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14W TCGA-E2-A14Y TCGA-E2-A14Z 
       38.60        33.30        43.33        32.02        28.60        18.51 
TCGA-E2-A153 TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A158 TCGA-E2-A159 TCGA-E2-A15C 
       23.24        21.04        23.87        14.79        25.05        22.82 
TCGA-E2-A15D TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15I TCGA-E2-A15J 
       17.29        21.63        18.21        12.92        17.42        19.40 
TCGA-E2-A15L TCGA-E2-A15P TCGA-E2-A15S TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 
       20.58        19.56        14.07        53.03        33.01        32.35 
TCGA-E2-A1B6 TCGA-E2-A1BC TCGA-E2-A1BD TCGA-E2-A1IF TCGA-E2-A1IH TCGA-E2-A1IJ 
       28.50        16.47        17.10        37.41        33.73        28.44 
TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IO TCGA-E2-A1L6 TCGA-E2-A1L7 
       22.65         3.88        22.19        20.98        54.18        27.42 
TCGA-E2-A1L8 TCGA-E2-A1L9 TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LG TCGA-E2-A1LI 
       39.62        19.66        40.47        28.90        18.87       102.61 
TCGA-E2-A1LL TCGA-E2-A2P5 TCGA-E2-A3DX TCGA-E2-A570 TCGA-E2-A573 TCGA-E9-A1N3 
       43.04        16.93        15.72        30.61        34.92        34.82 
TCGA-E9-A1N4 TCGA-E9-A1N6 TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NF 
       32.88        13.48        39.55        12.59        35.77        35.24 
TCGA-E9-A1NG TCGA-E9-A1NI TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R4 
       25.84         9.86        28.27        34.95         2.56         6.12 
TCGA-E9-A1R5 TCGA-E9-A1R7 TCGA-E9-A1RA TCGA-E9-A1RC TCGA-E9-A1RD TCGA-E9-A1RG 
        3.02        21.21        32.09        40.24         1.12        21.27 
TCGA-E9-A1RH TCGA-E9-A1RI TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A229 TCGA-E9-A22A 
       34.59        35.64        34.13        32.05        13.32        39.09 
TCGA-E9-A22B TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A248 
       22.75        12.89        23.51        20.71        17.06         1.94 
TCGA-E9-A24A TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3X8 TCGA-E9-A54X 
       24.56         0.76        26.07        18.41        15.72        12.33 
TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5UO TCGA-E9-A5UP TCGA-E9-A6HE TCGA-EW-A1IX 
       23.84        14.70        13.81        14.40        15.39        39.72 
TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J2 TCGA-EW-A1OV TCGA-EW-A1OW TCGA-EW-A1OY 
        8.48        18.21        13.25        25.94        22.82        29.85 
TCGA-EW-A1OZ TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P3 TCGA-EW-A1P4 TCGA-EW-A1P6 
       40.41        41.13        39.78        52.96        29.82        18.48 
TCGA-EW-A1P7 TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PF TCGA-EW-A1PG 
       30.08         6.15        13.94        10.52        14.43        34.55 
TCGA-EW-A1PH TCGA-EW-A2FV TCGA-EW-A3E8 TCGA-EW-A3U0 TCGA-EW-A424 TCGA-GI-A2C9 
       19.96        25.91        34.03        17.49        23.51       109.87 
TCGA-GM-A2DA TCGA-GM-A2DC TCGA-GM-A2DD TCGA-GM-A2DI TCGA-GM-A2DM TCGA-GM-A2DN 
      216.76        83.34        75.02        85.15       106.06       101.62 
TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX 
       38.20        43.73        66.38        72.03        13.55        18.12 
TCGA-HN-A2OB TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LD-A66U TCGA-LD-A74U TCGA-LD-A7W5 
       62.43        11.84        11.57        21.24        13.22         7.10 
TCGA-LD-A9QF TCGA-LL-A441 TCGA-LL-A442 TCGA-LL-A50Y TCGA-LL-A5YL TCGA-LL-A5YM 
       10.62        11.44        10.95        25.05        17.06        15.32 
TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LL-A5YP TCGA-LL-A6FP TCGA-LL-A6FR TCGA-LL-A73Y 
       14.70        14.47        14.79        22.26        16.08        15.68 
TCGA-LL-A73Z TCGA-LL-A740 TCGA-LL-A8F5 TCGA-LL-A9Q3 TCGA-LQ-A4E4 TCGA-MS-A51U 
        7.46        14.50        14.73        14.07        27.91        22.39 
TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5D8 TCGA-OL-A5RU TCGA-OL-A5RV TCGA-OL-A5RX 
        2.10        36.30        31.99        40.08        34.92        28.87 
TCGA-OL-A5RY TCGA-OL-A5S0 TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66K TCGA-OL-A66L 
       24.72        20.38        26.70        23.47        41.92        42.77 
TCGA-OL-A66N TCGA-OL-A66P TCGA-OL-A6VO TCGA-OL-A6VQ TCGA-OL-A6VR TCGA-OL-A97C 
       26.04        14.07        28.21        19.73        40.11         8.91 
TCGA-PE-A5DD TCGA-PE-A5DE TCGA-PL-A8LY TCGA-S3-AA0Z TCGA-S3-AA10 TCGA-S3-AA11 
       64.21        86.96         0.26        16.80        15.39        13.84 
TCGA-S3-AA12 TCGA-S3-AA14 TCGA-S3-AA15 TCGA-W8-A86G TCGA-WT-AB44 TCGA-Z7-A8R5 
       15.35        14.96        13.84        11.41        29.03       108.07 

  AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE 
                          0.16                           0.03 
  AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE 
                        211.56                         234.28 
  AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE 
                        23.755                         24.870 
[1] "0.2 - 211.6 (23.8)" "0.0 - 234.3 (24.9)"
[1] "hr=" "1.3"
D16V2, continuous
                                vv
clus                             STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  AMP PEAK 16(11Q13.3) MUTATED        32       20        4        1       133
  AMP PEAK 16(11Q13.3) WILD-TYPE      57       61        4        2       220
                                vv
clus                             STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  AMP PEAK 16(11Q13.3) MUTATED          88         1         58         14
  AMP PEAK 16(11Q13.3) WILD-TYPE       157         1         92         15
                                vv
clus                             STAGE IIIC STAGE IV STAGE TIS STAGE X
  AMP PEAK 16(11Q13.3) MUTATED           22       10         1       6
  AMP PEAK 16(11Q13.3) WILD-TYPE         41       10         0       7
D16V3, multiclass
            clus
vv           AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE
  STAGE I                              32                             57
  STAGE IA                             20                             61
  STAGE IB                              4                              4
  STAGE II                              1                              2
  STAGE IIA                           133                            220
  STAGE IIB                            88                            157
  STAGE III                             1                              1
  STAGE IIIA                           58                             92
  STAGE IIIB                           14                             15
  STAGE IIIC                           22                             41
  STAGE IV                             10                             10
  STAGE TIS                             1                              0
  STAGE X                               6                              7
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              T1  T2  T3  T4
  AMP PEAK 16(11Q13.3) MUTATED    85 241  42  19
  AMP PEAK 16(11Q13.3) WILD-TYPE 187 375  88  21
D16V4, multiclass
    clus
vv   AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE
  T1                           85                            187
  T2                          241                            375
  T3                           42                             88
  T4                           19                             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              N0  N1  N2  N3
  AMP PEAK 16(11Q13.3) MUTATED   177 128  50  28
  AMP PEAK 16(11Q13.3) WILD-TYPE 324 222  67  47
D16V5, multiclass
    clus
vv   AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE
  N0                          177                            324
  N1                          128                            222
  N2                           50                             67
  N3                           28                             47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D16V6, binary
                                cls
clus                               0   1
  AMP PEAK 16(11Q13.3) MUTATED   327  11
  AMP PEAK 16(11Q13.3) WILD-TYPE 552  10
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 16(11Q13.3) MUTATED    327   11
  AMP PEAK 16(11Q13.3) WILD-TYPE  552   10
   clus
vv  AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE
  0                          327                            552
  1                           11                             10
[1] 2 2
[1] FALSE
D16V7, binary
                                cls
clus                               0   1
  AMP PEAK 16(11Q13.3) MUTATED   383   7
  AMP PEAK 16(11Q13.3) WILD-TYPE 668   4
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 16(11Q13.3) MUTATED    383    7
  AMP PEAK 16(11Q13.3) WILD-TYPE  668    4
        clus
vv       AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE
  FEMALE                          383                            668
  MALE                              7                              4
[1] 2 2
[1] FALSE
                                vv
clus                             INFILTRATING CARCINOMA NOS
  AMP PEAK 16(11Q13.3) MUTATED                            1
  AMP PEAK 16(11Q13.3) WILD-TYPE                          0
                                vv
clus                             INFILTRATING DUCTAL CARCINOMA
  AMP PEAK 16(11Q13.3) MUTATED                             297
  AMP PEAK 16(11Q13.3) WILD-TYPE                           466
                                vv
clus                             INFILTRATING LOBULAR CARCINOMA
  AMP PEAK 16(11Q13.3) MUTATED                               58
  AMP PEAK 16(11Q13.3) WILD-TYPE                            134
                                vv
clus                             MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  AMP PEAK 16(11Q13.3) MUTATED                     3                     1
  AMP PEAK 16(11Q13.3) WILD-TYPE                   3                     3
                                vv
clus                             MIXED HISTOLOGY (PLEASE SPECIFY)
  AMP PEAK 16(11Q13.3) MUTATED                                  9
  AMP PEAK 16(11Q13.3) WILD-TYPE                               21
                                vv
clus                             MUCINOUS CARCINOMA OTHER  SPECIFY
  AMP PEAK 16(11Q13.3) MUTATED                    5             16
  AMP PEAK 16(11Q13.3) WILD-TYPE                 12             32
D16V8, multiclass
                                  clus
vv                                 AMP PEAK 16(11Q13.3) MUTATED
  INFILTRATING CARCINOMA NOS                                  1
  INFILTRATING DUCTAL CARCINOMA                             297
  INFILTRATING LOBULAR CARCINOMA                             58
  MEDULLARY CARCINOMA                                         3
  METAPLASTIC CARCINOMA                                       1
  MIXED HISTOLOGY (PLEASE SPECIFY)                            9
  MUCINOUS CARCINOMA                                          5
  OTHER  SPECIFY                                             16
                                  clus
vv                                 AMP PEAK 16(11Q13.3) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                    0
  INFILTRATING DUCTAL CARCINOMA                               466
  INFILTRATING LOBULAR CARCINOMA                              134
  MEDULLARY CARCINOMA                                           3
  METAPLASTIC CARCINOMA                                         3
  MIXED HISTOLOGY (PLEASE SPECIFY)                             21
  MUCINOUS CARCINOMA                                           12
  OTHER  SPECIFY                                               32
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D16V9, binary
                                cls
clus                               0   1
  AMP PEAK 16(11Q13.3) MUTATED   109 281
  AMP PEAK 16(11Q13.3) WILD-TYPE 179 493
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 16(11Q13.3) MUTATED    109  281
  AMP PEAK 16(11Q13.3) WILD-TYPE  179  493
     clus
vv    AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE
  NO                           109                            179
  YES                          281                            493
[1] 2 2
[1] FALSE
D16V10, continuous
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK 16(11Q13.3) MUTATED                                  1    25
  AMP PEAK 16(11Q13.3) WILD-TYPE                                0    35
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 16(11Q13.3) MUTATED                          61   256
  AMP PEAK 16(11Q13.3) WILD-TYPE                       109   480
D16V11, multiclass
                                  clus
vv                                 AMP PEAK 16(11Q13.3) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            1
  ASIAN                                                      25
  BLACK OR AFRICAN AMERICAN                                  61
  WHITE                                                     256
                                  clus
vv                                 AMP PEAK 16(11Q13.3) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              0
  ASIAN                                                        35
  BLACK OR AFRICAN AMERICAN                                   109
  WHITE                                                       480
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D16V12, binary
                                cls
clus                               0   1
  AMP PEAK 16(11Q13.3) MUTATED    15 307
  AMP PEAK 16(11Q13.3) WILD-TYPE  23 551
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 16(11Q13.3) MUTATED     15  307
  AMP PEAK 16(11Q13.3) WILD-TYPE   23  551
                        clus
vv                       AMP PEAK 16(11Q13.3) MUTATED
  HISPANIC OR LATINO                               15
  NOT HISPANIC OR LATINO                          307
                        clus
vv                       AMP PEAK 16(11Q13.3) WILD-TYPE
  HISPANIC OR LATINO                                 23
  NOT HISPANIC OR LATINO                            551
[1] 2 2
[1] FALSE

Clustering(17) Variable = AMP PEAK 17(11Q14.1) MUTATION ANALYSIS
D17V1, survival
                                sevent
clus2                              0   1
  AMP PEAK 17(11Q14.1) MUTATED   222  37
  AMP PEAK 17(11Q14.1) WILD-TYPE 694  91
  AMP PEAK 17(11Q14.1) MUTATED AMP PEAK 17(11Q14.1) WILD-TYPE 
                           259                            785 
  AMP PEAK 17(11Q14.1) MUTATED AMP PEAK 17(11Q14.1) WILD-TYPE 
                            37                             91 
$`AMP PEAK 17(11Q14.1) MUTATED`
TCGA-3C-AAAU TCGA-5T-A9QA TCGA-A1-A0SD TCGA-A1-A0SI TCGA-A1-A0SJ TCGA-A1-A0SK 
      129.14         9.96        14.37        20.88        13.68        31.79 
TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SO TCGA-A1-A0SP TCGA-A1-A0SQ TCGA-A2-A04T 
        7.96        39.32        28.01        19.20        18.21        73.84 
TCGA-A2-A04U TCGA-A2-A0CL TCGA-A2-A0CW TCGA-A2-A0D0 TCGA-A2-A0EO TCGA-A2-A0EQ 
       87.25        99.12       107.93        67.33        80.28        79.76 
TCGA-A2-A0ER TCGA-A2-A0ES TCGA-A2-A0EU TCGA-A2-A0EW TCGA-A2-A0EY TCGA-A2-A0ST 
       74.40        72.00        34.29        61.94        63.29        99.19 
TCGA-A2-A0SW TCGA-A2-A0T1 TCGA-A2-A0T4 TCGA-A2-A0YE TCGA-A2-A0YJ TCGA-A2-A1FX 
       44.88        17.13        20.52        18.21        18.61        60.72 
TCGA-A2-A1G1 TCGA-A2-A3KC TCGA-A2-A3KD TCGA-A2-A3XT TCGA-A2-A4RW TCGA-A2-A4S3 
       19.20        20.88        39.65        83.01         7.30        21.90 
TCGA-A7-A0CD TCGA-A7-A0CJ TCGA-A7-A0DA TCGA-A7-A0DC TCGA-A7-A13E TCGA-A7-A26F 
       38.30        30.61        35.67        29.79        20.19        24.26 
TCGA-A7-A26G TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A4SB TCGA-A7-A4SF TCGA-A7-A5ZV 
       23.74        10.59        10.29        13.74        17.92        12.10 
TCGA-A7-A6VW TCGA-A8-A06Q TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A079 TCGA-A8-A07B 
        9.37         1.02         1.02        17.03         9.01        43.00 
TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07O TCGA-A8-A07R TCGA-A8-A086 
       18.97        18.97        14.01         9.99         8.98        13.02 
TCGA-A8-A08B TCGA-A8-A08F TCGA-A8-A08I TCGA-A8-A08R TCGA-A8-A09A TCGA-A8-A09C 
       38.01        33.01        12.00         0.99         9.99         1.02 
TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09M TCGA-A8-A09Q TCGA-A8-A09W TCGA-A8-A0A1 
       49.05        45.07        33.07        25.02         0.99        12.00 
TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A7 TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-AC-A3OD 
       13.02        21.04         0.99        27.02        17.03        14.83 
TCGA-AC-A3W5 TCGA-AC-A62V TCGA-AC-A62Y TCGA-AC-A6IX TCGA-AC-A7VB TCGA-AN-A03X 
       16.57        11.44        17.42        12.26         8.22         0.33 
TCGA-AN-A03Y TCGA-AN-A049 TCGA-AN-A04C TCGA-AN-A0AL TCGA-AN-A0AR TCGA-AN-A0AS 
        0.33         0.62         1.78         6.51         0.33         0.33 
TCGA-AN-A0AT TCGA-AN-A0FK TCGA-AN-A0FV TCGA-AN-A0FX TCGA-AN-A0FY TCGA-AN-A0FZ 
        0.33         7.00         0.33         0.33         0.33         0.33 
TCGA-AN-A0XN TCGA-AN-A0XU TCGA-AN-A0XW TCGA-AO-A0J6 TCGA-AO-A0JE TCGA-AO-A0JG 
        0.33         0.33         5.59        37.48        76.77        26.24 
TCGA-AO-A126 TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12G TCGA-AO-A1KT TCGA-AQ-A04L 
      108.72        90.58        98.27        41.62        17.79       130.09 
TCGA-AQ-A1H2 TCGA-AQ-A54O TCGA-AR-A0TT TCGA-AR-A0TV TCGA-AR-A0TW TCGA-AR-A0U2 
       15.62        32.91        86.66        42.35        98.93        83.87 
TCGA-AR-A1AP TCGA-AR-A1AU TCGA-AR-A24K TCGA-AR-A24R TCGA-AR-A24V TCGA-AR-A24Z 
       39.98        76.21        50.89        87.22        85.35        79.00 
TCGA-AR-A250 TCGA-AR-A2LJ TCGA-AR-A2LR TCGA-B6-A0I2 TCGA-B6-A0I9 TCGA-B6-A0IB 
       89.00        62.86        20.38       143.38        12.13       129.57 
TCGA-B6-A0IE TCGA-B6-A0IO TCGA-B6-A0RE TCGA-B6-A0RL TCGA-B6-A0RS TCGA-B6-A0WY 
       65.72       110.14       211.56        81.17       100.70       113.79 
TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A1KI TCGA-B6-A408 TCGA-B6-A40B TCGA-BH-A0AV 
      129.70       186.48        73.51        68.12       103.63        59.84 
TCGA-BH-A0AY TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BF TCGA-BH-A0BG TCGA-BH-A0BJ 
       25.55        32.02        18.21        25.71        24.85        21.70 
TCGA-BH-A0BR TCGA-BH-A0BT TCGA-BH-A0DD TCGA-BH-A0DG TCGA-BH-A0DI TCGA-BH-A0DO 
       53.69        45.57        45.83        23.44        22.13        17.26 
TCGA-BH-A0DP TCGA-BH-A0E0 TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H7 
       15.65         4.41        24.43        30.35        10.78        23.08 
TCGA-BH-A0HY TCGA-BH-A0W3 TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18M TCGA-BH-A18P 
       50.79        23.93         7.23        20.12        72.56        30.28 
TCGA-BH-A18R TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1EN TCGA-BH-A1EO 
       37.55         7.36        51.39        51.16        69.93        91.99 
TCGA-BH-A1F8 TCGA-BH-A1FC TCGA-BH-A1FN TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A203 
       24.66       114.15        72.07        28.14        26.14        38.60 
TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A28Q TCGA-BH-A5IZ TCGA-BH-A8FY TCGA-C8-A12L 
       57.83       130.16         6.44        18.64         9.70        11.93 
TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A278 TCGA-C8-A27A TCGA-D8-A13Y TCGA-D8-A140 
       11.77        12.66         9.50        12.20        11.90        13.25 
TCGA-D8-A142 TCGA-D8-A1J9 TCGA-D8-A1JC TCGA-D8-A1JF TCGA-D8-A1X5 TCGA-D8-A1X8 
       13.97        17.49        15.78        12.03        18.58        25.74 
TCGA-D8-A1XF TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XS TCGA-D8-A1XU TCGA-D8-A1XW 
       15.22        21.83        14.50        16.31        12.99        12.66 
TCGA-D8-A1XY TCGA-D8-A1Y0 TCGA-D8-A1Y3 TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27M 
       16.54        15.52        14.14        13.45        13.05        13.48 
TCGA-D8-A27R TCGA-E2-A10A TCGA-E2-A10E TCGA-E2-A14R TCGA-E2-A14S TCGA-E2-A14X 
       10.09        40.41        28.44        38.60        33.17        31.96 
TCGA-E2-A152 TCGA-E2-A155 TCGA-E2-A15A TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1IE 
       27.12        21.04        23.34        60.53        53.62        38.30 
TCGA-E2-A1II TCGA-E2-A1IU TCGA-E2-A1LK TCGA-E2-A2P6 TCGA-E2-A574 TCGA-E2-A9RU 
       33.70        11.08         8.75         5.52        26.56        12.85 
TCGA-E9-A1N8 TCGA-E9-A1NA TCGA-E9-A1QZ TCGA-E9-A1R6 TCGA-E9-A1RB TCGA-E9-A228 
       12.00        36.56        11.90         2.76        32.09        12.53 
TCGA-E9-A22G TCGA-E9-A244 TCGA-E9-A247 TCGA-E9-A249 TCGA-E9-A295 TCGA-E9-A2JS 
       23.51         0.69        27.22         7.13         0.72        29.72 
TCGA-E9-A5FL TCGA-EW-A1J6 TCGA-EW-A1P5 TCGA-EW-A1P8 TCGA-EW-A1PA TCGA-EW-A1PB 
        0.79        28.77        23.11         7.86        18.90        19.99 
TCGA-EW-A2FW TCGA-GM-A2D9 TCGA-GM-A2DB TCGA-GM-A2DH TCGA-GM-A3NW TCGA-GM-A3XL 
       22.09        59.57        79.10        72.10       110.50        69.30 
TCGA-HN-A2NL TCGA-LL-A441 TCGA-LL-A6FQ TCGA-LL-A73Y TCGA-OL-A5D7 TCGA-PE-A5DC 
        2.60        11.44         2.63        15.68        58.52        47.01 
TCGA-PL-A8LZ TCGA-S3-A6ZF TCGA-S3-AA17 TCGA-UL-AAZ6 TCGA-UU-A93S TCGA-WT-AB41 
        9.93        16.50        13.94        17.03         3.81        52.96 
TCGA-XX-A899 
       15.35 

$`AMP PEAK 17(11Q14.1) WILD-TYPE`
TCGA-3C-AALI TCGA-3C-AALJ TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT0 TCGA-5L-AAT1 
      131.67        42.81        40.14        11.44        48.56        48.36 
TCGA-A1-A0SB TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A2-A04N 
        8.52        43.43        48.10        14.27        47.24       104.81 
TCGA-A2-A04P TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04V TCGA-A2-A04W TCGA-A2-A04X 
       18.02        78.41       121.94        63.12       101.98        55.43 
TCGA-A2-A04Y TCGA-A2-A0CK TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CQ 
       36.13       136.73        24.79       114.81        92.48        88.60 
TCGA-A2-A0CR TCGA-A2-A0CS TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CX 
      107.93        75.55        75.25         5.19        98.99        56.81 
TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0D4 TCGA-A2-A0EM TCGA-A2-A0EN 
       34.55        33.76        61.58        25.22       101.72       134.40 
TCGA-A2-A0EP TCGA-A2-A0ET TCGA-A2-A0EV TCGA-A2-A0EX TCGA-A2-A0SU TCGA-A2-A0SV 
      107.61        35.05        31.82        24.72        54.64        27.12 
TCGA-A2-A0SX TCGA-A2-A0SY TCGA-A2-A0T0 TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T5 
       50.43        44.28        17.52         8.38        49.84        17.46 
TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YF TCGA-A2-A0YG 
       18.90        20.75        32.55        25.28        50.47        21.90 
TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A0YM TCGA-A2-A0YT 
       21.67        49.48        19.33        48.46        31.73        23.77 
TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G4 TCGA-A2-A1G6 
       23.47        17.36        22.45        20.25        19.56        16.47 
TCGA-A2-A259 TCGA-A2-A25A TCGA-A2-A25B TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25E 
       52.47       107.70        42.44        17.19        18.15       105.34 
TCGA-A2-A25F TCGA-A2-A3XS TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX 
       10.59        33.93        29.98        32.75        49.48        47.31 
TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A3Y0 TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 
       34.98        50.37        38.37        24.39        21.30        23.21 
TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A7-A0CE TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0D9 
       26.96        21.14        35.31        34.29        35.47        37.45 
TCGA-A7-A0DB TCGA-A7-A13D TCGA-A7-A13F TCGA-A7-A13G TCGA-A7-A13H TCGA-A7-A26E 
       33.11        31.73        25.15        23.61        29.56        31.36 
TCGA-A7-A26H TCGA-A7-A26I TCGA-A7-A26J TCGA-A7-A2KD TCGA-A7-A3IY TCGA-A7-A3J1 
       23.80        21.73        20.61        22.32        11.34        11.28 
TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A426 TCGA-A7-A4SA TCGA-A7-A4SD TCGA-A7-A4SE 
       13.41        14.70        11.97        14.93        14.50        21.17 
TCGA-A7-A56D TCGA-A7-A5ZW TCGA-A7-A5ZX TCGA-A7-A6VV TCGA-A7-A6VX TCGA-A7-A6VY 
       14.73        10.72        11.05        10.29        10.42         8.75 
TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06R TCGA-A8-A06T TCGA-A8-A06U TCGA-A8-A06X 
       13.02        13.02        17.98        53.06        29.03        31.00 
TCGA-A8-A06Y TCGA-A8-A076 TCGA-A8-A07E TCGA-A8-A07J TCGA-A8-A07L TCGA-A8-A07P 
       26.01        53.98        19.99        12.00        32.05        10.98 
TCGA-A8-A07S TCGA-A8-A07U TCGA-A8-A07W TCGA-A8-A07Z TCGA-A8-A082 TCGA-A8-A084 
        7.99        24.99         9.99        45.07        18.05        15.06 
TCGA-A8-A085 TCGA-A8-A08A TCGA-A8-A08C TCGA-A8-A08G TCGA-A8-A08J TCGA-A8-A08L 
       36.95         0.99        28.96        19.96        37.05         9.99 
TCGA-A8-A08O TCGA-A8-A08P TCGA-A8-A08S TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A08Z 
       31.00        31.00        33.01       112.08        43.00        40.01 
TCGA-A8-A091 TCGA-A8-A092 TCGA-A8-A093 TCGA-A8-A095 TCGA-A8-A097 TCGA-A8-A099 
       33.01        30.97        17.95        41.98        12.00         9.99 
TCGA-A8-A09B TCGA-A8-A09D TCGA-A8-A09K TCGA-A8-A09N TCGA-A8-A09R TCGA-A8-A09T 
       12.00        50.04        29.98         1.02         8.98        19.04 
TCGA-A8-A09V TCGA-A8-A09X TCGA-A8-A0A2 TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23E 
       15.02        14.01        19.04        38.04         0.95         2.37 
TCGA-AC-A23G TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FB 
       10.85         5.72         1.48        38.53        99.35        40.57 
TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A2QH 
       55.43        36.99        38.79        26.04        50.70        33.04 
TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3HN TCGA-AC-A3QP TCGA-AC-A3TN 
        0.92         2.27        32.45        16.31        22.19        14.99 
TCGA-AC-A3W6 TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A5XS TCGA-AC-A62X TCGA-AC-A6IV 
       19.79        23.24        24.79         1.55        13.71        18.67 
TCGA-AC-A6IW TCGA-AC-A6NO TCGA-AC-A7VC TCGA-AC-A8OP TCGA-AC-A8OQ TCGA-AC-A8OR 
       13.58         1.68         0.03        20.19         1.12         1.32 
TCGA-AC-A8OS TCGA-AN-A041 TCGA-AN-A046 TCGA-AN-A04A TCGA-AN-A04D TCGA-AN-A0AJ 
        2.30         0.23         0.33         2.96         1.71         9.96 
TCGA-AN-A0AK TCGA-AN-A0AM TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FL 
        7.36         0.16         6.44         5.65         7.96         7.59 
TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FW TCGA-AN-A0XL TCGA-AN-A0XO 
        7.17         6.28         7.04         0.36         0.33        12.33 
TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XV TCGA-AO-A03L 
        0.30         0.33         0.33         0.33         5.33        80.28 
TCGA-AO-A03M TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A03T 
       61.35        66.77        81.63        95.70        68.75        47.87 
TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J4 TCGA-AO-A0J5 
       58.95        29.13        32.78        21.40        52.18        26.04 
TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JC 
       20.32        22.36        53.03        21.53        50.70        50.86 
TCGA-AO-A0JD TCGA-AO-A0JF TCGA-AO-A0JI TCGA-AO-A0JJ TCGA-AO-A0JL TCGA-AO-A0JM 
       72.00        21.37        50.24        62.04        55.33        71.80 
TCGA-AO-A124 TCGA-AO-A125 TCGA-AO-A128 TCGA-AO-A129 TCGA-AO-A12D TCGA-AO-A12E 
      102.58        99.25       106.78       108.03        64.04        57.30 
TCGA-AO-A12F TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KQ TCGA-AO-A1KR 
       48.36        28.37        14.73        82.62        61.87        70.39 
TCGA-AO-A1KS TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A0Y5 TCGA-AQ-A1H3 TCGA-AQ-A54N 
        0.53        24.79        26.93         5.65        32.52         2.56 
TCGA-AQ-A7U7 TCGA-AR-A0TP TCGA-AR-A0TQ TCGA-AR-A0TR TCGA-AR-A0TS TCGA-AR-A0TX 
       19.20       111.32        73.64         5.26        74.79        64.83 
TCGA-AR-A0TY TCGA-AR-A0TZ TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A0U3 TCGA-AR-A0U4 
       55.86       107.24        65.36       101.95       114.02        85.97 
TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AM 
       75.55        61.84        52.77        51.25        48.82        76.11 
TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AQ TCGA-AR-A1AR TCGA-AR-A1AS TCGA-AR-A1AV 
       43.73        43.56        43.07        17.23        37.81        61.28 
TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24L TCGA-AR-A24M 
       63.62        62.14        33.73       160.90        94.22        96.89 
TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24Q TCGA-AR-A24S TCGA-AR-A24T 
       78.51        84.20         2.76       104.28        97.84        76.01 
TCGA-AR-A24U TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A251 TCGA-AR-A252 TCGA-AR-A254 
       53.36        50.96        83.77        78.48        73.18        72.76 
TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LK TCGA-AR-A2LL 
       58.92        93.83       143.21        20.25        54.21        66.15 
TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A5QM TCGA-AR-A5QN 
       52.11        38.17        39.39        40.54        54.74        16.04 
TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I5 TCGA-B6-A0IA TCGA-B6-A0IC 
       20.45        10.59        77.62       149.59       220.90        50.70 
TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN 
      146.50       112.37       176.98        18.77       126.12        84.59 
TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RM 
      110.93       140.88        68.45       189.01       234.28        78.02 
TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RU 
      172.96       162.05       102.77       140.48        89.46       131.21 
TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0WX 
      157.41        97.48       188.68        79.63        18.35        21.47 
TCGA-B6-A0WZ TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KC TCGA-B6-A1KF 
      129.57        28.27        68.94        58.88        43.59       101.52 
TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A401 TCGA-B6-A402 TCGA-B6-A40C TCGA-BH-A0AU 
      139.17       170.17        85.35        74.99        71.15        24.53 
TCGA-BH-A0AW TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B2 TCGA-BH-A0B3 TCGA-BH-A0B4 
       20.45        28.50        46.95        40.83        39.55        39.16 
TCGA-BH-A0B5 TCGA-BH-A0B6 TCGA-BH-A0B7 TCGA-BH-A0B9 TCGA-BH-A0BA TCGA-BH-A0BL 
       48.36        56.94        56.98        51.68        37.22        44.05 
TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BP TCGA-BH-A0BQ TCGA-BH-A0BS TCGA-BH-A0BV 
       61.68        35.67        48.69        27.19        53.95        49.94 
TCGA-BH-A0BW TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0C3 TCGA-BH-A0C7 
       11.67        49.05        41.75        44.02        48.13        42.90 
TCGA-BH-A0DE TCGA-BH-A0DH TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DQ TCGA-BH-A0DS 
       31.17        38.01        13.91        48.23         3.22         2.56 
TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E1 TCGA-BH-A0E2 
       38.47        67.86        47.41        16.27        15.68        14.30 
TCGA-BH-A0E6 TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EA TCGA-BH-A0EB TCGA-BH-A0EE 
        9.63        44.81        46.19        32.58        24.49        31.00 
TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H9 TCGA-BH-A0HA 
       15.16        37.78        35.51        24.56        41.00        52.96 
TCGA-BH-A0HB TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ 
       26.50        20.38         5.85         2.50        13.61        36.85 
TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0RX TCGA-BH-A0W4 TCGA-BH-A0W5 
       12.89        51.32        27.25         5.59        24.95        42.35 
TCGA-BH-A0W7 TCGA-BH-A0WA TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18K TCGA-BH-A18L 
       44.81        23.05         8.81         2.01        90.84        26.66 
TCGA-BH-A18N TCGA-BH-A18Q TCGA-BH-A18S TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EU 
       37.74        55.63        66.05       113.82        82.85        42.28 
TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1EX TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F2 
       12.00        55.69        49.58        17.69        25.81        31.53 
TCGA-BH-A1F5 TCGA-BH-A1F6 TCGA-BH-A1FB TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FG 
       89.16        97.48       120.62        33.17        74.73       122.89 
TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FM TCGA-BH-A1FR TCGA-BH-A1FU 
       36.92        63.35        55.00        45.63       144.59        72.07 
TCGA-BH-A204 TCGA-BH-A28O TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V 
       83.31        10.65        20.12        10.52       109.28         8.94 
TCGA-BH-A5J0 TCGA-BH-A6R8 TCGA-BH-A6R9 TCGA-BH-A8FZ TCGA-BH-A8G0 TCGA-BH-AB28 
       23.51         9.63         5.26        18.87        21.76         9.44 
TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12U TCGA-C8-A12V TCGA-C8-A12W 
       11.77        11.77        12.66        12.66        12.66        12.66 
TCGA-C8-A12X TCGA-C8-A12Z TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A132 TCGA-C8-A134 
       12.66         0.39         3.16         2.24         1.87         1.12 
TCGA-C8-A135 TCGA-C8-A137 TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HG 
        1.05         4.11         4.08        12.33        10.92        11.34 
TCGA-C8-A1HI TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HL TCGA-C8-A1HM TCGA-C8-A1HN 
       11.28         0.16        12.03        10.42         2.30         3.25 
TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A26X TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A273 
        0.30         0.23         0.36         0.43         8.28         9.67 
TCGA-C8-A274 TCGA-C8-A275 TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-C8-A8HP 
        9.53         0.03         0.99         0.03         0.23        13.02 
TCGA-C8-A8HQ TCGA-C8-A8HR TCGA-C8-A9FZ TCGA-D8-A13Z TCGA-D8-A141 TCGA-D8-A143 
       12.49        13.41        19.46        20.88        20.58        14.17 
TCGA-D8-A145 TCGA-D8-A146 TCGA-D8-A147 TCGA-D8-A1J8 TCGA-D8-A1JA TCGA-D8-A1JB 
       13.48        21.14        19.20        14.17        16.50        18.71 
TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JG TCGA-D8-A1JH TCGA-D8-A1JI TCGA-D8-A1JJ 
       18.15        18.90        12.03        14.01        18.97        20.09 
TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1JP TCGA-D8-A1JS 
       20.12        20.09        19.40        20.38        21.01        12.20 
TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X6 TCGA-D8-A1X7 TCGA-D8-A1X9 TCGA-D8-A1XA 
       13.32        14.70        17.79        16.73        23.90        27.58 
TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XD TCGA-D8-A1XG TCGA-D8-A1XL TCGA-D8-A1XM 
       18.15        12.39        17.16        14.73        19.92        17.69 
TCGA-D8-A1XO TCGA-D8-A1XQ TCGA-D8-A1XR TCGA-D8-A1XT TCGA-D8-A1XV TCGA-D8-A1XZ 
       15.55        16.41        15.85         6.35        15.16        15.32 
TCGA-D8-A1Y1 TCGA-D8-A1Y2 TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27I TCGA-D8-A27K 
        9.93        14.24        17.42        16.04        14.43         9.44 
TCGA-D8-A27L TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27T TCGA-D8-A27V TCGA-D8-A27W 
       16.41         4.80         0.76        13.08        12.53        12.26 
TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-D8-A73U TCGA-D8-A73W TCGA-D8-A73X 
       33.37        18.51        21.67        16.18         8.02        12.10 
TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10B TCGA-E2-A10C 
       43.00        34.42        27.52        46.59        37.51        40.11 
TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14Q TCGA-E2-A14T 
       28.87        47.15        44.68        40.96        38.24        33.30 
TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14W TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A150 
       43.33        34.26        32.02        28.60        18.51        25.41 
TCGA-E2-A153 TCGA-E2-A154 TCGA-E2-A156 TCGA-E2-A158 TCGA-E2-A159 TCGA-E2-A15C 
       23.24        19.43        23.87        14.79        25.05        22.82 
TCGA-E2-A15D TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15I 
       17.29        20.71        21.63        18.21        12.92        17.42 
TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15O TCGA-E2-A15P 
       19.40         9.04        20.58        11.05        13.02        19.56 
TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 
       17.06        14.07        14.99        53.03        33.01        32.35 
TCGA-E2-A1B6 TCGA-E2-A1BC TCGA-E2-A1BD TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1IH 
       28.50        16.47        17.10        37.41        32.78        33.73 
TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IO TCGA-E2-A1L6 
       28.44        22.65         3.88        22.19        20.98        54.18 
TCGA-E2-A1L7 TCGA-E2-A1L8 TCGA-E2-A1L9 TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LE 
       27.42        39.62        19.66        24.59        40.47        28.90 
TCGA-E2-A1LG TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LL TCGA-E2-A2P5 TCGA-E2-A3DX 
       18.87       106.75       102.61        43.04        16.93        15.72 
TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A573 TCGA-E2-A576 TCGA-E9-A1N3 TCGA-E9-A1N4 
        8.28        30.61        34.92        34.29        34.82        32.88 
TCGA-E9-A1N5 TCGA-E9-A1N6 TCGA-E9-A1N9 TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NE 
       36.82        13.48        13.12        39.55        12.59        35.77 
TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1NI TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R3 
       35.24        25.84         9.86        28.27        34.95         2.56 
TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R7 TCGA-E9-A1RA TCGA-E9-A1RC TCGA-E9-A1RD 
        6.12         3.02        21.21        32.09        40.24         1.12 
TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RG TCGA-E9-A1RH TCGA-E9-A1RI TCGA-E9-A226 
       34.65         6.58        21.27        34.59        35.64        34.13 
TCGA-E9-A227 TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A22D TCGA-E9-A22E 
       32.05        13.32        39.09        22.75        41.03        12.89 
TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A248 TCGA-E9-A24A TCGA-E9-A2JT TCGA-E9-A3HO 
       20.71        17.06         1.94        24.56         0.76        26.07 
TCGA-E9-A3Q9 TCGA-E9-A3QA TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A54Y TCGA-E9-A5FK 
       18.41        30.18        15.72        12.33        23.84        14.70 
TCGA-E9-A5UO TCGA-E9-A5UP TCGA-E9-A6HE TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY 
       13.81        14.40        15.39        12.20        39.72         8.48 
TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J5 TCGA-EW-A1OV 
       18.21        18.90        13.25        16.57        15.68        25.94 
TCGA-EW-A1OW TCGA-EW-A1OX TCGA-EW-A1OY TCGA-EW-A1OZ TCGA-EW-A1P0 TCGA-EW-A1P1 
       22.82        29.95        29.85        40.41        41.13        39.78 
TCGA-EW-A1P3 TCGA-EW-A1P4 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1PC TCGA-EW-A1PD 
       52.96        29.82        18.48        30.08         6.15        13.94 
TCGA-EW-A1PE TCGA-EW-A1PF TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FR TCGA-EW-A2FS 
       10.52        14.43        34.55        19.96        55.00        52.73 
TCGA-EW-A2FV TCGA-EW-A3E8 TCGA-EW-A3U0 TCGA-EW-A423 TCGA-EW-A424 TCGA-GI-A2C8 
       25.91        34.03        17.49        10.16        23.51         7.40 
TCGA-GI-A2C9 TCGA-GM-A2DA TCGA-GM-A2DC TCGA-GM-A2DD TCGA-GM-A2DF TCGA-GM-A2DI 
      109.87       216.76        83.34        75.02        70.85        85.15 
TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A2DO TCGA-GM-A3NY 
       86.96       115.69       106.06       101.62        85.35        38.20 
TCGA-GM-A3XG TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2OB 
       43.73        66.38        72.03        13.55        18.12        62.43 
TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LD-A66U TCGA-LD-A74U TCGA-LD-A7W5 TCGA-LD-A7W6 
       11.84        11.57        21.24        13.22         7.10        13.28 
TCGA-LD-A9QF TCGA-LL-A440 TCGA-LL-A442 TCGA-LL-A50Y TCGA-LL-A5YL TCGA-LL-A5YM 
       10.62        24.95        10.95        25.05        17.06        15.32 
TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LL-A5YP TCGA-LL-A6FP TCGA-LL-A6FR TCGA-LL-A73Z 
       14.70        14.47        14.79        22.26        16.08         7.46 
TCGA-LL-A740 TCGA-LL-A7SZ TCGA-LL-A7T0 TCGA-LL-A8F5 TCGA-LL-A9Q3 TCGA-LQ-A4E4 
       14.50        14.70        12.36        14.73        14.07        27.91 
TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RU 
       22.39         2.10        36.30        31.99        58.62        40.08 
TCGA-OL-A5RV TCGA-OL-A5RW TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A5S0 
       34.92        36.36        28.87        24.72        22.32        20.38 
TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66K TCGA-OL-A66L TCGA-OL-A66N 
       26.70        23.47        65.62        41.92        42.77        26.04 
TCGA-OL-A66O TCGA-OL-A66P TCGA-OL-A6VO TCGA-OL-A6VQ TCGA-OL-A6VR TCGA-OL-A97C 
       17.36        14.07        28.21        19.73        40.11         8.91 
TCGA-PE-A5DD TCGA-PE-A5DE TCGA-PL-A8LX TCGA-PL-A8LY TCGA-S3-A6ZG TCGA-S3-A6ZH 
       64.21        86.96         0.16         0.26        13.12        16.93 
TCGA-S3-AA0Z TCGA-S3-AA10 TCGA-S3-AA11 TCGA-S3-AA12 TCGA-S3-AA14 TCGA-S3-AA15 
       16.80        15.39        13.84        15.35        14.96        13.84 
TCGA-W8-A86G TCGA-WT-AB44 TCGA-XX-A89A TCGA-Z7-A8R5 TCGA-Z7-A8R6 
       11.41        29.03        16.04       108.07       107.05 

  AMP PEAK 17(11Q14.1) MUTATED AMP PEAK 17(11Q14.1) WILD-TYPE 
                          0.33                           0.03 
  AMP PEAK 17(11Q14.1) MUTATED AMP PEAK 17(11Q14.1) WILD-TYPE 
                        211.56                         234.28 
  AMP PEAK 17(11Q14.1) MUTATED AMP PEAK 17(11Q14.1) WILD-TYPE 
                         21.83                          25.05 
[1] "0.3 - 211.6 (21.8)" "0.0 - 234.3 (25.1)"
[1] "hr=" "1.3"
D17V2, continuous
                                vv
clus                             STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  AMP PEAK 17(11Q14.1) MUTATED        18       17        2        1        99
  AMP PEAK 17(11Q14.1) WILD-TYPE      71       64        6        2       254
                                vv
clus                             STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  AMP PEAK 17(11Q14.1) MUTATED          48         0         39          8
  AMP PEAK 17(11Q14.1) WILD-TYPE       197         2        111         21
                                vv
clus                             STAGE IIIC STAGE IV STAGE TIS STAGE X
  AMP PEAK 17(11Q14.1) MUTATED           18        7         1       4
  AMP PEAK 17(11Q14.1) WILD-TYPE         45       13         0       9
D17V3, multiclass
            clus
vv           AMP PEAK 17(11Q14.1) MUTATED AMP PEAK 17(11Q14.1) WILD-TYPE
  STAGE I                              18                             71
  STAGE IA                             17                             64
  STAGE IB                              2                              6
  STAGE II                              1                              2
  STAGE IIA                            99                            254
  STAGE IIB                            48                            197
  STAGE III                             0                              2
  STAGE IIIA                           39                            111
  STAGE IIIB                            8                             21
  STAGE IIIC                           18                             45
  STAGE IV                              7                             13
  STAGE TIS                             1                              0
  STAGE X                               4                              9
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              T1  T2  T3  T4
  AMP PEAK 17(11Q14.1) MUTATED    60 167  22  10
  AMP PEAK 17(11Q14.1) WILD-TYPE 212 449 108  30
D17V4, multiclass
    clus
vv   AMP PEAK 17(11Q14.1) MUTATED AMP PEAK 17(11Q14.1) WILD-TYPE
  T1                           60                            212
  T2                          167                            449
  T3                           22                            108
  T4                           10                             30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              N0  N1  N2  N3
  AMP PEAK 17(11Q14.1) MUTATED   126  73  36  22
  AMP PEAK 17(11Q14.1) WILD-TYPE 375 277  81  53
D17V5, multiclass
    clus
vv   AMP PEAK 17(11Q14.1) MUTATED AMP PEAK 17(11Q14.1) WILD-TYPE
  N0                          126                            375
  N1                           73                            277
  N2                           36                             81
  N3                           22                             53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D17V6, binary
                                cls
clus                               0   1
  AMP PEAK 17(11Q14.1) MUTATED   222   7
  AMP PEAK 17(11Q14.1) WILD-TYPE 657  14
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 17(11Q14.1) MUTATED    222    7
  AMP PEAK 17(11Q14.1) WILD-TYPE  657   14
   clus
vv  AMP PEAK 17(11Q14.1) MUTATED AMP PEAK 17(11Q14.1) WILD-TYPE
  0                          222                            657
  1                            7                             14
[1] 2 2
[1] FALSE
D17V7, binary
                                cls
clus                               0   1
  AMP PEAK 17(11Q14.1) MUTATED   257   5
  AMP PEAK 17(11Q14.1) WILD-TYPE 794   6
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 17(11Q14.1) MUTATED    257    5
  AMP PEAK 17(11Q14.1) WILD-TYPE  794    6
        clus
vv       AMP PEAK 17(11Q14.1) MUTATED AMP PEAK 17(11Q14.1) WILD-TYPE
  FEMALE                          257                            794
  MALE                              5                              6
[1] 2 2
[1] FALSE
                                vv
clus                             INFILTRATING CARCINOMA NOS
  AMP PEAK 17(11Q14.1) MUTATED                            1
  AMP PEAK 17(11Q14.1) WILD-TYPE                          0
                                vv
clus                             INFILTRATING DUCTAL CARCINOMA
  AMP PEAK 17(11Q14.1) MUTATED                             209
  AMP PEAK 17(11Q14.1) WILD-TYPE                           554
                                vv
clus                             INFILTRATING LOBULAR CARCINOMA
  AMP PEAK 17(11Q14.1) MUTATED                               31
  AMP PEAK 17(11Q14.1) WILD-TYPE                            161
                                vv
clus                             MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  AMP PEAK 17(11Q14.1) MUTATED                     2                     1
  AMP PEAK 17(11Q14.1) WILD-TYPE                   4                     3
                                vv
clus                             MIXED HISTOLOGY (PLEASE SPECIFY)
  AMP PEAK 17(11Q14.1) MUTATED                                  3
  AMP PEAK 17(11Q14.1) WILD-TYPE                               27
                                vv
clus                             MUCINOUS CARCINOMA OTHER  SPECIFY
  AMP PEAK 17(11Q14.1) MUTATED                    2             13
  AMP PEAK 17(11Q14.1) WILD-TYPE                 15             35
D17V8, multiclass
                                  clus
vv                                 AMP PEAK 17(11Q14.1) MUTATED
  INFILTRATING CARCINOMA NOS                                  1
  INFILTRATING DUCTAL CARCINOMA                             209
  INFILTRATING LOBULAR CARCINOMA                             31
  MEDULLARY CARCINOMA                                         2
  METAPLASTIC CARCINOMA                                       1
  MIXED HISTOLOGY (PLEASE SPECIFY)                            3
  MUCINOUS CARCINOMA                                          2
  OTHER  SPECIFY                                             13
                                  clus
vv                                 AMP PEAK 17(11Q14.1) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                    0
  INFILTRATING DUCTAL CARCINOMA                               554
  INFILTRATING LOBULAR CARCINOMA                              161
  MEDULLARY CARCINOMA                                           4
  METAPLASTIC CARCINOMA                                         3
  MIXED HISTOLOGY (PLEASE SPECIFY)                             27
  MUCINOUS CARCINOMA                                           15
  OTHER  SPECIFY                                               35
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D17V9, binary
                                cls
clus                               0   1
  AMP PEAK 17(11Q14.1) MUTATED    69 193
  AMP PEAK 17(11Q14.1) WILD-TYPE 219 581
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 17(11Q14.1) MUTATED     69  193
  AMP PEAK 17(11Q14.1) WILD-TYPE  219  581
     clus
vv    AMP PEAK 17(11Q14.1) MUTATED AMP PEAK 17(11Q14.1) WILD-TYPE
  NO                            69                            219
  YES                          193                            581
[1] 2 2
[1] FALSE
D17V10, continuous
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK 17(11Q14.1) MUTATED                                  1     9
  AMP PEAK 17(11Q14.1) WILD-TYPE                                0    51
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 17(11Q14.1) MUTATED                          43   177
  AMP PEAK 17(11Q14.1) WILD-TYPE                       127   559
D17V11, multiclass
                                  clus
vv                                 AMP PEAK 17(11Q14.1) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            1
  ASIAN                                                       9
  BLACK OR AFRICAN AMERICAN                                  43
  WHITE                                                     177
                                  clus
vv                                 AMP PEAK 17(11Q14.1) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              0
  ASIAN                                                        51
  BLACK OR AFRICAN AMERICAN                                   127
  WHITE                                                       559
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D17V12, binary
                                cls
clus                               0   1
  AMP PEAK 17(11Q14.1) MUTATED     6 210
  AMP PEAK 17(11Q14.1) WILD-TYPE  32 648
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 17(11Q14.1) MUTATED      6  210
  AMP PEAK 17(11Q14.1) WILD-TYPE   32  648
                        clus
vv                       AMP PEAK 17(11Q14.1) MUTATED
  HISPANIC OR LATINO                                6
  NOT HISPANIC OR LATINO                          210
                        clus
vv                       AMP PEAK 17(11Q14.1) WILD-TYPE
  HISPANIC OR LATINO                                 32
  NOT HISPANIC OR LATINO                            648
[1] 2 2
[1] FALSE

Clustering(18) Variable = AMP PEAK 18(12P13.33) MUTATION ANALYSIS
D18V1, survival
                                 sevent
clus2                               0   1
  AMP PEAK 18(12P13.33) MUTATED   243  32
  AMP PEAK 18(12P13.33) WILD-TYPE 673  96
  AMP PEAK 18(12P13.33) MUTATED AMP PEAK 18(12P13.33) WILD-TYPE 
                            275                             769 
  AMP PEAK 18(12P13.33) MUTATED AMP PEAK 18(12P13.33) WILD-TYPE 
                             32                              96 
$`AMP PEAK 18(12P13.33) MUTATED`
TCGA-3C-AAAU TCGA-A1-A0SF TCGA-A1-A0SH TCGA-A1-A0SJ TCGA-A1-A0SK TCGA-A1-A0SN 
      129.14        48.10        47.24        13.68        31.79        39.32 
TCGA-A1-A0SO TCGA-A1-A0SP TCGA-A2-A04T TCGA-A2-A0CS TCGA-A2-A0CU TCGA-A2-A0CX 
       28.01        19.20        73.84        75.55         5.19        56.81 
TCGA-A2-A0D0 TCGA-A2-A0D2 TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EY TCGA-A2-A0YE 
       67.33        33.76        35.05        34.29        63.29        18.21 
TCGA-A2-A0YH TCGA-A2-A0YJ TCGA-A2-A0YM TCGA-A2-A1FW TCGA-A2-A1G1 TCGA-A2-A3XS 
       21.67        18.61        31.73        17.36        19.20        33.93 
TCGA-A2-A3XT TCGA-A2-A3XW TCGA-A2-A3Y0 TCGA-A7-A0CD TCGA-A7-A0CE TCGA-A7-A0DC 
       83.01        49.48        38.37        38.30        35.31        29.79 
TCGA-A7-A13D TCGA-A7-A13E TCGA-A7-A13F TCGA-A7-A26E TCGA-A7-A26J TCGA-A7-A2KD 
       31.73        20.19        25.15        31.36        20.61        22.32 
TCGA-A7-A425 TCGA-A7-A4SB TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF TCGA-A7-A56D 
       14.70        13.74        14.50        21.17        17.92        14.73 
TCGA-A7-A5ZV TCGA-A7-A6VW TCGA-A7-A6VX TCGA-A8-A06R TCGA-A8-A06Y TCGA-A8-A076 
       12.10         9.37        10.42        17.98        26.01        53.98 
TCGA-A8-A079 TCGA-A8-A07L TCGA-A8-A07R TCGA-A8-A07U TCGA-A8-A07Z TCGA-A8-A08G 
        9.01        32.05         8.98        24.99        45.07        19.96 
TCGA-A8-A08J TCGA-A8-A08P TCGA-A8-A08R TCGA-A8-A08S TCGA-A8-A092 TCGA-A8-A09A 
       37.05        31.00         0.99        33.01        30.97         9.99 
TCGA-A8-A09C TCGA-A8-A09K TCGA-A8-A09M TCGA-A8-A09N TCGA-A8-A09Q TCGA-A8-A09X 
        1.02        29.98        33.07         1.02        25.02        14.01 
TCGA-A8-A0A1 TCGA-A8-A0A9 TCGA-AC-A23E TCGA-AC-A2FM TCGA-AC-A2QH TCGA-AC-A3W5 
       12.00        27.02         2.37        26.04        33.04        16.57 
TCGA-AC-A62X TCGA-AC-A6IW TCGA-AN-A03Y TCGA-AN-A04C TCGA-AN-A0AL TCGA-AN-A0AM 
       13.71        13.58         0.33         1.78         6.51         0.16 
TCGA-AN-A0AR TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FT TCGA-AN-A0FW TCGA-AN-A0FY 
        0.33         7.96         7.00         7.04         0.36         0.33 
TCGA-AN-A0FZ TCGA-AN-A0XO TCGA-AN-A0XU TCGA-AO-A03L TCGA-AO-A03N TCGA-AO-A03O 
        0.33        12.33         0.33        80.28        66.77        81.63 
TCGA-AO-A03P TCGA-AO-A0J2 TCGA-AO-A0J4 TCGA-AO-A0J7 TCGA-AO-A0J9 TCGA-AO-A0JD 
       95.70        32.78        52.18        20.32        53.03        72.00 
TCGA-AO-A0JL TCGA-AO-A124 TCGA-AO-A129 TCGA-AO-A12E TCGA-AO-A12F TCGA-AO-A1KQ 
       55.33       102.58       108.03        57.30        48.36        61.87 
TCGA-AO-A1KR TCGA-AO-A1KS TCGA-AQ-A04J TCGA-AQ-A0Y5 TCGA-AQ-A54N TCGA-AR-A0TQ 
       70.39         0.53        26.93         5.65         2.56        73.64 
TCGA-AR-A0TS TCGA-AR-A0TV TCGA-AR-A0U3 TCGA-AR-A0U4 TCGA-AR-A1AI TCGA-AR-A1AK 
       74.79        42.35       114.02        85.97        61.84        51.25 
TCGA-AR-A1AQ TCGA-AR-A24H TCGA-AR-A24Q TCGA-AR-A24W TCGA-AR-A24Z TCGA-AR-A2LR 
       43.07       160.90       104.28        50.96        79.00        20.38 
TCGA-AR-A5QM TCGA-B6-A0I2 TCGA-B6-A0I9 TCGA-B6-A0IJ TCGA-B6-A0IO TCGA-B6-A0IQ 
       54.74       143.38        12.13       176.98       110.14       140.88 
TCGA-B6-A0RE TCGA-B6-A0RO TCGA-B6-A0RS TCGA-B6-A0WV TCGA-B6-A0WY TCGA-B6-A0X1 
      211.56       162.05       100.70        79.63       113.79       186.48 
TCGA-B6-A1KC TCGA-B6-A1KI TCGA-B6-A402 TCGA-B6-A408 TCGA-BH-A0AU TCGA-BH-A0AV 
       43.59        73.51        74.99        68.12        24.53        59.84 
TCGA-BH-A0B5 TCGA-BH-A0B9 TCGA-BH-A0BA TCGA-BH-A0BG TCGA-BH-A0BL TCGA-BH-A0BT 
       48.36        51.68        37.22        24.85        44.05        45.57 
TCGA-BH-A0C1 TCGA-BH-A0DL TCGA-BH-A0E0 TCGA-BH-A0E7 TCGA-BH-A0EB TCGA-BH-A0GY 
       44.02        48.23         4.41        44.81        24.49        30.35 
TCGA-BH-A0HX TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18N TCGA-BH-A18Q TCGA-BH-A18R 
       27.25        90.84        26.66        37.74        55.63        37.55 
TCGA-BH-A18T TCGA-BH-A18V TCGA-BH-A1EO TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EW 
        7.36        51.16        91.99        42.28        12.00        55.69 
TCGA-BH-A1FC TCGA-BH-A1FN TCGA-BH-A202 TCGA-BH-A203 TCGA-BH-A5IZ TCGA-BH-A5J0 
      114.15        72.07        26.14        38.60        18.64        23.51 
TCGA-BH-A6R8 TCGA-BH-A8FZ TCGA-C8-A12L TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12U 
        9.63        18.87        11.93        12.66        11.77        12.66 
TCGA-C8-A12W TCGA-C8-A130 TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HM TCGA-C8-A26Z 
       12.66         3.16         0.16        12.03         2.30         8.28 
TCGA-D8-A13Z TCGA-D8-A143 TCGA-D8-A147 TCGA-D8-A1J8 TCGA-D8-A1JC TCGA-D8-A1JD 
       20.88        14.17        19.20        14.17        15.78        18.15 
TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1XD TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XU 
       20.09        19.40        17.16        21.83        14.50        12.99 
TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A27F TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27R 
       15.32        15.52        16.04        13.48         4.80        10.09 
TCGA-D8-A27W TCGA-D8-A3Z6 TCGA-E2-A107 TCGA-E2-A109 TCGA-E2-A10B TCGA-E2-A10C 
       12.26        18.51        34.42        46.59        37.51        40.11 
TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14R TCGA-E2-A150 TCGA-E2-A152 
       47.15        44.68        40.96        38.60        25.41        27.12 
TCGA-E2-A158 TCGA-E2-A15A TCGA-E2-A15G TCGA-E2-A15O TCGA-E2-A15S TCGA-E2-A1AZ 
       14.79        23.34        18.21        13.02        14.07        60.53 
TCGA-E2-A1IH TCGA-E2-A1II TCGA-E2-A1IO TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LL 
       33.73        33.70        20.98       106.75       102.61        43.04 
TCGA-E2-A2P5 TCGA-E2-A56Z TCGA-E2-A573 TCGA-E2-A574 TCGA-E9-A1N6 TCGA-E9-A1N8 
       16.93         8.28        34.92        26.56        13.48        12.00 
TCGA-E9-A1N9 TCGA-E9-A1NA TCGA-E9-A1NC TCGA-E9-A1NF TCGA-E9-A1NI TCGA-E9-A1R6 
       13.12        36.56        39.55        35.24         9.86         2.76 
TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RG TCGA-E9-A22G TCGA-E9-A243 TCGA-E9-A244 
       32.09        40.24        21.27        23.51        17.06         0.69 
TCGA-E9-A247 TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A3QA TCGA-EW-A1J6 TCGA-EW-A1OW 
       27.22         0.72        29.72        30.18        28.77        22.82 
TCGA-EW-A1P4 TCGA-EW-A1P8 TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A3U0 TCGA-GI-A2C9 
       29.82         7.86        19.99         6.15        17.49       109.87 
TCGA-GM-A2DD TCGA-GM-A2DF TCGA-GM-A3XL TCGA-HN-A2NL TCGA-LD-A66U TCGA-LD-A7W5 
       75.02        70.85        69.30         2.60        21.24         7.10 
TCGA-LL-A440 TCGA-LL-A441 TCGA-LL-A5YP TCGA-LL-A6FP TCGA-LL-A6FQ TCGA-LL-A73Y 
       24.95        11.44        14.79        22.26         2.63        15.68 
TCGA-LL-A7SZ TCGA-LL-A7T0 TCGA-LL-A8F5 TCGA-OL-A5D7 TCGA-OL-A5RV TCGA-OL-A5RW 
       14.70        12.36        14.73        58.52        34.92        36.36 
TCGA-S3-A6ZF TCGA-S3-A6ZG TCGA-S3-AA10 TCGA-UL-AAZ6 TCGA-Z7-A8R5 
       16.50        13.12        15.39        17.03       108.07 

$`AMP PEAK 18(12P13.33) WILD-TYPE`
TCGA-3C-AALI TCGA-3C-AALJ TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT0 TCGA-5L-AAT1 
      131.67        42.81        40.14        11.44        48.56        48.36 
TCGA-5T-A9QA TCGA-A1-A0SB TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SG TCGA-A1-A0SI 
        9.96         8.52        14.37        43.43        14.27        20.88 
TCGA-A1-A0SM TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04P TCGA-A2-A04Q TCGA-A2-A04R 
        7.96        18.21       104.81        18.02        78.41       121.94 
TCGA-A2-A04U TCGA-A2-A04V TCGA-A2-A04W TCGA-A2-A04X TCGA-A2-A04Y TCGA-A2-A0CK 
       87.25        63.12       101.98        55.43        36.13       136.73 
TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CQ TCGA-A2-A0CR 
       99.12        24.79       114.81        92.48        88.60       107.93 
TCGA-A2-A0CT TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0D1 TCGA-A2-A0D3 TCGA-A2-A0D4 
       75.25        98.99       107.93        34.55        61.58        25.22 
TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0EQ TCGA-A2-A0ER 
      101.72       134.40        80.28       107.61        79.76        74.40 
TCGA-A2-A0ES TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0ST TCGA-A2-A0SU 
       72.00        31.82        61.94        24.72        99.19        54.64 
TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0SX TCGA-A2-A0SY TCGA-A2-A0T0 TCGA-A2-A0T1 
       27.12        44.88        50.43        44.28        17.52        17.13 
TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T4 TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0T7 
        8.38        49.84        20.52        17.46        18.90        20.75 
TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YF TCGA-A2-A0YG TCGA-A2-A0YI TCGA-A2-A0YK 
       32.55        25.28        50.47        21.90        49.48        19.33 
TCGA-A2-A0YL TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FX TCGA-A2-A1FZ TCGA-A2-A1G0 
       48.46        23.77        23.47        60.72        22.45        20.25 
TCGA-A2-A1G4 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25A TCGA-A2-A25B TCGA-A2-A25C 
       19.56        16.47        52.47       107.70        42.44        17.19 
TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD TCGA-A2-A3XU 
       18.15       105.34        10.59        20.88        39.65        29.98 
TCGA-A2-A3XV TCGA-A2-A3XX TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A4RW TCGA-A2-A4RX 
       32.75        47.31        34.98        50.37         7.30        24.39 
TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CG 
       21.30        23.21        26.96        21.14        21.90        34.29 
TCGA-A7-A0CH TCGA-A7-A0CJ TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A13G 
       35.47        30.61        37.45        35.67        33.11        23.61 
TCGA-A7-A13H TCGA-A7-A26F TCGA-A7-A26G TCGA-A7-A26H TCGA-A7-A26I TCGA-A7-A3IY 
       29.56        24.26        23.74        23.80        21.73        11.34 
TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3J1 TCGA-A7-A3RF TCGA-A7-A426 TCGA-A7-A4SA 
       10.59        10.29        11.28        13.41        11.97        14.93 
TCGA-A7-A5ZW TCGA-A7-A5ZX TCGA-A7-A6VV TCGA-A7-A6VY TCGA-A8-A06O TCGA-A8-A06P 
       10.72        11.05        10.29         8.75        13.02        13.02 
TCGA-A8-A06Q TCGA-A8-A06T TCGA-A8-A06U TCGA-A8-A06X TCGA-A8-A06Z TCGA-A8-A075 
        1.02        53.06        29.03        31.00         1.02        17.03 
TCGA-A8-A07B TCGA-A8-A07E TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07J 
       43.00        19.99        18.97        18.97        14.01        12.00 
TCGA-A8-A07O TCGA-A8-A07P TCGA-A8-A07S TCGA-A8-A07W TCGA-A8-A082 TCGA-A8-A084 
        9.99        10.98         7.99         9.99        18.05        15.06 
TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08B TCGA-A8-A08C TCGA-A8-A08F 
       36.95        13.02         0.99        38.01        28.96        33.01 
TCGA-A8-A08I TCGA-A8-A08L TCGA-A8-A08O TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A08Z 
       12.00         9.99        31.00       112.08        43.00        40.01 
TCGA-A8-A091 TCGA-A8-A093 TCGA-A8-A095 TCGA-A8-A097 TCGA-A8-A099 TCGA-A8-A09B 
       33.01        17.95        41.98        12.00         9.99        12.00 
TCGA-A8-A09D TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09V 
       50.04        49.05        45.07         8.98        19.04        15.02 
TCGA-A8-A09W TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A7 TCGA-A8-A0AB 
        0.99        19.04        13.02        21.04         0.99        17.03 
TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23G TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2BK 
       38.04         0.95        10.85         5.72         1.48        38.53 
TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FO 
       99.35        40.57        55.43        36.99        38.79        50.70 
TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QP 
        0.92         2.27        32.45        16.31        14.83        22.19 
TCGA-AC-A3TN TCGA-AC-A3W6 TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A5XS TCGA-AC-A62V 
       14.99        19.79        23.24        24.79         1.55        11.44 
TCGA-AC-A62Y TCGA-AC-A6IV TCGA-AC-A6IX TCGA-AC-A6NO TCGA-AC-A7VB TCGA-AC-A7VC 
       17.42        18.67        12.26         1.68         8.22         0.03 
TCGA-AC-A8OP TCGA-AC-A8OQ TCGA-AC-A8OR TCGA-AC-A8OS TCGA-AN-A03X TCGA-AN-A041 
       20.19         1.12         1.32         2.30         0.33         0.23 
TCGA-AN-A046 TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AK 
        0.33         0.62         2.96         1.71         9.96         7.36 
TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FL TCGA-AN-A0FN 
        0.33         0.33         6.44         5.65         7.59         7.17 
TCGA-AN-A0FS TCGA-AN-A0FV TCGA-AN-A0FX TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XP 
        6.28         0.33         0.33         0.33         0.33         0.30 
TCGA-AN-A0XR TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03M 
        0.33         0.33         0.33         5.33         5.59        61.35 
TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J3 TCGA-AO-A0J5 
       68.75        47.87        58.95        29.13        21.40        26.04 
TCGA-AO-A0J6 TCGA-AO-A0J8 TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JC TCGA-AO-A0JE 
       37.48        22.36        21.53        50.70        50.86        76.77 
TCGA-AO-A0JF TCGA-AO-A0JG TCGA-AO-A0JI TCGA-AO-A0JJ TCGA-AO-A0JM TCGA-AO-A125 
       21.37        26.24        50.24        62.04        71.80        99.25 
TCGA-AO-A126 TCGA-AO-A128 TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A12G 
      108.72       106.78        90.58        98.27        64.04        41.62 
TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KT TCGA-AQ-A04H TCGA-AQ-A04L 
       28.37        14.73        82.62        17.79        24.79       130.09 
TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AQ-A54O TCGA-AQ-A7U7 TCGA-AR-A0TP TCGA-AR-A0TR 
       15.62        32.52        32.91        19.20       111.32         5.26 
TCGA-AR-A0TT TCGA-AR-A0TW TCGA-AR-A0TX TCGA-AR-A0TY TCGA-AR-A0TZ TCGA-AR-A0U0 
       86.66        98.93        64.83        55.86       107.24        65.36 
TCGA-AR-A0U1 TCGA-AR-A0U2 TCGA-AR-A1AH TCGA-AR-A1AJ TCGA-AR-A1AL TCGA-AR-A1AM 
      101.95        83.87        75.55        52.77        48.82        76.11 
TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AR TCGA-AR-A1AS TCGA-AR-A1AU 
       43.73        43.56        39.98        17.23        37.81        76.21 
TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24K TCGA-AR-A24L 
       61.28        63.62        62.14        33.73        50.89        94.22 
TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24R TCGA-AR-A24S 
       96.89        78.51        84.20         2.76        87.22        97.84 
TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24V TCGA-AR-A24X TCGA-AR-A250 TCGA-AR-A251 
       76.01        53.36        85.35        83.77        89.00        78.48 
TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LE TCGA-AR-A2LH 
       73.18        72.76        58.92        93.83       143.21        20.25 
TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LL TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO 
       62.86        54.21        66.15        52.11        38.17        39.39 
TCGA-AR-A2LQ TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I5 
       40.54        16.04        20.45        10.59        77.62       149.59 
TCGA-B6-A0IA TCGA-B6-A0IB TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IH 
      220.90       129.57        50.70        65.72       146.50       112.37 
TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IP TCGA-B6-A0RG TCGA-B6-A0RH 
       18.77       126.12        84.59       110.93        68.45       189.01 
TCGA-B6-A0RI TCGA-B6-A0RL TCGA-B6-A0RM TCGA-B6-A0RN TCGA-B6-A0RP TCGA-B6-A0RQ 
      234.28        81.17        78.02       172.96       102.77       140.48 
TCGA-B6-A0RT TCGA-B6-A0RU TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WW 
       89.46       131.21       157.41        97.48       188.68        18.35 
TCGA-B6-A0WX TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 
       21.47       129.57       129.70        28.27        68.94        58.88 
TCGA-B6-A1KF TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A401 TCGA-B6-A40B TCGA-B6-A40C 
      101.52       139.17       170.17        85.35       103.63        71.15 
TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B2 TCGA-BH-A0B3 
       20.45        25.55        28.50        46.95        40.83        39.55 
TCGA-BH-A0B4 TCGA-BH-A0B6 TCGA-BH-A0B7 TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BF 
       39.16        56.94        56.98        32.02        18.21        25.71 
TCGA-BH-A0BJ TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BP TCGA-BH-A0BQ TCGA-BH-A0BR 
       21.70        61.68        35.67        48.69        27.19        53.69 
TCGA-BH-A0BS TCGA-BH-A0BV TCGA-BH-A0BW TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C3 
       53.95        49.94        11.67        49.05        41.75        48.13 
TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DI 
       42.90        45.83        31.17        23.44        38.01        22.13 
TCGA-BH-A0DK TCGA-BH-A0DO TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DT 
       13.91        17.26        15.65         3.22         2.56        38.47 
TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E6 
       67.86        47.41        16.27        15.68        14.30         9.63 
TCGA-BH-A0E9 TCGA-BH-A0EA TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0GZ TCGA-BH-A0H0 
       46.19        32.58        31.00        24.43        10.78        15.16 
TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H7 TCGA-BH-A0H9 TCGA-BH-A0HA 
       37.78        35.51        24.56        23.08        41.00        52.96 
TCGA-BH-A0HB TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ 
       26.50        20.38         5.85         2.50        13.61        36.85 
TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HY TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 
       12.89        51.32        50.79         5.59        23.93        24.95 
TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A0WA TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18I 
       42.35        44.81        23.05         8.81         2.01         7.23 
TCGA-BH-A18J TCGA-BH-A18M TCGA-BH-A18P TCGA-BH-A18S TCGA-BH-A18U TCGA-BH-A1EN 
       20.12        72.56        30.28        66.05        51.39        69.93 
TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EX TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F2 
      113.82        82.85        49.58        17.69        25.81        31.53 
TCGA-BH-A1F5 TCGA-BH-A1F6 TCGA-BH-A1F8 TCGA-BH-A1FB TCGA-BH-A1FD TCGA-BH-A1FE 
       89.16        97.48        24.66       120.62        33.17        74.73 
TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FM TCGA-BH-A1FR 
      122.89        36.92        63.35        55.00        45.63       144.59 
TCGA-BH-A1FU TCGA-BH-A201 TCGA-BH-A204 TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A28O 
       72.07        28.14        83.31        57.83       130.16        10.65 
TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A6R9 
        6.44        20.12        10.52       109.28         8.94         5.26 
TCGA-BH-A8FY TCGA-BH-A8G0 TCGA-BH-AB28 TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12Q 
        9.70        21.76         9.44        11.77        11.77        12.66 
TCGA-C8-A12V TCGA-C8-A12X TCGA-C8-A12Z TCGA-C8-A131 TCGA-C8-A132 TCGA-C8-A134 
       12.66        12.66         0.39         2.24         1.87         1.12 
TCGA-C8-A135 TCGA-C8-A137 TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HG 
        1.05         4.11         4.08        12.33        10.92        11.34 
TCGA-C8-A1HI TCGA-C8-A1HL TCGA-C8-A1HN TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A26X 
       11.28        10.42         3.25         0.30         0.23         0.36 
TCGA-C8-A26Y TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A27A 
        0.43         9.67         9.53         0.03         9.50        12.20 
TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-C8-A8HP TCGA-C8-A8HQ TCGA-C8-A8HR 
        0.99         0.03         0.23        13.02        12.49        13.41 
TCGA-C8-A9FZ TCGA-D8-A13Y TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A145 
       19.46        11.90        13.25        20.58        13.97        13.48 
TCGA-D8-A146 TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JE TCGA-D8-A1JF 
       21.14        17.49        16.50        18.71        18.90        12.03 
TCGA-D8-A1JG TCGA-D8-A1JH TCGA-D8-A1JI TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JN 
       12.03        14.01        18.97        20.09        20.12        20.38 
TCGA-D8-A1JP TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X6 
       21.01        12.20        13.32        14.70        18.58        17.79 
TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC 
       16.73        25.74        23.90        27.58        18.15        12.39 
TCGA-D8-A1XF TCGA-D8-A1XG TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XQ 
       15.22        14.73        19.92        17.69        15.55        16.41 
TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XT TCGA-D8-A1XV TCGA-D8-A1XW TCGA-D8-A1XY 
       15.85        16.31         6.35        15.16        12.66        16.54 
TCGA-D8-A1Y1 TCGA-D8-A1Y2 TCGA-D8-A1Y3 TCGA-D8-A27E TCGA-D8-A27G TCGA-D8-A27H 
        9.93        14.24        14.14        17.42        13.45        13.05 
TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27P TCGA-D8-A27T TCGA-D8-A27V 
       14.43         9.44        16.41         0.76        13.08        12.53 
TCGA-D8-A3Z5 TCGA-D8-A4Z1 TCGA-D8-A73U TCGA-D8-A73W TCGA-D8-A73X TCGA-E2-A105 
       33.37        21.67        16.18         8.02        12.10        43.00 
TCGA-E2-A108 TCGA-E2-A10A TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14Q TCGA-E2-A14S 
       27.52        40.41        28.44        28.87        38.24        33.17 
TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14W TCGA-E2-A14X TCGA-E2-A14Y 
       33.30        43.33        34.26        32.02        31.96        28.60 
TCGA-E2-A14Z TCGA-E2-A153 TCGA-E2-A154 TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A159 
       18.51        23.24        19.43        21.04        23.87        25.05 
TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15H TCGA-E2-A15I 
       22.82        17.29        20.71        21.63        12.92        17.42 
TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15P TCGA-E2-A15R 
       19.40         9.04        20.58        11.05        19.56        17.06 
TCGA-E2-A15T TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 
       14.99        53.62        53.03        33.01        32.35        28.50 
TCGA-E2-A1BC TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1IJ 
       16.47        17.10        38.30        37.41        32.78        28.44 
TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L7 
       22.65         3.88        22.19        11.08        54.18        27.42 
TCGA-E2-A1L8 TCGA-E2-A1L9 TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LG 
       39.62        19.66        24.59        40.47        28.90        18.87 
TCGA-E2-A1LK TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A570 TCGA-E2-A576 TCGA-E2-A9RU 
        8.75         5.52        15.72        30.61        34.29        12.85 
TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NG 
       34.82        32.88        36.82        12.59        35.77        25.84 
TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R5 
       11.90        28.27        34.95         2.56         6.12         3.02 
TCGA-E9-A1R7 TCGA-E9-A1RA TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RH 
       21.21        32.09         1.12        34.65         6.58        34.59 
TCGA-E9-A1RI TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A 
       35.64        34.13        32.05        12.53        13.32        39.09 
TCGA-E9-A22B TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A22H TCGA-E9-A248 TCGA-E9-A249 
       22.75        41.03        12.89        20.71         1.94         7.13 
TCGA-E9-A24A TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3X8 TCGA-E9-A54X 
       24.56         0.76        26.07        18.41        15.72        12.33 
TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UO TCGA-E9-A5UP TCGA-E9-A6HE 
       23.84        14.70         0.79        13.81        14.40        15.39 
TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 
       12.20        39.72         8.48        18.21        18.90        13.25 
TCGA-EW-A1J3 TCGA-EW-A1J5 TCGA-EW-A1OV TCGA-EW-A1OX TCGA-EW-A1OY TCGA-EW-A1OZ 
       16.57        15.68        25.94        29.95        29.85        40.41 
TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P3 TCGA-EW-A1P5 TCGA-EW-A1P6 TCGA-EW-A1P7 
       41.13        39.78        52.96        23.11        18.48        30.08 
TCGA-EW-A1PA TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PF TCGA-EW-A1PG TCGA-EW-A1PH 
       18.90        13.94        10.52        14.43        34.55        19.96 
TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A423 
       55.00        52.73        25.91        22.09        34.03        10.16 
TCGA-EW-A424 TCGA-GI-A2C8 TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DC 
       23.51         7.40        59.57       216.76        79.10        83.34 
TCGA-GM-A2DH TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN 
       72.10        85.15        86.96       115.69       106.06       101.62 
TCGA-GM-A2DO TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XN TCGA-GM-A4E0 
       85.35       110.50        38.20        43.73        66.38        72.03 
TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2OB TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LD-A74U 
       13.55        18.12        62.43        11.84        11.57        13.22 
TCGA-LD-A7W6 TCGA-LD-A9QF TCGA-LL-A442 TCGA-LL-A50Y TCGA-LL-A5YL TCGA-LL-A5YM 
       13.28        10.62        10.95        25.05        17.06        15.32 
TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LL-A6FR TCGA-LL-A73Z TCGA-LL-A740 TCGA-LL-A9Q3 
       14.70        14.47        16.08         7.46        14.50        14.07 
TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5D8 TCGA-OL-A5DA 
       27.91        22.39         2.10        36.30        31.99        58.62 
TCGA-OL-A5RU TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66H 
       40.08        28.87        24.72        22.32        20.38        26.70 
TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66K TCGA-OL-A66L TCGA-OL-A66N TCGA-OL-A66O 
       23.47        65.62        41.92        42.77        26.04        17.36 
TCGA-OL-A66P TCGA-OL-A6VO TCGA-OL-A6VQ TCGA-OL-A6VR TCGA-OL-A97C TCGA-PE-A5DC 
       14.07        28.21        19.73        40.11         8.91        47.01 
TCGA-PE-A5DD TCGA-PE-A5DE TCGA-PL-A8LX TCGA-PL-A8LY TCGA-PL-A8LZ TCGA-S3-A6ZH 
       64.21        86.96         0.16         0.26         9.93        16.93 
TCGA-S3-AA0Z TCGA-S3-AA11 TCGA-S3-AA12 TCGA-S3-AA14 TCGA-S3-AA15 TCGA-S3-AA17 
       16.80        13.84        15.35        14.96        13.84        13.94 
TCGA-UU-A93S TCGA-W8-A86G TCGA-WT-AB41 TCGA-WT-AB44 TCGA-XX-A899 TCGA-XX-A89A 
        3.81        11.41        52.96        29.03        15.35        16.04 
TCGA-Z7-A8R6 
      107.05 

  AMP PEAK 18(12P13.33) MUTATED AMP PEAK 18(12P13.33) WILD-TYPE 
                           0.16                            0.03 
  AMP PEAK 18(12P13.33) MUTATED AMP PEAK 18(12P13.33) WILD-TYPE 
                         211.56                          234.28 
  AMP PEAK 18(12P13.33) MUTATED AMP PEAK 18(12P13.33) WILD-TYPE 
                          26.04                           23.80 
[1] "0.2 - 211.6 (26.0)" "0.0 - 234.3 (23.8)"
[1] "hr=" "1"  
D18V2, continuous
                                 vv
clus                              STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  AMP PEAK 18(12P13.33) MUTATED        18       16        1        1       105
  AMP PEAK 18(12P13.33) WILD-TYPE      71       65        7        2       248
                                 vv
clus                              STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  AMP PEAK 18(12P13.33) MUTATED          57         0         43          9
  AMP PEAK 18(12P13.33) WILD-TYPE       188         2        107         20
                                 vv
clus                              STAGE IIIC STAGE IV STAGE TIS STAGE X
  AMP PEAK 18(12P13.33) MUTATED           18        5         0       4
  AMP PEAK 18(12P13.33) WILD-TYPE         45       15         1       9
D18V3, multiclass
            clus
vv           AMP PEAK 18(12P13.33) MUTATED AMP PEAK 18(12P13.33) WILD-TYPE
  STAGE I                               18                              71
  STAGE IA                              16                              65
  STAGE IB                               1                               7
  STAGE II                               1                               2
  STAGE IIA                            105                             248
  STAGE IIB                             57                             188
  STAGE III                              0                               2
  STAGE IIIA                            43                             107
  STAGE IIIB                             9                              20
  STAGE IIIC                            18                              45
  STAGE IV                               5                              15
  STAGE TIS                              0                               1
  STAGE X                                4                               9
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                               T1  T2  T3  T4
  AMP PEAK 18(12P13.33) MUTATED    49 182  34  12
  AMP PEAK 18(12P13.33) WILD-TYPE 223 434  96  28
D18V4, multiclass
    clus
vv   AMP PEAK 18(12P13.33) MUTATED AMP PEAK 18(12P13.33) WILD-TYPE
  T1                            49                             223
  T2                           182                             434
  T3                            34                              96
  T4                            12                              28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                               N0  N1  N2  N3
  AMP PEAK 18(12P13.33) MUTATED   138  84  31  21
  AMP PEAK 18(12P13.33) WILD-TYPE 363 266  86  54
D18V5, multiclass
    clus
vv   AMP PEAK 18(12P13.33) MUTATED AMP PEAK 18(12P13.33) WILD-TYPE
  N0                           138                             363
  N1                            84                             266
  N2                            31                              86
  N3                            21                              54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D18V6, binary
                                 cls
clus                                0   1
  AMP PEAK 18(12P13.33) MUTATED   238   5
  AMP PEAK 18(12P13.33) WILD-TYPE 641  16
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 18(12P13.33) MUTATED    238    5
  AMP PEAK 18(12P13.33) WILD-TYPE  641   16
   clus
vv  AMP PEAK 18(12P13.33) MUTATED AMP PEAK 18(12P13.33) WILD-TYPE
  0                           238                             641
  1                             5                              16
[1] 2 2
[1] FALSE
D18V7, binary
                                 cls
clus                                0   1
  AMP PEAK 18(12P13.33) MUTATED   278   1
  AMP PEAK 18(12P13.33) WILD-TYPE 773  10
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 18(12P13.33) MUTATED    278    1
  AMP PEAK 18(12P13.33) WILD-TYPE  773   10
        clus
vv       AMP PEAK 18(12P13.33) MUTATED AMP PEAK 18(12P13.33) WILD-TYPE
  FEMALE                           278                             773
  MALE                               1                              10
[1] 2 2
[1] FALSE
                                 vv
clus                              INFILTRATING CARCINOMA NOS
  AMP PEAK 18(12P13.33) MUTATED                            1
  AMP PEAK 18(12P13.33) WILD-TYPE                          0
                                 vv
clus                              INFILTRATING DUCTAL CARCINOMA
  AMP PEAK 18(12P13.33) MUTATED                             227
  AMP PEAK 18(12P13.33) WILD-TYPE                           536
                                 vv
clus                              INFILTRATING LOBULAR CARCINOMA
  AMP PEAK 18(12P13.33) MUTATED                               27
  AMP PEAK 18(12P13.33) WILD-TYPE                            165
                                 vv
clus                              MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  AMP PEAK 18(12P13.33) MUTATED                     4                     0
  AMP PEAK 18(12P13.33) WILD-TYPE                   2                     4
                                 vv
clus                              MIXED HISTOLOGY (PLEASE SPECIFY)
  AMP PEAK 18(12P13.33) MUTATED                                 10
  AMP PEAK 18(12P13.33) WILD-TYPE                               20
                                 vv
clus                              MUCINOUS CARCINOMA OTHER  SPECIFY
  AMP PEAK 18(12P13.33) MUTATED                    1              9
  AMP PEAK 18(12P13.33) WILD-TYPE                 16             39
D18V8, multiclass
                                  clus
vv                                 AMP PEAK 18(12P13.33) MUTATED
  INFILTRATING CARCINOMA NOS                                   1
  INFILTRATING DUCTAL CARCINOMA                              227
  INFILTRATING LOBULAR CARCINOMA                              27
  MEDULLARY CARCINOMA                                          4
  METAPLASTIC CARCINOMA                                        0
  MIXED HISTOLOGY (PLEASE SPECIFY)                            10
  MUCINOUS CARCINOMA                                           1
  OTHER  SPECIFY                                               9
                                  clus
vv                                 AMP PEAK 18(12P13.33) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                     0
  INFILTRATING DUCTAL CARCINOMA                                536
  INFILTRATING LOBULAR CARCINOMA                               165
  MEDULLARY CARCINOMA                                            2
  METAPLASTIC CARCINOMA                                          4
  MIXED HISTOLOGY (PLEASE SPECIFY)                              20
  MUCINOUS CARCINOMA                                            16
  OTHER  SPECIFY                                                39
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D18V9, binary
                                 cls
clus                                0   1
  AMP PEAK 18(12P13.33) MUTATED    83 196
  AMP PEAK 18(12P13.33) WILD-TYPE 205 578
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 18(12P13.33) MUTATED     83  196
  AMP PEAK 18(12P13.33) WILD-TYPE  205  578
     clus
vv    AMP PEAK 18(12P13.33) MUTATED AMP PEAK 18(12P13.33) WILD-TYPE
  NO                             83                             205
  YES                           196                             578
[1] 2 2
[1] FALSE
D18V10, continuous
                                 vv
clus                              AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK 18(12P13.33) MUTATED                                  0    13
  AMP PEAK 18(12P13.33) WILD-TYPE                                1    47
                                 vv
clus                              BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 18(12P13.33) MUTATED                          59   178
  AMP PEAK 18(12P13.33) WILD-TYPE                       111   558
D18V11, multiclass
                                  clus
vv                                 AMP PEAK 18(12P13.33) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                             0
  ASIAN                                                       13
  BLACK OR AFRICAN AMERICAN                                   59
  WHITE                                                      178
                                  clus
vv                                 AMP PEAK 18(12P13.33) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                               1
  ASIAN                                                         47
  BLACK OR AFRICAN AMERICAN                                    111
  WHITE                                                        558
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D18V12, binary
                                 cls
clus                                0   1
  AMP PEAK 18(12P13.33) MUTATED     5 231
  AMP PEAK 18(12P13.33) WILD-TYPE  33 627
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 18(12P13.33) MUTATED      5  231
  AMP PEAK 18(12P13.33) WILD-TYPE   33  627
                        clus
vv                       AMP PEAK 18(12P13.33) MUTATED
  HISPANIC OR LATINO                                 5
  NOT HISPANIC OR LATINO                           231
                        clus
vv                       AMP PEAK 18(12P13.33) WILD-TYPE
  HISPANIC OR LATINO                                  33
  NOT HISPANIC OR LATINO                             627
[1] 2 2
[1] FALSE

Clustering(19) Variable = AMP PEAK 19(12Q15) MUTATION ANALYSIS
D19V1, survival
                              sevent
clus2                            0   1
  AMP PEAK 19(12Q15) MUTATED   235  34
  AMP PEAK 19(12Q15) WILD-TYPE 681  94
  AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE 
                         269                          775 
  AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE 
                          34                           94 
$`AMP PEAK 19(12Q15) MUTATED`
TCGA-3C-AAAU TCGA-3C-AALJ TCGA-A1-A0SF TCGA-A1-A0SJ TCGA-A1-A0SN TCGA-A2-A04R 
      129.14        42.81        48.10        13.68        39.32       121.94 
TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A0CM TCGA-A2-A0CS TCGA-A2-A0CX TCGA-A2-A0D0 
       73.84        87.25        24.79        75.55        56.81        67.33 
TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0SW TCGA-A2-A0T0 TCGA-A2-A0T7 
       35.05        34.29        31.82        44.88        17.52        20.75 
TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A0YT TCGA-A2-A1FW TCGA-A2-A25B TCGA-A2-A25E 
       21.90        21.67        23.77        17.36        42.44       105.34 
TCGA-A2-A3XW TCGA-A2-A3Y0 TCGA-A7-A0CD TCGA-A7-A0DC TCGA-A7-A13F TCGA-A7-A26J 
       49.48        38.37        38.30        29.79        25.15        20.61 
TCGA-A7-A2KD TCGA-A7-A425 TCGA-A7-A4SB TCGA-A7-A4SF TCGA-A7-A56D TCGA-A7-A6VX 
       22.32        14.70        13.74        17.92        14.73        10.42 
TCGA-A8-A06Q TCGA-A8-A06R TCGA-A8-A06T TCGA-A8-A06U TCGA-A8-A06Z TCGA-A8-A075 
        1.02        17.98        53.06        29.03         1.02        17.03 
TCGA-A8-A076 TCGA-A8-A079 TCGA-A8-A07G TCGA-A8-A07P TCGA-A8-A07R TCGA-A8-A07W 
       53.98         9.01        18.97        10.98         8.98         9.99 
TCGA-A8-A07Z TCGA-A8-A08B TCGA-A8-A08F TCGA-A8-A08G TCGA-A8-A08J TCGA-A8-A08L 
       45.07        38.01        33.01        19.96        37.05         9.99 
TCGA-A8-A08P TCGA-A8-A08R TCGA-A8-A08S TCGA-A8-A092 TCGA-A8-A09A TCGA-A8-A09C 
       31.00         0.99        33.01        30.97         9.99         1.02 
TCGA-A8-A09D TCGA-A8-A09I TCGA-A8-A09M TCGA-A8-A09Q TCGA-A8-A09X TCGA-A8-A0A1 
       50.04        45.07        33.07        25.02        14.01        12.00 
TCGA-A8-A0A7 TCGA-A8-A0A9 TCGA-AC-A23E TCGA-AC-A23H TCGA-AC-A2FM TCGA-AC-A2FO 
        0.99        27.02         2.37         5.72        26.04        50.70 
TCGA-AC-A3W5 TCGA-AC-A7VB TCGA-AN-A03Y TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AL 
       16.57         8.22         0.33         1.71         9.96         6.51 
TCGA-AN-A0AM TCGA-AN-A0AS TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FT 
        0.16         0.33         5.65         7.96         7.00         7.04 
TCGA-AN-A0FW TCGA-AN-A0FY TCGA-AN-A0FZ TCGA-AN-A0XO TCGA-AO-A03L TCGA-AO-A03N 
        0.36         0.33         0.33        12.33        80.28        66.77 
TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J7 TCGA-AO-A0J9 
       81.63        95.70        32.78        21.40        20.32        53.03 
TCGA-AO-A0JD TCGA-AO-A0JM TCGA-AO-A12E TCGA-AO-A1KQ TCGA-AO-A1KS TCGA-AQ-A0Y5 
       72.00        71.80        57.30        61.87         0.53         5.65 
TCGA-AQ-A54O TCGA-AR-A0TP TCGA-AR-A0TQ TCGA-AR-A0TR TCGA-AR-A0TT TCGA-AR-A0TW 
       32.91       111.32        73.64         5.26        86.66        98.93 
TCGA-AR-A0TX TCGA-AR-A0U2 TCGA-AR-A1AK TCGA-AR-A1AV TCGA-AR-A24M TCGA-AR-A24V 
       64.83        83.87        51.25        61.28        96.89        85.35 
TCGA-AR-A24W TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A256 TCGA-AR-A2LN TCGA-AR-A2LR 
       50.96        79.00        89.00        93.83        38.17        20.38 
TCGA-AR-A5QM TCGA-B6-A0IJ TCGA-B6-A0IO TCGA-B6-A0RH TCGA-B6-A0RO TCGA-B6-A0WV 
       54.74       176.98       110.14       189.01       162.05        79.63 
TCGA-B6-A0WX TCGA-B6-A0WY TCGA-B6-A1KC TCGA-B6-A1KI TCGA-B6-A408 TCGA-BH-A0AU 
       21.47       113.79        43.59        73.51        68.12        24.53 
TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0BA TCGA-BH-A0BG TCGA-BH-A0BP 
       39.55        39.16        48.36        37.22        24.85        48.69 
TCGA-BH-A0BT TCGA-BH-A0BW TCGA-BH-A0C1 TCGA-BH-A0DD TCGA-BH-A0DQ TCGA-BH-A0DX 
       45.57        11.67        44.02        45.83         3.22        47.41 
TCGA-BH-A0E2 TCGA-BH-A0E7 TCGA-BH-A0EB TCGA-BH-A0GY TCGA-BH-A0H7 TCGA-BH-A0H9 
       14.30        44.81        24.49        30.35        23.08        41.00 
TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18N TCGA-BH-A18R 
       27.25        50.79        90.84        26.66        37.74        37.55 
TCGA-BH-A1EO TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1F6 TCGA-BH-A1FC 
       91.99        42.28        12.00        55.69        97.48       114.15 
TCGA-BH-A1FM TCGA-BH-A208 TCGA-BH-A5J0 TCGA-BH-A6R8 TCGA-BH-A8FZ TCGA-C8-A12L 
       45.63        57.83        23.51         9.63        18.87        11.93 
TCGA-C8-A12M TCGA-C8-A12O TCGA-C8-A12U TCGA-C8-A12W TCGA-C8-A12Z TCGA-C8-A130 
       11.77        12.66        12.66        12.66         0.39         3.16 
TCGA-C8-A138 TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HK TCGA-C8-A1HN TCGA-C8-A26Z 
        4.08        11.34        11.28        12.03         3.25         8.28 
TCGA-C8-A278 TCGA-D8-A13Y TCGA-D8-A13Z TCGA-D8-A140 TCGA-D8-A1J8 TCGA-D8-A1JC 
        9.50        11.90        20.88        13.25        14.17        15.78 
TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JP TCGA-D8-A1X9 TCGA-D8-A1XD TCGA-D8-A1XL 
       18.15        18.90        21.01        23.90        17.16        19.92 
TCGA-D8-A1XU TCGA-D8-A1XY TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A27R TCGA-D8-A27V 
       12.99        16.54        15.32        15.52        10.09        12.53 
TCGA-D8-A27W TCGA-D8-A3Z6 TCGA-E2-A107 TCGA-E2-A109 TCGA-E2-A10B TCGA-E2-A10C 
       12.26        18.51        34.42        46.59        37.51        40.11 
TCGA-E2-A14O TCGA-E2-A14T TCGA-E2-A14V TCGA-E2-A14W TCGA-E2-A152 TCGA-E2-A15A 
       44.68        33.30        34.26        32.02        27.12        23.34 
TCGA-E2-A15G TCGA-E2-A15O TCGA-E2-A15S TCGA-E2-A1B5 TCGA-E2-A1IH TCGA-E2-A1II 
       18.21        13.02        14.07        32.35        33.73        33.70 
TCGA-E2-A1IO TCGA-E2-A1L8 TCGA-E2-A1LA TCGA-E2-A2P5 TCGA-E2-A56Z TCGA-E2-A574 
       20.98        39.62        24.59        16.93         8.28        26.56 
TCGA-E2-A9RU TCGA-E9-A1N6 TCGA-E9-A1N9 TCGA-E9-A1NF TCGA-E9-A1NI TCGA-E9-A1R6 
       12.85        13.48        13.12        35.24         9.86         2.76 
TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RF TCGA-E9-A1RG TCGA-E9-A22D TCGA-E9-A22G 
       32.09        40.24         6.58        21.27        41.03        23.51 
TCGA-E9-A244 TCGA-E9-A247 TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A54Y TCGA-E9-A5UO 
        0.69        27.22         0.72        29.72        23.84        13.81 
TCGA-EW-A1J6 TCGA-EW-A1OW TCGA-EW-A1OY TCGA-EW-A1P5 TCGA-EW-A1PD TCGA-EW-A2FV 
       28.77        22.82        29.85        23.11        13.94        25.91 
TCGA-GI-A2C9 TCGA-GM-A2D9 TCGA-GM-A2DH TCGA-GM-A2DK TCGA-HN-A2NL TCGA-LD-A66U 
      109.87        59.57        72.10        86.96         2.60        21.24 
TCGA-LD-A7W5 TCGA-LL-A440 TCGA-LL-A5YM TCGA-LL-A6FP TCGA-LL-A6FQ TCGA-LL-A740 
        7.10        24.95        15.32        22.26         2.63        14.50 
TCGA-LL-A7SZ TCGA-LL-A7T0 TCGA-OL-A5RV TCGA-OL-A5RW TCGA-OL-A66O TCGA-S3-A6ZF 
       14.70        12.36        34.92        36.36        17.36        16.50 
TCGA-S3-A6ZG TCGA-S3-AA10 TCGA-UL-AAZ6 TCGA-XX-A899 TCGA-Z7-A8R5 
       13.12        15.39        17.03        15.35       108.07 

$`AMP PEAK 19(12Q15) WILD-TYPE`
TCGA-3C-AALI TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT0 TCGA-5L-AAT1 TCGA-5T-A9QA 
      131.67        40.14        11.44        48.56        48.36         9.96 
TCGA-A1-A0SB TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI 
        8.52        14.37        43.43        14.27        47.24        20.88 
TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SO TCGA-A1-A0SP TCGA-A1-A0SQ TCGA-A2-A04N 
       31.79         7.96        28.01        19.20        18.21       104.81 
TCGA-A2-A04P TCGA-A2-A04Q TCGA-A2-A04V TCGA-A2-A04W TCGA-A2-A04X TCGA-A2-A04Y 
       18.02        78.41        63.12       101.98        55.43        36.13 
TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CQ TCGA-A2-A0CR 
      136.73        99.12       114.81        92.48        88.60       107.93 
TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0D1 TCGA-A2-A0D2 
       75.25         5.19        98.99       107.93        34.55        33.76 
TCGA-A2-A0D3 TCGA-A2-A0D4 TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP 
       61.58        25.22       101.72       134.40        80.28       107.61 
TCGA-A2-A0EQ TCGA-A2-A0ER TCGA-A2-A0ES TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0EY 
       79.76        74.40        72.00        61.94        24.72        63.29 
TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SX TCGA-A2-A0SY TCGA-A2-A0T1 
       99.19        54.64        27.12        50.43        44.28        17.13 
TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T4 TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0YC 
        8.38        49.84        20.52        17.46        18.90        32.55 
TCGA-A2-A0YD TCGA-A2-A0YE TCGA-A2-A0YF TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A0YK 
       25.28        18.21        50.47        49.48        18.61        19.33 
TCGA-A2-A0YL TCGA-A2-A0YM TCGA-A2-A1FV TCGA-A2-A1FX TCGA-A2-A1FZ TCGA-A2-A1G0 
       48.46        31.73        23.47        60.72        22.45        20.25 
TCGA-A2-A1G1 TCGA-A2-A1G4 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25A TCGA-A2-A25C 
       19.20        19.56        16.47        52.47       107.70        17.19 
TCGA-A2-A25D TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD TCGA-A2-A3XS TCGA-A2-A3XT 
       18.15        10.59        20.88        39.65        33.93        83.01 
TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XX TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A4RW 
       29.98        32.75        47.31        34.98        50.37         7.30 
TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A2-A4S3 
       24.39        21.30        23.21        26.96        21.14        21.90 
TCGA-A7-A0CE TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0CJ TCGA-A7-A0D9 TCGA-A7-A0DA 
       35.31        34.29        35.47        30.61        37.45        35.67 
TCGA-A7-A0DB TCGA-A7-A13D TCGA-A7-A13E TCGA-A7-A13G TCGA-A7-A13H TCGA-A7-A26E 
       33.11        31.73        20.19        23.61        29.56        31.36 
TCGA-A7-A26F TCGA-A7-A26G TCGA-A7-A26H TCGA-A7-A26I TCGA-A7-A3IY TCGA-A7-A3IZ 
       24.26        23.74        23.80        21.73        11.34        10.59 
TCGA-A7-A3J0 TCGA-A7-A3J1 TCGA-A7-A3RF TCGA-A7-A426 TCGA-A7-A4SA TCGA-A7-A4SD 
       10.29        11.28        13.41        11.97        14.93        14.50 
TCGA-A7-A4SE TCGA-A7-A5ZV TCGA-A7-A5ZW TCGA-A7-A5ZX TCGA-A7-A6VV TCGA-A7-A6VW 
       21.17        12.10        10.72        11.05        10.29         9.37 
TCGA-A7-A6VY TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06X TCGA-A8-A06Y TCGA-A8-A07B 
        8.75        13.02        13.02        31.00        26.01        43.00 
TCGA-A8-A07E TCGA-A8-A07F TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07L TCGA-A8-A07O 
       19.99        18.97        14.01        12.00        32.05         9.99 
TCGA-A8-A07S TCGA-A8-A07U TCGA-A8-A082 TCGA-A8-A084 TCGA-A8-A085 TCGA-A8-A086 
        7.99        24.99        18.05        15.06        36.95        13.02 
TCGA-A8-A08A TCGA-A8-A08C TCGA-A8-A08I TCGA-A8-A08O TCGA-A8-A08T TCGA-A8-A08X 
        0.99        28.96        12.00        31.00       112.08        43.00 
TCGA-A8-A08Z TCGA-A8-A091 TCGA-A8-A093 TCGA-A8-A095 TCGA-A8-A097 TCGA-A8-A099 
       40.01        33.01        17.95        41.98        12.00         9.99 
TCGA-A8-A09B TCGA-A8-A09E TCGA-A8-A09K TCGA-A8-A09N TCGA-A8-A09R TCGA-A8-A09T 
       12.00        49.05        29.98         1.02         8.98        19.04 
TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0AB 
       15.02         0.99        19.04        13.02        21.04        17.03 
TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23G TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM 
       38.04         0.95        10.85         1.48        38.53        99.35 
TCGA-AC-A2FB TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2QH TCGA-AC-A2QI 
       40.57        55.43        36.99        38.79        33.04         0.92 
TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3TN 
        2.27        32.45        16.31        14.83        22.19        14.99 
TCGA-AC-A3W6 TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A5XS TCGA-AC-A62V TCGA-AC-A62X 
       19.79        23.24        24.79         1.55        11.44        13.71 
TCGA-AC-A62Y TCGA-AC-A6IV TCGA-AC-A6IW TCGA-AC-A6IX TCGA-AC-A6NO TCGA-AC-A7VC 
       17.42        18.67        13.58        12.26         1.68         0.03 
TCGA-AC-A8OP TCGA-AC-A8OQ TCGA-AC-A8OR TCGA-AC-A8OS TCGA-AN-A03X TCGA-AN-A041 
       20.19         1.12         1.32         2.30         0.33         0.23 
TCGA-AN-A046 TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A0AK TCGA-AN-A0AR 
        0.33         0.62         2.96         1.78         7.36         0.33 
TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0FL TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FV 
        0.33         6.44         7.59         7.17         6.28         0.33 
TCGA-AN-A0FX TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS 
        0.33         0.33         0.33         0.30         0.33         0.33 
TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03M TCGA-AO-A03R 
        0.33         0.33         5.33         5.59        61.35        68.75 
TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J4 TCGA-AO-A0J5 TCGA-AO-A0J6 
       47.87        58.95        29.13        52.18        26.04        37.48 
TCGA-AO-A0J8 TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JC TCGA-AO-A0JE TCGA-AO-A0JF 
       22.36        21.53        50.70        50.86        76.77        21.37 
TCGA-AO-A0JG TCGA-AO-A0JI TCGA-AO-A0JJ TCGA-AO-A0JL TCGA-AO-A124 TCGA-AO-A125 
       26.24        50.24        62.04        55.33       102.58        99.25 
TCGA-AO-A126 TCGA-AO-A128 TCGA-AO-A129 TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12D 
      108.72       106.78       108.03        90.58        98.27        64.04 
TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KR 
       48.36        41.62        28.37        14.73        82.62        70.39 
TCGA-AO-A1KT TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A1H2 TCGA-AQ-A1H3 
       17.79        24.79        26.93       130.09        15.62        32.52 
TCGA-AQ-A54N TCGA-AQ-A7U7 TCGA-AR-A0TS TCGA-AR-A0TV TCGA-AR-A0TY TCGA-AR-A0TZ 
        2.56        19.20        74.79        42.35        55.86       107.24 
TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A0U3 TCGA-AR-A0U4 TCGA-AR-A1AH TCGA-AR-A1AI 
       65.36       101.95       114.02        85.97        75.55        61.84 
TCGA-AR-A1AJ TCGA-AR-A1AL TCGA-AR-A1AM TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AP 
       52.77        48.82        76.11        43.73        43.56        39.98 
TCGA-AR-A1AQ TCGA-AR-A1AR TCGA-AR-A1AS TCGA-AR-A1AU TCGA-AR-A1AW TCGA-AR-A1AX 
       43.07        17.23        37.81        76.21        63.62        62.14 
TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24K TCGA-AR-A24L TCGA-AR-A24N TCGA-AR-A24O 
       33.73       160.90        50.89        94.22        78.51        84.20 
TCGA-AR-A24P TCGA-AR-A24Q TCGA-AR-A24R TCGA-AR-A24S TCGA-AR-A24T TCGA-AR-A24U 
        2.76       104.28        87.22        97.84        76.01        53.36 
TCGA-AR-A24X TCGA-AR-A251 TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A255 TCGA-AR-A2LE 
       83.77        78.48        73.18        72.76        58.92       143.21 
TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LL TCGA-AR-A2LM TCGA-AR-A2LO 
       20.25        62.86        54.21        66.15        52.11        39.39 
TCGA-AR-A2LQ TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I2 
       40.54        16.04        20.45        10.59        77.62       143.38 
TCGA-B6-A0I5 TCGA-B6-A0I9 TCGA-B6-A0IA TCGA-B6-A0IB TCGA-B6-A0IC TCGA-B6-A0IE 
      149.59        12.13       220.90       129.57        50.70        65.72 
TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IP 
      146.50       112.37        18.77       126.12        84.59       110.93 
TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RI TCGA-B6-A0RL TCGA-B6-A0RM 
      140.88       211.56        68.45       234.28        81.17        78.02 
TCGA-B6-A0RN TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RS TCGA-B6-A0RT TCGA-B6-A0RU 
      172.96       102.77       140.48       100.70        89.46       131.21 
TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WW TCGA-B6-A0WZ TCGA-B6-A0X0 
      157.41        97.48       188.68        18.35       129.57       129.70 
TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KF TCGA-B6-A1KN 
      186.48        28.27        68.94        58.88       101.52       139.17 
TCGA-B6-A2IU TCGA-B6-A401 TCGA-B6-A402 TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AV 
      170.17        85.35        74.99       103.63        71.15        59.84 
TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B2 TCGA-BH-A0B6 
       20.45        25.55        28.50        46.95        40.83        56.94 
TCGA-BH-A0B7 TCGA-BH-A0B9 TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BF TCGA-BH-A0BJ 
       56.98        51.68        32.02        18.21        25.71        21.70 
TCGA-BH-A0BL TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS 
       44.05        61.68        35.67        27.19        53.69        53.95 
TCGA-BH-A0BV TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DE 
       49.94        49.05        41.75        48.13        42.90        31.17 
TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DO 
       23.44        38.01        22.13        13.91        48.23        17.26 
TCGA-BH-A0DP TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DZ TCGA-BH-A0E0 
       15.65         2.56        38.47        67.86        16.27         4.41 
TCGA-BH-A0E1 TCGA-BH-A0E6 TCGA-BH-A0E9 TCGA-BH-A0EA TCGA-BH-A0EE TCGA-BH-A0EI 
       15.68         9.63        46.19        32.58        31.00        24.43 
TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0HA 
       10.78        15.16        37.78        35.51        24.56        52.96 
TCGA-BH-A0HB TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ 
       26.50        20.38         5.85         2.50        13.61        36.85 
TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 
       12.89        51.32         5.59        23.93        24.95        42.35 
TCGA-BH-A0W7 TCGA-BH-A0WA TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J 
       44.81        23.05         8.81         2.01         7.23        20.12 
TCGA-BH-A18M TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18S TCGA-BH-A18T TCGA-BH-A18U 
       72.56        30.28        55.63        66.05         7.36        51.39 
TCGA-BH-A18V TCGA-BH-A1EN TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EX TCGA-BH-A1EY 
       51.16        69.93       113.82        82.85        49.58        17.69 
TCGA-BH-A1F0 TCGA-BH-A1F2 TCGA-BH-A1F5 TCGA-BH-A1F8 TCGA-BH-A1FB TCGA-BH-A1FD 
       25.81        31.53        89.16        24.66       120.62        33.17 
TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FN 
       74.73       122.89        36.92        63.35        55.00        72.07 
TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A203 TCGA-BH-A204 
      144.59        72.07        28.14        26.14        38.60        83.31 
TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U 
      130.16        10.65         6.44        20.12        10.52       109.28 
TCGA-BH-A42V TCGA-BH-A5IZ TCGA-BH-A6R9 TCGA-BH-A8FY TCGA-BH-A8G0 TCGA-BH-AB28 
        8.94        18.64         5.26         9.70        21.76         9.44 
TCGA-C8-A12N TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12V TCGA-C8-A12X TCGA-C8-A131 
       11.77        11.77        12.66        12.66        12.66         2.24 
TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A135 TCGA-C8-A137 TCGA-C8-A1HE TCGA-C8-A1HF 
        1.87         1.12         1.05         4.11        12.33        10.92 
TCGA-C8-A1HJ TCGA-C8-A1HL TCGA-C8-A1HM TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A26X 
        0.16        10.42         2.30         0.30         0.23         0.36 
TCGA-C8-A26Y TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A275 TCGA-C8-A27A TCGA-C8-A27B 
        0.43         9.67         9.53         0.03        12.20         0.99 
TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-C8-A8HP TCGA-C8-A8HQ TCGA-C8-A8HR TCGA-C8-A9FZ 
        0.03         0.23        13.02        12.49        13.41        19.46 
TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A145 TCGA-D8-A146 TCGA-D8-A147 
       20.58        13.97        14.17        13.48        21.14        19.20 
TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JH 
       17.49        16.50        18.71        12.03        12.03        14.01 
TCGA-D8-A1JI TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JN 
       18.97        20.09        20.12        20.09        19.40        20.38 
TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X7 
       12.20        13.32        14.70        18.58        17.79        16.73 
TCGA-D8-A1X8 TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XF TCGA-D8-A1XG 
       25.74        27.58        18.15        12.39        15.22        14.73 
TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XQ TCGA-D8-A1XR 
       21.83        14.50        17.69        15.55        16.41        15.85 
TCGA-D8-A1XS TCGA-D8-A1XT TCGA-D8-A1XV TCGA-D8-A1XW TCGA-D8-A1Y1 TCGA-D8-A1Y2 
       16.31         6.35        15.16        12.66         9.93        14.24 
TCGA-D8-A1Y3 TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27I 
       14.14        17.42        16.04        13.45        13.05        14.43 
TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27T 
        9.44        16.41        13.48         4.80         0.76        13.08 
TCGA-D8-A3Z5 TCGA-D8-A4Z1 TCGA-D8-A73U TCGA-D8-A73W TCGA-D8-A73X TCGA-E2-A105 
       33.37        21.67        16.18         8.02        12.10        43.00 
TCGA-E2-A108 TCGA-E2-A10A TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14P 
       27.52        40.41        28.44        28.87        47.15        40.96 
TCGA-E2-A14Q TCGA-E2-A14R TCGA-E2-A14S TCGA-E2-A14U TCGA-E2-A14X TCGA-E2-A14Y 
       38.24        38.60        33.17        43.33        31.96        28.60 
TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A153 TCGA-E2-A154 TCGA-E2-A155 TCGA-E2-A156 
       18.51        25.41        23.24        19.43        21.04        23.87 
TCGA-E2-A158 TCGA-E2-A159 TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15E TCGA-E2-A15F 
       14.79        25.05        22.82        17.29        20.71        21.63 
TCGA-E2-A15H TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M 
       12.92        17.42        19.40         9.04        20.58        11.05 
TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B1 
       19.56        17.06        14.99        60.53        53.62        53.03 
TCGA-E2-A1B4 TCGA-E2-A1B6 TCGA-E2-A1BC TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF 
       33.01        28.50        16.47        17.10        38.30        37.41 
TCGA-E2-A1IG TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IU 
       32.78        28.44        22.65         3.88        22.19        11.08 
TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L9 TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LG 
       54.18        27.42        19.66        40.47        28.90        18.87 
TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A1LL TCGA-E2-A2P6 TCGA-E2-A3DX 
      106.75       102.61         8.75        43.04         5.52        15.72 
TCGA-E2-A570 TCGA-E2-A573 TCGA-E2-A576 TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 
       30.61        34.92        34.29        34.82        32.88        36.82 
TCGA-E9-A1N8 TCGA-E9-A1NA TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NG 
       12.00        36.56        39.55        12.59        35.77        25.84 
TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R5 
       11.90        28.27        34.95         2.56         6.12         3.02 
TCGA-E9-A1R7 TCGA-E9-A1RA TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RH TCGA-E9-A1RI 
       21.21        32.09         1.12        34.65        34.59        35.64 
TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22B 
       34.13        32.05        12.53        13.32        39.09        22.75 
TCGA-E9-A22E TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A 
       12.89        20.71        17.06         1.94         7.13        24.56 
TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3QA TCGA-E9-A3X8 TCGA-E9-A54X 
        0.76        26.07        18.41        30.18        15.72        12.33 
TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UP TCGA-E9-A6HE TCGA-EW-A1IW TCGA-EW-A1IX 
       14.70         0.79        14.40        15.39        12.20        39.72 
TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J5 
        8.48        18.21        18.90        13.25        16.57        15.68 
TCGA-EW-A1OV TCGA-EW-A1OX TCGA-EW-A1OZ TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P3 
       25.94        29.95        40.41        41.13        39.78        52.96 
TCGA-EW-A1P4 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1P8 TCGA-EW-A1PA TCGA-EW-A1PB 
       29.82        18.48        30.08         7.86        18.90        19.99 
TCGA-EW-A1PC TCGA-EW-A1PE TCGA-EW-A1PF TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FR 
        6.15        10.52        14.43        34.55        19.96        55.00 
TCGA-EW-A2FS TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A3U0 TCGA-EW-A423 TCGA-EW-A424 
       52.73        22.09        34.03        17.49        10.16        23.51 
TCGA-GI-A2C8 TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DC TCGA-GM-A2DD TCGA-GM-A2DF 
        7.40       216.76        79.10        83.34        75.02        70.85 
TCGA-GM-A2DI TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A2DO TCGA-GM-A3NW 
       85.15       115.69       106.06       101.62        85.35       110.50 
TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XL TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV 
       38.20        43.73        69.30        66.38        72.03        13.55 
TCGA-GM-A5PX TCGA-HN-A2OB TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LD-A74U TCGA-LD-A7W6 
       18.12        62.43        11.84        11.57        13.22        13.28 
TCGA-LD-A9QF TCGA-LL-A441 TCGA-LL-A442 TCGA-LL-A50Y TCGA-LL-A5YL TCGA-LL-A5YN 
       10.62        11.44        10.95        25.05        17.06        14.70 
TCGA-LL-A5YO TCGA-LL-A5YP TCGA-LL-A6FR TCGA-LL-A73Y TCGA-LL-A73Z TCGA-LL-A8F5 
       14.47        14.79        16.08        15.68         7.46        14.73 
TCGA-LL-A9Q3 TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5D7 
       14.07        27.91        22.39         2.10        36.30        58.52 
TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RU TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5RZ 
       31.99        58.62        40.08        28.87        24.72        22.32 
TCGA-OL-A5S0 TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66K TCGA-OL-A66L 
       20.38        26.70        23.47        65.62        41.92        42.77 
TCGA-OL-A66N TCGA-OL-A66P TCGA-OL-A6VO TCGA-OL-A6VQ TCGA-OL-A6VR TCGA-OL-A97C 
       26.04        14.07        28.21        19.73        40.11         8.91 
TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE TCGA-PL-A8LX TCGA-PL-A8LY TCGA-PL-A8LZ 
       47.01        64.21        86.96         0.16         0.26         9.93 
TCGA-S3-A6ZH TCGA-S3-AA0Z TCGA-S3-AA11 TCGA-S3-AA12 TCGA-S3-AA14 TCGA-S3-AA15 
       16.93        16.80        13.84        15.35        14.96        13.84 
TCGA-S3-AA17 TCGA-UU-A93S TCGA-W8-A86G TCGA-WT-AB41 TCGA-WT-AB44 TCGA-XX-A89A 
       13.94         3.81        11.41        52.96        29.03        16.04 
TCGA-Z7-A8R6 
      107.05 

  AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE 
                        0.16                         0.03 
  AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE 
                      189.01                       234.28 
  AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE 
                       24.49                        24.56 
[1] "0.2 - 189.0 (24.5)" "0.0 - 234.3 (24.6)"
[1] "hr=" "1.2"
D19V2, continuous
                              vv
clus                           STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  AMP PEAK 19(12Q15) MUTATED        20       16        1        0        87
  AMP PEAK 19(12Q15) WILD-TYPE      69       65        7        3       266
                              vv
clus                           STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  AMP PEAK 19(12Q15) MUTATED          59         0         51         11
  AMP PEAK 19(12Q15) WILD-TYPE       186         2         99         18
                              vv
clus                           STAGE IIIC STAGE IV STAGE TIS STAGE X
  AMP PEAK 19(12Q15) MUTATED           19        5         0       3
  AMP PEAK 19(12Q15) WILD-TYPE         44       15         1      10
D19V3, multiclass
            clus
vv           AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  STAGE I                            20                           69
  STAGE IA                           16                           65
  STAGE IB                            1                            7
  STAGE II                            0                            3
  STAGE IIA                          87                          266
  STAGE IIB                          59                          186
  STAGE III                           0                            2
  STAGE IIIA                         51                           99
  STAGE IIIB                         11                           18
  STAGE IIIC                         19                           44
  STAGE IV                            5                           15
  STAGE TIS                           0                            1
  STAGE X                             3                           10
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                            T1  T2  T3  T4
  AMP PEAK 19(12Q15) MUTATED    55 173  30  15
  AMP PEAK 19(12Q15) WILD-TYPE 217 443 100  25
D19V4, multiclass
    clus
vv   AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  T1                         55                          217
  T2                        173                          443
  T3                         30                          100
  T4                         15                           25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                            N0  N1  N2  N3
  AMP PEAK 19(12Q15) MUTATED   113  88  44  22
  AMP PEAK 19(12Q15) WILD-TYPE 388 262  73  53
D19V5, multiclass
    clus
vv   AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  N0                        113                          388
  N1                         88                          262
  N2                         44                           73
  N3                         22                           53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D19V6, binary
                              cls
clus                             0   1
  AMP PEAK 19(12Q15) MUTATED   237   5
  AMP PEAK 19(12Q15) WILD-TYPE 642  16
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 19(12Q15) MUTATED    237    5
  AMP PEAK 19(12Q15) WILD-TYPE  642   16
   clus
vv  AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  0                        237                          642
  1                          5                           16
[1] 2 2
[1] FALSE
D19V7, binary
                              cls
clus                             0   1
  AMP PEAK 19(12Q15) MUTATED   267   7
  AMP PEAK 19(12Q15) WILD-TYPE 784   4
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 19(12Q15) MUTATED    267    7
  AMP PEAK 19(12Q15) WILD-TYPE  784    4
        clus
vv       AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  FEMALE                        267                          784
  MALE                            7                            4
[1] 2 2
[1] FALSE
                              vv
clus                           INFILTRATING CARCINOMA NOS
  AMP PEAK 19(12Q15) MUTATED                            0
  AMP PEAK 19(12Q15) WILD-TYPE                          1
                              vv
clus                           INFILTRATING DUCTAL CARCINOMA
  AMP PEAK 19(12Q15) MUTATED                             222
  AMP PEAK 19(12Q15) WILD-TYPE                           541
                              vv
clus                           INFILTRATING LOBULAR CARCINOMA
  AMP PEAK 19(12Q15) MUTATED                               33
  AMP PEAK 19(12Q15) WILD-TYPE                            159
                              vv
clus                           MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  AMP PEAK 19(12Q15) MUTATED                     1                     0
  AMP PEAK 19(12Q15) WILD-TYPE                   5                     4
                              vv
clus                           MIXED HISTOLOGY (PLEASE SPECIFY)
  AMP PEAK 19(12Q15) MUTATED                                  9
  AMP PEAK 19(12Q15) WILD-TYPE                               21
                              vv
clus                           MUCINOUS CARCINOMA OTHER  SPECIFY
  AMP PEAK 19(12Q15) MUTATED                    2              7
  AMP PEAK 19(12Q15) WILD-TYPE                 15             41
D19V8, multiclass
                                  clus
vv                                 AMP PEAK 19(12Q15) MUTATED
  INFILTRATING CARCINOMA NOS                                0
  INFILTRATING DUCTAL CARCINOMA                           222
  INFILTRATING LOBULAR CARCINOMA                           33
  MEDULLARY CARCINOMA                                       1
  METAPLASTIC CARCINOMA                                     0
  MIXED HISTOLOGY (PLEASE SPECIFY)                          9
  MUCINOUS CARCINOMA                                        2
  OTHER  SPECIFY                                            7
                                  clus
vv                                 AMP PEAK 19(12Q15) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                  1
  INFILTRATING DUCTAL CARCINOMA                             541
  INFILTRATING LOBULAR CARCINOMA                            159
  MEDULLARY CARCINOMA                                         5
  METAPLASTIC CARCINOMA                                       4
  MIXED HISTOLOGY (PLEASE SPECIFY)                           21
  MUCINOUS CARCINOMA                                         15
  OTHER  SPECIFY                                             41
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D19V9, binary
                              cls
clus                             0   1
  AMP PEAK 19(12Q15) MUTATED    73 201
  AMP PEAK 19(12Q15) WILD-TYPE 215 573
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 19(12Q15) MUTATED     73  201
  AMP PEAK 19(12Q15) WILD-TYPE  215  573
     clus
vv    AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  NO                          73                          215
  YES                        201                          573
[1] 2 2
[1] FALSE
D19V10, continuous
                              vv
clus                           AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK 19(12Q15) MUTATED                                  0    16
  AMP PEAK 19(12Q15) WILD-TYPE                                1    44
                              vv
clus                           BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 19(12Q15) MUTATED                          49   170
  AMP PEAK 19(12Q15) WILD-TYPE                       121   566
D19V11, multiclass
                                  clus
vv                                 AMP PEAK 19(12Q15) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                          0
  ASIAN                                                    16
  BLACK OR AFRICAN AMERICAN                                49
  WHITE                                                   170
                                  clus
vv                                 AMP PEAK 19(12Q15) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                            1
  ASIAN                                                      44
  BLACK OR AFRICAN AMERICAN                                 121
  WHITE                                                     566
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D19V12, binary
                              cls
clus                             0   1
  AMP PEAK 19(12Q15) MUTATED     6 211
  AMP PEAK 19(12Q15) WILD-TYPE  32 647
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 19(12Q15) MUTATED      6  211
  AMP PEAK 19(12Q15) WILD-TYPE   32  647
                        clus
vv                       AMP PEAK 19(12Q15) MUTATED
  HISPANIC OR LATINO                              6
  NOT HISPANIC OR LATINO                        211
                        clus
vv                       AMP PEAK 19(12Q15) WILD-TYPE
  HISPANIC OR LATINO                               32
  NOT HISPANIC OR LATINO                          647
[1] 2 2
[1] FALSE

Clustering(20) Variable = AMP PEAK 20(13Q34) MUTATION ANALYSIS
D20V1, survival
                              sevent
clus2                            0   1
  AMP PEAK 20(13Q34) MUTATED   152  21
  AMP PEAK 20(13Q34) WILD-TYPE 764 107
  AMP PEAK 20(13Q34) MUTATED AMP PEAK 20(13Q34) WILD-TYPE 
                         173                          871 
  AMP PEAK 20(13Q34) MUTATED AMP PEAK 20(13Q34) WILD-TYPE 
                          21                          107 
$`AMP PEAK 20(13Q34) MUTATED`
TCGA-A1-A0SJ TCGA-A1-A0SK TCGA-A1-A0SO TCGA-A2-A04T TCGA-A2-A0D0 TCGA-A2-A0D2 
       13.68        31.79        28.01        73.84        67.33        33.76 
TCGA-A2-A0EQ TCGA-A2-A0ET TCGA-A2-A0EY TCGA-A2-A0ST TCGA-A2-A0SX TCGA-A2-A0T0 
       79.76        35.05        63.29        99.19        50.43        17.52 
TCGA-A2-A0T7 TCGA-A2-A0YJ TCGA-A2-A0YM TCGA-A2-A1G1 TCGA-A2-A3XS TCGA-A2-A3XT 
       20.75        18.61        31.73        19.20        33.93        83.01 
TCGA-A2-A3Y0 TCGA-A7-A0CE TCGA-A7-A0DA TCGA-A7-A13D TCGA-A7-A26F TCGA-A7-A3J0 
       38.37        35.31        35.67        31.73        24.26        10.29 
TCGA-A7-A4SD TCGA-A8-A07I TCGA-A8-A07R TCGA-A8-A08G TCGA-A8-A08I TCGA-A8-A08J 
       14.50        14.01         8.98        19.96        12.00        37.05 
TCGA-A8-A08L TCGA-A8-A091 TCGA-A8-A095 TCGA-A8-A097 TCGA-A8-A09C TCGA-A8-A09M 
        9.99        33.01        41.98        12.00         1.02        33.07 
TCGA-A8-A0AB TCGA-AC-A2B8 TCGA-AC-A2FM TCGA-AC-A3OD TCGA-AC-A3W5 TCGA-AC-A8OP 
       17.03         1.48        26.04        14.83        16.57        20.19 
TCGA-AN-A03Y TCGA-AN-A041 TCGA-AN-A04C TCGA-AN-A04D TCGA-AN-A0AL TCGA-AN-A0AM 
        0.33         0.23         1.78         1.71         6.51         0.16 
TCGA-AN-A0AR TCGA-AN-A0FJ TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FX 
        0.33         7.96         7.04         0.33         0.36         0.33 
TCGA-AN-A0FY TCGA-AN-A0FZ TCGA-AN-A0XO TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AO-A03U 
        0.33         0.33        12.33         0.33         0.33        58.95 
TCGA-AO-A0J7 TCGA-AO-A0JB TCGA-AO-A124 TCGA-AO-A129 TCGA-AO-A12A TCGA-AO-A12B 
       20.32        50.70       102.58       108.03        90.58        98.27 
TCGA-AO-A12D TCGA-AQ-A04J TCGA-AR-A0TP TCGA-AR-A0TT TCGA-AR-A0U3 TCGA-AR-A1AN 
       64.04        26.93       111.32        86.66       114.02        43.73 
TCGA-AR-A1AW TCGA-AR-A24H TCGA-AR-A24U TCGA-AR-A256 TCGA-AR-A2LR TCGA-B6-A0IB 
       63.62       160.90        53.36        93.83        20.38       129.57 
TCGA-B6-A0IJ TCGA-B6-A0IO TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RO TCGA-B6-A0RS 
      176.98       110.14       211.56        68.45       162.05       100.70 
TCGA-B6-A0RU TCGA-B6-A0WV TCGA-B6-A0WY TCGA-BH-A0AV TCGA-BH-A0B9 TCGA-BH-A0BT 
      131.21        79.63       113.79        59.84        51.68        45.57 
TCGA-BH-A0C7 TCGA-BH-A0E0 TCGA-BH-A0E2 TCGA-BH-A0EB TCGA-BH-A0HQ TCGA-BH-A18N 
       42.90         4.41        14.30        24.49        36.85        37.74 
TCGA-BH-A18Q TCGA-BH-A18V TCGA-BH-A1EX TCGA-BH-A1FM TCGA-BH-A1FN TCGA-BH-A208 
       55.63        51.16        49.58        45.63        72.07        57.83 
TCGA-BH-A5IZ TCGA-BH-A6R9 TCGA-C8-A12L TCGA-C8-A12M TCGA-C8-A131 TCGA-C8-A134 
       18.64         5.26        11.93        11.77         2.24         1.12 
TCGA-C8-A26Y TCGA-C8-A275 TCGA-C8-A27B TCGA-D8-A141 TCGA-D8-A143 TCGA-D8-A1JF 
        0.43         0.03         0.99        20.58        14.17        12.03 
TCGA-D8-A1JJ TCGA-D8-A1JL TCGA-D8-A1XF TCGA-D8-A1XJ TCGA-D8-A1XQ TCGA-D8-A1XW 
       20.09        20.09        15.22        21.83        16.41        12.66 
TCGA-D8-A27H TCGA-D8-A27M TCGA-D8-A27R TCGA-D8-A27W TCGA-E2-A14P TCGA-E2-A14R 
       13.05        13.48        10.09        12.26        40.96        38.60 
TCGA-E2-A14T TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A154 TCGA-E2-A158 TCGA-E2-A15E 
       33.30        31.96        28.60        19.43        14.79        20.71 
TCGA-E2-A15I TCGA-E2-A1BD TCGA-E2-A1L9 TCGA-E2-A1LE TCGA-E2-A1LG TCGA-E2-A1LH 
       17.42        17.10        19.66        28.90        18.87       106.75 
TCGA-E2-A1LI TCGA-E2-A56Z TCGA-E2-A573 TCGA-E2-A574 TCGA-E9-A1N8 TCGA-E9-A1ND 
      102.61         8.28        34.92        26.56        12.00        12.59 
TCGA-E9-A1NF TCGA-E9-A1NI TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1RF TCGA-E9-A22G 
       35.24         9.86        34.95         2.56         6.58        23.51 
TCGA-E9-A248 TCGA-E9-A3HO TCGA-E9-A5FL TCGA-EW-A1J6 TCGA-EW-A1P0 TCGA-EW-A1P7 
        1.94        26.07         0.79        28.77        41.13        30.08 
TCGA-EW-A1PB TCGA-EW-A2FV TCGA-EW-A3U0 TCGA-EW-A423 TCGA-GI-A2C9 TCGA-GM-A2DF 
       19.99        25.91        17.49        10.16       109.87        70.85 
TCGA-GM-A3NW TCGA-HN-A2NL TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LD-A7W5 TCGA-LL-A6FQ 
      110.50         2.60        11.84        11.57         7.10         2.63 
TCGA-LL-A73Y TCGA-MS-A51U TCGA-S3-A6ZG TCGA-S3-AA10 TCGA-UU-A93S 
       15.68        22.39        13.12        15.39         3.81 

$`AMP PEAK 20(13Q34) WILD-TYPE`
TCGA-3C-AAAU TCGA-3C-AALI TCGA-3C-AALJ TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT0 
      129.14       131.67        42.81        40.14        11.44        48.56 
TCGA-5L-AAT1 TCGA-5T-A9QA TCGA-A1-A0SB TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF 
       48.36         9.96         8.52        14.37        43.43        48.10 
TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SP 
       14.27        47.24        20.88         7.96        39.32        19.20 
TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04P TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04U 
       18.21       104.81        18.02        78.41       121.94        87.25 
TCGA-A2-A04V TCGA-A2-A04W TCGA-A2-A04X TCGA-A2-A04Y TCGA-A2-A0CK TCGA-A2-A0CL 
       63.12       101.98        55.43        36.13       136.73        99.12 
TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CQ TCGA-A2-A0CR TCGA-A2-A0CS 
       24.79       114.81        92.48        88.60       107.93        75.55 
TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0CX TCGA-A2-A0D1 
       75.25         5.19        98.99       107.93        56.81        34.55 
TCGA-A2-A0D3 TCGA-A2-A0D4 TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP 
       61.58        25.22       101.72       134.40        80.28       107.61 
TCGA-A2-A0ER TCGA-A2-A0ES TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX 
       74.40        72.00        34.29        31.82        61.94        24.72 
TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0SY TCGA-A2-A0T1 TCGA-A2-A0T2 
       54.64        27.12        44.88        44.28        17.13         8.38 
TCGA-A2-A0T3 TCGA-A2-A0T4 TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0YC TCGA-A2-A0YD 
       49.84        20.52        17.46        18.90        32.55        25.28 
TCGA-A2-A0YE TCGA-A2-A0YF TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YK 
       18.21        50.47        21.90        21.67        49.48        19.33 
TCGA-A2-A0YL TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1FX TCGA-A2-A1FZ 
       48.46        23.77        23.47        17.36        60.72        22.45 
TCGA-A2-A1G0 TCGA-A2-A1G4 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25A TCGA-A2-A25B 
       20.25        19.56        16.47        52.47       107.70        42.44 
TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD 
       17.19        18.15       105.34        10.59        20.88        39.65 
TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX TCGA-A2-A3XY TCGA-A2-A3XZ 
       29.98        32.75        49.48        47.31        34.98        50.37 
TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S2 
        7.30        24.39        21.30        23.21        26.96        21.14 
TCGA-A2-A4S3 TCGA-A7-A0CD TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0CJ TCGA-A7-A0D9 
       21.90        38.30        34.29        35.47        30.61        37.45 
TCGA-A7-A0DB TCGA-A7-A0DC TCGA-A7-A13E TCGA-A7-A13F TCGA-A7-A13G TCGA-A7-A13H 
       33.11        29.79        20.19        25.15        23.61        29.56 
TCGA-A7-A26E TCGA-A7-A26G TCGA-A7-A26H TCGA-A7-A26I TCGA-A7-A26J TCGA-A7-A2KD 
       31.36        23.74        23.80        21.73        20.61        22.32 
TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J1 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A426 
       11.34        10.59        11.28        13.41        14.70        11.97 
TCGA-A7-A4SA TCGA-A7-A4SB TCGA-A7-A4SE TCGA-A7-A4SF TCGA-A7-A56D TCGA-A7-A5ZV 
       14.93        13.74        21.17        17.92        14.73        12.10 
TCGA-A7-A5ZW TCGA-A7-A5ZX TCGA-A7-A6VV TCGA-A7-A6VW TCGA-A7-A6VX TCGA-A7-A6VY 
       10.72        11.05        10.29         9.37        10.42         8.75 
TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06R TCGA-A8-A06T TCGA-A8-A06U 
       13.02        13.02         1.02        17.98        53.06        29.03 
TCGA-A8-A06X TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A079 
       31.00        26.01         1.02        17.03        53.98         9.01 
TCGA-A8-A07B TCGA-A8-A07E TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07J TCGA-A8-A07L 
       43.00        19.99        18.97        18.97        12.00        32.05 
TCGA-A8-A07O TCGA-A8-A07P TCGA-A8-A07S TCGA-A8-A07U TCGA-A8-A07W TCGA-A8-A07Z 
        9.99        10.98         7.99        24.99         9.99        45.07 
TCGA-A8-A082 TCGA-A8-A084 TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08B 
       18.05        15.06        36.95        13.02         0.99        38.01 
TCGA-A8-A08C TCGA-A8-A08F TCGA-A8-A08O TCGA-A8-A08P TCGA-A8-A08R TCGA-A8-A08S 
       28.96        33.01        31.00        31.00         0.99        33.01 
TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A08Z TCGA-A8-A092 TCGA-A8-A093 TCGA-A8-A099 
      112.08        43.00        40.01        30.97        17.95         9.99 
TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09D TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K 
        9.99        12.00        50.04        49.05        45.07        29.98 
TCGA-A8-A09N TCGA-A8-A09Q TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09W 
        1.02        25.02         8.98        19.04        15.02         0.99 
TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A7 
       14.01        12.00        19.04        13.02        21.04         0.99 
TCGA-A8-A0A9 TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23E TCGA-AC-A23G TCGA-AC-A23H 
       27.02        38.04         0.95         2.37        10.85         5.72 
TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK 
       38.53        99.35        40.57        55.43        36.99        38.79 
TCGA-AC-A2FO TCGA-AC-A2QH TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3HN 
       50.70        33.04         0.92         2.27        32.45        16.31 
TCGA-AC-A3QP TCGA-AC-A3TN TCGA-AC-A3W6 TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A5XS 
       22.19        14.99        19.79        23.24        24.79         1.55 
TCGA-AC-A62V TCGA-AC-A62X TCGA-AC-A62Y TCGA-AC-A6IV TCGA-AC-A6IW TCGA-AC-A6IX 
       11.44        13.71        17.42        18.67        13.58        12.26 
TCGA-AC-A6NO TCGA-AC-A7VB TCGA-AC-A7VC TCGA-AC-A8OQ TCGA-AC-A8OR TCGA-AC-A8OS 
        1.68         8.22         0.03         1.12         1.32         2.30 
TCGA-AN-A03X TCGA-AN-A046 TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A0AJ TCGA-AN-A0AK 
        0.33         0.33         0.62         2.96         9.96         7.36 
TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FK TCGA-AN-A0FL 
        0.33         0.33         6.44         5.65         7.00         7.59 
TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XP TCGA-AN-A0XR 
        7.17         6.28         0.33         0.33         0.30         0.33 
TCGA-AN-A0XS TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03L TCGA-AO-A03M TCGA-AO-A03N 
        0.33         5.33         5.59        80.28        61.35        66.77 
TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03V TCGA-AO-A0J2 
       81.63        95.70        68.75        47.87        29.13        32.78 
TCGA-AO-A0J3 TCGA-AO-A0J4 TCGA-AO-A0J5 TCGA-AO-A0J6 TCGA-AO-A0J8 TCGA-AO-A0J9 
       21.40        52.18        26.04        37.48        22.36        53.03 
TCGA-AO-A0JA TCGA-AO-A0JC TCGA-AO-A0JD TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JG 
       21.53        50.86        72.00        76.77        21.37        26.24 
TCGA-AO-A0JI TCGA-AO-A0JJ TCGA-AO-A0JL TCGA-AO-A0JM TCGA-AO-A125 TCGA-AO-A126 
       50.24        62.04        55.33        71.80        99.25       108.72 
TCGA-AO-A128 TCGA-AO-A12E TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO 
      106.78        57.30        48.36        41.62        28.37        14.73 
TCGA-AO-A1KP TCGA-AO-A1KQ TCGA-AO-A1KR TCGA-AO-A1KS TCGA-AO-A1KT TCGA-AQ-A04H 
       82.62        61.87        70.39         0.53        17.79        24.79 
TCGA-AQ-A04L TCGA-AQ-A0Y5 TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AQ-A54N TCGA-AQ-A54O 
      130.09         5.65        15.62        32.52         2.56        32.91 
TCGA-AQ-A7U7 TCGA-AR-A0TQ TCGA-AR-A0TR TCGA-AR-A0TS TCGA-AR-A0TV TCGA-AR-A0TW 
       19.20        73.64         5.26        74.79        42.35        98.93 
TCGA-AR-A0TX TCGA-AR-A0TY TCGA-AR-A0TZ TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A0U2 
       64.83        55.86       107.24        65.36       101.95        83.87 
TCGA-AR-A0U4 TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AL 
       85.97        75.55        61.84        52.77        51.25        48.82 
TCGA-AR-A1AM TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AQ TCGA-AR-A1AR TCGA-AR-A1AS 
       76.11        43.56        39.98        43.07        17.23        37.81 
TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24K TCGA-AR-A24L 
       76.21        61.28        62.14        33.73        50.89        94.22 
TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24Q TCGA-AR-A24R 
       96.89        78.51        84.20         2.76       104.28        87.22 
TCGA-AR-A24S TCGA-AR-A24T TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A24Z 
       97.84        76.01        85.35        50.96        83.77        79.00 
TCGA-AR-A250 TCGA-AR-A251 TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A255 TCGA-AR-A2LE 
       89.00        78.48        73.18        72.76        58.92       143.21 
TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LL TCGA-AR-A2LM TCGA-AR-A2LN 
       20.25        62.86        54.21        66.15        52.11        38.17 
TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A5QM TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ 
       39.39        40.54        54.74        16.04        20.45        10.59 
TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0I9 TCGA-B6-A0IA TCGA-B6-A0IC 
       77.62       143.38       149.59        12.13       220.90        50.70 
TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN 
       65.72       146.50       112.37        18.77       126.12        84.59 
TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RL TCGA-B6-A0RM 
      110.93       140.88       189.01       234.28        81.17        78.02 
TCGA-B6-A0RN TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RV TCGA-B6-A0WS 
      172.96       102.77       140.48        89.46       157.41        97.48 
TCGA-B6-A0WT TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 
      188.68        18.35        21.47       129.57       129.70       186.48 
TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A1KI 
       28.27        68.94        58.88        43.59       101.52        73.51 
TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A401 TCGA-B6-A402 TCGA-B6-A408 TCGA-B6-A40B 
      139.17       170.17        85.35        74.99        68.12       103.63 
TCGA-B6-A40C TCGA-BH-A0AU TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0AZ TCGA-BH-A0B0 
       71.15        24.53        20.45        25.55        28.50        46.95 
TCGA-BH-A0B2 TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0B6 TCGA-BH-A0B7 
       40.83        39.55        39.16        48.36        56.94        56.98 
TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BF TCGA-BH-A0BG TCGA-BH-A0BJ 
       37.22        32.02        18.21        25.71        24.85        21.70 
TCGA-BH-A0BL TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BP TCGA-BH-A0BQ TCGA-BH-A0BR 
       44.05        61.68        35.67        48.69        27.19        53.69 
TCGA-BH-A0BS TCGA-BH-A0BV TCGA-BH-A0BW TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C1 
       53.95        49.94        11.67        49.05        41.75        44.02 
TCGA-BH-A0C3 TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DI 
       48.13        45.83        31.17        23.44        38.01        22.13 
TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DO TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0DS 
       13.91        48.23        17.26        15.65         3.22         2.56 
TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E1 TCGA-BH-A0E6 
       38.47        67.86        47.41        16.27        15.68         9.63 
TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EA TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0GY 
       44.81        46.19        32.58        31.00        24.43        30.35 
TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H7 
       10.78        15.16        37.78        35.51        24.56        23.08 
TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HO 
       41.00        52.96        26.50        20.38         5.85         2.50 
TCGA-BH-A0HP TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0RX 
       13.61        12.89        51.32        27.25        50.79         5.59 
TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A0WA TCGA-BH-A18F 
       23.93        24.95        42.35        44.81        23.05         8.81 
TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18M 
        2.01         7.23        20.12        90.84        26.66        72.56 
TCGA-BH-A18P TCGA-BH-A18R TCGA-BH-A18S TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A1EN 
       30.28        37.55        66.05         7.36        51.39        69.93 
TCGA-BH-A1EO TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EW 
       91.99       113.82        82.85        42.28        12.00        55.69 
TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F2 TCGA-BH-A1F5 TCGA-BH-A1F6 TCGA-BH-A1F8 
       17.69        25.81        31.53        89.16        97.48        24.66 
TCGA-BH-A1FB TCGA-BH-A1FC TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH 
      120.62       114.15        33.17        74.73       122.89        36.92 
TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A201 TCGA-BH-A202 
       63.35        55.00       144.59        72.07        28.14        26.14 
TCGA-BH-A203 TCGA-BH-A204 TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 
       38.60        83.31       130.16        10.65         6.44        20.12 
TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5J0 TCGA-BH-A6R8 TCGA-BH-A8FY 
       10.52       109.28         8.94        23.51         9.63         9.70 
TCGA-BH-A8FZ TCGA-BH-A8G0 TCGA-BH-AB28 TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12P 
       18.87        21.76         9.44        11.77        12.66        11.77 
TCGA-C8-A12Q TCGA-C8-A12U TCGA-C8-A12V TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A12Z 
       12.66        12.66        12.66        12.66        12.66         0.39 
TCGA-C8-A130 TCGA-C8-A132 TCGA-C8-A135 TCGA-C8-A137 TCGA-C8-A138 TCGA-C8-A1HE 
        3.16         1.87         1.05         4.11         4.08        12.33 
TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HL 
       10.92        11.34        11.28         0.16        12.03        10.42 
TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A26X TCGA-C8-A26Z 
        2.30         3.25         0.30         0.23         0.36         8.28 
TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A3M7 TCGA-C8-A3M8 
        9.67         9.53         9.50        12.20         0.03         0.23 
TCGA-C8-A8HP TCGA-C8-A8HQ TCGA-C8-A8HR TCGA-C8-A9FZ TCGA-D8-A13Y TCGA-D8-A13Z 
       13.02        12.49        13.41        19.46        11.90        20.88 
TCGA-D8-A140 TCGA-D8-A142 TCGA-D8-A145 TCGA-D8-A146 TCGA-D8-A147 TCGA-D8-A1J8 
       13.25        13.97        13.48        21.14        19.20        14.17 
TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JD TCGA-D8-A1JE 
       17.49        16.50        18.71        15.78        18.15        18.90 
TCGA-D8-A1JG TCGA-D8-A1JH TCGA-D8-A1JI TCGA-D8-A1JK TCGA-D8-A1JM TCGA-D8-A1JN 
       12.03        14.01        18.97        20.12        19.40        20.38 
TCGA-D8-A1JP TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X6 
       21.01        12.20        13.32        14.70        18.58        17.79 
TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC 
       16.73        25.74        23.90        27.58        18.15        12.39 
TCGA-D8-A1XD TCGA-D8-A1XG TCGA-D8-A1XK TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO 
       17.16        14.73        14.50        19.92        17.69        15.55 
TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1XV TCGA-D8-A1XY 
       15.85        16.31         6.35        12.99        15.16        16.54 
TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 TCGA-D8-A1Y3 TCGA-D8-A27E 
       15.32        15.52         9.93        14.24        14.14        17.42 
TCGA-D8-A27F TCGA-D8-A27G TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27N 
       16.04        13.45        14.43         9.44        16.41         4.80 
TCGA-D8-A27P TCGA-D8-A27T TCGA-D8-A27V TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 
        0.76        13.08        12.53        33.37        18.51        21.67 
TCGA-D8-A73U TCGA-D8-A73W TCGA-D8-A73X TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A108 
       16.18         8.02        12.10        43.00        34.42        27.52 
TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10C TCGA-E2-A10E TCGA-E2-A10F 
       46.59        40.41        37.51        40.11        28.44        28.87 
TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14Q TCGA-E2-A14S TCGA-E2-A14U TCGA-E2-A14V 
       47.15        44.68        38.24        33.17        43.33        34.26 
TCGA-E2-A14W TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A153 TCGA-E2-A155 
       32.02        18.51        25.41        27.12        23.24        21.04 
TCGA-E2-A156 TCGA-E2-A159 TCGA-E2-A15A TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15F 
       23.87        25.05        23.34        22.82        17.29        21.63 
TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M 
       18.21        12.92        19.40         9.04        20.58        11.05 
TCGA-E2-A15O TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1AZ 
       13.02        19.56        17.06        14.07        14.99        60.53 
TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BC 
       53.62        53.03        33.01        32.35        28.50        16.47 
TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1IH TCGA-E2-A1II TCGA-E2-A1IJ 
       38.30        37.41        32.78        33.73        33.70        28.44 
TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IO TCGA-E2-A1IU TCGA-E2-A1L6 
       22.65         3.88        22.19        20.98        11.08        54.18 
TCGA-E2-A1L7 TCGA-E2-A1L8 TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LK TCGA-E2-A1LL 
       27.42        39.62        24.59        40.47         8.75        43.04 
TCGA-E2-A2P5 TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A570 TCGA-E2-A576 TCGA-E2-A9RU 
       16.93         5.52        15.72        30.61        34.29        12.85 
TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N6 TCGA-E9-A1N9 TCGA-E9-A1NA 
       34.82        32.88        36.82        13.48        13.12        36.56 
TCGA-E9-A1NC TCGA-E9-A1NE TCGA-E9-A1NG TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R4 
       39.55        35.77        25.84        11.90        28.27         6.12 
TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RC 
        3.02         2.76        21.21        32.09        32.09        40.24 
TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RG TCGA-E9-A1RH TCGA-E9-A1RI TCGA-E9-A226 
        1.12        34.65        21.27        34.59        35.64        34.13 
TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A22D 
       32.05        12.53        13.32        39.09        22.75        41.03 
TCGA-E9-A22E TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A244 TCGA-E9-A247 TCGA-E9-A249 
       12.89        20.71        17.06         0.69        27.22         7.13 
TCGA-E9-A24A TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A2JT TCGA-E9-A3Q9 TCGA-E9-A3QA 
       24.56         0.72        29.72         0.76        18.41        30.18 
TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5UO TCGA-E9-A5UP 
       15.72        12.33        23.84        14.70        13.81        14.40 
TCGA-E9-A6HE TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 
       15.39        12.20        39.72         8.48        18.21        18.90 
TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J5 TCGA-EW-A1OV TCGA-EW-A1OW TCGA-EW-A1OX 
       13.25        16.57        15.68        25.94        22.82        29.95 
TCGA-EW-A1OY TCGA-EW-A1OZ TCGA-EW-A1P1 TCGA-EW-A1P3 TCGA-EW-A1P4 TCGA-EW-A1P5 
       29.85        40.41        39.78        52.96        29.82        23.11 
TCGA-EW-A1P6 TCGA-EW-A1P8 TCGA-EW-A1PA TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A1PE 
       18.48         7.86        18.90         6.15        13.94        10.52 
TCGA-EW-A1PF TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FW 
       14.43        34.55        19.96        55.00        52.73        22.09 
TCGA-EW-A3E8 TCGA-EW-A424 TCGA-GI-A2C8 TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DB 
       34.03        23.51         7.40        59.57       216.76        79.10 
TCGA-GM-A2DC TCGA-GM-A2DD TCGA-GM-A2DH TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL 
       83.34        75.02        72.10        85.15        86.96       115.69 
TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A2DO TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XL 
      106.06       101.62        85.35        38.20        43.73        69.30 
TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2OB TCGA-LD-A66U 
       66.38        72.03        13.55        18.12        62.43        21.24 
TCGA-LD-A74U TCGA-LD-A7W6 TCGA-LD-A9QF TCGA-LL-A440 TCGA-LL-A441 TCGA-LL-A442 
       13.22        13.28        10.62        24.95        11.44        10.95 
TCGA-LL-A50Y TCGA-LL-A5YL TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LL-A5YP 
       25.05        17.06        15.32        14.70        14.47        14.79 
TCGA-LL-A6FP TCGA-LL-A6FR TCGA-LL-A73Z TCGA-LL-A740 TCGA-LL-A7SZ TCGA-LL-A7T0 
       22.26        16.08         7.46        14.50        14.70        12.36 
TCGA-LL-A8F5 TCGA-LL-A9Q3 TCGA-LQ-A4E4 TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5D7 
       14.73        14.07        27.91         2.10        36.30        58.52 
TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RU TCGA-OL-A5RV TCGA-OL-A5RW TCGA-OL-A5RX 
       31.99        58.62        40.08        34.92        36.36        28.87 
TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J 
       24.72        22.32        20.38        26.70        23.47        65.62 
TCGA-OL-A66K TCGA-OL-A66L TCGA-OL-A66N TCGA-OL-A66O TCGA-OL-A66P TCGA-OL-A6VO 
       41.92        42.77        26.04        17.36        14.07        28.21 
TCGA-OL-A6VQ TCGA-OL-A6VR TCGA-OL-A97C TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE 
       19.73        40.11         8.91        47.01        64.21        86.96 
TCGA-PL-A8LX TCGA-PL-A8LY TCGA-PL-A8LZ TCGA-S3-A6ZF TCGA-S3-A6ZH TCGA-S3-AA0Z 
        0.16         0.26         9.93        16.50        16.93        16.80 
TCGA-S3-AA11 TCGA-S3-AA12 TCGA-S3-AA14 TCGA-S3-AA15 TCGA-S3-AA17 TCGA-UL-AAZ6 
       13.84        15.35        14.96        13.84        13.94        17.03 
TCGA-W8-A86G TCGA-WT-AB41 TCGA-WT-AB44 TCGA-XX-A899 TCGA-XX-A89A TCGA-Z7-A8R5 
       11.41        52.96        29.03        15.35        16.04       108.07 
TCGA-Z7-A8R6 
      107.05 

  AMP PEAK 20(13Q34) MUTATED AMP PEAK 20(13Q34) WILD-TYPE 
                        0.03                         0.03 
  AMP PEAK 20(13Q34) MUTATED AMP PEAK 20(13Q34) WILD-TYPE 
                      211.56                       234.28 
  AMP PEAK 20(13Q34) MUTATED AMP PEAK 20(13Q34) WILD-TYPE 
                       20.71                        24.79 
[1] "0.0 - 211.6 (20.7)" "0.0 - 234.3 (24.8)"
[1] "hr=" "1.1"
D20V2, continuous
                              vv
clus                           STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  AMP PEAK 20(13Q34) MUTATED         7       10        1        0        77
  AMP PEAK 20(13Q34) WILD-TYPE      82       71        7        3       276
                              vv
clus                           STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  AMP PEAK 20(13Q34) MUTATED          37         0         23          4
  AMP PEAK 20(13Q34) WILD-TYPE       208         2        127         25
                              vv
clus                           STAGE IIIC STAGE IV STAGE TIS STAGE X
  AMP PEAK 20(13Q34) MUTATED           10        4         0       2
  AMP PEAK 20(13Q34) WILD-TYPE         53       16         1      11
D20V3, multiclass
            clus
vv           AMP PEAK 20(13Q34) MUTATED AMP PEAK 20(13Q34) WILD-TYPE
  STAGE I                             7                           82
  STAGE IA                           10                           71
  STAGE IB                            1                            7
  STAGE II                            0                            3
  STAGE IIA                          77                          276
  STAGE IIB                          37                          208
  STAGE III                           0                            2
  STAGE IIIA                         23                          127
  STAGE IIIB                          4                           25
  STAGE IIIC                         10                           53
  STAGE IV                            4                           16
  STAGE TIS                           0                            1
  STAGE X                             2                           11
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                            T1  T2  T3  T4
  AMP PEAK 20(13Q34) MUTATED    30 122  17   6
  AMP PEAK 20(13Q34) WILD-TYPE 242 494 113  34
D20V4, multiclass
    clus
vv   AMP PEAK 20(13Q34) MUTATED AMP PEAK 20(13Q34) WILD-TYPE
  T1                         30                          242
  T2                        122                          494
  T3                         17                          113
  T4                          6                           34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                            N0  N1  N2  N3
  AMP PEAK 20(13Q34) MUTATED    96  49  18  13
  AMP PEAK 20(13Q34) WILD-TYPE 405 301  99  62
D20V5, multiclass
    clus
vv   AMP PEAK 20(13Q34) MUTATED AMP PEAK 20(13Q34) WILD-TYPE
  N0                         96                          405
  N1                         49                          301
  N2                         18                           99
  N3                         13                           62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D20V6, binary
                              cls
clus                             0   1
  AMP PEAK 20(13Q34) MUTATED   158   4
  AMP PEAK 20(13Q34) WILD-TYPE 721  17
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 20(13Q34) MUTATED    158    4
  AMP PEAK 20(13Q34) WILD-TYPE  721   17
   clus
vv  AMP PEAK 20(13Q34) MUTATED AMP PEAK 20(13Q34) WILD-TYPE
  0                        158                          721
  1                          4                           17
[1] 2 2
[1] FALSE
D20V7, binary
                              cls
clus                             0   1
  AMP PEAK 20(13Q34) MUTATED   176   0
  AMP PEAK 20(13Q34) WILD-TYPE 875  11
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 20(13Q34) MUTATED    176    0
  AMP PEAK 20(13Q34) WILD-TYPE  875   11
        clus
vv       AMP PEAK 20(13Q34) MUTATED AMP PEAK 20(13Q34) WILD-TYPE
  FEMALE                        176                          875
  MALE                            0                           11
[1] 2 2
[1] FALSE
                              vv
clus                           INFILTRATING CARCINOMA NOS
  AMP PEAK 20(13Q34) MUTATED                            0
  AMP PEAK 20(13Q34) WILD-TYPE                          1
                              vv
clus                           INFILTRATING DUCTAL CARCINOMA
  AMP PEAK 20(13Q34) MUTATED                             144
  AMP PEAK 20(13Q34) WILD-TYPE                           619
                              vv
clus                           INFILTRATING LOBULAR CARCINOMA
  AMP PEAK 20(13Q34) MUTATED                               13
  AMP PEAK 20(13Q34) WILD-TYPE                            179
                              vv
clus                           MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  AMP PEAK 20(13Q34) MUTATED                     1                     2
  AMP PEAK 20(13Q34) WILD-TYPE                   5                     2
                              vv
clus                           MIXED HISTOLOGY (PLEASE SPECIFY)
  AMP PEAK 20(13Q34) MUTATED                                  4
  AMP PEAK 20(13Q34) WILD-TYPE                               26
                              vv
clus                           MUCINOUS CARCINOMA OTHER  SPECIFY
  AMP PEAK 20(13Q34) MUTATED                    2             10
  AMP PEAK 20(13Q34) WILD-TYPE                 15             38
D20V8, multiclass
                                  clus
vv                                 AMP PEAK 20(13Q34) MUTATED
  INFILTRATING CARCINOMA NOS                                0
  INFILTRATING DUCTAL CARCINOMA                           144
  INFILTRATING LOBULAR CARCINOMA                           13
  MEDULLARY CARCINOMA                                       1
  METAPLASTIC CARCINOMA                                     2
  MIXED HISTOLOGY (PLEASE SPECIFY)                          4
  MUCINOUS CARCINOMA                                        2
  OTHER  SPECIFY                                           10
                                  clus
vv                                 AMP PEAK 20(13Q34) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                  1
  INFILTRATING DUCTAL CARCINOMA                             619
  INFILTRATING LOBULAR CARCINOMA                            179
  MEDULLARY CARCINOMA                                         5
  METAPLASTIC CARCINOMA                                       2
  MIXED HISTOLOGY (PLEASE SPECIFY)                           26
  MUCINOUS CARCINOMA                                         15
  OTHER  SPECIFY                                             38
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D20V9, binary
                              cls
clus                             0   1
  AMP PEAK 20(13Q34) MUTATED    48 128
  AMP PEAK 20(13Q34) WILD-TYPE 240 646
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 20(13Q34) MUTATED     48  128
  AMP PEAK 20(13Q34) WILD-TYPE  240  646
     clus
vv    AMP PEAK 20(13Q34) MUTATED AMP PEAK 20(13Q34) WILD-TYPE
  NO                          48                          240
  YES                        128                          646
[1] 2 2
[1] FALSE
D20V10, continuous
                              vv
clus                           AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK 20(13Q34) MUTATED                                  0    11
  AMP PEAK 20(13Q34) WILD-TYPE                                1    49
                              vv
clus                           BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 20(13Q34) MUTATED                          32   120
  AMP PEAK 20(13Q34) WILD-TYPE                       138   616
D20V11, multiclass
                                  clus
vv                                 AMP PEAK 20(13Q34) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                          0
  ASIAN                                                    11
  BLACK OR AFRICAN AMERICAN                                32
  WHITE                                                   120
                                  clus
vv                                 AMP PEAK 20(13Q34) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                            1
  ASIAN                                                      49
  BLACK OR AFRICAN AMERICAN                                 138
  WHITE                                                     616
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D20V12, binary
                              cls
clus                             0   1
  AMP PEAK 20(13Q34) MUTATED     7 147
  AMP PEAK 20(13Q34) WILD-TYPE  31 711
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 20(13Q34) MUTATED      7  147
  AMP PEAK 20(13Q34) WILD-TYPE   31  711
                        clus
vv                       AMP PEAK 20(13Q34) MUTATED
  HISPANIC OR LATINO                              7
  NOT HISPANIC OR LATINO                        147
                        clus
vv                       AMP PEAK 20(13Q34) WILD-TYPE
  HISPANIC OR LATINO                               31
  NOT HISPANIC OR LATINO                          711
[1] 2 2
[1] FALSE

Clustering(21) Variable = AMP PEAK 21(14Q21.1) MUTATION ANALYSIS
D21V1, survival
                                sevent
clus2                              0   1
  AMP PEAK 21(14Q21.1) MUTATED   188  28
  AMP PEAK 21(14Q21.1) WILD-TYPE 728 100
  AMP PEAK 21(14Q21.1) MUTATED AMP PEAK 21(14Q21.1) WILD-TYPE 
                           216                            828 
  AMP PEAK 21(14Q21.1) MUTATED AMP PEAK 21(14Q21.1) WILD-TYPE 
                            28                            100 
$`AMP PEAK 21(14Q21.1) MUTATED`
TCGA-3C-AALI TCGA-3C-AALJ TCGA-A1-A0SN TCGA-A1-A0SO TCGA-A2-A04W TCGA-A2-A0CW 
      131.67        42.81        39.32        28.01       101.98       107.93 
TCGA-A2-A0D4 TCGA-A2-A0SW TCGA-A2-A0T3 TCGA-A2-A0YH TCGA-A2-A1FW TCGA-A2-A25B 
       25.22        44.88        49.84        21.67        17.36        42.44 
TCGA-A2-A25C TCGA-A2-A3KD TCGA-A2-A4RX TCGA-A2-A4S3 TCGA-A7-A0CJ TCGA-A7-A0DA 
       17.19        39.65        24.39        21.90        30.61        35.67 
TCGA-A7-A0DB TCGA-A7-A4SA TCGA-A7-A56D TCGA-A7-A6VX TCGA-A8-A06O TCGA-A8-A06R 
       33.11        14.93        14.73        10.42        13.02        17.98 
TCGA-A8-A06X TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A07R TCGA-A8-A07W TCGA-A8-A08B 
       31.00        17.03        53.98         8.98         9.99        38.01 
TCGA-A8-A08F TCGA-A8-A08I TCGA-A8-A08O TCGA-A8-A08P TCGA-A8-A08S TCGA-A8-A08X 
       33.01        12.00        31.00        31.00        33.01        43.00 
TCGA-A8-A091 TCGA-A8-A092 TCGA-A8-A095 TCGA-A8-A097 TCGA-A8-A09A TCGA-A8-A09C 
       33.01        30.97        41.98        12.00         9.99         1.02 
TCGA-A8-A09D TCGA-A8-A09M TCGA-A8-A09R TCGA-A8-A09W TCGA-A8-A09X TCGA-A8-A0A2 
       50.04        33.07         8.98         0.99        14.01        19.04 
TCGA-A8-A0A9 TCGA-AC-A23E TCGA-AC-A2FM TCGA-AC-A62V TCGA-AC-A62Y TCGA-AC-A7VB 
       27.02         2.37        26.04        11.44        17.42         8.22 
TCGA-AN-A04A TCGA-AN-A0AM TCGA-AN-A0FW TCGA-AN-A0FY TCGA-AN-A0FZ TCGA-AN-A0XN 
        2.96         0.16         0.36         0.33         0.33         0.33 
TCGA-AO-A03L TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A0J2 TCGA-AO-A0J3 
       80.28        66.77        81.63        95.70        32.78        21.40 
TCGA-AO-A0J7 TCGA-AO-A0JE TCGA-AO-A0JM TCGA-AO-A1KS TCGA-AQ-A0Y5 TCGA-AR-A0TQ 
       20.32        76.77        71.80         0.53         5.65        73.64 
TCGA-AR-A0TR TCGA-AR-A0TV TCGA-AR-A0TW TCGA-AR-A0U4 TCGA-AR-A1AP TCGA-AR-A1AW 
        5.26        42.35        98.93        85.97        39.98        63.62 
TCGA-AR-A24K TCGA-AR-A24M TCGA-AR-A24R TCGA-AR-A250 TCGA-AR-A2LK TCGA-AR-A5QM 
       50.89        96.89        87.22        89.00        54.21        54.74 
TCGA-B6-A0I5 TCGA-B6-A0I9 TCGA-B6-A0IB TCGA-B6-A0RO TCGA-B6-A0RS TCGA-B6-A0RU 
      149.59        12.13       129.57       162.05       100.70       131.21 
TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0WY TCGA-B6-A0WZ TCGA-B6-A1KN TCGA-B6-A401 
       79.63        18.35       113.79       129.57       139.17        85.35 
TCGA-B6-A402 TCGA-B6-A408 TCGA-BH-A0B4 TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BL 
       74.99        68.12        39.16        37.22        32.02        44.05 
TCGA-BH-A0BT TCGA-BH-A0DG TCGA-BH-A0DL TCGA-BH-A0DS TCGA-BH-A0E9 TCGA-BH-A0EE 
       45.57        23.44        48.23         2.56        46.19        31.00 
TCGA-BH-A0HI TCGA-BH-A0HX TCGA-BH-A0W7 TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A1EN 
       20.38        27.25        44.81        90.84        26.66        69.93 
TCGA-BH-A1EV TCGA-BH-A1F2 TCGA-BH-A1FM TCGA-BH-A1FU TCGA-BH-A5J0 TCGA-BH-A6R9 
       12.00        31.53        45.63        72.07        23.51         5.26 
TCGA-C8-A12M TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12U TCGA-C8-A12W TCGA-C8-A130 
       11.77        12.66        11.77        12.66        12.66         3.16 
TCGA-C8-A132 TCGA-C8-A138 TCGA-C8-A1HI TCGA-C8-A273 TCGA-C8-A27A TCGA-D8-A13Z 
        1.87         4.08        11.28         9.67        12.20        20.88 
TCGA-D8-A141 TCGA-D8-A143 TCGA-D8-A146 TCGA-D8-A1J8 TCGA-D8-A1JD TCGA-D8-A1JF 
       20.58        14.17        21.14        14.17        18.15        12.03 
TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1X5 TCGA-D8-A1X9 TCGA-D8-A1XF TCGA-D8-A1XL 
       20.12        20.09        18.58        23.90        15.22        19.92 
TCGA-D8-A1XU TCGA-D8-A1XZ TCGA-D8-A27R TCGA-D8-A27W TCGA-D8-A3Z6 TCGA-E2-A109 
       12.99        15.32        10.09        12.26        18.51        46.59 
TCGA-E2-A10C TCGA-E2-A14P TCGA-E2-A14V TCGA-E2-A14Z TCGA-E2-A152 TCGA-E2-A153 
       40.11        40.96        34.26        18.51        27.12        23.24 
TCGA-E2-A154 TCGA-E2-A15A TCGA-E2-A15E TCGA-E2-A15I TCGA-E2-A15K TCGA-E2-A1IH 
       19.43        23.34        20.71        17.42         9.04        33.73 
TCGA-E2-A1IO TCGA-E2-A1L9 TCGA-E2-A1LG TCGA-E2-A1LH TCGA-E2-A2P5 TCGA-E2-A56Z 
       20.98        19.66        18.87       106.75        16.93         8.28 
TCGA-E2-A9RU TCGA-E9-A1N5 TCGA-E9-A1N6 TCGA-E9-A1NA TCGA-E9-A1NF TCGA-E9-A1NI 
       12.85        36.82        13.48        36.56        35.24         9.86 
TCGA-E9-A1R4 TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RG 
        6.12        32.09        40.24        34.65         6.58        21.27 
TCGA-E9-A226 TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A244 TCGA-E9-A247 TCGA-E9-A248 
       34.13        41.03        12.89         0.69        27.22         1.94 
TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UP 
        0.72        29.72        23.84        14.70         0.79        14.40 
TCGA-EW-A1IY TCGA-EW-A1OY TCGA-EW-A1OZ TCGA-EW-A1P3 TCGA-EW-A1PC TCGA-EW-A1PG 
        8.48        29.85        40.41        52.96         6.15        34.55 
TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A3U0 TCGA-GM-A2DB TCGA-LL-A5YM TCGA-LL-A5YN 
       52.73        25.91        17.49        79.10        15.32        14.70 
TCGA-LL-A5YO TCGA-LL-A6FQ TCGA-MS-A51U TCGA-OL-A5RW TCGA-OL-A6VR TCGA-OL-A97C 
       14.47         2.63        22.39        36.36        40.11         8.91 
TCGA-PE-A5DC TCGA-S3-A6ZF TCGA-S3-A6ZG TCGA-UL-AAZ6 TCGA-WT-AB44 TCGA-Z7-A8R6 
       47.01        16.50        13.12        17.03        29.03       107.05 

$`AMP PEAK 21(14Q21.1) WILD-TYPE`
TCGA-3C-AAAU TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT0 TCGA-5L-AAT1 TCGA-5T-A9QA 
      129.14        40.14        11.44        48.56        48.36         9.96 
TCGA-A1-A0SB TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH 
        8.52        14.37        43.43        48.10        14.27        47.24 
TCGA-A1-A0SI TCGA-A1-A0SJ TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SP TCGA-A1-A0SQ 
       20.88        13.68        31.79         7.96        19.20        18.21 
TCGA-A2-A04N TCGA-A2-A04P TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04U 
      104.81        18.02        78.41       121.94        73.84        87.25 
TCGA-A2-A04V TCGA-A2-A04X TCGA-A2-A04Y TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CM 
       63.12        55.43        36.13       136.73        99.12        24.79 
TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CQ TCGA-A2-A0CR TCGA-A2-A0CS TCGA-A2-A0CT 
      114.81        92.48        88.60       107.93        75.55        75.25 
TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CX TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D2 
        5.19        98.99        56.81        67.33        34.55        33.76 
TCGA-A2-A0D3 TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0EQ 
       61.58       101.72       134.40        80.28       107.61        79.76 
TCGA-A2-A0ER TCGA-A2-A0ES TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW 
       74.40        72.00        35.05        34.29        31.82        61.94 
TCGA-A2-A0EX TCGA-A2-A0EY TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SX 
       24.72        63.29        99.19        54.64        27.12        50.43 
TCGA-A2-A0SY TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T4 TCGA-A2-A0T5 
       44.28        17.52        17.13         8.38        20.52        17.46 
TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YE TCGA-A2-A0YF 
       18.90        20.75        32.55        25.28        18.21        50.47 
TCGA-A2-A0YG TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A0YM 
       21.90        49.48        18.61        19.33        48.46        31.73 
TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FX TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G1 
       23.77        23.47        60.72        22.45        20.25        19.20 
TCGA-A2-A1G4 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25A TCGA-A2-A25D TCGA-A2-A25E 
       19.56        16.47        52.47       107.70        18.15       105.34 
TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XU TCGA-A2-A3XV 
       10.59        20.88        33.93        83.01        29.98        32.75 
TCGA-A2-A3XW TCGA-A2-A3XX TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A3Y0 TCGA-A2-A4RW 
       49.48        47.31        34.98        50.37        38.37         7.30 
TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A7-A0CD TCGA-A7-A0CE 
       21.30        23.21        26.96        21.14        38.30        35.31 
TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0D9 TCGA-A7-A0DC TCGA-A7-A13D TCGA-A7-A13E 
       34.29        35.47        37.45        29.79        31.73        20.19 
TCGA-A7-A13F TCGA-A7-A13G TCGA-A7-A13H TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26G 
       25.15        23.61        29.56        31.36        24.26        23.74 
TCGA-A7-A26H TCGA-A7-A26I TCGA-A7-A26J TCGA-A7-A2KD TCGA-A7-A3IY TCGA-A7-A3IZ 
       23.80        21.73        20.61        22.32        11.34        10.59 
TCGA-A7-A3J0 TCGA-A7-A3J1 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A426 TCGA-A7-A4SB 
       10.29        11.28        13.41        14.70        11.97        13.74 
TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF TCGA-A7-A5ZV TCGA-A7-A5ZW TCGA-A7-A5ZX 
       14.50        21.17        17.92        12.10        10.72        11.05 
TCGA-A7-A6VV TCGA-A7-A6VW TCGA-A7-A6VY TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06T 
       10.29         9.37         8.75        13.02         1.02        53.06 
TCGA-A8-A06U TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A079 TCGA-A8-A07B TCGA-A8-A07E 
       29.03        26.01         1.02         9.01        43.00        19.99 
TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07L TCGA-A8-A07O 
       18.97        18.97        14.01        12.00        32.05         9.99 
TCGA-A8-A07P TCGA-A8-A07S TCGA-A8-A07U TCGA-A8-A07Z TCGA-A8-A082 TCGA-A8-A084 
       10.98         7.99        24.99        45.07        18.05        15.06 
TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08C TCGA-A8-A08G TCGA-A8-A08J 
       36.95        13.02         0.99        28.96        19.96        37.05 
TCGA-A8-A08L TCGA-A8-A08R TCGA-A8-A08T TCGA-A8-A08Z TCGA-A8-A093 TCGA-A8-A099 
        9.99         0.99       112.08        40.01        17.95         9.99 
TCGA-A8-A09B TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K TCGA-A8-A09N TCGA-A8-A09Q 
       12.00        49.05        45.07        29.98         1.02        25.02 
TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A0A1 TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A7 
       19.04        15.02        12.00        13.02        21.04         0.99 
TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23G TCGA-AC-A23H TCGA-AC-A2B8 
       17.03        38.04         0.95        10.85         5.72         1.48 
TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK 
       38.53        99.35        40.57        55.43        36.99        38.79 
TCGA-AC-A2FO TCGA-AC-A2QH TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3HN 
       50.70        33.04         0.92         2.27        32.45        16.31 
TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3TN TCGA-AC-A3W5 TCGA-AC-A3W6 TCGA-AC-A3YI 
       14.83        22.19        14.99        16.57        19.79        23.24 
TCGA-AC-A3YJ TCGA-AC-A5XS TCGA-AC-A62X TCGA-AC-A6IV TCGA-AC-A6IW TCGA-AC-A6IX 
       24.79         1.55        13.71        18.67        13.58        12.26 
TCGA-AC-A6NO TCGA-AC-A7VC TCGA-AC-A8OP TCGA-AC-A8OQ TCGA-AC-A8OR TCGA-AC-A8OS 
        1.68         0.03        20.19         1.12         1.32         2.30 
TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A041 TCGA-AN-A046 TCGA-AN-A049 TCGA-AN-A04C 
        0.33         0.33         0.23         0.33         0.62         1.78 
TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AK TCGA-AN-A0AL TCGA-AN-A0AR TCGA-AN-A0AS 
        1.71         9.96         7.36         6.51         0.33         0.33 
TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FL 
        0.33         6.44         5.65         7.96         7.00         7.59 
TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FX TCGA-AN-A0XL 
        7.17         6.28         7.04         0.33         0.33         0.33 
TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XU 
       12.33         0.30         0.33         0.33         0.33         0.33 
TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03M TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03U 
        5.33         5.59        61.35        68.75        47.87        58.95 
TCGA-AO-A03V TCGA-AO-A0J4 TCGA-AO-A0J5 TCGA-AO-A0J6 TCGA-AO-A0J8 TCGA-AO-A0J9 
       29.13        52.18        26.04        37.48        22.36        53.03 
TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JC TCGA-AO-A0JD TCGA-AO-A0JF TCGA-AO-A0JG 
       21.53        50.70        50.86        72.00        21.37        26.24 
TCGA-AO-A0JI TCGA-AO-A0JJ TCGA-AO-A0JL TCGA-AO-A124 TCGA-AO-A125 TCGA-AO-A126 
       50.24        62.04        55.33       102.58        99.25       108.72 
TCGA-AO-A128 TCGA-AO-A129 TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A12E 
      106.78       108.03        90.58        98.27        64.04        57.30 
TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KQ 
       48.36        41.62        28.37        14.73        82.62        61.87 
TCGA-AO-A1KR TCGA-AO-A1KT TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A1H2 
       70.39        17.79        24.79        26.93       130.09        15.62 
TCGA-AQ-A1H3 TCGA-AQ-A54N TCGA-AQ-A54O TCGA-AQ-A7U7 TCGA-AR-A0TP TCGA-AR-A0TS 
       32.52         2.56        32.91        19.20       111.32        74.79 
TCGA-AR-A0TT TCGA-AR-A0TX TCGA-AR-A0TY TCGA-AR-A0TZ TCGA-AR-A0U0 TCGA-AR-A0U1 
       86.66        64.83        55.86       107.24        65.36       101.95 
TCGA-AR-A0U2 TCGA-AR-A0U3 TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AK 
       83.87       114.02        75.55        61.84        52.77        51.25 
TCGA-AR-A1AL TCGA-AR-A1AM TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AQ TCGA-AR-A1AR 
       48.82        76.11        43.73        43.56        43.07        17.23 
TCGA-AR-A1AS TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24H 
       37.81        76.21        61.28        62.14        33.73       160.90 
TCGA-AR-A24L TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24Q TCGA-AR-A24S 
       94.22        78.51        84.20         2.76       104.28        97.84 
TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A24Z 
       76.01        53.36        85.35        50.96        83.77        79.00 
TCGA-AR-A251 TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LE 
       78.48        73.18        72.76        58.92        93.83       143.21 
TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LL TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO 
       20.25        62.86        66.15        52.11        38.17        39.39 
TCGA-AR-A2LQ TCGA-AR-A2LR TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 
       40.54        20.38        16.04        20.45        10.59        77.62 
TCGA-B6-A0I2 TCGA-B6-A0IA TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IH 
      143.38       220.90        50.70        65.72       146.50       112.37 
TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IO TCGA-B6-A0IP 
      176.98        18.77       126.12        84.59       110.14       110.93 
TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RL 
      140.88       211.56        68.45       189.01       234.28        81.17 
TCGA-B6-A0RM TCGA-B6-A0RN TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RV 
       78.02       172.96       102.77       140.48        89.46       157.41 
TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WX TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 
       97.48       188.68        21.47       129.70       186.48        28.27 
TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A2IU 
       68.94        58.88        43.59       101.52        73.51       170.17 
TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AU TCGA-BH-A0AV TCGA-BH-A0AW TCGA-BH-A0AY 
      103.63        71.15        24.53        59.84        20.45        25.55 
TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B2 TCGA-BH-A0B3 TCGA-BH-A0B5 TCGA-BH-A0B6 
       28.50        46.95        40.83        39.55        48.36        56.94 
TCGA-BH-A0B7 TCGA-BH-A0B9 TCGA-BH-A0BD TCGA-BH-A0BF TCGA-BH-A0BG TCGA-BH-A0BJ 
       56.98        51.68        18.21        25.71        24.85        21.70 
TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BP TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS 
       61.68        35.67        48.69        27.19        53.69        53.95 
TCGA-BH-A0BV TCGA-BH-A0BW TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0C3 
       49.94        11.67        49.05        41.75        44.02        48.13 
TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DK 
       42.90        45.83        31.17        38.01        22.13        13.91 
TCGA-BH-A0DO TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX 
       17.26        15.65         3.22        38.47        67.86        47.41 
TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E6 TCGA-BH-A0E7 
       16.27         4.41        15.68        14.30         9.63        44.81 
TCGA-BH-A0EA TCGA-BH-A0EB TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H0 
       32.58        24.49        24.43        30.35        10.78        15.16 
TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H7 TCGA-BH-A0H9 TCGA-BH-A0HA 
       37.78        35.51        24.56        23.08        41.00        52.96 
TCGA-BH-A0HB TCGA-BH-A0HK TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HU 
       26.50         5.85         2.50        13.61        36.85        12.89 
TCGA-BH-A0HW TCGA-BH-A0HY TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 
       51.32        50.79         5.59        23.93        24.95        42.35 
TCGA-BH-A0WA TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18M 
       23.05         8.81         2.01         7.23        20.12        72.56 
TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18R TCGA-BH-A18S TCGA-BH-A18T 
       37.74        30.28        55.63        37.55        66.05         7.36 
TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1EO TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EU 
       51.39        51.16        91.99       113.82        82.85        42.28 
TCGA-BH-A1EW TCGA-BH-A1EX TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F5 TCGA-BH-A1F6 
       55.69        49.58        17.69        25.81        89.16        97.48 
TCGA-BH-A1F8 TCGA-BH-A1FB TCGA-BH-A1FC TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FG 
       24.66       120.62       114.15        33.17        74.73       122.89 
TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FN TCGA-BH-A1FR TCGA-BH-A201 
       36.92        63.35        55.00        72.07       144.59        28.14 
TCGA-BH-A202 TCGA-BH-A203 TCGA-BH-A204 TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A28O 
       26.14        38.60        83.31        57.83       130.16        10.65 
TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5IZ 
        6.44        20.12        10.52       109.28         8.94        18.64 
TCGA-BH-A6R8 TCGA-BH-A8FY TCGA-BH-A8FZ TCGA-BH-A8G0 TCGA-BH-AB28 TCGA-C8-A12L 
        9.63         9.70        18.87        21.76         9.44        11.93 
TCGA-C8-A12N TCGA-C8-A12Q TCGA-C8-A12V TCGA-C8-A12X TCGA-C8-A12Z TCGA-C8-A131 
       11.77        12.66        12.66        12.66         0.39         2.24 
TCGA-C8-A134 TCGA-C8-A135 TCGA-C8-A137 TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HG 
        1.12         1.05         4.11        12.33        10.92        11.34 
TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HL TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A26V 
        0.16        12.03        10.42         2.30         3.25         0.30 
TCGA-C8-A26W TCGA-C8-A26X TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A274 TCGA-C8-A275 
        0.23         0.36         0.43         8.28         9.53         0.03 
TCGA-C8-A278 TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-C8-A8HP TCGA-C8-A8HQ 
        9.50         0.99         0.03         0.23        13.02        12.49 
TCGA-C8-A8HR TCGA-C8-A9FZ TCGA-D8-A13Y TCGA-D8-A140 TCGA-D8-A142 TCGA-D8-A145 
       13.41        19.46        11.90        13.25        13.97        13.48 
TCGA-D8-A147 TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JE 
       19.20        17.49        16.50        18.71        15.78        18.90 
TCGA-D8-A1JG TCGA-D8-A1JH TCGA-D8-A1JI TCGA-D8-A1JJ TCGA-D8-A1JM TCGA-D8-A1JN 
       12.03        14.01        18.97        20.09        19.40        20.38 
TCGA-D8-A1JP TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X6 TCGA-D8-A1X7 
       21.01        12.20        13.32        14.70        17.79        16.73 
TCGA-D8-A1X8 TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XD TCGA-D8-A1XG 
       25.74        27.58        18.15        12.39        17.16        14.73 
TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XQ TCGA-D8-A1XR 
       21.83        14.50        17.69        15.55        16.41        15.85 
TCGA-D8-A1XS TCGA-D8-A1XT TCGA-D8-A1XV TCGA-D8-A1XW TCGA-D8-A1XY TCGA-D8-A1Y0 
       16.31         6.35        15.16        12.66        16.54        15.52 
TCGA-D8-A1Y1 TCGA-D8-A1Y2 TCGA-D8-A1Y3 TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27G 
        9.93        14.24        14.14        17.42        16.04        13.45 
TCGA-D8-A27H TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27N 
       13.05        14.43         9.44        16.41        13.48         4.80 
TCGA-D8-A27P TCGA-D8-A27T TCGA-D8-A27V TCGA-D8-A3Z5 TCGA-D8-A4Z1 TCGA-D8-A73U 
        0.76        13.08        12.53        33.37        21.67        16.18 
TCGA-D8-A73W TCGA-D8-A73X TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A10A 
        8.02        12.10        43.00        34.42        27.52        40.41 
TCGA-E2-A10B TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14Q 
       37.51        28.44        28.87        47.15        44.68        38.24 
TCGA-E2-A14R TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14W TCGA-E2-A14X 
       38.60        33.17        33.30        43.33        32.02        31.96 
TCGA-E2-A14Y TCGA-E2-A150 TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A158 TCGA-E2-A159 
       28.60        25.41        21.04        23.87        14.79        25.05 
TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15J 
       22.82        17.29        21.63        18.21        12.92        19.40 
TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15O TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A15S 
       20.58        11.05        13.02        19.56        17.06        14.07 
TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 
       14.99        60.53        53.62        53.03        33.01        32.35 
TCGA-E2-A1B6 TCGA-E2-A1BC TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IG 
       28.50        16.47        17.10        38.30        37.41        32.78 
TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IU 
       33.70        28.44        22.65         3.88        22.19        11.08 
TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L8 TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LE 
       54.18        27.42        39.62        24.59        40.47        28.90 
TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A1LL TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A570 
      102.61         8.75        43.04         5.52        15.72        30.61 
TCGA-E2-A573 TCGA-E2-A574 TCGA-E2-A576 TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N8 
       34.92        26.56        34.29        34.82        32.88        12.00 
TCGA-E9-A1N9 TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NG TCGA-E9-A1QZ 
       13.12        39.55        12.59        35.77        25.84        11.90 
TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1R7 
       28.27        34.95         2.56         3.02         2.76        21.21 
TCGA-E9-A1RA TCGA-E9-A1RD TCGA-E9-A1RH TCGA-E9-A1RI TCGA-E9-A227 TCGA-E9-A228 
       32.09         1.12        34.59        35.64        32.05        12.53 
TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A22G TCGA-E9-A22H TCGA-E9-A243 
       13.32        39.09        22.75        23.51        20.71        17.06 
TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3QA 
        7.13        24.56         0.76        26.07        18.41        30.18 
TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A5UO TCGA-E9-A6HE TCGA-EW-A1IW TCGA-EW-A1IX 
       15.72        12.33        13.81        15.39        12.20        39.72 
TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J5 TCGA-EW-A1J6 
       18.21        18.90        13.25        16.57        15.68        28.77 
TCGA-EW-A1OV TCGA-EW-A1OW TCGA-EW-A1OX TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P4 
       25.94        22.82        29.95        41.13        39.78        29.82 
TCGA-EW-A1P5 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1P8 TCGA-EW-A1PA TCGA-EW-A1PB 
       23.11        18.48        30.08         7.86        18.90        19.99 
TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PF TCGA-EW-A1PH TCGA-EW-A2FR TCGA-EW-A2FW 
       13.94        10.52        14.43        19.96        55.00        22.09 
TCGA-EW-A3E8 TCGA-EW-A423 TCGA-EW-A424 TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2D9 
       34.03        10.16        23.51         7.40       109.87        59.57 
TCGA-GM-A2DA TCGA-GM-A2DC TCGA-GM-A2DD TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A2DI 
      216.76        83.34        75.02        70.85        72.10        85.15 
TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A2DO TCGA-GM-A3NW 
       86.96       115.69       106.06       101.62        85.35       110.50 
TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XL TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV 
       38.20        43.73        69.30        66.38        72.03        13.55 
TCGA-GM-A5PX TCGA-HN-A2NL TCGA-HN-A2OB TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LD-A66U 
       18.12         2.60        62.43        11.84        11.57        21.24 
TCGA-LD-A74U TCGA-LD-A7W5 TCGA-LD-A7W6 TCGA-LD-A9QF TCGA-LL-A440 TCGA-LL-A441 
       13.22         7.10        13.28        10.62        24.95        11.44 
TCGA-LL-A442 TCGA-LL-A50Y TCGA-LL-A5YL TCGA-LL-A5YP TCGA-LL-A6FP TCGA-LL-A6FR 
       10.95        25.05        17.06        14.79        22.26        16.08 
TCGA-LL-A73Y TCGA-LL-A73Z TCGA-LL-A740 TCGA-LL-A7SZ TCGA-LL-A7T0 TCGA-LL-A8F5 
       15.68         7.46        14.50        14.70        12.36        14.73 
TCGA-LL-A9Q3 TCGA-LQ-A4E4 TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5D7 TCGA-OL-A5D8 
       14.07        27.91         2.10        36.30        58.52        31.99 
TCGA-OL-A5DA TCGA-OL-A5RU TCGA-OL-A5RV TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5RZ 
       58.62        40.08        34.92        28.87        24.72        22.32 
TCGA-OL-A5S0 TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66K TCGA-OL-A66L 
       20.38        26.70        23.47        65.62        41.92        42.77 
TCGA-OL-A66N TCGA-OL-A66O TCGA-OL-A66P TCGA-OL-A6VO TCGA-OL-A6VQ TCGA-PE-A5DD 
       26.04        17.36        14.07        28.21        19.73        64.21 
TCGA-PE-A5DE TCGA-PL-A8LX TCGA-PL-A8LY TCGA-PL-A8LZ TCGA-S3-A6ZH TCGA-S3-AA0Z 
       86.96         0.16         0.26         9.93        16.93        16.80 
TCGA-S3-AA10 TCGA-S3-AA11 TCGA-S3-AA12 TCGA-S3-AA14 TCGA-S3-AA15 TCGA-S3-AA17 
       15.39        13.84        15.35        14.96        13.84        13.94 
TCGA-UU-A93S TCGA-W8-A86G TCGA-WT-AB41 TCGA-XX-A899 TCGA-XX-A89A TCGA-Z7-A8R5 
        3.81        11.41        52.96        15.35        16.04       108.07 

  AMP PEAK 21(14Q21.1) MUTATED AMP PEAK 21(14Q21.1) WILD-TYPE 
                          0.16                           0.03 
  AMP PEAK 21(14Q21.1) MUTATED AMP PEAK 21(14Q21.1) WILD-TYPE 
                        162.05                         234.28 
  AMP PEAK 21(14Q21.1) MUTATED AMP PEAK 21(14Q21.1) WILD-TYPE 
                        23.675                         24.625 
[1] "0.2 - 162.1 (23.7)" "0.0 - 234.3 (24.6)"
[1] "hr=" "1.2"
D21V2, continuous
                                vv
clus                             STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  AMP PEAK 21(14Q21.1) MUTATED        15       12        2        0        61
  AMP PEAK 21(14Q21.1) WILD-TYPE      74       69        6        3       292
                                vv
clus                             STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  AMP PEAK 21(14Q21.1) MUTATED          54         1         36          7
  AMP PEAK 21(14Q21.1) WILD-TYPE       191         1        114         22
                                vv
clus                             STAGE IIIC STAGE IV STAGE TIS STAGE X
  AMP PEAK 21(14Q21.1) MUTATED           18        6         0       3
  AMP PEAK 21(14Q21.1) WILD-TYPE         45       14         1      10
D21V3, multiclass
            clus
vv           AMP PEAK 21(14Q21.1) MUTATED AMP PEAK 21(14Q21.1) WILD-TYPE
  STAGE I                              15                             74
  STAGE IA                             12                             69
  STAGE IB                              2                              6
  STAGE II                              0                              3
  STAGE IIA                            61                            292
  STAGE IIB                            54                            191
  STAGE III                             1                              1
  STAGE IIIA                           36                            114
  STAGE IIIB                            7                             22
  STAGE IIIC                           18                             45
  STAGE IV                              6                             14
  STAGE TIS                             0                              1
  STAGE X                               3                             10
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              T1  T2  T3  T4
  AMP PEAK 21(14Q21.1) MUTATED    43 145  21   8
  AMP PEAK 21(14Q21.1) WILD-TYPE 229 471 109  32
D21V4, multiclass
    clus
vv   AMP PEAK 21(14Q21.1) MUTATED AMP PEAK 21(14Q21.1) WILD-TYPE
  T1                           43                            229
  T2                          145                            471
  T3                           21                            109
  T4                            8                             32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              N0  N1  N2  N3
  AMP PEAK 21(14Q21.1) MUTATED    86  73  32  21
  AMP PEAK 21(14Q21.1) WILD-TYPE 415 277  85  54
D21V5, multiclass
    clus
vv   AMP PEAK 21(14Q21.1) MUTATED AMP PEAK 21(14Q21.1) WILD-TYPE
  N0                           86                            415
  N1                           73                            277
  N2                           32                             85
  N3                           21                             54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D21V6, binary
                                cls
clus                               0   1
  AMP PEAK 21(14Q21.1) MUTATED   186   6
  AMP PEAK 21(14Q21.1) WILD-TYPE 693  15
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 21(14Q21.1) MUTATED    186    6
  AMP PEAK 21(14Q21.1) WILD-TYPE  693   15
   clus
vv  AMP PEAK 21(14Q21.1) MUTATED AMP PEAK 21(14Q21.1) WILD-TYPE
  0                          186                            693
  1                            6                             15
[1] 2 2
[1] FALSE
D21V7, binary
                                cls
clus                               0   1
  AMP PEAK 21(14Q21.1) MUTATED   215   2
  AMP PEAK 21(14Q21.1) WILD-TYPE 836   9
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 21(14Q21.1) MUTATED    215    2
  AMP PEAK 21(14Q21.1) WILD-TYPE  836    9
        clus
vv       AMP PEAK 21(14Q21.1) MUTATED AMP PEAK 21(14Q21.1) WILD-TYPE
  FEMALE                          215                            836
  MALE                              2                              9
[1] 2 2
[1] FALSE
                                vv
clus                             INFILTRATING CARCINOMA NOS
  AMP PEAK 21(14Q21.1) MUTATED                            0
  AMP PEAK 21(14Q21.1) WILD-TYPE                          1
                                vv
clus                             INFILTRATING DUCTAL CARCINOMA
  AMP PEAK 21(14Q21.1) MUTATED                             172
  AMP PEAK 21(14Q21.1) WILD-TYPE                           591
                                vv
clus                             INFILTRATING LOBULAR CARCINOMA
  AMP PEAK 21(14Q21.1) MUTATED                               23
  AMP PEAK 21(14Q21.1) WILD-TYPE                            169
                                vv
clus                             MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  AMP PEAK 21(14Q21.1) MUTATED                     0                     2
  AMP PEAK 21(14Q21.1) WILD-TYPE                   6                     2
                                vv
clus                             MIXED HISTOLOGY (PLEASE SPECIFY)
  AMP PEAK 21(14Q21.1) MUTATED                                  9
  AMP PEAK 21(14Q21.1) WILD-TYPE                               21
                                vv
clus                             MUCINOUS CARCINOMA OTHER  SPECIFY
  AMP PEAK 21(14Q21.1) MUTATED                    2              9
  AMP PEAK 21(14Q21.1) WILD-TYPE                 15             39
D21V8, multiclass
                                  clus
vv                                 AMP PEAK 21(14Q21.1) MUTATED
  INFILTRATING CARCINOMA NOS                                  0
  INFILTRATING DUCTAL CARCINOMA                             172
  INFILTRATING LOBULAR CARCINOMA                             23
  MEDULLARY CARCINOMA                                         0
  METAPLASTIC CARCINOMA                                       2
  MIXED HISTOLOGY (PLEASE SPECIFY)                            9
  MUCINOUS CARCINOMA                                          2
  OTHER  SPECIFY                                              9
                                  clus
vv                                 AMP PEAK 21(14Q21.1) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                    1
  INFILTRATING DUCTAL CARCINOMA                               591
  INFILTRATING LOBULAR CARCINOMA                              169
  MEDULLARY CARCINOMA                                           6
  METAPLASTIC CARCINOMA                                         2
  MIXED HISTOLOGY (PLEASE SPECIFY)                             21
  MUCINOUS CARCINOMA                                           15
  OTHER  SPECIFY                                               39
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D21V9, binary
                                cls
clus                               0   1
  AMP PEAK 21(14Q21.1) MUTATED    61 156
  AMP PEAK 21(14Q21.1) WILD-TYPE 227 618
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 21(14Q21.1) MUTATED     61  156
  AMP PEAK 21(14Q21.1) WILD-TYPE  227  618
     clus
vv    AMP PEAK 21(14Q21.1) MUTATED AMP PEAK 21(14Q21.1) WILD-TYPE
  NO                            61                            227
  YES                          156                            618
[1] 2 2
[1] FALSE
D21V10, continuous
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK 21(14Q21.1) MUTATED                                  0    13
  AMP PEAK 21(14Q21.1) WILD-TYPE                                1    47
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 21(14Q21.1) MUTATED                          38   137
  AMP PEAK 21(14Q21.1) WILD-TYPE                       132   599
D21V11, multiclass
                                  clus
vv                                 AMP PEAK 21(14Q21.1) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            0
  ASIAN                                                      13
  BLACK OR AFRICAN AMERICAN                                  38
  WHITE                                                     137
                                  clus
vv                                 AMP PEAK 21(14Q21.1) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              1
  ASIAN                                                        47
  BLACK OR AFRICAN AMERICAN                                   132
  WHITE                                                       599
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D21V12, binary
                                cls
clus                               0   1
  AMP PEAK 21(14Q21.1) MUTATED     4 174
  AMP PEAK 21(14Q21.1) WILD-TYPE  34 684
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 21(14Q21.1) MUTATED      4  174
  AMP PEAK 21(14Q21.1) WILD-TYPE   34  684
                        clus
vv                       AMP PEAK 21(14Q21.1) MUTATED
  HISPANIC OR LATINO                                4
  NOT HISPANIC OR LATINO                          174
                        clus
vv                       AMP PEAK 21(14Q21.1) WILD-TYPE
  HISPANIC OR LATINO                                 34
  NOT HISPANIC OR LATINO                            684
[1] 2 2
[1] FALSE

Clustering(22) Variable = AMP PEAK 22(15Q26.3) MUTATION ANALYSIS
D22V1, survival
                                sevent
clus2                              0   1
  AMP PEAK 22(15Q26.3) MUTATED   171  18
  AMP PEAK 22(15Q26.3) WILD-TYPE 745 110
  AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE 
                           189                            855 
  AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE 
                            18                            110 
$`AMP PEAK 22(15Q26.3) MUTATED`
TCGA-3C-AAAU TCGA-4H-AAAK TCGA-A1-A0SD TCGA-A1-A0SF TCGA-A1-A0SN TCGA-A2-A04P 
      129.14        11.44        14.37        48.10        39.32        18.02 
TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A0CV TCGA-A2-A0D0 TCGA-A2-A0D2 TCGA-A2-A0D4 
       73.84        87.25        98.99        67.33        33.76        25.22 
TCGA-A2-A0EV TCGA-A2-A0SU TCGA-A2-A0T2 TCGA-A2-A0YE TCGA-A2-A1FW TCGA-A2-A25B 
       31.82        54.64         8.38        18.21        17.36        42.44 
TCGA-A2-A25C TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XY TCGA-A2-A4RW TCGA-A7-A0CE 
       17.19        33.93        83.01        34.98         7.30        35.31 
TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A13F TCGA-A7-A3IY TCGA-A7-A4SA TCGA-A7-A4SE 
       37.45        35.67        25.15        11.34        14.93        21.17 
TCGA-A7-A6VV TCGA-A7-A6VW TCGA-A7-A6VX TCGA-A8-A06O TCGA-A8-A06Q TCGA-A8-A06R 
       10.29         9.37        10.42        13.02         1.02        17.98 
TCGA-A8-A06X TCGA-A8-A07P TCGA-A8-A07R TCGA-A8-A07U TCGA-A8-A085 TCGA-A8-A08B 
       31.00        10.98         8.98        24.99        36.95        38.01 
TCGA-A8-A08F TCGA-A8-A08G TCGA-A8-A08L TCGA-A8-A08P TCGA-A8-A08R TCGA-A8-A097 
       33.01        19.96         9.99        31.00         0.99        12.00 
TCGA-A8-A09E TCGA-A8-A09K TCGA-A8-A09M TCGA-AN-A04A TCGA-AN-A0AL TCGA-AN-A0AM 
       49.05        29.98        33.07         2.96         6.51         0.16 
TCGA-AN-A0AR TCGA-AN-A0AT TCGA-AN-A0FJ TCGA-AN-A0FW TCGA-AN-A0XU TCGA-AO-A03L 
        0.33         0.33         7.96         0.36         0.33        80.28 
TCGA-AO-A03P TCGA-AO-A03T TCGA-AO-A03V TCGA-AO-A0J4 TCGA-AO-A0JB TCGA-AO-A0JD 
       95.70        47.87        29.13        52.18        50.70        72.00 
TCGA-AO-A0JM TCGA-AO-A124 TCGA-AO-A129 TCGA-AO-A12D TCGA-AO-A1KQ TCGA-AQ-A04L 
       71.80       102.58       108.03        64.04        61.87       130.09 
TCGA-AR-A0TP TCGA-AR-A0TS TCGA-AR-A0TT TCGA-AR-A0TY TCGA-AR-A0U1 TCGA-AR-A0U2 
      111.32        74.79        86.66        55.86       101.95        83.87 
TCGA-AR-A0U4 TCGA-AR-A1AV TCGA-AR-A1AX TCGA-AR-A24K TCGA-AR-A24Q TCGA-AR-A24S 
       85.97        61.28        62.14        50.89       104.28        97.84 
TCGA-AR-A24Z TCGA-AR-A251 TCGA-AR-A254 TCGA-AR-A2LH TCGA-AR-A2LR TCGA-B6-A0I5 
       79.00        78.48        72.76        20.25        20.38       149.59 
TCGA-B6-A0IJ TCGA-B6-A0IM TCGA-B6-A0IO TCGA-B6-A0RG TCGA-B6-A0WT TCGA-BH-A0AU 
      176.98       126.12       110.14        68.45       188.68        24.53 
TCGA-BH-A0AV TCGA-BH-A0AZ TCGA-BH-A0BF TCGA-BH-A0BG TCGA-BH-A0BP TCGA-BH-A0BR 
       59.84        28.50        25.71        24.85        48.69        53.69 
TCGA-BH-A0C0 TCGA-BH-A0DL TCGA-BH-A0DS TCGA-BH-A0EE TCGA-BH-A0GY TCGA-BH-A0WA 
       41.75        48.23         2.56        31.00        30.35        23.05 
TCGA-BH-A18N TCGA-BH-A18V TCGA-BH-A1EW TCGA-BH-A1F6 TCGA-BH-A1FD TCGA-BH-A1FH 
       37.74        51.16        55.69        97.48        33.17        36.92 
TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-C8-A12O TCGA-C8-A130 TCGA-C8-A132 TCGA-C8-A1HG 
       18.64        23.51        12.66         3.16         1.87        11.34 
TCGA-C8-A1HI TCGA-C8-A1HJ TCGA-C8-A1HL TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A26X 
       11.28         0.16        10.42         2.30         3.25         0.36 
TCGA-C8-A26Z TCGA-C8-A27A TCGA-D8-A13Y TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JP 
        8.28        12.20        11.90        16.50        18.71        21.01 
TCGA-D8-A1X9 TCGA-D8-A1XK TCGA-D8-A27H TCGA-D8-A27N TCGA-D8-A27R TCGA-E2-A10A 
       23.90        14.50        13.05         4.80        10.09        40.41 
TCGA-E2-A14T TCGA-E2-A14W TCGA-E2-A152 TCGA-E2-A15A TCGA-E2-A15D TCGA-E2-A15E 
       33.30        32.02        27.12        23.34        17.29        20.71 
TCGA-E2-A15L TCGA-E2-A1IL TCGA-E2-A1L7 TCGA-E2-A1LA TCGA-E2-A1LH TCGA-E2-A1LI 
       20.58         3.88        27.42        24.59       106.75       102.61 
TCGA-E2-A1LL TCGA-E2-A56Z TCGA-E9-A1N8 TCGA-E9-A1N9 TCGA-E9-A1NF TCGA-E9-A1NI 
       43.04         8.28        12.00        13.12        35.24         9.86 
TCGA-E9-A1R0 TCGA-E9-A1R3 TCGA-E9-A1RA TCGA-E9-A1RC TCGA-E9-A1RF TCGA-E9-A2JS 
       28.27         2.56        32.09        40.24         6.58        29.72 
TCGA-E9-A3QA TCGA-E9-A54X TCGA-E9-A5UO TCGA-EW-A1IY TCGA-EW-A1J6 TCGA-EW-A1OW 
       30.18        12.33        13.81         8.48        28.77        22.82 
TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A1PB TCGA-EW-A3U0 TCGA-GM-A2DD TCGA-GM-A2DF 
       29.82        23.11        19.99        17.49        75.02        70.85 
TCGA-GM-A2DK TCGA-LL-A441 TCGA-LL-A5YM TCGA-LL-A5YP TCGA-LL-A6FR TCGA-LL-A8F5 
       86.96        11.44        15.32        14.79        16.08        14.73 
TCGA-LL-A9Q3 TCGA-OL-A5RV TCGA-OL-A5RW TCGA-OL-A6VO TCGA-PE-A5DC TCGA-PL-A8LX 
       14.07        34.92        36.36        28.21        47.01         0.16 
TCGA-S3-AA15 TCGA-UL-AAZ6 TCGA-W8-A86G 
       13.84        17.03        11.41 

$`AMP PEAK 22(15Q26.3) WILD-TYPE`
TCGA-3C-AALI TCGA-3C-AALJ TCGA-3C-AALK TCGA-5L-AAT0 TCGA-5L-AAT1 TCGA-5T-A9QA 
      131.67        42.81        40.14        48.56        48.36         9.96 
TCGA-A1-A0SB TCGA-A1-A0SE TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI TCGA-A1-A0SJ 
        8.52        43.43        14.27        47.24        20.88        13.68 
TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SO TCGA-A1-A0SP TCGA-A1-A0SQ TCGA-A2-A04N 
       31.79         7.96        28.01        19.20        18.21       104.81 
TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04V TCGA-A2-A04W TCGA-A2-A04X TCGA-A2-A04Y 
       78.41       121.94        63.12       101.98        55.43        36.13 
TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CQ 
      136.73        99.12        24.79       114.81        92.48        88.60 
TCGA-A2-A0CR TCGA-A2-A0CS TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CW TCGA-A2-A0CX 
      107.93        75.55        75.25         5.19       107.93        56.81 
TCGA-A2-A0D1 TCGA-A2-A0D3 TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP 
       34.55        61.58       101.72       134.40        80.28       107.61 
TCGA-A2-A0EQ TCGA-A2-A0ER TCGA-A2-A0ES TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EW 
       79.76        74.40        72.00        35.05        34.29        61.94 
TCGA-A2-A0EX TCGA-A2-A0EY TCGA-A2-A0ST TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0SX 
       24.72        63.29        99.19        27.12        44.88        50.43 
TCGA-A2-A0SY TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T3 TCGA-A2-A0T4 TCGA-A2-A0T5 
       44.28        17.52        17.13        49.84        20.52        17.46 
TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YF TCGA-A2-A0YG 
       18.90        20.75        32.55        25.28        50.47        21.90 
TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A0YM 
       21.67        49.48        18.61        19.33        48.46        31.73 
TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FX TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G1 
       23.77        23.47        60.72        22.45        20.25        19.20 
TCGA-A2-A1G4 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25A TCGA-A2-A25D TCGA-A2-A25E 
       19.56        16.47        52.47       107.70        18.15       105.34 
TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW 
       10.59        20.88        39.65        29.98        32.75        49.48 
TCGA-A2-A3XX TCGA-A2-A3XZ TCGA-A2-A3Y0 TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 
       47.31        50.37        38.37        24.39        21.30        23.21 
TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CD TCGA-A7-A0CG TCGA-A7-A0CH 
       26.96        21.14        21.90        38.30        34.29        35.47 
TCGA-A7-A0CJ TCGA-A7-A0DB TCGA-A7-A0DC TCGA-A7-A13D TCGA-A7-A13E TCGA-A7-A13G 
       30.61        33.11        29.79        31.73        20.19        23.61 
TCGA-A7-A13H TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26G TCGA-A7-A26H TCGA-A7-A26I 
       29.56        31.36        24.26        23.74        23.80        21.73 
TCGA-A7-A26J TCGA-A7-A2KD TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3J1 TCGA-A7-A3RF 
       20.61        22.32        10.59        10.29        11.28        13.41 
TCGA-A7-A425 TCGA-A7-A426 TCGA-A7-A4SB TCGA-A7-A4SD TCGA-A7-A4SF TCGA-A7-A56D 
       14.70        11.97        13.74        14.50        17.92        14.73 
TCGA-A7-A5ZV TCGA-A7-A5ZW TCGA-A7-A5ZX TCGA-A7-A6VY TCGA-A8-A06P TCGA-A8-A06T 
       12.10        10.72        11.05         8.75        13.02        53.06 
TCGA-A8-A06U TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A079 
       29.03        26.01         1.02        17.03        53.98         9.01 
TCGA-A8-A07B TCGA-A8-A07E TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07J 
       43.00        19.99        18.97        18.97        14.01        12.00 
TCGA-A8-A07L TCGA-A8-A07O TCGA-A8-A07S TCGA-A8-A07W TCGA-A8-A07Z TCGA-A8-A082 
       32.05         9.99         7.99         9.99        45.07        18.05 
TCGA-A8-A084 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08C TCGA-A8-A08I TCGA-A8-A08J 
       15.06        13.02         0.99        28.96        12.00        37.05 
TCGA-A8-A08O TCGA-A8-A08S TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A08Z TCGA-A8-A091 
       31.00        33.01       112.08        43.00        40.01        33.01 
TCGA-A8-A092 TCGA-A8-A093 TCGA-A8-A095 TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09B 
       30.97        17.95        41.98         9.99         9.99        12.00 
TCGA-A8-A09C TCGA-A8-A09D TCGA-A8-A09I TCGA-A8-A09N TCGA-A8-A09Q TCGA-A8-A09R 
        1.02        50.04        45.07         1.02        25.02         8.98 
TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0A2 
       19.04        15.02         0.99        14.01        12.00        19.04 
TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A7 TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-A8-A0AD 
       13.02        21.04         0.99        27.02        17.03        38.04 
TCGA-AC-A23C TCGA-AC-A23E TCGA-AC-A23G TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2BK 
        0.95         2.37        10.85         5.72         1.48        38.53 
TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM 
       99.35        40.57        55.43        36.99        38.79        26.04 
TCGA-AC-A2FO TCGA-AC-A2QH TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3HN 
       50.70        33.04         0.92         2.27        32.45        16.31 
TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3TN TCGA-AC-A3W5 TCGA-AC-A3W6 TCGA-AC-A3YI 
       14.83        22.19        14.99        16.57        19.79        23.24 
TCGA-AC-A3YJ TCGA-AC-A5XS TCGA-AC-A62V TCGA-AC-A62X TCGA-AC-A62Y TCGA-AC-A6IV 
       24.79         1.55        11.44        13.71        17.42        18.67 
TCGA-AC-A6IW TCGA-AC-A6IX TCGA-AC-A6NO TCGA-AC-A7VB TCGA-AC-A7VC TCGA-AC-A8OP 
       13.58        12.26         1.68         8.22         0.03        20.19 
TCGA-AC-A8OQ TCGA-AC-A8OR TCGA-AC-A8OS TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A041 
        1.12         1.32         2.30         0.33         0.33         0.23 
TCGA-AN-A046 TCGA-AN-A049 TCGA-AN-A04C TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AK 
        0.33         0.62         1.78         1.71         9.96         7.36 
TCGA-AN-A0AS TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FN 
        0.33         6.44         5.65         7.00         7.59         7.17 
TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FX TCGA-AN-A0FY TCGA-AN-A0FZ 
        6.28         7.04         0.33         0.33         0.33         0.33 
TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS 
        0.33         0.33        12.33         0.30         0.33         0.33 
TCGA-AN-A0XT TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03M TCGA-AO-A03N TCGA-AO-A03O 
        0.33         5.33         5.59        61.35        66.77        81.63 
TCGA-AO-A03R TCGA-AO-A03U TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J5 TCGA-AO-A0J6 
       68.75        58.95        32.78        21.40        26.04        37.48 
TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JC TCGA-AO-A0JE 
       20.32        22.36        53.03        21.53        50.86        76.77 
TCGA-AO-A0JF TCGA-AO-A0JG TCGA-AO-A0JI TCGA-AO-A0JJ TCGA-AO-A0JL TCGA-AO-A125 
       21.37        26.24        50.24        62.04        55.33        99.25 
TCGA-AO-A126 TCGA-AO-A128 TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12E TCGA-AO-A12F 
      108.72       106.78        90.58        98.27        57.30        48.36 
TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KR TCGA-AO-A1KS 
       41.62        28.37        14.73        82.62        70.39         0.53 
TCGA-AO-A1KT TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A0Y5 TCGA-AQ-A1H2 TCGA-AQ-A1H3 
       17.79        24.79        26.93         5.65        15.62        32.52 
TCGA-AQ-A54N TCGA-AQ-A54O TCGA-AQ-A7U7 TCGA-AR-A0TQ TCGA-AR-A0TR TCGA-AR-A0TV 
        2.56        32.91        19.20        73.64         5.26        42.35 
TCGA-AR-A0TW TCGA-AR-A0TX TCGA-AR-A0TZ TCGA-AR-A0U0 TCGA-AR-A0U3 TCGA-AR-A1AH 
       98.93        64.83       107.24        65.36       114.02        75.55 
TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AM TCGA-AR-A1AN 
       61.84        52.77        51.25        48.82        76.11        43.73 
TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AQ TCGA-AR-A1AR TCGA-AR-A1AS TCGA-AR-A1AU 
       43.56        39.98        43.07        17.23        37.81        76.21 
TCGA-AR-A1AW TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24N 
       63.62        33.73       160.90        94.22        96.89        78.51 
TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24R TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24V 
       84.20         2.76        87.22        76.01        53.36        85.35 
TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A250 TCGA-AR-A252 TCGA-AR-A255 TCGA-AR-A256 
       50.96        83.77        89.00        73.18        58.92        93.83 
TCGA-AR-A2LE TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LL TCGA-AR-A2LM TCGA-AR-A2LN 
      143.21        62.86        54.21        66.15        52.11        38.17 
TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A5QM TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ 
       39.39        40.54        54.74        16.04        20.45        10.59 
TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I9 TCGA-B6-A0IA TCGA-B6-A0IB TCGA-B6-A0IC 
       77.62       143.38        12.13       220.90       129.57        50.70 
TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0IK TCGA-B6-A0IN TCGA-B6-A0IP 
       65.72       146.50       112.37        18.77        84.59       110.93 
TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RL TCGA-B6-A0RM 
      140.88       211.56       189.01       234.28        81.17        78.02 
TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RS TCGA-B6-A0RT 
      172.96       162.05       102.77       140.48       100.70        89.46 
TCGA-B6-A0RU TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0WX 
      131.21       157.41        97.48        79.63        18.35        21.47 
TCGA-B6-A0WY TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 
      113.79       129.57       129.70       186.48        28.27        68.94 
TCGA-B6-A0X7 TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A1KN TCGA-B6-A2IU 
       58.88        43.59       101.52        73.51       139.17       170.17 
TCGA-B6-A401 TCGA-B6-A402 TCGA-B6-A408 TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AW 
       85.35        74.99        68.12       103.63        71.15        20.45 
TCGA-BH-A0AY TCGA-BH-A0B0 TCGA-BH-A0B2 TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B5 
       25.55        46.95        40.83        39.55        39.16        48.36 
TCGA-BH-A0B6 TCGA-BH-A0B7 TCGA-BH-A0B9 TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BD 
       56.94        56.98        51.68        37.22        32.02        18.21 
TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BQ TCGA-BH-A0BS 
       21.70        44.05        61.68        35.67        27.19        53.95 
TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0BW TCGA-BH-A0BZ TCGA-BH-A0C1 TCGA-BH-A0C3 
       45.57        49.94        11.67        49.05        44.02        48.13 
TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DI 
       42.90        45.83        31.17        23.44        38.01        22.13 
TCGA-BH-A0DK TCGA-BH-A0DO TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0DT TCGA-BH-A0DV 
       13.91        17.26        15.65         3.22        38.47        67.86 
TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E6 
       47.41        16.27         4.41        15.68        14.30         9.63 
TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EA TCGA-BH-A0EB TCGA-BH-A0EI TCGA-BH-A0GZ 
       44.81        46.19        32.58        24.49        24.43        10.78 
TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H7 TCGA-BH-A0H9 
       15.16        37.78        35.51        24.56        23.08        41.00 
TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HO TCGA-BH-A0HP 
       52.96        26.50        20.38         5.85         2.50        13.61 
TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0RX 
       36.85        12.89        51.32        27.25        50.79         5.59 
TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A18F TCGA-BH-A18G 
       23.93        24.95        42.35        44.81         8.81         2.01 
TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18M TCGA-BH-A18P 
        7.23        20.12        90.84        26.66        72.56        30.28 
TCGA-BH-A18Q TCGA-BH-A18R TCGA-BH-A18S TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A1EN 
       55.63        37.55        66.05         7.36        51.39        69.93 
TCGA-BH-A1EO TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EX 
       91.99       113.82        82.85        42.28        12.00        49.58 
TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F2 TCGA-BH-A1F5 TCGA-BH-A1F8 TCGA-BH-A1FB 
       17.69        25.81        31.53        89.16        24.66       120.62 
TCGA-BH-A1FC TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FM 
      114.15        74.73       122.89        63.35        55.00        45.63 
TCGA-BH-A1FN TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A203 
       72.07       144.59        72.07        28.14        26.14        38.60 
TCGA-BH-A204 TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 
       83.31        57.83       130.16        10.65         6.44        20.12 
TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A6R8 TCGA-BH-A6R9 TCGA-BH-A8FY 
       10.52       109.28         8.94         9.63         5.26         9.70 
TCGA-BH-A8FZ TCGA-BH-A8G0 TCGA-BH-AB28 TCGA-C8-A12L TCGA-C8-A12M TCGA-C8-A12N 
       18.87        21.76         9.44        11.93        11.77        11.77 
TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12U TCGA-C8-A12V TCGA-C8-A12W TCGA-C8-A12X 
       11.77        12.66        12.66        12.66        12.66        12.66 
TCGA-C8-A12Z TCGA-C8-A131 TCGA-C8-A134 TCGA-C8-A135 TCGA-C8-A137 TCGA-C8-A138 
        0.39         2.24         1.12         1.05         4.11         4.08 
TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HK TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A26Y 
       12.33        10.92        12.03         0.30         0.23         0.43 
TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A27B TCGA-C8-A3M7 
        9.67         9.53         0.03         9.50         0.99         0.03 
TCGA-C8-A3M8 TCGA-C8-A8HP TCGA-C8-A8HQ TCGA-C8-A8HR TCGA-C8-A9FZ TCGA-D8-A13Z 
        0.23        13.02        12.49        13.41        19.46        20.88 
TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A145 TCGA-D8-A146 
       13.25        20.58        13.97        14.17        13.48        21.14 
TCGA-D8-A147 TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JC TCGA-D8-A1JD TCGA-D8-A1JE 
       19.20        14.17        17.49        15.78        18.15        18.90 
TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JH TCGA-D8-A1JI TCGA-D8-A1JJ TCGA-D8-A1JK 
       12.03        12.03        14.01        18.97        20.09        20.12 
TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU 
       20.09        19.40        20.38        12.20        13.32        14.70 
TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1XA TCGA-D8-A1XB 
       18.58        17.79        16.73        25.74        27.58        18.15 
TCGA-D8-A1XC TCGA-D8-A1XD TCGA-D8-A1XF TCGA-D8-A1XG TCGA-D8-A1XJ TCGA-D8-A1XL 
       12.39        17.16        15.22        14.73        21.83        19.92 
TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XQ TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XT 
       17.69        15.55        16.41        15.85        16.31         6.35 
TCGA-D8-A1XU TCGA-D8-A1XV TCGA-D8-A1XW TCGA-D8-A1XY TCGA-D8-A1XZ TCGA-D8-A1Y0 
       12.99        15.16        12.66        16.54        15.32        15.52 
TCGA-D8-A1Y1 TCGA-D8-A1Y2 TCGA-D8-A1Y3 TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27G 
        9.93        14.24        14.14        17.42        16.04        13.45 
TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27P TCGA-D8-A27T 
       14.43         9.44        16.41        13.48         0.76        13.08 
TCGA-D8-A27V TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-D8-A73U 
       12.53        12.26        33.37        18.51        21.67        16.18 
TCGA-D8-A73W TCGA-D8-A73X TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A109 
        8.02        12.10        43.00        34.42        27.52        46.59 
TCGA-E2-A10B TCGA-E2-A10C TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14O 
       37.51        40.11        28.44        28.87        47.15        44.68 
TCGA-E2-A14P TCGA-E2-A14Q TCGA-E2-A14R TCGA-E2-A14S TCGA-E2-A14U TCGA-E2-A14V 
       40.96        38.24        38.60        33.17        43.33        34.26 
TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A153 TCGA-E2-A154 
       31.96        28.60        18.51        25.41        23.24        19.43 
TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A158 TCGA-E2-A159 TCGA-E2-A15C TCGA-E2-A15F 
       21.04        23.87        14.79        25.05        22.82        21.63 
TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15M 
       18.21        12.92        17.42        19.40         9.04        11.05 
TCGA-E2-A15O TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1AZ 
       13.02        19.56        17.06        14.07        14.99        60.53 
TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BC 
       53.62        53.03        33.01        32.35        28.50        16.47 
TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1IH TCGA-E2-A1II 
       17.10        38.30        37.41        32.78        33.73        33.70 
TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IN TCGA-E2-A1IO TCGA-E2-A1IU TCGA-E2-A1L6 
       28.44        22.65        22.19        20.98        11.08        54.18 
TCGA-E2-A1L8 TCGA-E2-A1L9 TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LG TCGA-E2-A1LK 
       39.62        19.66        40.47        28.90        18.87         8.75 
TCGA-E2-A2P5 TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A570 TCGA-E2-A573 TCGA-E2-A574 
       16.93         5.52        15.72        30.61        34.92        26.56 
TCGA-E2-A576 TCGA-E2-A9RU TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N6 
       34.29        12.85        34.82        32.88        36.82        13.48 
TCGA-E9-A1NA TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NG TCGA-E9-A1QZ 
       36.56        39.55        12.59        35.77        25.84        11.90 
TCGA-E9-A1R2 TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RB 
       34.95         6.12         3.02         2.76        21.21        32.09 
TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RG TCGA-E9-A1RH TCGA-E9-A1RI TCGA-E9-A226 
        1.12        34.65        21.27        34.59        35.64        34.13 
TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A22D 
       32.05        12.53        13.32        39.09        22.75        41.03 
TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A244 TCGA-E9-A247 
       12.89        23.51        20.71        17.06         0.69        27.22 
TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A295 TCGA-E9-A2JT TCGA-E9-A3HO 
        1.94         7.13        24.56         0.72         0.76        26.07 
TCGA-E9-A3Q9 TCGA-E9-A3X8 TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UP 
       18.41        15.72        23.84        14.70         0.79        14.40 
TCGA-E9-A6HE TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 
       15.39        12.20        39.72        18.21        18.90        13.25 
TCGA-EW-A1J3 TCGA-EW-A1J5 TCGA-EW-A1OV TCGA-EW-A1OX TCGA-EW-A1OY TCGA-EW-A1OZ 
       16.57        15.68        25.94        29.95        29.85        40.41 
TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P3 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1P8 
       41.13        39.78        52.96        18.48        30.08         7.86 
TCGA-EW-A1PA TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PF TCGA-EW-A1PG 
       18.90         6.15        13.94        10.52        14.43        34.55 
TCGA-EW-A1PH TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A2FW TCGA-EW-A3E8 
       19.96        55.00        52.73        25.91        22.09        34.03 
TCGA-EW-A423 TCGA-EW-A424 TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2D9 TCGA-GM-A2DA 
       10.16        23.51         7.40       109.87        59.57       216.76 
TCGA-GM-A2DB TCGA-GM-A2DC TCGA-GM-A2DH TCGA-GM-A2DI TCGA-GM-A2DL TCGA-GM-A2DM 
       79.10        83.34        72.10        85.15       115.69       106.06 
TCGA-GM-A2DN TCGA-GM-A2DO TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XL 
      101.62        85.35       110.50        38.20        43.73        69.30 
TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2NL TCGA-HN-A2OB 
       66.38        72.03        13.55        18.12         2.60        62.43 
TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LD-A66U TCGA-LD-A74U TCGA-LD-A7W5 TCGA-LD-A7W6 
       11.84        11.57        21.24        13.22         7.10        13.28 
TCGA-LD-A9QF TCGA-LL-A440 TCGA-LL-A442 TCGA-LL-A50Y TCGA-LL-A5YL TCGA-LL-A5YN 
       10.62        24.95        10.95        25.05        17.06        14.70 
TCGA-LL-A5YO TCGA-LL-A6FP TCGA-LL-A6FQ TCGA-LL-A73Y TCGA-LL-A73Z TCGA-LL-A740 
       14.47        22.26         2.63        15.68         7.46        14.50 
TCGA-LL-A7SZ TCGA-LL-A7T0 TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D6 
       14.70        12.36        27.91        22.39         2.10        36.30 
TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RU TCGA-OL-A5RX TCGA-OL-A5RY 
       58.52        31.99        58.62        40.08        28.87        24.72 
TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66K 
       22.32        20.38        26.70        23.47        65.62        41.92 
TCGA-OL-A66L TCGA-OL-A66N TCGA-OL-A66O TCGA-OL-A66P TCGA-OL-A6VQ TCGA-OL-A6VR 
       42.77        26.04        17.36        14.07        19.73        40.11 
TCGA-OL-A97C TCGA-PE-A5DD TCGA-PE-A5DE TCGA-PL-A8LY TCGA-PL-A8LZ TCGA-S3-A6ZF 
        8.91        64.21        86.96         0.26         9.93        16.50 
TCGA-S3-A6ZG TCGA-S3-A6ZH TCGA-S3-AA0Z TCGA-S3-AA10 TCGA-S3-AA11 TCGA-S3-AA12 
       13.12        16.93        16.80        15.39        13.84        15.35 
TCGA-S3-AA14 TCGA-S3-AA17 TCGA-UU-A93S TCGA-WT-AB41 TCGA-WT-AB44 TCGA-XX-A899 
       14.96        13.94         3.81        52.96        29.03        15.35 
TCGA-XX-A89A TCGA-Z7-A8R5 TCGA-Z7-A8R6 
       16.04       108.07       107.05 

  AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE 
                          0.16                           0.03 
  AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE 
                        188.68                         234.28 
  AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE 
                         27.42                          23.80 
[1] "0.2 - 188.7 (27.4)" "0.0 - 234.3 (23.8)"
[1] "hr=" "1.4"
D22V2, continuous
                                vv
clus                             STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  AMP PEAK 22(15Q26.3) MUTATED        18       10        0        0        68
  AMP PEAK 22(15Q26.3) WILD-TYPE      71       71        8        3       285
                                vv
clus                             STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  AMP PEAK 22(15Q26.3) MUTATED          44         1         29          5
  AMP PEAK 22(15Q26.3) WILD-TYPE       201         1        121         24
                                vv
clus                             STAGE IIIC STAGE IV STAGE TIS STAGE X
  AMP PEAK 22(15Q26.3) MUTATED           11        4         0       1
  AMP PEAK 22(15Q26.3) WILD-TYPE         52       16         1      12
D22V3, multiclass
            clus
vv           AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  STAGE I                              18                             71
  STAGE IA                             10                             71
  STAGE IB                              0                              8
  STAGE II                              0                              3
  STAGE IIA                            68                            285
  STAGE IIB                            44                            201
  STAGE III                             1                              1
  STAGE IIIA                           29                            121
  STAGE IIIB                            5                             24
  STAGE IIIC                           11                             52
  STAGE IV                              4                             16
  STAGE TIS                             0                              1
  STAGE X                               1                             12
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              T1  T2  T3  T4
  AMP PEAK 22(15Q26.3) MUTATED    40 120  23   9
  AMP PEAK 22(15Q26.3) WILD-TYPE 232 496 107  31
D22V4, multiclass
    clus
vv   AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  T1                           40                            232
  T2                          120                            496
  T3                           23                            107
  T4                            9                             31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              N0  N1  N2  N3
  AMP PEAK 22(15Q26.3) MUTATED    91  62  24  13
  AMP PEAK 22(15Q26.3) WILD-TYPE 410 288  93  62
D22V5, multiclass
    clus
vv   AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  N0                           91                            410
  N1                           62                            288
  N2                           24                             93
  N3                           13                             62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D22V6, binary
                                cls
clus                               0   1
  AMP PEAK 22(15Q26.3) MUTATED   168   4
  AMP PEAK 22(15Q26.3) WILD-TYPE 711  17
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 22(15Q26.3) MUTATED    168    4
  AMP PEAK 22(15Q26.3) WILD-TYPE  711   17
   clus
vv  AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  0                          168                            711
  1                            4                             17
[1] 2 2
[1] FALSE
D22V7, binary
                                cls
clus                               0   1
  AMP PEAK 22(15Q26.3) MUTATED   189   4
  AMP PEAK 22(15Q26.3) WILD-TYPE 862   7
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 22(15Q26.3) MUTATED    189    4
  AMP PEAK 22(15Q26.3) WILD-TYPE  862    7
        clus
vv       AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  FEMALE                          189                            862
  MALE                              4                              7
[1] 2 2
[1] FALSE
                                vv
clus                             INFILTRATING CARCINOMA NOS
  AMP PEAK 22(15Q26.3) MUTATED                            0
  AMP PEAK 22(15Q26.3) WILD-TYPE                          1
                                vv
clus                             INFILTRATING DUCTAL CARCINOMA
  AMP PEAK 22(15Q26.3) MUTATED                             166
  AMP PEAK 22(15Q26.3) WILD-TYPE                           597
                                vv
clus                             INFILTRATING LOBULAR CARCINOMA
  AMP PEAK 22(15Q26.3) MUTATED                               11
  AMP PEAK 22(15Q26.3) WILD-TYPE                            181
                                vv
clus                             MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  AMP PEAK 22(15Q26.3) MUTATED                     3                     0
  AMP PEAK 22(15Q26.3) WILD-TYPE                   3                     4
                                vv
clus                             MIXED HISTOLOGY (PLEASE SPECIFY)
  AMP PEAK 22(15Q26.3) MUTATED                                  4
  AMP PEAK 22(15Q26.3) WILD-TYPE                               26
                                vv
clus                             MUCINOUS CARCINOMA OTHER  SPECIFY
  AMP PEAK 22(15Q26.3) MUTATED                    3              5
  AMP PEAK 22(15Q26.3) WILD-TYPE                 14             43
D22V8, multiclass
                                  clus
vv                                 AMP PEAK 22(15Q26.3) MUTATED
  INFILTRATING CARCINOMA NOS                                  0
  INFILTRATING DUCTAL CARCINOMA                             166
  INFILTRATING LOBULAR CARCINOMA                             11
  MEDULLARY CARCINOMA                                         3
  METAPLASTIC CARCINOMA                                       0
  MIXED HISTOLOGY (PLEASE SPECIFY)                            4
  MUCINOUS CARCINOMA                                          3
  OTHER  SPECIFY                                              5
                                  clus
vv                                 AMP PEAK 22(15Q26.3) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                    1
  INFILTRATING DUCTAL CARCINOMA                               597
  INFILTRATING LOBULAR CARCINOMA                              181
  MEDULLARY CARCINOMA                                           3
  METAPLASTIC CARCINOMA                                         4
  MIXED HISTOLOGY (PLEASE SPECIFY)                             26
  MUCINOUS CARCINOMA                                           14
  OTHER  SPECIFY                                               43
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D22V9, binary
                                cls
clus                               0   1
  AMP PEAK 22(15Q26.3) MUTATED    57 136
  AMP PEAK 22(15Q26.3) WILD-TYPE 231 638
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 22(15Q26.3) MUTATED     57  136
  AMP PEAK 22(15Q26.3) WILD-TYPE  231  638
     clus
vv    AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  NO                            57                            231
  YES                          136                            638
[1] 2 2
[1] FALSE
D22V10, continuous
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK 22(15Q26.3) MUTATED                                  0    16
  AMP PEAK 22(15Q26.3) WILD-TYPE                                1    44
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 22(15Q26.3) MUTATED                          38   118
  AMP PEAK 22(15Q26.3) WILD-TYPE                       132   618
D22V11, multiclass
                                  clus
vv                                 AMP PEAK 22(15Q26.3) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            0
  ASIAN                                                      16
  BLACK OR AFRICAN AMERICAN                                  38
  WHITE                                                     118
                                  clus
vv                                 AMP PEAK 22(15Q26.3) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              1
  ASIAN                                                        44
  BLACK OR AFRICAN AMERICAN                                   132
  WHITE                                                       618
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D22V12, binary
                                cls
clus                               0   1
  AMP PEAK 22(15Q26.3) MUTATED     4 157
  AMP PEAK 22(15Q26.3) WILD-TYPE  34 701
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 22(15Q26.3) MUTATED      4  157
  AMP PEAK 22(15Q26.3) WILD-TYPE   34  701
                        clus
vv                       AMP PEAK 22(15Q26.3) MUTATED
  HISPANIC OR LATINO                                4
  NOT HISPANIC OR LATINO                          157
                        clus
vv                       AMP PEAK 22(15Q26.3) WILD-TYPE
  HISPANIC OR LATINO                                 34
  NOT HISPANIC OR LATINO                            701
[1] 2 2
[1] FALSE

Clustering(23) Variable = AMP PEAK 23(17P11.2) MUTATION ANALYSIS
D23V1, survival
                                sevent
clus2                              0   1
  AMP PEAK 23(17P11.2) MUTATED   125  21
  AMP PEAK 23(17P11.2) WILD-TYPE 791 107
  AMP PEAK 23(17P11.2) MUTATED AMP PEAK 23(17P11.2) WILD-TYPE 
                           146                            898 
  AMP PEAK 23(17P11.2) MUTATED AMP PEAK 23(17P11.2) WILD-TYPE 
                            21                            107 
$`AMP PEAK 23(17P11.2) MUTATED`
TCGA-4H-AAAK TCGA-5T-A9QA TCGA-A1-A0SN TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EV 
       11.44         9.96        39.32        35.05        34.29        31.82 
TCGA-A2-A0EY TCGA-A2-A0SY TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YG TCGA-A2-A0YJ 
       63.29        44.28        20.75        32.55        21.90        18.61 
TCGA-A2-A0YM TCGA-A2-A1FV TCGA-A2-A1FX TCGA-A2-A25B TCGA-A2-A3XU TCGA-A2-A3XX 
       31.73        23.47        60.72        42.44        29.98        47.31 
TCGA-A7-A0CD TCGA-A7-A0DC TCGA-A7-A13F TCGA-A7-A13H TCGA-A7-A26J TCGA-A7-A3J0 
       38.30        29.79        25.15        29.56        20.61        10.29 
TCGA-A7-A6VV TCGA-A8-A06Q TCGA-A8-A07P TCGA-A8-A07W TCGA-A8-A086 TCGA-A8-A08G 
       10.29         1.02        10.98         9.99        13.02        19.96 
TCGA-A8-A08S TCGA-A8-A08X TCGA-A8-A093 TCGA-A8-A09B TCGA-A8-A09E TCGA-A8-A09R 
       33.01        43.00        17.95        12.00        49.05         8.98 
TCGA-A8-A09X TCGA-AC-A23G TCGA-AC-A2QH TCGA-AC-A8OP TCGA-AN-A0FT TCGA-AN-A0FV 
       14.01        10.85        33.04        20.19         7.04         0.33 
TCGA-AN-A0XT TCGA-AO-A03L TCGA-AO-A0J7 TCGA-AO-A0JD TCGA-AO-A0JL TCGA-AO-A12B 
        0.33        80.28        20.32        72.00        55.33        98.27 
TCGA-AO-A12E TCGA-AQ-A1H3 TCGA-AR-A0TQ TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A24H 
       57.30        32.52        73.64        61.28        63.62       160.90 
TCGA-AR-A24K TCGA-AR-A24Z TCGA-AR-A2LK TCGA-AR-A2LL TCGA-AR-A2LM TCGA-AR-A2LR 
       50.89        79.00        54.21        66.15        52.11        20.38 
TCGA-AR-A5QM TCGA-B6-A0RS TCGA-B6-A0WS TCGA-B6-A0WV TCGA-B6-A0WX TCGA-B6-A0WY 
       54.74       100.70        97.48        79.63        21.47       113.79 
TCGA-B6-A1KC TCGA-B6-A1KI TCGA-B6-A401 TCGA-BH-A0AU TCGA-BH-A0AW TCGA-BH-A0B2 
       43.59        73.51        85.35        24.53        20.45        40.83 
TCGA-BH-A0B3 TCGA-BH-A0B6 TCGA-BH-A0BT TCGA-BH-A0BW TCGA-BH-A0DD TCGA-BH-A0DP 
       39.55        56.94        45.57        11.67        45.83        15.65 
TCGA-BH-A0H7 TCGA-BH-A0HQ TCGA-BH-A0HW TCGA-BH-A18N TCGA-BH-A18S TCGA-BH-A1EX 
       23.08        36.85        51.32        37.74        66.05        49.58 
TCGA-BH-A1F2 TCGA-BH-A1FC TCGA-BH-A1FG TCGA-BH-A1FJ TCGA-BH-A1FN TCGA-BH-A204 
       31.53       114.15       122.89        63.35        72.07        83.31 
TCGA-C8-A12W TCGA-C8-A132 TCGA-C8-A135 TCGA-D8-A143 TCGA-D8-A1JB TCGA-D8-A1JC 
       12.66         1.87         1.05        14.17        18.71        15.78 
TCGA-D8-A1JF TCGA-D8-A1JT TCGA-D8-A1XB TCGA-D8-A1XM TCGA-D8-A1XS TCGA-D8-A1XY 
       12.03        13.32        18.15        17.69        16.31        16.54 
TCGA-D8-A1XZ TCGA-D8-A1Y2 TCGA-D8-A27G TCGA-D8-A27N TCGA-D8-A27T TCGA-E2-A107 
       15.32        14.24        13.45         4.80        13.08        34.42 
TCGA-E2-A10C TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14Y TCGA-E2-A15A TCGA-E2-A1LK 
       40.11        44.68        40.96        28.60        23.34         8.75 
TCGA-E2-A574 TCGA-E9-A1N9 TCGA-E9-A1R6 TCGA-E9-A1RE TCGA-E9-A1RH TCGA-E9-A226 
       26.56        13.12         2.76        34.65        34.59        34.13 
TCGA-E9-A54Y TCGA-E9-A5FL TCGA-E9-A5UO TCGA-EW-A1J5 TCGA-EW-A1J6 TCGA-EW-A1OY 
       23.84         0.79        13.81        15.68        28.77        29.85 
TCGA-EW-A1OZ TCGA-EW-A1P3 TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A2FS TCGA-EW-A423 
       40.41        52.96        19.99         6.15        52.73        10.16 
TCGA-GM-A2DC TCGA-GM-A2DK TCGA-HN-A2NL TCGA-LL-A7SZ TCGA-LL-A7T0 TCGA-LL-A9Q3 
       83.34        86.96         2.60        14.70        12.36        14.07 
TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OL-A5RZ TCGA-OL-A66K TCGA-OL-A6VO TCGA-S3-A6ZG 
       27.91        22.39        22.32        41.92        28.21        13.12 
TCGA-S3-A6ZH TCGA-UU-A93S 
       16.93         3.81 

$`AMP PEAK 23(17P11.2) WILD-TYPE`
TCGA-3C-AAAU TCGA-3C-AALI TCGA-3C-AALJ TCGA-3C-AALK TCGA-5L-AAT0 TCGA-5L-AAT1 
      129.14       131.67        42.81        40.14        48.56        48.36 
TCGA-A1-A0SB TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH 
        8.52        14.37        43.43        48.10        14.27        47.24 
TCGA-A1-A0SI TCGA-A1-A0SJ TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SO TCGA-A1-A0SP 
       20.88        13.68        31.79         7.96        28.01        19.20 
TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04P TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04T 
       18.21       104.81        18.02        78.41       121.94        73.84 
TCGA-A2-A04U TCGA-A2-A04V TCGA-A2-A04W TCGA-A2-A04X TCGA-A2-A04Y TCGA-A2-A0CK 
       87.25        63.12       101.98        55.43        36.13       136.73 
TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CQ TCGA-A2-A0CR 
       99.12        24.79       114.81        92.48        88.60       107.93 
TCGA-A2-A0CS TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0CX 
       75.55        75.25         5.19        98.99       107.93        56.81 
TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0D4 TCGA-A2-A0EM 
       67.33        34.55        33.76        61.58        25.22       101.72 
TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0EQ TCGA-A2-A0ER TCGA-A2-A0ES 
      134.40        80.28       107.61        79.76        74.40        72.00 
TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW 
       61.94        24.72        99.19        54.64        27.12        44.88 
TCGA-A2-A0SX TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T4 
       50.43        17.52        17.13         8.38        49.84        20.52 
TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0YD TCGA-A2-A0YE TCGA-A2-A0YF TCGA-A2-A0YH 
       17.46        18.90        25.28        18.21        50.47        21.67 
TCGA-A2-A0YI TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A0YT TCGA-A2-A1FW TCGA-A2-A1FZ 
       49.48        19.33        48.46        23.77        17.36        22.45 
TCGA-A2-A1G0 TCGA-A2-A1G1 TCGA-A2-A1G4 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25A 
       20.25        19.20        19.56        16.47        52.47       107.70 
TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD 
       17.19        18.15       105.34        10.59        20.88        39.65 
TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XY TCGA-A2-A3XZ 
       33.93        83.01        32.75        49.48        34.98        50.37 
TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S1 
       38.37         7.30        24.39        21.30        23.21        26.96 
TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CE TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0CJ 
       21.14        21.90        35.31        34.29        35.47        30.61 
TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A13D TCGA-A7-A13E TCGA-A7-A13G 
       37.45        35.67        33.11        31.73        20.19        23.61 
TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26G TCGA-A7-A26H TCGA-A7-A26I TCGA-A7-A2KD 
       31.36        24.26        23.74        23.80        21.73        22.32 
TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J1 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A426 
       11.34        10.59        11.28        13.41        14.70        11.97 
TCGA-A7-A4SA TCGA-A7-A4SB TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF TCGA-A7-A56D 
       14.93        13.74        14.50        21.17        17.92        14.73 
TCGA-A7-A5ZV TCGA-A7-A5ZW TCGA-A7-A5ZX TCGA-A7-A6VW TCGA-A7-A6VX TCGA-A7-A6VY 
       12.10        10.72        11.05         9.37        10.42         8.75 
TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06R TCGA-A8-A06T TCGA-A8-A06U TCGA-A8-A06X 
       13.02        13.02        17.98        53.06        29.03        31.00 
TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A079 TCGA-A8-A07B 
       26.01         1.02        17.03        53.98         9.01        43.00 
TCGA-A8-A07E TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07L 
       19.99        18.97        18.97        14.01        12.00        32.05 
TCGA-A8-A07O TCGA-A8-A07R TCGA-A8-A07S TCGA-A8-A07U TCGA-A8-A07Z TCGA-A8-A082 
        9.99         8.98         7.99        24.99        45.07        18.05 
TCGA-A8-A084 TCGA-A8-A085 TCGA-A8-A08A TCGA-A8-A08B TCGA-A8-A08C TCGA-A8-A08F 
       15.06        36.95         0.99        38.01        28.96        33.01 
TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08O TCGA-A8-A08P TCGA-A8-A08R 
       12.00        37.05         9.99        31.00        31.00         0.99 
TCGA-A8-A08T TCGA-A8-A08Z TCGA-A8-A091 TCGA-A8-A092 TCGA-A8-A095 TCGA-A8-A097 
      112.08        40.01        33.01        30.97        41.98        12.00 
TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09C TCGA-A8-A09D TCGA-A8-A09I TCGA-A8-A09K 
        9.99         9.99         1.02        50.04        45.07        29.98 
TCGA-A8-A09M TCGA-A8-A09N TCGA-A8-A09Q TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09W 
       33.07         1.02        25.02        19.04        15.02         0.99 
TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A7 TCGA-A8-A0A9 
       12.00        19.04        13.02        21.04         0.99        27.02 
TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23E TCGA-AC-A23H TCGA-AC-A2B8 
       17.03        38.04         0.95         2.37         5.72         1.48 
TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK 
       38.53        99.35        40.57        55.43        36.99        38.79 
TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3HN 
       26.04        50.70         0.92         2.27        32.45        16.31 
TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3TN TCGA-AC-A3W5 TCGA-AC-A3W6 TCGA-AC-A3YI 
       14.83        22.19        14.99        16.57        19.79        23.24 
TCGA-AC-A3YJ TCGA-AC-A5XS TCGA-AC-A62V TCGA-AC-A62X TCGA-AC-A62Y TCGA-AC-A6IV 
       24.79         1.55        11.44        13.71        17.42        18.67 
TCGA-AC-A6IW TCGA-AC-A6IX TCGA-AC-A6NO TCGA-AC-A7VB TCGA-AC-A7VC TCGA-AC-A8OQ 
       13.58        12.26         1.68         8.22         0.03         1.12 
TCGA-AC-A8OR TCGA-AC-A8OS TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A041 TCGA-AN-A046 
        1.32         2.30         0.33         0.33         0.23         0.33 
TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AK 
        0.62         2.96         1.78         1.71         9.96         7.36 
TCGA-AN-A0AL TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FD 
        6.51         0.16         0.33         0.33         0.33         6.44 
TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FN TCGA-AN-A0FS 
        5.65         7.96         7.00         7.59         7.17         6.28 
TCGA-AN-A0FW TCGA-AN-A0FX TCGA-AN-A0FY TCGA-AN-A0FZ TCGA-AN-A0XL TCGA-AN-A0XN 
        0.36         0.33         0.33         0.33         0.33         0.33 
TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS TCGA-AN-A0XU TCGA-AN-A0XV 
       12.33         0.30         0.33         0.33         0.33         5.33 
TCGA-AN-A0XW TCGA-AO-A03M TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03R 
        5.59        61.35        66.77        81.63        95.70        68.75 
TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J4 
       47.87        58.95        29.13        32.78        21.40        52.18 
TCGA-AO-A0J5 TCGA-AO-A0J6 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JB 
       26.04        37.48        22.36        53.03        21.53        50.70 
TCGA-AO-A0JC TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JG TCGA-AO-A0JI TCGA-AO-A0JJ 
       50.86        76.77        21.37        26.24        50.24        62.04 
TCGA-AO-A0JM TCGA-AO-A124 TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 TCGA-AO-A129 
       71.80       102.58        99.25       108.72       106.78       108.03 
TCGA-AO-A12A TCGA-AO-A12D TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO 
       90.58        64.04        48.36        41.62        28.37        14.73 
TCGA-AO-A1KP TCGA-AO-A1KQ TCGA-AO-A1KR TCGA-AO-A1KS TCGA-AO-A1KT TCGA-AQ-A04H 
       82.62        61.87        70.39         0.53        17.79        24.79 
TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A0Y5 TCGA-AQ-A1H2 TCGA-AQ-A54N TCGA-AQ-A54O 
       26.93       130.09         5.65        15.62         2.56        32.91 
TCGA-AQ-A7U7 TCGA-AR-A0TP TCGA-AR-A0TR TCGA-AR-A0TS TCGA-AR-A0TT TCGA-AR-A0TV 
       19.20       111.32         5.26        74.79        86.66        42.35 
TCGA-AR-A0TW TCGA-AR-A0TX TCGA-AR-A0TY TCGA-AR-A0TZ TCGA-AR-A0U0 TCGA-AR-A0U1 
       98.93        64.83        55.86       107.24        65.36       101.95 
TCGA-AR-A0U2 TCGA-AR-A0U3 TCGA-AR-A0U4 TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AJ 
       83.87       114.02        85.97        75.55        61.84        52.77 
TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AM TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AP 
       51.25        48.82        76.11        43.73        43.56        39.98 
TCGA-AR-A1AQ TCGA-AR-A1AR TCGA-AR-A1AS TCGA-AR-A1AU TCGA-AR-A1AX TCGA-AR-A1AY 
       43.07        17.23        37.81        76.21        62.14        33.73 
TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24Q 
       94.22        96.89        78.51        84.20         2.76       104.28 
TCGA-AR-A24R TCGA-AR-A24S TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24V TCGA-AR-A24W 
       87.22        97.84        76.01        53.36        85.35        50.96 
TCGA-AR-A24X TCGA-AR-A250 TCGA-AR-A251 TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A255 
       83.77        89.00        78.48        73.18        72.76        58.92 
TCGA-AR-A256 TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LN TCGA-AR-A2LO 
       93.83       143.21        20.25        62.86        38.17        39.39 
TCGA-AR-A2LQ TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I2 
       40.54        16.04        20.45        10.59        77.62       143.38 
TCGA-B6-A0I5 TCGA-B6-A0I9 TCGA-B6-A0IA TCGA-B6-A0IB TCGA-B6-A0IC TCGA-B6-A0IE 
      149.59        12.13       220.90       129.57        50.70        65.72 
TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN 
      146.50       112.37       176.98        18.77       126.12        84.59 
TCGA-B6-A0IO TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RH 
      110.14       110.93       140.88       211.56        68.45       189.01 
TCGA-B6-A0RI TCGA-B6-A0RL TCGA-B6-A0RM TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RP 
      234.28        81.17        78.02       172.96       162.05       102.77 
TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RU TCGA-B6-A0RV TCGA-B6-A0WT TCGA-B6-A0WW 
      140.48        89.46       131.21       157.41       188.68        18.35 
TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 
      129.57       129.70       186.48        28.27        68.94        58.88 
TCGA-B6-A1KF TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A402 TCGA-B6-A408 TCGA-B6-A40B 
      101.52       139.17       170.17        74.99        68.12       103.63 
TCGA-B6-A40C TCGA-BH-A0AV TCGA-BH-A0AY TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B4 
       71.15        59.84        25.55        28.50        46.95        39.16 
TCGA-BH-A0B5 TCGA-BH-A0B7 TCGA-BH-A0B9 TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BD 
       48.36        56.98        51.68        37.22        32.02        18.21 
TCGA-BH-A0BF TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BM TCGA-BH-A0BO 
       25.71        24.85        21.70        44.05        61.68        35.67 
TCGA-BH-A0BP TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BV TCGA-BH-A0BZ 
       48.69        27.19        53.69        53.95        49.94        49.05 
TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DE TCGA-BH-A0DG 
       41.75        44.02        48.13        42.90        31.17        23.44 
TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DO TCGA-BH-A0DQ 
       38.01        22.13        13.91        48.23        17.26         3.22 
TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E0 
        2.56        38.47        67.86        47.41        16.27         4.41 
TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E6 TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EA 
       15.68        14.30         9.63        44.81        46.19        32.58 
TCGA-BH-A0EB TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H0 
       24.49        31.00        24.43        30.35        10.78        15.16 
TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0HB 
       37.78        35.51        24.56        41.00        52.96        26.50 
TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HU TCGA-BH-A0HX 
       20.38         5.85         2.50        13.61        12.89        27.25 
TCGA-BH-A0HY TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 
       50.79         5.59        23.93        24.95        42.35        44.81 
TCGA-BH-A0WA TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18K 
       23.05         8.81         2.01         7.23        20.12        90.84 
TCGA-BH-A18L TCGA-BH-A18M TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18R TCGA-BH-A18T 
       26.66        72.56        30.28        55.63        37.55         7.36 
TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1EN TCGA-BH-A1EO TCGA-BH-A1ES TCGA-BH-A1ET 
       51.39        51.16        69.93        91.99       113.82        82.85 
TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F5 
       42.28        12.00        55.69        17.69        25.81        89.16 
TCGA-BH-A1F6 TCGA-BH-A1F8 TCGA-BH-A1FB TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FH 
       97.48        24.66       120.62        33.17        74.73        36.92 
TCGA-BH-A1FL TCGA-BH-A1FM TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A201 TCGA-BH-A202 
       55.00        45.63       144.59        72.07        28.14        26.14 
TCGA-BH-A203 TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 
       38.60        57.83       130.16        10.65         6.44        20.12 
TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-BH-A6R8 
       10.52       109.28         8.94        18.64        23.51         9.63 
TCGA-BH-A6R9 TCGA-BH-A8FY TCGA-BH-A8FZ TCGA-BH-A8G0 TCGA-BH-AB28 TCGA-C8-A12L 
        5.26         9.70        18.87        21.76         9.44        11.93 
TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12U 
       11.77        11.77        12.66        11.77        12.66        12.66 
TCGA-C8-A12V TCGA-C8-A12X TCGA-C8-A12Z TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A134 
       12.66        12.66         0.39         3.16         2.24         1.12 
TCGA-C8-A137 TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HI 
        4.11         4.08        12.33        10.92        11.34        11.28 
TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HL TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A26V 
        0.16        12.03        10.42         2.30         3.25         0.30 
TCGA-C8-A26W TCGA-C8-A26X TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A274 
        0.23         0.36         0.43         8.28         9.67         9.53 
TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A3M8 
        0.03         9.50        12.20         0.99         0.03         0.23 
TCGA-C8-A8HP TCGA-C8-A8HQ TCGA-C8-A8HR TCGA-C8-A9FZ TCGA-D8-A13Y TCGA-D8-A13Z 
       13.02        12.49        13.41        19.46        11.90        20.88 
TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A145 TCGA-D8-A146 TCGA-D8-A147 
       13.25        20.58        13.97        13.48        21.14        19.20 
TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JG 
       14.17        17.49        16.50        18.15        18.90        12.03 
TCGA-D8-A1JH TCGA-D8-A1JI TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JM 
       14.01        18.97        20.09        20.12        20.09        19.40 
TCGA-D8-A1JN TCGA-D8-A1JP TCGA-D8-A1JS TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X6 
       20.38        21.01        12.20        14.70        18.58        17.79 
TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XC TCGA-D8-A1XD 
       16.73        25.74        23.90        27.58        12.39        17.16 
TCGA-D8-A1XF TCGA-D8-A1XG TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XL TCGA-D8-A1XO 
       15.22        14.73        21.83        14.50        19.92        15.55 
TCGA-D8-A1XQ TCGA-D8-A1XR TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1XV TCGA-D8-A1XW 
       16.41        15.85         6.35        12.99        15.16        12.66 
TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y3 TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27H 
       15.52         9.93        14.14        17.42        16.04        13.05 
TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27P TCGA-D8-A27R 
       14.43         9.44        16.41        13.48         0.76        10.09 
TCGA-D8-A27V TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-D8-A73U 
       12.53        12.26        33.37        18.51        21.67        16.18 
TCGA-D8-A73W TCGA-D8-A73X TCGA-E2-A105 TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10A 
        8.02        12.10        43.00        27.52        46.59        40.41 
TCGA-E2-A10B TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14Q TCGA-E2-A14R 
       37.51        28.44        28.87        47.15        38.24        38.60 
TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14W TCGA-E2-A14X 
       33.17        33.30        43.33        34.26        32.02        31.96 
TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A153 TCGA-E2-A154 TCGA-E2-A155 
       18.51        25.41        27.12        23.24        19.43        21.04 
TCGA-E2-A156 TCGA-E2-A158 TCGA-E2-A159 TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15E 
       23.87        14.79        25.05        22.82        17.29        20.71 
TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K 
       21.63        18.21        12.92        17.42        19.40         9.04 
TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15O TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A15S 
       20.58        11.05        13.02        19.56        17.06        14.07 
TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 
       14.99        60.53        53.62        53.03        33.01        32.35 
TCGA-E2-A1B6 TCGA-E2-A1BC TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IG 
       28.50        16.47        17.10        38.30        37.41        32.78 
TCGA-E2-A1IH TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN 
       33.73        33.70        28.44        22.65         3.88        22.19 
TCGA-E2-A1IO TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L8 TCGA-E2-A1L9 
       20.98        11.08        54.18        27.42        39.62        19.66 
TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LG TCGA-E2-A1LH TCGA-E2-A1LI 
       24.59        40.47        28.90        18.87       106.75       102.61 
TCGA-E2-A1LL TCGA-E2-A2P5 TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 
       43.04        16.93         5.52        15.72         8.28        30.61 
TCGA-E2-A573 TCGA-E2-A576 TCGA-E2-A9RU TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 
       34.92        34.29        12.85        34.82        32.88        36.82 
TCGA-E9-A1N6 TCGA-E9-A1N8 TCGA-E9-A1NA TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NE 
       13.48        12.00        36.56        39.55        12.59        35.77 
TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 
       35.24        25.84         9.86        11.90        28.27        34.95 
TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R7 TCGA-E9-A1RA TCGA-E9-A1RB 
        2.56         6.12         3.02        21.21        32.09        32.09 
TCGA-E9-A1RC TCGA-E9-A1RD TCGA-E9-A1RF TCGA-E9-A1RG TCGA-E9-A1RI TCGA-E9-A227 
       40.24         1.12         6.58        21.27        35.64        32.05 
TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A22D TCGA-E9-A22E 
       12.53        13.32        39.09        22.75        41.03        12.89 
TCGA-E9-A22G TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A244 TCGA-E9-A247 TCGA-E9-A248 
       23.51        20.71        17.06         0.69        27.22         1.94 
TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A2JT TCGA-E9-A3HO 
        7.13        24.56         0.72        29.72         0.76        26.07 
TCGA-E9-A3Q9 TCGA-E9-A3QA TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A5FK TCGA-E9-A5UP 
       18.41        30.18        15.72        12.33        14.70        14.40 
TCGA-E9-A6HE TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 
       15.39        12.20        39.72         8.48        18.21        18.90 
TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1OV TCGA-EW-A1OW TCGA-EW-A1OX TCGA-EW-A1P0 
       13.25        16.57        25.94        22.82        29.95        41.13 
TCGA-EW-A1P1 TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1P8 
       39.78        29.82        23.11        18.48        30.08         7.86 
TCGA-EW-A1PA TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PF TCGA-EW-A1PG TCGA-EW-A1PH 
       18.90        13.94        10.52        14.43        34.55        19.96 
TCGA-EW-A2FR TCGA-EW-A2FV TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A3U0 TCGA-EW-A424 
       55.00        25.91        22.09        34.03        17.49        23.51 
TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DD 
        7.40       109.87        59.57       216.76        79.10        75.02 
TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A2DI TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN 
       70.85        72.10        85.15       115.69       106.06       101.62 
TCGA-GM-A2DO TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XL TCGA-GM-A3XN 
       85.35       110.50        38.20        43.73        69.30        66.38 
TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2OB TCGA-JL-A3YW TCGA-JL-A3YX 
       72.03        13.55        18.12        62.43        11.84        11.57 
TCGA-LD-A66U TCGA-LD-A74U TCGA-LD-A7W5 TCGA-LD-A7W6 TCGA-LD-A9QF TCGA-LL-A440 
       21.24        13.22         7.10        13.28        10.62        24.95 
TCGA-LL-A441 TCGA-LL-A442 TCGA-LL-A50Y TCGA-LL-A5YL TCGA-LL-A5YM TCGA-LL-A5YN 
       11.44        10.95        25.05        17.06        15.32        14.70 
TCGA-LL-A5YO TCGA-LL-A5YP TCGA-LL-A6FP TCGA-LL-A6FQ TCGA-LL-A6FR TCGA-LL-A73Y 
       14.47        14.79        22.26         2.63        16.08        15.68 
TCGA-LL-A73Z TCGA-LL-A740 TCGA-LL-A8F5 TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5D7 
        7.46        14.50        14.73         2.10        36.30        58.52 
TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RU TCGA-OL-A5RV TCGA-OL-A5RW TCGA-OL-A5RX 
       31.99        58.62        40.08        34.92        36.36        28.87 
TCGA-OL-A5RY TCGA-OL-A5S0 TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66L 
       24.72        20.38        26.70        23.47        65.62        42.77 
TCGA-OL-A66N TCGA-OL-A66O TCGA-OL-A66P TCGA-OL-A6VQ TCGA-OL-A6VR TCGA-OL-A97C 
       26.04        17.36        14.07        19.73        40.11         8.91 
TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE TCGA-PL-A8LX TCGA-PL-A8LY TCGA-PL-A8LZ 
       47.01        64.21        86.96         0.16         0.26         9.93 
TCGA-S3-A6ZF TCGA-S3-AA0Z TCGA-S3-AA10 TCGA-S3-AA11 TCGA-S3-AA12 TCGA-S3-AA14 
       16.50        16.80        15.39        13.84        15.35        14.96 
TCGA-S3-AA15 TCGA-S3-AA17 TCGA-UL-AAZ6 TCGA-W8-A86G TCGA-WT-AB41 TCGA-WT-AB44 
       13.84        13.94        17.03        11.41        52.96        29.03 
TCGA-XX-A899 TCGA-XX-A89A TCGA-Z7-A8R5 TCGA-Z7-A8R6 
       15.35        16.04       108.07       107.05 

  AMP PEAK 23(17P11.2) MUTATED AMP PEAK 23(17P11.2) WILD-TYPE 
                          0.33                           0.03 
  AMP PEAK 23(17P11.2) MUTATED AMP PEAK 23(17P11.2) WILD-TYPE 
                        160.90                         234.28 
  AMP PEAK 23(17P11.2) MUTATED AMP PEAK 23(17P11.2) WILD-TYPE 
                        28.685                         23.915 
[1] "0.3 - 160.9 (28.7)" "0.0 - 234.3 (23.9)"
[1] "hr=" "1.4"
D23V2, continuous
                                vv
clus                             STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  AMP PEAK 23(17P11.2) MUTATED        10        8        0        1        49
  AMP PEAK 23(17P11.2) WILD-TYPE      79       73        8        2       304
                                vv
clus                             STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  AMP PEAK 23(17P11.2) MUTATED          33         1         27          4
  AMP PEAK 23(17P11.2) WILD-TYPE       212         1        123         25
                                vv
clus                             STAGE IIIC STAGE IV STAGE TIS STAGE X
  AMP PEAK 23(17P11.2) MUTATED           11        2         0       1
  AMP PEAK 23(17P11.2) WILD-TYPE         52       18         1      12
D23V3, multiclass
            clus
vv           AMP PEAK 23(17P11.2) MUTATED AMP PEAK 23(17P11.2) WILD-TYPE
  STAGE I                              10                             79
  STAGE IA                              8                             73
  STAGE IB                              0                              8
  STAGE II                              1                              2
  STAGE IIA                            49                            304
  STAGE IIB                            33                            212
  STAGE III                             1                              1
  STAGE IIIA                           27                            123
  STAGE IIIB                            4                             25
  STAGE IIIC                           11                             52
  STAGE IV                              2                             18
  STAGE TIS                             0                              1
  STAGE X                               1                             12
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              T1  T2  T3  T4
  AMP PEAK 23(17P11.2) MUTATED    32  82  26   7
  AMP PEAK 23(17P11.2) WILD-TYPE 240 534 104  33
D23V4, multiclass
    clus
vv   AMP PEAK 23(17P11.2) MUTATED AMP PEAK 23(17P11.2) WILD-TYPE
  T1                           32                            240
  T2                           82                            534
  T3                           26                            104
  T4                            7                             33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              N0  N1  N2  N3
  AMP PEAK 23(17P11.2) MUTATED    62  51  18  12
  AMP PEAK 23(17P11.2) WILD-TYPE 439 299  99  63
D23V5, multiclass
    clus
vv   AMP PEAK 23(17P11.2) MUTATED AMP PEAK 23(17P11.2) WILD-TYPE
  N0                           62                            439
  N1                           51                            299
  N2                           18                             99
  N3                           12                             63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D23V6, binary
                                cls
clus                               0   1
  AMP PEAK 23(17P11.2) MUTATED   121   2
  AMP PEAK 23(17P11.2) WILD-TYPE 758  19
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 23(17P11.2) MUTATED    121    2
  AMP PEAK 23(17P11.2) WILD-TYPE  758   19
   clus
vv  AMP PEAK 23(17P11.2) MUTATED AMP PEAK 23(17P11.2) WILD-TYPE
  0                          121                            758
  1                            2                             19
[1] 2 2
[1] FALSE
D23V7, binary
                                cls
clus                               0   1
  AMP PEAK 23(17P11.2) MUTATED   144   3
  AMP PEAK 23(17P11.2) WILD-TYPE 907   8
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 23(17P11.2) MUTATED    144    3
  AMP PEAK 23(17P11.2) WILD-TYPE  907    8
        clus
vv       AMP PEAK 23(17P11.2) MUTATED AMP PEAK 23(17P11.2) WILD-TYPE
  FEMALE                          144                            907
  MALE                              3                              8
[1] 2 2
[1] FALSE
                                vv
clus                             INFILTRATING CARCINOMA NOS
  AMP PEAK 23(17P11.2) MUTATED                            0
  AMP PEAK 23(17P11.2) WILD-TYPE                          1
                                vv
clus                             INFILTRATING DUCTAL CARCINOMA
  AMP PEAK 23(17P11.2) MUTATED                             109
  AMP PEAK 23(17P11.2) WILD-TYPE                           654
                                vv
clus                             INFILTRATING LOBULAR CARCINOMA
  AMP PEAK 23(17P11.2) MUTATED                               23
  AMP PEAK 23(17P11.2) WILD-TYPE                            169
                                vv
clus                             MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  AMP PEAK 23(17P11.2) MUTATED                     1                     1
  AMP PEAK 23(17P11.2) WILD-TYPE                   5                     3
                                vv
clus                             MIXED HISTOLOGY (PLEASE SPECIFY)
  AMP PEAK 23(17P11.2) MUTATED                                  2
  AMP PEAK 23(17P11.2) WILD-TYPE                               28
                                vv
clus                             MUCINOUS CARCINOMA OTHER  SPECIFY
  AMP PEAK 23(17P11.2) MUTATED                    3              8
  AMP PEAK 23(17P11.2) WILD-TYPE                 14             40
D23V8, multiclass
                                  clus
vv                                 AMP PEAK 23(17P11.2) MUTATED
  INFILTRATING CARCINOMA NOS                                  0
  INFILTRATING DUCTAL CARCINOMA                             109
  INFILTRATING LOBULAR CARCINOMA                             23
  MEDULLARY CARCINOMA                                         1
  METAPLASTIC CARCINOMA                                       1
  MIXED HISTOLOGY (PLEASE SPECIFY)                            2
  MUCINOUS CARCINOMA                                          3
  OTHER  SPECIFY                                              8
                                  clus
vv                                 AMP PEAK 23(17P11.2) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                    1
  INFILTRATING DUCTAL CARCINOMA                               654
  INFILTRATING LOBULAR CARCINOMA                              169
  MEDULLARY CARCINOMA                                           5
  METAPLASTIC CARCINOMA                                         3
  MIXED HISTOLOGY (PLEASE SPECIFY)                             28
  MUCINOUS CARCINOMA                                           14
  OTHER  SPECIFY                                               40
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D23V9, binary
                                cls
clus                               0   1
  AMP PEAK 23(17P11.2) MUTATED    50  97
  AMP PEAK 23(17P11.2) WILD-TYPE 238 677
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 23(17P11.2) MUTATED     50   97
  AMP PEAK 23(17P11.2) WILD-TYPE  238  677
     clus
vv    AMP PEAK 23(17P11.2) MUTATED AMP PEAK 23(17P11.2) WILD-TYPE
  NO                            50                            238
  YES                           97                            677
[1] 2 2
[1] FALSE
D23V10, continuous
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK 23(17P11.2) MUTATED                                  0     5
  AMP PEAK 23(17P11.2) WILD-TYPE                                1    55
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 23(17P11.2) MUTATED                          24   104
  AMP PEAK 23(17P11.2) WILD-TYPE                       146   632
D23V11, multiclass
                                  clus
vv                                 AMP PEAK 23(17P11.2) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            0
  ASIAN                                                       5
  BLACK OR AFRICAN AMERICAN                                  24
  WHITE                                                     104
                                  clus
vv                                 AMP PEAK 23(17P11.2) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              1
  ASIAN                                                        55
  BLACK OR AFRICAN AMERICAN                                   146
  WHITE                                                       632
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D23V12, binary
                                cls
clus                               0   1
  AMP PEAK 23(17P11.2) MUTATED     5 117
  AMP PEAK 23(17P11.2) WILD-TYPE  33 741
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 23(17P11.2) MUTATED      5  117
  AMP PEAK 23(17P11.2) WILD-TYPE   33  741
                        clus
vv                       AMP PEAK 23(17P11.2) MUTATED
  HISPANIC OR LATINO                                5
  NOT HISPANIC OR LATINO                          117
                        clus
vv                       AMP PEAK 23(17P11.2) WILD-TYPE
  HISPANIC OR LATINO                                 33
  NOT HISPANIC OR LATINO                            741
[1] 2 2
[1] FALSE

Clustering(24) Variable = AMP PEAK 24(17Q12) MUTATION ANALYSIS
D24V1, survival
                              sevent
clus2                            0   1
  AMP PEAK 24(17Q12) MUTATED   280  44
  AMP PEAK 24(17Q12) WILD-TYPE 636  84
  AMP PEAK 24(17Q12) MUTATED AMP PEAK 24(17Q12) WILD-TYPE 
                         324                          720 
  AMP PEAK 24(17Q12) MUTATED AMP PEAK 24(17Q12) WILD-TYPE 
                          44                           84 
$`AMP PEAK 24(17Q12) MUTATED`
TCGA-3C-AALI TCGA-3C-AALJ TCGA-3C-AALK TCGA-4H-AAAK TCGA-5T-A9QA TCGA-A1-A0SH 
      131.67        42.81        40.14        11.44         9.96        47.24 
TCGA-A1-A0SJ TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SO TCGA-A2-A04W TCGA-A2-A04X 
       13.68         7.96        39.32        28.01       101.98        55.43 
TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CX TCGA-A2-A0D1 TCGA-A2-A0D4 TCGA-A2-A0ET 
       75.25         5.19        56.81        34.55        25.22        35.05 
TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EY TCGA-A2-A0SY TCGA-A2-A0T1 TCGA-A2-A0T3 
       34.29        31.82        63.29        44.28        17.13        49.84 
TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YE TCGA-A2-A0YG TCGA-A2-A0YJ TCGA-A2-A0YM 
       20.75        32.55        18.21        21.90        18.61        31.73 
TCGA-A2-A1FX TCGA-A2-A1G0 TCGA-A2-A1G1 TCGA-A2-A25E TCGA-A2-A3XU TCGA-A2-A3XV 
       60.72        20.25        19.20       105.34        29.98        32.75 
TCGA-A2-A3XX TCGA-A2-A3XZ TCGA-A7-A0CD TCGA-A7-A0DC TCGA-A7-A13D TCGA-A7-A13F 
       47.31        50.37        38.30        29.79        31.73        25.15 
TCGA-A7-A26H TCGA-A7-A26J TCGA-A7-A2KD TCGA-A7-A3J0 TCGA-A7-A4SA TCGA-A7-A4SB 
       23.80        20.61        22.32        10.29        14.93        13.74 
TCGA-A7-A4SF TCGA-A8-A06O TCGA-A8-A06U TCGA-A8-A06Z TCGA-A8-A076 TCGA-A8-A07B 
       17.92        13.02        29.03         1.02        53.98        43.00 
TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07O TCGA-A8-A07P TCGA-A8-A07R TCGA-A8-A07W 
       18.97        14.01         9.99        10.98         8.98         9.99 
TCGA-A8-A086 TCGA-A8-A08B TCGA-A8-A08F TCGA-A8-A08G TCGA-A8-A08J TCGA-A8-A08P 
       13.02        38.01        33.01        19.96        37.05        31.00 
TCGA-A8-A08R TCGA-A8-A08S TCGA-A8-A08X TCGA-A8-A092 TCGA-A8-A093 TCGA-A8-A097 
        0.99        33.01        43.00        30.97        17.95        12.00 
TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09M TCGA-A8-A09R 
        9.99        12.00        49.05        45.07        33.07         8.98 
TCGA-A8-A0A6 TCGA-A8-A0A7 TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23G 
       21.04         0.99        17.03        38.04         0.95        10.85 
TCGA-AC-A23H TCGA-AC-A2FB TCGA-AC-A2FM TCGA-AC-A2QJ TCGA-AC-A3W5 TCGA-AC-A7VB 
        5.72        40.57        26.04         2.27        16.57         8.22 
TCGA-AC-A8OQ TCGA-AN-A041 TCGA-AN-A049 TCGA-AN-A04C TCGA-AN-A0FT TCGA-AN-A0FV 
        1.12         0.23         0.62         1.78         7.04         0.33 
TCGA-AN-A0FZ TCGA-AN-A0XL TCGA-AN-A0XU TCGA-AO-A03L TCGA-AO-A03P TCGA-AO-A0J7 
        0.33         0.33         0.33        80.28        95.70        20.32 
TCGA-AO-A0JE TCGA-AO-A0JL TCGA-AO-A0JM TCGA-AO-A124 TCGA-AO-A12B TCGA-AO-A12D 
       76.77        55.33        71.80       102.58        98.27        64.04 
TCGA-AO-A12E TCGA-AO-A1KQ TCGA-AO-A1KS TCGA-AQ-A04H TCGA-AQ-A0Y5 TCGA-AQ-A1H3 
       57.30        61.87         0.53        24.79         5.65        32.52 
TCGA-AR-A0TQ TCGA-AR-A0TX TCGA-AR-A0U2 TCGA-AR-A1AK TCGA-AR-A1AV TCGA-AR-A1AW 
       73.64        64.83        83.87        51.25        61.28        63.62 
TCGA-AR-A1AX TCGA-AR-A24H TCGA-AR-A24K TCGA-AR-A24L TCGA-AR-A24P TCGA-AR-A24U 
       62.14       160.90        50.89        94.22         2.76        53.36 
TCGA-AR-A24V TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A254 TCGA-AR-A255 TCGA-AR-A2LJ 
       85.35        79.00        89.00        72.76        58.92        62.86 
TCGA-AR-A2LK TCGA-AR-A2LL TCGA-B6-A0I1 TCGA-B6-A0I9 TCGA-B6-A0IG TCGA-B6-A0IN 
       54.21        66.15        77.62        12.13       146.50        84.59 
TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RS TCGA-B6-A0WY TCGA-B6-A0X1 TCGA-B6-A1KC 
       68.45       189.01       100.70       113.79       186.48        43.59 
TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A1KN TCGA-B6-A401 TCGA-B6-A402 TCGA-BH-A0AU 
      101.52        73.51       139.17        85.35        74.99        24.53 
TCGA-BH-A0AW TCGA-BH-A0AZ TCGA-BH-A0B4 TCGA-BH-A0B7 TCGA-BH-A0BT TCGA-BH-A0BW 
       20.45        28.50        39.16        56.98        45.57        11.67 
TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DP 
       49.05        41.75        42.90        45.83        31.17        15.65 
TCGA-BH-A0DZ TCGA-BH-A0EE TCGA-BH-A0H7 TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW 
       16.27        31.00        23.08        36.85        12.89        51.32 
TCGA-BH-A0HY TCGA-BH-A18L TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18R TCGA-BH-A18S 
       50.79        26.66        37.74        30.28        37.55        66.05 
TCGA-BH-A18U TCGA-BH-A1EN TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1EX TCGA-BH-A1F0 
       51.39        69.93        12.00        55.69        49.58        25.81 
TCGA-BH-A1F2 TCGA-BH-A1FC TCGA-BH-A1FG TCGA-BH-A1FJ TCGA-BH-A1FN TCGA-BH-A1FU 
       31.53       114.15       122.89        63.35        72.07        72.07 
TCGA-BH-A202 TCGA-BH-A204 TCGA-BH-A42T TCGA-C8-A12L TCGA-C8-A12M TCGA-C8-A12O 
       26.14        83.31        10.52        11.93        11.77        12.66 
TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12W TCGA-C8-A12Z TCGA-C8-A130 TCGA-C8-A132 
       11.77        12.66        12.66         0.39         3.16         1.87 
TCGA-C8-A135 TCGA-C8-A137 TCGA-C8-A138 TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HK 
        1.05         4.11         4.08        10.92        11.34        12.03 
TCGA-C8-A1HL TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A26W TCGA-C8-A26X TCGA-C8-A26Z 
       10.42         2.30         3.25         0.23         0.36         8.28 
TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A3M8 TCGA-C8-A8HP TCGA-C8-A9FZ 
        0.03         9.50        12.20         0.23        13.02        19.46 
TCGA-D8-A140 TCGA-D8-A143 TCGA-D8-A147 TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JB 
       13.25        14.17        19.20        17.49        16.50        18.71 
TCGA-D8-A1JC TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JT TCGA-D8-A1X5 TCGA-D8-A1X9 
       15.78        12.03        12.03        13.32        18.58        23.90 
TCGA-D8-A1XB TCGA-D8-A1XF TCGA-D8-A1XJ TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XS 
       18.15        15.22        21.83        19.92        17.69        16.31 
TCGA-D8-A1XT TCGA-D8-A1XY TCGA-D8-A1Y2 TCGA-D8-A27G TCGA-D8-A27N TCGA-D8-A27R 
        6.35        16.54        14.24        13.45         4.80        10.09 
TCGA-D8-A27T TCGA-D8-A27W TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A109 TCGA-E2-A10C 
       13.08        12.26        43.00        34.42        46.59        40.11 
TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14T TCGA-E2-A14V TCGA-E2-A14W TCGA-E2-A14Y 
       44.68        40.96        33.30        34.26        32.02        28.60 
TCGA-E2-A152 TCGA-E2-A153 TCGA-E2-A15A TCGA-E2-A15E TCGA-E2-A15H TCGA-E2-A15T 
       27.12        23.24        23.34        20.71        12.92        14.99 
TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1IG TCGA-E2-A1IH TCGA-E2-A1IJ TCGA-E2-A1LA 
       53.62        53.03        32.78        33.73        28.44        24.59 
TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LK TCGA-E2-A56Z TCGA-E2-A574 TCGA-E9-A1N6 
       40.47        28.90         8.75         8.28        26.56        13.48 
TCGA-E9-A1QZ TCGA-E9-A1R2 TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1R7 
       11.90        34.95         6.12         3.02         2.76        21.21 
TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RH TCGA-E9-A1RI TCGA-E9-A228 TCGA-E9-A22B 
       34.65         6.58        34.59        35.64        12.53        22.75 
TCGA-E9-A22D TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A54Y TCGA-E9-A5FL TCGA-E9-A5UO 
       41.03         0.72        29.72        23.84         0.79        13.81 
TCGA-E9-A5UP TCGA-EW-A1IW TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J5 TCGA-EW-A1J6 
       14.40        12.20        13.25        16.57        15.68        28.77 
TCGA-EW-A1OY TCGA-EW-A1OZ TCGA-EW-A1P3 TCGA-EW-A1P5 TCGA-EW-A1PC TCGA-EW-A1PD 
       29.85        40.41        52.96        23.11         6.15        13.94 
TCGA-EW-A1PH TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A423 TCGA-GM-A2DA TCGA-GM-A2DC 
       19.96        55.00        52.73        10.16       216.76        83.34 
TCGA-GM-A2DK TCGA-JL-A3YW TCGA-LD-A9QF TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A7T0 
       86.96        11.84        10.62        15.32        14.70        12.36 
TCGA-MS-A51U TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66K TCGA-OL-A6VO 
       22.39        24.72        22.32        20.38        41.92        28.21 
TCGA-S3-A6ZG TCGA-S3-A6ZH TCGA-S3-AA10 TCGA-S3-AA14 TCGA-UL-AAZ6 TCGA-UU-A93S 
       13.12        16.93        15.39        14.96        17.03         3.81 

$`AMP PEAK 24(17Q12) WILD-TYPE`
TCGA-3C-AAAU TCGA-5L-AAT0 TCGA-5L-AAT1 TCGA-A1-A0SB TCGA-A1-A0SD TCGA-A1-A0SE 
      129.14        48.56        48.36         8.52        14.37        43.43 
TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SI TCGA-A1-A0SK TCGA-A1-A0SP TCGA-A1-A0SQ 
       48.10        14.27        20.88        31.79        19.20        18.21 
TCGA-A2-A04N TCGA-A2-A04P TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04U 
      104.81        18.02        78.41       121.94        73.84        87.25 
TCGA-A2-A04V TCGA-A2-A04Y TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO 
       63.12        36.13       136.73        99.12        24.79       114.81 
TCGA-A2-A0CP TCGA-A2-A0CQ TCGA-A2-A0CR TCGA-A2-A0CS TCGA-A2-A0CV TCGA-A2-A0CW 
       92.48        88.60       107.93        75.55        98.99       107.93 
TCGA-A2-A0D0 TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO 
       67.33        33.76        61.58       101.72       134.40        80.28 
TCGA-A2-A0EP TCGA-A2-A0EQ TCGA-A2-A0ER TCGA-A2-A0ES TCGA-A2-A0EW TCGA-A2-A0EX 
      107.61        79.76        74.40        72.00        61.94        24.72 
TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0SX TCGA-A2-A0T0 
       99.19        54.64        27.12        44.88        50.43        17.52 
TCGA-A2-A0T2 TCGA-A2-A0T4 TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0YD TCGA-A2-A0YF 
        8.38        20.52        17.46        18.90        25.28        50.47 
TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A0YT TCGA-A2-A1FV 
       21.67        49.48        19.33        48.46        23.77        23.47 
TCGA-A2-A1FW TCGA-A2-A1FZ TCGA-A2-A1G4 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25A 
       17.36        22.45        19.56        16.47        52.47       107.70 
TCGA-A2-A25B TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD 
       42.44        17.19        18.15        10.59        20.88        39.65 
TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XW TCGA-A2-A3XY TCGA-A2-A3Y0 TCGA-A2-A4RW 
       33.93        83.01        49.48        34.98        38.37         7.30 
TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A2-A4S3 
       24.39        21.30        23.21        26.96        21.14        21.90 
TCGA-A7-A0CE TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0CJ TCGA-A7-A0D9 TCGA-A7-A0DA 
       35.31        34.29        35.47        30.61        37.45        35.67 
TCGA-A7-A0DB TCGA-A7-A13E TCGA-A7-A13G TCGA-A7-A13H TCGA-A7-A26E TCGA-A7-A26F 
       33.11        20.19        23.61        29.56        31.36        24.26 
TCGA-A7-A26G TCGA-A7-A26I TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J1 TCGA-A7-A3RF 
       23.74        21.73        11.34        10.59        11.28        13.41 
TCGA-A7-A425 TCGA-A7-A426 TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A56D TCGA-A7-A5ZV 
       14.70        11.97        14.50        21.17        14.73        12.10 
TCGA-A7-A5ZW TCGA-A7-A5ZX TCGA-A7-A6VV TCGA-A7-A6VW TCGA-A7-A6VX TCGA-A7-A6VY 
       10.72        11.05        10.29         9.37        10.42         8.75 
TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06R TCGA-A8-A06T TCGA-A8-A06X TCGA-A8-A06Y 
       13.02         1.02        17.98        53.06        31.00        26.01 
TCGA-A8-A075 TCGA-A8-A079 TCGA-A8-A07E TCGA-A8-A07F TCGA-A8-A07J TCGA-A8-A07L 
       17.03         9.01        19.99        18.97        12.00        32.05 
TCGA-A8-A07S TCGA-A8-A07U TCGA-A8-A07Z TCGA-A8-A082 TCGA-A8-A084 TCGA-A8-A085 
        7.99        24.99        45.07        18.05        15.06        36.95 
TCGA-A8-A08A TCGA-A8-A08C TCGA-A8-A08I TCGA-A8-A08L TCGA-A8-A08O TCGA-A8-A08T 
        0.99        28.96        12.00         9.99        31.00       112.08 
TCGA-A8-A08Z TCGA-A8-A091 TCGA-A8-A095 TCGA-A8-A099 TCGA-A8-A09C TCGA-A8-A09D 
       40.01        33.01        41.98         9.99         1.02        50.04 
TCGA-A8-A09K TCGA-A8-A09N TCGA-A8-A09Q TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09W 
       29.98         1.02        25.02        19.04        15.02         0.99 
TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A9 TCGA-AC-A23E 
       14.01        12.00        19.04        13.02        27.02         2.37 
TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK 
        1.48        38.53        99.35        55.43        36.99        38.79 
TCGA-AC-A2FO TCGA-AC-A2QH TCGA-AC-A2QI TCGA-AC-A3BB TCGA-AC-A3HN TCGA-AC-A3OD 
       50.70        33.04         0.92        32.45        16.31        14.83 
TCGA-AC-A3QP TCGA-AC-A3TN TCGA-AC-A3W6 TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A5XS 
       22.19        14.99        19.79        23.24        24.79         1.55 
TCGA-AC-A62V TCGA-AC-A62X TCGA-AC-A62Y TCGA-AC-A6IV TCGA-AC-A6IW TCGA-AC-A6IX 
       11.44        13.71        17.42        18.67        13.58        12.26 
TCGA-AC-A6NO TCGA-AC-A7VC TCGA-AC-A8OP TCGA-AC-A8OR TCGA-AC-A8OS TCGA-AN-A03X 
        1.68         0.03        20.19         1.32         2.30         0.33 
TCGA-AN-A03Y TCGA-AN-A046 TCGA-AN-A04A TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AK 
        0.33         0.33         2.96         1.71         9.96         7.36 
TCGA-AN-A0AL TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FD 
        6.51         0.16         0.33         0.33         0.33         6.44 
TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FN TCGA-AN-A0FS 
        5.65         7.96         7.00         7.59         7.17         6.28 
TCGA-AN-A0FW TCGA-AN-A0FX TCGA-AN-A0FY TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XP 
        0.36         0.33         0.33         0.33        12.33         0.30 
TCGA-AN-A0XR TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03M 
        0.33         0.33         0.33         5.33         5.59        61.35 
TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V 
       66.77        81.63        68.75        47.87        58.95        29.13 
TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J4 TCGA-AO-A0J5 TCGA-AO-A0J6 TCGA-AO-A0J8 
       32.78        21.40        52.18        26.04        37.48        22.36 
TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JC TCGA-AO-A0JD TCGA-AO-A0JF 
       53.03        21.53        50.70        50.86        72.00        21.37 
TCGA-AO-A0JG TCGA-AO-A0JI TCGA-AO-A0JJ TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 
       26.24        50.24        62.04        99.25       108.72       106.78 
TCGA-AO-A129 TCGA-AO-A12A TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO 
      108.03        90.58        48.36        41.62        28.37        14.73 
TCGA-AO-A1KP TCGA-AO-A1KR TCGA-AO-A1KT TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A1H2 
       82.62        70.39        17.79        26.93       130.09        15.62 
TCGA-AQ-A54N TCGA-AQ-A54O TCGA-AQ-A7U7 TCGA-AR-A0TP TCGA-AR-A0TR TCGA-AR-A0TS 
        2.56        32.91        19.20       111.32         5.26        74.79 
TCGA-AR-A0TT TCGA-AR-A0TV TCGA-AR-A0TW TCGA-AR-A0TY TCGA-AR-A0TZ TCGA-AR-A0U0 
       86.66        42.35        98.93        55.86       107.24        65.36 
TCGA-AR-A0U1 TCGA-AR-A0U3 TCGA-AR-A0U4 TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AJ 
      101.95       114.02        85.97        75.55        61.84        52.77 
TCGA-AR-A1AL TCGA-AR-A1AM TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AQ 
       48.82        76.11        43.73        43.56        39.98        43.07 
TCGA-AR-A1AR TCGA-AR-A1AS TCGA-AR-A1AU TCGA-AR-A1AY TCGA-AR-A24M TCGA-AR-A24N 
       17.23        37.81        76.21        33.73        96.89        78.51 
TCGA-AR-A24O TCGA-AR-A24Q TCGA-AR-A24R TCGA-AR-A24S TCGA-AR-A24T TCGA-AR-A24W 
       84.20       104.28        87.22        97.84        76.01        50.96 
TCGA-AR-A24X TCGA-AR-A251 TCGA-AR-A252 TCGA-AR-A256 TCGA-AR-A2LE TCGA-AR-A2LH 
       83.77        78.48        73.18        93.83       143.21        20.25 
TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A2LR TCGA-AR-A5QM 
       52.11        38.17        39.39        40.54        20.38        54.74 
TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0IA 
       16.04        20.45        10.59       143.38       149.59       220.90 
TCGA-B6-A0IB TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IK 
      129.57        50.70        65.72       112.37       176.98        18.77 
TCGA-B6-A0IM TCGA-B6-A0IO TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RI 
      126.12       110.14       110.93       140.88       211.56       234.28 
TCGA-B6-A0RL TCGA-B6-A0RM TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RP TCGA-B6-A0RQ 
       81.17        78.02       172.96       162.05       102.77       140.48 
TCGA-B6-A0RT TCGA-B6-A0RU TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WV 
       89.46       131.21       157.41        97.48       188.68        79.63 
TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X4 TCGA-B6-A0X5 
       18.35        21.47       129.57       129.70        28.27        68.94 
TCGA-B6-A0X7 TCGA-B6-A2IU TCGA-B6-A408 TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AV 
       58.88       170.17        68.12       103.63        71.15        59.84 
TCGA-BH-A0AY TCGA-BH-A0B0 TCGA-BH-A0B2 TCGA-BH-A0B3 TCGA-BH-A0B5 TCGA-BH-A0B6 
       25.55        46.95        40.83        39.55        48.36        56.94 
TCGA-BH-A0B9 TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BF TCGA-BH-A0BG 
       51.68        37.22        32.02        18.21        25.71        24.85 
TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BP TCGA-BH-A0BQ 
       21.70        44.05        61.68        35.67        48.69        27.19 
TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BV TCGA-BH-A0C1 TCGA-BH-A0C3 TCGA-BH-A0DG 
       53.69        53.95        49.94        44.02        48.13        23.44 
TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DO TCGA-BH-A0DQ 
       38.01        22.13        13.91        48.23        17.26         3.22 
TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0E0 TCGA-BH-A0E1 
        2.56        38.47        67.86        47.41         4.41        15.68 
TCGA-BH-A0E2 TCGA-BH-A0E6 TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EA TCGA-BH-A0EB 
       14.30         9.63        44.81        46.19        32.58        24.49 
TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 
       24.43        30.35        10.78        15.16        37.78        35.51 
TCGA-BH-A0H6 TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HI TCGA-BH-A0HK 
       24.56        41.00        52.96        26.50        20.38         5.85 
TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HX TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 
        2.50        13.61        27.25         5.59        23.93        24.95 
TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A0WA TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18I 
       42.35        44.81        23.05         8.81         2.01         7.23 
TCGA-BH-A18J TCGA-BH-A18K TCGA-BH-A18M TCGA-BH-A18Q TCGA-BH-A18T TCGA-BH-A18V 
       20.12        90.84        72.56        55.63         7.36        51.16 
TCGA-BH-A1EO TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EY TCGA-BH-A1F5 
       91.99       113.82        82.85        42.28        17.69        89.16 
TCGA-BH-A1F6 TCGA-BH-A1F8 TCGA-BH-A1FB TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FH 
       97.48        24.66       120.62        33.17        74.73        36.92 
TCGA-BH-A1FL TCGA-BH-A1FM TCGA-BH-A1FR TCGA-BH-A201 TCGA-BH-A203 TCGA-BH-A208 
       55.00        45.63       144.59        28.14        38.60        57.83 
TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42U TCGA-BH-A42V 
      130.16        10.65         6.44        20.12       109.28         8.94 
TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-BH-A6R8 TCGA-BH-A6R9 TCGA-BH-A8FY TCGA-BH-A8FZ 
       18.64        23.51         9.63         5.26         9.70        18.87 
TCGA-BH-A8G0 TCGA-BH-AB28 TCGA-C8-A12N TCGA-C8-A12U TCGA-C8-A12V TCGA-C8-A12X 
       21.76         9.44        11.77        12.66        12.66        12.66 
TCGA-C8-A131 TCGA-C8-A134 TCGA-C8-A1HE TCGA-C8-A1HI TCGA-C8-A1HJ TCGA-C8-A26V 
        2.24         1.12        12.33        11.28         0.16         0.30 
TCGA-C8-A26Y TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A8HQ 
        0.43         9.67         9.53         0.99         0.03        12.49 
TCGA-C8-A8HR TCGA-D8-A13Y TCGA-D8-A13Z TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A145 
       13.41        11.90        20.88        20.58        13.97        13.48 
TCGA-D8-A146 TCGA-D8-A1J8 TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JH TCGA-D8-A1JI 
       21.14        14.17        18.15        18.90        14.01        18.97 
TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1JP 
       20.09        20.12        20.09        19.40        20.38        21.01 
TCGA-D8-A1JS TCGA-D8-A1JU TCGA-D8-A1X6 TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1XA 
       12.20        14.70        17.79        16.73        25.74        27.58 
TCGA-D8-A1XC TCGA-D8-A1XD TCGA-D8-A1XG TCGA-D8-A1XK TCGA-D8-A1XO TCGA-D8-A1XQ 
       12.39        17.16        14.73        14.50        15.55        16.41 
TCGA-D8-A1XR TCGA-D8-A1XU TCGA-D8-A1XV TCGA-D8-A1XW TCGA-D8-A1XZ TCGA-D8-A1Y0 
       15.85        12.99        15.16        12.66        15.32        15.52 
TCGA-D8-A1Y1 TCGA-D8-A1Y3 TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27H TCGA-D8-A27I 
        9.93        14.14        17.42        16.04        13.05        14.43 
TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27P TCGA-D8-A27V TCGA-D8-A3Z5 
        9.44        16.41        13.48         0.76        12.53        33.37 
TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-D8-A73U TCGA-D8-A73W TCGA-D8-A73X TCGA-E2-A108 
       18.51        21.67        16.18         8.02        12.10        27.52 
TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14Q 
       40.41        37.51        28.44        28.87        47.15        38.24 
TCGA-E2-A14R TCGA-E2-A14S TCGA-E2-A14U TCGA-E2-A14X TCGA-E2-A14Z TCGA-E2-A150 
       38.60        33.17        43.33        31.96        18.51        25.41 
TCGA-E2-A154 TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A158 TCGA-E2-A159 TCGA-E2-A15C 
       19.43        21.04        23.87        14.79        25.05        22.82 
TCGA-E2-A15D TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K 
       17.29        21.63        18.21        17.42        19.40         9.04 
TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15O TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A15S 
       20.58        11.05        13.02        19.56        17.06        14.07 
TCGA-E2-A1AZ TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BC TCGA-E2-A1BD 
       60.53        33.01        32.35        28.50        16.47        17.10 
TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1II TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN 
       38.30        37.41        33.70        22.65         3.88        22.19 
TCGA-E2-A1IO TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L8 TCGA-E2-A1L9 
       20.98        11.08        54.18        27.42        39.62        19.66 
TCGA-E2-A1LG TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LL TCGA-E2-A2P5 TCGA-E2-A2P6 
       18.87       106.75       102.61        43.04        16.93         5.52 
TCGA-E2-A3DX TCGA-E2-A570 TCGA-E2-A573 TCGA-E2-A576 TCGA-E2-A9RU TCGA-E9-A1N3 
       15.72        30.61        34.92        34.29        12.85        34.82 
TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N8 TCGA-E9-A1N9 TCGA-E9-A1NA TCGA-E9-A1NC 
       32.88        36.82        12.00        13.12        36.56        39.55 
TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1NI TCGA-E9-A1R0 
       12.59        35.77        35.24        25.84         9.86        28.27 
TCGA-E9-A1R3 TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RD TCGA-E9-A1RG 
        2.56        32.09        32.09        40.24         1.12        21.27 
TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22E TCGA-E9-A22G 
       34.13        32.05        13.32        39.09        12.89        23.51 
TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A244 TCGA-E9-A247 TCGA-E9-A248 TCGA-E9-A249 
       20.71        17.06         0.69        27.22         1.94         7.13 
TCGA-E9-A24A TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3QA TCGA-E9-A3X8 
       24.56         0.76        26.07        18.41        30.18        15.72 
TCGA-E9-A54X TCGA-E9-A5FK TCGA-E9-A6HE TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ 
       12.33        14.70        15.39        39.72         8.48        18.21 
TCGA-EW-A1J1 TCGA-EW-A1OV TCGA-EW-A1OW TCGA-EW-A1OX TCGA-EW-A1P0 TCGA-EW-A1P1 
       18.90        25.94        22.82        29.95        41.13        39.78 
TCGA-EW-A1P4 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1P8 TCGA-EW-A1PA TCGA-EW-A1PB 
       29.82        18.48        30.08         7.86        18.90        19.99 
TCGA-EW-A1PE TCGA-EW-A1PF TCGA-EW-A1PG TCGA-EW-A2FV TCGA-EW-A2FW TCGA-EW-A3E8 
       10.52        14.43        34.55        25.91        22.09        34.03 
TCGA-EW-A3U0 TCGA-EW-A424 TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2D9 TCGA-GM-A2DB 
       17.49        23.51         7.40       109.87        59.57        79.10 
TCGA-GM-A2DD TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A2DI TCGA-GM-A2DL TCGA-GM-A2DM 
       75.02        70.85        72.10        85.15       115.69       106.06 
TCGA-GM-A2DN TCGA-GM-A2DO TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XL 
      101.62        85.35       110.50        38.20        43.73        69.30 
TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2NL TCGA-HN-A2OB 
       66.38        72.03        13.55        18.12         2.60        62.43 
TCGA-JL-A3YX TCGA-LD-A66U TCGA-LD-A74U TCGA-LD-A7W5 TCGA-LD-A7W6 TCGA-LL-A440 
       11.57        21.24        13.22         7.10        13.28        24.95 
TCGA-LL-A441 TCGA-LL-A442 TCGA-LL-A50Y TCGA-LL-A5YL TCGA-LL-A5YO TCGA-LL-A5YP 
       11.44        10.95        25.05        17.06        14.47        14.79 
TCGA-LL-A6FP TCGA-LL-A6FQ TCGA-LL-A6FR TCGA-LL-A73Y TCGA-LL-A73Z TCGA-LL-A740 
       22.26         2.63        16.08        15.68         7.46        14.50 
TCGA-LL-A7SZ TCGA-LL-A8F5 TCGA-LL-A9Q3 TCGA-LQ-A4E4 TCGA-OK-A5Q2 TCGA-OL-A5D6 
       14.70        14.73        14.07        27.91         2.10        36.30 
TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RU TCGA-OL-A5RV TCGA-OL-A5RW 
       58.52        31.99        58.62        40.08        34.92        36.36 
TCGA-OL-A5RX TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66L TCGA-OL-A66N 
       28.87        26.70        23.47        65.62        42.77        26.04 
TCGA-OL-A66O TCGA-OL-A66P TCGA-OL-A6VQ TCGA-OL-A6VR TCGA-OL-A97C TCGA-PE-A5DC 
       17.36        14.07        19.73        40.11         8.91        47.01 
TCGA-PE-A5DD TCGA-PE-A5DE TCGA-PL-A8LX TCGA-PL-A8LY TCGA-PL-A8LZ TCGA-S3-A6ZF 
       64.21        86.96         0.16         0.26         9.93        16.50 
TCGA-S3-AA0Z TCGA-S3-AA11 TCGA-S3-AA12 TCGA-S3-AA15 TCGA-S3-AA17 TCGA-W8-A86G 
       16.80        13.84        15.35        13.84        13.94        11.41 
TCGA-WT-AB41 TCGA-WT-AB44 TCGA-XX-A899 TCGA-XX-A89A TCGA-Z7-A8R5 TCGA-Z7-A8R6 
       52.96        29.03        15.35        16.04       108.07       107.05 

  AMP PEAK 24(17Q12) MUTATED AMP PEAK 24(17Q12) WILD-TYPE 
                        0.03                         0.03 
  AMP PEAK 24(17Q12) MUTATED AMP PEAK 24(17Q12) WILD-TYPE 
                      216.76                       234.28 
  AMP PEAK 24(17Q12) MUTATED AMP PEAK 24(17Q12) WILD-TYPE 
                       23.87                        24.61 
[1] "0.0 - 216.8 (23.9)" "0.0 - 234.3 (24.6)"
[1] "hr=" "1.4"
D24V2, continuous
                              vv
clus                           STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  AMP PEAK 24(17Q12) MUTATED        21       17        1        1       119
  AMP PEAK 24(17Q12) WILD-TYPE      68       64        7        2       234
                              vv
clus                           STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  AMP PEAK 24(17Q12) MUTATED          81         1         49         10
  AMP PEAK 24(17Q12) WILD-TYPE       164         1        101         19
                              vv
clus                           STAGE IIIC STAGE IV STAGE TIS STAGE X
  AMP PEAK 24(17Q12) MUTATED           20        5         0       2
  AMP PEAK 24(17Q12) WILD-TYPE         43       15         1      11
D24V3, multiclass
            clus
vv           AMP PEAK 24(17Q12) MUTATED AMP PEAK 24(17Q12) WILD-TYPE
  STAGE I                            21                           68
  STAGE IA                           17                           64
  STAGE IB                            1                            7
  STAGE II                            1                            2
  STAGE IIA                         119                          234
  STAGE IIB                          81                          164
  STAGE III                           1                            1
  STAGE IIIA                         49                          101
  STAGE IIIB                         10                           19
  STAGE IIIC                         20                           43
  STAGE IV                            5                           15
  STAGE TIS                           0                            1
  STAGE X                             2                           11
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                            T1  T2  T3  T4
  AMP PEAK 24(17Q12) MUTATED    73 207  34  15
  AMP PEAK 24(17Q12) WILD-TYPE 199 409  96  25
D24V4, multiclass
    clus
vv   AMP PEAK 24(17Q12) MUTATED AMP PEAK 24(17Q12) WILD-TYPE
  T1                         73                          199
  T2                        207                          409
  T3                         34                           96
  T4                         15                           25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                            N0  N1  N2  N3
  AMP PEAK 24(17Q12) MUTATED   137 124  36  22
  AMP PEAK 24(17Q12) WILD-TYPE 364 226  81  53
D24V5, multiclass
    clus
vv   AMP PEAK 24(17Q12) MUTATED AMP PEAK 24(17Q12) WILD-TYPE
  N0                        137                          364
  N1                        124                          226
  N2                         36                           81
  N3                         22                           53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D24V6, binary
                              cls
clus                             0   1
  AMP PEAK 24(17Q12) MUTATED   287   5
  AMP PEAK 24(17Q12) WILD-TYPE 592  16
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 24(17Q12) MUTATED    287    5
  AMP PEAK 24(17Q12) WILD-TYPE  592   16
   clus
vv  AMP PEAK 24(17Q12) MUTATED AMP PEAK 24(17Q12) WILD-TYPE
  0                        287                          592
  1                          5                           16
[1] 2 2
[1] FALSE
D24V7, binary
                              cls
clus                             0   1
  AMP PEAK 24(17Q12) MUTATED   321   8
  AMP PEAK 24(17Q12) WILD-TYPE 730   3
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 24(17Q12) MUTATED    321    8
  AMP PEAK 24(17Q12) WILD-TYPE  730    3
        clus
vv       AMP PEAK 24(17Q12) MUTATED AMP PEAK 24(17Q12) WILD-TYPE
  FEMALE                        321                          730
  MALE                            8                            3
[1] 2 2
[1] FALSE
                              vv
clus                           INFILTRATING CARCINOMA NOS
  AMP PEAK 24(17Q12) MUTATED                            0
  AMP PEAK 24(17Q12) WILD-TYPE                          1
                              vv
clus                           INFILTRATING DUCTAL CARCINOMA
  AMP PEAK 24(17Q12) MUTATED                             268
  AMP PEAK 24(17Q12) WILD-TYPE                           495
                              vv
clus                           INFILTRATING LOBULAR CARCINOMA
  AMP PEAK 24(17Q12) MUTATED                               37
  AMP PEAK 24(17Q12) WILD-TYPE                            155
                              vv
clus                           MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  AMP PEAK 24(17Q12) MUTATED                     1                     2
  AMP PEAK 24(17Q12) WILD-TYPE                   5                     2
                              vv
clus                           MIXED HISTOLOGY (PLEASE SPECIFY)
  AMP PEAK 24(17Q12) MUTATED                                  5
  AMP PEAK 24(17Q12) WILD-TYPE                               25
                              vv
clus                           MUCINOUS CARCINOMA OTHER  SPECIFY
  AMP PEAK 24(17Q12) MUTATED                    4             12
  AMP PEAK 24(17Q12) WILD-TYPE                 13             36
D24V8, multiclass
                                  clus
vv                                 AMP PEAK 24(17Q12) MUTATED
  INFILTRATING CARCINOMA NOS                                0
  INFILTRATING DUCTAL CARCINOMA                           268
  INFILTRATING LOBULAR CARCINOMA                           37
  MEDULLARY CARCINOMA                                       1
  METAPLASTIC CARCINOMA                                     2
  MIXED HISTOLOGY (PLEASE SPECIFY)                          5
  MUCINOUS CARCINOMA                                        4
  OTHER  SPECIFY                                           12
                                  clus
vv                                 AMP PEAK 24(17Q12) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                  1
  INFILTRATING DUCTAL CARCINOMA                             495
  INFILTRATING LOBULAR CARCINOMA                            155
  MEDULLARY CARCINOMA                                         5
  METAPLASTIC CARCINOMA                                       2
  MIXED HISTOLOGY (PLEASE SPECIFY)                           25
  MUCINOUS CARCINOMA                                         13
  OTHER  SPECIFY                                             36
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D24V9, binary
                              cls
clus                             0   1
  AMP PEAK 24(17Q12) MUTATED    97 232
  AMP PEAK 24(17Q12) WILD-TYPE 191 542
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 24(17Q12) MUTATED     97  232
  AMP PEAK 24(17Q12) WILD-TYPE  191  542
     clus
vv    AMP PEAK 24(17Q12) MUTATED AMP PEAK 24(17Q12) WILD-TYPE
  NO                          97                          191
  YES                        232                          542
[1] 2 2
[1] FALSE
D24V10, continuous
                              vv
clus                           AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK 24(17Q12) MUTATED                                  1    30
  AMP PEAK 24(17Q12) WILD-TYPE                                0    30
                              vv
clus                           BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 24(17Q12) MUTATED                          49   208
  AMP PEAK 24(17Q12) WILD-TYPE                       121   528
D24V11, multiclass
                                  clus
vv                                 AMP PEAK 24(17Q12) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                          1
  ASIAN                                                    30
  BLACK OR AFRICAN AMERICAN                                49
  WHITE                                                   208
                                  clus
vv                                 AMP PEAK 24(17Q12) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                            0
  ASIAN                                                      30
  BLACK OR AFRICAN AMERICAN                                 121
  WHITE                                                     528
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D24V12, binary
                              cls
clus                             0   1
  AMP PEAK 24(17Q12) MUTATED    11 260
  AMP PEAK 24(17Q12) WILD-TYPE  27 598
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 24(17Q12) MUTATED     11  260
  AMP PEAK 24(17Q12) WILD-TYPE   27  598
                        clus
vv                       AMP PEAK 24(17Q12) MUTATED
  HISPANIC OR LATINO                             11
  NOT HISPANIC OR LATINO                        260
                        clus
vv                       AMP PEAK 24(17Q12) WILD-TYPE
  HISPANIC OR LATINO                               27
  NOT HISPANIC OR LATINO                          598
[1] 2 2
[1] FALSE

Clustering(25) Variable = AMP PEAK 25(17Q23.1) MUTATION ANALYSIS
D25V1, survival
                                sevent
clus2                              0   1
  AMP PEAK 25(17Q23.1) MUTATED   358  55
  AMP PEAK 25(17Q23.1) WILD-TYPE 558  73
  AMP PEAK 25(17Q23.1) MUTATED AMP PEAK 25(17Q23.1) WILD-TYPE 
                           413                            631 
  AMP PEAK 25(17Q23.1) MUTATED AMP PEAK 25(17Q23.1) WILD-TYPE 
                            55                             73 
$`AMP PEAK 25(17Q23.1) MUTATED`
TCGA-3C-AALI TCGA-3C-AALJ TCGA-3C-AALK TCGA-4H-AAAK TCGA-5T-A9QA TCGA-A1-A0SH 
      131.67        42.81        40.14        11.44         9.96        47.24 
TCGA-A1-A0SJ TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SO TCGA-A2-A04R TCGA-A2-A04U 
       13.68         7.96        39.32        28.01       121.94        87.25 
TCGA-A2-A04X TCGA-A2-A04Y TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CX TCGA-A2-A0D2 
       55.43        36.13        75.25         5.19        56.81        33.76 
TCGA-A2-A0D4 TCGA-A2-A0EQ TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0SU 
       25.22        79.76        35.05        34.29        31.82        54.64 
TCGA-A2-A0SW TCGA-A2-A0T0 TCGA-A2-A0T3 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YG 
       44.88        17.52        49.84        20.75        32.55        21.90 
TCGA-A2-A0YL TCGA-A2-A0YM TCGA-A2-A0YT TCGA-A2-A1FW TCGA-A2-A1FX TCGA-A2-A1G0 
       48.46        31.73        23.77        17.36        60.72        20.25 
TCGA-A2-A259 TCGA-A2-A25B TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A3XT TCGA-A2-A3XU 
       52.47        42.44        18.15       105.34        83.01        29.98 
TCGA-A2-A3XV TCGA-A2-A3XX TCGA-A2-A3XZ TCGA-A2-A4S1 TCGA-A2-A4S3 TCGA-A7-A0CD 
       32.75        47.31        50.37        26.96        21.90        38.30 
TCGA-A7-A0CJ TCGA-A7-A0DA TCGA-A7-A0DC TCGA-A7-A13F TCGA-A7-A26H TCGA-A7-A26J 
       30.61        35.67        29.79        25.15        23.80        20.61 
TCGA-A7-A2KD TCGA-A7-A3J0 TCGA-A7-A4SA TCGA-A7-A4SB TCGA-A7-A4SD TCGA-A7-A4SF 
       22.32        10.29        14.93        13.74        14.50        17.92 
TCGA-A7-A56D TCGA-A7-A5ZV TCGA-A8-A06O TCGA-A8-A06R TCGA-A8-A06U TCGA-A8-A06X 
       14.73        12.10        13.02        17.98        29.03        31.00 
TCGA-A8-A06Z TCGA-A8-A076 TCGA-A8-A079 TCGA-A8-A07B TCGA-A8-A07G TCGA-A8-A07I 
        1.02        53.98         9.01        43.00        18.97        14.01 
TCGA-A8-A07L TCGA-A8-A07P TCGA-A8-A07R TCGA-A8-A07W TCGA-A8-A07Z TCGA-A8-A085 
       32.05        10.98         8.98         9.99        45.07        36.95 
TCGA-A8-A086 TCGA-A8-A08F TCGA-A8-A08G TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08O 
       13.02        33.01        19.96        37.05         9.99        31.00 
TCGA-A8-A08P TCGA-A8-A08R TCGA-A8-A08S TCGA-A8-A092 TCGA-A8-A093 TCGA-A8-A097 
       31.00         0.99        33.01        30.97        17.95        12.00 
TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09D TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K 
        9.99        12.00        50.04        49.05        45.07        29.98 
TCGA-A8-A09M TCGA-A8-A09N TCGA-A8-A09Q TCGA-A8-A09R TCGA-A8-A09W TCGA-A8-A09X 
       33.07         1.02        25.02         8.98         0.99        14.01 
TCGA-A8-A0A7 TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23G TCGA-AC-A23H 
        0.99        17.03        38.04         0.95        10.85         5.72 
TCGA-AC-A2FM TCGA-AC-A2QH TCGA-AC-A2QJ TCGA-AC-A62V TCGA-AC-A6IV TCGA-AC-A7VB 
       26.04        33.04         2.27        11.44        18.67         8.22 
TCGA-AC-A8OP TCGA-AN-A041 TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A04D 
       20.19         0.23         0.62         2.96         1.78         1.71 
TCGA-AN-A0AJ TCGA-AN-A0AM TCGA-AN-A0FD TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FW 
        9.96         0.16         6.44         7.04         0.33         0.36 
TCGA-AN-A0FY TCGA-AN-A0FZ TCGA-AN-A0XL TCGA-AN-A0XR TCGA-AN-A0XU TCGA-AN-A0XW 
        0.33         0.33         0.33         0.33         0.33         5.59 
TCGA-AO-A03L TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A0J2 TCGA-AO-A0J3 
       80.28        95.70        68.75        47.87        32.78        21.40 
TCGA-AO-A0J4 TCGA-AO-A0J5 TCGA-AO-A0J7 TCGA-AO-A0JB TCGA-AO-A0JG TCGA-AO-A0JJ 
       52.18        26.04        20.32        50.70        26.24        62.04 
TCGA-AO-A0JM TCGA-AO-A124 TCGA-AO-A12B TCGA-AO-A12E TCGA-AO-A1KQ TCGA-AO-A1KR 
       71.80       102.58        98.27        57.30        61.87        70.39 
TCGA-AO-A1KS TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A0Y5 TCGA-AQ-A1H3 TCGA-AQ-A54O 
        0.53        24.79        26.93         5.65        32.52        32.91 
TCGA-AR-A0TQ TCGA-AR-A0TT TCGA-AR-A0TW TCGA-AR-A0TY TCGA-AR-A0U2 TCGA-AR-A0U4 
       73.64        86.66        98.93        55.86        83.87        85.97 
TCGA-AR-A1AK TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A24H TCGA-AR-A24K TCGA-AR-A24L 
       51.25        61.28        63.62       160.90        50.89        94.22 
TCGA-AR-A24P TCGA-AR-A24Q TCGA-AR-A24R TCGA-AR-A24S TCGA-AR-A24V TCGA-AR-A24Z 
        2.76       104.28        87.22        97.84        85.35        79.00 
TCGA-AR-A250 TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LJ 
       89.00        73.18        72.76        58.92        93.83        62.86 
TCGA-AR-A2LK TCGA-AR-A2LL TCGA-AR-A2LR TCGA-B6-A0I9 TCGA-B6-A0IE TCGA-B6-A0IG 
       54.21        66.15        20.38        12.13        65.72       146.50 
TCGA-B6-A0IK TCGA-B6-A0IO TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RS 
       18.77       110.14       211.56        68.45       189.01       100.70 
TCGA-B6-A0RV TCGA-B6-A0WV TCGA-B6-A0WY TCGA-B6-A0X1 TCGA-B6-A1KC TCGA-B6-A1KI 
      157.41        79.63       113.79       186.48        43.59        73.51 
TCGA-B6-A2IU TCGA-B6-A401 TCGA-B6-A402 TCGA-BH-A0AU TCGA-BH-A0AW TCGA-BH-A0AY 
      170.17        85.35        74.99        24.53        20.45        25.55 
TCGA-BH-A0AZ TCGA-BH-A0B4 TCGA-BH-A0BC TCGA-BH-A0BF TCGA-BH-A0BG TCGA-BH-A0BP 
       28.50        39.16        32.02        25.71        24.85        48.69 
TCGA-BH-A0BT TCGA-BH-A0BW TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C3 TCGA-BH-A0C7 
       45.57        11.67        49.05        41.75        48.13        42.90 
TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DP 
       45.83        31.17        23.44        22.13        13.91        15.65 
TCGA-BH-A0DZ TCGA-BH-A0E2 TCGA-BH-A0H7 TCGA-BH-A0HB TCGA-BH-A0HQ TCGA-BH-A0HU 
       16.27        14.30        23.08        26.50        36.85        12.89 
TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0WA TCGA-BH-A18G TCGA-BH-A18L 
       51.32        27.25        50.79        23.05         2.01        26.66 
TCGA-BH-A18N TCGA-BH-A18Q TCGA-BH-A18R TCGA-BH-A18S TCGA-BH-A18U TCGA-BH-A1EN 
       37.74        55.63        37.55        66.05        51.39        69.93 
TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1EX TCGA-BH-A1F2 TCGA-BH-A1FC TCGA-BH-A1FG 
       12.00        55.69        49.58        31.53       114.15       122.89 
TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FM TCGA-BH-A1FN TCGA-BH-A202 TCGA-BH-A203 
       36.92        63.35        45.63        72.07        26.14        38.60 
TCGA-BH-A204 TCGA-BH-A209 TCGA-BH-A42T TCGA-BH-A5IZ TCGA-BH-A6R8 TCGA-C8-A12L 
       83.31       130.16        10.52        18.64         9.63        11.93 
TCGA-C8-A12M TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12U TCGA-C8-A12W 
       11.77        12.66        11.77        12.66        12.66        12.66 
TCGA-C8-A12Z TCGA-C8-A130 TCGA-C8-A135 TCGA-C8-A138 TCGA-C8-A1HF TCGA-C8-A1HG 
        0.39         3.16         1.05         4.08        10.92        11.34 
TCGA-C8-A1HI TCGA-C8-A1HK TCGA-C8-A1HL TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A26X 
       11.28        12.03        10.42         2.30         3.25         0.36 
TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A3M8 
        8.28         9.67         0.03         9.50        12.20         0.23 
TCGA-C8-A8HP TCGA-C8-A9FZ TCGA-D8-A13Y TCGA-D8-A140 TCGA-D8-A142 TCGA-D8-A143 
       13.02        19.46        11.90        13.25        13.97        14.17 
TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JJ TCGA-D8-A1JK 
       18.71        15.78        12.03        12.03        20.09        20.12 
TCGA-D8-A1JT TCGA-D8-A1X7 TCGA-D8-A1X9 TCGA-D8-A1XB TCGA-D8-A1XF TCGA-D8-A1XM 
       13.32        16.73        23.90        18.15        15.22        17.69 
TCGA-D8-A1XQ TCGA-D8-A1XS TCGA-D8-A1XT TCGA-D8-A1XY TCGA-D8-A1Y2 TCGA-D8-A27G 
       16.41        16.31         6.35        16.54        14.24        13.45 
TCGA-D8-A27H TCGA-D8-A27N TCGA-D8-A27R TCGA-D8-A27V TCGA-D8-A27W TCGA-E2-A105 
       13.05         4.80        10.09        12.53        12.26        43.00 
TCGA-E2-A107 TCGA-E2-A10C TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14R TCGA-E2-A14T 
       34.42        40.11        44.68        40.96        38.60        33.30 
TCGA-E2-A14V TCGA-E2-A14W TCGA-E2-A14Y TCGA-E2-A153 TCGA-E2-A155 TCGA-E2-A15A 
       34.26        32.02        28.60        23.24        21.04        23.34 
TCGA-E2-A15H TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B5 
       12.92        14.07        14.99        53.62        53.03        32.35 
TCGA-E2-A1IE TCGA-E2-A1IG TCGA-E2-A1IH TCGA-E2-A1IJ TCGA-E2-A1LA TCGA-E2-A1LK 
       38.30        32.78        33.73        28.44        24.59         8.75 
TCGA-E2-A56Z TCGA-E2-A574 TCGA-E9-A1N8 TCGA-E9-A1NA TCGA-E9-A1NF TCGA-E9-A1NI 
        8.28        26.56        12.00        36.56        35.24         9.86 
TCGA-E9-A1QZ TCGA-E9-A1R2 TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1R7 
       11.90        34.95         6.12         3.02         2.76        21.21 
TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RH TCGA-E9-A1RI TCGA-E9-A226 TCGA-E9-A228 
       34.65         6.58        34.59        35.64        34.13        12.53 
TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A243 TCGA-E9-A244 
       39.09        22.75        41.03        12.89        17.06         0.69 
TCGA-E9-A247 TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A54Y TCGA-E9-A5FL TCGA-E9-A5UO 
       27.22         0.72        29.72        23.84         0.79        13.81 
TCGA-E9-A5UP TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1J5 TCGA-EW-A1J6 TCGA-EW-A1OW 
       14.40        18.90        13.25        15.68        28.77        22.82 
TCGA-EW-A1OX TCGA-EW-A1OY TCGA-EW-A1OZ TCGA-EW-A1P3 TCGA-EW-A1P4 TCGA-EW-A1P5 
       29.95        29.85        40.41        52.96        29.82        23.11 
TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FS 
       19.99         6.15        13.94        34.55        19.96        52.73 
TCGA-EW-A2FV TCGA-EW-A3U0 TCGA-EW-A423 TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2DA 
       25.91        17.49        10.16         7.40       109.87       216.76 
TCGA-GM-A2DC TCGA-GM-A2DK TCGA-GM-A2DO TCGA-GM-A3XL TCGA-HN-A2NL TCGA-LD-A7W5 
       83.34        86.96        85.35        69.30         2.60         7.10 
TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A5YP TCGA-LL-A73Y TCGA-LL-A7SZ TCGA-LL-A7T0 
       15.32        14.70        14.79        15.68        14.70        12.36 
TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OL-A5RZ TCGA-OL-A66K TCGA-OL-A66P TCGA-OL-A6VO 
       27.91        22.39        22.32        41.92        14.07        28.21 
TCGA-PL-A8LZ TCGA-S3-A6ZG TCGA-S3-A6ZH TCGA-S3-AA10 TCGA-UL-AAZ6 
        9.93        13.12        16.93        15.39        17.03 

$`AMP PEAK 25(17Q23.1) WILD-TYPE`
TCGA-3C-AAAU TCGA-5L-AAT0 TCGA-5L-AAT1 TCGA-A1-A0SB TCGA-A1-A0SD TCGA-A1-A0SE 
      129.14        48.56        48.36         8.52        14.37        43.43 
TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SI TCGA-A1-A0SK TCGA-A1-A0SP TCGA-A1-A0SQ 
       48.10        14.27        20.88        31.79        19.20        18.21 
TCGA-A2-A04N TCGA-A2-A04P TCGA-A2-A04Q TCGA-A2-A04T TCGA-A2-A04V TCGA-A2-A04W 
      104.81        18.02        78.41        73.84        63.12       101.98 
TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CQ 
      136.73        99.12        24.79       114.81        92.48        88.60 
TCGA-A2-A0CR TCGA-A2-A0CS TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0D0 TCGA-A2-A0D1 
      107.93        75.55        98.99       107.93        67.33        34.55 
TCGA-A2-A0D3 TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0ER 
       61.58       101.72       134.40        80.28       107.61        74.40 
TCGA-A2-A0ES TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0EY TCGA-A2-A0ST TCGA-A2-A0SV 
       72.00        61.94        24.72        63.29        99.19        27.12 
TCGA-A2-A0SX TCGA-A2-A0SY TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T4 TCGA-A2-A0T5 
       50.43        44.28        17.13         8.38        20.52        17.46 
TCGA-A2-A0T6 TCGA-A2-A0YD TCGA-A2-A0YE TCGA-A2-A0YF TCGA-A2-A0YH TCGA-A2-A0YI 
       18.90        25.28        18.21        50.47        21.67        49.48 
TCGA-A2-A0YJ TCGA-A2-A0YK TCGA-A2-A1FV TCGA-A2-A1FZ TCGA-A2-A1G1 TCGA-A2-A1G4 
       18.61        19.33        23.47        22.45        19.20        19.56 
TCGA-A2-A1G6 TCGA-A2-A25A TCGA-A2-A25C TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD 
       16.47       107.70        17.19        10.59        20.88        39.65 
TCGA-A2-A3XS TCGA-A2-A3XW TCGA-A2-A3XY TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4RX 
       33.93        49.48        34.98        38.37         7.30        24.39 
TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S2 TCGA-A7-A0CE TCGA-A7-A0CG TCGA-A7-A0CH 
       21.30        23.21        21.14        35.31        34.29        35.47 
TCGA-A7-A0D9 TCGA-A7-A0DB TCGA-A7-A13D TCGA-A7-A13E TCGA-A7-A13G TCGA-A7-A13H 
       37.45        33.11        31.73        20.19        23.61        29.56 
TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26G TCGA-A7-A26I TCGA-A7-A3IY TCGA-A7-A3IZ 
       31.36        24.26        23.74        21.73        11.34        10.59 
TCGA-A7-A3J1 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A426 TCGA-A7-A4SE TCGA-A7-A5ZW 
       11.28        13.41        14.70        11.97        21.17        10.72 
TCGA-A7-A5ZX TCGA-A7-A6VV TCGA-A7-A6VW TCGA-A7-A6VX TCGA-A7-A6VY TCGA-A8-A06P 
       11.05        10.29         9.37        10.42         8.75        13.02 
TCGA-A8-A06Q TCGA-A8-A06T TCGA-A8-A06Y TCGA-A8-A075 TCGA-A8-A07E TCGA-A8-A07F 
        1.02        53.06        26.01        17.03        19.99        18.97 
TCGA-A8-A07J TCGA-A8-A07O TCGA-A8-A07S TCGA-A8-A07U TCGA-A8-A082 TCGA-A8-A084 
       12.00         9.99         7.99        24.99        18.05        15.06 
TCGA-A8-A08A TCGA-A8-A08B TCGA-A8-A08C TCGA-A8-A08I TCGA-A8-A08T TCGA-A8-A08X 
        0.99        38.01        28.96        12.00       112.08        43.00 
TCGA-A8-A08Z TCGA-A8-A091 TCGA-A8-A095 TCGA-A8-A099 TCGA-A8-A09C TCGA-A8-A09T 
       40.01        33.01        41.98         9.99         1.02        19.04 
TCGA-A8-A09V TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A9 
       15.02        12.00        19.04        13.02        21.04        27.02 
TCGA-AC-A23E TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FF 
        2.37         1.48        38.53        99.35        40.57        55.43 
TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FO TCGA-AC-A2QI TCGA-AC-A3BB TCGA-AC-A3HN 
       36.99        38.79        50.70         0.92        32.45        16.31 
TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3TN TCGA-AC-A3W5 TCGA-AC-A3W6 TCGA-AC-A3YI 
       14.83        22.19        14.99        16.57        19.79        23.24 
TCGA-AC-A3YJ TCGA-AC-A5XS TCGA-AC-A62X TCGA-AC-A62Y TCGA-AC-A6IW TCGA-AC-A6IX 
       24.79         1.55        13.71        17.42        13.58        12.26 
TCGA-AC-A6NO TCGA-AC-A7VC TCGA-AC-A8OQ TCGA-AC-A8OR TCGA-AC-A8OS TCGA-AN-A03X 
        1.68         0.03         1.12         1.32         2.30         0.33 
TCGA-AN-A03Y TCGA-AN-A046 TCGA-AN-A0AK TCGA-AN-A0AL TCGA-AN-A0AR TCGA-AN-A0AS 
        0.33         0.33         7.36         6.51         0.33         0.33 
TCGA-AN-A0AT TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FN 
        0.33         5.65         7.96         7.00         7.59         7.17 
TCGA-AN-A0FS TCGA-AN-A0FX TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XS 
        6.28         0.33         0.33        12.33         0.30         0.33 
TCGA-AN-A0XT TCGA-AN-A0XV TCGA-AO-A03M TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03U 
        0.33         5.33        61.35        66.77        81.63        58.95 
TCGA-AO-A03V TCGA-AO-A0J6 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JC 
       29.13        37.48        22.36        53.03        21.53        50.86 
TCGA-AO-A0JD TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JI TCGA-AO-A0JL TCGA-AO-A125 
       72.00        76.77        21.37        50.24        55.33        99.25 
TCGA-AO-A126 TCGA-AO-A128 TCGA-AO-A129 TCGA-AO-A12A TCGA-AO-A12D TCGA-AO-A12F 
      108.72       106.78       108.03        90.58        64.04        48.36 
TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KT TCGA-AQ-A04L 
       41.62        28.37        14.73        82.62        17.79       130.09 
TCGA-AQ-A1H2 TCGA-AQ-A54N TCGA-AQ-A7U7 TCGA-AR-A0TP TCGA-AR-A0TR TCGA-AR-A0TS 
       15.62         2.56        19.20       111.32         5.26        74.79 
TCGA-AR-A0TV TCGA-AR-A0TX TCGA-AR-A0TZ TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A0U3 
       42.35        64.83       107.24        65.36       101.95       114.02 
TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AL TCGA-AR-A1AM TCGA-AR-A1AN 
       75.55        61.84        52.77        48.82        76.11        43.73 
TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AQ TCGA-AR-A1AR TCGA-AR-A1AS TCGA-AR-A1AU 
       43.56        39.98        43.07        17.23        37.81        76.21 
TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24T 
       62.14        33.73        96.89        78.51        84.20        76.01 
TCGA-AR-A24U TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A251 TCGA-AR-A2LE TCGA-AR-A2LH 
       53.36        50.96        83.77        78.48       143.21        20.25 
TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A5QM TCGA-AR-A5QN 
       52.11        38.17        39.39        40.54        54.74        16.04 
TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0IA 
       20.45        10.59        77.62       143.38       149.59       220.90 
TCGA-B6-A0IB TCGA-B6-A0IC TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IM TCGA-B6-A0IN 
      129.57        50.70       112.37       176.98       126.12        84.59 
TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RI TCGA-B6-A0RL TCGA-B6-A0RM TCGA-B6-A0RN 
      110.93       140.88       234.28        81.17        78.02       172.96 
TCGA-B6-A0RO TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RU TCGA-B6-A0WS 
      162.05       102.77       140.48        89.46       131.21        97.48 
TCGA-B6-A0WT TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X4 
      188.68        18.35        21.47       129.57       129.70        28.27 
TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KF TCGA-B6-A1KN TCGA-B6-A408 TCGA-B6-A40B 
       68.94        58.88       101.52       139.17        68.12       103.63 
TCGA-B6-A40C TCGA-BH-A0AV TCGA-BH-A0B0 TCGA-BH-A0B2 TCGA-BH-A0B3 TCGA-BH-A0B5 
       71.15        59.84        46.95        40.83        39.55        48.36 
TCGA-BH-A0B6 TCGA-BH-A0B7 TCGA-BH-A0B9 TCGA-BH-A0BA TCGA-BH-A0BD TCGA-BH-A0BJ 
       56.94        56.98        51.68        37.22        18.21        21.70 
TCGA-BH-A0BL TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS 
       44.05        61.68        35.67        27.19        53.69        53.95 
TCGA-BH-A0BV TCGA-BH-A0C1 TCGA-BH-A0DH TCGA-BH-A0DL TCGA-BH-A0DO TCGA-BH-A0DQ 
       49.94        44.02        38.01        48.23        17.26         3.22 
TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0E0 TCGA-BH-A0E1 
        2.56        38.47        67.86        47.41         4.41        15.68 
TCGA-BH-A0E6 TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EA TCGA-BH-A0EB TCGA-BH-A0EE 
        9.63        44.81        46.19        32.58        24.49        31.00 
TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 
       24.43        30.35        10.78        15.16        37.78        35.51 
TCGA-BH-A0H6 TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HO 
       24.56        41.00        52.96        20.38         5.85         2.50 
TCGA-BH-A0HP TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 
       13.61         5.59        23.93        24.95        42.35        44.81 
TCGA-BH-A18F TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18K TCGA-BH-A18M TCGA-BH-A18P 
        8.81         7.23        20.12        90.84        72.56        30.28 
TCGA-BH-A18T TCGA-BH-A18V TCGA-BH-A1EO TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EU 
        7.36        51.16        91.99       113.82        82.85        42.28 
TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F5 TCGA-BH-A1F6 TCGA-BH-A1F8 TCGA-BH-A1FB 
       17.69        25.81        89.16        97.48        24.66       120.62 
TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FL TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A201 
       33.17        74.73        55.00       144.59        72.07        28.14 
TCGA-BH-A208 TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42U TCGA-BH-A42V 
       57.83        10.65         6.44        20.12       109.28         8.94 
TCGA-BH-A5J0 TCGA-BH-A6R9 TCGA-BH-A8FY TCGA-BH-A8FZ TCGA-BH-A8G0 TCGA-BH-AB28 
       23.51         5.26         9.70        18.87        21.76         9.44 
TCGA-C8-A12N TCGA-C8-A12V TCGA-C8-A12X TCGA-C8-A131 TCGA-C8-A132 TCGA-C8-A134 
       11.77        12.66        12.66         2.24         1.87         1.12 
TCGA-C8-A137 TCGA-C8-A1HE TCGA-C8-A1HJ TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A26Y 
        4.11        12.33         0.16         0.30         0.23         0.43 
TCGA-C8-A274 TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A8HQ TCGA-C8-A8HR TCGA-D8-A13Z 
        9.53         0.99         0.03        12.49        13.41        20.88 
TCGA-D8-A141 TCGA-D8-A145 TCGA-D8-A146 TCGA-D8-A147 TCGA-D8-A1J8 TCGA-D8-A1J9 
       20.58        13.48        21.14        19.20        14.17        17.49 
TCGA-D8-A1JA TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JH TCGA-D8-A1JI TCGA-D8-A1JL 
       16.50        18.15        18.90        14.01        18.97        20.09 
TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1JP TCGA-D8-A1JS TCGA-D8-A1JU TCGA-D8-A1X5 
       19.40        20.38        21.01        12.20        14.70        18.58 
TCGA-D8-A1X6 TCGA-D8-A1X8 TCGA-D8-A1XA TCGA-D8-A1XC TCGA-D8-A1XD TCGA-D8-A1XG 
       17.79        25.74        27.58        12.39        17.16        14.73 
TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XL TCGA-D8-A1XO TCGA-D8-A1XR TCGA-D8-A1XU 
       21.83        14.50        19.92        15.55        15.85        12.99 
TCGA-D8-A1XV TCGA-D8-A1XW TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y3 
       15.16        12.66        15.32        15.52         9.93        14.14 
TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27M 
       17.42        16.04        14.43         9.44        16.41        13.48 
TCGA-D8-A27P TCGA-D8-A27T TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-D8-A73U 
        0.76        13.08        33.37        18.51        21.67        16.18 
TCGA-D8-A73W TCGA-D8-A73X TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10B 
        8.02        12.10        27.52        46.59        40.41        37.51 
TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14Q TCGA-E2-A14S TCGA-E2-A14U 
       28.44        28.87        47.15        38.24        33.17        43.33 
TCGA-E2-A14X TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A154 TCGA-E2-A156 
       31.96        18.51        25.41        27.12        19.43        23.87 
TCGA-E2-A158 TCGA-E2-A159 TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15E TCGA-E2-A15F 
       14.79        25.05        22.82        17.29        20.71        21.63 
TCGA-E2-A15G TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M 
       18.21        17.42        19.40         9.04        20.58        11.05 
TCGA-E2-A15O TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A1AZ TCGA-E2-A1B4 TCGA-E2-A1B6 
       13.02        19.56        17.06        60.53        33.01        28.50 
TCGA-E2-A1BC TCGA-E2-A1BD TCGA-E2-A1IF TCGA-E2-A1II TCGA-E2-A1IK TCGA-E2-A1IL 
       16.47        17.10        37.41        33.70        22.65         3.88 
TCGA-E2-A1IN TCGA-E2-A1IO TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L8 
       22.19        20.98        11.08        54.18        27.42        39.62 
TCGA-E2-A1L9 TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LG TCGA-E2-A1LH TCGA-E2-A1LI 
       19.66        40.47        28.90        18.87       106.75       102.61 
TCGA-E2-A1LL TCGA-E2-A2P5 TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A570 TCGA-E2-A573 
       43.04        16.93         5.52        15.72        30.61        34.92 
TCGA-E2-A576 TCGA-E2-A9RU TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N6 
       34.29        12.85        34.82        32.88        36.82        13.48 
TCGA-E9-A1N9 TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NG TCGA-E9-A1R0 
       13.12        39.55        12.59        35.77        25.84        28.27 
TCGA-E9-A1R3 TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RD TCGA-E9-A1RG 
        2.56        32.09        32.09        40.24         1.12        21.27 
TCGA-E9-A227 TCGA-E9-A229 TCGA-E9-A22G TCGA-E9-A22H TCGA-E9-A248 TCGA-E9-A249 
       32.05        13.32        23.51        20.71         1.94         7.13 
TCGA-E9-A24A TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3QA TCGA-E9-A3X8 
       24.56         0.76        26.07        18.41        30.18        15.72 
TCGA-E9-A54X TCGA-E9-A5FK TCGA-E9-A6HE TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY 
       12.33        14.70        15.39        12.20        39.72         8.48 
TCGA-EW-A1IZ TCGA-EW-A1J3 TCGA-EW-A1OV TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P6 
       18.21        16.57        25.94        41.13        39.78        18.48 
TCGA-EW-A1P7 TCGA-EW-A1P8 TCGA-EW-A1PA TCGA-EW-A1PE TCGA-EW-A1PF TCGA-EW-A2FR 
       30.08         7.86        18.90        10.52        14.43        55.00 
TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A424 TCGA-GM-A2D9 TCGA-GM-A2DB TCGA-GM-A2DD 
       22.09        34.03        23.51        59.57        79.10        75.02 
TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A2DI TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN 
       70.85        72.10        85.15       115.69       106.06       101.62 
TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV 
      110.50        38.20        43.73        66.38        72.03        13.55 
TCGA-GM-A5PX TCGA-HN-A2OB TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LD-A66U TCGA-LD-A74U 
       18.12        62.43        11.84        11.57        21.24        13.22 
TCGA-LD-A7W6 TCGA-LD-A9QF TCGA-LL-A440 TCGA-LL-A441 TCGA-LL-A442 TCGA-LL-A50Y 
       13.28        10.62        24.95        11.44        10.95        25.05 
TCGA-LL-A5YL TCGA-LL-A5YO TCGA-LL-A6FP TCGA-LL-A6FQ TCGA-LL-A6FR TCGA-LL-A73Z 
       17.06        14.47        22.26         2.63        16.08         7.46 
TCGA-LL-A740 TCGA-LL-A8F5 TCGA-LL-A9Q3 TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5D7 
       14.50        14.73        14.07         2.10        36.30        58.52 
TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RU TCGA-OL-A5RV TCGA-OL-A5RW TCGA-OL-A5RX 
       31.99        58.62        40.08        34.92        36.36        28.87 
TCGA-OL-A5RY TCGA-OL-A5S0 TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66L 
       24.72        20.38        26.70        23.47        65.62        42.77 
TCGA-OL-A66N TCGA-OL-A66O TCGA-OL-A6VQ TCGA-OL-A6VR TCGA-OL-A97C TCGA-PE-A5DC 
       26.04        17.36        19.73        40.11         8.91        47.01 
TCGA-PE-A5DD TCGA-PE-A5DE TCGA-PL-A8LX TCGA-PL-A8LY TCGA-S3-A6ZF TCGA-S3-AA0Z 
       64.21        86.96         0.16         0.26        16.50        16.80 
TCGA-S3-AA11 TCGA-S3-AA12 TCGA-S3-AA14 TCGA-S3-AA15 TCGA-S3-AA17 TCGA-UU-A93S 
       13.84        15.35        14.96        13.84        13.94         3.81 
TCGA-W8-A86G TCGA-WT-AB41 TCGA-WT-AB44 TCGA-XX-A899 TCGA-XX-A89A TCGA-Z7-A8R5 
       11.41        52.96        29.03        15.35        16.04       108.07 
TCGA-Z7-A8R6 
      107.05 

  AMP PEAK 25(17Q23.1) MUTATED AMP PEAK 25(17Q23.1) WILD-TYPE 
                          0.03                           0.03 
  AMP PEAK 25(17Q23.1) MUTATED AMP PEAK 25(17Q23.1) WILD-TYPE 
                        216.76                         234.28 
  AMP PEAK 25(17Q23.1) MUTATED AMP PEAK 25(17Q23.1) WILD-TYPE 
                         24.85                          24.39 
[1] "0.0 - 216.8 (24.9)" "0.0 - 234.3 (24.4)"
[1] "hr=" "1.3"
D25V2, continuous
                                vv
clus                             STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  AMP PEAK 25(17Q23.1) MUTATED        27       23        2        1       151
  AMP PEAK 25(17Q23.1) WILD-TYPE      62       58        6        2       202
                                vv
clus                             STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  AMP PEAK 25(17Q23.1) MUTATED         100         1         66         16
  AMP PEAK 25(17Q23.1) WILD-TYPE       145         1         84         13
                                vv
clus                             STAGE IIIC STAGE IV STAGE TIS STAGE X
  AMP PEAK 25(17Q23.1) MUTATED           20        9         1       2
  AMP PEAK 25(17Q23.1) WILD-TYPE         43       11         0      11
D25V3, multiclass
            clus
vv           AMP PEAK 25(17Q23.1) MUTATED AMP PEAK 25(17Q23.1) WILD-TYPE
  STAGE I                              27                             62
  STAGE IA                             23                             58
  STAGE IB                              2                              6
  STAGE II                              1                              2
  STAGE IIA                           151                            202
  STAGE IIB                           100                            145
  STAGE III                             1                              1
  STAGE IIIA                           66                             84
  STAGE IIIB                           16                             13
  STAGE IIIC                           20                             43
  STAGE IV                              9                             11
  STAGE TIS                             1                              0
  STAGE X                               2                             11
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              T1  T2  T3  T4
  AMP PEAK 25(17Q23.1) MUTATED    80 272  47  18
  AMP PEAK 25(17Q23.1) WILD-TYPE 192 344  83  22
D25V4, multiclass
    clus
vv   AMP PEAK 25(17Q23.1) MUTATED AMP PEAK 25(17Q23.1) WILD-TYPE
  T1                           80                            192
  T2                          272                            344
  T3                           47                             83
  T4                           18                             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              N0  N1  N2  N3
  AMP PEAK 25(17Q23.1) MUTATED   193 141  53  24
  AMP PEAK 25(17Q23.1) WILD-TYPE 308 209  64  51
D25V5, multiclass
    clus
vv   AMP PEAK 25(17Q23.1) MUTATED AMP PEAK 25(17Q23.1) WILD-TYPE
  N0                          193                            308
  N1                          141                            209
  N2                           53                             64
  N3                           24                             51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D25V6, binary
                                cls
clus                               0   1
  AMP PEAK 25(17Q23.1) MUTATED   369   9
  AMP PEAK 25(17Q23.1) WILD-TYPE 510  12
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 25(17Q23.1) MUTATED    369    9
  AMP PEAK 25(17Q23.1) WILD-TYPE  510   12
   clus
vv  AMP PEAK 25(17Q23.1) MUTATED AMP PEAK 25(17Q23.1) WILD-TYPE
  0                          369                            510
  1                            9                             12
[1] 2 2
[1] FALSE
D25V7, binary
                                cls
clus                               0   1
  AMP PEAK 25(17Q23.1) MUTATED   408  11
  AMP PEAK 25(17Q23.1) WILD-TYPE 643   0
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 25(17Q23.1) MUTATED    408   11
  AMP PEAK 25(17Q23.1) WILD-TYPE  643    0
        clus
vv       AMP PEAK 25(17Q23.1) MUTATED AMP PEAK 25(17Q23.1) WILD-TYPE
  FEMALE                          408                            643
  MALE                             11                              0
[1] 2 2
[1] FALSE
                                vv
clus                             INFILTRATING CARCINOMA NOS
  AMP PEAK 25(17Q23.1) MUTATED                            1
  AMP PEAK 25(17Q23.1) WILD-TYPE                          0
                                vv
clus                             INFILTRATING DUCTAL CARCINOMA
  AMP PEAK 25(17Q23.1) MUTATED                             337
  AMP PEAK 25(17Q23.1) WILD-TYPE                           426
                                vv
clus                             INFILTRATING LOBULAR CARCINOMA
  AMP PEAK 25(17Q23.1) MUTATED                               41
  AMP PEAK 25(17Q23.1) WILD-TYPE                            151
                                vv
clus                             MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  AMP PEAK 25(17Q23.1) MUTATED                     3                     2
  AMP PEAK 25(17Q23.1) WILD-TYPE                   3                     2
                                vv
clus                             MIXED HISTOLOGY (PLEASE SPECIFY)
  AMP PEAK 25(17Q23.1) MUTATED                                 11
  AMP PEAK 25(17Q23.1) WILD-TYPE                               19
                                vv
clus                             MUCINOUS CARCINOMA OTHER  SPECIFY
  AMP PEAK 25(17Q23.1) MUTATED                    5             18
  AMP PEAK 25(17Q23.1) WILD-TYPE                 12             30
D25V8, multiclass
                                  clus
vv                                 AMP PEAK 25(17Q23.1) MUTATED
  INFILTRATING CARCINOMA NOS                                  1
  INFILTRATING DUCTAL CARCINOMA                             337
  INFILTRATING LOBULAR CARCINOMA                             41
  MEDULLARY CARCINOMA                                         3
  METAPLASTIC CARCINOMA                                       2
  MIXED HISTOLOGY (PLEASE SPECIFY)                           11
  MUCINOUS CARCINOMA                                          5
  OTHER  SPECIFY                                             18
                                  clus
vv                                 AMP PEAK 25(17Q23.1) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                    0
  INFILTRATING DUCTAL CARCINOMA                               426
  INFILTRATING LOBULAR CARCINOMA                              151
  MEDULLARY CARCINOMA                                           3
  METAPLASTIC CARCINOMA                                         2
  MIXED HISTOLOGY (PLEASE SPECIFY)                             19
  MUCINOUS CARCINOMA                                           12
  OTHER  SPECIFY                                               30
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D25V9, binary
                                cls
clus                               0   1
  AMP PEAK 25(17Q23.1) MUTATED   116 303
  AMP PEAK 25(17Q23.1) WILD-TYPE 172 471
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 25(17Q23.1) MUTATED    116  303
  AMP PEAK 25(17Q23.1) WILD-TYPE  172  471
     clus
vv    AMP PEAK 25(17Q23.1) MUTATED AMP PEAK 25(17Q23.1) WILD-TYPE
  NO                           116                            172
  YES                          303                            471
[1] 2 2
[1] FALSE
D25V10, continuous
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK 25(17Q23.1) MUTATED                                  0    29
  AMP PEAK 25(17Q23.1) WILD-TYPE                                1    31
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 25(17Q23.1) MUTATED                          70   269
  AMP PEAK 25(17Q23.1) WILD-TYPE                       100   467
D25V11, multiclass
                                  clus
vv                                 AMP PEAK 25(17Q23.1) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            0
  ASIAN                                                      29
  BLACK OR AFRICAN AMERICAN                                  70
  WHITE                                                     269
                                  clus
vv                                 AMP PEAK 25(17Q23.1) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              1
  ASIAN                                                        31
  BLACK OR AFRICAN AMERICAN                                   100
  WHITE                                                       467
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D25V12, binary
                                cls
clus                               0   1
  AMP PEAK 25(17Q23.1) MUTATED    15 329
  AMP PEAK 25(17Q23.1) WILD-TYPE  23 529
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 25(17Q23.1) MUTATED     15  329
  AMP PEAK 25(17Q23.1) WILD-TYPE   23  529
                        clus
vv                       AMP PEAK 25(17Q23.1) MUTATED
  HISPANIC OR LATINO                               15
  NOT HISPANIC OR LATINO                          329
                        clus
vv                       AMP PEAK 25(17Q23.1) WILD-TYPE
  HISPANIC OR LATINO                                 23
  NOT HISPANIC OR LATINO                            529
[1] 2 2
[1] FALSE

Clustering(26) Variable = AMP PEAK 26(19P13.12) MUTATION ANALYSIS
D26V1, survival
                                 sevent
clus2                               0   1
  AMP PEAK 26(19P13.12) MUTATED   203  24
  AMP PEAK 26(19P13.12) WILD-TYPE 713 104
  AMP PEAK 26(19P13.12) MUTATED AMP PEAK 26(19P13.12) WILD-TYPE 
                            227                             817 
  AMP PEAK 26(19P13.12) MUTATED AMP PEAK 26(19P13.12) WILD-TYPE 
                             24                             104 
$`AMP PEAK 26(19P13.12) MUTATED`
TCGA-4H-AAAK TCGA-A1-A0SF TCGA-A1-A0SK TCGA-A2-A04P TCGA-A2-A04Q TCGA-A2-A04U 
       11.44        48.10        31.79        18.02        78.41        87.25 
TCGA-A2-A0CT TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0EQ TCGA-A2-A0ET TCGA-A2-A0EU 
       75.25        34.55        33.76        79.76        35.05        34.29 
TCGA-A2-A0EY TCGA-A2-A0SX TCGA-A2-A0T0 TCGA-A2-A0T3 TCGA-A2-A0T6 TCGA-A2-A0YH 
       63.29        50.43        17.52        49.84        18.90        21.67 
TCGA-A2-A0YJ TCGA-A2-A1G0 TCGA-A2-A1G1 TCGA-A2-A3XT TCGA-A2-A3XU TCGA-A2-A3Y0 
       18.61        20.25        19.20        83.01        29.98        38.37 
TCGA-A2-A4S2 TCGA-A7-A0CD TCGA-A7-A0CE TCGA-A7-A0CJ TCGA-A7-A0DA TCGA-A7-A0DB 
       21.14        38.30        35.31        30.61        35.67        33.11 
TCGA-A7-A0DC TCGA-A7-A13E TCGA-A7-A26E TCGA-A7-A2KD TCGA-A7-A3J0 TCGA-A7-A4SE 
       29.79        20.19        31.36        22.32        10.29        21.17 
TCGA-A7-A5ZV TCGA-A8-A06Q TCGA-A8-A06R TCGA-A8-A06X TCGA-A8-A085 TCGA-A8-A08F 
       12.10         1.02        17.98        31.00        36.95        33.01 
TCGA-A8-A08R TCGA-A8-A08X TCGA-A8-A093 TCGA-A8-A097 TCGA-A8-A09B TCGA-A8-A09E 
        0.99        43.00        17.95        12.00        12.00        49.05 
TCGA-A8-A09M TCGA-A8-A0A6 TCGA-A8-A0A9 TCGA-AC-A23E TCGA-AC-A23G TCGA-AC-A2BK 
       33.07        21.04        27.02         2.37        10.85        38.53 
TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A3OD TCGA-AC-A3W5 TCGA-AC-A62Y TCGA-AC-A6IW 
       26.04        50.70        14.83        16.57        17.42        13.58 
TCGA-AC-A8OP TCGA-AN-A03Y TCGA-AN-A0AJ TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0FD 
       20.19         0.33         9.96         0.16         0.33         6.44 
TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FX TCGA-AN-A0XN TCGA-AN-A0XT TCGA-AN-A0XW 
        7.00         7.59         0.33         0.33         0.33         5.59 
TCGA-AO-A03L TCGA-AO-A03P TCGA-AO-A0J4 TCGA-AO-A0J7 TCGA-AO-A0JL TCGA-AO-A124 
       80.28        95.70        52.18        20.32        55.33       102.58 
TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A1KR TCGA-AO-A1KS TCGA-AQ-A54N 
       90.58        98.27        64.04        70.39         0.53         2.56 
TCGA-AQ-A54O TCGA-AR-A0TP TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A1AJ TCGA-AR-A1AK 
       32.91       111.32        65.36       101.95        52.77        51.25 
TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A24K TCGA-AR-A24Q TCGA-AR-A24S 
       61.28        63.62        62.14        50.89       104.28        97.84 
TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A24Z TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LQ 
       85.35        50.96        79.00        58.92        93.83        40.54 
TCGA-AR-A2LR TCGA-AR-A5QM TCGA-B6-A0I2 TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IQ 
       20.38        54.74       143.38       112.37       176.98       140.88 
TCGA-B6-A0RU TCGA-B6-A0WX TCGA-B6-A0WY TCGA-B6-A0WZ TCGA-B6-A1KC TCGA-B6-A1KI 
      131.21        21.47       113.79       129.57        43.59        73.51 
TCGA-B6-A401 TCGA-B6-A402 TCGA-BH-A0AU TCGA-BH-A0B6 TCGA-BH-A0B9 TCGA-BH-A0BA 
       85.35        74.99        24.53        56.94        51.68        37.22 
TCGA-BH-A0BJ TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DO 
       21.70        41.75        44.02        42.90        45.83        17.26 
TCGA-BH-A0E9 TCGA-BH-A0H0 TCGA-BH-A0HQ TCGA-BH-A18N TCGA-BH-A18Q TCGA-BH-A18T 
       46.19        15.16        36.85        37.74        55.63         7.36 
TCGA-BH-A18V TCGA-BH-A1EO TCGA-BH-A1FC TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A5IZ 
       51.16        91.99       114.15        57.83       130.16        18.64 
TCGA-BH-A6R9 TCGA-BH-A8FZ TCGA-C8-A12L TCGA-C8-A12Q TCGA-C8-A12V TCGA-C8-A12Z 
        5.26        18.87        11.93        12.66        12.66         0.39 
TCGA-C8-A130 TCGA-C8-A27B TCGA-D8-A13Z TCGA-D8-A140 TCGA-D8-A143 TCGA-D8-A145 
        3.16         0.99        20.88        13.25        14.17        13.48 
TCGA-D8-A147 TCGA-D8-A1J8 TCGA-D8-A1JF TCGA-D8-A1JH TCGA-D8-A1JN TCGA-D8-A1X6 
       19.20        14.17        12.03        14.01        20.38        17.79 
TCGA-D8-A1XJ TCGA-D8-A1XU TCGA-D8-A1XZ TCGA-D8-A1Y2 TCGA-D8-A27W TCGA-E2-A10B 
       21.83        12.99        15.32        14.24        12.26        37.51 
TCGA-E2-A14N TCGA-E2-A14R TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A150 TCGA-E2-A153 
       47.15        38.60        31.96        28.60        25.41        23.24 
TCGA-E2-A15E TCGA-E2-A15M TCGA-E2-A1B1 TCGA-E2-A1IH TCGA-E2-A1II TCGA-E2-A1LE 
       20.71        11.05        53.03        33.73        33.70        28.90 
TCGA-E2-A1LG TCGA-E2-A574 TCGA-E2-A576 TCGA-E2-A9RU TCGA-E9-A1N8 TCGA-E9-A1N9 
       18.87        26.56        34.29        12.85        12.00        13.12 
TCGA-E9-A1NA TCGA-E9-A1NF TCGA-E9-A1R6 TCGA-E9-A1RA TCGA-E9-A1RD TCGA-E9-A1RH 
       36.56        35.24         2.76        32.09         1.12        34.59 
TCGA-E9-A22B TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A243 TCGA-E9-A244 TCGA-E9-A248 
       22.75        12.89        23.51        17.06         0.69         1.94 
TCGA-E9-A249 TCGA-E9-A295 TCGA-E9-A3QA TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UP 
        7.13         0.72        30.18        14.70         0.79        14.40 
TCGA-EW-A1J6 TCGA-EW-A1OY TCGA-EW-A1P4 TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A1PD 
       28.77        29.85        29.82        19.99         6.15        13.94 
TCGA-EW-A2FR TCGA-EW-A423 TCGA-GI-A2C9 TCGA-GM-A2DD TCGA-HN-A2NL TCGA-LD-A7W6 
       55.00        10.16       109.87        75.02         2.60        13.28 
TCGA-LL-A440 TCGA-LL-A5YN TCGA-LL-A6FQ TCGA-LL-A73Y TCGA-LL-A8F5 TCGA-LL-A9Q3 
       24.95        14.70         2.63        15.68        14.73        14.07 
TCGA-MS-A51U TCGA-OL-A5RW TCGA-OL-A97C TCGA-PL-A8LZ TCGA-S3-A6ZG TCGA-S3-AA0Z 
       22.39        36.36         8.91         9.93        13.12        16.80 
TCGA-S3-AA10 TCGA-UU-A93S TCGA-W8-A86G TCGA-WT-AB41 TCGA-XX-A89A 
       15.39         3.81        11.41        52.96        16.04 

$`AMP PEAK 26(19P13.12) WILD-TYPE`
TCGA-3C-AAAU TCGA-3C-AALI TCGA-3C-AALJ TCGA-3C-AALK TCGA-5L-AAT0 TCGA-5L-AAT1 
      129.14       131.67        42.81        40.14        48.56        48.36 
TCGA-5T-A9QA TCGA-A1-A0SB TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SG TCGA-A1-A0SH 
        9.96         8.52        14.37        43.43        14.27        47.24 
TCGA-A1-A0SI TCGA-A1-A0SJ TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SO TCGA-A1-A0SP 
       20.88        13.68         7.96        39.32        28.01        19.20 
TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04V TCGA-A2-A04W 
       18.21       104.81       121.94        73.84        63.12       101.98 
TCGA-A2-A04X TCGA-A2-A04Y TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO 
       55.43        36.13       136.73        99.12        24.79       114.81 
TCGA-A2-A0CP TCGA-A2-A0CQ TCGA-A2-A0CR TCGA-A2-A0CS TCGA-A2-A0CU TCGA-A2-A0CV 
       92.48        88.60       107.93        75.55         5.19        98.99 
TCGA-A2-A0CW TCGA-A2-A0CX TCGA-A2-A0D0 TCGA-A2-A0D3 TCGA-A2-A0D4 TCGA-A2-A0EM 
      107.93        56.81        67.33        61.58        25.22       101.72 
TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0ER TCGA-A2-A0ES TCGA-A2-A0EV 
      134.40        80.28       107.61        74.40        72.00        31.82 
TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW 
       61.94        24.72        99.19        54.64        27.12        44.88 
TCGA-A2-A0SY TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T4 TCGA-A2-A0T5 TCGA-A2-A0T7 
       44.28        17.13         8.38        20.52        17.46        20.75 
TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YE TCGA-A2-A0YF TCGA-A2-A0YG TCGA-A2-A0YI 
       32.55        25.28        18.21        50.47        21.90        49.48 
TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A0YM TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FW 
       19.33        48.46        31.73        23.77        23.47        17.36 
TCGA-A2-A1FX TCGA-A2-A1FZ TCGA-A2-A1G4 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25A 
       60.72        22.45        19.56        16.47        52.47       107.70 
TCGA-A2-A25B TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC 
       42.44        17.19        18.15       105.34        10.59        20.88 
TCGA-A2-A3KD TCGA-A2-A3XS TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX TCGA-A2-A3XY 
       39.65        33.93        32.75        49.48        47.31        34.98 
TCGA-A2-A3XZ TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S1 
       50.37         7.30        24.39        21.30        23.21        26.96 
TCGA-A2-A4S3 TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0D9 TCGA-A7-A13D TCGA-A7-A13F 
       21.90        34.29        35.47        37.45        31.73        25.15 
TCGA-A7-A13G TCGA-A7-A13H TCGA-A7-A26F TCGA-A7-A26G TCGA-A7-A26H TCGA-A7-A26I 
       23.61        29.56        24.26        23.74        23.80        21.73 
TCGA-A7-A26J TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J1 TCGA-A7-A3RF TCGA-A7-A425 
       20.61        11.34        10.59        11.28        13.41        14.70 
TCGA-A7-A426 TCGA-A7-A4SA TCGA-A7-A4SB TCGA-A7-A4SD TCGA-A7-A4SF TCGA-A7-A56D 
       11.97        14.93        13.74        14.50        17.92        14.73 
TCGA-A7-A5ZW TCGA-A7-A5ZX TCGA-A7-A6VV TCGA-A7-A6VW TCGA-A7-A6VX TCGA-A7-A6VY 
       10.72        11.05        10.29         9.37        10.42         8.75 
TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06T TCGA-A8-A06U TCGA-A8-A06Y TCGA-A8-A06Z 
       13.02        13.02        53.06        29.03        26.01         1.02 
TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A079 TCGA-A8-A07B TCGA-A8-A07E TCGA-A8-A07F 
       17.03        53.98         9.01        43.00        19.99        18.97 
TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07L TCGA-A8-A07O TCGA-A8-A07P 
       18.97        14.01        12.00        32.05         9.99        10.98 
TCGA-A8-A07R TCGA-A8-A07S TCGA-A8-A07U TCGA-A8-A07W TCGA-A8-A07Z TCGA-A8-A082 
        8.98         7.99        24.99         9.99        45.07        18.05 
TCGA-A8-A084 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08B TCGA-A8-A08C TCGA-A8-A08G 
       15.06        13.02         0.99        38.01        28.96        19.96 
TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08O TCGA-A8-A08P TCGA-A8-A08S 
       12.00        37.05         9.99        31.00        31.00        33.01 
TCGA-A8-A08T TCGA-A8-A08Z TCGA-A8-A091 TCGA-A8-A092 TCGA-A8-A095 TCGA-A8-A099 
      112.08        40.01        33.01        30.97        41.98         9.99 
TCGA-A8-A09A TCGA-A8-A09C TCGA-A8-A09D TCGA-A8-A09I TCGA-A8-A09K TCGA-A8-A09N 
        9.99         1.02        50.04        45.07        29.98         1.02 
TCGA-A8-A09Q TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A09X 
       25.02         8.98        19.04        15.02         0.99        14.01 
TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A7 TCGA-A8-A0AB TCGA-A8-A0AD 
       12.00        19.04        13.02         0.99        17.03        38.04 
TCGA-AC-A23C TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FF 
        0.95         5.72         1.48        99.35        40.57        55.43 
TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2QH TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3BB 
       36.99        38.79        33.04         0.92         2.27        32.45 
TCGA-AC-A3HN TCGA-AC-A3QP TCGA-AC-A3TN TCGA-AC-A3W6 TCGA-AC-A3YI TCGA-AC-A3YJ 
       16.31        22.19        14.99        19.79        23.24        24.79 
TCGA-AC-A5XS TCGA-AC-A62V TCGA-AC-A62X TCGA-AC-A6IV TCGA-AC-A6IX TCGA-AC-A6NO 
        1.55        11.44        13.71        18.67        12.26         1.68 
TCGA-AC-A7VB TCGA-AC-A7VC TCGA-AC-A8OQ TCGA-AC-A8OR TCGA-AC-A8OS TCGA-AN-A03X 
        8.22         0.03         1.12         1.32         2.30         0.33 
TCGA-AN-A041 TCGA-AN-A046 TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A04D 
        0.23         0.33         0.62         2.96         1.78         1.71 
TCGA-AN-A0AK TCGA-AN-A0AL TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FF TCGA-AN-A0FJ 
        7.36         6.51         0.33         0.33         5.65         7.96 
TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FY 
        7.17         6.28         7.04         0.33         0.36         0.33 
TCGA-AN-A0FZ TCGA-AN-A0XL TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS 
        0.33         0.33        12.33         0.30         0.33         0.33 
TCGA-AN-A0XU TCGA-AN-A0XV TCGA-AO-A03M TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03R 
        0.33         5.33        61.35        66.77        81.63        68.75 
TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J5 
       47.87        58.95        29.13        32.78        21.40        26.04 
TCGA-AO-A0J6 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JC 
       37.48        22.36        53.03        21.53        50.70        50.86 
TCGA-AO-A0JD TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JG TCGA-AO-A0JI TCGA-AO-A0JJ 
       72.00        76.77        21.37        26.24        50.24        62.04 
TCGA-AO-A0JM TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 TCGA-AO-A129 TCGA-AO-A12E 
       71.80        99.25       108.72       106.78       108.03        57.30 
TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KQ 
       48.36        41.62        28.37        14.73        82.62        61.87 
TCGA-AO-A1KT TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A0Y5 TCGA-AQ-A1H2 
       17.79        24.79        26.93       130.09         5.65        15.62 
TCGA-AQ-A1H3 TCGA-AQ-A7U7 TCGA-AR-A0TQ TCGA-AR-A0TR TCGA-AR-A0TS TCGA-AR-A0TT 
       32.52        19.20        73.64         5.26        74.79        86.66 
TCGA-AR-A0TV TCGA-AR-A0TW TCGA-AR-A0TX TCGA-AR-A0TY TCGA-AR-A0TZ TCGA-AR-A0U2 
       42.35        98.93        64.83        55.86       107.24        83.87 
TCGA-AR-A0U3 TCGA-AR-A0U4 TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AL TCGA-AR-A1AM 
      114.02        85.97        75.55        61.84        48.82        76.11 
TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AQ TCGA-AR-A1AR TCGA-AR-A1AS 
       43.73        43.56        39.98        43.07        17.23        37.81 
TCGA-AR-A1AU TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24N 
       76.21        33.73       160.90        94.22        96.89        78.51 
TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24R TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24X 
       84.20         2.76        87.22        76.01        53.36        83.77 
TCGA-AR-A250 TCGA-AR-A251 TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A2LE TCGA-AR-A2LH 
       89.00        78.48        73.18        72.76       143.21        20.25 
TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LL TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO 
       62.86        54.21        66.15        52.11        38.17        39.39 
TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I5 TCGA-B6-A0I9 
       16.04        20.45        10.59        77.62       149.59        12.13 
TCGA-B6-A0IA TCGA-B6-A0IB TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IK 
      220.90       129.57        50.70        65.72       146.50        18.77 
TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IO TCGA-B6-A0IP TCGA-B6-A0RE TCGA-B6-A0RG 
      126.12        84.59       110.14       110.93       211.56        68.45 
TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RL TCGA-B6-A0RM TCGA-B6-A0RN TCGA-B6-A0RO 
      189.01       234.28        81.17        78.02       172.96       162.05 
TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RS TCGA-B6-A0RT TCGA-B6-A0RV TCGA-B6-A0WS 
      102.77       140.48       100.70        89.46       157.41        97.48 
TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 
      188.68        79.63        18.35       129.70       186.48        28.27 
TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KF TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A408 
       68.94        58.88       101.52       139.17       170.17        68.12 
TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AV TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0AZ 
      103.63        71.15        59.84        20.45        25.55        28.50 
TCGA-BH-A0B0 TCGA-BH-A0B2 TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0B7 
       46.95        40.83        39.55        39.16        48.36        56.98 
TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BF TCGA-BH-A0BG TCGA-BH-A0BL TCGA-BH-A0BM 
       32.02        18.21        25.71        24.85        44.05        61.68 
TCGA-BH-A0BO TCGA-BH-A0BP TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BT 
       35.67        48.69        27.19        53.69        53.95        45.57 
TCGA-BH-A0BV TCGA-BH-A0BW TCGA-BH-A0BZ TCGA-BH-A0C3 TCGA-BH-A0DE TCGA-BH-A0DG 
       49.94        11.67        49.05        48.13        31.17        23.44 
TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DP TCGA-BH-A0DQ 
       38.01        22.13        13.91        48.23        15.65         3.22 
TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E0 
        2.56        38.47        67.86        47.41        16.27         4.41 
TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E6 TCGA-BH-A0E7 TCGA-BH-A0EA TCGA-BH-A0EB 
       15.68        14.30         9.63        44.81        32.58        24.49 
TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H3 TCGA-BH-A0H5 
       31.00        24.43        30.35        10.78        37.78        35.51 
TCGA-BH-A0H6 TCGA-BH-A0H7 TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HI 
       24.56        23.08        41.00        52.96        26.50        20.38 
TCGA-BH-A0HK TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HX 
        5.85         2.50        13.61        12.89        51.32        27.25 
TCGA-BH-A0HY TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 
       50.79         5.59        23.93        24.95        42.35        44.81 
TCGA-BH-A0WA TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18K 
       23.05         8.81         2.01         7.23        20.12        90.84 
TCGA-BH-A18L TCGA-BH-A18M TCGA-BH-A18P TCGA-BH-A18R TCGA-BH-A18S TCGA-BH-A18U 
       26.66        72.56        30.28        37.55        66.05        51.39 
TCGA-BH-A1EN TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EW 
       69.93       113.82        82.85        42.28        12.00        55.69 
TCGA-BH-A1EX TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F2 TCGA-BH-A1F5 TCGA-BH-A1F6 
       49.58        17.69        25.81        31.53        89.16        97.48 
TCGA-BH-A1F8 TCGA-BH-A1FB TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH 
       24.66       120.62        33.17        74.73       122.89        36.92 
TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FM TCGA-BH-A1FN TCGA-BH-A1FR TCGA-BH-A1FU 
       63.35        55.00        45.63        72.07       144.59        72.07 
TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A203 TCGA-BH-A204 TCGA-BH-A28O TCGA-BH-A28Q 
       28.14        26.14        38.60        83.31        10.65         6.44 
TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5J0 TCGA-BH-A6R8 
       20.12        10.52       109.28         8.94        23.51         9.63 
TCGA-BH-A8FY TCGA-BH-A8G0 TCGA-BH-AB28 TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12O 
        9.70        21.76         9.44        11.77        11.77        12.66 
TCGA-C8-A12P TCGA-C8-A12U TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A131 TCGA-C8-A132 
       11.77        12.66        12.66        12.66         2.24         1.87 
TCGA-C8-A134 TCGA-C8-A135 TCGA-C8-A137 TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HF 
        1.12         1.05         4.11         4.08        12.33        10.92 
TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HL TCGA-C8-A1HM 
       11.34        11.28         0.16        12.03        10.42         2.30 
TCGA-C8-A1HN TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A26X TCGA-C8-A26Y TCGA-C8-A26Z 
        3.25         0.30         0.23         0.36         0.43         8.28 
TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A3M7 
        9.67         9.53         0.03         9.50        12.20         0.03 
TCGA-C8-A3M8 TCGA-C8-A8HP TCGA-C8-A8HQ TCGA-C8-A8HR TCGA-C8-A9FZ TCGA-D8-A13Y 
        0.23        13.02        12.49        13.41        19.46        11.90 
TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A146 TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JB 
       20.58        13.97        21.14        17.49        16.50        18.71 
TCGA-D8-A1JC TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JG TCGA-D8-A1JI TCGA-D8-A1JJ 
       15.78        18.15        18.90        12.03        18.97        20.09 
TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JP TCGA-D8-A1JS TCGA-D8-A1JT 
       20.12        20.09        19.40        21.01        12.20        13.32 
TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XA 
       14.70        18.58        16.73        25.74        23.90        27.58 
TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XD TCGA-D8-A1XF TCGA-D8-A1XG TCGA-D8-A1XK 
       18.15        12.39        17.16        15.22        14.73        14.50 
TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XQ TCGA-D8-A1XR TCGA-D8-A1XS 
       19.92        17.69        15.55        16.41        15.85        16.31 
TCGA-D8-A1XT TCGA-D8-A1XV TCGA-D8-A1XW TCGA-D8-A1XY TCGA-D8-A1Y0 TCGA-D8-A1Y1 
        6.35        15.16        12.66        16.54        15.52         9.93 
TCGA-D8-A1Y3 TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27I 
       14.14        17.42        16.04        13.45        13.05        14.43 
TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27R 
        9.44        16.41        13.48         4.80         0.76        10.09 
TCGA-D8-A27T TCGA-D8-A27V TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-D8-A73U 
       13.08        12.53        33.37        18.51        21.67        16.18 
TCGA-D8-A73W TCGA-D8-A73X TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A109 
        8.02        12.10        43.00        34.42        27.52        46.59 
TCGA-E2-A10A TCGA-E2-A10C TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14O TCGA-E2-A14P 
       40.41        40.11        28.44        28.87        44.68        40.96 
TCGA-E2-A14Q TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14W 
       38.24        33.17        33.30        43.33        34.26        32.02 
TCGA-E2-A14Z TCGA-E2-A152 TCGA-E2-A154 TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A158 
       18.51        27.12        19.43        21.04        23.87        14.79 
TCGA-E2-A159 TCGA-E2-A15A TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15F TCGA-E2-A15G 
       25.05        23.34        22.82        17.29        21.63        18.21 
TCGA-E2-A15H TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15O 
       12.92        17.42        19.40         9.04        20.58        13.02 
TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B0 
       19.56        17.06        14.07        14.99        60.53        53.62 
TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BC TCGA-E2-A1BD TCGA-E2-A1IE 
       33.01        32.35        28.50        16.47        17.10        38.30 
TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN 
       37.41        32.78        28.44        22.65         3.88        22.19 
TCGA-E2-A1IO TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L8 TCGA-E2-A1L9 
       20.98        11.08        54.18        27.42        39.62        19.66 
TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A1LL 
       24.59        40.47       106.75       102.61         8.75        43.04 
TCGA-E2-A2P5 TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A573 
       16.93         5.52        15.72         8.28        30.61        34.92 
TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N6 TCGA-E9-A1NC TCGA-E9-A1ND 
       34.82        32.88        36.82        13.48        39.55        12.59 
TCGA-E9-A1NE TCGA-E9-A1NG TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 
       35.77        25.84         9.86        11.90        28.27        34.95 
TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R7 TCGA-E9-A1RB TCGA-E9-A1RC 
        2.56         6.12         3.02        21.21        32.09        40.24 
TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RG TCGA-E9-A1RI TCGA-E9-A226 TCGA-E9-A227 
       34.65         6.58        21.27        35.64        34.13        32.05 
TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22D TCGA-E9-A22H TCGA-E9-A247 
       12.53        13.32        39.09        41.03        20.71        27.22 
TCGA-E9-A24A TCGA-E9-A2JS TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3X8 
       24.56        29.72         0.76        26.07        18.41        15.72 
TCGA-E9-A54X TCGA-E9-A54Y TCGA-E9-A5UO TCGA-E9-A6HE TCGA-EW-A1IW TCGA-EW-A1IX 
       12.33        23.84        13.81        15.39        12.20        39.72 
TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J5 
        8.48        18.21        18.90        13.25        16.57        15.68 
TCGA-EW-A1OV TCGA-EW-A1OW TCGA-EW-A1OX TCGA-EW-A1OZ TCGA-EW-A1P0 TCGA-EW-A1P1 
       25.94        22.82        29.95        40.41        41.13        39.78 
TCGA-EW-A1P3 TCGA-EW-A1P5 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1P8 TCGA-EW-A1PA 
       52.96        23.11        18.48        30.08         7.86        18.90 
TCGA-EW-A1PE TCGA-EW-A1PF TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FS TCGA-EW-A2FV 
       10.52        14.43        34.55        19.96        52.73        25.91 
TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A3U0 TCGA-EW-A424 TCGA-GI-A2C8 TCGA-GM-A2D9 
       22.09        34.03        17.49        23.51         7.40        59.57 
TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DC TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A2DI 
      216.76        79.10        83.34        70.85        72.10        85.15 
TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A2DO TCGA-GM-A3NW 
       86.96       115.69       106.06       101.62        85.35       110.50 
TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XL TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV 
       38.20        43.73        69.30        66.38        72.03        13.55 
TCGA-GM-A5PX TCGA-HN-A2OB TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LD-A66U TCGA-LD-A74U 
       18.12        62.43        11.84        11.57        21.24        13.22 
TCGA-LD-A7W5 TCGA-LD-A9QF TCGA-LL-A441 TCGA-LL-A442 TCGA-LL-A50Y TCGA-LL-A5YL 
        7.10        10.62        11.44        10.95        25.05        17.06 
TCGA-LL-A5YM TCGA-LL-A5YO TCGA-LL-A5YP TCGA-LL-A6FP TCGA-LL-A6FR TCGA-LL-A73Z 
       15.32        14.47        14.79        22.26        16.08         7.46 
TCGA-LL-A740 TCGA-LL-A7SZ TCGA-LL-A7T0 TCGA-LQ-A4E4 TCGA-OK-A5Q2 TCGA-OL-A5D6 
       14.50        14.70        12.36        27.91         2.10        36.30 
TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RU TCGA-OL-A5RV TCGA-OL-A5RX 
       58.52        31.99        58.62        40.08        34.92        28.87 
TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J 
       24.72        22.32        20.38        26.70        23.47        65.62 
TCGA-OL-A66K TCGA-OL-A66L TCGA-OL-A66N TCGA-OL-A66O TCGA-OL-A66P TCGA-OL-A6VO 
       41.92        42.77        26.04        17.36        14.07        28.21 
TCGA-OL-A6VQ TCGA-OL-A6VR TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE TCGA-PL-A8LX 
       19.73        40.11        47.01        64.21        86.96         0.16 
TCGA-PL-A8LY TCGA-S3-A6ZF TCGA-S3-A6ZH TCGA-S3-AA11 TCGA-S3-AA12 TCGA-S3-AA14 
        0.26        16.50        16.93        13.84        15.35        14.96 
TCGA-S3-AA15 TCGA-S3-AA17 TCGA-UL-AAZ6 TCGA-WT-AB44 TCGA-XX-A899 TCGA-Z7-A8R5 
       13.84        13.94        17.03        29.03        15.35       108.07 
TCGA-Z7-A8R6 
      107.05 

  AMP PEAK 26(19P13.12) MUTATED AMP PEAK 26(19P13.12) WILD-TYPE 
                           0.16                            0.03 
  AMP PEAK 26(19P13.12) MUTATED AMP PEAK 26(19P13.12) WILD-TYPE 
                         176.98                          234.28 
  AMP PEAK 26(19P13.12) MUTATED AMP PEAK 26(19P13.12) WILD-TYPE 
                          24.95                           24.49 
[1] "0.2 - 177.0 (24.9)" "0.0 - 234.3 (24.5)"
[1] "hr=" "1.1"
D26V2, continuous
                                 vv
clus                              STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  AMP PEAK 26(19P13.12) MUTATED        16       18        1        0        86
  AMP PEAK 26(19P13.12) WILD-TYPE      73       63        7        3       267
                                 vv
clus                              STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  AMP PEAK 26(19P13.12) MUTATED          57         0         29          5
  AMP PEAK 26(19P13.12) WILD-TYPE       188         2        121         24
                                 vv
clus                              STAGE IIIC STAGE IV STAGE TIS STAGE X
  AMP PEAK 26(19P13.12) MUTATED           12        1         0       0
  AMP PEAK 26(19P13.12) WILD-TYPE         51       19         1      13
D26V3, multiclass
            clus
vv           AMP PEAK 26(19P13.12) MUTATED AMP PEAK 26(19P13.12) WILD-TYPE
  STAGE I                               16                              73
  STAGE IA                              18                              63
  STAGE IB                               1                               7
  STAGE II                               0                               3
  STAGE IIA                             86                             267
  STAGE IIB                             57                             188
  STAGE III                              0                               2
  STAGE IIIA                            29                             121
  STAGE IIIB                             5                              24
  STAGE IIIC                            12                              51
  STAGE IV                               1                              19
  STAGE TIS                              0                               1
  STAGE X                                0                              13
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                               T1  T2  T3  T4
  AMP PEAK 26(19P13.12) MUTATED    50 141  29   7
  AMP PEAK 26(19P13.12) WILD-TYPE 222 475 101  33
D26V4, multiclass
    clus
vv   AMP PEAK 26(19P13.12) MUTATED AMP PEAK 26(19P13.12) WILD-TYPE
  T1                            50                             222
  T2                           141                             475
  T3                            29                             101
  T4                             7                              33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                               N0  N1  N2  N3
  AMP PEAK 26(19P13.12) MUTATED   123  67  24  13
  AMP PEAK 26(19P13.12) WILD-TYPE 378 283  93  62
D26V5, multiclass
    clus
vv   AMP PEAK 26(19P13.12) MUTATED AMP PEAK 26(19P13.12) WILD-TYPE
  N0                           123                             378
  N1                            67                             283
  N2                            24                              93
  N3                            13                              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D26V6, binary
                                 cls
clus                                0   1
  AMP PEAK 26(19P13.12) MUTATED   191   1
  AMP PEAK 26(19P13.12) WILD-TYPE 688  20
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 26(19P13.12) MUTATED    191    1
  AMP PEAK 26(19P13.12) WILD-TYPE  688   20
   clus
vv  AMP PEAK 26(19P13.12) MUTATED AMP PEAK 26(19P13.12) WILD-TYPE
  0                           191                             688
  1                             1                              20
[1] 2 2
[1] FALSE
D26V7, binary
                                 cls
clus                                0   1
  AMP PEAK 26(19P13.12) MUTATED   222   5
  AMP PEAK 26(19P13.12) WILD-TYPE 829   6
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 26(19P13.12) MUTATED    222    5
  AMP PEAK 26(19P13.12) WILD-TYPE  829    6
        clus
vv       AMP PEAK 26(19P13.12) MUTATED AMP PEAK 26(19P13.12) WILD-TYPE
  FEMALE                           222                             829
  MALE                               5                               6
[1] 2 2
[1] FALSE
                                 vv
clus                              INFILTRATING CARCINOMA NOS
  AMP PEAK 26(19P13.12) MUTATED                            1
  AMP PEAK 26(19P13.12) WILD-TYPE                          0
                                 vv
clus                              INFILTRATING DUCTAL CARCINOMA
  AMP PEAK 26(19P13.12) MUTATED                             167
  AMP PEAK 26(19P13.12) WILD-TYPE                           596
                                 vv
clus                              INFILTRATING LOBULAR CARCINOMA
  AMP PEAK 26(19P13.12) MUTATED                               33
  AMP PEAK 26(19P13.12) WILD-TYPE                            159
                                 vv
clus                              MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  AMP PEAK 26(19P13.12) MUTATED                     4                     2
  AMP PEAK 26(19P13.12) WILD-TYPE                   2                     2
                                 vv
clus                              MIXED HISTOLOGY (PLEASE SPECIFY)
  AMP PEAK 26(19P13.12) MUTATED                                  6
  AMP PEAK 26(19P13.12) WILD-TYPE                               24
                                 vv
clus                              MUCINOUS CARCINOMA OTHER  SPECIFY
  AMP PEAK 26(19P13.12) MUTATED                    2             12
  AMP PEAK 26(19P13.12) WILD-TYPE                 15             36
D26V8, multiclass
                                  clus
vv                                 AMP PEAK 26(19P13.12) MUTATED
  INFILTRATING CARCINOMA NOS                                   1
  INFILTRATING DUCTAL CARCINOMA                              167
  INFILTRATING LOBULAR CARCINOMA                              33
  MEDULLARY CARCINOMA                                          4
  METAPLASTIC CARCINOMA                                        2
  MIXED HISTOLOGY (PLEASE SPECIFY)                             6
  MUCINOUS CARCINOMA                                           2
  OTHER  SPECIFY                                              12
                                  clus
vv                                 AMP PEAK 26(19P13.12) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                     0
  INFILTRATING DUCTAL CARCINOMA                                596
  INFILTRATING LOBULAR CARCINOMA                               159
  MEDULLARY CARCINOMA                                            2
  METAPLASTIC CARCINOMA                                          2
  MIXED HISTOLOGY (PLEASE SPECIFY)                              24
  MUCINOUS CARCINOMA                                            15
  OTHER  SPECIFY                                                36
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D26V9, binary
                                 cls
clus                                0   1
  AMP PEAK 26(19P13.12) MUTATED    75 152
  AMP PEAK 26(19P13.12) WILD-TYPE 213 622
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 26(19P13.12) MUTATED     75  152
  AMP PEAK 26(19P13.12) WILD-TYPE  213  622
     clus
vv    AMP PEAK 26(19P13.12) MUTATED AMP PEAK 26(19P13.12) WILD-TYPE
  NO                             75                             213
  YES                           152                             622
[1] 2 2
[1] FALSE
D26V10, continuous
                                 vv
clus                              AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK 26(19P13.12) MUTATED                                  0     8
  AMP PEAK 26(19P13.12) WILD-TYPE                                1    52
                                 vv
clus                              BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 26(19P13.12) MUTATED                          45   159
  AMP PEAK 26(19P13.12) WILD-TYPE                       125   577
D26V11, multiclass
                                  clus
vv                                 AMP PEAK 26(19P13.12) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                             0
  ASIAN                                                        8
  BLACK OR AFRICAN AMERICAN                                   45
  WHITE                                                      159
                                  clus
vv                                 AMP PEAK 26(19P13.12) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                               1
  ASIAN                                                         52
  BLACK OR AFRICAN AMERICAN                                    125
  WHITE                                                        577
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D26V12, binary
                                 cls
clus                                0   1
  AMP PEAK 26(19P13.12) MUTATED     8 184
  AMP PEAK 26(19P13.12) WILD-TYPE  30 674
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 26(19P13.12) MUTATED      8  184
  AMP PEAK 26(19P13.12) WILD-TYPE   30  674
                        clus
vv                       AMP PEAK 26(19P13.12) MUTATED
  HISPANIC OR LATINO                                 8
  NOT HISPANIC OR LATINO                           184
                        clus
vv                       AMP PEAK 26(19P13.12) WILD-TYPE
  HISPANIC OR LATINO                                  30
  NOT HISPANIC OR LATINO                             674
[1] 2 2
[1] FALSE

Clustering(27) Variable = AMP PEAK 27(19Q12) MUTATION ANALYSIS
D27V1, survival
                              sevent
clus2                            0   1
  AMP PEAK 27(19Q12) MUTATED   241  35
  AMP PEAK 27(19Q12) WILD-TYPE 675  93
  AMP PEAK 27(19Q12) MUTATED AMP PEAK 27(19Q12) WILD-TYPE 
                         276                          768 
  AMP PEAK 27(19Q12) MUTATED AMP PEAK 27(19Q12) WILD-TYPE 
                          35                           93 
$`AMP PEAK 27(19Q12) MUTATED`
TCGA-4H-AAAK TCGA-A1-A0SF TCGA-A1-A0SJ TCGA-A1-A0SK TCGA-A2-A04P TCGA-A2-A04Q 
       11.44        48.10        13.68        31.79        18.02        78.41 
TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A0CM TCGA-A2-A0CT TCGA-A2-A0CW TCGA-A2-A0D2 
       73.84        87.25        24.79        75.25       107.93        33.76 
TCGA-A2-A0EQ TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EX TCGA-A2-A0EY TCGA-A2-A0ST 
       79.76        35.05        34.29        24.72        63.29        99.19 
TCGA-A2-A0SX TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T6 TCGA-A2-A0YH TCGA-A2-A0YM 
       50.43         8.38        49.84        18.90        21.67        31.73 
TCGA-A2-A1G0 TCGA-A2-A1G1 TCGA-A2-A3XS TCGA-A2-A3XU TCGA-A2-A3XX TCGA-A2-A3XY 
       20.25        19.20        33.93        29.98        47.31        34.98 
TCGA-A2-A3Y0 TCGA-A2-A4S2 TCGA-A7-A0CD TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A0DC 
       38.37        21.14        38.30        35.67        33.11        29.79 
TCGA-A7-A13D TCGA-A7-A13E TCGA-A7-A26E TCGA-A7-A26I TCGA-A7-A3J0 TCGA-A7-A4SD 
       31.73        20.19        31.36        21.73        10.29        14.50 
TCGA-A7-A4SE TCGA-A7-A56D TCGA-A7-A6VV TCGA-A7-A6VX TCGA-A8-A06O TCGA-A8-A06X 
       21.17        14.73        10.29        10.42        13.02        31.00 
TCGA-A8-A075 TCGA-A8-A07B TCGA-A8-A07O TCGA-A8-A07R TCGA-A8-A07U TCGA-A8-A08O 
       17.03        43.00         9.99         8.98        24.99        31.00 
TCGA-A8-A08R TCGA-A8-A08X TCGA-A8-A092 TCGA-A8-A093 TCGA-A8-A097 TCGA-A8-A09B 
        0.99        43.00        30.97        17.95        12.00        12.00 
TCGA-A8-A09E TCGA-A8-A09M TCGA-A8-A09Q TCGA-A8-A0A9 TCGA-AC-A23E TCGA-AC-A23G 
       49.05        33.07        25.02        27.02         2.37        10.85 
TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A3W5 TCGA-AC-A62Y TCGA-AC-A6IW TCGA-AC-A8OQ 
       26.04        50.70        16.57        17.42        13.58         1.12 
TCGA-AC-A8OS TCGA-AN-A03Y TCGA-AN-A0AK TCGA-AN-A0AM TCGA-AN-A0FJ TCGA-AN-A0FK 
        2.30         0.33         7.36         0.16         7.96         7.00 
TCGA-AN-A0FT TCGA-AN-A0FW TCGA-AN-A0FX TCGA-AN-A0FY TCGA-AN-A0XU TCGA-AN-A0XW 
        7.04         0.36         0.33         0.33         0.33         5.59 
TCGA-AO-A03O TCGA-AO-A0J2 TCGA-AO-A0J4 TCGA-AO-A0J7 TCGA-AO-A0JE TCGA-AO-A0JL 
       81.63        32.78        52.18        20.32        76.77        55.33 
TCGA-AO-A124 TCGA-AO-A129 TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A12F 
      102.58       108.03        90.58        98.27        64.04        48.36 
TCGA-AO-A1KR TCGA-AO-A1KS TCGA-AQ-A54N TCGA-AQ-A54O TCGA-AR-A0TQ TCGA-AR-A0TW 
       70.39         0.53         2.56        32.91        73.64        98.93 
TCGA-AR-A0U0 TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A1AX 
       65.36        61.84        52.77        61.28        63.62        62.14 
TCGA-AR-A24K TCGA-AR-A24U TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A24Z TCGA-AR-A250 
       50.89        53.36        85.35        50.96        79.00        89.00 
TCGA-AR-A251 TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LQ TCGA-AR-A2LR TCGA-AR-A5QM 
       78.48        58.92        93.83        40.54        20.38        54.74 
TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IO TCGA-B6-A0IQ 
       77.62       143.38       112.37       176.98       110.14       140.88 
TCGA-B6-A0RS TCGA-B6-A0RU TCGA-B6-A0WX TCGA-B6-A0WY TCGA-B6-A0WZ TCGA-B6-A0X1 
      100.70       131.21        21.47       113.79       129.57       186.48 
TCGA-B6-A1KC TCGA-B6-A1KI TCGA-B6-A401 TCGA-B6-A402 TCGA-BH-A0AU TCGA-BH-A0AW 
       43.59        73.51        85.35        74.99        24.53        20.45 
TCGA-BH-A0B3 TCGA-BH-A0B6 TCGA-BH-A0BA TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BL 
       39.55        56.94        37.22        24.85        21.70        44.05 
TCGA-BH-A0BR TCGA-BH-A0BW TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0DD TCGA-BH-A0DO 
       53.69        11.67        41.75        44.02        45.83        17.26 
TCGA-BH-A0E9 TCGA-BH-A0GY TCGA-BH-A0H0 TCGA-BH-A0H7 TCGA-BH-A0HQ TCGA-BH-A18K 
       46.19        30.35        15.16        23.08        36.85        90.84 
TCGA-BH-A18L TCGA-BH-A18N TCGA-BH-A18Q TCGA-BH-A18T TCGA-BH-A18V TCGA-BH-A1EN 
       26.66        37.74        55.63         7.36        51.16        69.93 
TCGA-BH-A1EO TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1F6 TCGA-BH-A1FC TCGA-BH-A203 
       91.99        12.00        55.69        97.48       114.15        38.60 
TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A6R9 TCGA-C8-A12L TCGA-C8-A12V TCGA-C8-A12W 
       57.83       130.16         5.26        11.93        12.66        12.66 
TCGA-C8-A130 TCGA-C8-A1HK TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A26Y TCGA-C8-A26Z 
        3.16        12.03         2.30         3.25         0.43         8.28 
TCGA-C8-A274 TCGA-C8-A27B TCGA-D8-A13Z TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A145 
        9.53         0.99        20.88        13.97        14.17        13.48 
TCGA-D8-A147 TCGA-D8-A1J8 TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JH TCGA-D8-A1JL 
       19.20        14.17        12.03        12.03        14.01        20.09 
TCGA-D8-A1JN TCGA-D8-A1JU TCGA-D8-A1X6 TCGA-D8-A1XJ TCGA-D8-A1XU TCGA-D8-A1XW 
       20.38        14.70        17.79        21.83        12.99        12.66 
TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27V TCGA-D8-A27W TCGA-E2-A10B TCGA-E2-A10C 
       13.48         4.80        12.53        12.26        37.51        40.11 
TCGA-E2-A14N TCGA-E2-A14R TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A150 
       47.15        38.60        31.96        28.60        18.51        25.41 
TCGA-E2-A152 TCGA-E2-A153 TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15M TCGA-E2-A1AZ 
       27.12        23.24        20.71        21.63        11.05        60.53 
TCGA-E2-A1II TCGA-E2-A1IN TCGA-E2-A1LG TCGA-E2-A574 TCGA-E2-A576 TCGA-E2-A9RU 
       33.70        22.19        18.87        26.56        34.29        12.85 
TCGA-E9-A1N8 TCGA-E9-A1N9 TCGA-E9-A1NA TCGA-E9-A1R6 TCGA-E9-A1RA TCGA-E9-A1RD 
       12.00        13.12        36.56         2.76        32.09         1.12 
TCGA-E9-A1RI TCGA-E9-A22B TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A243 
       35.64        22.75        41.03        12.89        23.51        17.06 
TCGA-E9-A244 TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A295 TCGA-E9-A3QA TCGA-E9-A3X8 
        0.69         1.94         7.13         0.72        30.18        15.72 
TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UP TCGA-EW-A1J6 TCGA-EW-A1OY TCGA-EW-A1P4 
       14.70         0.79        14.40        28.77        29.85        29.82 
TCGA-EW-A1P8 TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A1PH TCGA-EW-A423 
        7.86        19.99         6.15        13.94        19.96        10.16 
TCGA-GM-A2DC TCGA-GM-A2DD TCGA-GM-A2DF TCGA-HN-A2NL TCGA-JL-A3YW TCGA-LL-A5YN 
       83.34        75.02        70.85         2.60        11.84        14.70 
TCGA-LL-A5YP TCGA-LL-A6FQ TCGA-LL-A6FR TCGA-LL-A73Y TCGA-LL-A8F5 TCGA-LL-A9Q3 
       14.79         2.63        16.08        15.68        14.73        14.07 
TCGA-OL-A5D7 TCGA-OL-A5RW TCGA-OL-A5S0 TCGA-OL-A66I TCGA-OL-A97C TCGA-PL-A8LZ 
       58.52        36.36        20.38        23.47         8.91         9.93 
TCGA-S3-A6ZG TCGA-S3-A6ZH TCGA-S3-AA10 TCGA-S3-AA12 TCGA-UL-AAZ6 TCGA-W8-A86G 
       13.12        16.93        15.39        15.35        17.03        11.41 

$`AMP PEAK 27(19Q12) WILD-TYPE`
TCGA-3C-AAAU TCGA-3C-AALI TCGA-3C-AALJ TCGA-3C-AALK TCGA-5L-AAT0 TCGA-5L-AAT1 
      129.14       131.67        42.81        40.14        48.56        48.36 
TCGA-5T-A9QA TCGA-A1-A0SB TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SG TCGA-A1-A0SH 
        9.96         8.52        14.37        43.43        14.27        47.24 
TCGA-A1-A0SI TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SO TCGA-A1-A0SP TCGA-A1-A0SQ 
       20.88         7.96        39.32        28.01        19.20        18.21 
TCGA-A2-A04N TCGA-A2-A04R TCGA-A2-A04V TCGA-A2-A04W TCGA-A2-A04X TCGA-A2-A04Y 
      104.81       121.94        63.12       101.98        55.43        36.13 
TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CQ TCGA-A2-A0CR 
      136.73        99.12       114.81        92.48        88.60       107.93 
TCGA-A2-A0CS TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CX TCGA-A2-A0D0 TCGA-A2-A0D1 
       75.55         5.19        98.99        56.81        67.33        34.55 
TCGA-A2-A0D3 TCGA-A2-A0D4 TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP 
       61.58        25.22       101.72       134.40        80.28       107.61 
TCGA-A2-A0ER TCGA-A2-A0ES TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0SU TCGA-A2-A0SV 
       74.40        72.00        31.82        61.94        54.64        27.12 
TCGA-A2-A0SW TCGA-A2-A0SY TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T4 TCGA-A2-A0T5 
       44.88        44.28        17.52        17.13        20.52        17.46 
TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YE TCGA-A2-A0YF TCGA-A2-A0YG 
       20.75        32.55        25.28        18.21        50.47        21.90 
TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A0YT TCGA-A2-A1FV 
       49.48        18.61        19.33        48.46        23.77        23.47 
TCGA-A2-A1FW TCGA-A2-A1FX TCGA-A2-A1FZ TCGA-A2-A1G4 TCGA-A2-A1G6 TCGA-A2-A259 
       17.36        60.72        22.45        19.56        16.47        52.47 
TCGA-A2-A25A TCGA-A2-A25B TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F 
      107.70        42.44        17.19        18.15       105.34        10.59 
TCGA-A2-A3KC TCGA-A2-A3KD TCGA-A2-A3XT TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XZ 
       20.88        39.65        83.01        32.75        49.48        50.37 
TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S3 
        7.30        24.39        21.30        23.21        26.96        21.90 
TCGA-A7-A0CE TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0CJ TCGA-A7-A0D9 TCGA-A7-A13F 
       35.31        34.29        35.47        30.61        37.45        25.15 
TCGA-A7-A13G TCGA-A7-A13H TCGA-A7-A26F TCGA-A7-A26G TCGA-A7-A26H TCGA-A7-A26J 
       23.61        29.56        24.26        23.74        23.80        20.61 
TCGA-A7-A2KD TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J1 TCGA-A7-A3RF TCGA-A7-A425 
       22.32        11.34        10.59        11.28        13.41        14.70 
TCGA-A7-A426 TCGA-A7-A4SA TCGA-A7-A4SB TCGA-A7-A4SF TCGA-A7-A5ZV TCGA-A7-A5ZW 
       11.97        14.93        13.74        17.92        12.10        10.72 
TCGA-A7-A5ZX TCGA-A7-A6VW TCGA-A7-A6VY TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06R 
       11.05         9.37         8.75        13.02         1.02        17.98 
TCGA-A8-A06T TCGA-A8-A06U TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A076 TCGA-A8-A079 
       53.06        29.03        26.01         1.02        53.98         9.01 
TCGA-A8-A07E TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07L 
       19.99        18.97        18.97        14.01        12.00        32.05 
TCGA-A8-A07P TCGA-A8-A07S TCGA-A8-A07W TCGA-A8-A07Z TCGA-A8-A082 TCGA-A8-A084 
       10.98         7.99         9.99        45.07        18.05        15.06 
TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08B TCGA-A8-A08C TCGA-A8-A08F 
       36.95        13.02         0.99        38.01        28.96        33.01 
TCGA-A8-A08G TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08P TCGA-A8-A08S 
       19.96        12.00        37.05         9.99        31.00        33.01 
TCGA-A8-A08T TCGA-A8-A08Z TCGA-A8-A091 TCGA-A8-A095 TCGA-A8-A099 TCGA-A8-A09A 
      112.08        40.01        33.01        41.98         9.99         9.99 
TCGA-A8-A09C TCGA-A8-A09D TCGA-A8-A09I TCGA-A8-A09K TCGA-A8-A09N TCGA-A8-A09R 
        1.02        50.04        45.07        29.98         1.02         8.98 
TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0A2 
       19.04        15.02         0.99        14.01        12.00        19.04 
TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A7 TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C 
       13.02        21.04         0.99        17.03        38.04         0.95 
TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FF 
        5.72         1.48        38.53        99.35        40.57        55.43 
TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2QH TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3BB 
       36.99        38.79        33.04         0.92         2.27        32.45 
TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3TN TCGA-AC-A3W6 TCGA-AC-A3YI 
       16.31        14.83        22.19        14.99        19.79        23.24 
TCGA-AC-A3YJ TCGA-AC-A5XS TCGA-AC-A62V TCGA-AC-A62X TCGA-AC-A6IV TCGA-AC-A6IX 
       24.79         1.55        11.44        13.71        18.67        12.26 
TCGA-AC-A6NO TCGA-AC-A7VB TCGA-AC-A7VC TCGA-AC-A8OP TCGA-AC-A8OR TCGA-AN-A03X 
        1.68         8.22         0.03        20.19         1.32         0.33 
TCGA-AN-A041 TCGA-AN-A046 TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A04D 
        0.23         0.33         0.62         2.96         1.78         1.71 
TCGA-AN-A0AJ TCGA-AN-A0AL TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FD 
        9.96         6.51         0.33         0.33         0.33         6.44 
TCGA-AN-A0FF TCGA-AN-A0FL TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FV TCGA-AN-A0FZ 
        5.65         7.59         7.17         6.28         0.33         0.33 
TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS 
        0.33         0.33        12.33         0.30         0.33         0.33 
TCGA-AN-A0XT TCGA-AN-A0XV TCGA-AO-A03L TCGA-AO-A03M TCGA-AO-A03N TCGA-AO-A03P 
        0.33         5.33        80.28        61.35        66.77        95.70 
TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J3 TCGA-AO-A0J5 
       68.75        47.87        58.95        29.13        21.40        26.04 
TCGA-AO-A0J6 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JC 
       37.48        22.36        53.03        21.53        50.70        50.86 
TCGA-AO-A0JD TCGA-AO-A0JF TCGA-AO-A0JG TCGA-AO-A0JI TCGA-AO-A0JJ TCGA-AO-A0JM 
       72.00        21.37        26.24        50.24        62.04        71.80 
TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 TCGA-AO-A12E TCGA-AO-A12G TCGA-AO-A12H 
       99.25       108.72       106.78        57.30        41.62        28.37 
TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KQ TCGA-AO-A1KT TCGA-AQ-A04H TCGA-AQ-A04J 
       14.73        82.62        61.87        17.79        24.79        26.93 
TCGA-AQ-A04L TCGA-AQ-A0Y5 TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AQ-A7U7 TCGA-AR-A0TP 
      130.09         5.65        15.62        32.52        19.20       111.32 
TCGA-AR-A0TR TCGA-AR-A0TS TCGA-AR-A0TT TCGA-AR-A0TV TCGA-AR-A0TX TCGA-AR-A0TY 
        5.26        74.79        86.66        42.35        64.83        55.86 
TCGA-AR-A0TZ TCGA-AR-A0U1 TCGA-AR-A0U2 TCGA-AR-A0U3 TCGA-AR-A0U4 TCGA-AR-A1AH 
      107.24       101.95        83.87       114.02        85.97        75.55 
TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AM TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AP 
       51.25        48.82        76.11        43.73        43.56        39.98 
TCGA-AR-A1AQ TCGA-AR-A1AR TCGA-AR-A1AS TCGA-AR-A1AU TCGA-AR-A1AY TCGA-AR-A24H 
       43.07        17.23        37.81        76.21        33.73       160.90 
TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24Q 
       94.22        96.89        78.51        84.20         2.76       104.28 
TCGA-AR-A24R TCGA-AR-A24S TCGA-AR-A24T TCGA-AR-A24X TCGA-AR-A252 TCGA-AR-A254 
       87.22        97.84        76.01        83.77        73.18        72.76 
TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LL TCGA-AR-A2LM 
      143.21        20.25        62.86        54.21        66.15        52.11 
TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I5 
       38.17        39.39        16.04        20.45        10.59       149.59 
TCGA-B6-A0I9 TCGA-B6-A0IA TCGA-B6-A0IB TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG 
       12.13       220.90       129.57        50.70        65.72       146.50 
TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IP TCGA-B6-A0RE TCGA-B6-A0RG 
       18.77       126.12        84.59       110.93       211.56        68.45 
TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RL TCGA-B6-A0RM TCGA-B6-A0RN TCGA-B6-A0RO 
      189.01       234.28        81.17        78.02       172.96       162.05 
TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT 
      102.77       140.48        89.46       157.41        97.48       188.68 
TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0X0 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 
       79.63        18.35       129.70        28.27        68.94        58.88 
TCGA-B6-A1KF TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A408 TCGA-B6-A40B TCGA-B6-A40C 
      101.52       139.17       170.17        68.12       103.63        71.15 
TCGA-BH-A0AV TCGA-BH-A0AY TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B2 TCGA-BH-A0B4 
       59.84        25.55        28.50        46.95        40.83        39.16 
TCGA-BH-A0B5 TCGA-BH-A0B7 TCGA-BH-A0B9 TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BF 
       48.36        56.98        51.68        32.02        18.21        25.71 
TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BP TCGA-BH-A0BQ TCGA-BH-A0BS TCGA-BH-A0BT 
       61.68        35.67        48.69        27.19        53.95        45.57 
TCGA-BH-A0BV TCGA-BH-A0BZ TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DE TCGA-BH-A0DG 
       49.94        49.05        48.13        42.90        31.17        23.44 
TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DP TCGA-BH-A0DQ 
       38.01        22.13        13.91        48.23        15.65         3.22 
TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E0 
        2.56        38.47        67.86        47.41        16.27         4.41 
TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E6 TCGA-BH-A0E7 TCGA-BH-A0EA TCGA-BH-A0EB 
       15.68        14.30         9.63        44.81        32.58        24.49 
TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0GZ TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 
       31.00        24.43        10.78        37.78        35.51        24.56 
TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HO 
       41.00        52.96        26.50        20.38         5.85         2.50 
TCGA-BH-A0HP TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0RX 
       13.61        12.89        51.32        27.25        50.79         5.59 
TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A0WA TCGA-BH-A18F 
       23.93        24.95        42.35        44.81        23.05         8.81 
TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18M TCGA-BH-A18P TCGA-BH-A18R 
        2.01         7.23        20.12        72.56        30.28        37.55 
TCGA-BH-A18S TCGA-BH-A18U TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EX 
       66.05        51.39       113.82        82.85        42.28        49.58 
TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F2 TCGA-BH-A1F5 TCGA-BH-A1F8 TCGA-BH-A1FB 
       17.69        25.81        31.53        89.16        24.66       120.62 
TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL 
       33.17        74.73       122.89        36.92        63.35        55.00 
TCGA-BH-A1FM TCGA-BH-A1FN TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A201 TCGA-BH-A202 
       45.63        72.07       144.59        72.07        28.14        26.14 
TCGA-BH-A204 TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U 
       83.31        10.65         6.44        20.12        10.52       109.28 
TCGA-BH-A42V TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-BH-A6R8 TCGA-BH-A8FY TCGA-BH-A8FZ 
        8.94        18.64        23.51         9.63         9.70        18.87 
TCGA-BH-A8G0 TCGA-BH-AB28 TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12P 
       21.76         9.44        11.77        11.77        12.66        11.77 
TCGA-C8-A12Q TCGA-C8-A12U TCGA-C8-A12X TCGA-C8-A12Z TCGA-C8-A131 TCGA-C8-A132 
       12.66        12.66        12.66         0.39         2.24         1.87 
TCGA-C8-A134 TCGA-C8-A135 TCGA-C8-A137 TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HF 
        1.12         1.05         4.11         4.08        12.33        10.92 
TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HJ TCGA-C8-A1HL TCGA-C8-A26V TCGA-C8-A26W 
       11.34        11.28         0.16        10.42         0.30         0.23 
TCGA-C8-A26X TCGA-C8-A273 TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A3M7 
        0.36         9.67         0.03         9.50        12.20         0.03 
TCGA-C8-A3M8 TCGA-C8-A8HP TCGA-C8-A8HQ TCGA-C8-A8HR TCGA-C8-A9FZ TCGA-D8-A13Y 
        0.23        13.02        12.49        13.41        19.46        11.90 
TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A146 TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JB 
       13.25        20.58        21.14        17.49        16.50        18.71 
TCGA-D8-A1JC TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JI TCGA-D8-A1JJ TCGA-D8-A1JK 
       15.78        18.15        18.90        18.97        20.09        20.12 
TCGA-D8-A1JM TCGA-D8-A1JP TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1X5 TCGA-D8-A1X7 
       19.40        21.01        12.20        13.32        18.58        16.73 
TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XD 
       25.74        23.90        27.58        18.15        12.39        17.16 
TCGA-D8-A1XF TCGA-D8-A1XG TCGA-D8-A1XK TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO 
       15.22        14.73        14.50        19.92        17.69        15.55 
TCGA-D8-A1XQ TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XT TCGA-D8-A1XV TCGA-D8-A1XY 
       16.41        15.85        16.31         6.35        15.16        16.54 
TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 TCGA-D8-A1Y3 TCGA-D8-A27E 
       15.32        15.52         9.93        14.24        14.14        17.42 
TCGA-D8-A27F TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27L 
       16.04        13.45        13.05        14.43         9.44        16.41 
TCGA-D8-A27P TCGA-D8-A27R TCGA-D8-A27T TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 
        0.76        10.09        13.08        33.37        18.51        21.67 
TCGA-D8-A73U TCGA-D8-A73W TCGA-D8-A73X TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A108 
       16.18         8.02        12.10        43.00        34.42        27.52 
TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14O TCGA-E2-A14P 
       46.59        40.41        28.44        28.87        44.68        40.96 
TCGA-E2-A14Q TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14W 
       38.24        33.17        33.30        43.33        34.26        32.02 
TCGA-E2-A154 TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A158 TCGA-E2-A159 TCGA-E2-A15A 
       19.43        21.04        23.87        14.79        25.05        23.34 
TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15I TCGA-E2-A15J 
       22.82        17.29        18.21        12.92        17.42        19.40 
TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15O TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A15S 
        9.04        20.58        13.02        19.56        17.06        14.07 
TCGA-E2-A15T TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 
       14.99        53.62        53.03        33.01        32.35        28.50 
TCGA-E2-A1BC TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1IH 
       16.47        17.10        38.30        37.41        32.78        33.73 
TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IO TCGA-E2-A1IU TCGA-E2-A1L6 
       28.44        22.65         3.88        20.98        11.08        54.18 
TCGA-E2-A1L7 TCGA-E2-A1L8 TCGA-E2-A1L9 TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LE 
       27.42        39.62        19.66        24.59        40.47        28.90 
TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A1LL TCGA-E2-A2P5 TCGA-E2-A2P6 
      106.75       102.61         8.75        43.04        16.93         5.52 
TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A573 TCGA-E9-A1N3 TCGA-E9-A1N4 
       15.72         8.28        30.61        34.92        34.82        32.88 
TCGA-E9-A1N5 TCGA-E9-A1N6 TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NF 
       36.82        13.48        39.55        12.59        35.77        35.24 
TCGA-E9-A1NG TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R3 
       25.84         9.86        11.90        28.27        34.95         2.56 
TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R7 TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RE 
        6.12         3.02        21.21        32.09        40.24        34.65 
TCGA-E9-A1RF TCGA-E9-A1RG TCGA-E9-A1RH TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A228 
        6.58        21.27        34.59        34.13        32.05        12.53 
TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22H TCGA-E9-A247 TCGA-E9-A24A TCGA-E9-A2JS 
       13.32        39.09        20.71        27.22        24.56        29.72 
TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A54X TCGA-E9-A54Y TCGA-E9-A5UO 
        0.76        26.07        18.41        12.33        23.84        13.81 
TCGA-E9-A6HE TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 
       15.39        12.20        39.72         8.48        18.21        18.90 
TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J5 TCGA-EW-A1OV TCGA-EW-A1OW TCGA-EW-A1OX 
       13.25        16.57        15.68        25.94        22.82        29.95 
TCGA-EW-A1OZ TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P3 TCGA-EW-A1P5 TCGA-EW-A1P6 
       40.41        41.13        39.78        52.96        23.11        18.48 
TCGA-EW-A1P7 TCGA-EW-A1PA TCGA-EW-A1PE TCGA-EW-A1PF TCGA-EW-A1PG TCGA-EW-A2FR 
       30.08        18.90        10.52        14.43        34.55        55.00 
TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A3U0 TCGA-EW-A424 
       52.73        25.91        22.09        34.03        17.49        23.51 
TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DH 
        7.40       109.87        59.57       216.76        79.10        72.10 
TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A2DO 
       85.15        86.96       115.69       106.06       101.62        85.35 
TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XL TCGA-GM-A3XN TCGA-GM-A4E0 
      110.50        38.20        43.73        69.30        66.38        72.03 
TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2OB TCGA-JL-A3YX TCGA-LD-A66U TCGA-LD-A74U 
       13.55        18.12        62.43        11.57        21.24        13.22 
TCGA-LD-A7W5 TCGA-LD-A7W6 TCGA-LD-A9QF TCGA-LL-A440 TCGA-LL-A441 TCGA-LL-A442 
        7.10        13.28        10.62        24.95        11.44        10.95 
TCGA-LL-A50Y TCGA-LL-A5YL TCGA-LL-A5YM TCGA-LL-A5YO TCGA-LL-A6FP TCGA-LL-A73Z 
       25.05        17.06        15.32        14.47        22.26         7.46 
TCGA-LL-A740 TCGA-LL-A7SZ TCGA-LL-A7T0 TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 
       14.50        14.70        12.36        27.91        22.39         2.10 
TCGA-OL-A5D6 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RU TCGA-OL-A5RV TCGA-OL-A5RX 
       36.30        31.99        58.62        40.08        34.92        28.87 
TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A66H TCGA-OL-A66J TCGA-OL-A66K TCGA-OL-A66L 
       24.72        22.32        26.70        65.62        41.92        42.77 
TCGA-OL-A66N TCGA-OL-A66O TCGA-OL-A66P TCGA-OL-A6VO TCGA-OL-A6VQ TCGA-OL-A6VR 
       26.04        17.36        14.07        28.21        19.73        40.11 
TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE TCGA-PL-A8LX TCGA-PL-A8LY TCGA-S3-A6ZF 
       47.01        64.21        86.96         0.16         0.26        16.50 
TCGA-S3-AA0Z TCGA-S3-AA11 TCGA-S3-AA14 TCGA-S3-AA15 TCGA-S3-AA17 TCGA-UU-A93S 
       16.80        13.84        14.96        13.84        13.94         3.81 
TCGA-WT-AB41 TCGA-WT-AB44 TCGA-XX-A899 TCGA-XX-A89A TCGA-Z7-A8R5 TCGA-Z7-A8R6 
       52.96        29.03        15.35        16.04       108.07       107.05 

  AMP PEAK 27(19Q12) MUTATED AMP PEAK 27(19Q12) WILD-TYPE 
                        0.16                         0.03 
  AMP PEAK 27(19Q12) MUTATED AMP PEAK 27(19Q12) WILD-TYPE 
                      186.48                       234.28 
  AMP PEAK 27(19Q12) MUTATED AMP PEAK 27(19Q12) WILD-TYPE 
                      24.625                       24.525 
[1] "0.2 - 186.5 (24.6)" "0.0 - 234.3 (24.5)"
[1] "hr=" "1.1"
D27V2, continuous
                              vv
clus                           STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  AMP PEAK 27(19Q12) MUTATED        23       17        2        0       120
  AMP PEAK 27(19Q12) WILD-TYPE      66       64        6        3       233
                              vv
clus                           STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  AMP PEAK 27(19Q12) MUTATED          54         0         35          8
  AMP PEAK 27(19Q12) WILD-TYPE       191         2        115         21
                              vv
clus                           STAGE IIIC STAGE IV STAGE TIS STAGE X
  AMP PEAK 27(19Q12) MUTATED           12        4         0       0
  AMP PEAK 27(19Q12) WILD-TYPE         51       16         1      13
D27V3, multiclass
            clus
vv           AMP PEAK 27(19Q12) MUTATED AMP PEAK 27(19Q12) WILD-TYPE
  STAGE I                            23                           66
  STAGE IA                           17                           64
  STAGE IB                            2                            6
  STAGE II                            0                            3
  STAGE IIA                         120                          233
  STAGE IIB                          54                          191
  STAGE III                           0                            2
  STAGE IIIA                         35                          115
  STAGE IIIB                          8                           21
  STAGE IIIC                         12                           51
  STAGE IV                            4                           16
  STAGE TIS                           0                            1
  STAGE X                             0                           13
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                            T1  T2  T3  T4
  AMP PEAK 27(19Q12) MUTATED    64 171  33  10
  AMP PEAK 27(19Q12) WILD-TYPE 208 445  97  30
D27V4, multiclass
    clus
vv   AMP PEAK 27(19Q12) MUTATED AMP PEAK 27(19Q12) WILD-TYPE
  T1                         64                          208
  T2                        171                          445
  T3                         33                           97
  T4                         10                           30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                            N0  N1  N2  N3
  AMP PEAK 27(19Q12) MUTATED   153  82  28  14
  AMP PEAK 27(19Q12) WILD-TYPE 348 268  89  61
D27V5, multiclass
    clus
vv   AMP PEAK 27(19Q12) MUTATED AMP PEAK 27(19Q12) WILD-TYPE
  N0                        153                          348
  N1                         82                          268
  N2                         28                           89
  N3                         14                           61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D27V6, binary
                              cls
clus                             0   1
  AMP PEAK 27(19Q12) MUTATED   241   4
  AMP PEAK 27(19Q12) WILD-TYPE 638  17
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 27(19Q12) MUTATED    241    4
  AMP PEAK 27(19Q12) WILD-TYPE  638   17
   clus
vv  AMP PEAK 27(19Q12) MUTATED AMP PEAK 27(19Q12) WILD-TYPE
  0                        241                          638
  1                          4                           17
[1] 2 2
[1] FALSE
D27V7, binary
                              cls
clus                             0   1
  AMP PEAK 27(19Q12) MUTATED   274   4
  AMP PEAK 27(19Q12) WILD-TYPE 777   7
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 27(19Q12) MUTATED    274    4
  AMP PEAK 27(19Q12) WILD-TYPE  777    7
        clus
vv       AMP PEAK 27(19Q12) MUTATED AMP PEAK 27(19Q12) WILD-TYPE
  FEMALE                        274                          777
  MALE                            4                            7
[1] 2 2
[1] FALSE
                              vv
clus                           INFILTRATING CARCINOMA NOS
  AMP PEAK 27(19Q12) MUTATED                            0
  AMP PEAK 27(19Q12) WILD-TYPE                          1
                              vv
clus                           INFILTRATING DUCTAL CARCINOMA
  AMP PEAK 27(19Q12) MUTATED                             221
  AMP PEAK 27(19Q12) WILD-TYPE                           542
                              vv
clus                           INFILTRATING LOBULAR CARCINOMA
  AMP PEAK 27(19Q12) MUTATED                               29
  AMP PEAK 27(19Q12) WILD-TYPE                            163
                              vv
clus                           MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  AMP PEAK 27(19Q12) MUTATED                     6                     2
  AMP PEAK 27(19Q12) WILD-TYPE                   0                     2
                              vv
clus                           MIXED HISTOLOGY (PLEASE SPECIFY)
  AMP PEAK 27(19Q12) MUTATED                                  6
  AMP PEAK 27(19Q12) WILD-TYPE                               24
                              vv
clus                           MUCINOUS CARCINOMA OTHER  SPECIFY
  AMP PEAK 27(19Q12) MUTATED                    2             12
  AMP PEAK 27(19Q12) WILD-TYPE                 15             36
D27V8, multiclass
                                  clus
vv                                 AMP PEAK 27(19Q12) MUTATED
  INFILTRATING CARCINOMA NOS                                0
  INFILTRATING DUCTAL CARCINOMA                           221
  INFILTRATING LOBULAR CARCINOMA                           29
  MEDULLARY CARCINOMA                                       6
  METAPLASTIC CARCINOMA                                     2
  MIXED HISTOLOGY (PLEASE SPECIFY)                          6
  MUCINOUS CARCINOMA                                        2
  OTHER  SPECIFY                                           12
                                  clus
vv                                 AMP PEAK 27(19Q12) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                  1
  INFILTRATING DUCTAL CARCINOMA                             542
  INFILTRATING LOBULAR CARCINOMA                            163
  MEDULLARY CARCINOMA                                         0
  METAPLASTIC CARCINOMA                                       2
  MIXED HISTOLOGY (PLEASE SPECIFY)                           24
  MUCINOUS CARCINOMA                                         15
  OTHER  SPECIFY                                             36
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D27V9, binary
                              cls
clus                             0   1
  AMP PEAK 27(19Q12) MUTATED    81 197
  AMP PEAK 27(19Q12) WILD-TYPE 207 577
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 27(19Q12) MUTATED     81  197
  AMP PEAK 27(19Q12) WILD-TYPE  207  577
     clus
vv    AMP PEAK 27(19Q12) MUTATED AMP PEAK 27(19Q12) WILD-TYPE
  NO                          81                          207
  YES                        197                          577
[1] 2 2
[1] FALSE
D27V10, continuous
                              vv
clus                           AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK 27(19Q12) MUTATED                                  0    13
  AMP PEAK 27(19Q12) WILD-TYPE                                1    47
                              vv
clus                           BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 27(19Q12) MUTATED                          58   187
  AMP PEAK 27(19Q12) WILD-TYPE                       112   549
D27V11, multiclass
                                  clus
vv                                 AMP PEAK 27(19Q12) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                          0
  ASIAN                                                    13
  BLACK OR AFRICAN AMERICAN                                58
  WHITE                                                   187
                                  clus
vv                                 AMP PEAK 27(19Q12) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                            1
  ASIAN                                                      47
  BLACK OR AFRICAN AMERICAN                                 112
  WHITE                                                     549
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D27V12, binary
                              cls
clus                             0   1
  AMP PEAK 27(19Q12) MUTATED    10 225
  AMP PEAK 27(19Q12) WILD-TYPE  28 633
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 27(19Q12) MUTATED     10  225
  AMP PEAK 27(19Q12) WILD-TYPE   28  633
                        clus
vv                       AMP PEAK 27(19Q12) MUTATED
  HISPANIC OR LATINO                             10
  NOT HISPANIC OR LATINO                        225
                        clus
vv                       AMP PEAK 27(19Q12) WILD-TYPE
  HISPANIC OR LATINO                               28
  NOT HISPANIC OR LATINO                          633
[1] 2 2
[1] FALSE

Clustering(28) Variable = AMP PEAK 28(19Q13.42) MUTATION ANALYSIS
D28V1, survival
                                 sevent
clus2                               0   1
  AMP PEAK 28(19Q13.42) MUTATED   234  33
  AMP PEAK 28(19Q13.42) WILD-TYPE 682  95
  AMP PEAK 28(19Q13.42) MUTATED AMP PEAK 28(19Q13.42) WILD-TYPE 
                            267                             777 
  AMP PEAK 28(19Q13.42) MUTATED AMP PEAK 28(19Q13.42) WILD-TYPE 
                             33                              95 
$`AMP PEAK 28(19Q13.42) MUTATED`
TCGA-4H-AAAK TCGA-A1-A0SF TCGA-A1-A0SJ TCGA-A1-A0SK TCGA-A1-A0SO TCGA-A1-A0SQ 
       11.44        48.10        13.68        31.79        28.01        18.21 
TCGA-A2-A04P TCGA-A2-A04Q TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04W TCGA-A2-A0CT 
       18.02        78.41        73.84        87.25       101.98        75.25 
TCGA-A2-A0D0 TCGA-A2-A0D2 TCGA-A2-A0D4 TCGA-A2-A0EQ TCGA-A2-A0ET TCGA-A2-A0EU 
       67.33        33.76        25.22        79.76        35.05        34.29 
TCGA-A2-A0EX TCGA-A2-A0EY TCGA-A2-A0T0 TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T6 
       24.72        63.29        17.52         8.38        49.84        18.90 
TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A1G0 TCGA-A2-A25D TCGA-A2-A3XS TCGA-A2-A3XU 
       21.90        21.67        20.25        18.15        33.93        29.98 
TCGA-A2-A3Y0 TCGA-A2-A4S2 TCGA-A7-A0CD TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A0DC 
       38.37        21.14        38.30        35.67        33.11        29.79 
TCGA-A7-A13D TCGA-A7-A26E TCGA-A7-A26I TCGA-A7-A3J0 TCGA-A7-A4SD TCGA-A7-A56D 
       31.73        31.36        21.73        10.29        14.50        14.73 
TCGA-A7-A5ZV TCGA-A7-A6VV TCGA-A7-A6VX TCGA-A8-A06O TCGA-A8-A06R TCGA-A8-A075 
       12.10        10.29        10.42        13.02        17.98        17.03 
TCGA-A8-A07B TCGA-A8-A07R TCGA-A8-A07U TCGA-A8-A07W TCGA-A8-A07Z TCGA-A8-A08F 
       43.00         8.98        24.99         9.99        45.07        33.01 
TCGA-A8-A08I TCGA-A8-A08O TCGA-A8-A08X TCGA-A8-A092 TCGA-A8-A093 TCGA-A8-A097 
       12.00        31.00        43.00        30.97        17.95        12.00 
TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09E TCGA-A8-A09Q TCGA-A8-A0A6 TCGA-A8-A0A7 
        9.99        12.00        49.05        25.02        21.04         0.99 
TCGA-A8-A0A9 TCGA-AC-A23E TCGA-AC-A23G TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A62Y 
       27.02         2.37        10.85        26.04        50.70        17.42 
TCGA-AC-A6IW TCGA-AC-A8OS TCGA-AN-A03Y TCGA-AN-A04C TCGA-AN-A0AK TCGA-AN-A0AM 
       13.58         2.30         0.33         1.78         7.36         0.16 
TCGA-AN-A0FK TCGA-AN-A0FW TCGA-AN-A0FX TCGA-AN-A0FY TCGA-AN-A0XW TCGA-AO-A03L 
        7.00         0.36         0.33         0.33         5.59        80.28 
TCGA-AO-A03M TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03V TCGA-AO-A0J2 TCGA-AO-A0J7 
       61.35        81.63        95.70        29.13        32.78        20.32 
TCGA-AO-A0JE TCGA-AO-A124 TCGA-AO-A128 TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12D 
       76.77       102.58       106.78        90.58        98.27        64.04 
TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A1KQ TCGA-AO-A1KR TCGA-AO-A1KS TCGA-AQ-A54N 
       48.36        41.62        61.87        70.39         0.53         2.56 
TCGA-AQ-A54O TCGA-AR-A0TQ TCGA-AR-A0TT TCGA-AR-A0TW TCGA-AR-A1AV TCGA-AR-A1AW 
       32.91        73.64        86.66        98.93        61.28        63.62 
TCGA-AR-A1AX TCGA-AR-A24K TCGA-AR-A24L TCGA-AR-A24Q TCGA-AR-A24V TCGA-AR-A24W 
       62.14        50.89        94.22       104.28        85.35        50.96 
TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A255 TCGA-AR-A2LQ TCGA-AR-A2LR TCGA-AR-A5QM 
       79.00        89.00        58.92        40.54        20.38        54.74 
TCGA-B6-A0I2 TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IN TCGA-B6-A0IO TCGA-B6-A0IQ 
      143.38       112.37       176.98        84.59       110.14       140.88 
TCGA-B6-A0RS TCGA-B6-A0RU TCGA-B6-A0WZ TCGA-B6-A1KC TCGA-B6-A1KI TCGA-B6-A401 
      100.70       131.21       129.57        43.59        73.51        85.35 
TCGA-BH-A0AU TCGA-BH-A0AW TCGA-BH-A0B3 TCGA-BH-A0B6 TCGA-BH-A0B9 TCGA-BH-A0BA 
       24.53        20.45        39.55        56.94        51.68        37.22 
TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BP TCGA-BH-A0BT TCGA-BH-A0C0 
       24.85        21.70        44.05        48.69        45.57        41.75 
TCGA-BH-A0C1 TCGA-BH-A0DD TCGA-BH-A0DO TCGA-BH-A0E0 TCGA-BH-A0E6 TCGA-BH-A0E9 
       44.02        45.83        17.26         4.41         9.63        46.19 
TCGA-BH-A0GY TCGA-BH-A0H0 TCGA-BH-A0H7 TCGA-BH-A0HQ TCGA-BH-A18K TCGA-BH-A18L 
       30.35        15.16        23.08        36.85        90.84        26.66 
TCGA-BH-A18N TCGA-BH-A18Q TCGA-BH-A18U TCGA-BH-A1EN TCGA-BH-A1EO TCGA-BH-A1ES 
       37.74        55.63        51.39        69.93        91.99       113.82 
TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1FD TCGA-BH-A1FM TCGA-BH-A1FN TCGA-BH-A203 
       12.00        55.69        33.17        45.63        72.07        38.60 
TCGA-BH-A208 TCGA-BH-A6R9 TCGA-C8-A12L TCGA-C8-A12V TCGA-C8-A12W TCGA-C8-A130 
       57.83         5.26        11.93        12.66        12.66         3.16 
TCGA-C8-A1HK TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A26W TCGA-C8-A26Z TCGA-C8-A273 
       12.03         2.30         3.25         0.23         8.28         9.67 
TCGA-C8-A274 TCGA-C8-A275 TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A145 TCGA-D8-A1J8 
        9.53         0.03        13.97        14.17        13.48        14.17 
TCGA-D8-A1JF TCGA-D8-A1JH TCGA-D8-A1JL TCGA-D8-A1JN TCGA-D8-A1JP TCGA-D8-A1JU 
       12.03        14.01        20.09        20.38        21.01        14.70 
TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1XD TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XQ 
       18.58        17.79        17.16        21.83        14.50        16.41 
TCGA-D8-A1XU TCGA-D8-A1XW TCGA-D8-A1XZ TCGA-D8-A27N TCGA-D8-A27R TCGA-D8-A27V 
       12.99        12.66        15.32         4.80        10.09        12.53 
TCGA-D8-A27W TCGA-E2-A10B TCGA-E2-A10C TCGA-E2-A14Q TCGA-E2-A14X TCGA-E2-A14Y 
       12.26        37.51        40.11        38.24        31.96        28.60 
TCGA-E2-A152 TCGA-E2-A153 TCGA-E2-A159 TCGA-E2-A15F TCGA-E2-A15M TCGA-E2-A15S 
       27.12        23.24        25.05        21.63        11.05        14.07 
TCGA-E2-A1AZ TCGA-E2-A1II TCGA-E2-A1IN TCGA-E2-A1IO TCGA-E2-A1LG TCGA-E2-A576 
       60.53        33.70        22.19        20.98        18.87        34.29 
TCGA-E9-A1N8 TCGA-E9-A1N9 TCGA-E9-A1NG TCGA-E9-A1R6 TCGA-E9-A1RA TCGA-E9-A1RD 
       12.00        13.12        25.84         2.76        32.09         1.12 
TCGA-E9-A1RF TCGA-E9-A1RH TCGA-E9-A1RI TCGA-E9-A22B TCGA-E9-A22D TCGA-E9-A22E 
        6.58        34.59        35.64        22.75        41.03        12.89 
TCGA-E9-A249 TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A3X8 TCGA-E9-A5FK TCGA-E9-A5FL 
        7.13         0.72        29.72        15.72        14.70         0.79 
TCGA-E9-A5UP TCGA-EW-A1J6 TCGA-EW-A1OV TCGA-EW-A1P4 TCGA-EW-A1P8 TCGA-EW-A1PA 
       14.40        28.77        25.94        29.82         7.86        18.90 
TCGA-EW-A1PD TCGA-EW-A1PF TCGA-EW-A423 TCGA-GM-A2D9 TCGA-GM-A2DC TCGA-GM-A2DD 
       13.94        14.43        10.16        59.57        83.34        75.02 
TCGA-LL-A5YP TCGA-LL-A6FQ TCGA-LL-A73Y TCGA-LL-A7SZ TCGA-LL-A9Q3 TCGA-MS-A51U 
       14.79         2.63        15.68        14.70        14.07        22.39 
TCGA-OL-A97C TCGA-PE-A5DC TCGA-PL-A8LZ TCGA-S3-A6ZF TCGA-S3-A6ZG TCGA-S3-A6ZH 
        8.91        47.01         9.93        16.50        13.12        16.93 
TCGA-S3-AA10 TCGA-UL-AAZ6 TCGA-W8-A86G 
       15.39        17.03        11.41 

$`AMP PEAK 28(19Q13.42) WILD-TYPE`
TCGA-3C-AAAU TCGA-3C-AALI TCGA-3C-AALJ TCGA-3C-AALK TCGA-5L-AAT0 TCGA-5L-AAT1 
      129.14       131.67        42.81        40.14        48.56        48.36 
TCGA-5T-A9QA TCGA-A1-A0SB TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SG TCGA-A1-A0SH 
        9.96         8.52        14.37        43.43        14.27        47.24 
TCGA-A1-A0SI TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SP TCGA-A2-A04N TCGA-A2-A04R 
       20.88         7.96        39.32        19.20       104.81       121.94 
TCGA-A2-A04V TCGA-A2-A04X TCGA-A2-A04Y TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CM 
       63.12        55.43        36.13       136.73        99.12        24.79 
TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CQ TCGA-A2-A0CR TCGA-A2-A0CS TCGA-A2-A0CU 
      114.81        92.48        88.60       107.93        75.55         5.19 
TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0CX TCGA-A2-A0D1 TCGA-A2-A0D3 TCGA-A2-A0EM 
       98.99       107.93        56.81        34.55        61.58       101.72 
TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0ER TCGA-A2-A0ES TCGA-A2-A0EV 
      134.40        80.28       107.61        74.40        72.00        31.82 
TCGA-A2-A0EW TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0SX 
       61.94        99.19        54.64        27.12        44.88        50.43 
TCGA-A2-A0SY TCGA-A2-A0T1 TCGA-A2-A0T4 TCGA-A2-A0T5 TCGA-A2-A0T7 TCGA-A2-A0YC 
       44.28        17.13        20.52        17.46        20.75        32.55 
TCGA-A2-A0YD TCGA-A2-A0YE TCGA-A2-A0YF TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A0YK 
       25.28        18.21        50.47        49.48        18.61        19.33 
TCGA-A2-A0YL TCGA-A2-A0YM TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1FX 
       48.46        31.73        23.77        23.47        17.36        60.72 
TCGA-A2-A1FZ TCGA-A2-A1G1 TCGA-A2-A1G4 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25A 
       22.45        19.20        19.56        16.47        52.47       107.70 
TCGA-A2-A25B TCGA-A2-A25C TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD 
       42.44        17.19       105.34        10.59        20.88        39.65 
TCGA-A2-A3XT TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX TCGA-A2-A3XY TCGA-A2-A3XZ 
       83.01        32.75        49.48        47.31        34.98        50.37 
TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S3 
        7.30        24.39        21.30        23.21        26.96        21.90 
TCGA-A7-A0CE TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0CJ TCGA-A7-A0D9 TCGA-A7-A13E 
       35.31        34.29        35.47        30.61        37.45        20.19 
TCGA-A7-A13F TCGA-A7-A13G TCGA-A7-A13H TCGA-A7-A26F TCGA-A7-A26G TCGA-A7-A26H 
       25.15        23.61        29.56        24.26        23.74        23.80 
TCGA-A7-A26J TCGA-A7-A2KD TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J1 TCGA-A7-A3RF 
       20.61        22.32        11.34        10.59        11.28        13.41 
TCGA-A7-A425 TCGA-A7-A426 TCGA-A7-A4SA TCGA-A7-A4SB TCGA-A7-A4SE TCGA-A7-A4SF 
       14.70        11.97        14.93        13.74        21.17        17.92 
TCGA-A7-A5ZW TCGA-A7-A5ZX TCGA-A7-A6VW TCGA-A7-A6VY TCGA-A8-A06P TCGA-A8-A06Q 
       10.72        11.05         9.37         8.75        13.02         1.02 
TCGA-A8-A06T TCGA-A8-A06U TCGA-A8-A06X TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A076 
       53.06        29.03        31.00        26.01         1.02        53.98 
TCGA-A8-A079 TCGA-A8-A07E TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07J 
        9.01        19.99        18.97        18.97        14.01        12.00 
TCGA-A8-A07L TCGA-A8-A07O TCGA-A8-A07P TCGA-A8-A07S TCGA-A8-A082 TCGA-A8-A084 
       32.05         9.99        10.98         7.99        18.05        15.06 
TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08B TCGA-A8-A08C TCGA-A8-A08G 
       36.95        13.02         0.99        38.01        28.96        19.96 
TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08P TCGA-A8-A08R TCGA-A8-A08S TCGA-A8-A08T 
       37.05         9.99        31.00         0.99        33.01       112.08 
TCGA-A8-A08Z TCGA-A8-A091 TCGA-A8-A095 TCGA-A8-A099 TCGA-A8-A09C TCGA-A8-A09D 
       40.01        33.01        41.98         9.99         1.02        50.04 
TCGA-A8-A09I TCGA-A8-A09K TCGA-A8-A09M TCGA-A8-A09N TCGA-A8-A09R TCGA-A8-A09T 
       45.07        29.98        33.07         1.02         8.98        19.04 
TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 
       15.02         0.99        14.01        12.00        19.04        13.02 
TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2BK 
       17.03        38.04         0.95         5.72         1.48        38.53 
TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2QH 
       99.35        40.57        55.43        36.99        38.79        33.04 
TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QP 
        0.92         2.27        32.45        16.31        14.83        22.19 
TCGA-AC-A3TN TCGA-AC-A3W5 TCGA-AC-A3W6 TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A5XS 
       14.99        16.57        19.79        23.24        24.79         1.55 
TCGA-AC-A62V TCGA-AC-A62X TCGA-AC-A6IV TCGA-AC-A6IX TCGA-AC-A6NO TCGA-AC-A7VB 
       11.44        13.71        18.67        12.26         1.68         8.22 
TCGA-AC-A7VC TCGA-AC-A8OP TCGA-AC-A8OQ TCGA-AC-A8OR TCGA-AN-A03X TCGA-AN-A041 
        0.03        20.19         1.12         1.32         0.33         0.23 
TCGA-AN-A046 TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AL 
        0.33         0.62         2.96         1.71         9.96         6.51 
TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FJ 
        0.33         0.33         0.33         6.44         5.65         7.96 
TCGA-AN-A0FL TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FZ 
        7.59         7.17         6.28         7.04         0.33         0.33 
TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS 
        0.33         0.33        12.33         0.30         0.33         0.33 
TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AN-A0XV TCGA-AO-A03N TCGA-AO-A03R TCGA-AO-A03T 
        0.33         0.33         5.33        66.77        68.75        47.87 
TCGA-AO-A03U TCGA-AO-A0J3 TCGA-AO-A0J4 TCGA-AO-A0J5 TCGA-AO-A0J6 TCGA-AO-A0J8 
       58.95        21.40        52.18        26.04        37.48        22.36 
TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JC TCGA-AO-A0JD TCGA-AO-A0JF 
       53.03        21.53        50.70        50.86        72.00        21.37 
TCGA-AO-A0JG TCGA-AO-A0JI TCGA-AO-A0JJ TCGA-AO-A0JL TCGA-AO-A0JM TCGA-AO-A125 
       26.24        50.24        62.04        55.33        71.80        99.25 
TCGA-AO-A126 TCGA-AO-A129 TCGA-AO-A12E TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP 
      108.72       108.03        57.30        28.37        14.73        82.62 
TCGA-AO-A1KT TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A0Y5 TCGA-AQ-A1H2 
       17.79        24.79        26.93       130.09         5.65        15.62 
TCGA-AQ-A1H3 TCGA-AQ-A7U7 TCGA-AR-A0TP TCGA-AR-A0TR TCGA-AR-A0TS TCGA-AR-A0TV 
       32.52        19.20       111.32         5.26        74.79        42.35 
TCGA-AR-A0TX TCGA-AR-A0TY TCGA-AR-A0TZ TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A0U2 
       64.83        55.86       107.24        65.36       101.95        83.87 
TCGA-AR-A0U3 TCGA-AR-A0U4 TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AK 
      114.02        85.97        75.55        61.84        52.77        51.25 
TCGA-AR-A1AL TCGA-AR-A1AM TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AQ 
       48.82        76.11        43.73        43.56        39.98        43.07 
TCGA-AR-A1AR TCGA-AR-A1AS TCGA-AR-A1AU TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24M 
       17.23        37.81        76.21        33.73       160.90        96.89 
TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24R TCGA-AR-A24S TCGA-AR-A24T 
       78.51        84.20         2.76        87.22        97.84        76.01 
TCGA-AR-A24U TCGA-AR-A24X TCGA-AR-A251 TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A256 
       53.36        83.77        78.48        73.18        72.76        93.83 
TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LL TCGA-AR-A2LM 
      143.21        20.25        62.86        54.21        66.15        52.11 
TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 
       38.17        39.39        16.04        20.45        10.59        77.62 
TCGA-B6-A0I5 TCGA-B6-A0I9 TCGA-B6-A0IA TCGA-B6-A0IB TCGA-B6-A0IC TCGA-B6-A0IE 
      149.59        12.13       220.90       129.57        50.70        65.72 
TCGA-B6-A0IG TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IP TCGA-B6-A0RE TCGA-B6-A0RG 
      146.50        18.77       126.12       110.93       211.56        68.45 
TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RL TCGA-B6-A0RM TCGA-B6-A0RN TCGA-B6-A0RO 
      189.01       234.28        81.17        78.02       172.96       162.05 
TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT 
      102.77       140.48        89.46       157.41        97.48       188.68 
TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WY TCGA-B6-A0X0 TCGA-B6-A0X1 
       79.63        18.35        21.47       113.79       129.70       186.48 
TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KF TCGA-B6-A1KN TCGA-B6-A2IU 
       28.27        68.94        58.88       101.52       139.17       170.17 
TCGA-B6-A402 TCGA-B6-A408 TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AV TCGA-BH-A0AY 
       74.99        68.12       103.63        71.15        59.84        25.55 
TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B2 TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0B7 
       28.50        46.95        40.83        39.16        48.36        56.98 
TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BF TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BQ 
       32.02        18.21        25.71        61.68        35.67        27.19 
TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BV TCGA-BH-A0BW TCGA-BH-A0BZ TCGA-BH-A0C3 
       53.69        53.95        49.94        11.67        49.05        48.13 
TCGA-BH-A0C7 TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DK 
       42.90        31.17        23.44        38.01        22.13        13.91 
TCGA-BH-A0DL TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV 
       48.23        15.65         3.22         2.56        38.47        67.86 
TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E7 TCGA-BH-A0EA 
       47.41        16.27        15.68        14.30        44.81        32.58 
TCGA-BH-A0EB TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0GZ TCGA-BH-A0H3 TCGA-BH-A0H5 
       24.49        31.00        24.43        10.78        37.78        35.51 
TCGA-BH-A0H6 TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HI TCGA-BH-A0HK 
       24.56        41.00        52.96        26.50        20.38         5.85 
TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0HY 
        2.50        13.61        12.89        51.32        27.25        50.79 
TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A0WA 
        5.59        23.93        24.95        42.35        44.81        23.05 
TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18M TCGA-BH-A18P 
        8.81         2.01         7.23        20.12        72.56        30.28 
TCGA-BH-A18R TCGA-BH-A18S TCGA-BH-A18T TCGA-BH-A18V TCGA-BH-A1ET TCGA-BH-A1EU 
       37.55        66.05         7.36        51.16        82.85        42.28 
TCGA-BH-A1EX TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F2 TCGA-BH-A1F5 TCGA-BH-A1F6 
       49.58        17.69        25.81        31.53        89.16        97.48 
TCGA-BH-A1F8 TCGA-BH-A1FB TCGA-BH-A1FC TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH 
       24.66       120.62       114.15        74.73       122.89        36.92 
TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A201 TCGA-BH-A202 
       63.35        55.00       144.59        72.07        28.14        26.14 
TCGA-BH-A204 TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42T 
       83.31       130.16        10.65         6.44        20.12        10.52 
TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-BH-A6R8 TCGA-BH-A8FY 
      109.28         8.94        18.64        23.51         9.63         9.70 
TCGA-BH-A8FZ TCGA-BH-A8G0 TCGA-BH-AB28 TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12O 
       18.87        21.76         9.44        11.77        11.77        12.66 
TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12U TCGA-C8-A12X TCGA-C8-A12Z TCGA-C8-A131 
       11.77        12.66        12.66        12.66         0.39         2.24 
TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A135 TCGA-C8-A137 TCGA-C8-A138 TCGA-C8-A1HE 
        1.87         1.12         1.05         4.11         4.08        12.33 
TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HJ TCGA-C8-A1HL TCGA-C8-A26V 
       10.92        11.34        11.28         0.16        10.42         0.30 
TCGA-C8-A26X TCGA-C8-A26Y TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A3M7 
        0.36         0.43         9.50        12.20         0.99         0.03 
TCGA-C8-A3M8 TCGA-C8-A8HP TCGA-C8-A8HQ TCGA-C8-A8HR TCGA-C8-A9FZ TCGA-D8-A13Y 
        0.23        13.02        12.49        13.41        19.46        11.90 
TCGA-D8-A13Z TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A146 TCGA-D8-A147 TCGA-D8-A1J9 
       20.88        13.25        20.58        21.14        19.20        17.49 
TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JG 
       16.50        18.71        15.78        18.15        18.90        12.03 
TCGA-D8-A1JI TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JM TCGA-D8-A1JS TCGA-D8-A1JT 
       18.97        20.09        20.12        19.40        12.20        13.32 
TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC 
       16.73        25.74        23.90        27.58        18.15        12.39 
TCGA-D8-A1XF TCGA-D8-A1XG TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XR 
       15.22        14.73        19.92        17.69        15.55        15.85 
TCGA-D8-A1XS TCGA-D8-A1XT TCGA-D8-A1XV TCGA-D8-A1XY TCGA-D8-A1Y0 TCGA-D8-A1Y1 
       16.31         6.35        15.16        16.54        15.52         9.93 
TCGA-D8-A1Y2 TCGA-D8-A1Y3 TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27G TCGA-D8-A27H 
       14.24        14.14        17.42        16.04        13.45        13.05 
TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27P TCGA-D8-A27T 
       14.43         9.44        16.41        13.48         0.76        13.08 
TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-D8-A73U TCGA-D8-A73W TCGA-D8-A73X 
       33.37        18.51        21.67        16.18         8.02        12.10 
TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10E 
       43.00        34.42        27.52        46.59        40.41        28.44 
TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14R TCGA-E2-A14S 
       28.87        47.15        44.68        40.96        38.60        33.17 
TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14W TCGA-E2-A14Z TCGA-E2-A150 
       33.30        43.33        34.26        32.02        18.51        25.41 
TCGA-E2-A154 TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A158 TCGA-E2-A15A TCGA-E2-A15C 
       19.43        21.04        23.87        14.79        23.34        22.82 
TCGA-E2-A15D TCGA-E2-A15E TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15I TCGA-E2-A15J 
       17.29        20.71        18.21        12.92        17.42        19.40 
TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15O TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A15T 
        9.04        20.58        13.02        19.56        17.06        14.99 
TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BC 
       53.62        53.03        33.01        32.35        28.50        16.47 
TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1IH TCGA-E2-A1IJ 
       17.10        38.30        37.41        32.78        33.73        28.44 
TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L8 
       22.65         3.88        11.08        54.18        27.42        39.62 
TCGA-E2-A1L9 TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LH TCGA-E2-A1LI 
       19.66        24.59        40.47        28.90       106.75       102.61 
TCGA-E2-A1LK TCGA-E2-A1LL TCGA-E2-A2P5 TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z 
        8.75        43.04        16.93         5.52        15.72         8.28 
TCGA-E2-A570 TCGA-E2-A573 TCGA-E2-A574 TCGA-E2-A9RU TCGA-E9-A1N3 TCGA-E9-A1N4 
       30.61        34.92        26.56        12.85        34.82        32.88 
TCGA-E9-A1N5 TCGA-E9-A1N6 TCGA-E9-A1NA TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NE 
       36.82        13.48        36.56        39.55        12.59        35.77 
TCGA-E9-A1NF TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R3 
       35.24         9.86        11.90        28.27        34.95         2.56 
TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R7 TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RE 
        6.12         3.02        21.21        32.09        40.24        34.65 
TCGA-E9-A1RG TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A 
       21.27        34.13        32.05        12.53        13.32        39.09 
TCGA-E9-A22G TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A244 TCGA-E9-A247 TCGA-E9-A248 
       23.51        20.71        17.06         0.69        27.22         1.94 
TCGA-E9-A24A TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3QA TCGA-E9-A54X 
       24.56         0.76        26.07        18.41        30.18        12.33 
TCGA-E9-A54Y TCGA-E9-A5UO TCGA-E9-A6HE TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY 
       23.84        13.81        15.39        12.20        39.72         8.48 
TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J5 TCGA-EW-A1OW 
       18.21        18.90        13.25        16.57        15.68        22.82 
TCGA-EW-A1OX TCGA-EW-A1OY TCGA-EW-A1OZ TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P3 
       29.95        29.85        40.41        41.13        39.78        52.96 
TCGA-EW-A1P5 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A1PE 
       23.11        18.48        30.08        19.99         6.15        10.52 
TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A2FW 
       34.55        19.96        55.00        52.73        25.91        22.09 
TCGA-EW-A3E8 TCGA-EW-A3U0 TCGA-EW-A424 TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2DA 
       34.03        17.49        23.51         7.40       109.87       216.76 
TCGA-GM-A2DB TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL 
       79.10        70.85        72.10        85.15        86.96       115.69 
TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A2DO TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG 
      106.06       101.62        85.35       110.50        38.20        43.73 
TCGA-GM-A3XL TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2NL 
       69.30        66.38        72.03        13.55        18.12         2.60 
TCGA-HN-A2OB TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LD-A66U TCGA-LD-A74U TCGA-LD-A7W5 
       62.43        11.84        11.57        21.24        13.22         7.10 
TCGA-LD-A7W6 TCGA-LD-A9QF TCGA-LL-A440 TCGA-LL-A441 TCGA-LL-A442 TCGA-LL-A50Y 
       13.28        10.62        24.95        11.44        10.95        25.05 
TCGA-LL-A5YL TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LL-A6FP TCGA-LL-A6FR 
       17.06        15.32        14.70        14.47        22.26        16.08 
TCGA-LL-A73Z TCGA-LL-A740 TCGA-LL-A7T0 TCGA-LL-A8F5 TCGA-LQ-A4E4 TCGA-OK-A5Q2 
        7.46        14.50        12.36        14.73        27.91         2.10 
TCGA-OL-A5D6 TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RU TCGA-OL-A5RV 
       36.30        58.52        31.99        58.62        40.08        34.92 
TCGA-OL-A5RW TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66H 
       36.36        28.87        24.72        22.32        20.38        26.70 
TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66K TCGA-OL-A66L TCGA-OL-A66N TCGA-OL-A66O 
       23.47        65.62        41.92        42.77        26.04        17.36 
TCGA-OL-A66P TCGA-OL-A6VO TCGA-OL-A6VQ TCGA-OL-A6VR TCGA-PE-A5DD TCGA-PE-A5DE 
       14.07        28.21        19.73        40.11        64.21        86.96 
TCGA-PL-A8LX TCGA-PL-A8LY TCGA-S3-AA0Z TCGA-S3-AA11 TCGA-S3-AA12 TCGA-S3-AA14 
        0.16         0.26        16.80        13.84        15.35        14.96 
TCGA-S3-AA15 TCGA-S3-AA17 TCGA-UU-A93S TCGA-WT-AB41 TCGA-WT-AB44 TCGA-XX-A899 
       13.84        13.94         3.81        52.96        29.03        15.35 
TCGA-XX-A89A TCGA-Z7-A8R5 TCGA-Z7-A8R6 
       16.04       108.07       107.05 

  AMP PEAK 28(19Q13.42) MUTATED AMP PEAK 28(19Q13.42) WILD-TYPE 
                           0.03                            0.03 
  AMP PEAK 28(19Q13.42) MUTATED AMP PEAK 28(19Q13.42) WILD-TYPE 
                         176.98                          234.28 
  AMP PEAK 28(19Q13.42) MUTATED AMP PEAK 28(19Q13.42) WILD-TYPE 
                          24.72                           24.49 
[1] "0.0 - 177.0 (24.7)" "0.0 - 234.3 (24.5)"
[1] "hr=" "1.1"
D28V2, continuous
                                 vv
clus                              STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  AMP PEAK 28(19Q13.42) MUTATED        23       19        2        0       100
  AMP PEAK 28(19Q13.42) WILD-TYPE      66       62        6        3       253
                                 vv
clus                              STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  AMP PEAK 28(19Q13.42) MUTATED          60         0         37          9
  AMP PEAK 28(19Q13.42) WILD-TYPE       185         2        113         20
                                 vv
clus                              STAGE IIIC STAGE IV STAGE TIS STAGE X
  AMP PEAK 28(19Q13.42) MUTATED           16        3         0       2
  AMP PEAK 28(19Q13.42) WILD-TYPE         47       17         1      11
D28V3, multiclass
            clus
vv           AMP PEAK 28(19Q13.42) MUTATED AMP PEAK 28(19Q13.42) WILD-TYPE
  STAGE I                               23                              66
  STAGE IA                              19                              62
  STAGE IB                               2                               6
  STAGE II                               0                               3
  STAGE IIA                            100                             253
  STAGE IIB                             60                             185
  STAGE III                              0                               2
  STAGE IIIA                            37                             113
  STAGE IIIB                             9                              20
  STAGE IIIC                            16                              47
  STAGE IV                               3                              17
  STAGE TIS                              0                               1
  STAGE X                                2                              11
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                               T1  T2  T3  T4
  AMP PEAK 28(19Q13.42) MUTATED    63 170  28  10
  AMP PEAK 28(19Q13.42) WILD-TYPE 209 446 102  30
D28V4, multiclass
    clus
vv   AMP PEAK 28(19Q13.42) MUTATED AMP PEAK 28(19Q13.42) WILD-TYPE
  T1                            63                             209
  T2                           170                             446
  T3                            28                             102
  T4                            10                              30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                               N0  N1  N2  N3
  AMP PEAK 28(19Q13.42) MUTATED   137  82  30  18
  AMP PEAK 28(19Q13.42) WILD-TYPE 364 268  87  57
D28V5, multiclass
    clus
vv   AMP PEAK 28(19Q13.42) MUTATED AMP PEAK 28(19Q13.42) WILD-TYPE
  N0                           137                             364
  N1                            82                             268
  N2                            30                              87
  N3                            18                              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D28V6, binary
                                 cls
clus                                0   1
  AMP PEAK 28(19Q13.42) MUTATED   243   3
  AMP PEAK 28(19Q13.42) WILD-TYPE 636  18
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 28(19Q13.42) MUTATED    243    3
  AMP PEAK 28(19Q13.42) WILD-TYPE  636   18
   clus
vv  AMP PEAK 28(19Q13.42) MUTATED AMP PEAK 28(19Q13.42) WILD-TYPE
  0                           243                             636
  1                             3                              18
[1] 2 2
[1] FALSE
D28V7, binary
                                 cls
clus                                0   1
  AMP PEAK 28(19Q13.42) MUTATED   266   5
  AMP PEAK 28(19Q13.42) WILD-TYPE 785   6
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 28(19Q13.42) MUTATED    266    5
  AMP PEAK 28(19Q13.42) WILD-TYPE  785    6
        clus
vv       AMP PEAK 28(19Q13.42) MUTATED AMP PEAK 28(19Q13.42) WILD-TYPE
  FEMALE                           266                             785
  MALE                               5                               6
[1] 2 2
[1] FALSE
                                 vv
clus                              INFILTRATING CARCINOMA NOS
  AMP PEAK 28(19Q13.42) MUTATED                            1
  AMP PEAK 28(19Q13.42) WILD-TYPE                          0
                                 vv
clus                              INFILTRATING DUCTAL CARCINOMA
  AMP PEAK 28(19Q13.42) MUTATED                             213
  AMP PEAK 28(19Q13.42) WILD-TYPE                           550
                                 vv
clus                              INFILTRATING LOBULAR CARCINOMA
  AMP PEAK 28(19Q13.42) MUTATED                               33
  AMP PEAK 28(19Q13.42) WILD-TYPE                            159
                                 vv
clus                              MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  AMP PEAK 28(19Q13.42) MUTATED                     2                     2
  AMP PEAK 28(19Q13.42) WILD-TYPE                   4                     2
                                 vv
clus                              MIXED HISTOLOGY (PLEASE SPECIFY)
  AMP PEAK 28(19Q13.42) MUTATED                                  5
  AMP PEAK 28(19Q13.42) WILD-TYPE                               25
                                 vv
clus                              MUCINOUS CARCINOMA OTHER  SPECIFY
  AMP PEAK 28(19Q13.42) MUTATED                    2             13
  AMP PEAK 28(19Q13.42) WILD-TYPE                 15             35
D28V8, multiclass
                                  clus
vv                                 AMP PEAK 28(19Q13.42) MUTATED
  INFILTRATING CARCINOMA NOS                                   1
  INFILTRATING DUCTAL CARCINOMA                              213
  INFILTRATING LOBULAR CARCINOMA                              33
  MEDULLARY CARCINOMA                                          2
  METAPLASTIC CARCINOMA                                        2
  MIXED HISTOLOGY (PLEASE SPECIFY)                             5
  MUCINOUS CARCINOMA                                           2
  OTHER  SPECIFY                                              13
                                  clus
vv                                 AMP PEAK 28(19Q13.42) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                     0
  INFILTRATING DUCTAL CARCINOMA                                550
  INFILTRATING LOBULAR CARCINOMA                               159
  MEDULLARY CARCINOMA                                            4
  METAPLASTIC CARCINOMA                                          2
  MIXED HISTOLOGY (PLEASE SPECIFY)                              25
  MUCINOUS CARCINOMA                                            15
  OTHER  SPECIFY                                                35
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D28V9, binary
                                 cls
clus                                0   1
  AMP PEAK 28(19Q13.42) MUTATED    83 188
  AMP PEAK 28(19Q13.42) WILD-TYPE 205 586
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 28(19Q13.42) MUTATED     83  188
  AMP PEAK 28(19Q13.42) WILD-TYPE  205  586
     clus
vv    AMP PEAK 28(19Q13.42) MUTATED AMP PEAK 28(19Q13.42) WILD-TYPE
  NO                             83                             205
  YES                           188                             586
[1] 2 2
[1] FALSE
D28V10, continuous
                                 vv
clus                              AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK 28(19Q13.42) MUTATED                                  0    16
  AMP PEAK 28(19Q13.42) WILD-TYPE                                1    44
                                 vv
clus                              BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 28(19Q13.42) MUTATED                          39   194
  AMP PEAK 28(19Q13.42) WILD-TYPE                       131   542
D28V11, multiclass
                                  clus
vv                                 AMP PEAK 28(19Q13.42) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                             0
  ASIAN                                                       16
  BLACK OR AFRICAN AMERICAN                                   39
  WHITE                                                      194
                                  clus
vv                                 AMP PEAK 28(19Q13.42) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                               1
  ASIAN                                                         44
  BLACK OR AFRICAN AMERICAN                                    131
  WHITE                                                        542
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D28V12, binary
                                 cls
clus                                0   1
  AMP PEAK 28(19Q13.42) MUTATED    11 214
  AMP PEAK 28(19Q13.42) WILD-TYPE  27 644
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 28(19Q13.42) MUTATED     11  214
  AMP PEAK 28(19Q13.42) WILD-TYPE   27  644
                        clus
vv                       AMP PEAK 28(19Q13.42) MUTATED
  HISPANIC OR LATINO                                11
  NOT HISPANIC OR LATINO                           214
                        clus
vv                       AMP PEAK 28(19Q13.42) WILD-TYPE
  HISPANIC OR LATINO                                  27
  NOT HISPANIC OR LATINO                             644
[1] 2 2
[1] FALSE

Clustering(29) Variable = AMP PEAK 29(20Q13.2) MUTATION ANALYSIS
D29V1, survival
                                sevent
clus2                              0   1
  AMP PEAK 29(20Q13.2) MUTATED   467  65
  AMP PEAK 29(20Q13.2) WILD-TYPE 449  63
  AMP PEAK 29(20Q13.2) MUTATED AMP PEAK 29(20Q13.2) WILD-TYPE 
                           532                            512 
  AMP PEAK 29(20Q13.2) MUTATED AMP PEAK 29(20Q13.2) WILD-TYPE 
                            65                             63 
$`AMP PEAK 29(20Q13.2) MUTATED`
TCGA-3C-AAAU TCGA-3C-AALI TCGA-3C-AALJ TCGA-5T-A9QA TCGA-A1-A0SD TCGA-A1-A0SF 
      129.14       131.67        42.81         9.96        14.37        48.10 
TCGA-A1-A0SG TCGA-A1-A0SI TCGA-A1-A0SJ TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SN 
       14.27        20.88        13.68        31.79         7.96        39.32 
TCGA-A1-A0SO TCGA-A1-A0SP TCGA-A1-A0SQ TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04W 
       28.01        19.20        18.21       121.94        73.84       101.98 
TCGA-A2-A04X TCGA-A2-A04Y TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CS TCGA-A2-A0CT 
       55.43        36.13        99.12        24.79        75.55        75.25 
TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0CX TCGA-A2-A0D0 TCGA-A2-A0D2 
        5.19        98.99       107.93        56.81        67.33        33.76 
TCGA-A2-A0D4 TCGA-A2-A0EQ TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EY 
       25.22        79.76        35.05        34.29        31.82        63.29 
TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0SX TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T7 
       27.12        44.88        50.43         8.38        49.84        20.75 
TCGA-A2-A0YD TCGA-A2-A0YE TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A0YJ TCGA-A2-A0YT 
       25.28        18.21        21.90        21.67        18.61        23.77 
TCGA-A2-A1FW TCGA-A2-A1FX TCGA-A2-A1G0 TCGA-A2-A1G1 TCGA-A2-A25B TCGA-A2-A25E 
       17.36        60.72        20.25        19.20        42.44       105.34 
TCGA-A2-A3KC TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XX TCGA-A2-A3XY TCGA-A2-A4RX 
       20.88        33.93        83.01        47.31        34.98        24.39 
TCGA-A2-A4S2 TCGA-A7-A0CD TCGA-A7-A0CJ TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DB 
       21.14        38.30        30.61        37.45        35.67        33.11 
TCGA-A7-A0DC TCGA-A7-A13D TCGA-A7-A13E TCGA-A7-A13F TCGA-A7-A26G TCGA-A7-A26J 
       29.79        31.73        20.19        25.15        23.74        20.61 
TCGA-A7-A2KD TCGA-A7-A425 TCGA-A7-A4SA TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF 
       22.32        14.70        14.93        14.50        21.17        17.92 
TCGA-A7-A56D TCGA-A7-A5ZV TCGA-A7-A6VV TCGA-A8-A06O TCGA-A8-A06Q TCGA-A8-A06R 
       14.73        12.10        10.29        13.02         1.02        17.98 
TCGA-A8-A06U TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A079 
       29.03        26.01         1.02        17.03        53.98         9.01 
TCGA-A8-A07G TCGA-A8-A07L TCGA-A8-A07P TCGA-A8-A07R TCGA-A8-A07U TCGA-A8-A07W 
       18.97        32.05        10.98         8.98        24.99         9.99 
TCGA-A8-A07Z TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08B TCGA-A8-A08F TCGA-A8-A08G 
       45.07        36.95        13.02        38.01        33.01        19.96 
TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08P TCGA-A8-A08R TCGA-A8-A08S 
       12.00        37.05         9.99        31.00         0.99        33.01 
TCGA-A8-A08X TCGA-A8-A091 TCGA-A8-A092 TCGA-A8-A093 TCGA-A8-A095 TCGA-A8-A097 
       43.00        33.01        30.97        17.95        41.98        12.00 
TCGA-A8-A09A TCGA-A8-A09C TCGA-A8-A09D TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K 
        9.99         1.02        50.04        49.05        45.07        29.98 
TCGA-A8-A09M TCGA-A8-A09N TCGA-A8-A09R TCGA-A8-A0A1 TCGA-A8-A0A7 TCGA-A8-A0A9 
       33.07         1.02         8.98        12.00         0.99        27.02 
TCGA-AC-A23C TCGA-AC-A23G TCGA-AC-A23H TCGA-AC-A2BM TCGA-AC-A2FM TCGA-AC-A2FO 
        0.95        10.85         5.72        99.35        26.04        50.70 
TCGA-AC-A2QH TCGA-AC-A2QJ TCGA-AC-A3W5 TCGA-AC-A5XS TCGA-AC-A62V TCGA-AC-A62Y 
       33.04         2.27        16.57         1.55        11.44        17.42 
TCGA-AC-A6IW TCGA-AC-A6NO TCGA-AC-A8OP TCGA-AC-A8OQ TCGA-AN-A03X TCGA-AN-A03Y 
       13.58         1.68        20.19         1.12         0.33         0.33 
TCGA-AN-A041 TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AM 
        0.23         2.96         1.78         1.71         9.96         0.16 
TCGA-AN-A0AS TCGA-AN-A0FD TCGA-AN-A0FT TCGA-AN-A0FW TCGA-AN-A0FY TCGA-AN-A0FZ 
        0.33         6.44         7.04         0.36         0.33         0.33 
TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AO-A03L TCGA-AO-A03M 
        0.33         0.33        12.33         0.30        80.28        61.35 
TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03T TCGA-AO-A03V TCGA-AO-A0J2 
       66.77        81.63        95.70        47.87        29.13        32.78 
TCGA-AO-A0J7 TCGA-AO-A0J9 TCGA-AO-A0JB TCGA-AO-A0JD TCGA-AO-A0JE TCGA-AO-A0JI 
       20.32        53.03        50.70        72.00        76.77        50.24 
TCGA-AO-A0JL TCGA-AO-A0JM TCGA-AO-A128 TCGA-AO-A129 TCGA-AO-A12A TCGA-AO-A12B 
       55.33        71.80       106.78       108.03        90.58        98.27 
TCGA-AO-A12E TCGA-AO-A12F TCGA-AO-A1KP TCGA-AO-A1KQ TCGA-AO-A1KS TCGA-AO-A1KT 
       57.30        48.36        82.62        61.87         0.53        17.79 
TCGA-AQ-A04H TCGA-AQ-A04L TCGA-AQ-A0Y5 TCGA-AQ-A1H2 TCGA-AQ-A54O TCGA-AQ-A7U7 
       24.79       130.09         5.65        15.62        32.91        19.20 
TCGA-AR-A0TQ TCGA-AR-A0TT TCGA-AR-A0TV TCGA-AR-A0TW TCGA-AR-A0TX TCGA-AR-A0TY 
       73.64        86.66        42.35        98.93        64.83        55.86 
TCGA-AR-A0TZ TCGA-AR-A0U1 TCGA-AR-A0U2 TCGA-AR-A1AI TCGA-AR-A1AK TCGA-AR-A1AN 
      107.24       101.95        83.87        61.84        51.25        43.73 
TCGA-AR-A1AP TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A1AY TCGA-AR-A24H 
       39.98        76.21        61.28        63.62        33.73       160.90 
TCGA-AR-A24L TCGA-AR-A24Q TCGA-AR-A24R TCGA-AR-A24S TCGA-AR-A24V TCGA-AR-A24W 
       94.22       104.28        87.22        97.84        85.35        50.96 
TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A251 TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A255 
       79.00        89.00        78.48        73.18        72.76        58.92 
TCGA-AR-A256 TCGA-AR-A2LK TCGA-AR-A2LL TCGA-AR-A2LO TCGA-AR-A2LR TCGA-AR-A5QM 
       93.83        54.21        66.15        39.39        20.38        54.74 
TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0I9 TCGA-B6-A0IB TCGA-B6-A0IE 
       77.62       143.38       149.59        12.13       129.57        65.72 
TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IO TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RG 
      112.37       176.98       110.14       140.88       211.56        68.45 
TCGA-B6-A0RH TCGA-B6-A0RL TCGA-B6-A0RO TCGA-B6-A0RU TCGA-B6-A0WV TCGA-B6-A0WY 
      189.01        81.17       162.05       131.21        79.63       113.79 
TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A1KN TCGA-B6-A401 TCGA-B6-A402 
       43.59       101.52        73.51       139.17        85.35        74.99 
TCGA-B6-A408 TCGA-B6-A40B TCGA-BH-A0AU TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0B3 
       68.12       103.63        24.53        20.45        25.55        39.55 
TCGA-BH-A0B4 TCGA-BH-A0B6 TCGA-BH-A0BA TCGA-BH-A0BF TCGA-BH-A0BL TCGA-BH-A0BP 
       39.16        56.94        37.22        25.71        44.05        48.69 
TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0DD 
       45.57        49.94        49.05        41.75        44.02        45.83 
TCGA-BH-A0DG TCGA-BH-A0DL TCGA-BH-A0DQ TCGA-BH-A0E0 TCGA-BH-A0E2 TCGA-BH-A0E9 
       23.44        48.23         3.22         4.41        14.30        46.19 
TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0H7 TCGA-BH-A0H9 TCGA-BH-A0HB 
       31.00        24.43        30.35        23.08        41.00        26.50 
TCGA-BH-A0HI TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0RX 
       20.38        36.85        12.89        27.25        50.79         5.59 
TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18N TCGA-BH-A18Q 
       42.35        44.81        90.84        26.66        37.74        55.63 
TCGA-BH-A18R TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1EN TCGA-BH-A1EO 
       37.55         7.36        51.39        51.16        69.93        91.99 
TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1EX TCGA-BH-A1F2 TCGA-BH-A1F6 
       42.28        12.00        55.69        49.58        31.53        97.48 
TCGA-BH-A1F8 TCGA-BH-A1FE TCGA-BH-A1FM TCGA-BH-A1FN TCGA-BH-A202 TCGA-BH-A204 
       24.66        74.73        45.63        72.07        26.14        83.31 
TCGA-BH-A208 TCGA-BH-A28Q TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-BH-A6R8 TCGA-BH-A6R9 
       57.83         6.44        18.64        23.51         9.63         5.26 
TCGA-C8-A12L TCGA-C8-A12M TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12U 
       11.93        11.77        12.66        11.77        12.66        12.66 
TCGA-C8-A12W TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A138 
       12.66         3.16         2.24         1.87         1.12         4.08 
TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A26Y TCGA-C8-A26Z 
       11.34        11.28         2.30         3.25         0.43         8.28 
TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A3M8 TCGA-C8-A8HP 
        9.67         9.53         9.50        12.20         0.23        13.02 
TCGA-C8-A8HR TCGA-D8-A13Y TCGA-D8-A13Z TCGA-D8-A140 TCGA-D8-A142 TCGA-D8-A143 
       13.41        11.90        20.88        13.25        13.97        14.17 
TCGA-D8-A145 TCGA-D8-A146 TCGA-D8-A147 TCGA-D8-A1J8 TCGA-D8-A1JB TCGA-D8-A1JC 
       13.48        21.14        19.20        14.17        18.71        15.78 
TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JH TCGA-D8-A1JI 
       18.15        18.90        12.03        12.03        14.01        18.97 
TCGA-D8-A1JK TCGA-D8-A1JP TCGA-D8-A1JT TCGA-D8-A1X5 TCGA-D8-A1X9 TCGA-D8-A1XA 
       20.12        21.01        13.32        18.58        23.90        27.58 
TCGA-D8-A1XB TCGA-D8-A1XD TCGA-D8-A1XF TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XL 
       18.15        17.16        15.22        21.83        14.50        19.92 
TCGA-D8-A1XQ TCGA-D8-A1XS TCGA-D8-A1XU TCGA-D8-A1XW TCGA-D8-A1XY TCGA-D8-A1XZ 
       16.41        16.31        12.99        12.66        16.54        15.32 
TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A27H TCGA-D8-A27I TCGA-D8-A27L TCGA-D8-A27R 
       15.52         9.93        13.05        14.43        16.41        10.09 
TCGA-D8-A27W TCGA-D8-A73U TCGA-D8-A73X TCGA-E2-A105 TCGA-E2-A109 TCGA-E2-A10B 
       12.26        16.18        12.10        43.00        46.59        37.51 
TCGA-E2-A10C TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14R TCGA-E2-A14S TCGA-E2-A14T 
       40.11        44.68        40.96        38.60        33.17        33.30 
TCGA-E2-A14V TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A153 
       34.26        31.96        28.60        25.41        27.12        23.24 
TCGA-E2-A154 TCGA-E2-A159 TCGA-E2-A15A TCGA-E2-A15C TCGA-E2-A15E TCGA-E2-A15F 
       19.43        25.05        23.34        22.82        20.71        21.63 
TCGA-E2-A15H TCGA-E2-A15K TCGA-E2-A15M TCGA-E2-A15O TCGA-E2-A15R TCGA-E2-A15S 
       12.92         9.04        11.05        13.02        17.06        14.07 
TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IH TCGA-E2-A1II 
       60.53        53.62        17.10        38.30        33.73        33.70 
TCGA-E2-A1IN TCGA-E2-A1IO TCGA-E2-A1L7 TCGA-E2-A1L9 TCGA-E2-A1LH TCGA-E2-A1LI 
       22.19        20.98        27.42        19.66       106.75       102.61 
TCGA-E2-A1LK TCGA-E2-A1LL TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A573 TCGA-E2-A574 
        8.75        43.04         8.28        30.61        34.92        26.56 
TCGA-E2-A576 TCGA-E2-A9RU TCGA-E9-A1N5 TCGA-E9-A1N6 TCGA-E9-A1N8 TCGA-E9-A1N9 
       34.29        12.85        36.82        13.48        12.00        13.12 
TCGA-E9-A1NA TCGA-E9-A1NE TCGA-E9-A1NF TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R2 
       36.56        35.77        35.24         9.86        11.90        34.95 
TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RA 
        2.56         6.12         3.02         2.76        21.21        32.09 
TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RG TCGA-E9-A1RH 
       32.09        40.24        34.65         6.58        21.27        34.59 
TCGA-E9-A226 TCGA-E9-A229 TCGA-E9-A22B TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A244 
       34.13        13.32        22.75        41.03        12.89         0.69 
TCGA-E9-A247 TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A54Y 
       27.22         1.94         7.13         0.72        29.72        23.84 
TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UP TCGA-EW-A1IY TCGA-EW-A1J3 TCGA-EW-A1J5 
       14.70         0.79        14.40         8.48        16.57        15.68 
TCGA-EW-A1J6 TCGA-EW-A1OY TCGA-EW-A1OZ TCGA-EW-A1P0 TCGA-EW-A1P5 TCGA-EW-A1P6 
       28.77        29.85        40.41        41.13        23.11        18.48 
TCGA-EW-A1PA TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A1PF TCGA-EW-A1PH TCGA-EW-A2FR 
       18.90        19.99         6.15        14.43        19.96        55.00 
TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A2FW TCGA-EW-A3U0 TCGA-EW-A423 TCGA-GI-A2C8 
       52.73        25.91        22.09        17.49        10.16         7.40 
TCGA-GM-A2DC TCGA-GM-A2DD TCGA-GM-A2DF TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A3XL 
       83.34        75.02        70.85        85.15        86.96        69.30 
TCGA-HN-A2NL TCGA-JL-A3YW TCGA-LD-A66U TCGA-LD-A7W5 TCGA-LL-A441 TCGA-LL-A5YM 
        2.60        11.84        21.24         7.10        11.44        15.32 
TCGA-LL-A5YN TCGA-LL-A5YP TCGA-LL-A6FP TCGA-LL-A6FQ TCGA-LL-A6FR TCGA-LL-A73Y 
       14.70        14.79        22.26         2.63        16.08        15.68 
TCGA-LL-A73Z TCGA-LL-A740 TCGA-LL-A7SZ TCGA-LL-A7T0 TCGA-LQ-A4E4 TCGA-MS-A51U 
        7.46        14.50        14.70        12.36        27.91        22.39 
TCGA-OL-A5RZ TCGA-OL-A66I TCGA-OL-A66N TCGA-OL-A66P TCGA-OL-A97C TCGA-PE-A5DC 
       22.32        23.47        26.04        14.07         8.91        47.01 
TCGA-PE-A5DE TCGA-PL-A8LX TCGA-PL-A8LZ TCGA-S3-A6ZF TCGA-S3-A6ZG TCGA-S3-AA10 
       86.96         0.16         9.93        16.50        13.12        15.39 
TCGA-S3-AA17 TCGA-UL-AAZ6 TCGA-W8-A86G TCGA-Z7-A8R6 
       13.94        17.03        11.41       107.05 

$`AMP PEAK 29(20Q13.2) WILD-TYPE`
TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT0 TCGA-5L-AAT1 TCGA-A1-A0SB TCGA-A1-A0SE 
       40.14        11.44        48.56        48.36         8.52        43.43 
TCGA-A1-A0SH TCGA-A2-A04N TCGA-A2-A04P TCGA-A2-A04Q TCGA-A2-A04U TCGA-A2-A04V 
       47.24       104.81        18.02        78.41        87.25        63.12 
TCGA-A2-A0CK TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CQ TCGA-A2-A0CR TCGA-A2-A0D1 
      136.73       114.81        92.48        88.60       107.93        34.55 
TCGA-A2-A0D3 TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0ER 
       61.58       101.72       134.40        80.28       107.61        74.40 
TCGA-A2-A0ES TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SY 
       72.00        61.94        24.72        99.19        54.64        44.28 
TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T4 TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0YC 
       17.52        17.13        20.52        17.46        18.90        32.55 
TCGA-A2-A0YF TCGA-A2-A0YI TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A0YM TCGA-A2-A1FV 
       50.47        49.48        19.33        48.46        31.73        23.47 
TCGA-A2-A1FZ TCGA-A2-A1G4 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25A TCGA-A2-A25C 
       22.45        19.56        16.47        52.47       107.70        17.19 
TCGA-A2-A25D TCGA-A2-A25F TCGA-A2-A3KD TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW 
       18.15        10.59        39.65        29.98        32.75        49.48 
TCGA-A2-A3XZ TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S1 
       50.37        38.37         7.30        21.30        23.21        26.96 
TCGA-A2-A4S3 TCGA-A7-A0CE TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A13G TCGA-A7-A13H 
       21.90        35.31        34.29        35.47        23.61        29.56 
TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26H TCGA-A7-A26I TCGA-A7-A3IY TCGA-A7-A3IZ 
       31.36        24.26        23.80        21.73        11.34        10.59 
TCGA-A7-A3J0 TCGA-A7-A3J1 TCGA-A7-A3RF TCGA-A7-A426 TCGA-A7-A4SB TCGA-A7-A5ZW 
       10.29        11.28        13.41        11.97        13.74        10.72 
TCGA-A7-A5ZX TCGA-A7-A6VW TCGA-A7-A6VX TCGA-A7-A6VY TCGA-A8-A06P TCGA-A8-A06T 
       11.05         9.37        10.42         8.75        13.02        53.06 
TCGA-A8-A06X TCGA-A8-A07B TCGA-A8-A07E TCGA-A8-A07F TCGA-A8-A07I TCGA-A8-A07J 
       31.00        43.00        19.99        18.97        14.01        12.00 
TCGA-A8-A07O TCGA-A8-A07S TCGA-A8-A082 TCGA-A8-A084 TCGA-A8-A08A TCGA-A8-A08C 
        9.99         7.99        18.05        15.06         0.99        28.96 
TCGA-A8-A08O TCGA-A8-A08T TCGA-A8-A08Z TCGA-A8-A099 TCGA-A8-A09B TCGA-A8-A09Q 
       31.00       112.08        40.01         9.99        12.00        25.02 
TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A09X TCGA-A8-A0A2 TCGA-A8-A0A4 
       19.04        15.02         0.99        14.01        19.04        13.02 
TCGA-A8-A0A6 TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23E TCGA-AC-A2B8 TCGA-AC-A2BK 
       21.04        17.03        38.04         2.37         1.48        38.53 
TCGA-AC-A2FB TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2QI TCGA-AC-A3BB 
       40.57        55.43        36.99        38.79         0.92        32.45 
TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3TN TCGA-AC-A3W6 TCGA-AC-A3YI 
       16.31        14.83        22.19        14.99        19.79        23.24 
TCGA-AC-A3YJ TCGA-AC-A62X TCGA-AC-A6IV TCGA-AC-A6IX TCGA-AC-A7VB TCGA-AC-A7VC 
       24.79        13.71        18.67        12.26         8.22         0.03 
TCGA-AC-A8OR TCGA-AC-A8OS TCGA-AN-A046 TCGA-AN-A049 TCGA-AN-A0AK TCGA-AN-A0AL 
        1.32         2.30         0.33         0.62         7.36         6.51 
TCGA-AN-A0AR TCGA-AN-A0AT TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FL 
        0.33         0.33         5.65         7.96         7.00         7.59 
TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FV TCGA-AN-A0FX TCGA-AN-A0XR TCGA-AN-A0XS 
        7.17         6.28         0.33         0.33         0.33         0.33 
TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03R TCGA-AO-A03U 
        0.33         0.33         5.33         5.59        68.75        58.95 
TCGA-AO-A0J3 TCGA-AO-A0J4 TCGA-AO-A0J5 TCGA-AO-A0J6 TCGA-AO-A0J8 TCGA-AO-A0JA 
       21.40        52.18        26.04        37.48        22.36        21.53 
TCGA-AO-A0JC TCGA-AO-A0JF TCGA-AO-A0JG TCGA-AO-A0JJ TCGA-AO-A124 TCGA-AO-A125 
       50.86        21.37        26.24        62.04       102.58        99.25 
TCGA-AO-A126 TCGA-AO-A12D TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KR 
      108.72        64.04        41.62        28.37        14.73        70.39 
TCGA-AQ-A04J TCGA-AQ-A1H3 TCGA-AQ-A54N TCGA-AR-A0TP TCGA-AR-A0TR TCGA-AR-A0TS 
       26.93        32.52         2.56       111.32         5.26        74.79 
TCGA-AR-A0U0 TCGA-AR-A0U3 TCGA-AR-A0U4 TCGA-AR-A1AH TCGA-AR-A1AJ TCGA-AR-A1AL 
       65.36       114.02        85.97        75.55        52.77        48.82 
TCGA-AR-A1AM TCGA-AR-A1AO TCGA-AR-A1AQ TCGA-AR-A1AR TCGA-AR-A1AS TCGA-AR-A1AX 
       76.11        43.56        43.07        17.23        37.81        62.14 
TCGA-AR-A24K TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24T 
       50.89        96.89        78.51        84.20         2.76        76.01 
TCGA-AR-A24U TCGA-AR-A24X TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LM 
       53.36        83.77       143.21        20.25        62.86        52.11 
TCGA-AR-A2LN TCGA-AR-A2LQ TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0IA 
       38.17        40.54        16.04        20.45        10.59       220.90 
TCGA-B6-A0IC TCGA-B6-A0IG TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IP 
       50.70       146.50        18.77       126.12        84.59       110.93 
TCGA-B6-A0RI TCGA-B6-A0RM TCGA-B6-A0RN TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RS 
      234.28        78.02       172.96       102.77       140.48       100.70 
TCGA-B6-A0RT TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WW TCGA-B6-A0WX 
       89.46       157.41        97.48       188.68        18.35        21.47 
TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 
      129.57       129.70       186.48        28.27        68.94        58.88 
TCGA-B6-A2IU TCGA-B6-A40C TCGA-BH-A0AV TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B2 
      170.17        71.15        59.84        28.50        46.95        40.83 
TCGA-BH-A0B5 TCGA-BH-A0B7 TCGA-BH-A0B9 TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BG 
       48.36        56.98        51.68        32.02        18.21        24.85 
TCGA-BH-A0BJ TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS 
       21.70        61.68        35.67        27.19        53.69        53.95 
TCGA-BH-A0BW TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DE TCGA-BH-A0DH TCGA-BH-A0DI 
       11.67        48.13        42.90        31.17        38.01        22.13 
TCGA-BH-A0DK TCGA-BH-A0DO TCGA-BH-A0DP TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV 
       13.91        17.26        15.65         2.56        38.47        67.86 
TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E1 TCGA-BH-A0E6 TCGA-BH-A0E7 TCGA-BH-A0EA 
       47.41        16.27        15.68         9.63        44.81        32.58 
TCGA-BH-A0EB TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 
       24.49        10.78        15.16        37.78        35.51        24.56 
TCGA-BH-A0HA TCGA-BH-A0HK TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HW TCGA-BH-A0W3 
       52.96         5.85         2.50        13.61        51.32        23.93 
TCGA-BH-A0W4 TCGA-BH-A0WA TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J 
       24.95        23.05         8.81         2.01         7.23        20.12 
TCGA-BH-A18M TCGA-BH-A18P TCGA-BH-A18S TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EY 
       72.56        30.28        66.05       113.82        82.85        17.69 
TCGA-BH-A1F0 TCGA-BH-A1F5 TCGA-BH-A1FB TCGA-BH-A1FC TCGA-BH-A1FD TCGA-BH-A1FG 
       25.81        89.16       120.62       114.15        33.17       122.89 
TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A201 
       36.92        63.35        55.00       144.59        72.07        28.14 
TCGA-BH-A203 TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U 
       38.60       130.16        10.65        20.12        10.52       109.28 
TCGA-BH-A42V TCGA-BH-A8FY TCGA-BH-A8FZ TCGA-BH-A8G0 TCGA-BH-AB28 TCGA-C8-A12N 
        8.94         9.70        18.87        21.76         9.44        11.77 
TCGA-C8-A12V TCGA-C8-A12X TCGA-C8-A12Z TCGA-C8-A135 TCGA-C8-A137 TCGA-C8-A1HE 
       12.66        12.66         0.39         1.05         4.11        12.33 
TCGA-C8-A1HF TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HL TCGA-C8-A26V TCGA-C8-A26W 
       10.92         0.16        12.03        10.42         0.30         0.23 
TCGA-C8-A26X TCGA-C8-A275 TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A8HQ TCGA-C8-A9FZ 
        0.36         0.03         0.99         0.03        12.49        19.46 
TCGA-D8-A141 TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JJ TCGA-D8-A1JL TCGA-D8-A1JM 
       20.58        17.49        16.50        20.09        20.09        19.40 
TCGA-D8-A1JN TCGA-D8-A1JS TCGA-D8-A1JU TCGA-D8-A1X6 TCGA-D8-A1X7 TCGA-D8-A1X8 
       20.38        12.20        14.70        17.79        16.73        25.74 
TCGA-D8-A1XC TCGA-D8-A1XG TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XR TCGA-D8-A1XT 
       12.39        14.73        17.69        15.55        15.85         6.35 
TCGA-D8-A1XV TCGA-D8-A1Y2 TCGA-D8-A1Y3 TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27G 
       15.16        14.24        14.14        17.42        16.04        13.45 
TCGA-D8-A27K TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27T TCGA-D8-A27V 
        9.44        13.48         4.80         0.76        13.08        12.53 
TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-D8-A73W TCGA-E2-A107 TCGA-E2-A108 
       33.37        18.51        21.67         8.02        34.42        27.52 
TCGA-E2-A10A TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14Q TCGA-E2-A14U 
       40.41        28.44        28.87        47.15        38.24        43.33 
TCGA-E2-A14W TCGA-E2-A14Z TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A158 TCGA-E2-A15D 
       32.02        18.51        21.04        23.87        14.79        17.29 
TCGA-E2-A15G TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15L TCGA-E2-A15P TCGA-E2-A15T 
       18.21        17.42        19.40        20.58        19.56        14.99 
TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BC TCGA-E2-A1IF 
       53.03        33.01        32.35        28.50        16.47        37.41 
TCGA-E2-A1IG TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IU TCGA-E2-A1L6 
       32.78        28.44        22.65         3.88        11.08        54.18 
TCGA-E2-A1L8 TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LG TCGA-E2-A2P5 
       39.62        24.59        40.47        28.90        18.87        16.93 
TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1NC TCGA-E9-A1ND 
        5.52        15.72        34.82        32.88        39.55        12.59 
TCGA-E9-A1NG TCGA-E9-A1R0 TCGA-E9-A1RD TCGA-E9-A1RI TCGA-E9-A227 TCGA-E9-A228 
       25.84        28.27         1.12        35.64        32.05        12.53 
TCGA-E9-A22A TCGA-E9-A22G TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A24A TCGA-E9-A2JT 
       39.09        23.51        20.71        17.06        24.56         0.76 
TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3QA TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A5UO 
       26.07        18.41        30.18        15.72        12.33        13.81 
TCGA-E9-A6HE TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 
       15.39        12.20        39.72        18.21        18.90        13.25 
TCGA-EW-A1OV TCGA-EW-A1OW TCGA-EW-A1OX TCGA-EW-A1P1 TCGA-EW-A1P3 TCGA-EW-A1P4 
       25.94        22.82        29.95        39.78        52.96        29.82 
TCGA-EW-A1P7 TCGA-EW-A1P8 TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PG TCGA-EW-A3E8 
       30.08         7.86        13.94        10.52        34.55        34.03 
TCGA-EW-A424 TCGA-GI-A2C9 TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DH 
       23.51       109.87        59.57       216.76        79.10        72.10 
TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A2DO TCGA-GM-A3NW TCGA-GM-A3NY 
      115.69       106.06       101.62        85.35       110.50        38.20 
TCGA-GM-A3XG TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2OB 
       43.73        66.38        72.03        13.55        18.12        62.43 
TCGA-JL-A3YX TCGA-LD-A74U TCGA-LD-A7W6 TCGA-LD-A9QF TCGA-LL-A440 TCGA-LL-A442 
       11.57        13.22        13.28        10.62        24.95        10.95 
TCGA-LL-A50Y TCGA-LL-A5YL TCGA-LL-A5YO TCGA-LL-A8F5 TCGA-LL-A9Q3 TCGA-OK-A5Q2 
       25.05        17.06        14.47        14.73        14.07         2.10 
TCGA-OL-A5D6 TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RU TCGA-OL-A5RV 
       36.30        58.52        31.99        58.62        40.08        34.92 
TCGA-OL-A5RW TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5S0 TCGA-OL-A66H TCGA-OL-A66J 
       36.36        28.87        24.72        20.38        26.70        65.62 
TCGA-OL-A66K TCGA-OL-A66L TCGA-OL-A66O TCGA-OL-A6VO TCGA-OL-A6VQ TCGA-OL-A6VR 
       41.92        42.77        17.36        28.21        19.73        40.11 
TCGA-PE-A5DD TCGA-PL-A8LY TCGA-S3-A6ZH TCGA-S3-AA0Z TCGA-S3-AA11 TCGA-S3-AA12 
       64.21         0.26        16.93        16.80        13.84        15.35 
TCGA-S3-AA14 TCGA-S3-AA15 TCGA-UU-A93S TCGA-WT-AB41 TCGA-WT-AB44 TCGA-XX-A899 
       14.96        13.84         3.81        52.96        29.03        15.35 
TCGA-XX-A89A TCGA-Z7-A8R5 
       16.04       108.07 

  AMP PEAK 29(20Q13.2) MUTATED AMP PEAK 29(20Q13.2) WILD-TYPE 
                          0.16                           0.03 
  AMP PEAK 29(20Q13.2) MUTATED AMP PEAK 29(20Q13.2) WILD-TYPE 
                        211.56                         234.28 
  AMP PEAK 29(20Q13.2) MUTATED AMP PEAK 29(20Q13.2) WILD-TYPE 
                        24.595                         24.525 
[1] "0.2 - 211.6 (24.6)" "0.0 - 234.3 (24.5)"
[1] "hr=" "1.1"
D29V2, continuous
                                vv
clus                             STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  AMP PEAK 29(20Q13.2) MUTATED        39       34        3        1       186
  AMP PEAK 29(20Q13.2) WILD-TYPE      50       47        5        2       167
                                vv
clus                             STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  AMP PEAK 29(20Q13.2) MUTATED         128         1         88         15
  AMP PEAK 29(20Q13.2) WILD-TYPE       117         1         62         14
                                vv
clus                             STAGE IIIC STAGE IV STAGE TIS STAGE X
  AMP PEAK 29(20Q13.2) MUTATED           26       11         1       4
  AMP PEAK 29(20Q13.2) WILD-TYPE         37        9         0       9
D29V3, multiclass
            clus
vv           AMP PEAK 29(20Q13.2) MUTATED AMP PEAK 29(20Q13.2) WILD-TYPE
  STAGE I                              39                             50
  STAGE IA                             34                             47
  STAGE IB                              3                              5
  STAGE II                              1                              2
  STAGE IIA                           186                            167
  STAGE IIB                           128                            117
  STAGE III                             1                              1
  STAGE IIIA                           88                             62
  STAGE IIIB                           15                             14
  STAGE IIIC                           26                             37
  STAGE IV                             11                              9
  STAGE TIS                             1                              0
  STAGE X                               4                              9
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              T1  T2  T3  T4
  AMP PEAK 29(20Q13.2) MUTATED   118 341  56  22
  AMP PEAK 29(20Q13.2) WILD-TYPE 154 275  74  18
D29V4, multiclass
    clus
vv   AMP PEAK 29(20Q13.2) MUTATED AMP PEAK 29(20Q13.2) WILD-TYPE
  T1                          118                            154
  T2                          341                            275
  T3                           56                             74
  T4                           22                             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              N0  N1  N2  N3
  AMP PEAK 29(20Q13.2) MUTATED   245 176  77  31
  AMP PEAK 29(20Q13.2) WILD-TYPE 256 174  40  44
D29V5, multiclass
    clus
vv   AMP PEAK 29(20Q13.2) MUTATED AMP PEAK 29(20Q13.2) WILD-TYPE
  N0                          245                            256
  N1                          176                            174
  N2                           77                             40
  N3                           31                             44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D29V6, binary
                                cls
clus                               0   1
  AMP PEAK 29(20Q13.2) MUTATED   461  12
  AMP PEAK 29(20Q13.2) WILD-TYPE 418   9
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 29(20Q13.2) MUTATED    461   12
  AMP PEAK 29(20Q13.2) WILD-TYPE  418    9
   clus
vv  AMP PEAK 29(20Q13.2) MUTATED AMP PEAK 29(20Q13.2) WILD-TYPE
  0                          461                            418
  1                           12                              9
[1] 2 2
[1] FALSE
D29V7, binary
                                cls
clus                               0   1
  AMP PEAK 29(20Q13.2) MUTATED   531   9
  AMP PEAK 29(20Q13.2) WILD-TYPE 520   2
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 29(20Q13.2) MUTATED    531    9
  AMP PEAK 29(20Q13.2) WILD-TYPE  520    2
        clus
vv       AMP PEAK 29(20Q13.2) MUTATED AMP PEAK 29(20Q13.2) WILD-TYPE
  FEMALE                          531                            520
  MALE                              9                              2
[1] 2 2
[1] FALSE
                                vv
clus                             INFILTRATING CARCINOMA NOS
  AMP PEAK 29(20Q13.2) MUTATED                            1
  AMP PEAK 29(20Q13.2) WILD-TYPE                          0
                                vv
clus                             INFILTRATING DUCTAL CARCINOMA
  AMP PEAK 29(20Q13.2) MUTATED                             446
  AMP PEAK 29(20Q13.2) WILD-TYPE                           317
                                vv
clus                             INFILTRATING LOBULAR CARCINOMA
  AMP PEAK 29(20Q13.2) MUTATED                               53
  AMP PEAK 29(20Q13.2) WILD-TYPE                            139
                                vv
clus                             MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  AMP PEAK 29(20Q13.2) MUTATED                     1                     3
  AMP PEAK 29(20Q13.2) WILD-TYPE                   5                     1
                                vv
clus                             MIXED HISTOLOGY (PLEASE SPECIFY)
  AMP PEAK 29(20Q13.2) MUTATED                                 12
  AMP PEAK 29(20Q13.2) WILD-TYPE                               18
                                vv
clus                             MUCINOUS CARCINOMA OTHER  SPECIFY
  AMP PEAK 29(20Q13.2) MUTATED                    1             23
  AMP PEAK 29(20Q13.2) WILD-TYPE                 16             25
D29V8, multiclass
                                  clus
vv                                 AMP PEAK 29(20Q13.2) MUTATED
  INFILTRATING CARCINOMA NOS                                  1
  INFILTRATING DUCTAL CARCINOMA                             446
  INFILTRATING LOBULAR CARCINOMA                             53
  MEDULLARY CARCINOMA                                         1
  METAPLASTIC CARCINOMA                                       3
  MIXED HISTOLOGY (PLEASE SPECIFY)                           12
  MUCINOUS CARCINOMA                                          1
  OTHER  SPECIFY                                             23
                                  clus
vv                                 AMP PEAK 29(20Q13.2) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                    0
  INFILTRATING DUCTAL CARCINOMA                               317
  INFILTRATING LOBULAR CARCINOMA                              139
  MEDULLARY CARCINOMA                                           5
  METAPLASTIC CARCINOMA                                         1
  MIXED HISTOLOGY (PLEASE SPECIFY)                             18
  MUCINOUS CARCINOMA                                           16
  OTHER  SPECIFY                                               25
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D29V9, binary
                                cls
clus                               0   1
  AMP PEAK 29(20Q13.2) MUTATED   173 367
  AMP PEAK 29(20Q13.2) WILD-TYPE 115 407
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 29(20Q13.2) MUTATED    173  367
  AMP PEAK 29(20Q13.2) WILD-TYPE  115  407
     clus
vv    AMP PEAK 29(20Q13.2) MUTATED AMP PEAK 29(20Q13.2) WILD-TYPE
  NO                           173                            115
  YES                          367                            407
[1] 2 2
[1] FALSE
D29V10, continuous
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK 29(20Q13.2) MUTATED                                  0    32
  AMP PEAK 29(20Q13.2) WILD-TYPE                                1    28
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 29(20Q13.2) MUTATED                          94   358
  AMP PEAK 29(20Q13.2) WILD-TYPE                        76   378
D29V11, multiclass
                                  clus
vv                                 AMP PEAK 29(20Q13.2) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            0
  ASIAN                                                      32
  BLACK OR AFRICAN AMERICAN                                  94
  WHITE                                                     358
                                  clus
vv                                 AMP PEAK 29(20Q13.2) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              1
  ASIAN                                                        28
  BLACK OR AFRICAN AMERICAN                                    76
  WHITE                                                       378
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D29V12, binary
                                cls
clus                               0   1
  AMP PEAK 29(20Q13.2) MUTATED    16 436
  AMP PEAK 29(20Q13.2) WILD-TYPE  22 422
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 29(20Q13.2) MUTATED     16  436
  AMP PEAK 29(20Q13.2) WILD-TYPE   22  422
                        clus
vv                       AMP PEAK 29(20Q13.2) MUTATED
  HISPANIC OR LATINO                               16
  NOT HISPANIC OR LATINO                          436
                        clus
vv                       AMP PEAK 29(20Q13.2) WILD-TYPE
  HISPANIC OR LATINO                                 22
  NOT HISPANIC OR LATINO                            422
[1] 2 2
[1] FALSE

Clustering(30) Variable = DEL PEAK  1(1P36.13) MUTATION ANALYSIS
D30V1, survival
                                sevent
clus2                              0   1
  DEL PEAK  1(1P36.13) MUTATED   379  57
  DEL PEAK  1(1P36.13) WILD-TYPE 537  71
  DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE 
                           436                            608 
  DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE 
                            57                             71 
$`DEL PEAK  1(1P36.13) MUTATED`
TCGA-3C-AALI TCGA-3C-AALJ TCGA-5T-A9QA TCGA-A1-A0SD TCGA-A1-A0SH TCGA-A1-A0SM 
      131.67        42.81         9.96        14.37        47.24         7.96 
TCGA-A1-A0SN TCGA-A1-A0SO TCGA-A2-A04P TCGA-A2-A04R TCGA-A2-A04W TCGA-A2-A04X 
       39.32        28.01        18.02       121.94       101.98        55.43 
TCGA-A2-A0CS TCGA-A2-A0CT TCGA-A2-A0CW TCGA-A2-A0CX TCGA-A2-A0D0 TCGA-A2-A0D4 
       75.55        75.25       107.93        56.81        67.33        25.22 
TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0ET TCGA-A2-A0EY TCGA-A2-A0SV TCGA-A2-A0T0 
      134.40        80.28        35.05        63.29        27.12        17.52 
TCGA-A2-A0T4 TCGA-A2-A0T7 TCGA-A2-A0YE TCGA-A2-A0YF TCGA-A2-A0YG TCGA-A2-A0YH 
       20.52        20.75        18.21        50.47        21.90        21.67 
TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A1FW TCGA-A2-A1FX TCGA-A2-A1G1 TCGA-A2-A25B 
       49.48        18.61        17.36        60.72        19.20        42.44 
TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A3KC TCGA-A2-A3XS TCGA-A2-A3XU TCGA-A2-A3XZ 
       17.19        18.15        20.88        33.93        29.98        50.37 
TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4S3 TCGA-A7-A0CD TCGA-A7-A0DA TCGA-A7-A0DC 
       38.37         7.30        21.90        38.30        35.67        29.79 
TCGA-A7-A13F TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A2KD TCGA-A7-A4SA TCGA-A7-A4SE 
       25.15        31.36        24.26        22.32        14.93        21.17 
TCGA-A7-A4SF TCGA-A7-A56D TCGA-A7-A5ZV TCGA-A7-A6VW TCGA-A7-A6VX TCGA-A7-A6VY 
       17.92        14.73        12.10         9.37        10.42         8.75 
TCGA-A8-A06O TCGA-A8-A06R TCGA-A8-A06T TCGA-A8-A06U TCGA-A8-A06Y TCGA-A8-A075 
       13.02        17.98        53.06        29.03        26.01        17.03 
TCGA-A8-A076 TCGA-A8-A079 TCGA-A8-A07B TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07L 
       53.98         9.01        43.00        18.97        18.97        32.05 
TCGA-A8-A07P TCGA-A8-A07R TCGA-A8-A084 TCGA-A8-A08B TCGA-A8-A08F TCGA-A8-A08J 
       10.98         8.98        15.06        38.01        33.01        37.05 
TCGA-A8-A08O TCGA-A8-A08P TCGA-A8-A08R TCGA-A8-A08S TCGA-A8-A08X TCGA-A8-A092 
       31.00        31.00         0.99        33.01        43.00        30.97 
TCGA-A8-A097 TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09C TCGA-A8-A09D 
       12.00         9.99         9.99        12.00         1.02        50.04 
TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09M TCGA-A8-A09N TCGA-A8-A09Q TCGA-A8-A09R 
       49.05        45.07        33.07         1.02        25.02         8.98 
TCGA-A8-A09W TCGA-A8-A0A2 TCGA-A8-A0A6 TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-AC-A23E 
        0.99        19.04        21.04        27.02        17.03         2.37 
TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FM TCGA-AC-A3BB TCGA-AC-A3OD TCGA-AC-A5XS 
       38.53        99.35        26.04        32.45        14.83         1.55 
TCGA-AC-A62V TCGA-AC-A62X TCGA-AC-A6IV TCGA-AC-A6IW TCGA-AC-A6IX TCGA-AC-A8OP 
       11.44        13.71        18.67        13.58        12.26        20.19 
TCGA-AC-A8OQ TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A041 TCGA-AN-A046 TCGA-AN-A049 
        1.12         0.33         0.33         0.23         0.33         0.62 
TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AK TCGA-AN-A0AL 
        2.96         1.78         1.71         9.96         7.36         6.51 
TCGA-AN-A0AR TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FL 
        0.33         0.33         6.44         7.96         7.00         7.59 
TCGA-AN-A0FN TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0XP TCGA-AN-A0XS 
        7.17         7.04         0.33         0.36         0.30         0.33 
TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AO-A03L TCGA-AO-A03N TCGA-AO-A03P TCGA-AO-A0J3 
        0.33         0.33        80.28        66.77        95.70        21.40 
TCGA-AO-A0J5 TCGA-AO-A0J6 TCGA-AO-A0J7 TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JD 
       26.04        37.48        20.32        53.03        21.53        72.00 
TCGA-AO-A0JE TCGA-AO-A0JG TCGA-AO-A0JI TCGA-AO-A0JL TCGA-AO-A0JM TCGA-AO-A124 
       76.77        26.24        50.24        55.33        71.80       102.58 
TCGA-AO-A129 TCGA-AO-A12A TCGA-AO-A12F TCGA-AO-A1KP TCGA-AO-A1KQ TCGA-AO-A1KS 
      108.03        90.58        48.36        82.62        61.87         0.53 
TCGA-AO-A1KT TCGA-AQ-A04J TCGA-AQ-A0Y5 TCGA-AQ-A1H2 TCGA-AQ-A54O TCGA-AR-A0TQ 
       17.79        26.93         5.65        15.62        32.91        73.64 
TCGA-AR-A0TT TCGA-AR-A0TW TCGA-AR-A0TY TCGA-AR-A0TZ TCGA-AR-A0U1 TCGA-AR-A0U2 
       86.66        98.93        55.86       107.24       101.95        83.87 
TCGA-AR-A0U3 TCGA-AR-A1AH TCGA-AR-A1AP TCGA-AR-A1AW TCGA-AR-A1AY TCGA-AR-A24H 
      114.02        75.55        39.98        63.62        33.73       160.90 
TCGA-AR-A24L TCGA-AR-A24Q TCGA-AR-A24R TCGA-AR-A24S TCGA-AR-A24T TCGA-AR-A250 
       94.22       104.28        87.22        97.84        76.01        89.00 
TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LK TCGA-AR-A2LL 
       73.18        72.76        58.92        93.83        54.21        66.15 
TCGA-AR-A2LO TCGA-AR-A5QN TCGA-AR-A5QP TCGA-B6-A0I1 TCGA-B6-A0I9 TCGA-B6-A0IB 
       39.39        16.04        20.45        77.62        12.13       129.57 
TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0IO TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RG 
      146.50       112.37       110.14       140.88       211.56        68.45 
TCGA-B6-A0RL TCGA-B6-A0RP TCGA-B6-A0RS TCGA-B6-A0RU TCGA-B6-A0WV TCGA-B6-A0WW 
       81.17       102.77       100.70       131.21        79.63        18.35 
TCGA-B6-A0WX TCGA-B6-A0WY TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A1KN 
       21.47       113.79        43.59       101.52        73.51       139.17 
TCGA-B6-A40B TCGA-BH-A0AV TCGA-BH-A0B2 TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B5 
      103.63        59.84        40.83        39.55        39.16        48.36 
TCGA-BH-A0B9 TCGA-BH-A0BA TCGA-BH-A0BF TCGA-BH-A0BP TCGA-BH-A0BT TCGA-BH-A0BV 
       51.68        37.22        25.71        48.69        45.57        49.94 
TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DG 
       41.75        44.02        42.90        45.83        31.17        23.44 
TCGA-BH-A0DH TCGA-BH-A0DK TCGA-BH-A0E2 TCGA-BH-A0E6 TCGA-BH-A0E9 TCGA-BH-A0EB 
       38.01        13.91        14.30         9.63        46.19        24.49 
TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H7 TCGA-BH-A0H9 TCGA-BH-A0HU TCGA-BH-A0HW 
       30.35        10.78        23.08        41.00        12.89        51.32 
TCGA-BH-A0W3 TCGA-BH-A18F TCGA-BH-A18J TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18P 
       23.93         8.81        20.12        90.84        26.66        30.28 
TCGA-BH-A18Q TCGA-BH-A18R TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1EN 
       55.63        37.55         7.36        51.39        51.16        69.93 
TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1F2 TCGA-BH-A1F8 TCGA-BH-A1FD TCGA-BH-A1FE 
       42.28        12.00        31.53        24.66        33.17        74.73 
TCGA-BH-A1FM TCGA-BH-A204 TCGA-BH-A209 TCGA-BH-A42T TCGA-BH-A5J0 TCGA-BH-AB28 
       45.63        83.31       130.16        10.52        23.51         9.44 
TCGA-C8-A12L TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12W TCGA-C8-A12Z TCGA-C8-A134 
       11.93        12.66        11.77        12.66         0.39         1.12 
TCGA-C8-A135 TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HL 
        1.05         4.08        12.33         0.16        12.03        10.42 
TCGA-C8-A1HM TCGA-C8-A26W TCGA-C8-A26X TCGA-C8-A274 TCGA-C8-A278 TCGA-C8-A27A 
        2.30         0.23         0.36         9.53         9.50        12.20 
TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A8HQ TCGA-D8-A13Y TCGA-D8-A142 TCGA-D8-A146 
        0.99         0.03        12.49        11.90        13.97        21.14 
TCGA-D8-A1J8 TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JD TCGA-D8-A1JE 
       14.17        16.50        18.71        15.78        18.15        18.90 
TCGA-D8-A1JF TCGA-D8-A1JI TCGA-D8-A1JJ TCGA-D8-A1JM TCGA-D8-A1JP TCGA-D8-A1X5 
       12.03        18.97        20.09        19.40        21.01        18.58 
TCGA-D8-A1X8 TCGA-D8-A1XF TCGA-D8-A1XG TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XL 
       25.74        15.22        14.73        21.83        14.50        19.92 
TCGA-D8-A1XO TCGA-D8-A1XQ TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XT TCGA-D8-A1XU 
       15.55        16.41        15.85        16.31         6.35        12.99 
TCGA-D8-A1XV TCGA-D8-A1XY TCGA-D8-A1XZ TCGA-D8-A1Y1 TCGA-D8-A1Y3 TCGA-D8-A27F 
       15.16        16.54        15.32         9.93        14.14        16.04 
TCGA-D8-A27T TCGA-D8-A27W TCGA-D8-A73U TCGA-D8-A73W TCGA-E2-A107 TCGA-E2-A109 
       13.08        12.26        16.18         8.02        34.42        46.59 
TCGA-E2-A10A TCGA-E2-A10C TCGA-E2-A10E TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14V 
       40.41        40.11        28.44        47.15        44.68        34.26 
TCGA-E2-A14Z TCGA-E2-A154 TCGA-E2-A158 TCGA-E2-A15A TCGA-E2-A15F TCGA-E2-A15H 
       18.51        19.43        14.79        23.34        21.63        12.92 
TCGA-E2-A15O TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A1IH TCGA-E2-A1II TCGA-E2-A1L7 
       13.02        17.06        14.07        33.73        33.70        27.42 
TCGA-E2-A1L8 TCGA-E2-A1LA TCGA-E2-A1LG TCGA-E2-A2P5 TCGA-E2-A2P6 TCGA-E2-A576 
       39.62        24.59        18.87        16.93         5.52        34.29 
TCGA-E9-A1N6 TCGA-E9-A1NA TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NF TCGA-E9-A1NI 
       13.48        36.56        39.55        12.59        35.24         9.86 
TCGA-E9-A1QZ TCGA-E9-A1R3 TCGA-E9-A1R5 TCGA-E9-A1R7 TCGA-E9-A1RC TCGA-E9-A1RE 
       11.90         2.56         3.02        21.21        40.24        34.65 
TCGA-E9-A1RF TCGA-E9-A1RG TCGA-E9-A1RH TCGA-E9-A226 TCGA-E9-A228 TCGA-E9-A229 
        6.58        21.27        34.59        34.13        12.53        13.32 
TCGA-E9-A22A TCGA-E9-A243 TCGA-E9-A244 TCGA-E9-A247 TCGA-E9-A249 TCGA-E9-A295 
       39.09        17.06         0.69        27.22         7.13         0.72 
TCGA-E9-A2JS TCGA-E9-A3HO TCGA-E9-A3X8 TCGA-E9-A54Y TCGA-E9-A5UP TCGA-EW-A1IW 
       29.72        26.07        15.72        23.84        14.40        12.20 
TCGA-EW-A1J1 TCGA-EW-A1J6 TCGA-EW-A1OV TCGA-EW-A1OW TCGA-EW-A1OY TCGA-EW-A1OZ 
       18.90        28.77        25.94        22.82        29.85        40.41 
TCGA-EW-A1P3 TCGA-EW-A1P5 TCGA-EW-A1P8 TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A1PE 
       52.96        23.11         7.86         6.15        13.94        10.52 
TCGA-EW-A1PF TCGA-EW-A1PH TCGA-EW-A2FR TCGA-EW-A2FV TCGA-EW-A2FW TCGA-EW-A3U0 
       14.43        19.96        55.00        25.91        22.09        17.49 
TCGA-EW-A423 TCGA-EW-A424 TCGA-GI-A2C8 TCGA-GM-A3NW TCGA-GM-A3XL TCGA-GM-A4E0 
       10.16        23.51         7.40       110.50        69.30        72.03 
TCGA-JL-A3YX TCGA-LL-A441 TCGA-LL-A5YL TCGA-LL-A5YM TCGA-LL-A5YP TCGA-LL-A6FP 
       11.57        11.44        17.06        15.32        14.79        22.26 
TCGA-LL-A7T0 TCGA-LL-A8F5 TCGA-LL-A9Q3 TCGA-LQ-A4E4 TCGA-OK-A5Q2 TCGA-OL-A5S0 
       12.36        14.73        14.07        27.91         2.10        20.38 
TCGA-OL-A66J TCGA-OL-A66K TCGA-OL-A66N TCGA-OL-A97C TCGA-PE-A5DC TCGA-PE-A5DD 
       65.62        41.92        26.04         8.91        47.01        64.21 
TCGA-PL-A8LX TCGA-S3-A6ZF TCGA-S3-A6ZG TCGA-S3-A6ZH TCGA-S3-AA17 TCGA-UU-A93S 
        0.16        16.50        13.12        16.93        13.94         3.81 
TCGA-WT-AB41 TCGA-WT-AB44 TCGA-XX-A89A TCGA-Z7-A8R5 
       52.96        29.03        16.04       108.07 

$`DEL PEAK  1(1P36.13) WILD-TYPE`
TCGA-3C-AAAU TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT0 TCGA-5L-AAT1 TCGA-A1-A0SB 
      129.14        40.14        11.44        48.56        48.36         8.52 
TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SI TCGA-A1-A0SJ TCGA-A1-A0SK 
       43.43        48.10        14.27        20.88        13.68        31.79 
TCGA-A1-A0SP TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04Q TCGA-A2-A04T TCGA-A2-A04U 
       19.20        18.21       104.81        78.41        73.84        87.25 
TCGA-A2-A04V TCGA-A2-A04Y TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO 
       63.12        36.13       136.73        99.12        24.79       114.81 
TCGA-A2-A0CP TCGA-A2-A0CQ TCGA-A2-A0CR TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0D1 
       92.48        88.60       107.93         5.19        98.99        34.55 
TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0EM TCGA-A2-A0EP TCGA-A2-A0EQ TCGA-A2-A0ER 
       33.76        61.58       101.72       107.61        79.76        74.40 
TCGA-A2-A0ES TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0ST 
       72.00        34.29        31.82        61.94        24.72        99.19 
TCGA-A2-A0SU TCGA-A2-A0SW TCGA-A2-A0SX TCGA-A2-A0SY TCGA-A2-A0T1 TCGA-A2-A0T2 
       54.64        44.88        50.43        44.28        17.13         8.38 
TCGA-A2-A0T3 TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YK 
       49.84        17.46        18.90        32.55        25.28        19.33 
TCGA-A2-A0YL TCGA-A2-A0YM TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FZ TCGA-A2-A1G0 
       48.46        31.73        23.77        23.47        22.45        20.25 
TCGA-A2-A1G4 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25A TCGA-A2-A25E TCGA-A2-A25F 
       19.56        16.47        52.47       107.70       105.34        10.59 
TCGA-A2-A3KD TCGA-A2-A3XT TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX TCGA-A2-A3XY 
       39.65        83.01        32.75        49.48        47.31        34.98 
TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A7-A0CE 
       24.39        21.30        23.21        26.96        21.14        35.31 
TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0CJ TCGA-A7-A0D9 TCGA-A7-A0DB TCGA-A7-A13D 
       34.29        35.47        30.61        37.45        33.11        31.73 
TCGA-A7-A13E TCGA-A7-A13G TCGA-A7-A13H TCGA-A7-A26G TCGA-A7-A26H TCGA-A7-A26I 
       20.19        23.61        29.56        23.74        23.80        21.73 
TCGA-A7-A26J TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3J1 TCGA-A7-A3RF 
       20.61        11.34        10.59        10.29        11.28        13.41 
TCGA-A7-A425 TCGA-A7-A426 TCGA-A7-A4SB TCGA-A7-A4SD TCGA-A7-A5ZW TCGA-A7-A5ZX 
       14.70        11.97        13.74        14.50        10.72        11.05 
TCGA-A7-A6VV TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06X TCGA-A8-A06Z TCGA-A8-A07E 
       10.29        13.02         1.02        31.00         1.02        19.99 
TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07O TCGA-A8-A07S TCGA-A8-A07U TCGA-A8-A07W 
       14.01        12.00         9.99         7.99        24.99         9.99 
TCGA-A8-A07Z TCGA-A8-A082 TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08C 
       45.07        18.05        36.95        13.02         0.99        28.96 
TCGA-A8-A08G TCGA-A8-A08I TCGA-A8-A08L TCGA-A8-A08T TCGA-A8-A08Z TCGA-A8-A091 
       19.96        12.00         9.99       112.08        40.01        33.01 
TCGA-A8-A093 TCGA-A8-A095 TCGA-A8-A09K TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09X 
       17.95        41.98        29.98        19.04        15.02        14.01 
TCGA-A8-A0A1 TCGA-A8-A0A4 TCGA-A8-A0A7 TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23G 
       12.00        13.02         0.99        38.04         0.95        10.85 
TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2FB TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK 
        5.72         1.48        40.57        55.43        36.99        38.79 
TCGA-AC-A2FO TCGA-AC-A2QH TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3HN TCGA-AC-A3QP 
       50.70        33.04         0.92         2.27        16.31        22.19 
TCGA-AC-A3TN TCGA-AC-A3W5 TCGA-AC-A3W6 TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A62Y 
       14.99        16.57        19.79        23.24        24.79        17.42 
TCGA-AC-A6NO TCGA-AC-A7VB TCGA-AC-A7VC TCGA-AC-A8OR TCGA-AC-A8OS TCGA-AN-A0AM 
        1.68         8.22         0.03         1.32         2.30         0.16 
TCGA-AN-A0AS TCGA-AN-A0FF TCGA-AN-A0FS TCGA-AN-A0FX TCGA-AN-A0FY TCGA-AN-A0FZ 
        0.33         5.65         6.28         0.33         0.33         0.33 
TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XR TCGA-AN-A0XV TCGA-AN-A0XW 
        0.33         0.33        12.33         0.33         5.33         5.59 
TCGA-AO-A03M TCGA-AO-A03O TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V 
       61.35        81.63        68.75        47.87        58.95        29.13 
TCGA-AO-A0J2 TCGA-AO-A0J4 TCGA-AO-A0J8 TCGA-AO-A0JB TCGA-AO-A0JC TCGA-AO-A0JF 
       32.78        52.18        22.36        50.70        50.86        21.37 
TCGA-AO-A0JJ TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 TCGA-AO-A12B TCGA-AO-A12D 
       62.04        99.25       108.72       106.78        98.27        64.04 
TCGA-AO-A12E TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KR TCGA-AQ-A04H 
       57.30        41.62        28.37        14.73        70.39        24.79 
TCGA-AQ-A04L TCGA-AQ-A1H3 TCGA-AQ-A54N TCGA-AQ-A7U7 TCGA-AR-A0TP TCGA-AR-A0TR 
      130.09        32.52         2.56        19.20       111.32         5.26 
TCGA-AR-A0TS TCGA-AR-A0TV TCGA-AR-A0TX TCGA-AR-A0U0 TCGA-AR-A0U4 TCGA-AR-A1AI 
       74.79        42.35        64.83        65.36        85.97        61.84 
TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AM TCGA-AR-A1AN TCGA-AR-A1AO 
       52.77        51.25        48.82        76.11        43.73        43.56 
TCGA-AR-A1AQ TCGA-AR-A1AR TCGA-AR-A1AS TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A1AX 
       43.07        17.23        37.81        76.21        61.28        62.14 
TCGA-AR-A24K TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24U 
       50.89        96.89        78.51        84.20         2.76        53.36 
TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A24Z TCGA-AR-A251 TCGA-AR-A2LE 
       85.35        50.96        83.77        79.00        78.48       143.21 
TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LQ TCGA-AR-A2LR 
       20.25        62.86        52.11        38.17        40.54        20.38 
TCGA-AR-A5QM TCGA-AR-A5QQ TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0IA TCGA-B6-A0IC 
       54.74        10.59       143.38       149.59       220.90        50.70 
TCGA-B6-A0IE TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IP 
       65.72       176.98        18.77       126.12        84.59       110.93 
TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RM TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RQ 
      189.01       234.28        78.02       172.96       162.05       140.48 
TCGA-B6-A0RT TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WZ TCGA-B6-A0X0 
       89.46       157.41        97.48       188.68       129.57       129.70 
TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A2IU TCGA-B6-A401 
      186.48        28.27        68.94        58.88       170.17        85.35 
TCGA-B6-A402 TCGA-B6-A408 TCGA-B6-A40C TCGA-BH-A0AU TCGA-BH-A0AW TCGA-BH-A0AY 
       74.99        68.12        71.15        24.53        20.45        25.55 
TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B6 TCGA-BH-A0B7 TCGA-BH-A0BC TCGA-BH-A0BD 
       28.50        46.95        56.94        56.98        32.02        18.21 
TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BQ 
       24.85        21.70        44.05        61.68        35.67        27.19 
TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BW TCGA-BH-A0BZ TCGA-BH-A0C3 TCGA-BH-A0DI 
       53.69        53.95        11.67        49.05        48.13        22.13 
TCGA-BH-A0DL TCGA-BH-A0DO TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DT 
       48.23        17.26        15.65         3.22         2.56        38.47 
TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E7 
       67.86        47.41        16.27         4.41        15.68        44.81 
TCGA-BH-A0EA TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 
       32.58        31.00        24.43        15.16        37.78        35.51 
TCGA-BH-A0H6 TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HO 
       24.56        52.96        26.50        20.38         5.85         2.50 
TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0RX TCGA-BH-A0W4 
       13.61        36.85        27.25        50.79         5.59        24.95 
TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A0WA TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18M 
       42.35        44.81        23.05         2.01         7.23        72.56 
TCGA-BH-A18N TCGA-BH-A18S TCGA-BH-A1EO TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EW 
       37.74        66.05        91.99       113.82        82.85        55.69 
TCGA-BH-A1EX TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F5 TCGA-BH-A1F6 TCGA-BH-A1FB 
       49.58        17.69        25.81        89.16        97.48       120.62 
TCGA-BH-A1FC TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FN 
      114.15       122.89        36.92        63.35        55.00        72.07 
TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A203 TCGA-BH-A208 
      144.59        72.07        28.14        26.14        38.60        57.83 
TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5IZ 
       10.65         6.44        20.12       109.28         8.94        18.64 
TCGA-BH-A6R8 TCGA-BH-A6R9 TCGA-BH-A8FY TCGA-BH-A8FZ TCGA-BH-A8G0 TCGA-C8-A12M 
        9.63         5.26         9.70        18.87        21.76        11.77 
TCGA-C8-A12N TCGA-C8-A12Q TCGA-C8-A12U TCGA-C8-A12V TCGA-C8-A12X TCGA-C8-A130 
       11.77        12.66        12.66        12.66        12.66         3.16 
TCGA-C8-A131 TCGA-C8-A132 TCGA-C8-A137 TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HI 
        2.24         1.87         4.11        10.92        11.34        11.28 
TCGA-C8-A1HN TCGA-C8-A26V TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A275 
        3.25         0.30         0.43         8.28         9.67         0.03 
TCGA-C8-A3M8 TCGA-C8-A8HP TCGA-C8-A8HR TCGA-C8-A9FZ TCGA-D8-A13Z TCGA-D8-A140 
        0.23        13.02        13.41        19.46        20.88        13.25 
TCGA-D8-A141 TCGA-D8-A143 TCGA-D8-A145 TCGA-D8-A147 TCGA-D8-A1J9 TCGA-D8-A1JG 
       20.58        14.17        13.48        19.20        17.49        12.03 
TCGA-D8-A1JH TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JN TCGA-D8-A1JS TCGA-D8-A1JT 
       14.01        20.12        20.09        20.38        12.20        13.32 
TCGA-D8-A1JU TCGA-D8-A1X6 TCGA-D8-A1X7 TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XB 
       14.70        17.79        16.73        23.90        27.58        18.15 
TCGA-D8-A1XC TCGA-D8-A1XD TCGA-D8-A1XM TCGA-D8-A1XW TCGA-D8-A1Y0 TCGA-D8-A1Y2 
       12.39        17.16        17.69        12.66        15.52        14.24 
TCGA-D8-A27E TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27L 
       17.42        13.45        13.05        14.43         9.44        16.41 
TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27R TCGA-D8-A27V TCGA-D8-A3Z5 
       13.48         4.80         0.76        10.09        12.53        33.37 
TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-D8-A73X TCGA-E2-A105 TCGA-E2-A108 TCGA-E2-A10B 
       18.51        21.67        12.10        43.00        27.52        37.51 
TCGA-E2-A10F TCGA-E2-A14P TCGA-E2-A14Q TCGA-E2-A14R TCGA-E2-A14S TCGA-E2-A14T 
       28.87        40.96        38.24        38.60        33.17        33.30 
TCGA-E2-A14U TCGA-E2-A14W TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A150 TCGA-E2-A152 
       43.33        32.02        31.96        28.60        25.41        27.12 
TCGA-E2-A153 TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A159 TCGA-E2-A15C TCGA-E2-A15D 
       23.24        21.04        23.87        25.05        22.82        17.29 
TCGA-E2-A15E TCGA-E2-A15G TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L 
       20.71        18.21        17.42        19.40         9.04        20.58 
TCGA-E2-A15M TCGA-E2-A15P TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B1 
       11.05        19.56        14.99        60.53        53.62        53.03 
TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BC TCGA-E2-A1BD TCGA-E2-A1IE 
       33.01        32.35        28.50        16.47        17.10        38.30 
TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN 
       37.41        32.78        28.44        22.65         3.88        22.19 
TCGA-E2-A1IO TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L9 TCGA-E2-A1LB TCGA-E2-A1LE 
       20.98        11.08        54.18        19.66        40.47        28.90 
TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A1LL TCGA-E2-A3DX TCGA-E2-A56Z 
      106.75       102.61         8.75        43.04        15.72         8.28 
TCGA-E2-A570 TCGA-E2-A573 TCGA-E2-A574 TCGA-E2-A9RU TCGA-E9-A1N3 TCGA-E9-A1N4 
       30.61        34.92        26.56        12.85        34.82        32.88 
TCGA-E9-A1N5 TCGA-E9-A1N8 TCGA-E9-A1N9 TCGA-E9-A1NE TCGA-E9-A1NG TCGA-E9-A1R0 
       36.82        12.00        13.12        35.77        25.84        28.27 
TCGA-E9-A1R2 TCGA-E9-A1R4 TCGA-E9-A1R6 TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RD 
       34.95         6.12         2.76        32.09        32.09         1.12 
TCGA-E9-A1RI TCGA-E9-A227 TCGA-E9-A22B TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A22G 
       35.64        32.05        22.75        41.03        12.89        23.51 
TCGA-E9-A22H TCGA-E9-A248 TCGA-E9-A24A TCGA-E9-A2JT TCGA-E9-A3Q9 TCGA-E9-A3QA 
       20.71         1.94        24.56         0.76        18.41        30.18 
TCGA-E9-A54X TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UO TCGA-E9-A6HE TCGA-EW-A1IX 
       12.33        14.70         0.79        13.81        15.39        39.72 
TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J5 TCGA-EW-A1OX 
        8.48        18.21        13.25        16.57        15.68        29.95 
TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P4 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1PA 
       41.13        39.78        29.82        18.48        30.08        18.90 
TCGA-EW-A1PB TCGA-EW-A1PG TCGA-EW-A2FS TCGA-EW-A3E8 TCGA-GI-A2C9 TCGA-GM-A2D9 
       19.99        34.55        52.73        34.03       109.87        59.57 
TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DC TCGA-GM-A2DD TCGA-GM-A2DF TCGA-GM-A2DH 
      216.76        79.10        83.34        75.02        70.85        72.10 
TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A2DO 
       85.15        86.96       115.69       106.06       101.62        85.35 
TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XN TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2NL 
       38.20        43.73        66.38        13.55        18.12         2.60 
TCGA-HN-A2OB TCGA-JL-A3YW TCGA-LD-A66U TCGA-LD-A74U TCGA-LD-A7W5 TCGA-LD-A7W6 
       62.43        11.84        21.24        13.22         7.10        13.28 
TCGA-LD-A9QF TCGA-LL-A440 TCGA-LL-A442 TCGA-LL-A50Y TCGA-LL-A5YN TCGA-LL-A5YO 
       10.62        24.95        10.95        25.05        14.70        14.47 
TCGA-LL-A6FQ TCGA-LL-A6FR TCGA-LL-A73Y TCGA-LL-A73Z TCGA-LL-A740 TCGA-LL-A7SZ 
        2.63        16.08        15.68         7.46        14.50        14.70 
TCGA-MS-A51U TCGA-OL-A5D6 TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RU 
       22.39        36.30        58.52        31.99        58.62        40.08 
TCGA-OL-A5RV TCGA-OL-A5RW TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A66H 
       34.92        36.36        28.87        24.72        22.32        26.70 
TCGA-OL-A66I TCGA-OL-A66L TCGA-OL-A66O TCGA-OL-A66P TCGA-OL-A6VO TCGA-OL-A6VQ 
       23.47        42.77        17.36        14.07        28.21        19.73 
TCGA-OL-A6VR TCGA-PE-A5DE TCGA-PL-A8LY TCGA-PL-A8LZ TCGA-S3-AA0Z TCGA-S3-AA10 
       40.11        86.96         0.26         9.93        16.80        15.39 
TCGA-S3-AA11 TCGA-S3-AA12 TCGA-S3-AA14 TCGA-S3-AA15 TCGA-UL-AAZ6 TCGA-W8-A86G 
       13.84        15.35        14.96        13.84        17.03        11.41 
TCGA-XX-A899 TCGA-Z7-A8R6 
       15.35       107.05 

  DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE 
                          0.03                           0.03 
  DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE 
                        211.56                         234.28 
  DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE 
                         21.90                          25.48 
[1] "0.0 - 211.6 (21.9)" "0.0 - 234.3 (25.5)"
[1] "hr=" "1.3"
D30V2, continuous
                                vv
clus                             STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  DEL PEAK  1(1P36.13) MUTATED        28       22        1        1       137
  DEL PEAK  1(1P36.13) WILD-TYPE      61       59        7        2       216
                                vv
clus                             STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  DEL PEAK  1(1P36.13) MUTATED         112         1         72         18
  DEL PEAK  1(1P36.13) WILD-TYPE       133         1         78         11
                                vv
clus                             STAGE IIIC STAGE IV STAGE TIS STAGE X
  DEL PEAK  1(1P36.13) MUTATED           31       12         0       5
  DEL PEAK  1(1P36.13) WILD-TYPE         32        8         1       8
D30V3, multiclass
            clus
vv           DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  STAGE I                              28                             61
  STAGE IA                             22                             59
  STAGE IB                              1                              7
  STAGE II                              1                              2
  STAGE IIA                           137                            216
  STAGE IIB                           112                            133
  STAGE III                             1                              1
  STAGE IIIA                           72                             78
  STAGE IIIB                           18                             11
  STAGE IIIC                           31                             32
  STAGE IV                             12                              8
  STAGE TIS                             0                              1
  STAGE X                               5                              8
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              T1  T2  T3  T4
  DEL PEAK  1(1P36.13) MUTATED    81 282  51  26
  DEL PEAK  1(1P36.13) WILD-TYPE 191 334  79  14
D30V4, multiclass
    clus
vv   DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  T1                           81                            191
  T2                          282                            334
  T3                           51                             79
  T4                           26                             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              N0  N1  N2  N3
  DEL PEAK  1(1P36.13) MUTATED   175 164  55  39
  DEL PEAK  1(1P36.13) WILD-TYPE 326 186  62  36
D30V5, multiclass
    clus
vv   DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  N0                          175                            326
  N1                          164                            186
  N2                           55                             62
  N3                           39                             36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D30V6, binary
                                cls
clus                               0   1
  DEL PEAK  1(1P36.13) MUTATED   366  13
  DEL PEAK  1(1P36.13) WILD-TYPE 513   8
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  1(1P36.13) MUTATED    366   13
  DEL PEAK  1(1P36.13) WILD-TYPE  513    8
   clus
vv  DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  0                          366                            513
  1                           13                              8
[1] 2 2
[1] FALSE
D30V7, binary
                                cls
clus                               0   1
  DEL PEAK  1(1P36.13) MUTATED   433   8
  DEL PEAK  1(1P36.13) WILD-TYPE 618   3
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  1(1P36.13) MUTATED    433    8
  DEL PEAK  1(1P36.13) WILD-TYPE  618    3
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  FEMALE                          433                            618
  MALE                              8                              3
[1] 2 2
[1] FALSE
                                vv
clus                             INFILTRATING CARCINOMA NOS
  DEL PEAK  1(1P36.13) MUTATED                            1
  DEL PEAK  1(1P36.13) WILD-TYPE                          0
                                vv
clus                             INFILTRATING DUCTAL CARCINOMA
  DEL PEAK  1(1P36.13) MUTATED                             341
  DEL PEAK  1(1P36.13) WILD-TYPE                           422
                                vv
clus                             INFILTRATING LOBULAR CARCINOMA
  DEL PEAK  1(1P36.13) MUTATED                               69
  DEL PEAK  1(1P36.13) WILD-TYPE                            123
                                vv
clus                             MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  DEL PEAK  1(1P36.13) MUTATED                     1                     0
  DEL PEAK  1(1P36.13) WILD-TYPE                   5                     4
                                vv
clus                             MIXED HISTOLOGY (PLEASE SPECIFY)
  DEL PEAK  1(1P36.13) MUTATED                                  8
  DEL PEAK  1(1P36.13) WILD-TYPE                               22
                                vv
clus                             MUCINOUS CARCINOMA OTHER  SPECIFY
  DEL PEAK  1(1P36.13) MUTATED                    4             17
  DEL PEAK  1(1P36.13) WILD-TYPE                 13             31
D30V8, multiclass
                                  clus
vv                                 DEL PEAK  1(1P36.13) MUTATED
  INFILTRATING CARCINOMA NOS                                  1
  INFILTRATING DUCTAL CARCINOMA                             341
  INFILTRATING LOBULAR CARCINOMA                             69
  MEDULLARY CARCINOMA                                         1
  METAPLASTIC CARCINOMA                                       0
  MIXED HISTOLOGY (PLEASE SPECIFY)                            8
  MUCINOUS CARCINOMA                                          4
  OTHER  SPECIFY                                             17
                                  clus
vv                                 DEL PEAK  1(1P36.13) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                    0
  INFILTRATING DUCTAL CARCINOMA                               422
  INFILTRATING LOBULAR CARCINOMA                              123
  MEDULLARY CARCINOMA                                           5
  METAPLASTIC CARCINOMA                                         4
  MIXED HISTOLOGY (PLEASE SPECIFY)                             22
  MUCINOUS CARCINOMA                                           13
  OTHER  SPECIFY                                               31
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D30V9, binary
                                cls
clus                               0   1
  DEL PEAK  1(1P36.13) MUTATED   134 307
  DEL PEAK  1(1P36.13) WILD-TYPE 154 467
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  1(1P36.13) MUTATED    134  307
  DEL PEAK  1(1P36.13) WILD-TYPE  154  467
     clus
vv    DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  NO                           134                            154
  YES                          307                            467
[1] 2 2
[1] FALSE
D30V10, continuous
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK  1(1P36.13) MUTATED                                  0    25
  DEL PEAK  1(1P36.13) WILD-TYPE                                1    35
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK  1(1P36.13) MUTATED                          72   295
  DEL PEAK  1(1P36.13) WILD-TYPE                        98   441
D30V11, multiclass
                                  clus
vv                                 DEL PEAK  1(1P36.13) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            0
  ASIAN                                                      25
  BLACK OR AFRICAN AMERICAN                                  72
  WHITE                                                     295
                                  clus
vv                                 DEL PEAK  1(1P36.13) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              1
  ASIAN                                                        35
  BLACK OR AFRICAN AMERICAN                                    98
  WHITE                                                       441
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D30V12, binary
                                cls
clus                               0   1
  DEL PEAK  1(1P36.13) MUTATED    16 349
  DEL PEAK  1(1P36.13) WILD-TYPE  22 509
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  1(1P36.13) MUTATED     16  349
  DEL PEAK  1(1P36.13) WILD-TYPE   22  509
                        clus
vv                       DEL PEAK  1(1P36.13) MUTATED
  HISPANIC OR LATINO                               16
  NOT HISPANIC OR LATINO                          349
                        clus
vv                       DEL PEAK  1(1P36.13) WILD-TYPE
  HISPANIC OR LATINO                                 22
  NOT HISPANIC OR LATINO                            509
[1] 2 2
[1] FALSE

Clustering(31) Variable = DEL PEAK  2(1P22.1) MUTATION ANALYSIS
D31V1, survival
                               sevent
clus2                             0   1
  DEL PEAK  2(1P22.1) MUTATED   298  53
  DEL PEAK  2(1P22.1) WILD-TYPE 618  75
  DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE 
                          351                           693 
  DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE 
                           53                            75 
$`DEL PEAK  2(1P22.1) MUTATED`
TCGA-3C-AALI TCGA-5T-A9QA TCGA-A1-A0SD TCGA-A1-A0SF TCGA-A1-A0SK TCGA-A1-A0SN 
      131.67         9.96        14.37        48.10        31.79        39.32 
TCGA-A1-A0SO TCGA-A2-A04R TCGA-A2-A04Y TCGA-A2-A0CO TCGA-A2-A0CS TCGA-A2-A0CT 
       28.01       121.94        36.13       114.81        75.55        75.25 
TCGA-A2-A0CW TCGA-A2-A0CX TCGA-A2-A0D4 TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EQ 
      107.93        56.81        25.22       134.40        80.28        79.76 
TCGA-A2-A0ET TCGA-A2-A0EY TCGA-A2-A0SV TCGA-A2-A0T0 TCGA-A2-A0T4 TCGA-A2-A0YE 
       35.05        63.29        27.12        17.52        20.52        18.21 
TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A0YJ TCGA-A2-A0YT TCGA-A2-A1FW TCGA-A2-A25C 
       21.90        21.67        18.61        23.77        17.36        17.19 
TCGA-A2-A3KC TCGA-A2-A3XU TCGA-A2-A3XZ TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CJ 
       20.88        29.98        50.37        21.14        21.90        30.61 
TCGA-A7-A0DC TCGA-A7-A13E TCGA-A7-A26E TCGA-A7-A2KD TCGA-A7-A3J1 TCGA-A7-A4SA 
       29.79        20.19        31.36        22.32        11.28        14.93 
TCGA-A7-A4SF TCGA-A7-A56D TCGA-A7-A6VY TCGA-A8-A06O TCGA-A8-A06T TCGA-A8-A06U 
       17.92        14.73         8.75        13.02        53.06        29.03 
TCGA-A8-A06Y TCGA-A8-A07B TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07L 
       26.01        43.00        18.97        18.97        14.01        32.05 
TCGA-A8-A07R TCGA-A8-A084 TCGA-A8-A08B TCGA-A8-A08F TCGA-A8-A08G TCGA-A8-A08I 
        8.98        15.06        38.01        33.01        19.96        12.00 
TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08P TCGA-A8-A08R TCGA-A8-A08S TCGA-A8-A08X 
       37.05         9.99        31.00         0.99        33.01        43.00 
TCGA-A8-A092 TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09C TCGA-A8-A09D 
       30.97         9.99         9.99        12.00         1.02        50.04 
TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09N TCGA-A8-A09R TCGA-A8-A09X TCGA-A8-A0A1 
       49.05        45.07         1.02         8.98        14.01        12.00 
TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-AC-A23E 
       19.04        13.02        21.04        27.02        17.03         2.37 
TCGA-AC-A2BM TCGA-AC-A2FM TCGA-AC-A3BB TCGA-AC-A3OD TCGA-AC-A62V TCGA-AC-A8OP 
       99.35        26.04        32.45        14.83        11.44        20.19 
TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A041 TCGA-AN-A046 TCGA-AN-A04A TCGA-AN-A04C 
        0.33         0.33         0.23         0.33         2.96         1.78 
TCGA-AN-A0AJ TCGA-AN-A0AK TCGA-AN-A0AM TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0FK 
        9.96         7.36         0.16         0.33         6.44         7.00 
TCGA-AN-A0FN TCGA-AN-A0FT TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XS TCGA-AN-A0XU 
        7.17         7.04        12.33         0.30         0.33         0.33 
TCGA-AN-A0XW TCGA-AO-A03L TCGA-AO-A03N TCGA-AO-A03P TCGA-AO-A0J3 TCGA-AO-A0J5 
        5.59        80.28        66.77        95.70        21.40        26.04 
TCGA-AO-A0J7 TCGA-AO-A0JA TCGA-AO-A0JD TCGA-AO-A0JI TCGA-AO-A124 TCGA-AO-A12A 
       20.32        21.53        72.00        50.24       102.58        90.58 
TCGA-AO-A12F TCGA-AO-A1KP TCGA-AO-A1KQ TCGA-AO-A1KR TCGA-AO-A1KS TCGA-AQ-A04H 
       48.36        82.62        61.87        70.39         0.53        24.79 
TCGA-AQ-A0Y5 TCGA-AQ-A7U7 TCGA-AR-A0TP TCGA-AR-A0TQ TCGA-AR-A0TT TCGA-AR-A0TW 
        5.65        19.20       111.32        73.64        86.66        98.93 
TCGA-AR-A0U2 TCGA-AR-A1AP TCGA-AR-A1AU TCGA-AR-A1AW TCGA-AR-A24R TCGA-AR-A24S 
       83.87        39.98        76.21        63.62        87.22        97.84 
TCGA-AR-A24T TCGA-AR-A24W TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A252 TCGA-AR-A254 
       76.01        50.96        79.00        89.00        73.18        72.76 
TCGA-AR-A255 TCGA-AR-A2LK TCGA-AR-A2LL TCGA-AR-A2LO TCGA-AR-A5QN TCGA-B6-A0I9 
       58.92        54.21        66.15        39.39        16.04        12.13 
TCGA-B6-A0IB TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0IO TCGA-B6-A0RL TCGA-B6-A0RO 
      129.57       146.50       112.37       110.14        81.17       162.05 
TCGA-B6-A0RP TCGA-B6-A0RS TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0WY TCGA-B6-A0X7 
      102.77       100.70        79.63        18.35       113.79        58.88 
TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A1KN TCGA-B6-A402 TCGA-B6-A40B TCGA-BH-A0AU 
      101.52        73.51       139.17        74.99       103.63        24.53 
TCGA-BH-A0AZ TCGA-BH-A0B2 TCGA-BH-A0B5 TCGA-BH-A0B6 TCGA-BH-A0B7 TCGA-BH-A0BA 
       28.50        40.83        48.36        56.94        56.98        37.22 
TCGA-BH-A0BD TCGA-BH-A0BF TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BV TCGA-BH-A0C0 
       18.21        25.71        21.70        44.05        49.94        41.75 
TCGA-BH-A0C1 TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E2 
       44.02        42.90        45.83        47.41        16.27        14.30 
TCGA-BH-A0E9 TCGA-BH-A0EB TCGA-BH-A0GZ TCGA-BH-A0H7 TCGA-BH-A0H9 TCGA-BH-A0HU 
       46.19        24.49        10.78        23.08        41.00        12.89 
TCGA-BH-A0HW TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A18F TCGA-BH-A18J TCGA-BH-A18K 
       51.32        23.93        24.95         8.81        20.12        90.84 
TCGA-BH-A18L TCGA-BH-A18P TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1EN 
       26.66        30.28         7.36        51.39        51.16        69.93 
TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1EY TCGA-BH-A1F6 TCGA-BH-A1F8 
       42.28        12.00        55.69        17.69        97.48        24.66 
TCGA-BH-A1FE TCGA-BH-A1FL TCGA-BH-A1FM TCGA-BH-A1FN TCGA-BH-A203 TCGA-BH-A42T 
       74.73        55.00        45.63        72.07        38.60        10.52 
TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-C8-A12L TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A12Z 
       18.64        23.51        11.93        12.66        12.66         0.39 
TCGA-C8-A131 TCGA-C8-A135 TCGA-C8-A1HK TCGA-C8-A1HL TCGA-C8-A26X TCGA-C8-A26Z 
        2.24         1.05        12.03        10.42         0.36         8.28 
TCGA-C8-A274 TCGA-C8-A27A TCGA-C8-A3M7 TCGA-C8-A8HQ TCGA-C8-A9FZ TCGA-D8-A13Z 
        9.53        12.20         0.03        12.49        19.46        20.88 
TCGA-D8-A142 TCGA-D8-A146 TCGA-D8-A1J8 TCGA-D8-A1JC TCGA-D8-A1JE TCGA-D8-A1JF 
       13.97        21.14        14.17        15.78        18.90        12.03 
TCGA-D8-A1JI TCGA-D8-A1JJ TCGA-D8-A1JP TCGA-D8-A1XF TCGA-D8-A1XG TCGA-D8-A1XM 
       18.97        20.09        21.01        15.22        14.73        17.69 
TCGA-D8-A1XQ TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XU TCGA-D8-A1XV TCGA-D8-A1XY 
       16.41        15.85        16.31        12.99        15.16        16.54 
TCGA-D8-A1Y1 TCGA-D8-A1Y3 TCGA-D8-A27G TCGA-D8-A27I TCGA-D8-A27M TCGA-D8-A27R 
        9.93        14.14        13.45        14.43        13.48        10.09 
TCGA-D8-A27T TCGA-D8-A27W TCGA-D8-A73U TCGA-D8-A73W TCGA-E2-A107 TCGA-E2-A109 
       13.08        12.26        16.18         8.02        34.42        46.59 
TCGA-E2-A10C TCGA-E2-A10E TCGA-E2-A14O TCGA-E2-A14Q TCGA-E2-A14T TCGA-E2-A14V 
       40.11        28.44        44.68        38.24        33.30        34.26 
TCGA-E2-A14Y TCGA-E2-A152 TCGA-E2-A154 TCGA-E2-A15A TCGA-E2-A15E TCGA-E2-A15P 
       28.60        27.12        19.43        23.34        20.71        19.56 
TCGA-E2-A15S TCGA-E2-A1AZ TCGA-E2-A1IH TCGA-E2-A1L8 TCGA-E2-A1LA TCGA-E2-A1LG 
       14.07        60.53        33.73        39.62        24.59        18.87 
TCGA-E2-A1LL TCGA-E2-A2P5 TCGA-E2-A56Z TCGA-E2-A576 TCGA-E9-A1N4 TCGA-E9-A1N6 
       43.04        16.93         8.28        34.29        32.88        13.48 
TCGA-E9-A1N9 TCGA-E9-A1NA TCGA-E9-A1NI TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R4 
       13.12        36.56         9.86        34.95         2.56         6.12 
TCGA-E9-A1R5 TCGA-E9-A1R7 TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RG TCGA-E9-A226 
        3.02        21.21        32.09        40.24        21.27        34.13 
TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A244 TCGA-E9-A247 
       39.09        22.75        12.89        23.51         0.69        27.22 
TCGA-E9-A249 TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A3HO TCGA-E9-A3X8 TCGA-E9-A54Y 
        7.13         0.72        29.72        26.07        15.72        23.84 
TCGA-E9-A5FK TCGA-E9-A5UP TCGA-EW-A1IW TCGA-EW-A1J6 TCGA-EW-A1OY TCGA-EW-A1OZ 
       14.70        14.40        12.20        28.77        29.85        40.41 
TCGA-EW-A1P3 TCGA-EW-A1P5 TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PH 
       52.96        23.11         6.15        13.94        10.52        19.96 
TCGA-EW-A2FR TCGA-EW-A2FV TCGA-EW-A3U0 TCGA-GI-A2C8 TCGA-GM-A3NW TCGA-GM-A3NY 
       55.00        25.91        17.49         7.40       110.50        38.20 
TCGA-JL-A3YX TCGA-LL-A5YL TCGA-LL-A5YM TCGA-LL-A5YP TCGA-LL-A6FP TCGA-LL-A8F5 
       11.57        17.06        15.32        14.79        22.26        14.73 
TCGA-LL-A9Q3 TCGA-OL-A5D7 TCGA-OL-A5RW TCGA-OL-A66K TCGA-OL-A66N TCGA-PE-A5DD 
       14.07        58.52        36.36        41.92        26.04        64.21 
TCGA-PL-A8LX TCGA-S3-A6ZF TCGA-S3-A6ZG TCGA-S3-A6ZH TCGA-UL-AAZ6 TCGA-WT-AB41 
        0.16        16.50        13.12        16.93        17.03        52.96 
TCGA-WT-AB44 TCGA-XX-A89A TCGA-Z7-A8R5 
       29.03        16.04       108.07 

$`DEL PEAK  2(1P22.1) WILD-TYPE`
TCGA-3C-AAAU TCGA-3C-AALJ TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT0 TCGA-5L-AAT1 
      129.14        42.81        40.14        11.44        48.56        48.36 
TCGA-A1-A0SB TCGA-A1-A0SE TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI TCGA-A1-A0SJ 
        8.52        43.43        14.27        47.24        20.88        13.68 
TCGA-A1-A0SM TCGA-A1-A0SP TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04P TCGA-A2-A04Q 
        7.96        19.20        18.21       104.81        18.02        78.41 
TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04V TCGA-A2-A04W TCGA-A2-A04X TCGA-A2-A0CK 
       73.84        87.25        63.12       101.98        55.43       136.73 
TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CP TCGA-A2-A0CQ TCGA-A2-A0CR TCGA-A2-A0CU 
       99.12        24.79        92.48        88.60       107.93         5.19 
TCGA-A2-A0CV TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0EM 
       98.99        67.33        34.55        33.76        61.58       101.72 
TCGA-A2-A0EP TCGA-A2-A0ER TCGA-A2-A0ES TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW 
      107.61        74.40        72.00        34.29        31.82        61.94 
TCGA-A2-A0EX TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SW TCGA-A2-A0SX TCGA-A2-A0SY 
       24.72        99.19        54.64        44.88        50.43        44.28 
TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0T7 
       17.13         8.38        49.84        17.46        18.90        20.75 
TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YF TCGA-A2-A0YI TCGA-A2-A0YK TCGA-A2-A0YL 
       32.55        25.28        50.47        49.48        19.33        48.46 
TCGA-A2-A0YM TCGA-A2-A1FV TCGA-A2-A1FX TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G1 
       31.73        23.47        60.72        22.45        20.25        19.20 
TCGA-A2-A1G4 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25A TCGA-A2-A25B TCGA-A2-A25D 
       19.56        16.47        52.47       107.70        42.44        18.15 
TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KD TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XV 
      105.34        10.59        39.65        33.93        83.01        32.75 
TCGA-A2-A3XW TCGA-A2-A3XX TCGA-A2-A3XY TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4RX 
       49.48        47.31        34.98        38.37         7.30        24.39 
TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A7-A0CD TCGA-A7-A0CE TCGA-A7-A0CG 
       21.30        23.21        26.96        38.30        35.31        34.29 
TCGA-A7-A0CH TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A13D TCGA-A7-A13F 
       35.47        37.45        35.67        33.11        31.73        25.15 
TCGA-A7-A13G TCGA-A7-A13H TCGA-A7-A26F TCGA-A7-A26G TCGA-A7-A26H TCGA-A7-A26I 
       23.61        29.56        24.26        23.74        23.80        21.73 
TCGA-A7-A26J TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3RF TCGA-A7-A425 
       20.61        11.34        10.59        10.29        13.41        14.70 
TCGA-A7-A426 TCGA-A7-A4SB TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A5ZV TCGA-A7-A5ZW 
       11.97        13.74        14.50        21.17        12.10        10.72 
TCGA-A7-A5ZX TCGA-A7-A6VV TCGA-A7-A6VW TCGA-A7-A6VX TCGA-A8-A06P TCGA-A8-A06Q 
       11.05        10.29         9.37        10.42        13.02         1.02 
TCGA-A8-A06R TCGA-A8-A06X TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A079 
       17.98        31.00         1.02        17.03        53.98         9.01 
TCGA-A8-A07E TCGA-A8-A07J TCGA-A8-A07O TCGA-A8-A07P TCGA-A8-A07S TCGA-A8-A07U 
       19.99        12.00         9.99        10.98         7.99        24.99 
TCGA-A8-A07W TCGA-A8-A07Z TCGA-A8-A082 TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A 
        9.99        45.07        18.05        36.95        13.02         0.99 
TCGA-A8-A08C TCGA-A8-A08O TCGA-A8-A08T TCGA-A8-A08Z TCGA-A8-A091 TCGA-A8-A093 
       28.96        31.00       112.08        40.01        33.01        17.95 
TCGA-A8-A095 TCGA-A8-A097 TCGA-A8-A09K TCGA-A8-A09M TCGA-A8-A09Q TCGA-A8-A09T 
       41.98        12.00        29.98        33.07        25.02        19.04 
TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A0A7 TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23G 
       15.02         0.99         0.99        38.04         0.95        10.85 
TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2FB TCGA-AC-A2FF TCGA-AC-A2FG 
        5.72         1.48        38.53        40.57        55.43        36.99 
TCGA-AC-A2FK TCGA-AC-A2FO TCGA-AC-A2QH TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3HN 
       38.79        50.70        33.04         0.92         2.27        16.31 
TCGA-AC-A3QP TCGA-AC-A3TN TCGA-AC-A3W5 TCGA-AC-A3W6 TCGA-AC-A3YI TCGA-AC-A3YJ 
       22.19        14.99        16.57        19.79        23.24        24.79 
TCGA-AC-A5XS TCGA-AC-A62X TCGA-AC-A62Y TCGA-AC-A6IV TCGA-AC-A6IW TCGA-AC-A6IX 
        1.55        13.71        17.42        18.67        13.58        12.26 
TCGA-AC-A6NO TCGA-AC-A7VB TCGA-AC-A7VC TCGA-AC-A8OQ TCGA-AC-A8OR TCGA-AC-A8OS 
        1.68         8.22         0.03         1.12         1.32         2.30 
TCGA-AN-A049 TCGA-AN-A04D TCGA-AN-A0AL TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0FF 
        0.62         1.71         6.51         0.33         0.33         5.65 
TCGA-AN-A0FJ TCGA-AN-A0FL TCGA-AN-A0FS TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FX 
        7.96         7.59         6.28         0.33         0.36         0.33 
TCGA-AN-A0FY TCGA-AN-A0FZ TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XR TCGA-AN-A0XT 
        0.33         0.33         0.33         0.33         0.33         0.33 
TCGA-AN-A0XV TCGA-AO-A03M TCGA-AO-A03O TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03U 
        5.33        61.35        81.63        68.75        47.87        58.95 
TCGA-AO-A03V TCGA-AO-A0J2 TCGA-AO-A0J4 TCGA-AO-A0J6 TCGA-AO-A0J8 TCGA-AO-A0J9 
       29.13        32.78        52.18        37.48        22.36        53.03 
TCGA-AO-A0JB TCGA-AO-A0JC TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JG TCGA-AO-A0JJ 
       50.70        50.86        76.77        21.37        26.24        62.04 
TCGA-AO-A0JL TCGA-AO-A0JM TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 TCGA-AO-A129 
       55.33        71.80        99.25       108.72       106.78       108.03 
TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A12E TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO 
       98.27        64.04        57.30        41.62        28.37        14.73 
TCGA-AO-A1KT TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AQ-A54N 
       17.79        26.93       130.09        15.62        32.52         2.56 
TCGA-AQ-A54O TCGA-AR-A0TR TCGA-AR-A0TS TCGA-AR-A0TV TCGA-AR-A0TX TCGA-AR-A0TY 
       32.91         5.26        74.79        42.35        64.83        55.86 
TCGA-AR-A0TZ TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A0U3 TCGA-AR-A0U4 TCGA-AR-A1AH 
      107.24        65.36       101.95       114.02        85.97        75.55 
TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AM TCGA-AR-A1AN 
       61.84        52.77        51.25        48.82        76.11        43.73 
TCGA-AR-A1AO TCGA-AR-A1AQ TCGA-AR-A1AR TCGA-AR-A1AS TCGA-AR-A1AV TCGA-AR-A1AX 
       43.56        43.07        17.23        37.81        61.28        62.14 
TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24K TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24N 
       33.73       160.90        50.89        94.22        96.89        78.51 
TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24Q TCGA-AR-A24U TCGA-AR-A24V TCGA-AR-A24X 
       84.20         2.76       104.28        53.36        85.35        83.77 
TCGA-AR-A251 TCGA-AR-A256 TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LM 
       78.48        93.83       143.21        20.25        62.86        52.11 
TCGA-AR-A2LN TCGA-AR-A2LQ TCGA-AR-A2LR TCGA-AR-A5QM TCGA-AR-A5QP TCGA-AR-A5QQ 
       38.17        40.54        20.38        54.74        20.45        10.59 
TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0IA TCGA-B6-A0IC TCGA-B6-A0IE 
       77.62       143.38       149.59       220.90        50.70        65.72 
TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IP TCGA-B6-A0IQ 
      176.98        18.77       126.12        84.59       110.93       140.88 
TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RM TCGA-B6-A0RN 
      211.56        68.45       189.01       234.28        78.02       172.96 
TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RU TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT 
      140.48        89.46       131.21       157.41        97.48       188.68 
TCGA-B6-A0WX TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 
       21.47       129.57       129.70       186.48        28.27        68.94 
TCGA-B6-A1KC TCGA-B6-A2IU TCGA-B6-A401 TCGA-B6-A408 TCGA-B6-A40C TCGA-BH-A0AV 
       43.59       170.17        85.35        68.12        71.15        59.84 
TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0B0 TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B9 
       20.45        25.55        46.95        39.55        39.16        51.68 
TCGA-BH-A0BC TCGA-BH-A0BG TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BP TCGA-BH-A0BQ 
       32.02        24.85        61.68        35.67        48.69        27.19 
TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BT TCGA-BH-A0BW TCGA-BH-A0BZ TCGA-BH-A0C3 
       53.69        53.95        45.57        11.67        49.05        48.13 
TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL 
       31.17        23.44        38.01        22.13        13.91        48.23 
TCGA-BH-A0DO TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV 
       17.26        15.65         3.22         2.56        38.47        67.86 
TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E6 TCGA-BH-A0E7 TCGA-BH-A0EA TCGA-BH-A0EE 
        4.41        15.68         9.63        44.81        32.58        31.00 
TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 
       24.43        30.35        15.16        37.78        35.51        24.56 
TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HO TCGA-BH-A0HP 
       52.96        26.50        20.38         5.85         2.50        13.61 
TCGA-BH-A0HQ TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0RX TCGA-BH-A0W5 TCGA-BH-A0W7 
       36.85        27.25        50.79         5.59        42.35        44.81 
TCGA-BH-A0WA TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18Q 
       23.05         2.01         7.23        72.56        37.74        55.63 
TCGA-BH-A18R TCGA-BH-A18S TCGA-BH-A1EO TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EX 
       37.55        66.05        91.99       113.82        82.85        49.58 
TCGA-BH-A1F0 TCGA-BH-A1F2 TCGA-BH-A1F5 TCGA-BH-A1FB TCGA-BH-A1FC TCGA-BH-A1FD 
       25.81        31.53        89.16       120.62       114.15        33.17 
TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A201 
      122.89        36.92        63.35       144.59        72.07        28.14 
TCGA-BH-A202 TCGA-BH-A204 TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A28Q 
       26.14        83.31        57.83       130.16        10.65         6.44 
TCGA-BH-A2L8 TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A6R8 TCGA-BH-A6R9 TCGA-BH-A8FY 
       20.12       109.28         8.94         9.63         5.26         9.70 
TCGA-BH-A8FZ TCGA-BH-A8G0 TCGA-BH-AB28 TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12O 
       18.87        21.76         9.44        11.77        11.77        12.66 
TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12U TCGA-C8-A12V TCGA-C8-A130 TCGA-C8-A132 
       11.77        12.66        12.66        12.66         3.16         1.87 
TCGA-C8-A134 TCGA-C8-A137 TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HG 
        1.12         4.11         4.08        12.33        10.92        11.34 
TCGA-C8-A1HI TCGA-C8-A1HJ TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A26V TCGA-C8-A26W 
       11.28         0.16         2.30         3.25         0.30         0.23 
TCGA-C8-A26Y TCGA-C8-A273 TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A27B TCGA-C8-A3M8 
        0.43         9.67         0.03         9.50         0.99         0.23 
TCGA-C8-A8HP TCGA-C8-A8HR TCGA-D8-A13Y TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A143 
       13.02        13.41        11.90        13.25        20.58        14.17 
TCGA-D8-A145 TCGA-D8-A147 TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JD 
       13.48        19.20        17.49        16.50        18.71        18.15 
TCGA-D8-A1JG TCGA-D8-A1JH TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JN 
       12.03        14.01        20.12        20.09        19.40        20.38 
TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X7 
       12.20        13.32        14.70        18.58        17.79        16.73 
TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XD 
       25.74        23.90        27.58        18.15        12.39        17.16 
TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XL TCGA-D8-A1XO TCGA-D8-A1XT TCGA-D8-A1XW 
       21.83        14.50        19.92        15.55         6.35        12.66 
TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A1Y2 TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27H 
       15.32        15.52        14.24        17.42        16.04        13.05 
TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27V TCGA-D8-A3Z5 
        9.44        16.41         4.80         0.76        12.53        33.37 
TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-D8-A73X TCGA-E2-A105 TCGA-E2-A108 TCGA-E2-A10A 
       18.51        21.67        12.10        43.00        27.52        40.41 
TCGA-E2-A10B TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14P TCGA-E2-A14R TCGA-E2-A14S 
       37.51        28.87        47.15        40.96        38.60        33.17 
TCGA-E2-A14U TCGA-E2-A14W TCGA-E2-A14X TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A153 
       43.33        32.02        31.96        18.51        25.41        23.24 
TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A158 TCGA-E2-A159 TCGA-E2-A15C TCGA-E2-A15D 
       21.04        23.87        14.79        25.05        22.82        17.29 
TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K 
       21.63        18.21        12.92        17.42        19.40         9.04 
TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15O TCGA-E2-A15R TCGA-E2-A15T TCGA-E2-A1B0 
       20.58        11.05        13.02        17.06        14.99        53.62 
TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BC TCGA-E2-A1BD 
       53.03        33.01        32.35        28.50        16.47        17.10 
TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IK 
       38.30        37.41        32.78        33.70        28.44        22.65 
TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IO TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L7 
        3.88        22.19        20.98        11.08        54.18        27.42 
TCGA-E2-A1L9 TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK 
       19.66        40.47        28.90       106.75       102.61         8.75 
TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A570 TCGA-E2-A573 TCGA-E2-A574 TCGA-E2-A9RU 
        5.52        15.72        30.61        34.92        26.56        12.85 
TCGA-E9-A1N3 TCGA-E9-A1N5 TCGA-E9-A1N8 TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NE 
       34.82        36.82        12.00        39.55        12.59        35.77 
TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R6 TCGA-E9-A1RA 
       35.24        25.84        11.90        28.27         2.76        32.09 
TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RH TCGA-E9-A1RI TCGA-E9-A227 
        1.12        34.65         6.58        34.59        35.64        32.05 
TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22D TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A248 
       12.53        13.32        41.03        20.71        17.06         1.94 
TCGA-E9-A24A TCGA-E9-A2JT TCGA-E9-A3Q9 TCGA-E9-A3QA TCGA-E9-A54X TCGA-E9-A5FL 
       24.56         0.76        18.41        30.18        12.33         0.79 
TCGA-E9-A5UO TCGA-E9-A6HE TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 
       13.81        15.39        39.72         8.48        18.21        18.90 
TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J5 TCGA-EW-A1OV TCGA-EW-A1OW TCGA-EW-A1OX 
       13.25        16.57        15.68        25.94        22.82        29.95 
TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P4 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1P8 
       41.13        39.78        29.82        18.48        30.08         7.86 
TCGA-EW-A1PA TCGA-EW-A1PB TCGA-EW-A1PF TCGA-EW-A1PG TCGA-EW-A2FS TCGA-EW-A2FW 
       18.90        19.99        14.43        34.55        52.73        22.09 
TCGA-EW-A3E8 TCGA-EW-A423 TCGA-EW-A424 TCGA-GI-A2C9 TCGA-GM-A2D9 TCGA-GM-A2DA 
       34.03        10.16        23.51       109.87        59.57       216.76 
TCGA-GM-A2DB TCGA-GM-A2DC TCGA-GM-A2DD TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A2DI 
       79.10        83.34        75.02        70.85        72.10        85.15 
TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A2DO TCGA-GM-A3XG 
       86.96       115.69       106.06       101.62        85.35        43.73 
TCGA-GM-A3XL TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2NL 
       69.30        66.38        72.03        13.55        18.12         2.60 
TCGA-HN-A2OB TCGA-JL-A3YW TCGA-LD-A66U TCGA-LD-A74U TCGA-LD-A7W5 TCGA-LD-A7W6 
       62.43        11.84        21.24        13.22         7.10        13.28 
TCGA-LD-A9QF TCGA-LL-A440 TCGA-LL-A441 TCGA-LL-A442 TCGA-LL-A50Y TCGA-LL-A5YN 
       10.62        24.95        11.44        10.95        25.05        14.70 
TCGA-LL-A5YO TCGA-LL-A6FQ TCGA-LL-A6FR TCGA-LL-A73Y TCGA-LL-A73Z TCGA-LL-A740 
       14.47         2.63        16.08        15.68         7.46        14.50 
TCGA-LL-A7SZ TCGA-LL-A7T0 TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D6 
       14.70        12.36        27.91        22.39         2.10        36.30 
TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RU TCGA-OL-A5RV TCGA-OL-A5RX TCGA-OL-A5RY 
       31.99        58.62        40.08        34.92        28.87        24.72 
TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66L 
       22.32        20.38        26.70        23.47        65.62        42.77 
TCGA-OL-A66O TCGA-OL-A66P TCGA-OL-A6VO TCGA-OL-A6VQ TCGA-OL-A6VR TCGA-OL-A97C 
       17.36        14.07        28.21        19.73        40.11         8.91 
TCGA-PE-A5DC TCGA-PE-A5DE TCGA-PL-A8LY TCGA-PL-A8LZ TCGA-S3-AA0Z TCGA-S3-AA10 
       47.01        86.96         0.26         9.93        16.80        15.39 
TCGA-S3-AA11 TCGA-S3-AA12 TCGA-S3-AA14 TCGA-S3-AA15 TCGA-S3-AA17 TCGA-UU-A93S 
       13.84        15.35        14.96        13.84        13.94         3.81 
TCGA-W8-A86G TCGA-XX-A899 TCGA-Z7-A8R6 
       11.41        15.35       107.05 

  DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE 
                         0.03                          0.03 
  DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE 
                       162.05                        234.28 
  DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE 
                        23.11                         24.99 
[1] "0.0 - 162.1 (23.1)" "0.0 - 234.3 (25.0)"
[1] "hr=" "1.7"
D31V2, continuous
                               vv
clus                            STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  DEL PEAK  2(1P22.1) MUTATED        20       20        1        0       116
  DEL PEAK  2(1P22.1) WILD-TYPE      69       61        7        3       237
                               vv
clus                            STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  DEL PEAK  2(1P22.1) MUTATED          81         1         60         16
  DEL PEAK  2(1P22.1) WILD-TYPE       164         1         90         13
                               vv
clus                            STAGE IIIC STAGE IV STAGE TIS STAGE X
  DEL PEAK  2(1P22.1) MUTATED           26        9         0       5
  DEL PEAK  2(1P22.1) WILD-TYPE         37       11         1       8
D31V3, multiclass
            clus
vv           DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  STAGE I                             20                            69
  STAGE IA                            20                            61
  STAGE IB                             1                             7
  STAGE II                             0                             3
  STAGE IIA                          116                           237
  STAGE IIB                           81                           164
  STAGE III                            1                             1
  STAGE IIIA                          60                            90
  STAGE IIIB                          16                            13
  STAGE IIIC                          26                            37
  STAGE IV                             9                            11
  STAGE TIS                            0                             1
  STAGE X                              5                             8
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                             T1  T2  T3  T4
  DEL PEAK  2(1P22.1) MUTATED    67 224  42  24
  DEL PEAK  2(1P22.1) WILD-TYPE 205 392  88  16
D31V4, multiclass
    clus
vv   DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  T1                          67                           205
  T2                         224                           392
  T3                          42                            88
  T4                          24                            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                             N0  N1  N2  N3
  DEL PEAK  2(1P22.1) MUTATED   144 126  50  30
  DEL PEAK  2(1P22.1) WILD-TYPE 357 224  67  45
D31V5, multiclass
    clus
vv   DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  N0                         144                           357
  N1                         126                           224
  N2                          50                            67
  N3                          30                            45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D31V6, binary
                               cls
clus                              0   1
  DEL PEAK  2(1P22.1) MUTATED   298   9
  DEL PEAK  2(1P22.1) WILD-TYPE 581  12
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  2(1P22.1) MUTATED    298    9
  DEL PEAK  2(1P22.1) WILD-TYPE  581   12
   clus
vv  DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  0                         298                           581
  1                           9                            12
[1] 2 2
[1] FALSE
D31V7, binary
                               cls
clus                              0   1
  DEL PEAK  2(1P22.1) MUTATED   352   5
  DEL PEAK  2(1P22.1) WILD-TYPE 699   6
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  2(1P22.1) MUTATED    352    5
  DEL PEAK  2(1P22.1) WILD-TYPE  699    6
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  FEMALE                         352                           699
  MALE                             5                             6
[1] 2 2
[1] FALSE
                               vv
clus                            INFILTRATING CARCINOMA NOS
  DEL PEAK  2(1P22.1) MUTATED                            0
  DEL PEAK  2(1P22.1) WILD-TYPE                          1
                               vv
clus                            INFILTRATING DUCTAL CARCINOMA
  DEL PEAK  2(1P22.1) MUTATED                             270
  DEL PEAK  2(1P22.1) WILD-TYPE                           493
                               vv
clus                            INFILTRATING LOBULAR CARCINOMA
  DEL PEAK  2(1P22.1) MUTATED                               60
  DEL PEAK  2(1P22.1) WILD-TYPE                            132
                               vv
clus                            MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  DEL PEAK  2(1P22.1) MUTATED                     1                     0
  DEL PEAK  2(1P22.1) WILD-TYPE                   5                     4
                               vv
clus                            MIXED HISTOLOGY (PLEASE SPECIFY)
  DEL PEAK  2(1P22.1) MUTATED                                 11
  DEL PEAK  2(1P22.1) WILD-TYPE                               19
                               vv
clus                            MUCINOUS CARCINOMA OTHER  SPECIFY
  DEL PEAK  2(1P22.1) MUTATED                    5             10
  DEL PEAK  2(1P22.1) WILD-TYPE                 12             38
D31V8, multiclass
                                  clus
vv                                 DEL PEAK  2(1P22.1) MUTATED
  INFILTRATING CARCINOMA NOS                                 0
  INFILTRATING DUCTAL CARCINOMA                            270
  INFILTRATING LOBULAR CARCINOMA                            60
  MEDULLARY CARCINOMA                                        1
  METAPLASTIC CARCINOMA                                      0
  MIXED HISTOLOGY (PLEASE SPECIFY)                          11
  MUCINOUS CARCINOMA                                         5
  OTHER  SPECIFY                                            10
                                  clus
vv                                 DEL PEAK  2(1P22.1) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                   1
  INFILTRATING DUCTAL CARCINOMA                              493
  INFILTRATING LOBULAR CARCINOMA                             132
  MEDULLARY CARCINOMA                                          5
  METAPLASTIC CARCINOMA                                        4
  MIXED HISTOLOGY (PLEASE SPECIFY)                            19
  MUCINOUS CARCINOMA                                          12
  OTHER  SPECIFY                                              38
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D31V9, binary
                               cls
clus                              0   1
  DEL PEAK  2(1P22.1) MUTATED    98 259
  DEL PEAK  2(1P22.1) WILD-TYPE 190 515
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  2(1P22.1) MUTATED     98  259
  DEL PEAK  2(1P22.1) WILD-TYPE  190  515
     clus
vv    DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  NO                           98                           190
  YES                         259                           515
[1] 2 2
[1] FALSE
D31V10, continuous
                               vv
clus                            AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK  2(1P22.1) MUTATED                                  0    19
  DEL PEAK  2(1P22.1) WILD-TYPE                                1    41
                               vv
clus                            BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK  2(1P22.1) MUTATED                          49   246
  DEL PEAK  2(1P22.1) WILD-TYPE                       121   490
D31V11, multiclass
                                  clus
vv                                 DEL PEAK  2(1P22.1) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                           0
  ASIAN                                                     19
  BLACK OR AFRICAN AMERICAN                                 49
  WHITE                                                    246
                                  clus
vv                                 DEL PEAK  2(1P22.1) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                             1
  ASIAN                                                       41
  BLACK OR AFRICAN AMERICAN                                  121
  WHITE                                                      490
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D31V12, binary
                               cls
clus                              0   1
  DEL PEAK  2(1P22.1) MUTATED     8 284
  DEL PEAK  2(1P22.1) WILD-TYPE  30 574
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  2(1P22.1) MUTATED      8  284
  DEL PEAK  2(1P22.1) WILD-TYPE   30  574
                        clus
vv                       DEL PEAK  2(1P22.1) MUTATED
  HISPANIC OR LATINO                               8
  NOT HISPANIC OR LATINO                         284
                        clus
vv                       DEL PEAK  2(1P22.1) WILD-TYPE
  HISPANIC OR LATINO                                30
  NOT HISPANIC OR LATINO                           574
[1] 2 2
[1] FALSE

Clustering(32) Variable = DEL PEAK  3(2Q37.3) MUTATION ANALYSIS
D32V1, survival
                               sevent
clus2                             0   1
  DEL PEAK  3(2Q37.3) MUTATED   271  36
  DEL PEAK  3(2Q37.3) WILD-TYPE 645  92
  DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE 
                          307                           737 
  DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE 
                           36                            92 
$`DEL PEAK  3(2Q37.3) MUTATED`
TCGA-3C-AAAU TCGA-3C-AALJ TCGA-A1-A0SH TCGA-A1-A0SK TCGA-A1-A0SN TCGA-A1-A0SO 
      129.14        42.81        47.24        31.79        39.32        28.01 
TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04Y TCGA-A2-A0CS TCGA-A2-A0CT TCGA-A2-A0CU 
       73.84        87.25        36.13        75.55        75.25         5.19 
TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0D0 TCGA-A2-A0EO TCGA-A2-A0EQ TCGA-A2-A0ET 
       98.99       107.93        67.33        80.28        79.76        35.05 
TCGA-A2-A0EU TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0YH TCGA-A2-A0YJ TCGA-A2-A0YT 
       34.29        27.12        44.88        21.67        18.61        23.77 
TCGA-A2-A1FW TCGA-A2-A1FX TCGA-A2-A1G1 TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XZ 
       17.36        60.72        19.20        33.93        83.01        50.37 
TCGA-A2-A4RX TCGA-A7-A0CE TCGA-A7-A0DA TCGA-A7-A0DC TCGA-A7-A13E TCGA-A7-A13F 
       24.39        35.31        35.67        29.79        20.19        25.15 
TCGA-A7-A26F TCGA-A7-A2KD TCGA-A7-A3J1 TCGA-A7-A4SE TCGA-A7-A56D TCGA-A7-A6VW 
       24.26        22.32        11.28        21.17        14.73         9.37 
TCGA-A7-A6VX TCGA-A7-A6VY TCGA-A8-A06Q TCGA-A8-A06T TCGA-A8-A06U TCGA-A8-A06X 
       10.42         8.75         1.02        53.06        29.03        31.00 
TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A079 TCGA-A8-A07B TCGA-A8-A07F TCGA-A8-A07L 
       26.01         1.02         9.01        43.00        18.97        32.05 
TCGA-A8-A07P TCGA-A8-A07U TCGA-A8-A07W TCGA-A8-A08B TCGA-A8-A08I TCGA-A8-A08R 
       10.98        24.99         9.99        38.01        12.00         0.99 
TCGA-A8-A08S TCGA-A8-A08X TCGA-A8-A092 TCGA-A8-A097 TCGA-A8-A09A TCGA-A8-A09B 
       33.01        43.00        30.97        12.00         9.99        12.00 
TCGA-A8-A09C TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09M TCGA-A8-A09N TCGA-A8-A09Q 
        1.02        49.05        45.07        33.07         1.02        25.02 
TCGA-A8-A09T TCGA-A8-A0A2 TCGA-A8-A0A6 TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-AC-A23E 
       19.04        19.04        21.04        27.02        17.03         2.37 
TCGA-AC-A2BM TCGA-AC-A2FF TCGA-AC-A2FM TCGA-AC-A2QH TCGA-AC-A3W5 TCGA-AC-A62V 
       99.35        55.43        26.04        33.04        16.57        11.44 
TCGA-AC-A6IW TCGA-AC-A7VC TCGA-AN-A03Y TCGA-AN-A049 TCGA-AN-A04D TCGA-AN-A0AJ 
       13.58         0.03         0.33         0.62         1.71         9.96 
TCGA-AN-A0AL TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FK TCGA-AN-A0FL 
        6.51         0.33         0.33         0.33         7.00         7.59 
TCGA-AN-A0FT TCGA-AN-A0FZ TCGA-AN-A0XP TCGA-AN-A0XT TCGA-AO-A03M TCGA-AO-A03P 
        7.04         0.33         0.30         0.33        61.35        95.70 
TCGA-AO-A03T TCGA-AO-A03V TCGA-AO-A0J3 TCGA-AO-A0J6 TCGA-AO-A0JB TCGA-AO-A0JD 
       47.87        29.13        21.40        37.48        50.70        72.00 
TCGA-AO-A0JE TCGA-AO-A0JI TCGA-AO-A0JL TCGA-AO-A12A TCGA-AO-A12F TCGA-AO-A1KQ 
       76.77        50.24        55.33        90.58        48.36        61.87 
TCGA-AO-A1KS TCGA-AO-A1KT TCGA-AQ-A04J TCGA-AQ-A0Y5 TCGA-AQ-A54N TCGA-AQ-A54O 
        0.53        17.79        26.93         5.65         2.56        32.91 
TCGA-AR-A0TP TCGA-AR-A0TS TCGA-AR-A0TV TCGA-AR-A0TY TCGA-AR-A0U1 TCGA-AR-A0U3 
      111.32        74.79        42.35        55.86       101.95       114.02 
TCGA-AR-A0U4 TCGA-AR-A1AM TCGA-AR-A1AN TCGA-AR-A1AS TCGA-AR-A1AY TCGA-AR-A24H 
       85.97        76.11        43.73        37.81        33.73       160.90 
TCGA-AR-A24K TCGA-AR-A24R TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A251 TCGA-AR-A2LK 
       50.89        87.22        85.35        50.96        78.48        54.21 
TCGA-B6-A0I1 TCGA-B6-A0I9 TCGA-B6-A0RE TCGA-B6-A0RH TCGA-B6-A0RL TCGA-B6-A0RS 
       77.62        12.13       211.56       189.01        81.17       100.70 
TCGA-B6-A0RU TCGA-B6-A0X1 TCGA-B6-A1KC TCGA-B6-A1KI TCGA-B6-A1KN TCGA-B6-A408 
      131.21       186.48        43.59        73.51       139.17        68.12 
TCGA-BH-A0AV TCGA-BH-A0AW TCGA-BH-A0B2 TCGA-BH-A0B3 TCGA-BH-A0BA TCGA-BH-A0BL 
       59.84        20.45        40.83        39.55        37.22        44.05 
TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0C7 TCGA-BH-A0DH TCGA-BH-A0E0 TCGA-BH-A0E2 
       45.57        49.94        42.90        38.01         4.41        14.30 
TCGA-BH-A0E6 TCGA-BH-A0EB TCGA-BH-A0EE TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0HU 
        9.63        24.49        31.00        41.00        52.96        12.89 
TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0WA TCGA-BH-A18I TCGA-BH-A18K TCGA-BH-A18Q 
       51.32        27.25        23.05         7.23        90.84        55.63 
TCGA-BH-A18V TCGA-BH-A1EN TCGA-BH-A1ES TCGA-BH-A1EV TCGA-BH-A1F6 TCGA-BH-A1FC 
       51.16        69.93       113.82        12.00        97.48       114.15 
TCGA-BH-A1FM TCGA-BH-A1FN TCGA-BH-A202 TCGA-BH-A5IZ TCGA-BH-A6R9 TCGA-C8-A12L 
       45.63        72.07        26.14        18.64         5.26        11.93 
TCGA-C8-A12P TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A130 TCGA-C8-A134 TCGA-C8-A137 
       11.77        12.66        12.66         3.16         1.12         4.11 
TCGA-C8-A138 TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HM 
        4.08        10.92        11.34         0.16        12.03         2.30 
TCGA-C8-A26W TCGA-C8-A26Z TCGA-C8-A27A TCGA-C8-A3M7 TCGA-D8-A13Y TCGA-D8-A13Z 
        0.23         8.28        12.20         0.03        11.90        20.88 
TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A146 TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JI 
       13.97        14.17        21.14        16.50        18.71        18.97 
TCGA-D8-A1JL TCGA-D8-A1JP TCGA-D8-A1X6 TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XJ 
       20.09        21.01        17.79        27.58        18.15        21.83 
TCGA-D8-A1XQ TCGA-D8-A1XR TCGA-D8-A1XV TCGA-D8-A1XY TCGA-D8-A1Y1 TCGA-D8-A1Y3 
       16.41        15.85        15.16        16.54         9.93        14.14 
TCGA-D8-A27R TCGA-D8-A27T TCGA-D8-A27W TCGA-E2-A109 TCGA-E2-A14N TCGA-E2-A14O 
       10.09        13.08        12.26        46.59        47.15        44.68 
TCGA-E2-A14R TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A152 TCGA-E2-A159 
       38.60        31.96        28.60        18.51        27.12        25.05 
TCGA-E2-A15E TCGA-E2-A15H TCGA-E2-A15S TCGA-E2-A1AZ TCGA-E2-A1BD TCGA-E2-A1IH 
       20.71        12.92        14.07        60.53        17.10        33.73 
TCGA-E2-A1II TCGA-E2-A1IN TCGA-E2-A1L7 TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK 
       33.70        22.19        27.42       106.75       102.61         8.75 
TCGA-E2-A2P5 TCGA-E2-A573 TCGA-E9-A1N4 TCGA-E9-A1N6 TCGA-E9-A1N9 TCGA-E9-A1NA 
       16.93        34.92        32.88        13.48        13.12        36.56 
TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NF TCGA-E9-A1NI TCGA-E9-A1RA TCGA-E9-A1RB 
       39.55        12.59        35.24         9.86        32.09        32.09 
TCGA-E9-A1RE TCGA-E9-A1RI TCGA-E9-A228 TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A249 
       34.65        35.64        12.53        12.89        23.51         7.13 
TCGA-E9-A3HO TCGA-E9-A3QA TCGA-E9-A3X8 TCGA-E9-A54Y TCGA-E9-A5FL TCGA-E9-A5UP 
       26.07        30.18        15.72        23.84         0.79        14.40 
TCGA-EW-A1J1 TCGA-EW-A1J6 TCGA-EW-A1OW TCGA-EW-A1OY TCGA-EW-A1P5 TCGA-EW-A1P8 
       18.90        28.77        22.82        29.85        23.11         7.86 
TCGA-EW-A1PC TCGA-EW-A1PE TCGA-EW-A1PF TCGA-EW-A1PH TCGA-EW-A2FR TCGA-EW-A2FV 
        6.15        10.52        14.43        19.96        55.00        25.91 
TCGA-EW-A2FW TCGA-EW-A3U0 TCGA-EW-A423 TCGA-GI-A2C9 TCGA-GM-A2DD TCGA-GM-A2DF 
       22.09        17.49        10.16       109.87        75.02        70.85 
TCGA-GM-A2DH TCGA-GM-A4E0 TCGA-HN-A2NL TCGA-JL-A3YX TCGA-LL-A6FR TCGA-LL-A7T0 
       72.10        72.03         2.60        11.57        16.08        12.36 
TCGA-LL-A8F5 TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66I 
       14.73        58.52        31.99        22.32        20.38        23.47 
TCGA-OL-A6VO TCGA-PE-A5DC TCGA-PL-A8LX TCGA-S3-A6ZH TCGA-S3-AA14 TCGA-UL-AAZ6 
       28.21        47.01         0.16        16.93        14.96        17.03 
TCGA-XX-A89A 
       16.04 

$`DEL PEAK  3(2Q37.3) WILD-TYPE`
TCGA-3C-AALI TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT0 TCGA-5L-AAT1 TCGA-5T-A9QA 
      131.67        40.14        11.44        48.56        48.36         9.96 
TCGA-A1-A0SB TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SI 
        8.52        14.37        43.43        48.10        14.27        20.88 
TCGA-A1-A0SJ TCGA-A1-A0SM TCGA-A1-A0SP TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04P 
       13.68         7.96        19.20        18.21       104.81        18.02 
TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04V TCGA-A2-A04W TCGA-A2-A04X TCGA-A2-A0CK 
       78.41       121.94        63.12       101.98        55.43       136.73 
TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CQ TCGA-A2-A0CR 
       99.12        24.79       114.81        92.48        88.60       107.93 
TCGA-A2-A0CX TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0D4 TCGA-A2-A0EM 
       56.81        34.55        33.76        61.58        25.22       101.72 
TCGA-A2-A0EN TCGA-A2-A0EP TCGA-A2-A0ER TCGA-A2-A0ES TCGA-A2-A0EV TCGA-A2-A0EW 
      134.40       107.61        74.40        72.00        31.82        61.94 
TCGA-A2-A0EX TCGA-A2-A0EY TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SX TCGA-A2-A0SY 
       24.72        63.29        99.19        54.64        50.43        44.28 
TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T4 TCGA-A2-A0T5 
       17.52        17.13         8.38        49.84        20.52        17.46 
TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YE TCGA-A2-A0YF 
       18.90        20.75        32.55        25.28        18.21        50.47 
TCGA-A2-A0YG TCGA-A2-A0YI TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A0YM TCGA-A2-A1FV 
       21.90        49.48        19.33        48.46        31.73        23.47 
TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G4 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25A 
       22.45        20.25        19.56        16.47        52.47       107.70 
TCGA-A2-A25B TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC 
       42.44        17.19        18.15       105.34        10.59        20.88 
TCGA-A2-A3KD TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX TCGA-A2-A3XY 
       39.65        29.98        32.75        49.48        47.31        34.98 
TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S2 
       38.37         7.30        21.30        23.21        26.96        21.14 
TCGA-A2-A4S3 TCGA-A7-A0CD TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0CJ TCGA-A7-A0D9 
       21.90        38.30        34.29        35.47        30.61        37.45 
TCGA-A7-A0DB TCGA-A7-A13D TCGA-A7-A13G TCGA-A7-A13H TCGA-A7-A26E TCGA-A7-A26G 
       33.11        31.73        23.61        29.56        31.36        23.74 
TCGA-A7-A26H TCGA-A7-A26I TCGA-A7-A26J TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J0 
       23.80        21.73        20.61        11.34        10.59        10.29 
TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A426 TCGA-A7-A4SA TCGA-A7-A4SB TCGA-A7-A4SD 
       13.41        14.70        11.97        14.93        13.74        14.50 
TCGA-A7-A4SF TCGA-A7-A5ZV TCGA-A7-A5ZW TCGA-A7-A5ZX TCGA-A7-A6VV TCGA-A8-A06O 
       17.92        12.10        10.72        11.05        10.29        13.02 
TCGA-A8-A06P TCGA-A8-A06R TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A07E TCGA-A8-A07G 
       13.02        17.98        17.03        53.98        19.99        18.97 
TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07O TCGA-A8-A07R TCGA-A8-A07S TCGA-A8-A07Z 
       14.01        12.00         9.99         8.98         7.99        45.07 
TCGA-A8-A082 TCGA-A8-A084 TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08C 
       18.05        15.06        36.95        13.02         0.99        28.96 
TCGA-A8-A08F TCGA-A8-A08G TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08O TCGA-A8-A08P 
       33.01        19.96        37.05         9.99        31.00        31.00 
TCGA-A8-A08T TCGA-A8-A08Z TCGA-A8-A091 TCGA-A8-A093 TCGA-A8-A095 TCGA-A8-A099 
      112.08        40.01        33.01        17.95        41.98         9.99 
TCGA-A8-A09D TCGA-A8-A09K TCGA-A8-A09R TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A09X 
       50.04        29.98         8.98        15.02         0.99        14.01 
TCGA-A8-A0A1 TCGA-A8-A0A4 TCGA-A8-A0A7 TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23G 
       12.00        13.02         0.99        38.04         0.95        10.85 
TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2FB TCGA-AC-A2FG TCGA-AC-A2FK 
        5.72         1.48        38.53        40.57        36.99        38.79 
TCGA-AC-A2FO TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3HN TCGA-AC-A3OD 
       50.70         0.92         2.27        32.45        16.31        14.83 
TCGA-AC-A3QP TCGA-AC-A3TN TCGA-AC-A3W6 TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A5XS 
       22.19        14.99        19.79        23.24        24.79         1.55 
TCGA-AC-A62X TCGA-AC-A62Y TCGA-AC-A6IV TCGA-AC-A6IX TCGA-AC-A6NO TCGA-AC-A7VB 
       13.71        17.42        18.67        12.26         1.68         8.22 
TCGA-AC-A8OP TCGA-AC-A8OQ TCGA-AC-A8OR TCGA-AC-A8OS TCGA-AN-A03X TCGA-AN-A041 
       20.19         1.12         1.32         2.30         0.33         0.23 
TCGA-AN-A046 TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A0AK TCGA-AN-A0AM TCGA-AN-A0FD 
        0.33         2.96         1.78         7.36         0.16         6.44 
TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FV TCGA-AN-A0FW 
        5.65         7.96         7.17         6.28         0.33         0.36 
TCGA-AN-A0FX TCGA-AN-A0FY TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XR 
        0.33         0.33         0.33         0.33        12.33         0.33 
TCGA-AN-A0XS TCGA-AN-A0XU TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03L TCGA-AO-A03N 
        0.33         0.33         5.33         5.59        80.28        66.77 
TCGA-AO-A03O TCGA-AO-A03R TCGA-AO-A03U TCGA-AO-A0J2 TCGA-AO-A0J4 TCGA-AO-A0J5 
       81.63        68.75        58.95        32.78        52.18        26.04 
TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JC TCGA-AO-A0JF 
       20.32        22.36        53.03        21.53        50.86        21.37 
TCGA-AO-A0JG TCGA-AO-A0JJ TCGA-AO-A0JM TCGA-AO-A124 TCGA-AO-A125 TCGA-AO-A126 
       26.24        62.04        71.80       102.58        99.25       108.72 
TCGA-AO-A128 TCGA-AO-A129 TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A12E TCGA-AO-A12G 
      106.78       108.03        98.27        64.04        57.30        41.62 
TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KR TCGA-AQ-A04H TCGA-AQ-A04L 
       28.37        14.73        82.62        70.39        24.79       130.09 
TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AQ-A7U7 TCGA-AR-A0TQ TCGA-AR-A0TR TCGA-AR-A0TT 
       15.62        32.52        19.20        73.64         5.26        86.66 
TCGA-AR-A0TW TCGA-AR-A0TX TCGA-AR-A0TZ TCGA-AR-A0U0 TCGA-AR-A0U2 TCGA-AR-A1AH 
       98.93        64.83       107.24        65.36        83.87        75.55 
TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AO TCGA-AR-A1AP 
       61.84        52.77        51.25        48.82        43.56        39.98 
TCGA-AR-A1AQ TCGA-AR-A1AR TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A1AX 
       43.07        17.23        76.21        61.28        63.62        62.14 
TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24Q 
       94.22        96.89        78.51        84.20         2.76       104.28 
TCGA-AR-A24S TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24X TCGA-AR-A24Z TCGA-AR-A250 
       97.84        76.01        53.36        83.77        79.00        89.00 
TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LE TCGA-AR-A2LH 
       73.18        72.76        58.92        93.83       143.21        20.25 
TCGA-AR-A2LJ TCGA-AR-A2LL TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ 
       62.86        66.15        52.11        38.17        39.39        40.54 
TCGA-AR-A2LR TCGA-AR-A5QM TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I2 
       20.38        54.74        16.04        20.45        10.59       143.38 
TCGA-B6-A0I5 TCGA-B6-A0IA TCGA-B6-A0IB TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG 
      149.59       220.90       129.57        50.70        65.72       146.50 
TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IO 
      112.37       176.98        18.77       126.12        84.59       110.14 
TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RG TCGA-B6-A0RI TCGA-B6-A0RM TCGA-B6-A0RN 
      110.93       140.88        68.45       234.28        78.02       172.96 
TCGA-B6-A0RO TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RV TCGA-B6-A0WS 
      162.05       102.77       140.48        89.46       157.41        97.48 
TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WY TCGA-B6-A0WZ 
      188.68        79.63        18.35        21.47       113.79       129.57 
TCGA-B6-A0X0 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KF TCGA-B6-A2IU 
      129.70        28.27        68.94        58.88       101.52       170.17 
TCGA-B6-A401 TCGA-B6-A402 TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AU TCGA-BH-A0AY 
       85.35        74.99       103.63        71.15        24.53        25.55 
TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0B6 TCGA-BH-A0B7 
       28.50        46.95        39.16        48.36        56.94        56.98 
TCGA-BH-A0B9 TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BF TCGA-BH-A0BG TCGA-BH-A0BJ 
       51.68        32.02        18.21        25.71        24.85        21.70 
TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BP TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS 
       61.68        35.67        48.69        27.19        53.69        53.95 
TCGA-BH-A0BW TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0C3 TCGA-BH-A0DD 
       11.67        49.05        41.75        44.02        48.13        45.83 
TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DO 
       31.17        23.44        22.13        13.91        48.23        17.26 
TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX 
       15.65         3.22         2.56        38.47        67.86        47.41 
TCGA-BH-A0DZ TCGA-BH-A0E1 TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EA TCGA-BH-A0EI 
       16.27        15.68        44.81        46.19        32.58        24.43 
TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 
       30.35        10.78        15.16        37.78        35.51        24.56 
TCGA-BH-A0H7 TCGA-BH-A0HB TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HO TCGA-BH-A0HP 
       23.08        26.50        20.38         5.85         2.50        13.61 
TCGA-BH-A0HQ TCGA-BH-A0HY TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 
       36.85        50.79         5.59        23.93        24.95        42.35 
TCGA-BH-A0W7 TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18J TCGA-BH-A18L TCGA-BH-A18M 
       44.81         8.81         2.01        20.12        26.66        72.56 
TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18R TCGA-BH-A18S TCGA-BH-A18T TCGA-BH-A18U 
       37.74        30.28        37.55        66.05         7.36        51.39 
TCGA-BH-A1EO TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EW TCGA-BH-A1EX TCGA-BH-A1EY 
       91.99        82.85        42.28        55.69        49.58        17.69 
TCGA-BH-A1F0 TCGA-BH-A1F2 TCGA-BH-A1F5 TCGA-BH-A1F8 TCGA-BH-A1FB TCGA-BH-A1FD 
       25.81        31.53        89.16        24.66       120.62        33.17 
TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FR 
       74.73       122.89        36.92        63.35        55.00       144.59 
TCGA-BH-A1FU TCGA-BH-A201 TCGA-BH-A203 TCGA-BH-A204 TCGA-BH-A208 TCGA-BH-A209 
       72.07        28.14        38.60        83.31        57.83       130.16 
TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V 
       10.65         6.44        20.12        10.52       109.28         8.94 
TCGA-BH-A5J0 TCGA-BH-A6R8 TCGA-BH-A8FY TCGA-BH-A8FZ TCGA-BH-A8G0 TCGA-BH-AB28 
       23.51         9.63         9.70        18.87        21.76         9.44 
TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12Q TCGA-C8-A12U TCGA-C8-A12V 
       11.77        11.77        12.66        12.66        12.66        12.66 
TCGA-C8-A12Z TCGA-C8-A131 TCGA-C8-A132 TCGA-C8-A135 TCGA-C8-A1HE TCGA-C8-A1HI 
        0.39         2.24         1.87         1.05        12.33        11.28 
TCGA-C8-A1HL TCGA-C8-A1HN TCGA-C8-A26V TCGA-C8-A26X TCGA-C8-A26Y TCGA-C8-A273 
       10.42         3.25         0.30         0.36         0.43         9.67 
TCGA-C8-A274 TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A27B TCGA-C8-A3M8 TCGA-C8-A8HP 
        9.53         0.03         9.50         0.99         0.23        13.02 
TCGA-C8-A8HQ TCGA-C8-A8HR TCGA-C8-A9FZ TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A145 
       12.49        13.41        19.46        13.25        20.58        13.48 
TCGA-D8-A147 TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JC TCGA-D8-A1JD TCGA-D8-A1JE 
       19.20        14.17        17.49        15.78        18.15        18.90 
TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JH TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JM 
       12.03        12.03        14.01        20.09        20.12        19.40 
TCGA-D8-A1JN TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X7 
       20.38        12.20        13.32        14.70        18.58        16.73 
TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XC TCGA-D8-A1XD TCGA-D8-A1XF TCGA-D8-A1XG 
       25.74        23.90        12.39        17.16        15.22        14.73 
TCGA-D8-A1XK TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XS TCGA-D8-A1XT 
       14.50        19.92        17.69        15.55        16.31         6.35 
TCGA-D8-A1XU TCGA-D8-A1XW TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A1Y2 TCGA-D8-A27E 
       12.99        12.66        15.32        15.52        14.24        17.42 
TCGA-D8-A27F TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27L 
       16.04        13.45        13.05        14.43         9.44        16.41 
TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27V TCGA-D8-A3Z5 TCGA-D8-A3Z6 
       13.48         4.80         0.76        12.53        33.37        18.51 
TCGA-D8-A4Z1 TCGA-D8-A73U TCGA-D8-A73W TCGA-D8-A73X TCGA-E2-A105 TCGA-E2-A107 
       21.67        16.18         8.02        12.10        43.00        34.42 
TCGA-E2-A108 TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10C TCGA-E2-A10E TCGA-E2-A10F 
       27.52        40.41        37.51        40.11        28.44        28.87 
TCGA-E2-A14P TCGA-E2-A14Q TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V 
       40.96        38.24        33.17        33.30        43.33        34.26 
TCGA-E2-A14W TCGA-E2-A150 TCGA-E2-A153 TCGA-E2-A154 TCGA-E2-A155 TCGA-E2-A156 
       32.02        25.41        23.24        19.43        21.04        23.87 
TCGA-E2-A158 TCGA-E2-A15A TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15F TCGA-E2-A15G 
       14.79        23.34        22.82        17.29        21.63        18.21 
TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15O 
       17.42        19.40         9.04        20.58        11.05        13.02 
TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A15T TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 
       19.56        17.06        14.99        53.62        53.03        33.01 
TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BC TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IG 
       32.35        28.50        16.47        38.30        37.41        32.78 
TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IO TCGA-E2-A1IU TCGA-E2-A1L6 
       28.44        22.65         3.88        20.98        11.08        54.18 
TCGA-E2-A1L8 TCGA-E2-A1L9 TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LG 
       39.62        19.66        24.59        40.47        28.90        18.87 
TCGA-E2-A1LL TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A574 
       43.04         5.52        15.72         8.28        30.61        26.56 
TCGA-E2-A576 TCGA-E2-A9RU TCGA-E9-A1N3 TCGA-E9-A1N5 TCGA-E9-A1N8 TCGA-E9-A1NE 
       34.29        12.85        34.82        36.82        12.00        35.77 
TCGA-E9-A1NG TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R4 
       25.84        11.90        28.27        34.95         2.56         6.12 
TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RC TCGA-E9-A1RD TCGA-E9-A1RF 
        3.02         2.76        21.21        40.24         1.12         6.58 
TCGA-E9-A1RG TCGA-E9-A1RH TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A229 TCGA-E9-A22A 
       21.27        34.59        34.13        32.05        13.32        39.09 
TCGA-E9-A22B TCGA-E9-A22D TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A244 TCGA-E9-A247 
       22.75        41.03        20.71        17.06         0.69        27.22 
TCGA-E9-A248 TCGA-E9-A24A TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A2JT TCGA-E9-A3Q9 
        1.94        24.56         0.72        29.72         0.76        18.41 
TCGA-E9-A54X TCGA-E9-A5FK TCGA-E9-A5UO TCGA-E9-A6HE TCGA-EW-A1IW TCGA-EW-A1IX 
       12.33        14.70        13.81        15.39        12.20        39.72 
TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J5 TCGA-EW-A1OV 
        8.48        18.21        13.25        16.57        15.68        25.94 
TCGA-EW-A1OX TCGA-EW-A1OZ TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P3 TCGA-EW-A1P4 
       29.95        40.41        41.13        39.78        52.96        29.82 
TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1PA TCGA-EW-A1PB TCGA-EW-A1PD TCGA-EW-A1PG 
       18.48        30.08        18.90        19.99        13.94        34.55 
TCGA-EW-A2FS TCGA-EW-A3E8 TCGA-EW-A424 TCGA-GI-A2C8 TCGA-GM-A2D9 TCGA-GM-A2DA 
       52.73        34.03        23.51         7.40        59.57       216.76 
TCGA-GM-A2DB TCGA-GM-A2DC TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM 
       79.10        83.34        85.15        86.96       115.69       106.06 
TCGA-GM-A2DN TCGA-GM-A2DO TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XL 
      101.62        85.35       110.50        38.20        43.73        69.30 
TCGA-GM-A3XN TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2OB TCGA-JL-A3YW TCGA-LD-A66U 
       66.38        13.55        18.12        62.43        11.84        21.24 
TCGA-LD-A74U TCGA-LD-A7W5 TCGA-LD-A7W6 TCGA-LD-A9QF TCGA-LL-A440 TCGA-LL-A441 
       13.22         7.10        13.28        10.62        24.95        11.44 
TCGA-LL-A442 TCGA-LL-A50Y TCGA-LL-A5YL TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A5YO 
       10.95        25.05        17.06        15.32        14.70        14.47 
TCGA-LL-A5YP TCGA-LL-A6FP TCGA-LL-A6FQ TCGA-LL-A73Y TCGA-LL-A73Z TCGA-LL-A740 
       14.79        22.26         2.63        15.68         7.46        14.50 
TCGA-LL-A7SZ TCGA-LL-A9Q3 TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D6 
       14.70        14.07        27.91        22.39         2.10        36.30 
TCGA-OL-A5DA TCGA-OL-A5RU TCGA-OL-A5RV TCGA-OL-A5RW TCGA-OL-A5RX TCGA-OL-A5RY 
       58.62        40.08        34.92        36.36        28.87        24.72 
TCGA-OL-A66H TCGA-OL-A66J TCGA-OL-A66K TCGA-OL-A66L TCGA-OL-A66N TCGA-OL-A66O 
       26.70        65.62        41.92        42.77        26.04        17.36 
TCGA-OL-A66P TCGA-OL-A6VQ TCGA-OL-A6VR TCGA-OL-A97C TCGA-PE-A5DD TCGA-PE-A5DE 
       14.07        19.73        40.11         8.91        64.21        86.96 
TCGA-PL-A8LY TCGA-PL-A8LZ TCGA-S3-A6ZF TCGA-S3-A6ZG TCGA-S3-AA0Z TCGA-S3-AA10 
        0.26         9.93        16.50        13.12        16.80        15.39 
TCGA-S3-AA11 TCGA-S3-AA12 TCGA-S3-AA15 TCGA-S3-AA17 TCGA-UU-A93S TCGA-W8-A86G 
       13.84        15.35        13.84        13.94         3.81        11.41 
TCGA-WT-AB41 TCGA-WT-AB44 TCGA-XX-A899 TCGA-Z7-A8R5 TCGA-Z7-A8R6 
       52.96        29.03        15.35       108.07       107.05 

  DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE 
                         0.03                          0.03 
  DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE 
                       211.56                        234.28 
  DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE 
                        25.02                         24.43 
[1] "0.0 - 211.6 (25.0)" "0.0 - 234.3 (24.4)"
[1] "hr=" "1"  
D32V2, continuous
                               vv
clus                            STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  DEL PEAK  3(2Q37.3) MUTATED        21       19        0        1       108
  DEL PEAK  3(2Q37.3) WILD-TYPE      68       62        8        2       245
                               vv
clus                            STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  DEL PEAK  3(2Q37.3) MUTATED          73         1         44         13
  DEL PEAK  3(2Q37.3) WILD-TYPE       172         1        106         16
                               vv
clus                            STAGE IIIC STAGE IV STAGE TIS STAGE X
  DEL PEAK  3(2Q37.3) MUTATED           17        8         0       5
  DEL PEAK  3(2Q37.3) WILD-TYPE         46       12         1       8
D32V3, multiclass
            clus
vv           DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  STAGE I                             21                            68
  STAGE IA                            19                            62
  STAGE IB                             0                             8
  STAGE II                             1                             2
  STAGE IIA                          108                           245
  STAGE IIB                           73                           172
  STAGE III                            1                             1
  STAGE IIIA                          44                           106
  STAGE IIIB                          13                            16
  STAGE IIIC                          17                            46
  STAGE IV                             8                            12
  STAGE TIS                            0                             1
  STAGE X                              5                             8
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                             T1  T2  T3  T4
  DEL PEAK  3(2Q37.3) MUTATED    60 195  37  19
  DEL PEAK  3(2Q37.3) WILD-TYPE 212 421  93  21
D32V4, multiclass
    clus
vv   DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  T1                          60                           212
  T2                         195                           421
  T3                          37                            93
  T4                          19                            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                             N0  N1  N2  N3
  DEL PEAK  3(2Q37.3) MUTATED   152  95  41  19
  DEL PEAK  3(2Q37.3) WILD-TYPE 349 255  76  56
D32V5, multiclass
    clus
vv   DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  N0                         152                           349
  N1                          95                           255
  N2                          41                            76
  N3                          19                            56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D32V6, binary
                               cls
clus                              0   1
  DEL PEAK  3(2Q37.3) MUTATED   260   8
  DEL PEAK  3(2Q37.3) WILD-TYPE 619  13
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  3(2Q37.3) MUTATED    260    8
  DEL PEAK  3(2Q37.3) WILD-TYPE  619   13
   clus
vv  DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  0                         260                           619
  1                           8                            13
[1] 2 2
[1] FALSE
D32V7, binary
                               cls
clus                              0   1
  DEL PEAK  3(2Q37.3) MUTATED   310   3
  DEL PEAK  3(2Q37.3) WILD-TYPE 741   8
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  3(2Q37.3) MUTATED    310    3
  DEL PEAK  3(2Q37.3) WILD-TYPE  741    8
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  FEMALE                         310                           741
  MALE                             3                             8
[1] 2 2
[1] FALSE
                               vv
clus                            INFILTRATING CARCINOMA NOS
  DEL PEAK  3(2Q37.3) MUTATED                            0
  DEL PEAK  3(2Q37.3) WILD-TYPE                          1
                               vv
clus                            INFILTRATING DUCTAL CARCINOMA
  DEL PEAK  3(2Q37.3) MUTATED                             258
  DEL PEAK  3(2Q37.3) WILD-TYPE                           505
                               vv
clus                            INFILTRATING LOBULAR CARCINOMA
  DEL PEAK  3(2Q37.3) MUTATED                               25
  DEL PEAK  3(2Q37.3) WILD-TYPE                            167
                               vv
clus                            MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  DEL PEAK  3(2Q37.3) MUTATED                     3                     3
  DEL PEAK  3(2Q37.3) WILD-TYPE                   3                     1
                               vv
clus                            MIXED HISTOLOGY (PLEASE SPECIFY)
  DEL PEAK  3(2Q37.3) MUTATED                                  9
  DEL PEAK  3(2Q37.3) WILD-TYPE                               21
                               vv
clus                            MUCINOUS CARCINOMA OTHER  SPECIFY
  DEL PEAK  3(2Q37.3) MUTATED                    3             11
  DEL PEAK  3(2Q37.3) WILD-TYPE                 14             37
D32V8, multiclass
                                  clus
vv                                 DEL PEAK  3(2Q37.3) MUTATED
  INFILTRATING CARCINOMA NOS                                 0
  INFILTRATING DUCTAL CARCINOMA                            258
  INFILTRATING LOBULAR CARCINOMA                            25
  MEDULLARY CARCINOMA                                        3
  METAPLASTIC CARCINOMA                                      3
  MIXED HISTOLOGY (PLEASE SPECIFY)                           9
  MUCINOUS CARCINOMA                                         3
  OTHER  SPECIFY                                            11
                                  clus
vv                                 DEL PEAK  3(2Q37.3) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                   1
  INFILTRATING DUCTAL CARCINOMA                              505
  INFILTRATING LOBULAR CARCINOMA                             167
  MEDULLARY CARCINOMA                                          3
  METAPLASTIC CARCINOMA                                        1
  MIXED HISTOLOGY (PLEASE SPECIFY)                            21
  MUCINOUS CARCINOMA                                          14
  OTHER  SPECIFY                                              37
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D32V9, binary
                               cls
clus                              0   1
  DEL PEAK  3(2Q37.3) MUTATED    98 215
  DEL PEAK  3(2Q37.3) WILD-TYPE 190 559
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  3(2Q37.3) MUTATED     98  215
  DEL PEAK  3(2Q37.3) WILD-TYPE  190  559
     clus
vv    DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  NO                           98                           190
  YES                         215                           559
[1] 2 2
[1] FALSE
D32V10, continuous
                               vv
clus                            AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK  3(2Q37.3) MUTATED                                  0    25
  DEL PEAK  3(2Q37.3) WILD-TYPE                                1    35
                               vv
clus                            BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK  3(2Q37.3) MUTATED                          54   197
  DEL PEAK  3(2Q37.3) WILD-TYPE                       116   539
D32V11, multiclass
                                  clus
vv                                 DEL PEAK  3(2Q37.3) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                           0
  ASIAN                                                     25
  BLACK OR AFRICAN AMERICAN                                 54
  WHITE                                                    197
                                  clus
vv                                 DEL PEAK  3(2Q37.3) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                             1
  ASIAN                                                       35
  BLACK OR AFRICAN AMERICAN                                  116
  WHITE                                                      539
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D32V12, binary
                               cls
clus                              0   1
  DEL PEAK  3(2Q37.3) MUTATED    13 239
  DEL PEAK  3(2Q37.3) WILD-TYPE  25 619
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  3(2Q37.3) MUTATED     13  239
  DEL PEAK  3(2Q37.3) WILD-TYPE   25  619
                        clus
vv                       DEL PEAK  3(2Q37.3) MUTATED
  HISPANIC OR LATINO                              13
  NOT HISPANIC OR LATINO                         239
                        clus
vv                       DEL PEAK  3(2Q37.3) WILD-TYPE
  HISPANIC OR LATINO                                25
  NOT HISPANIC OR LATINO                           619
[1] 2 2
[1] FALSE

Clustering(33) Variable = DEL PEAK  4(3P21.31) MUTATION ANALYSIS
D33V1, survival
                                sevent
clus2                              0   1
  DEL PEAK  4(3P21.31) MUTATED   287  52
  DEL PEAK  4(3P21.31) WILD-TYPE 629  76
  DEL PEAK  4(3P21.31) MUTATED DEL PEAK  4(3P21.31) WILD-TYPE 
                           339                            705 
  DEL PEAK  4(3P21.31) MUTATED DEL PEAK  4(3P21.31) WILD-TYPE 
                            52                             76 
$`DEL PEAK  4(3P21.31) MUTATED`
TCGA-3C-AAAU TCGA-3C-AALI TCGA-5L-AAT0 TCGA-A1-A0SF TCGA-A1-A0SH TCGA-A1-A0SK 
      129.14       131.67        48.56        48.10        47.24        31.79 
TCGA-A1-A0SO TCGA-A2-A04P TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A0CL TCGA-A2-A0CM 
       28.01        18.02        73.84        87.25        99.12        24.79 
TCGA-A2-A0CT TCGA-A2-A0CW TCGA-A2-A0CX TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D4 
       75.25       107.93        56.81        67.33        34.55        25.22 
TCGA-A2-A0EO TCGA-A2-A0EQ TCGA-A2-A0SW TCGA-A2-A0SX TCGA-A2-A0T0 TCGA-A2-A0T3 
       80.28        79.76        44.88        50.43        17.52        49.84 
TCGA-A2-A0YL TCGA-A2-A0YT TCGA-A2-A1FZ TCGA-A2-A1G1 TCGA-A2-A25E TCGA-A2-A3XS 
       48.46        23.77        22.45        19.20       105.34        33.93 
TCGA-A2-A3XX TCGA-A2-A4RW TCGA-A2-A4S1 TCGA-A2-A4S3 TCGA-A7-A0CE TCGA-A7-A0CJ 
       47.31         7.30        26.96        21.90        35.31        30.61 
TCGA-A7-A0DA TCGA-A7-A13D TCGA-A7-A26F TCGA-A7-A26H TCGA-A7-A26I TCGA-A7-A2KD 
       35.67        31.73        24.26        23.80        21.73        22.32 
TCGA-A7-A4SA TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF TCGA-A7-A56D TCGA-A7-A5ZV 
       14.93        14.50        21.17        17.92        14.73        12.10 
TCGA-A7-A6VV TCGA-A7-A6VW TCGA-A7-A6VX TCGA-A7-A6VY TCGA-A8-A06Q TCGA-A8-A06U 
       10.29         9.37        10.42         8.75         1.02        29.03 
TCGA-A8-A06X TCGA-A8-A06Z TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07J TCGA-A8-A08B 
       31.00         1.02        18.97        18.97        12.00        38.01 
TCGA-A8-A08L TCGA-A8-A08O TCGA-A8-A08P TCGA-A8-A09A TCGA-A8-A09D TCGA-A8-A09I 
        9.99        31.00        31.00         9.99        50.04        45.07 
TCGA-A8-A09M TCGA-A8-A09V TCGA-A8-A09X TCGA-A8-A0A4 TCGA-AC-A23C TCGA-AC-A2BK 
       33.07        15.02        14.01        13.02         0.95        38.53 
TCGA-AC-A2FO TCGA-AC-A3OD TCGA-AC-A3W5 TCGA-AC-A5XS TCGA-AC-A6IX TCGA-AC-A7VB 
       50.70        14.83        16.57         1.55        12.26         8.22 
TCGA-AC-A8OQ TCGA-AN-A041 TCGA-AN-A049 TCGA-AN-A04C TCGA-AN-A04D TCGA-AN-A0AK 
        1.12         0.23         0.62         1.78         1.71         7.36 
TCGA-AN-A0AL TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0AT TCGA-AN-A0FJ TCGA-AN-A0FL 
        6.51         0.16         0.33         0.33         7.96         7.59 
TCGA-AN-A0FX TCGA-AN-A0FZ TCGA-AN-A0XN TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AO-A03L 
        0.33         0.33         0.33         0.33         0.33        80.28 
TCGA-AO-A03M TCGA-AO-A03T TCGA-AO-A0J3 TCGA-AO-A0J4 TCGA-AO-A0J5 TCGA-AO-A0J6 
       61.35        47.87        21.40        52.18        26.04        37.48 
TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JE TCGA-AO-A0JG TCGA-AO-A0JM TCGA-AO-A124 
       21.53        50.70        76.77        26.24        71.80       102.58 
TCGA-AO-A126 TCGA-AO-A129 TCGA-AO-A12G TCGA-AO-A1KQ TCGA-AO-A1KR TCGA-AO-A1KS 
      108.72       108.03        41.62        61.87        70.39         0.53 
TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A54N TCGA-AR-A0TP TCGA-AR-A0TS TCGA-AR-A0TT 
       26.93       130.09         2.56       111.32        74.79        86.66 
TCGA-AR-A0TX TCGA-AR-A0TY TCGA-AR-A0TZ TCGA-AR-A0U1 TCGA-AR-A0U2 TCGA-AR-A0U4 
       64.83        55.86       107.24       101.95        83.87        85.97 
TCGA-AR-A1AH TCGA-AR-A1AQ TCGA-AR-A24H TCGA-AR-A24L TCGA-AR-A24Q TCGA-AR-A24S 
       75.55        43.07       160.90        94.22       104.28        97.84 
TCGA-AR-A24T TCGA-AR-A24Z TCGA-AR-A251 TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LO 
       76.01        79.00        78.48        58.92        93.83        39.39 
TCGA-AR-A5QP TCGA-B6-A0I9 TCGA-B6-A0IB TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IH 
       20.45        12.13       129.57        65.72       146.50       112.37 
TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0IQ TCGA-B6-A0RO TCGA-B6-A0RS TCGA-B6-A0WS 
      176.98        18.77       140.88       162.05       100.70        97.48 
TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WY TCGA-B6-A1KI TCGA-BH-A0AU TCGA-BH-A0AZ 
       18.35        21.47       113.79        73.51        24.53        28.50 
TCGA-BH-A0B4 TCGA-BH-A0B6 TCGA-BH-A0B9 TCGA-BH-A0BC TCGA-BH-A0BF TCGA-BH-A0BG 
       39.16        56.94        51.68        32.02        25.71        24.85 
TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BR TCGA-BH-A0BW TCGA-BH-A0BZ TCGA-BH-A0C0 
       21.70        44.05        53.69        11.67        49.05        41.75 
TCGA-BH-A0C1 TCGA-BH-A0C7 TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DK 
       44.02        42.90        23.44        38.01        22.13        13.91 
TCGA-BH-A0DL TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E9 TCGA-BH-A0H7 TCGA-BH-A0HA 
       48.23        16.27         4.41        46.19        23.08        52.96 
TCGA-BH-A0HU TCGA-BH-A0HY TCGA-BH-A0RX TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18J 
       12.89        50.79         5.59         8.81         2.01        20.12 
TCGA-BH-A18L TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18R TCGA-BH-A18T TCGA-BH-A1EN 
       26.66        30.28        55.63        37.55         7.36        69.93 
TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1EY TCGA-BH-A1F8 TCGA-BH-A1FM TCGA-BH-A1FN 
       12.00        55.69        17.69        24.66        45.63        72.07 
TCGA-BH-A1FU TCGA-BH-A208 TCGA-BH-A42T TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-C8-A12L 
       72.07        57.83        10.52        18.64        23.51        11.93 
TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A130 TCGA-C8-A134 TCGA-C8-A135 TCGA-C8-A137 
       11.77        12.66         3.16         1.12         1.05         4.11 
TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HM TCGA-C8-A26V 
       10.92        11.34         0.16        12.03         2.30         0.30 
TCGA-C8-A26W TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A27B TCGA-C8-A3M8 TCGA-C8-A8HP 
        0.23         9.67         9.53         0.99         0.23        13.02 
TCGA-C8-A8HQ TCGA-D8-A13Z TCGA-D8-A145 TCGA-D8-A147 TCGA-D8-A1J8 TCGA-D8-A1J9 
       12.49        20.88        13.48        19.20        14.17        17.49 
TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JD TCGA-D8-A1JG TCGA-D8-A1JJ TCGA-D8-A1JK 
       18.71        15.78        18.15        12.03        20.09        20.12 
TCGA-D8-A1JM TCGA-D8-A1JP TCGA-D8-A1X5 TCGA-D8-A1XB TCGA-D8-A1XJ TCGA-D8-A1XK 
       19.40        21.01        18.58        18.15        21.83        14.50 
TCGA-D8-A1XL TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1XY TCGA-D8-A1XZ TCGA-D8-A1Y1 
       19.92         6.35        12.99        16.54        15.32         9.93 
TCGA-D8-A1Y3 TCGA-D8-A27F TCGA-D8-A27H TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27R 
       14.14        16.04        13.05        13.48         4.80        10.09 
TCGA-E2-A10C TCGA-E2-A14R TCGA-E2-A14V TCGA-E2-A14W TCGA-E2-A150 TCGA-E2-A152 
       40.11        38.60        34.26        32.02        25.41        27.12 
TCGA-E2-A155 TCGA-E2-A158 TCGA-E2-A159 TCGA-E2-A15A TCGA-E2-A1AZ TCGA-E2-A1IE 
       21.04        14.79        25.05        23.34        60.53        38.30 
TCGA-E2-A1II TCGA-E2-A1IO TCGA-E2-A1L7 TCGA-E2-A1LE TCGA-E2-A1LH TCGA-E2-A1LL 
       33.70        20.98        27.42        28.90       106.75        43.04 
TCGA-E2-A574 TCGA-E2-A576 TCGA-E2-A9RU TCGA-E9-A1N8 TCGA-E9-A1N9 TCGA-E9-A1NA 
       26.56        34.29        12.85        12.00        13.12        36.56 
TCGA-E9-A1NC TCGA-E9-A1NF TCGA-E9-A1R2 TCGA-E9-A1R4 TCGA-E9-A1R7 TCGA-E9-A1RG 
       39.55        35.24        34.95         6.12        21.21        21.27 
TCGA-E9-A226 TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A244 
       34.13        12.53        13.32        12.89        23.51         0.69 
TCGA-E9-A295 TCGA-E9-A2JS TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J6 TCGA-EW-A1OV 
        0.72        29.72        18.21        18.90        28.77        25.94 
TCGA-EW-A1OW TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A1P8 TCGA-EW-A1PC TCGA-EW-A1PD 
       22.82        29.82        23.11         7.86         6.15        13.94 
TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A3E8 TCGA-EW-A3U0 TCGA-EW-A423 TCGA-GI-A2C8 
       55.00        52.73        34.03        17.49        10.16         7.40 
TCGA-GI-A2C9 TCGA-GM-A2DB TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A3NW TCGA-GM-A3NY 
      109.87        79.10        70.85        72.10       110.50        38.20 
TCGA-GM-A3XL TCGA-HN-A2NL TCGA-JL-A3YX TCGA-LD-A7W5 TCGA-LL-A5YL TCGA-LL-A5YP 
       69.30         2.60        11.57         7.10        17.06        14.79 
TCGA-LL-A6FR TCGA-LL-A7T0 TCGA-LL-A8F5 TCGA-LL-A9Q3 TCGA-OK-A5Q2 TCGA-OL-A5RW 
       16.08        12.36        14.73        14.07         2.10        36.36 
TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66K TCGA-OL-A66N TCGA-OL-A6VO 
       24.72        22.32        20.38        41.92        26.04        28.21 
TCGA-PE-A5DC TCGA-S3-A6ZF TCGA-S3-A6ZG TCGA-S3-A6ZH TCGA-S3-AA10 TCGA-S3-AA11 
       47.01        16.50        13.12        16.93        15.39        13.84 
TCGA-S3-AA17 TCGA-XX-A89A TCGA-Z7-A8R5 
       13.94        16.04       108.07 

$`DEL PEAK  4(3P21.31) WILD-TYPE`
TCGA-3C-AALJ TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT1 TCGA-5T-A9QA TCGA-A1-A0SB 
       42.81        40.14        11.44        48.36         9.96         8.52 
TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SG TCGA-A1-A0SI TCGA-A1-A0SJ TCGA-A1-A0SM 
       14.37        43.43        14.27        20.88        13.68         7.96 
TCGA-A1-A0SN TCGA-A1-A0SP TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04Q TCGA-A2-A04R 
       39.32        19.20        18.21       104.81        78.41       121.94 
TCGA-A2-A04V TCGA-A2-A04W TCGA-A2-A04X TCGA-A2-A04Y TCGA-A2-A0CK TCGA-A2-A0CO 
       63.12       101.98        55.43        36.13       136.73       114.81 
TCGA-A2-A0CP TCGA-A2-A0CQ TCGA-A2-A0CR TCGA-A2-A0CS TCGA-A2-A0CU TCGA-A2-A0CV 
       92.48        88.60       107.93        75.55         5.19        98.99 
TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EP TCGA-A2-A0ER 
       33.76        61.58       101.72       134.40       107.61        74.40 
TCGA-A2-A0ES TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX 
       72.00        35.05        34.29        31.82        61.94        24.72 
TCGA-A2-A0EY TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SY TCGA-A2-A0T1 
       63.29        99.19        54.64        27.12        44.28        17.13 
TCGA-A2-A0T2 TCGA-A2-A0T4 TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC 
        8.38        20.52        17.46        18.90        20.75        32.55 
TCGA-A2-A0YD TCGA-A2-A0YE TCGA-A2-A0YF TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A0YI 
       25.28        18.21        50.47        21.90        21.67        49.48 
TCGA-A2-A0YJ TCGA-A2-A0YK TCGA-A2-A0YM TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1FX 
       18.61        19.33        31.73        23.47        17.36        60.72 
TCGA-A2-A1G0 TCGA-A2-A1G4 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25A TCGA-A2-A25B 
       20.25        19.56        16.47        52.47       107.70        42.44 
TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD TCGA-A2-A3XT 
       17.19        18.15        10.59        20.88        39.65        83.01 
TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A3Y0 
       29.98        32.75        49.48        34.98        50.37        38.37 
TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S2 TCGA-A7-A0CD TCGA-A7-A0CG 
       24.39        21.30        23.21        21.14        38.30        34.29 
TCGA-A7-A0CH TCGA-A7-A0D9 TCGA-A7-A0DB TCGA-A7-A0DC TCGA-A7-A13E TCGA-A7-A13F 
       35.47        37.45        33.11        29.79        20.19        25.15 
TCGA-A7-A13G TCGA-A7-A13H TCGA-A7-A26E TCGA-A7-A26G TCGA-A7-A26J TCGA-A7-A3IY 
       23.61        29.56        31.36        23.74        20.61        11.34 
TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3J1 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A426 
       10.59        10.29        11.28        13.41        14.70        11.97 
TCGA-A7-A4SB TCGA-A7-A5ZW TCGA-A7-A5ZX TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06R 
       13.74        10.72        11.05        13.02        13.02        17.98 
TCGA-A8-A06T TCGA-A8-A06Y TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A079 TCGA-A8-A07B 
       53.06        26.01        17.03        53.98         9.01        43.00 
TCGA-A8-A07E TCGA-A8-A07I TCGA-A8-A07L TCGA-A8-A07O TCGA-A8-A07P TCGA-A8-A07R 
       19.99        14.01        32.05         9.99        10.98         8.98 
TCGA-A8-A07S TCGA-A8-A07U TCGA-A8-A07W TCGA-A8-A07Z TCGA-A8-A082 TCGA-A8-A084 
        7.99        24.99         9.99        45.07        18.05        15.06 
TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08C TCGA-A8-A08F TCGA-A8-A08G 
       36.95        13.02         0.99        28.96        33.01        19.96 
TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08R TCGA-A8-A08S TCGA-A8-A08T TCGA-A8-A08X 
       12.00        37.05         0.99        33.01       112.08        43.00 
TCGA-A8-A08Z TCGA-A8-A091 TCGA-A8-A092 TCGA-A8-A093 TCGA-A8-A095 TCGA-A8-A097 
       40.01        33.01        30.97        17.95        41.98        12.00 
TCGA-A8-A099 TCGA-A8-A09B TCGA-A8-A09C TCGA-A8-A09E TCGA-A8-A09K TCGA-A8-A09N 
        9.99        12.00         1.02        49.05        29.98         1.02 
TCGA-A8-A09Q TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09W TCGA-A8-A0A1 TCGA-A8-A0A2 
       25.02         8.98        19.04         0.99        12.00        19.04 
TCGA-A8-A0A6 TCGA-A8-A0A7 TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23E 
       21.04         0.99        27.02        17.03        38.04         2.37 
TCGA-AC-A23G TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FF 
       10.85         5.72         1.48        99.35        40.57        55.43 
TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2QH TCGA-AC-A2QI TCGA-AC-A2QJ 
       36.99        38.79        26.04        33.04         0.92         2.27 
TCGA-AC-A3BB TCGA-AC-A3HN TCGA-AC-A3QP TCGA-AC-A3TN TCGA-AC-A3W6 TCGA-AC-A3YI 
       32.45        16.31        22.19        14.99        19.79        23.24 
TCGA-AC-A3YJ TCGA-AC-A62V TCGA-AC-A62X TCGA-AC-A62Y TCGA-AC-A6IV TCGA-AC-A6IW 
       24.79        11.44        13.71        17.42        18.67        13.58 
TCGA-AC-A6NO TCGA-AC-A7VC TCGA-AC-A8OP TCGA-AC-A8OR TCGA-AC-A8OS TCGA-AN-A03X 
        1.68         0.03        20.19         1.32         2.30         0.33 
TCGA-AN-A03Y TCGA-AN-A046 TCGA-AN-A04A TCGA-AN-A0AJ TCGA-AN-A0AS TCGA-AN-A0FD 
        0.33         0.33         2.96         9.96         0.33         6.44 
TCGA-AN-A0FF TCGA-AN-A0FK TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FV 
        5.65         7.00         7.17         6.28         7.04         0.33 
TCGA-AN-A0FW TCGA-AN-A0FY TCGA-AN-A0XL TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XR 
        0.36         0.33         0.33        12.33         0.30         0.33 
TCGA-AN-A0XS TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03P 
        0.33         5.33         5.59        66.77        81.63        95.70 
TCGA-AO-A03R TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J2 TCGA-AO-A0J7 TCGA-AO-A0J8 
       68.75        58.95        29.13        32.78        20.32        22.36 
TCGA-AO-A0J9 TCGA-AO-A0JC TCGA-AO-A0JD TCGA-AO-A0JF TCGA-AO-A0JI TCGA-AO-A0JJ 
       53.03        50.86        72.00        21.37        50.24        62.04 
TCGA-AO-A0JL TCGA-AO-A125 TCGA-AO-A128 TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12D 
       55.33        99.25       106.78        90.58        98.27        64.04 
TCGA-AO-A12E TCGA-AO-A12F TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KT 
       57.30        48.36        28.37        14.73        82.62        17.79 
TCGA-AQ-A04H TCGA-AQ-A0Y5 TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AQ-A54O TCGA-AQ-A7U7 
       24.79         5.65        15.62        32.52        32.91        19.20 
TCGA-AR-A0TQ TCGA-AR-A0TR TCGA-AR-A0TV TCGA-AR-A0TW TCGA-AR-A0U0 TCGA-AR-A0U3 
       73.64         5.26        42.35        98.93        65.36       114.02 
TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AM TCGA-AR-A1AN 
       61.84        52.77        51.25        48.82        76.11        43.73 
TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AR TCGA-AR-A1AS TCGA-AR-A1AU TCGA-AR-A1AV 
       43.56        39.98        17.23        37.81        76.21        61.28 
TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24K TCGA-AR-A24M TCGA-AR-A24N 
       63.62        62.14        33.73        50.89        96.89        78.51 
TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24R TCGA-AR-A24U TCGA-AR-A24V TCGA-AR-A24W 
       84.20         2.76        87.22        53.36        85.35        50.96 
TCGA-AR-A24X TCGA-AR-A250 TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A2LE TCGA-AR-A2LH 
       83.77        89.00        73.18        72.76       143.21        20.25 
TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LL TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LQ 
       62.86        54.21        66.15        52.11        38.17        40.54 
TCGA-AR-A2LR TCGA-AR-A5QM TCGA-AR-A5QN TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I2 
       20.38        54.74        16.04        10.59        77.62       143.38 
TCGA-B6-A0I5 TCGA-B6-A0IA TCGA-B6-A0IC TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IO 
      149.59       220.90        50.70       126.12        84.59       110.14 
TCGA-B6-A0IP TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RL 
      110.93       211.56        68.45       189.01       234.28        81.17 
TCGA-B6-A0RM TCGA-B6-A0RN TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RU 
       78.02       172.96       102.77       140.48        89.46       131.21 
TCGA-B6-A0RV TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 
      157.41       188.68        79.63       129.57       129.70       186.48 
TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A1KN 
       28.27        68.94        58.88        43.59       101.52       139.17 
TCGA-B6-A2IU TCGA-B6-A401 TCGA-B6-A402 TCGA-B6-A408 TCGA-B6-A40B TCGA-B6-A40C 
      170.17        85.35        74.99        68.12       103.63        71.15 
TCGA-BH-A0AV TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0B0 TCGA-BH-A0B2 TCGA-BH-A0B3 
       59.84        20.45        25.55        46.95        40.83        39.55 
TCGA-BH-A0B5 TCGA-BH-A0B7 TCGA-BH-A0BA TCGA-BH-A0BD TCGA-BH-A0BM TCGA-BH-A0BO 
       48.36        56.98        37.22        18.21        61.68        35.67 
TCGA-BH-A0BP TCGA-BH-A0BQ TCGA-BH-A0BS TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0C3 
       48.69        27.19        53.95        45.57        49.94        48.13 
TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DO TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0DS 
       45.83        31.17        17.26        15.65         3.22         2.56 
TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E6 
       38.47        67.86        47.41        15.68        14.30         9.63 
TCGA-BH-A0E7 TCGA-BH-A0EA TCGA-BH-A0EB TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0GY 
       44.81        32.58        24.49        31.00        24.43        30.35 
TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H9 
       10.78        15.16        37.78        35.51        24.56        41.00 
TCGA-BH-A0HB TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ 
       26.50        20.38         5.85         2.50        13.61        36.85 
TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 
       51.32        27.25        23.93        24.95        42.35        44.81 
TCGA-BH-A0WA TCGA-BH-A18I TCGA-BH-A18K TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18S 
       23.05         7.23        90.84        72.56        37.74        66.05 
TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1EO TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EU 
       51.39        51.16        91.99       113.82        82.85        42.28 
TCGA-BH-A1EX TCGA-BH-A1F0 TCGA-BH-A1F2 TCGA-BH-A1F5 TCGA-BH-A1F6 TCGA-BH-A1FB 
       49.58        25.81        31.53        89.16        97.48       120.62 
TCGA-BH-A1FC TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ 
      114.15        33.17        74.73       122.89        36.92        63.35 
TCGA-BH-A1FL TCGA-BH-A1FR TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A203 TCGA-BH-A204 
       55.00       144.59        28.14        26.14        38.60        83.31 
TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42U TCGA-BH-A42V 
      130.16        10.65         6.44        20.12       109.28         8.94 
TCGA-BH-A6R8 TCGA-BH-A6R9 TCGA-BH-A8FY TCGA-BH-A8FZ TCGA-BH-A8G0 TCGA-BH-AB28 
        9.63         5.26         9.70        18.87        21.76         9.44 
TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12U TCGA-C8-A12V TCGA-C8-A12W 
       11.77        11.77        12.66        12.66        12.66        12.66 
TCGA-C8-A12X TCGA-C8-A12Z TCGA-C8-A131 TCGA-C8-A132 TCGA-C8-A138 TCGA-C8-A1HE 
       12.66         0.39         2.24         1.87         4.08        12.33 
TCGA-C8-A1HI TCGA-C8-A1HL TCGA-C8-A1HN TCGA-C8-A26X TCGA-C8-A26Y TCGA-C8-A26Z 
       11.28        10.42         3.25         0.36         0.43         8.28 
TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A3M7 TCGA-C8-A8HR TCGA-C8-A9FZ 
        0.03         9.50        12.20         0.03        13.41        19.46 
TCGA-D8-A13Y TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A146 
       11.90        13.25        20.58        13.97        14.17        21.14 
TCGA-D8-A1JA TCGA-D8-A1JE TCGA-D8-A1JF TCGA-D8-A1JH TCGA-D8-A1JI TCGA-D8-A1JL 
       16.50        18.90        12.03        14.01        18.97        20.09 
TCGA-D8-A1JN TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X6 TCGA-D8-A1X7 
       20.38        12.20        13.32        14.70        17.79        16.73 
TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XC TCGA-D8-A1XD TCGA-D8-A1XF 
       25.74        23.90        27.58        12.39        17.16        15.22 
TCGA-D8-A1XG TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XQ TCGA-D8-A1XR TCGA-D8-A1XS 
       14.73        17.69        15.55        16.41        15.85        16.31 
TCGA-D8-A1XV TCGA-D8-A1XW TCGA-D8-A1Y0 TCGA-D8-A1Y2 TCGA-D8-A27E TCGA-D8-A27G 
       15.16        12.66        15.52        14.24        17.42        13.45 
TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27P TCGA-D8-A27T TCGA-D8-A27V 
       14.43         9.44        16.41         0.76        13.08        12.53 
TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-D8-A73U TCGA-D8-A73W 
       12.26        33.37        18.51        21.67        16.18         8.02 
TCGA-D8-A73X TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10A 
       12.10        43.00        34.42        27.52        46.59        40.41 
TCGA-E2-A10B TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P 
       37.51        28.44        28.87        47.15        44.68        40.96 
TCGA-E2-A14Q TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14X TCGA-E2-A14Y 
       38.24        33.17        33.30        43.33        31.96        28.60 
TCGA-E2-A14Z TCGA-E2-A153 TCGA-E2-A154 TCGA-E2-A156 TCGA-E2-A15C TCGA-E2-A15D 
       18.51        23.24        19.43        23.87        22.82        17.29 
TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15I TCGA-E2-A15J 
       20.71        21.63        18.21        12.92        17.42        19.40 
TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15O TCGA-E2-A15P TCGA-E2-A15R 
        9.04        20.58        11.05        13.02        19.56        17.06 
TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 
       14.07        14.99        53.62        53.03        33.01        32.35 
TCGA-E2-A1B6 TCGA-E2-A1BC TCGA-E2-A1BD TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1IH 
       28.50        16.47        17.10        37.41        32.78        33.73 
TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IU TCGA-E2-A1L6 
       28.44        22.65         3.88        22.19        11.08        54.18 
TCGA-E2-A1L8 TCGA-E2-A1L9 TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LG TCGA-E2-A1LI 
       39.62        19.66        24.59        40.47        18.87       102.61 
TCGA-E2-A1LK TCGA-E2-A2P5 TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 
        8.75        16.93         5.52        15.72         8.28        30.61 
TCGA-E2-A573 TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N6 TCGA-E9-A1ND 
       34.92        34.82        32.88        36.82        13.48        12.59 
TCGA-E9-A1NE TCGA-E9-A1NG TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R3 
       35.77        25.84         9.86        11.90        28.27         2.56 
TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RD 
        3.02         2.76        32.09        32.09        40.24         1.12 
TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RH TCGA-E9-A1RI TCGA-E9-A227 TCGA-E9-A22A 
       34.65         6.58        34.59        35.64        32.05        39.09 
TCGA-E9-A22B TCGA-E9-A22D TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A247 TCGA-E9-A248 
       22.75        41.03        20.71        17.06        27.22         1.94 
TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3QA 
        7.13        24.56         0.76        26.07        18.41        30.18 
TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UO 
       15.72        12.33        23.84        14.70         0.79        13.81 
TCGA-E9-A5UP TCGA-E9-A6HE TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1J2 
       14.40        15.39        12.20        39.72         8.48        13.25 
TCGA-EW-A1J3 TCGA-EW-A1J5 TCGA-EW-A1OX TCGA-EW-A1OY TCGA-EW-A1OZ TCGA-EW-A1P0 
       16.57        15.68        29.95        29.85        40.41        41.13 
TCGA-EW-A1P1 TCGA-EW-A1P3 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1PA TCGA-EW-A1PB 
       39.78        52.96        18.48        30.08        18.90        19.99 
TCGA-EW-A1PE TCGA-EW-A1PF TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FV TCGA-EW-A2FW 
       10.52        14.43        34.55        19.96        25.91        22.09 
TCGA-EW-A424 TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DC TCGA-GM-A2DD TCGA-GM-A2DI 
       23.51        59.57       216.76        83.34        75.02        85.15 
TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A2DO TCGA-GM-A3XG 
       86.96       115.69       106.06       101.62        85.35        43.73 
TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2OB TCGA-JL-A3YW 
       66.38        72.03        13.55        18.12        62.43        11.84 
TCGA-LD-A66U TCGA-LD-A74U TCGA-LD-A7W6 TCGA-LD-A9QF TCGA-LL-A440 TCGA-LL-A441 
       21.24        13.22        13.28        10.62        24.95        11.44 
TCGA-LL-A442 TCGA-LL-A50Y TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LL-A6FP 
       10.95        25.05        15.32        14.70        14.47        22.26 
TCGA-LL-A6FQ TCGA-LL-A73Y TCGA-LL-A73Z TCGA-LL-A740 TCGA-LL-A7SZ TCGA-LQ-A4E4 
        2.63        15.68         7.46        14.50        14.70        27.91 
TCGA-MS-A51U TCGA-OL-A5D6 TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RU 
       22.39        36.30        58.52        31.99        58.62        40.08 
TCGA-OL-A5RV TCGA-OL-A5RX TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66L 
       34.92        28.87        26.70        23.47        65.62        42.77 
TCGA-OL-A66O TCGA-OL-A66P TCGA-OL-A6VQ TCGA-OL-A6VR TCGA-OL-A97C TCGA-PE-A5DD 
       17.36        14.07        19.73        40.11         8.91        64.21 
TCGA-PE-A5DE TCGA-PL-A8LX TCGA-PL-A8LY TCGA-PL-A8LZ TCGA-S3-AA0Z TCGA-S3-AA12 
       86.96         0.16         0.26         9.93        16.80        15.35 
TCGA-S3-AA14 TCGA-S3-AA15 TCGA-UL-AAZ6 TCGA-UU-A93S TCGA-W8-A86G TCGA-WT-AB41 
       14.96        13.84        17.03         3.81        11.41        52.96 
TCGA-WT-AB44 TCGA-XX-A899 TCGA-Z7-A8R6 
       29.03        15.35       107.05 

  DEL PEAK  4(3P21.31) MUTATED DEL PEAK  4(3P21.31) WILD-TYPE 
                          0.16                           0.03 
  DEL PEAK  4(3P21.31) MUTATED DEL PEAK  4(3P21.31) WILD-TYPE 
                        176.98                         234.28 
  DEL PEAK  4(3P21.31) MUTATED DEL PEAK  4(3P21.31) WILD-TYPE 
                         23.34                          24.95 
[1] "0.2 - 177.0 (23.3)" "0.0 - 234.3 (24.9)"
[1] "hr=" "1.5"
D33V2, continuous
                                vv
clus                             STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  DEL PEAK  4(3P21.31) MUTATED        18       19        1        1       125
  DEL PEAK  4(3P21.31) WILD-TYPE      71       62        7        2       228
                                vv
clus                             STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  DEL PEAK  4(3P21.31) MUTATED          86         0         51          8
  DEL PEAK  4(3P21.31) WILD-TYPE       159         2         99         21
                                vv
clus                             STAGE IIIC STAGE IV STAGE TIS STAGE X
  DEL PEAK  4(3P21.31) MUTATED           21        7         1       4
  DEL PEAK  4(3P21.31) WILD-TYPE         42       13         0       9
D33V3, multiclass
            clus
vv           DEL PEAK  4(3P21.31) MUTATED DEL PEAK  4(3P21.31) WILD-TYPE
  STAGE I                              18                             71
  STAGE IA                             19                             62
  STAGE IB                              1                              7
  STAGE II                              1                              2
  STAGE IIA                           125                            228
  STAGE IIB                            86                            159
  STAGE III                             0                              2
  STAGE IIIA                           51                             99
  STAGE IIIB                            8                             21
  STAGE IIIC                           21                             42
  STAGE IV                              7                             13
  STAGE TIS                             1                              0
  STAGE X                               4                              9
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              T1  T2  T3  T4
  DEL PEAK  4(3P21.31) MUTATED    57 236  39  10
  DEL PEAK  4(3P21.31) WILD-TYPE 215 380  91  30
D33V4, multiclass
    clus
vv   DEL PEAK  4(3P21.31) MUTATED DEL PEAK  4(3P21.31) WILD-TYPE
  T1                           57                            215
  T2                          236                            380
  T3                           39                             91
  T4                           10                             30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              N0  N1  N2  N3
  DEL PEAK  4(3P21.31) MUTATED   161 111  44  23
  DEL PEAK  4(3P21.31) WILD-TYPE 340 239  73  52
D33V5, multiclass
    clus
vv   DEL PEAK  4(3P21.31) MUTATED DEL PEAK  4(3P21.31) WILD-TYPE
  N0                          161                            340
  N1                          111                            239
  N2                           44                             73
  N3                           23                             52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D33V6, binary
                                cls
clus                               0   1
  DEL PEAK  4(3P21.31) MUTATED   282   8
  DEL PEAK  4(3P21.31) WILD-TYPE 597  13
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  4(3P21.31) MUTATED    282    8
  DEL PEAK  4(3P21.31) WILD-TYPE  597   13
   clus
vv  DEL PEAK  4(3P21.31) MUTATED DEL PEAK  4(3P21.31) WILD-TYPE
  0                          282                            597
  1                            8                             13
[1] 2 2
[1] FALSE
D33V7, binary
                                cls
clus                               0   1
  DEL PEAK  4(3P21.31) MUTATED   340   4
  DEL PEAK  4(3P21.31) WILD-TYPE 711   7
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  4(3P21.31) MUTATED    340    4
  DEL PEAK  4(3P21.31) WILD-TYPE  711    7
        clus
vv       DEL PEAK  4(3P21.31) MUTATED DEL PEAK  4(3P21.31) WILD-TYPE
  FEMALE                          340                            711
  MALE                              4                              7
[1] 2 2
[1] FALSE
                                vv
clus                             INFILTRATING CARCINOMA NOS
  DEL PEAK  4(3P21.31) MUTATED                            1
  DEL PEAK  4(3P21.31) WILD-TYPE                          0
                                vv
clus                             INFILTRATING DUCTAL CARCINOMA
  DEL PEAK  4(3P21.31) MUTATED                             282
  DEL PEAK  4(3P21.31) WILD-TYPE                           481
                                vv
clus                             INFILTRATING LOBULAR CARCINOMA
  DEL PEAK  4(3P21.31) MUTATED                               40
  DEL PEAK  4(3P21.31) WILD-TYPE                            152
                                vv
clus                             MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  DEL PEAK  4(3P21.31) MUTATED                     1                     1
  DEL PEAK  4(3P21.31) WILD-TYPE                   5                     3
                                vv
clus                             MIXED HISTOLOGY (PLEASE SPECIFY)
  DEL PEAK  4(3P21.31) MUTATED                                  6
  DEL PEAK  4(3P21.31) WILD-TYPE                               24
                                vv
clus                             MUCINOUS CARCINOMA OTHER  SPECIFY
  DEL PEAK  4(3P21.31) MUTATED                    1             12
  DEL PEAK  4(3P21.31) WILD-TYPE                 16             36
D33V8, multiclass
                                  clus
vv                                 DEL PEAK  4(3P21.31) MUTATED
  INFILTRATING CARCINOMA NOS                                  1
  INFILTRATING DUCTAL CARCINOMA                             282
  INFILTRATING LOBULAR CARCINOMA                             40
  MEDULLARY CARCINOMA                                         1
  METAPLASTIC CARCINOMA                                       1
  MIXED HISTOLOGY (PLEASE SPECIFY)                            6
  MUCINOUS CARCINOMA                                          1
  OTHER  SPECIFY                                             12
                                  clus
vv                                 DEL PEAK  4(3P21.31) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                    0
  INFILTRATING DUCTAL CARCINOMA                               481
  INFILTRATING LOBULAR CARCINOMA                              152
  MEDULLARY CARCINOMA                                           5
  METAPLASTIC CARCINOMA                                         3
  MIXED HISTOLOGY (PLEASE SPECIFY)                             24
  MUCINOUS CARCINOMA                                           16
  OTHER  SPECIFY                                               36
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D33V9, binary
                                cls
clus                               0   1
  DEL PEAK  4(3P21.31) MUTATED   100 244
  DEL PEAK  4(3P21.31) WILD-TYPE 188 530
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  4(3P21.31) MUTATED    100  244
  DEL PEAK  4(3P21.31) WILD-TYPE  188  530
     clus
vv    DEL PEAK  4(3P21.31) MUTATED DEL PEAK  4(3P21.31) WILD-TYPE
  NO                           100                            188
  YES                          244                            530
[1] 2 2
[1] FALSE
D33V10, continuous
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK  4(3P21.31) MUTATED                                  0    26
  DEL PEAK  4(3P21.31) WILD-TYPE                                1    34
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK  4(3P21.31) MUTATED                          69   224
  DEL PEAK  4(3P21.31) WILD-TYPE                       101   512
D33V11, multiclass
                                  clus
vv                                 DEL PEAK  4(3P21.31) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            0
  ASIAN                                                      26
  BLACK OR AFRICAN AMERICAN                                  69
  WHITE                                                     224
                                  clus
vv                                 DEL PEAK  4(3P21.31) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              1
  ASIAN                                                        34
  BLACK OR AFRICAN AMERICAN                                   101
  WHITE                                                       512
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D33V12, binary
                                cls
clus                               0   1
  DEL PEAK  4(3P21.31) MUTATED    11 283
  DEL PEAK  4(3P21.31) WILD-TYPE  27 575
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  4(3P21.31) MUTATED     11  283
  DEL PEAK  4(3P21.31) WILD-TYPE   27  575
                        clus
vv                       DEL PEAK  4(3P21.31) MUTATED
  HISPANIC OR LATINO                               11
  NOT HISPANIC OR LATINO                          283
                        clus
vv                       DEL PEAK  4(3P21.31) WILD-TYPE
  HISPANIC OR LATINO                                 27
  NOT HISPANIC OR LATINO                            575
[1] 2 2
[1] FALSE

Clustering(34) Variable = DEL PEAK  5(4P16.3) MUTATION ANALYSIS
D34V1, survival
                               sevent
clus2                             0   1
  DEL PEAK  5(4P16.3) MUTATED   286  42
  DEL PEAK  5(4P16.3) WILD-TYPE 630  86
  DEL PEAK  5(4P16.3) MUTATED DEL PEAK  5(4P16.3) WILD-TYPE 
                          328                           716 
  DEL PEAK  5(4P16.3) MUTATED DEL PEAK  5(4P16.3) WILD-TYPE 
                           42                            86 
$`DEL PEAK  5(4P16.3) MUTATED`
TCGA-3C-AAAU TCGA-3C-AALI TCGA-3C-AALJ TCGA-A1-A0SI TCGA-A1-A0SK TCGA-A1-A0SN 
      129.14       131.67        42.81        20.88        31.79        39.32 
TCGA-A1-A0SO TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CS 
       28.01        73.84        87.25        99.12        24.79        75.55 
TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0D0 TCGA-A2-A0EQ TCGA-A2-A0SV TCGA-A2-A0T1 
       98.99       107.93        67.33        79.76        27.12        17.13 
TCGA-A2-A0T3 TCGA-A2-A0T7 TCGA-A2-A0YE TCGA-A2-A0YH TCGA-A2-A0YJ TCGA-A2-A1FW 
       49.84        20.75        18.21        21.67        18.61        17.36 
TCGA-A2-A1G1 TCGA-A2-A25C TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3Y0 TCGA-A2-A4RW 
       19.20        17.19        33.93        83.01        38.37         7.30 
TCGA-A2-A4RX TCGA-A2-A4S3 TCGA-A7-A0CD TCGA-A7-A0CE TCGA-A7-A0CJ TCGA-A7-A13D 
       24.39        21.90        38.30        35.31        30.61        31.73 
TCGA-A7-A13E TCGA-A7-A13F TCGA-A7-A26G TCGA-A7-A2KD TCGA-A7-A4SD TCGA-A7-A56D 
       20.19        25.15        23.74        22.32        14.50        14.73 
TCGA-A7-A5ZV TCGA-A7-A6VV TCGA-A7-A6VW TCGA-A7-A6VX TCGA-A8-A06T TCGA-A8-A06X 
       12.10        10.29         9.37        10.42        53.06        31.00 
TCGA-A8-A06Y TCGA-A8-A07B TCGA-A8-A07O TCGA-A8-A07R TCGA-A8-A084 TCGA-A8-A085 
       26.01        43.00         9.99         8.98        15.06        36.95 
TCGA-A8-A08B TCGA-A8-A08F TCGA-A8-A08I TCGA-A8-A08L TCGA-A8-A08X TCGA-A8-A092 
       38.01        33.01        12.00         9.99        43.00        30.97 
TCGA-A8-A09C TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09M TCGA-A8-A09X TCGA-AC-A23C 
        1.02        49.05        45.07        33.07        14.01         0.95 
TCGA-AC-A23E TCGA-AC-A2BK TCGA-AC-A2QI TCGA-AC-A3BB TCGA-AC-A5XS TCGA-AC-A62V 
        2.37        38.53         0.92        32.45         1.55        11.44 
TCGA-AC-A62Y TCGA-AC-A6IW TCGA-AC-A7VC TCGA-AC-A8OP TCGA-AN-A041 TCGA-AN-A046 
       17.42        13.58         0.03        20.19         0.23         0.33 
TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A04D TCGA-AN-A0AK TCGA-AN-A0AM TCGA-AN-A0AR 
        2.96         1.78         1.71         7.36         0.16         0.33 
TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FT 
        0.33         0.33         6.44         7.96         7.00         7.04 
TCGA-AN-A0FV TCGA-AN-A0FX TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XS 
        0.33         0.33         0.33        12.33         0.30         0.33 
TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AO-A03N TCGA-AO-A0J3 TCGA-AO-A0J4 TCGA-AO-A0J6 
        0.33         0.33        66.77        21.40        52.18        37.48 
TCGA-AO-A0J7 TCGA-AO-A0JB TCGA-AO-A0JM TCGA-AO-A124 TCGA-AO-A129 TCGA-AO-A12A 
       20.32        50.70        71.80       102.58       108.03        90.58 
TCGA-AO-A12D TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A1KS TCGA-AO-A1KT TCGA-AQ-A04J 
       64.04        48.36        41.62         0.53        17.79        26.93 
TCGA-AQ-A04L TCGA-AQ-A0Y5 TCGA-AR-A0TP TCGA-AR-A0TR TCGA-AR-A0TS TCGA-AR-A0TY 
      130.09         5.65       111.32         5.26        74.79        55.86 
TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A0U3 TCGA-AR-A0U4 TCGA-AR-A1AH TCGA-AR-A1AI 
       65.36       101.95       114.02        85.97        75.55        61.84 
TCGA-AR-A1AM TCGA-AR-A1AN TCGA-AR-A1AQ TCGA-AR-A1AR TCGA-AR-A24K TCGA-AR-A24O 
       76.11        43.73        43.07        17.23        50.89        84.20 
TCGA-AR-A24Q TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A251 TCGA-AR-A255 TCGA-AR-A256 
      104.28        85.35        50.96        78.48        58.92        93.83 
TCGA-AR-A2LO TCGA-AR-A5QN TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0IB TCGA-B6-A0IG 
       39.39        16.04        10.59        77.62       129.57       146.50 
TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IO TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RH 
      112.37       176.98       110.14       140.88       211.56       189.01 
TCGA-B6-A0RL TCGA-B6-A0RS TCGA-B6-A0RU TCGA-B6-A0WV TCGA-B6-A0WX TCGA-B6-A0WY 
       81.17       100.70       131.21        79.63        21.47       113.79 
TCGA-B6-A0X1 TCGA-B6-A1KC TCGA-B6-A1KI TCGA-B6-A401 TCGA-B6-A402 TCGA-B6-A408 
      186.48        43.59        73.51        85.35        74.99        68.12 
TCGA-BH-A0AW TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B5 
       20.45        28.50        46.95        39.55        39.16        48.36 
TCGA-BH-A0BA TCGA-BH-A0BF TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BR TCGA-BH-A0BT 
       37.22        25.71        21.70        44.05        53.69        45.57 
TCGA-BH-A0BV TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0C7 TCGA-BH-A0DI TCGA-BH-A0DX 
       49.94        41.75        44.02        42.90        22.13        47.41 
TCGA-BH-A0E0 TCGA-BH-A0E6 TCGA-BH-A0E9 TCGA-BH-A0EB TCGA-BH-A0HI TCGA-BH-A0HU 
        4.41         9.63        46.19        24.49        20.38        12.89 
TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A18F TCGA-BH-A18Q TCGA-BH-A18T TCGA-BH-A18U 
        5.59        23.93         8.81        55.63         7.36        51.39 
TCGA-BH-A18V TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1F0 TCGA-BH-A1F6 TCGA-BH-A1F8 
       51.16        42.28        12.00        25.81        97.48        24.66 
TCGA-BH-A1FU TCGA-BH-A203 TCGA-BH-A209 TCGA-BH-A5IZ TCGA-C8-A12P TCGA-C8-A12Z 
       72.07        38.60       130.16        18.64        11.77         0.39 
TCGA-C8-A135 TCGA-C8-A138 TCGA-C8-A1HF TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HL 
        1.05         4.08        10.92         0.16        12.03        10.42 
TCGA-C8-A1HM TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A27B TCGA-D8-A13Y TCGA-D8-A13Z 
        2.30         0.03         9.50         0.99        11.90        20.88 
TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A147 TCGA-D8-A1JA TCGA-D8-A1JE TCGA-D8-A1JF 
       13.97        14.17        19.20        16.50        18.90        12.03 
TCGA-D8-A1JG TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JM TCGA-D8-A1X9 TCGA-D8-A1XA 
       12.03        20.09        20.12        19.40        23.90        27.58 
TCGA-D8-A1XF TCGA-D8-A1XG TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XO TCGA-D8-A1XR 
       15.22        14.73        21.83        14.50        15.55        15.85 
TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1XW TCGA-D8-A1XY TCGA-D8-A1Y2 TCGA-D8-A1Y3 
        6.35        12.99        12.66        16.54        14.24        14.14 
TCGA-D8-A27F TCGA-D8-A27T TCGA-D8-A73U TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P 
       16.04        13.08        16.18        47.15        44.68        40.96 
TCGA-E2-A14R TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A154 TCGA-E2-A159 TCGA-E2-A15E 
       38.60        18.51        25.41        19.43        25.05        20.71 
TCGA-E2-A15H TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1BD TCGA-E2-A1IH TCGA-E2-A1II 
       12.92        60.53        53.62        17.10        33.73        33.70 
TCGA-E2-A1L8 TCGA-E2-A1LG TCGA-E2-A1LH TCGA-E2-A573 TCGA-E9-A1N4 TCGA-E9-A1N6 
       39.62        18.87       106.75        34.92        32.88        13.48 
TCGA-E9-A1N8 TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NI TCGA-E9-A1R3 TCGA-E9-A1RA 
       12.00        39.55        12.59         9.86         2.56        32.09 
TCGA-E9-A1RB TCGA-E9-A228 TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A243 TCGA-E9-A244 
       32.09        12.53        12.89        23.51        17.06         0.69 
TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A3HO TCGA-E9-A3X8 TCGA-E9-A54Y TCGA-E9-A5FK 
        1.94         7.13        26.07        15.72        23.84        14.70 
TCGA-E9-A5FL TCGA-EW-A1IX TCGA-EW-A1J1 TCGA-EW-A1OV TCGA-EW-A1OW TCGA-EW-A1OY 
        0.79        39.72        18.90        25.94        22.82        29.85 
TCGA-EW-A1OZ TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A1P8 TCGA-EW-A1PC TCGA-EW-A1PE 
       40.41        29.82        23.11         7.86         6.15        10.52 
TCGA-EW-A2FR TCGA-EW-A3U0 TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2DB TCGA-GM-A2DF 
       55.00        17.49         7.40       109.87        79.10        70.85 
TCGA-GM-A2DH TCGA-GM-A2DI TCGA-GM-A2DL TCGA-GM-A3XL TCGA-JL-A3YW TCGA-JL-A3YX 
       72.10        85.15       115.69        69.30        11.84        11.57 
TCGA-LL-A441 TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A5YP TCGA-LL-A6FR TCGA-LL-A73Z 
       11.44        15.32        14.70        14.79        16.08         7.46 
TCGA-LL-A8F5 TCGA-OL-A5D7 TCGA-OL-A5S0 TCGA-OL-A66I TCGA-OL-A66K TCGA-OL-A6VO 
       14.73        58.52        20.38        23.47        41.92        28.21 
TCGA-PE-A5DC TCGA-PE-A5DE TCGA-PL-A8LX TCGA-PL-A8LZ TCGA-S3-A6ZF TCGA-S3-A6ZH 
       47.01        86.96         0.16         9.93        16.50        16.93 
TCGA-S3-AA10 TCGA-S3-AA17 TCGA-WT-AB41 TCGA-WT-AB44 
       15.39        13.94        52.96        29.03 

$`DEL PEAK  5(4P16.3) WILD-TYPE`
TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT0 TCGA-5L-AAT1 TCGA-5T-A9QA TCGA-A1-A0SB 
       40.14        11.44        48.56        48.36         9.96         8.52 
TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SJ 
       14.37        43.43        48.10        14.27        47.24        13.68 
TCGA-A1-A0SM TCGA-A1-A0SP TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04P TCGA-A2-A04Q 
        7.96        19.20        18.21       104.81        18.02        78.41 
TCGA-A2-A04R TCGA-A2-A04V TCGA-A2-A04W TCGA-A2-A04X TCGA-A2-A04Y TCGA-A2-A0CK 
      121.94        63.12       101.98        55.43        36.13       136.73 
TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CQ TCGA-A2-A0CR TCGA-A2-A0CT TCGA-A2-A0CU 
      114.81        92.48        88.60       107.93        75.25         5.19 
TCGA-A2-A0CX TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0D4 TCGA-A2-A0EM 
       56.81        34.55        33.76        61.58        25.22       101.72 
TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0ER TCGA-A2-A0ES TCGA-A2-A0ET 
      134.40        80.28       107.61        74.40        72.00        35.05 
TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0EY TCGA-A2-A0ST 
       34.29        31.82        61.94        24.72        63.29        99.19 
TCGA-A2-A0SU TCGA-A2-A0SW TCGA-A2-A0SX TCGA-A2-A0SY TCGA-A2-A0T0 TCGA-A2-A0T2 
       54.64        44.88        50.43        44.28        17.52         8.38 
TCGA-A2-A0T4 TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YF 
       20.52        17.46        18.90        32.55        25.28        50.47 
TCGA-A2-A0YG TCGA-A2-A0YI TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A0YM TCGA-A2-A0YT 
       21.90        49.48        19.33        48.46        31.73        23.77 
TCGA-A2-A1FV TCGA-A2-A1FX TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G4 TCGA-A2-A1G6 
       23.47        60.72        22.45        20.25        19.56        16.47 
TCGA-A2-A259 TCGA-A2-A25A TCGA-A2-A25B TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F 
       52.47       107.70        42.44        18.15       105.34        10.59 
TCGA-A2-A3KC TCGA-A2-A3KD TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX 
       20.88        39.65        29.98        32.75        49.48        47.31 
TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S2 
       34.98        50.37        21.30        23.21        26.96        21.14 
TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A0DC 
       34.29        35.47        37.45        35.67        33.11        29.79 
TCGA-A7-A13G TCGA-A7-A13H TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26H TCGA-A7-A26I 
       23.61        29.56        31.36        24.26        23.80        21.73 
TCGA-A7-A26J TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3J1 TCGA-A7-A3RF 
       20.61        11.34        10.59        10.29        11.28        13.41 
TCGA-A7-A425 TCGA-A7-A426 TCGA-A7-A4SA TCGA-A7-A4SB TCGA-A7-A4SE TCGA-A7-A4SF 
       14.70        11.97        14.93        13.74        21.17        17.92 
TCGA-A7-A5ZW TCGA-A7-A5ZX TCGA-A7-A6VY TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06Q 
       10.72        11.05         8.75        13.02        13.02         1.02 
TCGA-A8-A06R TCGA-A8-A06U TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A079 
       17.98        29.03         1.02        17.03        53.98         9.01 
TCGA-A8-A07E TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07L 
       19.99        18.97        18.97        14.01        12.00        32.05 
TCGA-A8-A07P TCGA-A8-A07S TCGA-A8-A07U TCGA-A8-A07W TCGA-A8-A07Z TCGA-A8-A082 
       10.98         7.99        24.99         9.99        45.07        18.05 
TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08C TCGA-A8-A08G TCGA-A8-A08J TCGA-A8-A08O 
       13.02         0.99        28.96        19.96        37.05        31.00 
TCGA-A8-A08P TCGA-A8-A08R TCGA-A8-A08S TCGA-A8-A08T TCGA-A8-A08Z TCGA-A8-A091 
       31.00         0.99        33.01       112.08        40.01        33.01 
TCGA-A8-A093 TCGA-A8-A095 TCGA-A8-A097 TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09B 
       17.95        41.98        12.00         9.99         9.99        12.00 
TCGA-A8-A09D TCGA-A8-A09K TCGA-A8-A09N TCGA-A8-A09Q TCGA-A8-A09R TCGA-A8-A09T 
       50.04        29.98         1.02        25.02         8.98        19.04 
TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A6 
       15.02         0.99        12.00        19.04        13.02        21.04 
TCGA-A8-A0A7 TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23G TCGA-AC-A23H 
        0.99        27.02        17.03        38.04        10.85         5.72 
TCGA-AC-A2B8 TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK 
        1.48        99.35        40.57        55.43        36.99        38.79 
TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A2QH TCGA-AC-A2QJ TCGA-AC-A3HN TCGA-AC-A3OD 
       26.04        50.70        33.04         2.27        16.31        14.83 
TCGA-AC-A3QP TCGA-AC-A3TN TCGA-AC-A3W5 TCGA-AC-A3W6 TCGA-AC-A3YI TCGA-AC-A3YJ 
       22.19        14.99        16.57        19.79        23.24        24.79 
TCGA-AC-A62X TCGA-AC-A6IV TCGA-AC-A6IX TCGA-AC-A6NO TCGA-AC-A7VB TCGA-AC-A8OQ 
       13.71        18.67        12.26         1.68         8.22         1.12 
TCGA-AC-A8OR TCGA-AC-A8OS TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A049 TCGA-AN-A0AJ 
        1.32         2.30         0.33         0.33         0.62         9.96 
TCGA-AN-A0AL TCGA-AN-A0FF TCGA-AN-A0FL TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FW 
        6.51         5.65         7.59         7.17         6.28         0.36 
TCGA-AN-A0FY TCGA-AN-A0FZ TCGA-AN-A0XL TCGA-AN-A0XR TCGA-AN-A0XV TCGA-AN-A0XW 
        0.33         0.33         0.33         0.33         5.33         5.59 
TCGA-AO-A03L TCGA-AO-A03M TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A03T 
       80.28        61.35        81.63        95.70        68.75        47.87 
TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J2 TCGA-AO-A0J5 TCGA-AO-A0J8 TCGA-AO-A0J9 
       58.95        29.13        32.78        26.04        22.36        53.03 
TCGA-AO-A0JA TCGA-AO-A0JC TCGA-AO-A0JD TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JG 
       21.53        50.86        72.00        76.77        21.37        26.24 
TCGA-AO-A0JI TCGA-AO-A0JJ TCGA-AO-A0JL TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 
       50.24        62.04        55.33        99.25       108.72       106.78 
TCGA-AO-A12B TCGA-AO-A12E TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KQ 
       98.27        57.30        28.37        14.73        82.62        61.87 
TCGA-AO-A1KR TCGA-AQ-A04H TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AQ-A54N TCGA-AQ-A54O 
       70.39        24.79        15.62        32.52         2.56        32.91 
TCGA-AQ-A7U7 TCGA-AR-A0TQ TCGA-AR-A0TT TCGA-AR-A0TV TCGA-AR-A0TW TCGA-AR-A0TX 
       19.20        73.64        86.66        42.35        98.93        64.83 
TCGA-AR-A0TZ TCGA-AR-A0U2 TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AO 
      107.24        83.87        52.77        51.25        48.82        43.56 
TCGA-AR-A1AP TCGA-AR-A1AS TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A1AX 
       39.98        37.81        76.21        61.28        63.62        62.14 
TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24P 
       33.73       160.90        94.22        96.89        78.51         2.76 
TCGA-AR-A24R TCGA-AR-A24S TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24X TCGA-AR-A24Z 
       87.22        97.84        76.01        53.36        83.77        79.00 
TCGA-AR-A250 TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ 
       89.00        73.18        72.76       143.21        20.25        62.86 
TCGA-AR-A2LK TCGA-AR-A2LL TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LQ TCGA-AR-A2LR 
       54.21        66.15        52.11        38.17        40.54        20.38 
TCGA-AR-A5QM TCGA-AR-A5QP TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0I9 TCGA-B6-A0IA 
       54.74        20.45       143.38       149.59        12.13       220.90 
TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IP 
       50.70        65.72        18.77       126.12        84.59       110.93 
TCGA-B6-A0RG TCGA-B6-A0RI TCGA-B6-A0RM TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RP 
       68.45       234.28        78.02       172.96       162.05       102.77 
TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WW 
      140.48        89.46       157.41        97.48       188.68        18.35 
TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KF 
      129.57       129.70        28.27        68.94        58.88       101.52 
TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AU TCGA-BH-A0AV 
      139.17       170.17       103.63        71.15        24.53        59.84 
TCGA-BH-A0AY TCGA-BH-A0B2 TCGA-BH-A0B6 TCGA-BH-A0B7 TCGA-BH-A0B9 TCGA-BH-A0BC 
       25.55        40.83        56.94        56.98        51.68        32.02 
TCGA-BH-A0BD TCGA-BH-A0BG TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BP TCGA-BH-A0BQ 
       18.21        24.85        61.68        35.67        48.69        27.19 
TCGA-BH-A0BS TCGA-BH-A0BW TCGA-BH-A0BZ TCGA-BH-A0C3 TCGA-BH-A0DD TCGA-BH-A0DE 
       53.95        11.67        49.05        48.13        45.83        31.17 
TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DO TCGA-BH-A0DP 
       23.44        38.01        13.91        48.23        17.26        15.65 
TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DZ TCGA-BH-A0E1 
        3.22         2.56        38.47        67.86        16.27        15.68 
TCGA-BH-A0E2 TCGA-BH-A0E7 TCGA-BH-A0EA TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0GY 
       14.30        44.81        32.58        31.00        24.43        30.35 
TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H7 
       10.78        15.16        37.78        35.51        24.56        23.08 
TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HK TCGA-BH-A0HO TCGA-BH-A0HP 
       41.00        52.96        26.50         5.85         2.50        13.61 
TCGA-BH-A0HQ TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0W4 TCGA-BH-A0W5 
       36.85        51.32        27.25        50.79        24.95        42.35 
TCGA-BH-A0W7 TCGA-BH-A0WA TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18K 
       44.81        23.05         2.01         7.23        20.12        90.84 
TCGA-BH-A18L TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18R TCGA-BH-A18S 
       26.66        72.56        37.74        30.28        37.55        66.05 
TCGA-BH-A1EN TCGA-BH-A1EO TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EW TCGA-BH-A1EX 
       69.93        91.99       113.82        82.85        55.69        49.58 
TCGA-BH-A1EY TCGA-BH-A1F2 TCGA-BH-A1F5 TCGA-BH-A1FB TCGA-BH-A1FC TCGA-BH-A1FD 
       17.69        31.53        89.16       120.62       114.15        33.17 
TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FM 
       74.73       122.89        36.92        63.35        55.00        45.63 
TCGA-BH-A1FN TCGA-BH-A1FR TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A204 TCGA-BH-A208 
       72.07       144.59        28.14        26.14        83.31        57.83 
TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V 
       10.65         6.44        20.12        10.52       109.28         8.94 
TCGA-BH-A5J0 TCGA-BH-A6R8 TCGA-BH-A6R9 TCGA-BH-A8FY TCGA-BH-A8FZ TCGA-BH-A8G0 
       23.51         9.63         5.26         9.70        18.87        21.76 
TCGA-BH-AB28 TCGA-C8-A12L TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12Q 
        9.44        11.93        11.77        11.77        12.66        12.66 
TCGA-C8-A12U TCGA-C8-A12V TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A130 TCGA-C8-A131 
       12.66        12.66        12.66        12.66         3.16         2.24 
TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A137 TCGA-C8-A1HE TCGA-C8-A1HG TCGA-C8-A1HI 
        1.87         1.12         4.11        12.33        11.34        11.28 
TCGA-C8-A1HN TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A26X TCGA-C8-A26Y TCGA-C8-A26Z 
        3.25         0.30         0.23         0.36         0.43         8.28 
TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A27A TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-C8-A8HP 
        9.67         9.53        12.20         0.03         0.23        13.02 
TCGA-C8-A8HQ TCGA-C8-A8HR TCGA-C8-A9FZ TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A145 
       12.49        13.41        19.46        13.25        20.58        13.48 
TCGA-D8-A146 TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JD 
       21.14        14.17        17.49        18.71        15.78        18.15 
TCGA-D8-A1JH TCGA-D8-A1JI TCGA-D8-A1JL TCGA-D8-A1JN TCGA-D8-A1JP TCGA-D8-A1JS 
       14.01        18.97        20.09        20.38        21.01        12.20 
TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X7 TCGA-D8-A1X8 
       13.32        14.70        18.58        17.79        16.73        25.74 
TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XD TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XQ 
       18.15        12.39        17.16        19.92        17.69        16.41 
TCGA-D8-A1XS TCGA-D8-A1XV TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A27E 
       16.31        15.16        15.32        15.52         9.93        17.42 
TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27M 
       13.45        13.05        14.43         9.44        16.41        13.48 
TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27R TCGA-D8-A27V TCGA-D8-A27W TCGA-D8-A3Z5 
        4.80         0.76        10.09        12.53        12.26        33.37 
TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-D8-A73W TCGA-D8-A73X TCGA-E2-A105 TCGA-E2-A107 
       18.51        21.67         8.02        12.10        43.00        34.42 
TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10C TCGA-E2-A10E 
       27.52        46.59        40.41        37.51        40.11        28.44 
TCGA-E2-A10F TCGA-E2-A14Q TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V 
       28.87        38.24        33.17        33.30        43.33        34.26 
TCGA-E2-A14W TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A152 TCGA-E2-A153 TCGA-E2-A155 
       32.02        31.96        28.60        27.12        23.24        21.04 
TCGA-E2-A156 TCGA-E2-A158 TCGA-E2-A15A TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15F 
       23.87        14.79        23.34        22.82        17.29        21.63 
TCGA-E2-A15G TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M 
       18.21        17.42        19.40         9.04        20.58        11.05 
TCGA-E2-A15O TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1B1 
       13.02        19.56        17.06        14.07        14.99        53.03 
TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BC TCGA-E2-A1IE TCGA-E2-A1IF 
       33.01        32.35        28.50        16.47        38.30        37.41 
TCGA-E2-A1IG TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IO 
       32.78        28.44        22.65         3.88        22.19        20.98 
TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L9 TCGA-E2-A1LA TCGA-E2-A1LB 
       11.08        54.18        27.42        19.66        24.59        40.47 
TCGA-E2-A1LE TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A1LL TCGA-E2-A2P5 TCGA-E2-A2P6 
       28.90       102.61         8.75        43.04        16.93         5.52 
TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A574 TCGA-E2-A576 TCGA-E2-A9RU 
       15.72         8.28        30.61        26.56        34.29        12.85 
TCGA-E9-A1N3 TCGA-E9-A1N5 TCGA-E9-A1N9 TCGA-E9-A1NA TCGA-E9-A1NE TCGA-E9-A1NF 
       34.82        36.82        13.12        36.56        35.77        35.24 
TCGA-E9-A1NG TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R4 TCGA-E9-A1R5 
       25.84        11.90        28.27        34.95         6.12         3.02 
TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RC TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RF 
        2.76        21.21        40.24         1.12        34.65         6.58 
TCGA-E9-A1RG TCGA-E9-A1RH TCGA-E9-A1RI TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A229 
       21.27        34.59        35.64        34.13        32.05        13.32 
TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A22D TCGA-E9-A22H TCGA-E9-A247 TCGA-E9-A24A 
       39.09        22.75        41.03        20.71        27.22        24.56 
TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A2JT TCGA-E9-A3Q9 TCGA-E9-A3QA TCGA-E9-A54X 
        0.72        29.72         0.76        18.41        30.18        12.33 
TCGA-E9-A5UO TCGA-E9-A5UP TCGA-E9-A6HE TCGA-EW-A1IW TCGA-EW-A1IY TCGA-EW-A1IZ 
       13.81        14.40        15.39        12.20         8.48        18.21 
TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J5 TCGA-EW-A1J6 TCGA-EW-A1OX TCGA-EW-A1P0 
       13.25        16.57        15.68        28.77        29.95        41.13 
TCGA-EW-A1P1 TCGA-EW-A1P3 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1PA TCGA-EW-A1PB 
       39.78        52.96        18.48        30.08        18.90        19.99 
TCGA-EW-A1PD TCGA-EW-A1PF TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FS TCGA-EW-A2FV 
       13.94        14.43        34.55        19.96        52.73        25.91 
TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A423 TCGA-EW-A424 TCGA-GM-A2D9 TCGA-GM-A2DA 
       22.09        34.03        10.16        23.51        59.57       216.76 
TCGA-GM-A2DC TCGA-GM-A2DD TCGA-GM-A2DK TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A2DO 
       83.34        75.02        86.96       106.06       101.62        85.35 
TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV 
      110.50        38.20        43.73        66.38        72.03        13.55 
TCGA-GM-A5PX TCGA-HN-A2NL TCGA-HN-A2OB TCGA-LD-A66U TCGA-LD-A74U TCGA-LD-A7W5 
       18.12         2.60        62.43        21.24        13.22         7.10 
TCGA-LD-A7W6 TCGA-LD-A9QF TCGA-LL-A440 TCGA-LL-A442 TCGA-LL-A50Y TCGA-LL-A5YL 
       13.28        10.62        24.95        10.95        25.05        17.06 
TCGA-LL-A5YO TCGA-LL-A6FP TCGA-LL-A6FQ TCGA-LL-A73Y TCGA-LL-A740 TCGA-LL-A7SZ 
       14.47        22.26         2.63        15.68        14.50        14.70 
TCGA-LL-A7T0 TCGA-LL-A9Q3 TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D6 
       12.36        14.07        27.91        22.39         2.10        36.30 
TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RU TCGA-OL-A5RV TCGA-OL-A5RW TCGA-OL-A5RX 
       31.99        58.62        40.08        34.92        36.36        28.87 
TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A66H TCGA-OL-A66J TCGA-OL-A66L TCGA-OL-A66N 
       24.72        22.32        26.70        65.62        42.77        26.04 
TCGA-OL-A66O TCGA-OL-A66P TCGA-OL-A6VQ TCGA-OL-A6VR TCGA-OL-A97C TCGA-PE-A5DD 
       17.36        14.07        19.73        40.11         8.91        64.21 
TCGA-PL-A8LY TCGA-S3-A6ZG TCGA-S3-AA0Z TCGA-S3-AA11 TCGA-S3-AA12 TCGA-S3-AA14 
        0.26        13.12        16.80        13.84        15.35        14.96 
TCGA-S3-AA15 TCGA-UL-AAZ6 TCGA-UU-A93S TCGA-W8-A86G TCGA-XX-A899 TCGA-XX-A89A 
       13.84        17.03         3.81        11.41        15.35        16.04 
TCGA-Z7-A8R5 TCGA-Z7-A8R6 
      108.07       107.05 

  DEL PEAK  5(4P16.3) MUTATED DEL PEAK  5(4P16.3) WILD-TYPE 
                         0.03                          0.03 
  DEL PEAK  5(4P16.3) MUTATED DEL PEAK  5(4P16.3) WILD-TYPE 
                       211.56                        234.28 
  DEL PEAK  5(4P16.3) MUTATED DEL PEAK  5(4P16.3) WILD-TYPE 
                       23.625                        24.790 
[1] "0.0 - 211.6 (23.6)" "0.0 - 234.3 (24.8)"
[1] "hr=" "1"  
D34V2, continuous
                               vv
clus                            STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  DEL PEAK  5(4P16.3) MUTATED        18       16        1        0       123
  DEL PEAK  5(4P16.3) WILD-TYPE      71       65        7        3       230
                               vv
clus                            STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  DEL PEAK  5(4P16.3) MUTATED          83         0         50          8
  DEL PEAK  5(4P16.3) WILD-TYPE       162         2        100         21
                               vv
clus                            STAGE IIIC STAGE IV STAGE TIS STAGE X
  DEL PEAK  5(4P16.3) MUTATED           19        8         0       3
  DEL PEAK  5(4P16.3) WILD-TYPE         44       12         1      10
D34V3, multiclass
            clus
vv           DEL PEAK  5(4P16.3) MUTATED DEL PEAK  5(4P16.3) WILD-TYPE
  STAGE I                             18                            71
  STAGE IA                            16                            65
  STAGE IB                             1                             7
  STAGE II                             0                             3
  STAGE IIA                          123                           230
  STAGE IIB                           83                           162
  STAGE III                            0                             2
  STAGE IIIA                          50                           100
  STAGE IIIB                           8                            21
  STAGE IIIC                          19                            44
  STAGE IV                             8                            12
  STAGE TIS                            0                             1
  STAGE X                              3                            10
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                             T1  T2  T3  T4
  DEL PEAK  5(4P16.3) MUTATED    58 222  38  13
  DEL PEAK  5(4P16.3) WILD-TYPE 214 394  92  27
D34V4, multiclass
    clus
vv   DEL PEAK  5(4P16.3) MUTATED DEL PEAK  5(4P16.3) WILD-TYPE
  T1                          58                           214
  T2                         222                           394
  T3                          38                            92
  T4                          13                            27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                             N0  N1  N2  N3
  DEL PEAK  5(4P16.3) MUTATED   152 115  41  21
  DEL PEAK  5(4P16.3) WILD-TYPE 349 235  76  54
D34V5, multiclass
    clus
vv   DEL PEAK  5(4P16.3) MUTATED DEL PEAK  5(4P16.3) WILD-TYPE
  N0                         152                           349
  N1                         115                           235
  N2                          41                            76
  N3                          21                            54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D34V6, binary
                               cls
clus                              0   1
  DEL PEAK  5(4P16.3) MUTATED   280   8
  DEL PEAK  5(4P16.3) WILD-TYPE 599  13
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  5(4P16.3) MUTATED    280    8
  DEL PEAK  5(4P16.3) WILD-TYPE  599   13
   clus
vv  DEL PEAK  5(4P16.3) MUTATED DEL PEAK  5(4P16.3) WILD-TYPE
  0                         280                           599
  1                           8                            13
[1] 2 2
[1] FALSE
D34V7, binary
                               cls
clus                              0   1
  DEL PEAK  5(4P16.3) MUTATED   330   3
  DEL PEAK  5(4P16.3) WILD-TYPE 721   8
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  5(4P16.3) MUTATED    330    3
  DEL PEAK  5(4P16.3) WILD-TYPE  721    8
        clus
vv       DEL PEAK  5(4P16.3) MUTATED DEL PEAK  5(4P16.3) WILD-TYPE
  FEMALE                         330                           721
  MALE                             3                             8
[1] 2 2
[1] FALSE
                               vv
clus                            INFILTRATING CARCINOMA NOS
  DEL PEAK  5(4P16.3) MUTATED                            1
  DEL PEAK  5(4P16.3) WILD-TYPE                          0
                               vv
clus                            INFILTRATING DUCTAL CARCINOMA
  DEL PEAK  5(4P16.3) MUTATED                             276
  DEL PEAK  5(4P16.3) WILD-TYPE                           487
                               vv
clus                            INFILTRATING LOBULAR CARCINOMA
  DEL PEAK  5(4P16.3) MUTATED                               31
  DEL PEAK  5(4P16.3) WILD-TYPE                            161
                               vv
clus                            MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  DEL PEAK  5(4P16.3) MUTATED                     4                     2
  DEL PEAK  5(4P16.3) WILD-TYPE                   2                     2
                               vv
clus                            MIXED HISTOLOGY (PLEASE SPECIFY)
  DEL PEAK  5(4P16.3) MUTATED                                  6
  DEL PEAK  5(4P16.3) WILD-TYPE                               24
                               vv
clus                            MUCINOUS CARCINOMA OTHER  SPECIFY
  DEL PEAK  5(4P16.3) MUTATED                    0             13
  DEL PEAK  5(4P16.3) WILD-TYPE                 17             35
D34V8, multiclass
                                  clus
vv                                 DEL PEAK  5(4P16.3) MUTATED
  INFILTRATING CARCINOMA NOS                                 1
  INFILTRATING DUCTAL CARCINOMA                            276
  INFILTRATING LOBULAR CARCINOMA                            31
  MEDULLARY CARCINOMA                                        4
  METAPLASTIC CARCINOMA                                      2
  MIXED HISTOLOGY (PLEASE SPECIFY)                           6
  MUCINOUS CARCINOMA                                         0
  OTHER  SPECIFY                                            13
                                  clus
vv                                 DEL PEAK  5(4P16.3) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                   0
  INFILTRATING DUCTAL CARCINOMA                              487
  INFILTRATING LOBULAR CARCINOMA                             161
  MEDULLARY CARCINOMA                                          2
  METAPLASTIC CARCINOMA                                        2
  MIXED HISTOLOGY (PLEASE SPECIFY)                            24
  MUCINOUS CARCINOMA                                          17
  OTHER  SPECIFY                                              35
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D34V9, binary
                               cls
clus                              0   1
  DEL PEAK  5(4P16.3) MUTATED    99 234
  DEL PEAK  5(4P16.3) WILD-TYPE 189 540
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  5(4P16.3) MUTATED     99  234
  DEL PEAK  5(4P16.3) WILD-TYPE  189  540
     clus
vv    DEL PEAK  5(4P16.3) MUTATED DEL PEAK  5(4P16.3) WILD-TYPE
  NO                           99                           189
  YES                         234                           540
[1] 2 2
[1] FALSE
D34V10, continuous
                               vv
clus                            AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK  5(4P16.3) MUTATED                                  1    17
  DEL PEAK  5(4P16.3) WILD-TYPE                                0    43
                               vv
clus                            BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK  5(4P16.3) MUTATED                          68   224
  DEL PEAK  5(4P16.3) WILD-TYPE                       102   512
D34V11, multiclass
                                  clus
vv                                 DEL PEAK  5(4P16.3) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                           1
  ASIAN                                                     17
  BLACK OR AFRICAN AMERICAN                                 68
  WHITE                                                    224
                                  clus
vv                                 DEL PEAK  5(4P16.3) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                             0
  ASIAN                                                       43
  BLACK OR AFRICAN AMERICAN                                  102
  WHITE                                                      512
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D34V12, binary
                               cls
clus                              0   1
  DEL PEAK  5(4P16.3) MUTATED    10 275
  DEL PEAK  5(4P16.3) WILD-TYPE  28 583
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  5(4P16.3) MUTATED     10  275
  DEL PEAK  5(4P16.3) WILD-TYPE   28  583
                        clus
vv                       DEL PEAK  5(4P16.3) MUTATED
  HISPANIC OR LATINO                              10
  NOT HISPANIC OR LATINO                         275
                        clus
vv                       DEL PEAK  5(4P16.3) WILD-TYPE
  HISPANIC OR LATINO                                28
  NOT HISPANIC OR LATINO                           583
[1] 2 2
[1] FALSE

Clustering(35) Variable = DEL PEAK  6(4Q35.1) MUTATION ANALYSIS
D35V1, survival
                               sevent
clus2                             0   1
  DEL PEAK  6(4Q35.1) MUTATED   287  47
  DEL PEAK  6(4Q35.1) WILD-TYPE 629  81
  DEL PEAK  6(4Q35.1) MUTATED DEL PEAK  6(4Q35.1) WILD-TYPE 
                          334                           710 
  DEL PEAK  6(4Q35.1) MUTATED DEL PEAK  6(4Q35.1) WILD-TYPE 
                           47                            81 
$`DEL PEAK  6(4Q35.1) MUTATED`
TCGA-3C-AAAU TCGA-3C-AALJ TCGA-A1-A0SI TCGA-A1-A0SK TCGA-A1-A0SN TCGA-A1-A0SO 
      129.14        42.81        20.88        31.79        39.32        28.01 
TCGA-A2-A04P TCGA-A2-A04W TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CS TCGA-A2-A0CV 
       18.02       101.98        99.12        24.79        75.55        98.99 
TCGA-A2-A0CW TCGA-A2-A0D0 TCGA-A2-A0EM TCGA-A2-A0EQ TCGA-A2-A0EY TCGA-A2-A0SV 
      107.93        67.33       101.72        79.76        63.29        27.12 
TCGA-A2-A0SX TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T7 TCGA-A2-A0YE TCGA-A2-A0YJ 
       50.43        17.52        17.13        20.75        18.21        18.61 
TCGA-A2-A1FV TCGA-A2-A1G1 TCGA-A2-A25C TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A4RW 
       23.47        19.20        17.19        33.93        83.01         7.30 
TCGA-A2-A4RX TCGA-A2-A4S3 TCGA-A7-A0CE TCGA-A7-A0DA TCGA-A7-A13F TCGA-A7-A26G 
       24.39        21.90        35.31        35.67        25.15        23.74 
TCGA-A7-A26I TCGA-A7-A4SA TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF TCGA-A7-A56D 
       21.73        14.93        14.50        21.17        17.92        14.73 
TCGA-A7-A5ZV TCGA-A7-A6VV TCGA-A7-A6VW TCGA-A7-A6VX TCGA-A7-A6VY TCGA-A8-A06Q 
       12.10        10.29         9.37        10.42         8.75         1.02 
TCGA-A8-A06R TCGA-A8-A06T TCGA-A8-A06X TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A07B 
       17.98        53.06        31.00        26.01         1.02        43.00 
TCGA-A8-A07E TCGA-A8-A07G TCGA-A8-A07R TCGA-A8-A07W TCGA-A8-A084 TCGA-A8-A08B 
       19.99        18.97         8.98         9.99        15.06        38.01 
TCGA-A8-A08F TCGA-A8-A08I TCGA-A8-A08L TCGA-A8-A08P TCGA-A8-A08R TCGA-A8-A08X 
       33.01        12.00         9.99        31.00         0.99        43.00 
TCGA-A8-A092 TCGA-A8-A09B TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09R TCGA-A8-A09X 
       30.97        12.00        49.05        45.07         8.98        14.01 
TCGA-AC-A23E TCGA-AC-A2BK TCGA-AC-A2QI TCGA-AC-A3BB TCGA-AC-A5XS TCGA-AC-A62Y 
        2.37        38.53         0.92        32.45         1.55        17.42 
TCGA-AC-A6IW TCGA-AC-A7VC TCGA-AC-A8OQ TCGA-AN-A03Y TCGA-AN-A041 TCGA-AN-A046 
       13.58         0.03         1.12         0.33         0.23         0.33 
TCGA-AN-A049 TCGA-AN-A0AL TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FD 
        0.62         6.51         0.33         0.33         0.33         6.44 
TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FY TCGA-AN-A0XP TCGA-AN-A0XS 
        7.96         7.00         7.59         0.33         0.30         0.33 
TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AN-A0XW TCGA-AO-A03N TCGA-AO-A03V TCGA-AO-A0J2 
        0.33         0.33         5.59        66.77        29.13        32.78 
TCGA-AO-A0J4 TCGA-AO-A0J6 TCGA-AO-A0J7 TCGA-AO-A0JD TCGA-AO-A129 TCGA-AO-A12A 
       52.18        37.48        20.32        72.00       108.03        90.58 
TCGA-AO-A12D TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A1KR TCGA-AO-A1KS TCGA-AQ-A0Y5 
       64.04        48.36        41.62        70.39         0.53         5.65 
TCGA-AR-A0TP TCGA-AR-A0TR TCGA-AR-A0TT TCGA-AR-A0TY TCGA-AR-A0U0 TCGA-AR-A0U1 
      111.32         5.26        86.66        55.86        65.36       101.95 
TCGA-AR-A0U3 TCGA-AR-A0U4 TCGA-AR-A1AH TCGA-AR-A1AN TCGA-AR-A1AQ TCGA-AR-A1AR 
      114.02        85.97        75.55        43.73        43.07        17.23 
TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24K TCGA-AR-A24O TCGA-AR-A24S TCGA-AR-A24V 
       33.73       160.90        50.89        84.20        97.84        85.35 
TCGA-AR-A24W TCGA-AR-A251 TCGA-AR-A256 TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 
       50.96        78.48        93.83        20.45        10.59        77.62 
TCGA-B6-A0IB TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IO TCGA-B6-A0IQ TCGA-B6-A0RE 
      129.57       112.37       176.98       110.14       140.88       211.56 
TCGA-B6-A0RH TCGA-B6-A0RL TCGA-B6-A0RS TCGA-B6-A0WV TCGA-B6-A0WX TCGA-B6-A0WY 
      189.01        81.17       100.70        79.63        21.47       113.79 
TCGA-B6-A1KC TCGA-B6-A1KI TCGA-B6-A401 TCGA-B6-A402 TCGA-B6-A40B TCGA-BH-A0AV 
       43.59        73.51        85.35        74.99       103.63        59.84 
TCGA-BH-A0B0 TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0B6 TCGA-BH-A0BA 
       46.95        39.55        39.16        48.36        56.94        37.22 
TCGA-BH-A0BC TCGA-BH-A0BF TCGA-BH-A0BJ TCGA-BH-A0BP TCGA-BH-A0BR TCGA-BH-A0BT 
       32.02        25.71        21.70        48.69        53.69        45.57 
TCGA-BH-A0BV TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0DI TCGA-BH-A0DS 
       49.94        49.05        41.75        44.02        22.13         2.56 
TCGA-BH-A0E0 TCGA-BH-A0E6 TCGA-BH-A0E9 TCGA-BH-A0EB TCGA-BH-A0GZ TCGA-BH-A0HI 
        4.41         9.63        46.19        24.49        10.78        20.38 
TCGA-BH-A0HU TCGA-BH-A0HY TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0WA TCGA-BH-A18F 
       12.89        50.79         5.59        23.93        23.05         8.81 
TCGA-BH-A18J TCGA-BH-A18Q TCGA-BH-A18R TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A18V 
       20.12        55.63        37.55         7.36        51.39        51.16 
TCGA-BH-A1EN TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F6 
       69.93        42.28        12.00        17.69        25.81        97.48 
TCGA-BH-A1F8 TCGA-BH-A1FD TCGA-BH-A1FN TCGA-BH-A203 TCGA-BH-A208 TCGA-BH-A209 
       24.66        33.17        72.07        38.60        57.83       130.16 
TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-C8-A12L TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12U 
       18.64        23.51        11.93        12.66        11.77        12.66 
TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HJ TCGA-C8-A1HK 
        1.87         1.12         4.08        12.33         0.16        12.03 
TCGA-C8-A1HM TCGA-C8-A26W TCGA-C8-A26X TCGA-C8-A26Y TCGA-C8-A278 TCGA-C8-A27B 
        2.30         0.23         0.36         0.43         9.50         0.99 
TCGA-C8-A8HP TCGA-C8-A8HR TCGA-D8-A13Y TCGA-D8-A13Z TCGA-D8-A147 TCGA-D8-A1J8 
       13.02        13.41        11.90        20.88        19.20        14.17 
TCGA-D8-A1JA TCGA-D8-A1JE TCGA-D8-A1JF TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JL 
       16.50        18.90        12.03        20.09        20.12        20.09 
TCGA-D8-A1JM TCGA-D8-A1XG TCGA-D8-A1XK TCGA-D8-A1XL TCGA-D8-A1XO TCGA-D8-A1XQ 
       19.40        14.73        14.50        19.92        15.55        16.41 
TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XU TCGA-D8-A27H TCGA-D8-A27M TCGA-D8-A27T 
       15.85        16.31        12.99        13.05        13.48        13.08 
TCGA-D8-A73U TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14Q TCGA-E2-A14R TCGA-E2-A150 
       16.18        47.15        44.68        38.24        38.60        25.41 
TCGA-E2-A154 TCGA-E2-A158 TCGA-E2-A159 TCGA-E2-A15H TCGA-E2-A15M TCGA-E2-A15S 
       19.43        14.79        25.05        12.92        11.05        14.07 
TCGA-E2-A1B0 TCGA-E2-A1B6 TCGA-E2-A1BD TCGA-E2-A1IH TCGA-E2-A1II TCGA-E2-A1IO 
       53.62        28.50        17.10        33.73        33.70        20.98 
TCGA-E2-A1L7 TCGA-E2-A1L8 TCGA-E2-A1LA TCGA-E2-A1LG TCGA-E2-A1LH TCGA-E2-A1LI 
       27.42        39.62        24.59        18.87       106.75       102.61 
TCGA-E2-A573 TCGA-E2-A574 TCGA-E9-A1N6 TCGA-E9-A1N8 TCGA-E9-A1NC TCGA-E9-A1R3 
       34.92        26.56        13.48        12.00        39.55         2.56 
TCGA-E9-A1R4 TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RF TCGA-E9-A226 TCGA-E9-A22E 
        6.12        32.09        32.09         6.58        34.13        12.89 
TCGA-E9-A22G TCGA-E9-A244 TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A2JS TCGA-E9-A3HO 
       23.51         0.69         1.94         7.13        29.72        26.07 
TCGA-E9-A3QA TCGA-E9-A3X8 TCGA-E9-A54Y TCGA-E9-A5FL TCGA-EW-A1J1 TCGA-EW-A1OV 
       30.18        15.72        23.84         0.79        18.90        25.94 
TCGA-EW-A1OW TCGA-EW-A1OZ TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A1P8 TCGA-EW-A1PC 
       22.82        40.41        29.82        23.11         7.86         6.15 
TCGA-EW-A1PE TCGA-EW-A1PH TCGA-EW-A2FR TCGA-EW-A3U0 TCGA-GI-A2C8 TCGA-GI-A2C9 
       10.52        19.96        55.00        17.49         7.40       109.87 
TCGA-GM-A2DA TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A2DI TCGA-GM-A3XL TCGA-HN-A2NL 
      216.76        70.85        72.10        85.15        69.30         2.60 
TCGA-JL-A3YX TCGA-LL-A441 TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A5YP TCGA-LL-A6FR 
       11.57        11.44        15.32        14.70        14.79        16.08 
TCGA-LL-A73Z TCGA-LL-A8F5 TCGA-OL-A5D7 TCGA-OL-A5RW TCGA-OL-A5S0 TCGA-OL-A66K 
        7.46        14.73        58.52        36.36        20.38        41.92 
TCGA-OL-A6VO TCGA-PE-A5DD TCGA-PE-A5DE TCGA-PL-A8LX TCGA-S3-A6ZH TCGA-S3-AA10 
       28.21        64.21        86.96         0.16        16.93        15.39 
TCGA-S3-AA14 TCGA-UL-AAZ6 TCGA-WT-AB41 TCGA-WT-AB44 
       14.96        17.03        52.96        29.03 

$`DEL PEAK  6(4Q35.1) WILD-TYPE`
TCGA-3C-AALI TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT0 TCGA-5L-AAT1 TCGA-5T-A9QA 
      131.67        40.14        11.44        48.56        48.36         9.96 
TCGA-A1-A0SB TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH 
        8.52        14.37        43.43        48.10        14.27        47.24 
TCGA-A1-A0SJ TCGA-A1-A0SM TCGA-A1-A0SP TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04Q 
       13.68         7.96        19.20        18.21       104.81        78.41 
TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04V TCGA-A2-A04X TCGA-A2-A04Y 
      121.94        73.84        87.25        63.12        55.43        36.13 
TCGA-A2-A0CK TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CQ TCGA-A2-A0CR TCGA-A2-A0CT 
      136.73       114.81        92.48        88.60       107.93        75.25 
TCGA-A2-A0CU TCGA-A2-A0CX TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0D4 
        5.19        56.81        34.55        33.76        61.58        25.22 
TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0ER TCGA-A2-A0ES TCGA-A2-A0ET 
      134.40        80.28       107.61        74.40        72.00        35.05 
TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0ST TCGA-A2-A0SU 
       34.29        31.82        61.94        24.72        99.19        54.64 
TCGA-A2-A0SW TCGA-A2-A0SY TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T4 TCGA-A2-A0T5 
       44.88        44.28         8.38        49.84        20.52        17.46 
TCGA-A2-A0T6 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YF TCGA-A2-A0YG TCGA-A2-A0YH 
       18.90        32.55        25.28        50.47        21.90        21.67 
TCGA-A2-A0YI TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A0YM TCGA-A2-A0YT TCGA-A2-A1FW 
       49.48        19.33        48.46        31.73        23.77        17.36 
TCGA-A2-A1FX TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G4 TCGA-A2-A1G6 TCGA-A2-A259 
       60.72        22.45        20.25        19.56        16.47        52.47 
TCGA-A2-A25A TCGA-A2-A25B TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC 
      107.70        42.44        18.15       105.34        10.59        20.88 
TCGA-A2-A3KD TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX TCGA-A2-A3XY 
       39.65        29.98        32.75        49.48        47.31        34.98 
TCGA-A2-A3XZ TCGA-A2-A3Y0 TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S2 
       50.37        38.37        21.30        23.21        26.96        21.14 
TCGA-A7-A0CD TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0CJ TCGA-A7-A0D9 TCGA-A7-A0DB 
       38.30        34.29        35.47        30.61        37.45        33.11 
TCGA-A7-A0DC TCGA-A7-A13D TCGA-A7-A13E TCGA-A7-A13G TCGA-A7-A13H TCGA-A7-A26E 
       29.79        31.73        20.19        23.61        29.56        31.36 
TCGA-A7-A26F TCGA-A7-A26H TCGA-A7-A26J TCGA-A7-A2KD TCGA-A7-A3IY TCGA-A7-A3IZ 
       24.26        23.80        20.61        22.32        11.34        10.59 
TCGA-A7-A3J0 TCGA-A7-A3J1 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A426 TCGA-A7-A4SB 
       10.29        11.28        13.41        14.70        11.97        13.74 
TCGA-A7-A5ZW TCGA-A7-A5ZX TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06U TCGA-A8-A075 
       10.72        11.05        13.02        13.02        29.03        17.03 
TCGA-A8-A076 TCGA-A8-A079 TCGA-A8-A07F TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07L 
       53.98         9.01        18.97        14.01        12.00        32.05 
TCGA-A8-A07O TCGA-A8-A07P TCGA-A8-A07S TCGA-A8-A07U TCGA-A8-A07Z TCGA-A8-A082 
        9.99        10.98         7.99        24.99        45.07        18.05 
TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08C TCGA-A8-A08G TCGA-A8-A08J 
       36.95        13.02         0.99        28.96        19.96        37.05 
TCGA-A8-A08O TCGA-A8-A08S TCGA-A8-A08T TCGA-A8-A08Z TCGA-A8-A091 TCGA-A8-A093 
       31.00        33.01       112.08        40.01        33.01        17.95 
TCGA-A8-A095 TCGA-A8-A097 TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09C TCGA-A8-A09D 
       41.98        12.00         9.99         9.99         1.02        50.04 
TCGA-A8-A09K TCGA-A8-A09M TCGA-A8-A09N TCGA-A8-A09Q TCGA-A8-A09T TCGA-A8-A09V 
       29.98        33.07         1.02        25.02        19.04        15.02 
TCGA-A8-A09W TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A7 
        0.99        12.00        19.04        13.02        21.04         0.99 
TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23G TCGA-AC-A23H 
       27.02        17.03        38.04         0.95        10.85         5.72 
TCGA-AC-A2B8 TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK 
        1.48        99.35        40.57        55.43        36.99        38.79 
TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A2QH TCGA-AC-A2QJ TCGA-AC-A3HN TCGA-AC-A3OD 
       26.04        50.70        33.04         2.27        16.31        14.83 
TCGA-AC-A3QP TCGA-AC-A3TN TCGA-AC-A3W5 TCGA-AC-A3W6 TCGA-AC-A3YI TCGA-AC-A3YJ 
       22.19        14.99        16.57        19.79        23.24        24.79 
TCGA-AC-A62V TCGA-AC-A62X TCGA-AC-A6IV TCGA-AC-A6IX TCGA-AC-A6NO TCGA-AC-A7VB 
       11.44        13.71        18.67        12.26         1.68         8.22 
TCGA-AC-A8OP TCGA-AC-A8OR TCGA-AC-A8OS TCGA-AN-A03X TCGA-AN-A04A TCGA-AN-A04C 
       20.19         1.32         2.30         0.33         2.96         1.78 
TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AK TCGA-AN-A0AM TCGA-AN-A0FF TCGA-AN-A0FN 
        1.71         9.96         7.36         0.16         5.65         7.17 
TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FX TCGA-AN-A0FZ 
        6.28         7.04         0.33         0.36         0.33         0.33 
TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XR TCGA-AN-A0XV TCGA-AO-A03L 
        0.33         0.33        12.33         0.33         5.33        80.28 
TCGA-AO-A03M TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03U 
       61.35        81.63        95.70        68.75        47.87        58.95 
TCGA-AO-A0J3 TCGA-AO-A0J5 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JB 
       21.40        26.04        22.36        53.03        21.53        50.70 
TCGA-AO-A0JC TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JG TCGA-AO-A0JI TCGA-AO-A0JJ 
       50.86        76.77        21.37        26.24        50.24        62.04 
TCGA-AO-A0JL TCGA-AO-A0JM TCGA-AO-A124 TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 
       55.33        71.80       102.58        99.25       108.72       106.78 
TCGA-AO-A12B TCGA-AO-A12E TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KQ 
       98.27        57.30        28.37        14.73        82.62        61.87 
TCGA-AO-A1KT TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A1H2 TCGA-AQ-A1H3 
       17.79        24.79        26.93       130.09        15.62        32.52 
TCGA-AQ-A54N TCGA-AQ-A54O TCGA-AQ-A7U7 TCGA-AR-A0TQ TCGA-AR-A0TS TCGA-AR-A0TV 
        2.56        32.91        19.20        73.64        74.79        42.35 
TCGA-AR-A0TW TCGA-AR-A0TX TCGA-AR-A0TZ TCGA-AR-A0U2 TCGA-AR-A1AI TCGA-AR-A1AJ 
       98.93        64.83       107.24        83.87        61.84        52.77 
TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AM TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AS 
       51.25        48.82        76.11        43.56        39.98        37.81 
TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A24L TCGA-AR-A24M 
       76.21        61.28        63.62        62.14        94.22        96.89 
TCGA-AR-A24N TCGA-AR-A24P TCGA-AR-A24Q TCGA-AR-A24R TCGA-AR-A24T TCGA-AR-A24U 
       78.51         2.76       104.28        87.22        76.01        53.36 
TCGA-AR-A24X TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A255 
       83.77        79.00        89.00        73.18        72.76        58.92 
TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LL TCGA-AR-A2LM 
      143.21        20.25        62.86        54.21        66.15        52.11 
TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A2LR TCGA-AR-A5QM TCGA-AR-A5QN 
       38.17        39.39        40.54        20.38        54.74        16.04 
TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0I9 TCGA-B6-A0IA TCGA-B6-A0IC TCGA-B6-A0IE 
      143.38       149.59        12.13       220.90        50.70        65.72 
TCGA-B6-A0IG TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IP TCGA-B6-A0RG 
      146.50        18.77       126.12        84.59       110.93        68.45 
TCGA-B6-A0RI TCGA-B6-A0RM TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RP TCGA-B6-A0RQ 
      234.28        78.02       172.96       162.05       102.77       140.48 
TCGA-B6-A0RT TCGA-B6-A0RU TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WW 
       89.46       131.21       157.41        97.48       188.68        18.35 
TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 
      129.57       129.70       186.48        28.27        68.94        58.88 
TCGA-B6-A1KF TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A408 TCGA-B6-A40C TCGA-BH-A0AU 
      101.52       139.17       170.17        68.12        71.15        24.53 
TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0AZ TCGA-BH-A0B2 TCGA-BH-A0B7 TCGA-BH-A0B9 
       20.45        25.55        28.50        40.83        56.98        51.68 
TCGA-BH-A0BD TCGA-BH-A0BG TCGA-BH-A0BL TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BQ 
       18.21        24.85        44.05        61.68        35.67        27.19 
TCGA-BH-A0BS TCGA-BH-A0BW TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DE 
       53.95        11.67        48.13        42.90        45.83        31.17 
TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DO TCGA-BH-A0DP 
       23.44        38.01        13.91        48.23        17.26        15.65 
TCGA-BH-A0DQ TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E1 
        3.22        38.47        67.86        47.41        16.27        15.68 
TCGA-BH-A0E2 TCGA-BH-A0E7 TCGA-BH-A0EA TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0GY 
       14.30        44.81        32.58        31.00        24.43        30.35 
TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H7 TCGA-BH-A0H9 
       15.16        37.78        35.51        24.56        23.08        41.00 
TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HK TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ 
       52.96        26.50         5.85         2.50        13.61        36.85 
TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A18G 
       51.32        27.25        24.95        42.35        44.81         2.01 
TCGA-BH-A18I TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P 
        7.23        90.84        26.66        72.56        37.74        30.28 
TCGA-BH-A18S TCGA-BH-A1EO TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EW TCGA-BH-A1EX 
       66.05        91.99       113.82        82.85        55.69        49.58 
TCGA-BH-A1F2 TCGA-BH-A1F5 TCGA-BH-A1FB TCGA-BH-A1FC TCGA-BH-A1FE TCGA-BH-A1FG 
       31.53        89.16       120.62       114.15        74.73       122.89 
TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FM TCGA-BH-A1FR TCGA-BH-A1FU 
       36.92        63.35        55.00        45.63       144.59        72.07 
TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A204 TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 
       28.14        26.14        83.31        10.65         6.44        20.12 
TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A6R8 TCGA-BH-A6R9 TCGA-BH-A8FY 
       10.52       109.28         8.94         9.63         5.26         9.70 
TCGA-BH-A8FZ TCGA-BH-A8G0 TCGA-BH-AB28 TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12Q 
       18.87        21.76         9.44        11.77        11.77        12.66 
TCGA-C8-A12V TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A12Z TCGA-C8-A130 TCGA-C8-A131 
       12.66        12.66        12.66         0.39         3.16         2.24 
TCGA-C8-A135 TCGA-C8-A137 TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HL 
        1.05         4.11        10.92        11.34        11.28        10.42 
TCGA-C8-A1HN TCGA-C8-A26V TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A275 
        3.25         0.30         8.28         9.67         9.53         0.03 
TCGA-C8-A27A TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-C8-A8HQ TCGA-C8-A9FZ TCGA-D8-A140 
       12.20         0.03         0.23        12.49        19.46        13.25 
TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A145 TCGA-D8-A146 TCGA-D8-A1J9 
       20.58        13.97        14.17        13.48        21.14        17.49 
TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JD TCGA-D8-A1JG TCGA-D8-A1JH TCGA-D8-A1JI 
       18.71        15.78        18.15        12.03        14.01        18.97 
TCGA-D8-A1JN TCGA-D8-A1JP TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X5 
       20.38        21.01        12.20        13.32        14.70        18.58 
TCGA-D8-A1X6 TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XB 
       17.79        16.73        25.74        23.90        27.58        18.15 
TCGA-D8-A1XC TCGA-D8-A1XD TCGA-D8-A1XF TCGA-D8-A1XJ TCGA-D8-A1XM TCGA-D8-A1XT 
       12.39        17.16        15.22        21.83        17.69         6.35 
TCGA-D8-A1XV TCGA-D8-A1XW TCGA-D8-A1XY TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A1Y1 
       15.16        12.66        16.54        15.32        15.52         9.93 
TCGA-D8-A1Y2 TCGA-D8-A1Y3 TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27G TCGA-D8-A27I 
       14.24        14.14        17.42        16.04        13.45        14.43 
TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27R TCGA-D8-A27V 
        9.44        16.41         4.80         0.76        10.09        12.53 
TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-D8-A73W TCGA-D8-A73X 
       12.26        33.37        18.51        21.67         8.02        12.10 
TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10B 
       43.00        34.42        27.52        46.59        40.41        37.51 
TCGA-E2-A10C TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14P TCGA-E2-A14S TCGA-E2-A14T 
       40.11        28.44        28.87        40.96        33.17        33.30 
TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14W TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A14Z 
       43.33        34.26        32.02        31.96        28.60        18.51 
TCGA-E2-A152 TCGA-E2-A153 TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A15A TCGA-E2-A15C 
       27.12        23.24        21.04        23.87        23.34        22.82 
TCGA-E2-A15D TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15I TCGA-E2-A15J 
       17.29        20.71        21.63        18.21        17.42        19.40 
TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15O TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A15T 
        9.04        20.58        13.02        19.56        17.06        14.99 
TCGA-E2-A1AZ TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1BC TCGA-E2-A1IE 
       60.53        53.03        33.01        32.35        16.47        38.30 
TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN 
       37.41        32.78        28.44        22.65         3.88        22.19 
TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L9 TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LK 
       11.08        54.18        19.66        40.47        28.90         8.75 
TCGA-E2-A1LL TCGA-E2-A2P5 TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 
       43.04        16.93         5.52        15.72         8.28        30.61 
TCGA-E2-A576 TCGA-E2-A9RU TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N9 
       34.29        12.85        34.82        32.88        36.82        13.12 
TCGA-E9-A1NA TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1NI 
       36.56        12.59        35.77        35.24        25.84         9.86 
TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1R7 
       11.90        28.27        34.95         3.02         2.76        21.21 
TCGA-E9-A1RC TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RG TCGA-E9-A1RH TCGA-E9-A1RI 
       40.24         1.12        34.65        21.27        34.59        35.64 
TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A22D 
       32.05        12.53        13.32        39.09        22.75        41.03 
TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A247 TCGA-E9-A24A TCGA-E9-A295 TCGA-E9-A2JT 
       20.71        17.06        27.22        24.56         0.72         0.76 
TCGA-E9-A3Q9 TCGA-E9-A54X TCGA-E9-A5FK TCGA-E9-A5UO TCGA-E9-A5UP TCGA-E9-A6HE 
       18.41        12.33        14.70        13.81        14.40        15.39 
TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J2 TCGA-EW-A1J3 
       12.20        39.72         8.48        18.21        13.25        16.57 
TCGA-EW-A1J5 TCGA-EW-A1J6 TCGA-EW-A1OX TCGA-EW-A1OY TCGA-EW-A1P0 TCGA-EW-A1P1 
       15.68        28.77        29.95        29.85        41.13        39.78 
TCGA-EW-A1P3 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1PA TCGA-EW-A1PB TCGA-EW-A1PD 
       52.96        18.48        30.08        18.90        19.99        13.94 
TCGA-EW-A1PF TCGA-EW-A1PG TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A2FW TCGA-EW-A3E8 
       14.43        34.55        52.73        25.91        22.09        34.03 
TCGA-EW-A423 TCGA-EW-A424 TCGA-GM-A2D9 TCGA-GM-A2DB TCGA-GM-A2DC TCGA-GM-A2DD 
       10.16        23.51        59.57        79.10        83.34        75.02 
TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A2DO TCGA-GM-A3NW 
       86.96       115.69       106.06       101.62        85.35       110.50 
TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX 
       38.20        43.73        66.38        72.03        13.55        18.12 
TCGA-HN-A2OB TCGA-JL-A3YW TCGA-LD-A66U TCGA-LD-A74U TCGA-LD-A7W5 TCGA-LD-A7W6 
       62.43        11.84        21.24        13.22         7.10        13.28 
TCGA-LD-A9QF TCGA-LL-A440 TCGA-LL-A442 TCGA-LL-A50Y TCGA-LL-A5YL TCGA-LL-A5YO 
       10.62        24.95        10.95        25.05        17.06        14.47 
TCGA-LL-A6FP TCGA-LL-A6FQ TCGA-LL-A73Y TCGA-LL-A740 TCGA-LL-A7SZ TCGA-LL-A7T0 
       22.26         2.63        15.68        14.50        14.70        12.36 
TCGA-LL-A9Q3 TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5D8 
       14.07        27.91        22.39         2.10        36.30        31.99 
TCGA-OL-A5DA TCGA-OL-A5RU TCGA-OL-A5RV TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5RZ 
       58.62        40.08        34.92        28.87        24.72        22.32 
TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66L TCGA-OL-A66N TCGA-OL-A66O 
       26.70        23.47        65.62        42.77        26.04        17.36 
TCGA-OL-A66P TCGA-OL-A6VQ TCGA-OL-A6VR TCGA-OL-A97C TCGA-PE-A5DC TCGA-PL-A8LY 
       14.07        19.73        40.11         8.91        47.01         0.26 
TCGA-PL-A8LZ TCGA-S3-A6ZF TCGA-S3-A6ZG TCGA-S3-AA0Z TCGA-S3-AA11 TCGA-S3-AA12 
        9.93        16.50        13.12        16.80        13.84        15.35 
TCGA-S3-AA15 TCGA-S3-AA17 TCGA-UU-A93S TCGA-W8-A86G TCGA-XX-A899 TCGA-XX-A89A 
       13.84        13.94         3.81        11.41        15.35        16.04 
TCGA-Z7-A8R5 TCGA-Z7-A8R6 
      108.07       107.05 

  DEL PEAK  6(4Q35.1) MUTATED DEL PEAK  6(4Q35.1) WILD-TYPE 
                         0.03                          0.03 
  DEL PEAK  6(4Q35.1) MUTATED DEL PEAK  6(4Q35.1) WILD-TYPE 
                       216.76                        234.28 
  DEL PEAK  6(4Q35.1) MUTATED DEL PEAK  6(4Q35.1) WILD-TYPE 
                       22.935                        25.005 
[1] "0.0 - 216.8 (22.9)" "0.0 - 234.3 (25.0)"
[1] "hr=" "1.3"
D35V2, continuous
                               vv
clus                            STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  DEL PEAK  6(4Q35.1) MUTATED        24       18        1        0       126
  DEL PEAK  6(4Q35.1) WILD-TYPE      65       63        7        3       227
                               vv
clus                            STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  DEL PEAK  6(4Q35.1) MUTATED          82         0         48          9
  DEL PEAK  6(4Q35.1) WILD-TYPE       163         2        102         20
                               vv
clus                            STAGE IIIC STAGE IV STAGE TIS STAGE X
  DEL PEAK  6(4Q35.1) MUTATED           17        8         0       3
  DEL PEAK  6(4Q35.1) WILD-TYPE         46       12         1      10
D35V3, multiclass
            clus
vv           DEL PEAK  6(4Q35.1) MUTATED DEL PEAK  6(4Q35.1) WILD-TYPE
  STAGE I                             24                            65
  STAGE IA                            18                            63
  STAGE IB                             1                             7
  STAGE II                             0                             3
  STAGE IIA                          126                           227
  STAGE IIB                           82                           163
  STAGE III                            0                             2
  STAGE IIIA                          48                           102
  STAGE IIIB                           9                            20
  STAGE IIIC                          17                            46
  STAGE IV                             8                            12
  STAGE TIS                            0                             1
  STAGE X                              3                            10
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                             T1  T2  T3  T4
  DEL PEAK  6(4Q35.1) MUTATED    66 220  36  16
  DEL PEAK  6(4Q35.1) WILD-TYPE 206 396  94  24
D35V4, multiclass
    clus
vv   DEL PEAK  6(4Q35.1) MUTATED DEL PEAK  6(4Q35.1) WILD-TYPE
  T1                          66                           206
  T2                         220                           396
  T3                          36                            94
  T4                          16                            24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                             N0  N1  N2  N3
  DEL PEAK  6(4Q35.1) MUTATED   161 112  41  20
  DEL PEAK  6(4Q35.1) WILD-TYPE 340 238  76  55
D35V5, multiclass
    clus
vv   DEL PEAK  6(4Q35.1) MUTATED DEL PEAK  6(4Q35.1) WILD-TYPE
  N0                         161                           340
  N1                         112                           238
  N2                          41                            76
  N3                          20                            55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D35V6, binary
                               cls
clus                              0   1
  DEL PEAK  6(4Q35.1) MUTATED   296   8
  DEL PEAK  6(4Q35.1) WILD-TYPE 583  13
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  6(4Q35.1) MUTATED    296    8
  DEL PEAK  6(4Q35.1) WILD-TYPE  583   13
   clus
vv  DEL PEAK  6(4Q35.1) MUTATED DEL PEAK  6(4Q35.1) WILD-TYPE
  0                         296                           583
  1                           8                            13
[1] 2 2
[1] FALSE
D35V7, binary
                               cls
clus                              0   1
  DEL PEAK  6(4Q35.1) MUTATED   338   2
  DEL PEAK  6(4Q35.1) WILD-TYPE 713   9
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  6(4Q35.1) MUTATED    338    2
  DEL PEAK  6(4Q35.1) WILD-TYPE  713    9
        clus
vv       DEL PEAK  6(4Q35.1) MUTATED DEL PEAK  6(4Q35.1) WILD-TYPE
  FEMALE                         338                           713
  MALE                             2                             9
[1] 2 2
[1] FALSE
                               vv
clus                            INFILTRATING CARCINOMA NOS
  DEL PEAK  6(4Q35.1) MUTATED                            1
  DEL PEAK  6(4Q35.1) WILD-TYPE                          0
                               vv
clus                            INFILTRATING DUCTAL CARCINOMA
  DEL PEAK  6(4Q35.1) MUTATED                             284
  DEL PEAK  6(4Q35.1) WILD-TYPE                           479
                               vv
clus                            INFILTRATING LOBULAR CARCINOMA
  DEL PEAK  6(4Q35.1) MUTATED                               34
  DEL PEAK  6(4Q35.1) WILD-TYPE                            158
                               vv
clus                            MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  DEL PEAK  6(4Q35.1) MUTATED                     4                     3
  DEL PEAK  6(4Q35.1) WILD-TYPE                   2                     1
                               vv
clus                            MIXED HISTOLOGY (PLEASE SPECIFY)
  DEL PEAK  6(4Q35.1) MUTATED                                  3
  DEL PEAK  6(4Q35.1) WILD-TYPE                               27
                               vv
clus                            MUCINOUS CARCINOMA OTHER  SPECIFY
  DEL PEAK  6(4Q35.1) MUTATED                    0             10
  DEL PEAK  6(4Q35.1) WILD-TYPE                 17             38
D35V8, multiclass
                                  clus
vv                                 DEL PEAK  6(4Q35.1) MUTATED
  INFILTRATING CARCINOMA NOS                                 1
  INFILTRATING DUCTAL CARCINOMA                            284
  INFILTRATING LOBULAR CARCINOMA                            34
  MEDULLARY CARCINOMA                                        4
  METAPLASTIC CARCINOMA                                      3
  MIXED HISTOLOGY (PLEASE SPECIFY)                           3
  MUCINOUS CARCINOMA                                         0
  OTHER  SPECIFY                                            10
                                  clus
vv                                 DEL PEAK  6(4Q35.1) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                   0
  INFILTRATING DUCTAL CARCINOMA                              479
  INFILTRATING LOBULAR CARCINOMA                             158
  MEDULLARY CARCINOMA                                          2
  METAPLASTIC CARCINOMA                                        1
  MIXED HISTOLOGY (PLEASE SPECIFY)                            27
  MUCINOUS CARCINOMA                                          17
  OTHER  SPECIFY                                              38
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D35V9, binary
                               cls
clus                              0   1
  DEL PEAK  6(4Q35.1) MUTATED    97 243
  DEL PEAK  6(4Q35.1) WILD-TYPE 191 531
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  6(4Q35.1) MUTATED     97  243
  DEL PEAK  6(4Q35.1) WILD-TYPE  191  531
     clus
vv    DEL PEAK  6(4Q35.1) MUTATED DEL PEAK  6(4Q35.1) WILD-TYPE
  NO                           97                           191
  YES                         243                           531
[1] 2 2
[1] FALSE
D35V10, continuous
                               vv
clus                            AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK  6(4Q35.1) MUTATED                                  1    23
  DEL PEAK  6(4Q35.1) WILD-TYPE                                0    37
                               vv
clus                            BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK  6(4Q35.1) MUTATED                          69   217
  DEL PEAK  6(4Q35.1) WILD-TYPE                       101   519
D35V11, multiclass
                                  clus
vv                                 DEL PEAK  6(4Q35.1) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                           1
  ASIAN                                                     23
  BLACK OR AFRICAN AMERICAN                                 69
  WHITE                                                    217
                                  clus
vv                                 DEL PEAK  6(4Q35.1) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                             0
  ASIAN                                                       37
  BLACK OR AFRICAN AMERICAN                                  101
  WHITE                                                      519
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D35V12, binary
                               cls
clus                              0   1
  DEL PEAK  6(4Q35.1) MUTATED     7 275
  DEL PEAK  6(4Q35.1) WILD-TYPE  31 583
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  6(4Q35.1) MUTATED      7  275
  DEL PEAK  6(4Q35.1) WILD-TYPE   31  583
                        clus
vv                       DEL PEAK  6(4Q35.1) MUTATED
  HISPANIC OR LATINO                               7
  NOT HISPANIC OR LATINO                         275
                        clus
vv                       DEL PEAK  6(4Q35.1) WILD-TYPE
  HISPANIC OR LATINO                                31
  NOT HISPANIC OR LATINO                           583
[1] 2 2
[1] FALSE

Clustering(36) Variable = DEL PEAK  7(5Q11.2) MUTATION ANALYSIS
D36V1, survival
                               sevent
clus2                             0   1
  DEL PEAK  7(5Q11.2) MUTATED   230  40
  DEL PEAK  7(5Q11.2) WILD-TYPE 686  88
  DEL PEAK  7(5Q11.2) MUTATED DEL PEAK  7(5Q11.2) WILD-TYPE 
                          270                           774 
  DEL PEAK  7(5Q11.2) MUTATED DEL PEAK  7(5Q11.2) WILD-TYPE 
                           40                            88 
$`DEL PEAK  7(5Q11.2) MUTATED`
TCGA-4H-AAAK TCGA-5L-AAT1 TCGA-A1-A0SG TCGA-A1-A0SK TCGA-A1-A0SO TCGA-A1-A0SP 
       11.44        48.36        14.27        31.79        28.01        19.20 
TCGA-A2-A04P TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04W TCGA-A2-A0CM TCGA-A2-A0CX 
       18.02        73.84        87.25       101.98        24.79        56.81 
TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0EQ TCGA-A2-A0EX TCGA-A2-A0EY TCGA-A2-A0SX 
       67.33        34.55        79.76        24.72        63.29        50.43 
TCGA-A2-A0T1 TCGA-A2-A0YE TCGA-A2-A0YH TCGA-A2-A0YJ TCGA-A2-A0YM TCGA-A2-A1G1 
       17.13        18.21        21.67        18.61        31.73        19.20 
TCGA-A2-A25E TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XX TCGA-A2-A3XY TCGA-A2-A3Y0 
      105.34        33.93        83.01        47.31        34.98        38.37 
TCGA-A2-A4RW TCGA-A2-A4S3 TCGA-A7-A0DA TCGA-A7-A13D TCGA-A7-A13E TCGA-A7-A26G 
        7.30        21.90        35.67        31.73        20.19        23.74 
TCGA-A7-A26I TCGA-A7-A2KD TCGA-A7-A4SA TCGA-A7-A4SB TCGA-A7-A4SD TCGA-A7-A4SE 
       21.73        22.32        14.93        13.74        14.50        21.17 
TCGA-A7-A56D TCGA-A7-A5ZV TCGA-A7-A6VW TCGA-A7-A6VY TCGA-A8-A06R TCGA-A8-A06X 
       14.73        12.10         9.37         8.75        17.98        31.00 
TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A07G TCGA-A8-A07O TCGA-A8-A07U TCGA-A8-A084 
       17.03        53.98        18.97         9.99        24.99        15.06 
TCGA-A8-A08F TCGA-A8-A08R TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A09A TCGA-A8-A09K 
       33.01         0.99       112.08        43.00         9.99        29.98 
TCGA-A8-A09M TCGA-A8-A09T TCGA-AC-A2BK TCGA-AC-A62X TCGA-AC-A8OQ TCGA-AN-A041 
       33.07        19.04        38.53        13.71         1.12         0.23 
TCGA-AN-A04D TCGA-AN-A0AK TCGA-AN-A0AL TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FJ 
        1.71         7.36         6.51         0.33         0.33         7.96 
TCGA-AN-A0FL TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FX TCGA-AN-A0FY TCGA-AN-A0FZ 
        7.59         7.04         0.33         0.33         0.33         0.33 
TCGA-AN-A0XU TCGA-AO-A03M TCGA-AO-A0J4 TCGA-AO-A0J5 TCGA-AO-A0J6 TCGA-AO-A0JL 
        0.33        61.35        52.18        26.04        37.48        55.33 
TCGA-AO-A129 TCGA-AO-A12F TCGA-AO-A1KR TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A54N 
      108.03        48.36        70.39        26.93       130.09         2.56 
TCGA-AR-A0TP TCGA-AR-A0TT TCGA-AR-A0TV TCGA-AR-A0TW TCGA-AR-A0U0 TCGA-AR-A0U1 
      111.32        86.66        42.35        98.93        65.36       101.95 
TCGA-AR-A0U2 TCGA-AR-A0U4 TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AQ 
       83.87        85.97        75.55        61.84        52.77        43.07 
TCGA-AR-A1AR TCGA-AR-A1AU TCGA-AR-A1AY TCGA-AR-A24K TCGA-AR-A24S TCGA-AR-A24U 
       17.23        76.21        33.73        50.89        97.84        53.36 
TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A251 TCGA-AR-A256 TCGA-AR-A2LR TCGA-B6-A0I1 
       79.00        89.00        78.48        93.83        20.38        77.62 
TCGA-B6-A0IB TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IJ TCGA-B6-A0IQ TCGA-B6-A0RP 
      129.57        65.72       146.50       176.98       140.88       102.77 
TCGA-B6-A0RS TCGA-B6-A0RU TCGA-B6-A0WV TCGA-B6-A0WX TCGA-B6-A0X1 TCGA-B6-A1KF 
      100.70       131.21        79.63        21.47       186.48       101.52 
TCGA-B6-A402 TCGA-BH-A0AU TCGA-BH-A0AV TCGA-BH-A0B3 TCGA-BH-A0B7 TCGA-BH-A0B9 
       74.99        24.53        59.84        39.55        56.98        51.68 
TCGA-BH-A0BG TCGA-BH-A0BL TCGA-BH-A0BP TCGA-BH-A0BT TCGA-BH-A0BW TCGA-BH-A0C0 
       24.85        44.05        48.69        45.57        11.67        41.75 
TCGA-BH-A0E0 TCGA-BH-A0E6 TCGA-BH-A0HA TCGA-BH-A0HY TCGA-BH-A0WA TCGA-BH-A18T 
        4.41         9.63        52.96        50.79        23.05         7.36 
TCGA-BH-A18V TCGA-BH-A1ES TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1F0 TCGA-BH-A1F2 
       51.16       113.82        42.28        12.00        25.81        31.53 
TCGA-BH-A1FC TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FM TCGA-BH-A1FU 
      114.15        33.17        74.73       122.89        45.63        72.07 
TCGA-BH-A203 TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A5IZ TCGA-C8-A12L TCGA-C8-A12M 
       38.60        57.83       130.16        18.64        11.93        11.77 
TCGA-C8-A12O TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A135 
       12.66        12.66        12.66         3.16         2.24         1.05 
TCGA-C8-A138 TCGA-C8-A1HF TCGA-C8-A1HJ TCGA-C8-A26W TCGA-C8-A26X TCGA-C8-A278 
        4.08        10.92         0.16         0.23         0.36         9.50 
TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A8HR TCGA-C8-A9FZ TCGA-D8-A13Z TCGA-D8-A142 
       12.20         0.99        13.41        19.46        20.88        13.97 
TCGA-D8-A143 TCGA-D8-A146 TCGA-D8-A147 TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JF 
       14.17        21.14        19.20        16.50        18.71        12.03 
TCGA-D8-A1JG TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JP TCGA-D8-A1XA 
       12.03        20.12        20.09        19.40        21.01        27.58 
TCGA-D8-A1XF TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XL TCGA-D8-A1XQ TCGA-D8-A1XT 
       15.22        21.83        14.50        19.92        16.41         6.35 
TCGA-D8-A1XW TCGA-D8-A1XZ TCGA-D8-A1Y3 TCGA-D8-A27F TCGA-D8-A27H TCGA-D8-A27R 
       12.66        15.32        14.14        16.04        13.05        10.09 
TCGA-E2-A14N TCGA-E2-A14R TCGA-E2-A150 TCGA-E2-A155 TCGA-E2-A158 TCGA-E2-A159 
       47.15        38.60        25.41        21.04        14.79        25.05 
TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B6 TCGA-E2-A1II TCGA-E2-A1IO TCGA-E2-A1L6 
       60.53        53.62        28.50        33.70        20.98        54.18 
TCGA-E2-A1L7 TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A573 TCGA-E2-A574 
       27.42       106.75       102.61         8.75        34.92        26.56 
TCGA-E9-A1N8 TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RH 
       12.00        39.55        12.59        32.09        40.24        34.59 
TCGA-E9-A22A TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A243 TCGA-E9-A244 
       39.09        41.03        12.89        23.51        17.06         0.69 
TCGA-E9-A247 TCGA-E9-A2JS TCGA-EW-A1J1 TCGA-EW-A1OV TCGA-EW-A1OW TCGA-EW-A1P4 
       27.22        29.72        18.90        25.94        22.82        29.82 
TCGA-EW-A1P8 TCGA-EW-A1PA TCGA-EW-A1PH TCGA-EW-A2FV TCGA-GI-A2C9 TCGA-GM-A2DD 
        7.86        18.90        19.96        25.91       109.87        75.02 
TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A3XL TCGA-HN-A2NL TCGA-JL-A3YW TCGA-LL-A441 
       70.85        72.10        69.30         2.60        11.84        11.44 
TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A5YP TCGA-LL-A6FR TCGA-LL-A7SZ TCGA-LL-A7T0 
       15.32        14.70        14.79        16.08        14.70        12.36 
TCGA-LL-A8F5 TCGA-OL-A5D7 TCGA-OL-A5RW TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66I 
       14.73        58.52        36.36        22.32        20.38        23.47 
TCGA-OL-A66J TCGA-OL-A6VO TCGA-PL-A8LX TCGA-PL-A8LZ TCGA-S3-AA10 TCGA-WT-AB41 
       65.62        28.21         0.16         9.93        15.39        52.96 

$`DEL PEAK  7(5Q11.2) WILD-TYPE`
TCGA-3C-AAAU TCGA-3C-AALI TCGA-3C-AALJ TCGA-3C-AALK TCGA-5L-AAT0 TCGA-5T-A9QA 
      129.14       131.67        42.81        40.14        48.56         9.96 
TCGA-A1-A0SB TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SH TCGA-A1-A0SI 
        8.52        14.37        43.43        48.10        47.24        20.88 
TCGA-A1-A0SJ TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04Q 
       13.68         7.96        39.32        18.21       104.81        78.41 
TCGA-A2-A04R TCGA-A2-A04V TCGA-A2-A04X TCGA-A2-A04Y TCGA-A2-A0CK TCGA-A2-A0CL 
      121.94        63.12        55.43        36.13       136.73        99.12 
TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CQ TCGA-A2-A0CR TCGA-A2-A0CS TCGA-A2-A0CT 
      114.81        92.48        88.60       107.93        75.55        75.25 
TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0D4 
        5.19        98.99       107.93        33.76        61.58        25.22 
TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0ER TCGA-A2-A0ES 
      101.72       134.40        80.28       107.61        74.40        72.00 
TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0ST TCGA-A2-A0SU 
       35.05        34.29        31.82        61.94        99.19        54.64 
TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0SY TCGA-A2-A0T0 TCGA-A2-A0T2 TCGA-A2-A0T3 
       27.12        44.88        44.28        17.52         8.38        49.84 
TCGA-A2-A0T4 TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD 
       20.52        17.46        18.90        20.75        32.55        25.28 
TCGA-A2-A0YF TCGA-A2-A0YG TCGA-A2-A0YI TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A0YT 
       50.47        21.90        49.48        19.33        48.46        23.77 
TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1FX TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G4 
       23.47        17.36        60.72        22.45        20.25        19.56 
TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25A TCGA-A2-A25B TCGA-A2-A25C TCGA-A2-A25D 
       16.47        52.47       107.70        42.44        17.19        18.15 
TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW 
       10.59        20.88        39.65        29.98        32.75        49.48 
TCGA-A2-A3XZ TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S2 
       50.37        24.39        21.30        23.21        26.96        21.14 
TCGA-A7-A0CD TCGA-A7-A0CE TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0CJ TCGA-A7-A0D9 
       38.30        35.31        34.29        35.47        30.61        37.45 
TCGA-A7-A0DB TCGA-A7-A0DC TCGA-A7-A13F TCGA-A7-A13G TCGA-A7-A13H TCGA-A7-A26E 
       33.11        29.79        25.15        23.61        29.56        31.36 
TCGA-A7-A26F TCGA-A7-A26H TCGA-A7-A26J TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J0 
       24.26        23.80        20.61        11.34        10.59        10.29 
TCGA-A7-A3J1 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A426 TCGA-A7-A4SF TCGA-A7-A5ZW 
       11.28        13.41        14.70        11.97        17.92        10.72 
TCGA-A7-A5ZX TCGA-A7-A6VV TCGA-A7-A6VX TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06Q 
       11.05        10.29        10.42        13.02        13.02         1.02 
TCGA-A8-A06T TCGA-A8-A06U TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A079 TCGA-A8-A07B 
       53.06        29.03        26.01         1.02         9.01        43.00 
TCGA-A8-A07E TCGA-A8-A07F TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07L TCGA-A8-A07P 
       19.99        18.97        14.01        12.00        32.05        10.98 
TCGA-A8-A07R TCGA-A8-A07S TCGA-A8-A07W TCGA-A8-A07Z TCGA-A8-A082 TCGA-A8-A085 
        8.98         7.99         9.99        45.07        18.05        36.95 
TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08B TCGA-A8-A08C TCGA-A8-A08G TCGA-A8-A08I 
       13.02         0.99        38.01        28.96        19.96        12.00 
TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08O TCGA-A8-A08P TCGA-A8-A08S TCGA-A8-A08Z 
       37.05         9.99        31.00        31.00        33.01        40.01 
TCGA-A8-A091 TCGA-A8-A092 TCGA-A8-A093 TCGA-A8-A095 TCGA-A8-A097 TCGA-A8-A099 
       33.01        30.97        17.95        41.98        12.00         9.99 
TCGA-A8-A09B TCGA-A8-A09C TCGA-A8-A09D TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09N 
       12.00         1.02        50.04        49.05        45.07         1.02 
TCGA-A8-A09Q TCGA-A8-A09R TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A09X TCGA-A8-A0A1 
       25.02         8.98        15.02         0.99        14.01        12.00 
TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A7 TCGA-A8-A0A9 TCGA-A8-A0AB 
       19.04        13.02        21.04         0.99        27.02        17.03 
TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23E TCGA-AC-A23G TCGA-AC-A23H TCGA-AC-A2B8 
       38.04         0.95         2.37        10.85         5.72         1.48 
TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM 
       99.35        40.57        55.43        36.99        38.79        26.04 
TCGA-AC-A2FO TCGA-AC-A2QH TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3HN 
       50.70        33.04         0.92         2.27        32.45        16.31 
TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3TN TCGA-AC-A3W5 TCGA-AC-A3W6 TCGA-AC-A3YI 
       14.83        22.19        14.99        16.57        19.79        23.24 
TCGA-AC-A3YJ TCGA-AC-A5XS TCGA-AC-A62V TCGA-AC-A62Y TCGA-AC-A6IV TCGA-AC-A6IW 
       24.79         1.55        11.44        17.42        18.67        13.58 
TCGA-AC-A6IX TCGA-AC-A6NO TCGA-AC-A7VB TCGA-AC-A7VC TCGA-AC-A8OP TCGA-AC-A8OR 
       12.26         1.68         8.22         0.03        20.19         1.32 
TCGA-AC-A8OS TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A046 TCGA-AN-A049 TCGA-AN-A04A 
        2.30         0.33         0.33         0.33         0.62         2.96 
TCGA-AN-A04C TCGA-AN-A0AJ TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0FD TCGA-AN-A0FF 
        1.78         9.96         0.16         0.33         6.44         5.65 
TCGA-AN-A0FK TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FW TCGA-AN-A0XL TCGA-AN-A0XN 
        7.00         7.17         6.28         0.36         0.33         0.33 
TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XV 
       12.33         0.30         0.33         0.33         0.33         5.33 
TCGA-AN-A0XW TCGA-AO-A03L TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03R 
        5.59        80.28        66.77        81.63        95.70        68.75 
TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J7 
       47.87        58.95        29.13        32.78        21.40        20.32 
TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JC TCGA-AO-A0JD 
       22.36        53.03        21.53        50.70        50.86        72.00 
TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JG TCGA-AO-A0JI TCGA-AO-A0JJ TCGA-AO-A0JM 
       76.77        21.37        26.24        50.24        62.04        71.80 
TCGA-AO-A124 TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 TCGA-AO-A12A TCGA-AO-A12B 
      102.58        99.25       108.72       106.78        90.58        98.27 
TCGA-AO-A12D TCGA-AO-A12E TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP 
       64.04        57.30        41.62        28.37        14.73        82.62 
TCGA-AO-A1KQ TCGA-AO-A1KS TCGA-AO-A1KT TCGA-AQ-A04H TCGA-AQ-A0Y5 TCGA-AQ-A1H2 
       61.87         0.53        17.79        24.79         5.65        15.62 
TCGA-AQ-A1H3 TCGA-AQ-A54O TCGA-AQ-A7U7 TCGA-AR-A0TQ TCGA-AR-A0TR TCGA-AR-A0TS 
       32.52        32.91        19.20        73.64         5.26        74.79 
TCGA-AR-A0TX TCGA-AR-A0TY TCGA-AR-A0TZ TCGA-AR-A0U3 TCGA-AR-A1AK TCGA-AR-A1AL 
       64.83        55.86       107.24       114.02        51.25        48.82 
TCGA-AR-A1AM TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AS TCGA-AR-A1AV 
       76.11        43.73        43.56        39.98        37.81        61.28 
TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A24H TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24N 
       63.62        62.14       160.90        94.22        96.89        78.51 
TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24Q TCGA-AR-A24R TCGA-AR-A24T TCGA-AR-A24V 
       84.20         2.76       104.28        87.22        76.01        85.35 
TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A255 TCGA-AR-A2LE 
       50.96        83.77        73.18        72.76        58.92       143.21 
TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LL TCGA-AR-A2LM TCGA-AR-A2LN 
       20.25        62.86        54.21        66.15        52.11        38.17 
TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A5QM TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ 
       39.39        40.54        54.74        16.04        20.45        10.59 
TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0I9 TCGA-B6-A0IA TCGA-B6-A0IC TCGA-B6-A0IH 
      143.38       149.59        12.13       220.90        50.70       112.37 
TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IO TCGA-B6-A0IP TCGA-B6-A0RE 
       18.77       126.12        84.59       110.14       110.93       211.56 
TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RL TCGA-B6-A0RM TCGA-B6-A0RN 
       68.45       189.01       234.28        81.17        78.02       172.96 
TCGA-B6-A0RO TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT 
      162.05       140.48        89.46       157.41        97.48       188.68 
TCGA-B6-A0WW TCGA-B6-A0WY TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X4 TCGA-B6-A0X5 
       18.35       113.79       129.57       129.70        28.27        68.94 
TCGA-B6-A0X7 TCGA-B6-A1KC TCGA-B6-A1KI TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A401 
       58.88        43.59        73.51       139.17       170.17        85.35 
TCGA-B6-A408 TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0AZ 
       68.12       103.63        71.15        20.45        25.55        28.50 
TCGA-BH-A0B0 TCGA-BH-A0B2 TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0B6 TCGA-BH-A0BA 
       46.95        40.83        39.16        48.36        56.94        37.22 
TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BF TCGA-BH-A0BJ TCGA-BH-A0BM TCGA-BH-A0BO 
       32.02        18.21        25.71        21.70        61.68        35.67 
TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BV TCGA-BH-A0BZ TCGA-BH-A0C1 
       27.19        53.69        53.95        49.94        49.05        44.02 
TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH 
       48.13        42.90        45.83        31.17        23.44        38.01 
TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DO TCGA-BH-A0DP TCGA-BH-A0DQ 
       22.13        13.91        48.23        17.26        15.65         3.22 
TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E1 
        2.56        38.47        67.86        47.41        16.27        15.68 
TCGA-BH-A0E2 TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EA TCGA-BH-A0EB TCGA-BH-A0EE 
       14.30        44.81        46.19        32.58        24.49        31.00 
TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 
       24.43        30.35        10.78        15.16        37.78        35.51 
TCGA-BH-A0H6 TCGA-BH-A0H7 TCGA-BH-A0H9 TCGA-BH-A0HB TCGA-BH-A0HI TCGA-BH-A0HK 
       24.56        23.08        41.00        26.50        20.38         5.85 
TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HX 
        2.50        13.61        36.85        12.89        51.32        27.25 
TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A18F 
        5.59        23.93        24.95        42.35        44.81         8.81 
TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18M 
        2.01         7.23        20.12        90.84        26.66        72.56 
TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18R TCGA-BH-A18S TCGA-BH-A18U 
       37.74        30.28        55.63        37.55        66.05        51.39 
TCGA-BH-A1EN TCGA-BH-A1EO TCGA-BH-A1ET TCGA-BH-A1EW TCGA-BH-A1EX TCGA-BH-A1EY 
       69.93        91.99        82.85        55.69        49.58        17.69 
TCGA-BH-A1F5 TCGA-BH-A1F6 TCGA-BH-A1F8 TCGA-BH-A1FB TCGA-BH-A1FH TCGA-BH-A1FJ 
       89.16        97.48        24.66       120.62        36.92        63.35 
TCGA-BH-A1FL TCGA-BH-A1FN TCGA-BH-A1FR TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A204 
       55.00        72.07       144.59        28.14        26.14        83.31 
TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V 
       10.65         6.44        20.12        10.52       109.28         8.94 
TCGA-BH-A5J0 TCGA-BH-A6R8 TCGA-BH-A6R9 TCGA-BH-A8FY TCGA-BH-A8FZ TCGA-BH-A8G0 
       23.51         9.63         5.26         9.70        18.87        21.76 
TCGA-BH-AB28 TCGA-C8-A12N TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12U TCGA-C8-A12V 
        9.44        11.77        11.77        12.66        12.66        12.66 
TCGA-C8-A12Z TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A137 TCGA-C8-A1HE TCGA-C8-A1HG 
        0.39         1.87         1.12         4.11        12.33        11.34 
TCGA-C8-A1HI TCGA-C8-A1HK TCGA-C8-A1HL TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A26V 
       11.28        12.03        10.42         2.30         3.25         0.30 
TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A275 TCGA-C8-A3M7 
        0.43         8.28         9.67         9.53         0.03         0.03 
TCGA-C8-A3M8 TCGA-C8-A8HP TCGA-C8-A8HQ TCGA-D8-A13Y TCGA-D8-A140 TCGA-D8-A141 
        0.23        13.02        12.49        11.90        13.25        20.58 
TCGA-D8-A145 TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JC TCGA-D8-A1JD TCGA-D8-A1JE 
       13.48        14.17        17.49        15.78        18.15        18.90 
TCGA-D8-A1JH TCGA-D8-A1JI TCGA-D8-A1JJ TCGA-D8-A1JN TCGA-D8-A1JS TCGA-D8-A1JT 
       14.01        18.97        20.09        20.38        12.20        13.32 
TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1X9 
       14.70        18.58        17.79        16.73        25.74        23.90 
TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XD TCGA-D8-A1XG TCGA-D8-A1XM TCGA-D8-A1XO 
       18.15        12.39        17.16        14.73        17.69        15.55 
TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XU TCGA-D8-A1XV TCGA-D8-A1XY TCGA-D8-A1Y0 
       15.85        16.31        12.99        15.16        16.54        15.52 
TCGA-D8-A1Y1 TCGA-D8-A1Y2 TCGA-D8-A27E TCGA-D8-A27G TCGA-D8-A27I TCGA-D8-A27K 
        9.93        14.24        17.42        13.45        14.43         9.44 
TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27T TCGA-D8-A27V 
       16.41        13.48         4.80         0.76        13.08        12.53 
TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-D8-A73U TCGA-D8-A73W 
       12.26        33.37        18.51        21.67        16.18         8.02 
TCGA-D8-A73X TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10A 
       12.10        43.00        34.42        27.52        46.59        40.41 
TCGA-E2-A10B TCGA-E2-A10C TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14O TCGA-E2-A14P 
       37.51        40.11        28.44        28.87        44.68        40.96 
TCGA-E2-A14Q TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14W 
       38.24        33.17        33.30        43.33        34.26        32.02 
TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A152 TCGA-E2-A153 TCGA-E2-A154 
       31.96        28.60        18.51        27.12        23.24        19.43 
TCGA-E2-A156 TCGA-E2-A15A TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15E TCGA-E2-A15F 
       23.87        23.34        22.82        17.29        20.71        21.63 
TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L 
       18.21        12.92        17.42        19.40         9.04        20.58 
TCGA-E2-A15M TCGA-E2-A15O TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A15T 
       11.05        13.02        19.56        17.06        14.07        14.99 
TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1BC TCGA-E2-A1BD TCGA-E2-A1IE 
       53.03        33.01        32.35        16.47        17.10        38.30 
TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1IH TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL 
       37.41        32.78        33.73        28.44        22.65         3.88 
TCGA-E2-A1IN TCGA-E2-A1IU TCGA-E2-A1L8 TCGA-E2-A1L9 TCGA-E2-A1LA TCGA-E2-A1LB 
       22.19        11.08        39.62        19.66        24.59        40.47 
TCGA-E2-A1LE TCGA-E2-A1LG TCGA-E2-A1LL TCGA-E2-A2P5 TCGA-E2-A2P6 TCGA-E2-A3DX 
       28.90        18.87        43.04        16.93         5.52        15.72 
TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A576 TCGA-E2-A9RU TCGA-E9-A1N3 TCGA-E9-A1N4 
        8.28        30.61        34.29        12.85        34.82        32.88 
TCGA-E9-A1N5 TCGA-E9-A1N6 TCGA-E9-A1N9 TCGA-E9-A1NA TCGA-E9-A1NE TCGA-E9-A1NF 
       36.82        13.48        13.12        36.56        35.77        35.24 
TCGA-E9-A1NG TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R3 
       25.84         9.86        11.90        28.27        34.95         2.56 
TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RA TCGA-E9-A1RD 
        6.12         3.02         2.76        21.21        32.09         1.12 
TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RG TCGA-E9-A1RI TCGA-E9-A226 TCGA-E9-A227 
       34.65         6.58        21.27        35.64        34.13        32.05 
TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22B TCGA-E9-A22H TCGA-E9-A248 TCGA-E9-A249 
       12.53        13.32        22.75        20.71         1.94         7.13 
TCGA-E9-A24A TCGA-E9-A295 TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3QA 
       24.56         0.72         0.76        26.07        18.41        30.18 
TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UO 
       15.72        12.33        23.84        14.70         0.79        13.81 
TCGA-E9-A5UP TCGA-E9-A6HE TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ 
       14.40        15.39        12.20        39.72         8.48        18.21 
TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J5 TCGA-EW-A1J6 TCGA-EW-A1OX TCGA-EW-A1OY 
       13.25        16.57        15.68        28.77        29.95        29.85 
TCGA-EW-A1OZ TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P3 TCGA-EW-A1P5 TCGA-EW-A1P6 
       40.41        41.13        39.78        52.96        23.11        18.48 
TCGA-EW-A1P7 TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PF 
       30.08        19.99         6.15        13.94        10.52        14.43 
TCGA-EW-A1PG TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A3U0 
       34.55        55.00        52.73        22.09        34.03        17.49 
TCGA-EW-A423 TCGA-EW-A424 TCGA-GI-A2C8 TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DB 
       10.16        23.51         7.40        59.57       216.76        79.10 
TCGA-GM-A2DC TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN 
       83.34        85.15        86.96       115.69       106.06       101.62 
TCGA-GM-A2DO TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XN TCGA-GM-A4E0 
       85.35       110.50        38.20        43.73        66.38        72.03 
TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2OB TCGA-JL-A3YX TCGA-LD-A66U TCGA-LD-A74U 
       13.55        18.12        62.43        11.57        21.24        13.22 
TCGA-LD-A7W5 TCGA-LD-A7W6 TCGA-LD-A9QF TCGA-LL-A440 TCGA-LL-A442 TCGA-LL-A50Y 
        7.10        13.28        10.62        24.95        10.95        25.05 
TCGA-LL-A5YL TCGA-LL-A5YO TCGA-LL-A6FP TCGA-LL-A6FQ TCGA-LL-A73Y TCGA-LL-A73Z 
       17.06        14.47        22.26         2.63        15.68         7.46 
TCGA-LL-A740 TCGA-LL-A9Q3 TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D6 
       14.50        14.07        27.91        22.39         2.10        36.30 
TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RU TCGA-OL-A5RV TCGA-OL-A5RX TCGA-OL-A5RY 
       31.99        58.62        40.08        34.92        28.87        24.72 
TCGA-OL-A66H TCGA-OL-A66K TCGA-OL-A66L TCGA-OL-A66N TCGA-OL-A66O TCGA-OL-A66P 
       26.70        41.92        42.77        26.04        17.36        14.07 
TCGA-OL-A6VQ TCGA-OL-A6VR TCGA-OL-A97C TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE 
       19.73        40.11         8.91        47.01        64.21        86.96 
TCGA-PL-A8LY TCGA-S3-A6ZF TCGA-S3-A6ZG TCGA-S3-A6ZH TCGA-S3-AA0Z TCGA-S3-AA11 
        0.26        16.50        13.12        16.93        16.80        13.84 
TCGA-S3-AA12 TCGA-S3-AA14 TCGA-S3-AA15 TCGA-S3-AA17 TCGA-UL-AAZ6 TCGA-UU-A93S 
       15.35        14.96        13.84        13.94        17.03         3.81 
TCGA-W8-A86G TCGA-WT-AB44 TCGA-XX-A899 TCGA-XX-A89A TCGA-Z7-A8R5 TCGA-Z7-A8R6 
       11.41        29.03        15.35        16.04       108.07       107.05 

  DEL PEAK  7(5Q11.2) MUTATED DEL PEAK  7(5Q11.2) WILD-TYPE 
                         0.16                          0.03 
  DEL PEAK  7(5Q11.2) MUTATED DEL PEAK  7(5Q11.2) WILD-TYPE 
                       186.48                        234.28 
  DEL PEAK  7(5Q11.2) MUTATED DEL PEAK  7(5Q11.2) WILD-TYPE 
                        24.82                         24.41 
[1] "0.2 - 186.5 (24.8)" "0.0 - 234.3 (24.4)"
[1] "hr=" "1.2"
D36V2, continuous
                               vv
clus                            STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  DEL PEAK  7(5Q11.2) MUTATED        24       13        1        0       102
  DEL PEAK  7(5Q11.2) WILD-TYPE      65       68        7        3       251
                               vv
clus                            STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  DEL PEAK  7(5Q11.2) MUTATED          68         0         34          7
  DEL PEAK  7(5Q11.2) WILD-TYPE       177         2        116         22
                               vv
clus                            STAGE IIIC STAGE IV STAGE TIS STAGE X
  DEL PEAK  7(5Q11.2) MUTATED           12        7         1       2
  DEL PEAK  7(5Q11.2) WILD-TYPE         51       13         0      11
D36V3, multiclass
            clus
vv           DEL PEAK  7(5Q11.2) MUTATED DEL PEAK  7(5Q11.2) WILD-TYPE
  STAGE I                             24                            65
  STAGE IA                            13                            68
  STAGE IB                             1                             7
  STAGE II                             0                             3
  STAGE IIA                          102                           251
  STAGE IIB                           68                           177
  STAGE III                            0                             2
  STAGE IIIA                          34                           116
  STAGE IIIB                           7                            22
  STAGE IIIC                          12                            51
  STAGE IV                             7                            13
  STAGE TIS                            1                             0
  STAGE X                              2                            11
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                             T1  T2  T3  T4
  DEL PEAK  7(5Q11.2) MUTATED    58 184  19  12
  DEL PEAK  7(5Q11.2) WILD-TYPE 214 432 111  28
D36V4, multiclass
    clus
vv   DEL PEAK  7(5Q11.2) MUTATED DEL PEAK  7(5Q11.2) WILD-TYPE
  T1                          58                           214
  T2                         184                           432
  T3                          19                           111
  T4                          12                            28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                             N0  N1  N2  N3
  DEL PEAK  7(5Q11.2) MUTATED   135  90  32  13
  DEL PEAK  7(5Q11.2) WILD-TYPE 366 260  85  62
D36V5, multiclass
    clus
vv   DEL PEAK  7(5Q11.2) MUTATED DEL PEAK  7(5Q11.2) WILD-TYPE
  N0                         135                           366
  N1                          90                           260
  N2                          32                            85
  N3                          13                            62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D36V6, binary
                               cls
clus                              0   1
  DEL PEAK  7(5Q11.2) MUTATED   237   7
  DEL PEAK  7(5Q11.2) WILD-TYPE 642  14
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  7(5Q11.2) MUTATED    237    7
  DEL PEAK  7(5Q11.2) WILD-TYPE  642   14
   clus
vv  DEL PEAK  7(5Q11.2) MUTATED DEL PEAK  7(5Q11.2) WILD-TYPE
  0                         237                           642
  1                           7                            14
[1] 2 2
[1] FALSE
D36V7, binary
                               cls
clus                              0   1
  DEL PEAK  7(5Q11.2) MUTATED   274   0
  DEL PEAK  7(5Q11.2) WILD-TYPE 777  11
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  7(5Q11.2) MUTATED    274    0
  DEL PEAK  7(5Q11.2) WILD-TYPE  777   11
        clus
vv       DEL PEAK  7(5Q11.2) MUTATED DEL PEAK  7(5Q11.2) WILD-TYPE
  FEMALE                         274                           777
  MALE                             0                            11
[1] 2 2
[1] FALSE
                               vv
clus                            INFILTRATING CARCINOMA NOS
  DEL PEAK  7(5Q11.2) MUTATED                            1
  DEL PEAK  7(5Q11.2) WILD-TYPE                          0
                               vv
clus                            INFILTRATING DUCTAL CARCINOMA
  DEL PEAK  7(5Q11.2) MUTATED                             239
  DEL PEAK  7(5Q11.2) WILD-TYPE                           524
                               vv
clus                            INFILTRATING LOBULAR CARCINOMA
  DEL PEAK  7(5Q11.2) MUTATED                               11
  DEL PEAK  7(5Q11.2) WILD-TYPE                            181
                               vv
clus                            MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  DEL PEAK  7(5Q11.2) MUTATED                     5                     0
  DEL PEAK  7(5Q11.2) WILD-TYPE                   1                     4
                               vv
clus                            MIXED HISTOLOGY (PLEASE SPECIFY)
  DEL PEAK  7(5Q11.2) MUTATED                                  5
  DEL PEAK  7(5Q11.2) WILD-TYPE                               25
                               vv
clus                            MUCINOUS CARCINOMA OTHER  SPECIFY
  DEL PEAK  7(5Q11.2) MUTATED                    1             11
  DEL PEAK  7(5Q11.2) WILD-TYPE                 16             37
D36V8, multiclass
                                  clus
vv                                 DEL PEAK  7(5Q11.2) MUTATED
  INFILTRATING CARCINOMA NOS                                 1
  INFILTRATING DUCTAL CARCINOMA                            239
  INFILTRATING LOBULAR CARCINOMA                            11
  MEDULLARY CARCINOMA                                        5
  METAPLASTIC CARCINOMA                                      0
  MIXED HISTOLOGY (PLEASE SPECIFY)                           5
  MUCINOUS CARCINOMA                                         1
  OTHER  SPECIFY                                            11
                                  clus
vv                                 DEL PEAK  7(5Q11.2) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                   0
  INFILTRATING DUCTAL CARCINOMA                              524
  INFILTRATING LOBULAR CARCINOMA                             181
  MEDULLARY CARCINOMA                                          1
  METAPLASTIC CARCINOMA                                        4
  MIXED HISTOLOGY (PLEASE SPECIFY)                            25
  MUCINOUS CARCINOMA                                          16
  OTHER  SPECIFY                                              37
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D36V9, binary
                               cls
clus                              0   1
  DEL PEAK  7(5Q11.2) MUTATED    78 196
  DEL PEAK  7(5Q11.2) WILD-TYPE 210 578
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  7(5Q11.2) MUTATED     78  196
  DEL PEAK  7(5Q11.2) WILD-TYPE  210  578
     clus
vv    DEL PEAK  7(5Q11.2) MUTATED DEL PEAK  7(5Q11.2) WILD-TYPE
  NO                           78                           210
  YES                         196                           578
[1] 2 2
[1] FALSE
D36V10, continuous
                               vv
clus                            AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK  7(5Q11.2) MUTATED                                  1    20
  DEL PEAK  7(5Q11.2) WILD-TYPE                                0    40
                               vv
clus                            BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK  7(5Q11.2) MUTATED                          62   170
  DEL PEAK  7(5Q11.2) WILD-TYPE                       108   566
D36V11, multiclass
                                  clus
vv                                 DEL PEAK  7(5Q11.2) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                           1
  ASIAN                                                     20
  BLACK OR AFRICAN AMERICAN                                 62
  WHITE                                                    170
                                  clus
vv                                 DEL PEAK  7(5Q11.2) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                             0
  ASIAN                                                       40
  BLACK OR AFRICAN AMERICAN                                  108
  WHITE                                                      566
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D36V12, binary
                               cls
clus                              0   1
  DEL PEAK  7(5Q11.2) MUTATED     9 228
  DEL PEAK  7(5Q11.2) WILD-TYPE  29 630
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  7(5Q11.2) MUTATED      9  228
  DEL PEAK  7(5Q11.2) WILD-TYPE   29  630
                        clus
vv                       DEL PEAK  7(5Q11.2) MUTATED
  HISPANIC OR LATINO                               9
  NOT HISPANIC OR LATINO                         228
                        clus
vv                       DEL PEAK  7(5Q11.2) WILD-TYPE
  HISPANIC OR LATINO                                29
  NOT HISPANIC OR LATINO                           630
[1] 2 2
[1] FALSE

Clustering(37) Variable = DEL PEAK  8(5Q21.3) MUTATION ANALYSIS
D37V1, survival
                               sevent
clus2                             0   1
  DEL PEAK  8(5Q21.3) MUTATED   226  35
  DEL PEAK  8(5Q21.3) WILD-TYPE 690  93
  DEL PEAK  8(5Q21.3) MUTATED DEL PEAK  8(5Q21.3) WILD-TYPE 
                          261                           783 
  DEL PEAK  8(5Q21.3) MUTATED DEL PEAK  8(5Q21.3) WILD-TYPE 
                           35                            93 
$`DEL PEAK  8(5Q21.3) MUTATED`
TCGA-3C-AALI TCGA-A1-A0SK TCGA-A1-A0SO TCGA-A1-A0SP TCGA-A2-A04P TCGA-A2-A04Q 
      131.67        31.79        28.01        19.20        18.02        78.41 
TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04W TCGA-A2-A0CM TCGA-A2-A0CX TCGA-A2-A0D0 
       73.84        87.25       101.98        24.79        56.81        67.33 
TCGA-A2-A0D1 TCGA-A2-A0EQ TCGA-A2-A0EY TCGA-A2-A0SX TCGA-A2-A0T0 TCGA-A2-A0YE 
       34.55        79.76        63.29        50.43        17.52        18.21 
TCGA-A2-A0YH TCGA-A2-A0YJ TCGA-A2-A0YM TCGA-A2-A1G1 TCGA-A2-A3XS TCGA-A2-A3XT 
       21.67        18.61        31.73        19.20        33.93        83.01 
TCGA-A2-A3XX TCGA-A2-A3XY TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4S3 TCGA-A7-A0CJ 
       47.31        34.98        38.37         7.30        21.90        30.61 
TCGA-A7-A0DA TCGA-A7-A13D TCGA-A7-A13E TCGA-A7-A26G TCGA-A7-A26I TCGA-A7-A2KD 
       35.67        31.73        20.19        23.74        21.73        22.32 
TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A56D TCGA-A7-A5ZV TCGA-A7-A6VV TCGA-A7-A6VW 
       14.50        21.17        14.73        12.10        10.29         9.37 
TCGA-A7-A6VY TCGA-A8-A06X TCGA-A8-A076 TCGA-A8-A07O TCGA-A8-A07R TCGA-A8-A07U 
        8.75        31.00        53.98         9.99         8.98        24.99 
TCGA-A8-A084 TCGA-A8-A08F TCGA-A8-A08L TCGA-A8-A08R TCGA-A8-A08X TCGA-A8-A09A 
       15.06        33.01         9.99         0.99        43.00         9.99 
TCGA-A8-A09C TCGA-A8-A09K TCGA-A8-A09M TCGA-A8-A09Q TCGA-AC-A2BK TCGA-AC-A3OD 
        1.02        29.98        33.07        25.02        38.53        14.83 
TCGA-AC-A62X TCGA-AC-A6IW TCGA-AC-A8OQ TCGA-AN-A041 TCGA-AN-A04C TCGA-AN-A0AK 
       13.71        13.58         1.12         0.23         1.78         7.36 
TCGA-AN-A0AL TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FJ TCGA-AN-A0FL 
        6.51         0.33         0.33         0.33         7.96         7.59 
TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FX TCGA-AN-A0FY TCGA-AN-A0FZ TCGA-AN-A0XN 
        7.04         0.33         0.33         0.33         0.33         0.33 
TCGA-AN-A0XU TCGA-AO-A03M TCGA-AO-A0J4 TCGA-AO-A0J5 TCGA-AO-A0J6 TCGA-AO-A0JB 
        0.33        61.35        52.18        26.04        37.48        50.70 
TCGA-AO-A0JL TCGA-AO-A124 TCGA-AO-A129 TCGA-AO-A12F TCGA-AO-A1KR TCGA-AQ-A04J 
       55.33       102.58       108.03        48.36        70.39        26.93 
TCGA-AQ-A04L TCGA-AQ-A54N TCGA-AR-A0TP TCGA-AR-A0TT TCGA-AR-A0TV TCGA-AR-A0TW 
      130.09         2.56       111.32        86.66        42.35        98.93 
TCGA-AR-A0TY TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A0U2 TCGA-AR-A0U4 TCGA-AR-A1AH 
       55.86        65.36       101.95        83.87        85.97        75.55 
TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AN TCGA-AR-A1AQ TCGA-AR-A1AR TCGA-AR-A1AY 
       61.84        52.77        43.73        43.07        17.23        33.73 
TCGA-AR-A24K TCGA-AR-A24L TCGA-AR-A24Q TCGA-AR-A24S TCGA-AR-A24U TCGA-AR-A24Z 
       50.89        94.22       104.28        97.84        53.36        79.00 
TCGA-AR-A250 TCGA-AR-A251 TCGA-AR-A256 TCGA-B6-A0IB TCGA-B6-A0IE TCGA-B6-A0IG 
       89.00        78.48        93.83       129.57        65.72       146.50 
TCGA-B6-A0IO TCGA-B6-A0RE TCGA-B6-A0RP TCGA-B6-A0RS TCGA-B6-A0RU TCGA-B6-A0WX 
      110.14       211.56       102.77       100.70       131.21        21.47 
TCGA-B6-A1KF TCGA-B6-A402 TCGA-BH-A0AU TCGA-BH-A0AV TCGA-BH-A0B3 TCGA-BH-A0B7 
      101.52        74.99        24.53        59.84        39.55        56.98 
TCGA-BH-A0B9 TCGA-BH-A0BF TCGA-BH-A0BG TCGA-BH-A0BL TCGA-BH-A0BP TCGA-BH-A0BT 
       51.68        25.71        24.85        44.05        48.69        45.57 
TCGA-BH-A0BW TCGA-BH-A0C0 TCGA-BH-A0E0 TCGA-BH-A0E6 TCGA-BH-A0HA TCGA-BH-A0HI 
       11.67        41.75         4.41         9.63        52.96        20.38 
TCGA-BH-A0HY TCGA-BH-A0WA TCGA-BH-A18T TCGA-BH-A18V TCGA-BH-A1EV TCGA-BH-A1F0 
       50.79        23.05         7.36        51.16        12.00        25.81 
TCGA-BH-A1F2 TCGA-BH-A1F6 TCGA-BH-A1FC TCGA-BH-A1FE TCGA-BH-A1FN TCGA-BH-A1FU 
       31.53        97.48       114.15        74.73        72.07        72.07 
TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A5IZ TCGA-C8-A12L TCGA-C8-A130 TCGA-C8-A131 
       57.83       130.16        18.64        11.93         3.16         2.24 
TCGA-C8-A134 TCGA-C8-A135 TCGA-C8-A1HF TCGA-C8-A1HJ TCGA-C8-A1HM TCGA-C8-A26W 
        1.12         1.05        10.92         0.16         2.30         0.23 
TCGA-C8-A26X TCGA-C8-A26Y TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A8HR 
        0.36         0.43         9.50        12.20         0.99        13.41 
TCGA-C8-A9FZ TCGA-D8-A142 TCGA-D8-A146 TCGA-D8-A147 TCGA-D8-A1JB TCGA-D8-A1JF 
       19.46        13.97        21.14        19.20        18.71        12.03 
TCGA-D8-A1JG TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1X9 TCGA-D8-A1XA 
       12.03        20.12        20.09        19.40        23.90        27.58 
TCGA-D8-A1XF TCGA-D8-A1XK TCGA-D8-A1XL TCGA-D8-A1XQ TCGA-D8-A1XT TCGA-D8-A1XW 
       15.22        14.50        19.92        16.41         6.35        12.66 
TCGA-D8-A1Y3 TCGA-D8-A27F TCGA-D8-A27H TCGA-D8-A27M TCGA-E2-A10C TCGA-E2-A14N 
       14.14        16.04        13.05        13.48        40.11        47.15 
TCGA-E2-A14R TCGA-E2-A150 TCGA-E2-A155 TCGA-E2-A158 TCGA-E2-A159 TCGA-E2-A15A 
       38.60        25.41        21.04        14.79        25.05        23.34 
TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1II TCGA-E2-A1IO TCGA-E2-A1LA TCGA-E2-A1LH 
       60.53        53.62        33.70        20.98        24.59       106.75 
TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A1LL TCGA-E2-A573 TCGA-E2-A574 TCGA-E9-A1N8 
      102.61         8.75        43.04        34.92        26.56        12.00 
TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RH TCGA-E9-A22A 
       39.55        12.59        32.09        40.24        34.59        39.09 
TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A244 TCGA-E9-A247 TCGA-E9-A3QA 
       41.03        12.89        23.51         0.69        27.22        30.18 
TCGA-E9-A5FL TCGA-EW-A1OV TCGA-EW-A1OW TCGA-EW-A1P4 TCGA-EW-A1P8 TCGA-EW-A1PA 
        0.79        25.94        22.82        29.82         7.86        18.90 
TCGA-EW-A1PH TCGA-EW-A2FV TCGA-GI-A2C9 TCGA-GM-A2DD TCGA-GM-A2DF TCGA-GM-A2DH 
       19.96        25.91       109.87        75.02        70.85        72.10 
TCGA-GM-A3XL TCGA-HN-A2NL TCGA-JL-A3YW TCGA-LL-A441 TCGA-LL-A5YM TCGA-LL-A5YN 
       69.30         2.60        11.84        11.44        15.32        14.70 
TCGA-LL-A5YP TCGA-LL-A6FR TCGA-LL-A7T0 TCGA-LL-A8F5 TCGA-OL-A5D7 TCGA-OL-A5RZ 
       14.79        16.08        12.36        14.73        58.52        22.32 
TCGA-OL-A5S0 TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A6VO TCGA-PL-A8LX TCGA-PL-A8LZ 
       20.38        23.47        65.62        28.21         0.16         9.93 
TCGA-S3-AA10 TCGA-S3-AA17 TCGA-WT-AB41 
       15.39        13.94        52.96 

$`DEL PEAK  8(5Q21.3) WILD-TYPE`
TCGA-3C-AAAU TCGA-3C-AALJ TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT0 TCGA-5L-AAT1 
      129.14        42.81        40.14        11.44        48.56        48.36 
TCGA-5T-A9QA TCGA-A1-A0SB TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG 
        9.96         8.52        14.37        43.43        48.10        14.27 
TCGA-A1-A0SH TCGA-A1-A0SI TCGA-A1-A0SJ TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SQ 
       47.24        20.88        13.68         7.96        39.32        18.21 
TCGA-A2-A04N TCGA-A2-A04R TCGA-A2-A04V TCGA-A2-A04X TCGA-A2-A04Y TCGA-A2-A0CK 
      104.81       121.94        63.12        55.43        36.13       136.73 
TCGA-A2-A0CL TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CQ TCGA-A2-A0CR TCGA-A2-A0CS 
       99.12       114.81        92.48        88.60       107.93        75.55 
TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0D2 TCGA-A2-A0D3 
       75.25         5.19        98.99       107.93        33.76        61.58 
TCGA-A2-A0D4 TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0ER 
       25.22       101.72       134.40        80.28       107.61        74.40 
TCGA-A2-A0ES TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX 
       72.00        35.05        34.29        31.82        61.94        24.72 
TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0SY TCGA-A2-A0T1 
       99.19        54.64        27.12        44.88        44.28        17.13 
TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T4 TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0T7 
        8.38        49.84        20.52        17.46        18.90        20.75 
TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YF TCGA-A2-A0YG TCGA-A2-A0YI TCGA-A2-A0YK 
       32.55        25.28        50.47        21.90        49.48        19.33 
TCGA-A2-A0YL TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1FX TCGA-A2-A1FZ 
       48.46        23.77        23.47        17.36        60.72        22.45 
TCGA-A2-A1G0 TCGA-A2-A1G4 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25A TCGA-A2-A25B 
       20.25        19.56        16.47        52.47       107.70        42.44 
TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD 
       17.19        18.15       105.34        10.59        20.88        39.65 
TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XZ TCGA-A2-A4RX TCGA-A2-A4RY 
       29.98        32.75        49.48        50.37        24.39        21.30 
TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A7-A0CD TCGA-A7-A0CE TCGA-A7-A0CG 
       23.21        26.96        21.14        38.30        35.31        34.29 
TCGA-A7-A0CH TCGA-A7-A0D9 TCGA-A7-A0DB TCGA-A7-A0DC TCGA-A7-A13F TCGA-A7-A13G 
       35.47        37.45        33.11        29.79        25.15        23.61 
TCGA-A7-A13H TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26H TCGA-A7-A26J TCGA-A7-A3IY 
       29.56        31.36        24.26        23.80        20.61        11.34 
TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3J1 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A426 
       10.59        10.29        11.28        13.41        14.70        11.97 
TCGA-A7-A4SA TCGA-A7-A4SB TCGA-A7-A4SF TCGA-A7-A5ZW TCGA-A7-A5ZX TCGA-A7-A6VX 
       14.93        13.74        17.92        10.72        11.05        10.42 
TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06R TCGA-A8-A06T TCGA-A8-A06U 
       13.02        13.02         1.02        17.98        53.06        29.03 
TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A079 TCGA-A8-A07B TCGA-A8-A07E 
       26.01         1.02        17.03         9.01        43.00        19.99 
TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07L TCGA-A8-A07P 
       18.97        18.97        14.01        12.00        32.05        10.98 
TCGA-A8-A07S TCGA-A8-A07W TCGA-A8-A07Z TCGA-A8-A082 TCGA-A8-A085 TCGA-A8-A086 
        7.99         9.99        45.07        18.05        36.95        13.02 
TCGA-A8-A08A TCGA-A8-A08B TCGA-A8-A08C TCGA-A8-A08G TCGA-A8-A08I TCGA-A8-A08J 
        0.99        38.01        28.96        19.96        12.00        37.05 
TCGA-A8-A08O TCGA-A8-A08P TCGA-A8-A08S TCGA-A8-A08T TCGA-A8-A08Z TCGA-A8-A091 
       31.00        31.00        33.01       112.08        40.01        33.01 
TCGA-A8-A092 TCGA-A8-A093 TCGA-A8-A095 TCGA-A8-A097 TCGA-A8-A099 TCGA-A8-A09B 
       30.97        17.95        41.98        12.00         9.99        12.00 
TCGA-A8-A09D TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09N TCGA-A8-A09R TCGA-A8-A09T 
       50.04        49.05        45.07         1.02         8.98        19.04 
TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 
       15.02         0.99        14.01        12.00        19.04        13.02 
TCGA-A8-A0A6 TCGA-A8-A0A7 TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C 
       21.04         0.99        27.02        17.03        38.04         0.95 
TCGA-AC-A23E TCGA-AC-A23G TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2BM TCGA-AC-A2FB 
        2.37        10.85         5.72         1.48        99.35        40.57 
TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A2QH 
       55.43        36.99        38.79        26.04        50.70        33.04 
TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3HN TCGA-AC-A3QP TCGA-AC-A3TN 
        0.92         2.27        32.45        16.31        22.19        14.99 
TCGA-AC-A3W5 TCGA-AC-A3W6 TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A5XS TCGA-AC-A62V 
       16.57        19.79        23.24        24.79         1.55        11.44 
TCGA-AC-A62Y TCGA-AC-A6IV TCGA-AC-A6IX TCGA-AC-A6NO TCGA-AC-A7VB TCGA-AC-A7VC 
       17.42        18.67        12.26         1.68         8.22         0.03 
TCGA-AC-A8OP TCGA-AC-A8OR TCGA-AC-A8OS TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A046 
       20.19         1.32         2.30         0.33         0.33         0.33 
TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AM TCGA-AN-A0FD 
        0.62         2.96         1.71         9.96         0.16         6.44 
TCGA-AN-A0FF TCGA-AN-A0FK TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FW TCGA-AN-A0XL 
        5.65         7.00         7.17         6.28         0.36         0.33 
TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XV 
       12.33         0.30         0.33         0.33         0.33         5.33 
TCGA-AN-A0XW TCGA-AO-A03L TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03R 
        5.59        80.28        66.77        81.63        95.70        68.75 
TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J7 
       47.87        58.95        29.13        32.78        21.40        20.32 
TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JC TCGA-AO-A0JD TCGA-AO-A0JE 
       22.36        53.03        21.53        50.86        72.00        76.77 
TCGA-AO-A0JF TCGA-AO-A0JG TCGA-AO-A0JI TCGA-AO-A0JJ TCGA-AO-A0JM TCGA-AO-A125 
       21.37        26.24        50.24        62.04        71.80        99.25 
TCGA-AO-A126 TCGA-AO-A128 TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A12E 
      108.72       106.78        90.58        98.27        64.04        57.30 
TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KQ TCGA-AO-A1KS 
       41.62        28.37        14.73        82.62        61.87         0.53 
TCGA-AO-A1KT TCGA-AQ-A04H TCGA-AQ-A0Y5 TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AQ-A54O 
       17.79        24.79         5.65        15.62        32.52        32.91 
TCGA-AQ-A7U7 TCGA-AR-A0TQ TCGA-AR-A0TR TCGA-AR-A0TS TCGA-AR-A0TX TCGA-AR-A0TZ 
       19.20        73.64         5.26        74.79        64.83       107.24 
TCGA-AR-A0U3 TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AM TCGA-AR-A1AO TCGA-AR-A1AP 
      114.02        51.25        48.82        76.11        43.56        39.98 
TCGA-AR-A1AS TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A24H 
       37.81        76.21        61.28        63.62        62.14       160.90 
TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24R TCGA-AR-A24T 
       96.89        78.51        84.20         2.76        87.22        76.01 
TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A255 
       85.35        50.96        83.77        73.18        72.76        58.92 
TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LL TCGA-AR-A2LM 
      143.21        20.25        62.86        54.21        66.15        52.11 
TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A2LR TCGA-AR-A5QM TCGA-AR-A5QN 
       38.17        39.39        40.54        20.38        54.74        16.04 
TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0I9 
       20.45        10.59        77.62       143.38       149.59        12.13 
TCGA-B6-A0IA TCGA-B6-A0IC TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0IM 
      220.90        50.70       112.37       176.98        18.77       126.12 
TCGA-B6-A0IN TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RI 
       84.59       110.93       140.88        68.45       189.01       234.28 
TCGA-B6-A0RL TCGA-B6-A0RM TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RQ TCGA-B6-A0RT 
       81.17        78.02       172.96       162.05       140.48        89.46 
TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0WY 
      157.41        97.48       188.68        79.63        18.35       113.79 
TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 
      129.57       129.70       186.48        28.27        68.94        58.88 
TCGA-B6-A1KC TCGA-B6-A1KI TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A401 TCGA-B6-A408 
       43.59        73.51       139.17       170.17        85.35        68.12 
TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0AZ TCGA-BH-A0B0 
      103.63        71.15        20.45        25.55        28.50        46.95 
TCGA-BH-A0B2 TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0B6 TCGA-BH-A0BA TCGA-BH-A0BC 
       40.83        39.16        48.36        56.94        37.22        32.02 
TCGA-BH-A0BD TCGA-BH-A0BJ TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BQ TCGA-BH-A0BR 
       18.21        21.70        61.68        35.67        27.19        53.69 
TCGA-BH-A0BS TCGA-BH-A0BV TCGA-BH-A0BZ TCGA-BH-A0C1 TCGA-BH-A0C3 TCGA-BH-A0C7 
       53.95        49.94        49.05        44.02        48.13        42.90 
TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DK 
       45.83        31.17        23.44        38.01        22.13        13.91 
TCGA-BH-A0DL TCGA-BH-A0DO TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DT 
       48.23        17.26        15.65         3.22         2.56        38.47 
TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E7 
       67.86        47.41        16.27        15.68        14.30        44.81 
TCGA-BH-A0E9 TCGA-BH-A0EA TCGA-BH-A0EB TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0GY 
       46.19        32.58        24.49        31.00        24.43        30.35 
TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H7 
       10.78        15.16        37.78        35.51        24.56        23.08 
TCGA-BH-A0H9 TCGA-BH-A0HB TCGA-BH-A0HK TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ 
       41.00        26.50         5.85         2.50        13.61        36.85 
TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 
       12.89        51.32        27.25         5.59        23.93        24.95 
TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J 
       42.35        44.81         8.81         2.01         7.23        20.12 
TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18Q 
       90.84        26.66        72.56        37.74        30.28        55.63 
TCGA-BH-A18R TCGA-BH-A18S TCGA-BH-A18U TCGA-BH-A1EN TCGA-BH-A1EO TCGA-BH-A1ES 
       37.55        66.05        51.39        69.93        91.99       113.82 
TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EW TCGA-BH-A1EX TCGA-BH-A1EY TCGA-BH-A1F5 
       82.85        42.28        55.69        49.58        17.69        89.16 
TCGA-BH-A1F8 TCGA-BH-A1FB TCGA-BH-A1FD TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ 
       24.66       120.62        33.17       122.89        36.92        63.35 
TCGA-BH-A1FL TCGA-BH-A1FM TCGA-BH-A1FR TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A203 
       55.00        45.63       144.59        28.14        26.14        38.60 
TCGA-BH-A204 TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U 
       83.31        10.65         6.44        20.12        10.52       109.28 
TCGA-BH-A42V TCGA-BH-A5J0 TCGA-BH-A6R8 TCGA-BH-A6R9 TCGA-BH-A8FY TCGA-BH-A8FZ 
        8.94        23.51         9.63         5.26         9.70        18.87 
TCGA-BH-A8G0 TCGA-BH-AB28 TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12P 
       21.76         9.44        11.77        11.77        12.66        11.77 
TCGA-C8-A12Q TCGA-C8-A12U TCGA-C8-A12V TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A12Z 
       12.66        12.66        12.66        12.66        12.66         0.39 
TCGA-C8-A132 TCGA-C8-A137 TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HG TCGA-C8-A1HI 
        1.87         4.11         4.08        12.33        11.34        11.28 
TCGA-C8-A1HK TCGA-C8-A1HL TCGA-C8-A1HN TCGA-C8-A26V TCGA-C8-A26Z TCGA-C8-A273 
       12.03        10.42         3.25         0.30         8.28         9.67 
TCGA-C8-A274 TCGA-C8-A275 TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-C8-A8HP TCGA-C8-A8HQ 
        9.53         0.03         0.03         0.23        13.02        12.49 
TCGA-D8-A13Y TCGA-D8-A13Z TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A143 TCGA-D8-A145 
       11.90        20.88        13.25        20.58        14.17        13.48 
TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JC TCGA-D8-A1JD TCGA-D8-A1JE 
       14.17        17.49        16.50        15.78        18.15        18.90 
TCGA-D8-A1JH TCGA-D8-A1JI TCGA-D8-A1JJ TCGA-D8-A1JN TCGA-D8-A1JP TCGA-D8-A1JS 
       14.01        18.97        20.09        20.38        21.01        12.20 
TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X7 TCGA-D8-A1X8 
       13.32        14.70        18.58        17.79        16.73        25.74 
TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XD TCGA-D8-A1XG TCGA-D8-A1XJ TCGA-D8-A1XM 
       18.15        12.39        17.16        14.73        21.83        17.69 
TCGA-D8-A1XO TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XU TCGA-D8-A1XV TCGA-D8-A1XY 
       15.55        15.85        16.31        12.99        15.16        16.54 
TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 TCGA-D8-A27E TCGA-D8-A27G 
       15.32        15.52         9.93        14.24        17.42        13.45 
TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27R 
       14.43         9.44        16.41         4.80         0.76        10.09 
TCGA-D8-A27T TCGA-D8-A27V TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 
       13.08        12.53        12.26        33.37        18.51        21.67 
TCGA-D8-A73U TCGA-D8-A73W TCGA-D8-A73X TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A108 
       16.18         8.02        12.10        43.00        34.42        27.52 
TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14O 
       46.59        40.41        37.51        28.44        28.87        44.68 
TCGA-E2-A14P TCGA-E2-A14Q TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V 
       40.96        38.24        33.17        33.30        43.33        34.26 
TCGA-E2-A14W TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A152 TCGA-E2-A153 
       32.02        31.96        28.60        18.51        27.12        23.24 
TCGA-E2-A154 TCGA-E2-A156 TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15E TCGA-E2-A15F 
       19.43        23.87        22.82        17.29        20.71        21.63 
TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L 
       18.21        12.92        17.42        19.40         9.04        20.58 
TCGA-E2-A15M TCGA-E2-A15O TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A15T 
       11.05        13.02        19.56        17.06        14.07        14.99 
TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BC TCGA-E2-A1BD 
       53.03        33.01        32.35        28.50        16.47        17.10 
TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1IH TCGA-E2-A1IJ TCGA-E2-A1IK 
       38.30        37.41        32.78        33.73        28.44        22.65 
TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L8 
        3.88        22.19        11.08        54.18        27.42        39.62 
TCGA-E2-A1L9 TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LG TCGA-E2-A2P5 TCGA-E2-A2P6 
       19.66        40.47        28.90        18.87        16.93         5.52 
TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A576 TCGA-E2-A9RU TCGA-E9-A1N3 
       15.72         8.28        30.61        34.29        12.85        34.82 
TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N6 TCGA-E9-A1N9 TCGA-E9-A1NA TCGA-E9-A1NE 
       32.88        36.82        13.48        13.12        36.56        35.77 
TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 
       35.24        25.84         9.86        11.90        28.27        34.95 
TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RA 
        2.56         6.12         3.02         2.76        21.21        32.09 
TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RG TCGA-E9-A1RI TCGA-E9-A226 
        1.12        34.65         6.58        21.27        35.64        34.13 
TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22B TCGA-E9-A22H TCGA-E9-A243 
       32.05        12.53        13.32        22.75        20.71        17.06 
TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A2JT 
        1.94         7.13        24.56         0.72        29.72         0.76 
TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A54Y TCGA-E9-A5FK 
       26.07        18.41        15.72        12.33        23.84        14.70 
TCGA-E9-A5UO TCGA-E9-A5UP TCGA-E9-A6HE TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY 
       13.81        14.40        15.39        12.20        39.72         8.48 
TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J5 TCGA-EW-A1J6 
       18.21        18.90        13.25        16.57        15.68        28.77 
TCGA-EW-A1OX TCGA-EW-A1OY TCGA-EW-A1OZ TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P3 
       29.95        29.85        40.41        41.13        39.78        52.96 
TCGA-EW-A1P5 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A1PD 
       23.11        18.48        30.08        19.99         6.15        13.94 
TCGA-EW-A1PE TCGA-EW-A1PF TCGA-EW-A1PG TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FW 
       10.52        14.43        34.55        55.00        52.73        22.09 
TCGA-EW-A3E8 TCGA-EW-A3U0 TCGA-EW-A423 TCGA-EW-A424 TCGA-GI-A2C8 TCGA-GM-A2D9 
       34.03        17.49        10.16        23.51         7.40        59.57 
TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DC TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL 
      216.76        79.10        83.34        85.15        86.96       115.69 
TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A2DO TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG 
      106.06       101.62        85.35       110.50        38.20        43.73 
TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2OB TCGA-JL-A3YX 
       66.38        72.03        13.55        18.12        62.43        11.57 
TCGA-LD-A66U TCGA-LD-A74U TCGA-LD-A7W5 TCGA-LD-A7W6 TCGA-LD-A9QF TCGA-LL-A440 
       21.24        13.22         7.10        13.28        10.62        24.95 
TCGA-LL-A442 TCGA-LL-A50Y TCGA-LL-A5YL TCGA-LL-A5YO TCGA-LL-A6FP TCGA-LL-A6FQ 
       10.95        25.05        17.06        14.47        22.26         2.63 
TCGA-LL-A73Y TCGA-LL-A73Z TCGA-LL-A740 TCGA-LL-A7SZ TCGA-LL-A9Q3 TCGA-LQ-A4E4 
       15.68         7.46        14.50        14.70        14.07        27.91 
TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RU 
       22.39         2.10        36.30        31.99        58.62        40.08 
TCGA-OL-A5RV TCGA-OL-A5RW TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A66H TCGA-OL-A66K 
       34.92        36.36        28.87        24.72        26.70        41.92 
TCGA-OL-A66L TCGA-OL-A66N TCGA-OL-A66O TCGA-OL-A66P TCGA-OL-A6VQ TCGA-OL-A6VR 
       42.77        26.04        17.36        14.07        19.73        40.11 
TCGA-OL-A97C TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE TCGA-PL-A8LY TCGA-S3-A6ZF 
        8.91        47.01        64.21        86.96         0.26        16.50 
TCGA-S3-A6ZG TCGA-S3-A6ZH TCGA-S3-AA0Z TCGA-S3-AA11 TCGA-S3-AA12 TCGA-S3-AA14 
       13.12        16.93        16.80        13.84        15.35        14.96 
TCGA-S3-AA15 TCGA-UL-AAZ6 TCGA-UU-A93S TCGA-W8-A86G TCGA-WT-AB44 TCGA-XX-A899 
       13.84        17.03         3.81        11.41        29.03        15.35 
TCGA-XX-A89A TCGA-Z7-A8R5 TCGA-Z7-A8R6 
       16.04       108.07       107.05 

  DEL PEAK  8(5Q21.3) MUTATED DEL PEAK  8(5Q21.3) WILD-TYPE 
                         0.16                          0.03 
  DEL PEAK  8(5Q21.3) MUTATED DEL PEAK  8(5Q21.3) WILD-TYPE 
                       211.56                        234.28 
  DEL PEAK  8(5Q21.3) MUTATED DEL PEAK  8(5Q21.3) WILD-TYPE 
                        25.02                         23.93 
[1] "0.2 - 211.6 (25.0)" "0.0 - 234.3 (23.9)"
[1] "hr=" "1.1"
D37V2, continuous
                               vv
clus                            STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  DEL PEAK  8(5Q21.3) MUTATED        20       15        1        0       107
  DEL PEAK  8(5Q21.3) WILD-TYPE      69       66        7        3       246
                               vv
clus                            STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  DEL PEAK  8(5Q21.3) MUTATED          65         0         28          7
  DEL PEAK  8(5Q21.3) WILD-TYPE       180         2        122         22
                               vv
clus                            STAGE IIIC STAGE IV STAGE TIS STAGE X
  DEL PEAK  8(5Q21.3) MUTATED           12        4         1       3
  DEL PEAK  8(5Q21.3) WILD-TYPE         51       16         0      10
D37V3, multiclass
            clus
vv           DEL PEAK  8(5Q21.3) MUTATED DEL PEAK  8(5Q21.3) WILD-TYPE
  STAGE I                             20                            69
  STAGE IA                            15                            66
  STAGE IB                             1                             7
  STAGE II                             0                             3
  STAGE IIA                          107                           246
  STAGE IIB                           65                           180
  STAGE III                            0                             2
  STAGE IIIA                          28                           122
  STAGE IIIB                           7                            22
  STAGE IIIC                          12                            51
  STAGE IV                             4                            16
  STAGE TIS                            1                             0
  STAGE X                              3                            10
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                             T1  T2  T3  T4
  DEL PEAK  8(5Q21.3) MUTATED    52 181  18  12
  DEL PEAK  8(5Q21.3) WILD-TYPE 220 435 112  28
D37V4, multiclass
    clus
vv   DEL PEAK  8(5Q21.3) MUTATED DEL PEAK  8(5Q21.3) WILD-TYPE
  T1                          52                           220
  T2                         181                           435
  T3                          18                           112
  T4                          12                            28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                             N0  N1  N2  N3
  DEL PEAK  8(5Q21.3) MUTATED   141  81  28  13
  DEL PEAK  8(5Q21.3) WILD-TYPE 360 269  89  62
D37V5, multiclass
    clus
vv   DEL PEAK  8(5Q21.3) MUTATED DEL PEAK  8(5Q21.3) WILD-TYPE
  N0                         141                           360
  N1                          81                           269
  N2                          28                            89
  N3                          13                            62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D37V6, binary
                               cls
clus                              0   1
  DEL PEAK  8(5Q21.3) MUTATED   230   4
  DEL PEAK  8(5Q21.3) WILD-TYPE 649  17
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  8(5Q21.3) MUTATED    230    4
  DEL PEAK  8(5Q21.3) WILD-TYPE  649   17
   clus
vv  DEL PEAK  8(5Q21.3) MUTATED DEL PEAK  8(5Q21.3) WILD-TYPE
  0                         230                           649
  1                           4                            17
[1] 2 2
[1] FALSE
D37V7, binary
                               cls
clus                              0   1
  DEL PEAK  8(5Q21.3) MUTATED   265   0
  DEL PEAK  8(5Q21.3) WILD-TYPE 786  11
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  8(5Q21.3) MUTATED    265    0
  DEL PEAK  8(5Q21.3) WILD-TYPE  786   11
        clus
vv       DEL PEAK  8(5Q21.3) MUTATED DEL PEAK  8(5Q21.3) WILD-TYPE
  FEMALE                         265                           786
  MALE                             0                            11
[1] 2 2
[1] FALSE
                               vv
clus                            INFILTRATING CARCINOMA NOS
  DEL PEAK  8(5Q21.3) MUTATED                            1
  DEL PEAK  8(5Q21.3) WILD-TYPE                          0
                               vv
clus                            INFILTRATING DUCTAL CARCINOMA
  DEL PEAK  8(5Q21.3) MUTATED                             237
  DEL PEAK  8(5Q21.3) WILD-TYPE                           526
                               vv
clus                            INFILTRATING LOBULAR CARCINOMA
  DEL PEAK  8(5Q21.3) MUTATED                                5
  DEL PEAK  8(5Q21.3) WILD-TYPE                            187
                               vv
clus                            MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  DEL PEAK  8(5Q21.3) MUTATED                     6                     1
  DEL PEAK  8(5Q21.3) WILD-TYPE                   0                     3
                               vv
clus                            MIXED HISTOLOGY (PLEASE SPECIFY)
  DEL PEAK  8(5Q21.3) MUTATED                                  5
  DEL PEAK  8(5Q21.3) WILD-TYPE                               25
                               vv
clus                            MUCINOUS CARCINOMA OTHER  SPECIFY
  DEL PEAK  8(5Q21.3) MUTATED                    0              9
  DEL PEAK  8(5Q21.3) WILD-TYPE                 17             39
D37V8, multiclass
                                  clus
vv                                 DEL PEAK  8(5Q21.3) MUTATED
  INFILTRATING CARCINOMA NOS                                 1
  INFILTRATING DUCTAL CARCINOMA                            237
  INFILTRATING LOBULAR CARCINOMA                             5
  MEDULLARY CARCINOMA                                        6
  METAPLASTIC CARCINOMA                                      1
  MIXED HISTOLOGY (PLEASE SPECIFY)                           5
  MUCINOUS CARCINOMA                                         0
  OTHER  SPECIFY                                             9
                                  clus
vv                                 DEL PEAK  8(5Q21.3) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                   0
  INFILTRATING DUCTAL CARCINOMA                              526
  INFILTRATING LOBULAR CARCINOMA                             187
  MEDULLARY CARCINOMA                                          0
  METAPLASTIC CARCINOMA                                        3
  MIXED HISTOLOGY (PLEASE SPECIFY)                            25
  MUCINOUS CARCINOMA                                          17
  OTHER  SPECIFY                                              39
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D37V9, binary
                               cls
clus                              0   1
  DEL PEAK  8(5Q21.3) MUTATED    80 185
  DEL PEAK  8(5Q21.3) WILD-TYPE 208 589
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  8(5Q21.3) MUTATED     80  185
  DEL PEAK  8(5Q21.3) WILD-TYPE  208  589
     clus
vv    DEL PEAK  8(5Q21.3) MUTATED DEL PEAK  8(5Q21.3) WILD-TYPE
  NO                           80                           208
  YES                         185                           589
[1] 2 2
[1] FALSE
D37V10, continuous
                               vv
clus                            AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK  8(5Q21.3) MUTATED                                  0    18
  DEL PEAK  8(5Q21.3) WILD-TYPE                                1    42
                               vv
clus                            BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK  8(5Q21.3) MUTATED                          63   163
  DEL PEAK  8(5Q21.3) WILD-TYPE                       107   573
D37V11, multiclass
                                  clus
vv                                 DEL PEAK  8(5Q21.3) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                           0
  ASIAN                                                     18
  BLACK OR AFRICAN AMERICAN                                 63
  WHITE                                                    163
                                  clus
vv                                 DEL PEAK  8(5Q21.3) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                             1
  ASIAN                                                       42
  BLACK OR AFRICAN AMERICAN                                  107
  WHITE                                                      573
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D37V12, binary
                               cls
clus                              0   1
  DEL PEAK  8(5Q21.3) MUTATED     8 219
  DEL PEAK  8(5Q21.3) WILD-TYPE  30 639
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  8(5Q21.3) MUTATED      8  219
  DEL PEAK  8(5Q21.3) WILD-TYPE   30  639
                        clus
vv                       DEL PEAK  8(5Q21.3) MUTATED
  HISPANIC OR LATINO                               8
  NOT HISPANIC OR LATINO                         219
                        clus
vv                       DEL PEAK  8(5Q21.3) WILD-TYPE
  HISPANIC OR LATINO                                30
  NOT HISPANIC OR LATINO                           639
[1] 2 2
[1] FALSE

Clustering(38) Variable = DEL PEAK  9(6P25.3) MUTATION ANALYSIS
D38V1, survival
                               sevent
clus2                             0   1
  DEL PEAK  9(6P25.3) MUTATED   175  25
  DEL PEAK  9(6P25.3) WILD-TYPE 741 103
  DEL PEAK  9(6P25.3) MUTATED DEL PEAK  9(6P25.3) WILD-TYPE 
                          200                           844 
  DEL PEAK  9(6P25.3) MUTATED DEL PEAK  9(6P25.3) WILD-TYPE 
                           25                           103 
$`DEL PEAK  9(6P25.3) MUTATED`
TCGA-3C-AALI TCGA-3C-AALJ TCGA-A1-A0SG TCGA-A1-A0SJ TCGA-A1-A0SK TCGA-A1-A0SP 
      131.67        42.81        14.27        13.68        31.79        19.20 
TCGA-A2-A04W TCGA-A2-A0CQ TCGA-A2-A0CS TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV 
      101.98        88.60        75.55        75.25         5.19        98.99 
TCGA-A2-A0D0 TCGA-A2-A0D4 TCGA-A2-A0EO TCGA-A2-A0SV TCGA-A2-A0T0 TCGA-A2-A0T3 
       67.33        25.22        80.28        27.12        17.52        49.84 
TCGA-A2-A0T4 TCGA-A2-A25E TCGA-A2-A3XS TCGA-A2-A3XW TCGA-A2-A4RW TCGA-A2-A4RY 
       20.52       105.34        33.93        49.48         7.30        21.30 
TCGA-A7-A0DA TCGA-A7-A2KD TCGA-A7-A4SE TCGA-A7-A5ZV TCGA-A7-A6VV TCGA-A8-A06O 
       35.67        22.32        21.17        12.10        10.29        13.02 
TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A079 TCGA-A8-A07J TCGA-A8-A082 TCGA-A8-A08G 
       26.01         1.02         9.01        12.00        18.05        19.96 
TCGA-A8-A08X TCGA-A8-A097 TCGA-A8-A09K TCGA-A8-A09M TCGA-A8-A09R TCGA-A8-A09T 
       43.00        12.00        29.98        33.07         8.98        19.04 
TCGA-A8-A0A6 TCGA-A8-A0A9 TCGA-AC-A23C TCGA-AC-A2BM TCGA-AC-A2FM TCGA-AC-A2QI 
       21.04        27.02         0.95        99.35        26.04         0.92 
TCGA-AC-A3BB TCGA-AC-A5XS TCGA-AC-A62V TCGA-AC-A62Y TCGA-AC-A6IW TCGA-AC-A8OP 
       32.45         1.55        11.44        17.42        13.58        20.19 
TCGA-AN-A04A TCGA-AN-A0FV TCGA-AN-A0FX TCGA-AN-A0XU TCGA-AN-A0XW TCGA-AO-A03L 
        2.96         0.33         0.33         0.33         5.59        80.28 
TCGA-AO-A03T TCGA-AO-A0J6 TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0JD TCGA-AO-A0JG 
       47.87        37.48        20.32        22.36        72.00        26.24 
TCGA-AO-A0JJ TCGA-AO-A1KR TCGA-AO-A1KT TCGA-AQ-A1H2 TCGA-AQ-A54N TCGA-AQ-A54O 
       62.04        70.39        17.79        15.62         2.56        32.91 
TCGA-AR-A0TQ TCGA-AR-A0U1 TCGA-AR-A1AP TCGA-AR-A1AQ TCGA-AR-A1AU TCGA-AR-A24H 
       73.64       101.95        39.98        43.07        76.21       160.90 
TCGA-AR-A24K TCGA-AR-A24L TCGA-AR-A24P TCGA-AR-A24R TCGA-AR-A24V TCGA-AR-A24Z 
       50.89        94.22         2.76        87.22        85.35        79.00 
TCGA-AR-A252 TCGA-AR-A256 TCGA-B6-A0I1 TCGA-B6-A0IA TCGA-B6-A0RN TCGA-B6-A0RO 
       73.18        93.83        77.62       220.90       172.96       162.05 
TCGA-B6-A0WV TCGA-B6-A0X1 TCGA-B6-A401 TCGA-BH-A0AU TCGA-BH-A0B0 TCGA-BH-A0B4 
       79.63       186.48        85.35        24.53        46.95        39.16 
TCGA-BH-A0B5 TCGA-BH-A0B9 TCGA-BH-A0BF TCGA-BH-A0C3 TCGA-BH-A0DL TCGA-BH-A0DP 
       48.36        51.68        25.71        48.13        48.23        15.65 
TCGA-BH-A0E2 TCGA-BH-A0HB TCGA-BH-A0W3 TCGA-BH-A0W7 TCGA-BH-A18T TCGA-BH-A18U 
       14.30        26.50        23.93        44.81         7.36        51.39 
TCGA-BH-A18V TCGA-BH-A1ES TCGA-BH-A1EU TCGA-BH-A1EY TCGA-BH-A1F5 TCGA-BH-A1FM 
       51.16       113.82        42.28        17.69        89.16        45.63 
TCGA-BH-A1FN TCGA-BH-A208 TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-BH-A8FZ TCGA-C8-A12O 
       72.07        57.83        18.64        23.51        18.87        12.66 
TCGA-C8-A1HG TCGA-C8-A1HK TCGA-C8-A26X TCGA-C8-A274 TCGA-C8-A27A TCGA-C8-A27B 
       11.34        12.03         0.36         9.53        12.20         0.99 
TCGA-C8-A3M8 TCGA-C8-A8HR TCGA-D8-A13Y TCGA-D8-A145 TCGA-D8-A147 TCGA-D8-A1JC 
        0.23        13.41        11.90        13.48        19.20        15.78 
TCGA-D8-A1JE TCGA-D8-A1JG TCGA-D8-A1JJ TCGA-D8-A1JM TCGA-D8-A1JP TCGA-D8-A1XA 
       18.90        12.03        20.09        19.40        21.01        27.58 
TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XU TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A27H 
       18.15        12.39        12.99        15.52         9.93        13.05 
TCGA-D8-A27M TCGA-D8-A73W TCGA-E2-A107 TCGA-E2-A109 TCGA-E2-A10C TCGA-E2-A14R 
       13.48         8.02        34.42        46.59        40.11        38.60 
TCGA-E2-A14W TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A153 TCGA-E2-A155 TCGA-E2-A15D 
       32.02        25.41        27.12        23.24        21.04        17.29 
TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15H TCGA-E2-A1AZ TCGA-E2-A1BD TCGA-E2-A1IG 
       20.71        21.63        12.92        60.53        17.10        32.78 
TCGA-E2-A1L7 TCGA-E2-A1L8 TCGA-E9-A1N6 TCGA-E9-A1NA TCGA-E9-A1NC TCGA-E9-A1ND 
       27.42        39.62        13.48        36.56        39.55        12.59 
TCGA-E9-A1NF TCGA-E9-A1QZ TCGA-E9-A1R6 TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RG 
       35.24        11.90         2.76        32.09        32.09        21.27 
TCGA-E9-A22E TCGA-E9-A249 TCGA-E9-A3QA TCGA-E9-A3X8 TCGA-E9-A5UO TCGA-E9-A5UP 
       12.89         7.13        30.18        15.72        13.81        14.40 
TCGA-EW-A1J1 TCGA-EW-A1OY TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-GI-A2C8 TCGA-GI-A2C9 
       18.90        29.85        29.82        23.11         7.40       109.87 
TCGA-GM-A2DC TCGA-GM-A2DH TCGA-GM-A3XL TCGA-JL-A3YW TCGA-LL-A6FR TCGA-LL-A740 
       83.34        72.10        69.30        11.84        16.08        14.50 
TCGA-LL-A8F5 TCGA-MS-A51U TCGA-OL-A5D6 TCGA-OL-A5DA TCGA-OL-A6VR TCGA-S3-A6ZG 
       14.73        22.39        36.30        58.62        40.11        13.12 
TCGA-S3-AA10 TCGA-S3-AA17 
       15.39        13.94 

$`DEL PEAK  9(6P25.3) WILD-TYPE`
TCGA-3C-AAAU TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT0 TCGA-5L-AAT1 TCGA-5T-A9QA 
      129.14        40.14        11.44        48.56        48.36         9.96 
TCGA-A1-A0SB TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SH TCGA-A1-A0SI 
        8.52        14.37        43.43        48.10        47.24        20.88 
TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SO TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04P 
        7.96        39.32        28.01        18.21       104.81        18.02 
TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04V TCGA-A2-A04X 
       78.41       121.94        73.84        87.25        63.12        55.43 
TCGA-A2-A04Y TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP 
       36.13       136.73        99.12        24.79       114.81        92.48 
TCGA-A2-A0CR TCGA-A2-A0CW TCGA-A2-A0CX TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 
      107.93       107.93        56.81        34.55        33.76        61.58 
TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EP TCGA-A2-A0EQ TCGA-A2-A0ER TCGA-A2-A0ES 
      101.72       134.40       107.61        79.76        74.40        72.00 
TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0EY 
       35.05        34.29        31.82        61.94        24.72        63.29 
TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SW TCGA-A2-A0SX TCGA-A2-A0SY TCGA-A2-A0T1 
       99.19        54.64        44.88        50.43        44.28        17.13 
TCGA-A2-A0T2 TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD 
        8.38        17.46        18.90        20.75        32.55        25.28 
TCGA-A2-A0YE TCGA-A2-A0YF TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YJ 
       18.21        50.47        21.90        21.67        49.48        18.61 
TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A0YM TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FW 
       19.33        48.46        31.73        23.77        23.47        17.36 
TCGA-A2-A1FX TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G1 TCGA-A2-A1G4 TCGA-A2-A1G6 
       60.72        22.45        20.25        19.20        19.56        16.47 
TCGA-A2-A259 TCGA-A2-A25A TCGA-A2-A25B TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25F 
       52.47       107.70        42.44        17.19        18.15        10.59 
TCGA-A2-A3KC TCGA-A2-A3KD TCGA-A2-A3XT TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XX 
       20.88        39.65        83.01        29.98        32.75        47.31 
TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A3Y0 TCGA-A2-A4RX TCGA-A2-A4S0 TCGA-A2-A4S1 
       34.98        50.37        38.37        24.39        23.21        26.96 
TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CD TCGA-A7-A0CE TCGA-A7-A0CG TCGA-A7-A0CH 
       21.14        21.90        38.30        35.31        34.29        35.47 
TCGA-A7-A0CJ TCGA-A7-A0D9 TCGA-A7-A0DB TCGA-A7-A0DC TCGA-A7-A13D TCGA-A7-A13E 
       30.61        37.45        33.11        29.79        31.73        20.19 
TCGA-A7-A13F TCGA-A7-A13G TCGA-A7-A13H TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26G 
       25.15        23.61        29.56        31.36        24.26        23.74 
TCGA-A7-A26H TCGA-A7-A26I TCGA-A7-A26J TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J0 
       23.80        21.73        20.61        11.34        10.59        10.29 
TCGA-A7-A3J1 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A426 TCGA-A7-A4SA TCGA-A7-A4SB 
       11.28        13.41        14.70        11.97        14.93        13.74 
TCGA-A7-A4SD TCGA-A7-A4SF TCGA-A7-A56D TCGA-A7-A5ZW TCGA-A7-A5ZX TCGA-A7-A6VW 
       14.50        17.92        14.73        10.72        11.05         9.37 
TCGA-A7-A6VX TCGA-A7-A6VY TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06R TCGA-A8-A06T 
       10.42         8.75        13.02         1.02        17.98        53.06 
TCGA-A8-A06U TCGA-A8-A06X TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A07B TCGA-A8-A07E 
       29.03        31.00        17.03        53.98        43.00        19.99 
TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07L TCGA-A8-A07O TCGA-A8-A07P 
       18.97        18.97        14.01        32.05         9.99        10.98 
TCGA-A8-A07R TCGA-A8-A07S TCGA-A8-A07U TCGA-A8-A07W TCGA-A8-A07Z TCGA-A8-A084 
        8.98         7.99        24.99         9.99        45.07        15.06 
TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08B TCGA-A8-A08C TCGA-A8-A08F 
       36.95        13.02         0.99        38.01        28.96        33.01 
TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08O TCGA-A8-A08P TCGA-A8-A08R 
       12.00        37.05         9.99        31.00        31.00         0.99 
TCGA-A8-A08S TCGA-A8-A08T TCGA-A8-A08Z TCGA-A8-A091 TCGA-A8-A092 TCGA-A8-A093 
       33.01       112.08        40.01        33.01        30.97        17.95 
TCGA-A8-A095 TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09C TCGA-A8-A09D 
       41.98         9.99         9.99        12.00         1.02        50.04 
TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09N TCGA-A8-A09Q TCGA-A8-A09V TCGA-A8-A09W 
       49.05        45.07         1.02        25.02        15.02         0.99 
TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A7 TCGA-A8-A0AB 
       14.01        12.00        19.04        13.02         0.99        17.03 
TCGA-A8-A0AD TCGA-AC-A23E TCGA-AC-A23G TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2BK 
       38.04         2.37        10.85         5.72         1.48        38.53 
TCGA-AC-A2FB TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FO TCGA-AC-A2QH 
       40.57        55.43        36.99        38.79        50.70        33.04 
TCGA-AC-A2QJ TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3TN TCGA-AC-A3W5 
        2.27        16.31        14.83        22.19        14.99        16.57 
TCGA-AC-A3W6 TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A62X TCGA-AC-A6IV TCGA-AC-A6IX 
       19.79        23.24        24.79        13.71        18.67        12.26 
TCGA-AC-A6NO TCGA-AC-A7VB TCGA-AC-A7VC TCGA-AC-A8OQ TCGA-AC-A8OR TCGA-AC-A8OS 
        1.68         8.22         0.03         1.12         1.32         2.30 
TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A041 TCGA-AN-A046 TCGA-AN-A049 TCGA-AN-A04C 
        0.33         0.33         0.23         0.33         0.62         1.78 
TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AK TCGA-AN-A0AL TCGA-AN-A0AM TCGA-AN-A0AR 
        1.71         9.96         7.36         6.51         0.16         0.33 
TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FK 
        0.33         0.33         6.44         5.65         7.96         7.00 
TCGA-AN-A0FL TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FW TCGA-AN-A0FY 
        7.59         7.17         6.28         7.04         0.36         0.33 
TCGA-AN-A0FZ TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XR 
        0.33         0.33         0.33        12.33         0.30         0.33 
TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XV TCGA-AO-A03M TCGA-AO-A03N TCGA-AO-A03O 
        0.33         0.33         5.33        61.35        66.77        81.63 
TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J2 TCGA-AO-A0J3 
       95.70        68.75        58.95        29.13        32.78        21.40 
TCGA-AO-A0J4 TCGA-AO-A0J5 TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JC 
       52.18        26.04        53.03        21.53        50.70        50.86 
TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JI TCGA-AO-A0JL TCGA-AO-A0JM TCGA-AO-A124 
       76.77        21.37        50.24        55.33        71.80       102.58 
TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 TCGA-AO-A129 TCGA-AO-A12A TCGA-AO-A12B 
       99.25       108.72       106.78       108.03        90.58        98.27 
TCGA-AO-A12D TCGA-AO-A12E TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO 
       64.04        57.30        48.36        41.62        28.37        14.73 
TCGA-AO-A1KP TCGA-AO-A1KQ TCGA-AO-A1KS TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A04L 
       82.62        61.87         0.53        24.79        26.93       130.09 
TCGA-AQ-A0Y5 TCGA-AQ-A1H3 TCGA-AQ-A7U7 TCGA-AR-A0TP TCGA-AR-A0TR TCGA-AR-A0TS 
        5.65        32.52        19.20       111.32         5.26        74.79 
TCGA-AR-A0TT TCGA-AR-A0TV TCGA-AR-A0TW TCGA-AR-A0TX TCGA-AR-A0TY TCGA-AR-A0TZ 
       86.66        42.35        98.93        64.83        55.86       107.24 
TCGA-AR-A0U0 TCGA-AR-A0U2 TCGA-AR-A0U3 TCGA-AR-A0U4 TCGA-AR-A1AH TCGA-AR-A1AI 
       65.36        83.87       114.02        85.97        75.55        61.84 
TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AM TCGA-AR-A1AN TCGA-AR-A1AO 
       52.77        51.25        48.82        76.11        43.73        43.56 
TCGA-AR-A1AR TCGA-AR-A1AS TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A1AY 
       17.23        37.81        61.28        63.62        62.14        33.73 
TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24Q TCGA-AR-A24S TCGA-AR-A24T 
       96.89        78.51        84.20       104.28        97.84        76.01 
TCGA-AR-A24U TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A250 TCGA-AR-A251 TCGA-AR-A254 
       53.36        50.96        83.77        89.00        78.48        72.76 
TCGA-AR-A255 TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LL 
       58.92       143.21        20.25        62.86        54.21        66.15 
TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A2LR TCGA-AR-A5QM 
       52.11        38.17        39.39        40.54        20.38        54.74 
TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0I9 
       16.04        20.45        10.59       143.38       149.59        12.13 
TCGA-B6-A0IB TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0IJ 
      129.57        50.70        65.72       146.50       112.37       176.98 
TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IO TCGA-B6-A0IP TCGA-B6-A0IQ 
       18.77       126.12        84.59       110.14       110.93       140.88 
TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RL TCGA-B6-A0RM 
      211.56        68.45       189.01       234.28        81.17        78.02 
TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RS TCGA-B6-A0RT TCGA-B6-A0RU TCGA-B6-A0RV 
      102.77       140.48       100.70        89.46       131.21       157.41 
TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WY TCGA-B6-A0WZ 
       97.48       188.68        18.35        21.47       113.79       129.57 
TCGA-B6-A0X0 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KC TCGA-B6-A1KF 
      129.70        28.27        68.94        58.88        43.59       101.52 
TCGA-B6-A1KI TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A402 TCGA-B6-A408 TCGA-B6-A40B 
       73.51       139.17       170.17        74.99        68.12       103.63 
TCGA-B6-A40C TCGA-BH-A0AV TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0AZ TCGA-BH-A0B2 
       71.15        59.84        20.45        25.55        28.50        40.83 
TCGA-BH-A0B3 TCGA-BH-A0B6 TCGA-BH-A0B7 TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BD 
       39.55        56.94        56.98        37.22        32.02        18.21 
TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BP 
       24.85        21.70        44.05        61.68        35.67        48.69 
TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0BW 
       27.19        53.69        53.95        45.57        49.94        11.67 
TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DE 
       49.05        41.75        44.02        42.90        45.83        31.17 
TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DO TCGA-BH-A0DQ 
       23.44        38.01        22.13        13.91        17.26         3.22 
TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E0 
        2.56        38.47        67.86        47.41        16.27         4.41 
TCGA-BH-A0E1 TCGA-BH-A0E6 TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EA TCGA-BH-A0EB 
       15.68         9.63        44.81        46.19        32.58        24.49 
TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 
       31.00        24.43        30.35        10.78        15.16        37.78 
TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H7 TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0HI 
       35.51        24.56        23.08        41.00        52.96        20.38 
TCGA-BH-A0HK TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW 
        5.85         2.50        13.61        36.85        12.89        51.32 
TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0RX TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0WA 
       27.25        50.79         5.59        24.95        42.35        23.05 
TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18K TCGA-BH-A18L 
        8.81         2.01         7.23        20.12        90.84        26.66 
TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18R TCGA-BH-A18S 
       72.56        37.74        30.28        55.63        37.55        66.05 
TCGA-BH-A1EN TCGA-BH-A1EO TCGA-BH-A1ET TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1EX 
       69.93        91.99        82.85        12.00        55.69        49.58 
TCGA-BH-A1F0 TCGA-BH-A1F2 TCGA-BH-A1F6 TCGA-BH-A1F8 TCGA-BH-A1FB TCGA-BH-A1FC 
       25.81        31.53        97.48        24.66       120.62       114.15 
TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL 
       33.17        74.73       122.89        36.92        63.35        55.00 
TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A203 TCGA-BH-A204 
      144.59        72.07        28.14        26.14        38.60        83.31 
TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U 
      130.16        10.65         6.44        20.12        10.52       109.28 
TCGA-BH-A42V TCGA-BH-A6R8 TCGA-BH-A6R9 TCGA-BH-A8FY TCGA-BH-A8G0 TCGA-BH-AB28 
        8.94         9.63         5.26         9.70        21.76         9.44 
TCGA-C8-A12L TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12U 
       11.93        11.77        11.77        11.77        12.66        12.66 
TCGA-C8-A12V TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A12Z TCGA-C8-A130 TCGA-C8-A131 
       12.66        12.66        12.66         0.39         3.16         2.24 
TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A135 TCGA-C8-A137 TCGA-C8-A138 TCGA-C8-A1HE 
        1.87         1.12         1.05         4.11         4.08        12.33 
TCGA-C8-A1HF TCGA-C8-A1HI TCGA-C8-A1HJ TCGA-C8-A1HL TCGA-C8-A1HM TCGA-C8-A1HN 
       10.92        11.28         0.16        10.42         2.30         3.25 
TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A275 
        0.30         0.23         0.43         8.28         9.67         0.03 
TCGA-C8-A278 TCGA-C8-A3M7 TCGA-C8-A8HP TCGA-C8-A8HQ TCGA-C8-A9FZ TCGA-D8-A13Z 
        9.50         0.03        13.02        12.49        19.46        20.88 
TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A146 TCGA-D8-A1J8 
       13.25        20.58        13.97        14.17        21.14        14.17 
TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JD TCGA-D8-A1JF TCGA-D8-A1JH 
       17.49        16.50        18.71        18.15        12.03        14.01 
TCGA-D8-A1JI TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JN TCGA-D8-A1JS TCGA-D8-A1JT 
       18.97        20.12        20.09        20.38        12.20        13.32 
TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1X9 
       14.70        18.58        17.79        16.73        25.74        23.90 
TCGA-D8-A1XD TCGA-D8-A1XF TCGA-D8-A1XG TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XL 
       17.16        15.22        14.73        21.83        14.50        19.92 
TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XQ TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XT 
       17.69        15.55        16.41        15.85        16.31         6.35 
TCGA-D8-A1XV TCGA-D8-A1XW TCGA-D8-A1XY TCGA-D8-A1XZ TCGA-D8-A1Y2 TCGA-D8-A1Y3 
       15.16        12.66        16.54        15.32        14.24        14.14 
TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27G TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27L 
       17.42        16.04        13.45        14.43         9.44        16.41 
TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27R TCGA-D8-A27T TCGA-D8-A27V TCGA-D8-A27W 
        4.80         0.76        10.09        13.08        12.53        12.26 
TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-D8-A73U TCGA-D8-A73X TCGA-E2-A105 
       33.37        18.51        21.67        16.18        12.10        43.00 
TCGA-E2-A108 TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N 
       27.52        40.41        37.51        28.44        28.87        47.15 
TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14Q TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U 
       44.68        40.96        38.24        33.17        33.30        43.33 
TCGA-E2-A14V TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A154 TCGA-E2-A156 
       34.26        31.96        28.60        18.51        19.43        23.87 
TCGA-E2-A158 TCGA-E2-A159 TCGA-E2-A15A TCGA-E2-A15C TCGA-E2-A15G TCGA-E2-A15I 
       14.79        25.05        23.34        22.82        18.21        17.42 
TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15O TCGA-E2-A15P 
       19.40         9.04        20.58        11.05        13.02        19.56 
TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 
       17.06        14.07        14.99        53.62        53.03        33.01 
TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BC TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IH 
       32.35        28.50        16.47        38.30        37.41        33.73 
TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IO 
       33.70        28.44        22.65         3.88        22.19        20.98 
TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L9 TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LE 
       11.08        54.18        19.66        24.59        40.47        28.90 
TCGA-E2-A1LG TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A1LL TCGA-E2-A2P5 
       18.87       106.75       102.61         8.75        43.04        16.93 
TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A573 TCGA-E2-A574 
        5.52        15.72         8.28        30.61        34.92        26.56 
TCGA-E2-A576 TCGA-E2-A9RU TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N8 
       34.29        12.85        34.82        32.88        36.82        12.00 
TCGA-E9-A1N9 TCGA-E9-A1NE TCGA-E9-A1NG TCGA-E9-A1NI TCGA-E9-A1R0 TCGA-E9-A1R2 
       13.12        35.77        25.84         9.86        28.27        34.95 
TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R7 TCGA-E9-A1RC TCGA-E9-A1RD 
        2.56         6.12         3.02        21.21        40.24         1.12 
TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RH TCGA-E9-A1RI TCGA-E9-A226 TCGA-E9-A227 
       34.65         6.58        34.59        35.64        34.13        32.05 
TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A22D TCGA-E9-A22G 
       12.53        13.32        39.09        22.75        41.03        23.51 
TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A244 TCGA-E9-A247 TCGA-E9-A248 TCGA-E9-A24A 
       20.71        17.06         0.69        27.22         1.94        24.56 
TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A54X 
        0.72        29.72         0.76        26.07        18.41        12.33 
TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A6HE TCGA-EW-A1IW TCGA-EW-A1IX 
       23.84        14.70         0.79        15.39        12.20        39.72 
TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J5 TCGA-EW-A1J6 
        8.48        18.21        13.25        16.57        15.68        28.77 
TCGA-EW-A1OV TCGA-EW-A1OW TCGA-EW-A1OX TCGA-EW-A1OZ TCGA-EW-A1P0 TCGA-EW-A1P1 
       25.94        22.82        29.95        40.41        41.13        39.78 
TCGA-EW-A1P3 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1P8 TCGA-EW-A1PA TCGA-EW-A1PB 
       52.96        18.48        30.08         7.86        18.90        19.99 
TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PF TCGA-EW-A1PG TCGA-EW-A1PH 
        6.15        13.94        10.52        14.43        34.55        19.96 
TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A3U0 
       55.00        52.73        25.91        22.09        34.03        17.49 
TCGA-EW-A423 TCGA-EW-A424 TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DD 
       10.16        23.51        59.57       216.76        79.10        75.02 
TCGA-GM-A2DF TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN 
       70.85        85.15        86.96       115.69       106.06       101.62 
TCGA-GM-A2DO TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XN TCGA-GM-A4E0 
       85.35       110.50        38.20        43.73        66.38        72.03 
TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2NL TCGA-HN-A2OB TCGA-JL-A3YX TCGA-LD-A66U 
       13.55        18.12         2.60        62.43        11.57        21.24 
TCGA-LD-A74U TCGA-LD-A7W5 TCGA-LD-A7W6 TCGA-LD-A9QF TCGA-LL-A440 TCGA-LL-A441 
       13.22         7.10        13.28        10.62        24.95        11.44 
TCGA-LL-A442 TCGA-LL-A50Y TCGA-LL-A5YL TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A5YO 
       10.95        25.05        17.06        15.32        14.70        14.47 
TCGA-LL-A5YP TCGA-LL-A6FP TCGA-LL-A6FQ TCGA-LL-A73Y TCGA-LL-A73Z TCGA-LL-A7SZ 
       14.79        22.26         2.63        15.68         7.46        14.70 
TCGA-LL-A7T0 TCGA-LL-A9Q3 TCGA-LQ-A4E4 TCGA-OK-A5Q2 TCGA-OL-A5D7 TCGA-OL-A5D8 
       12.36        14.07        27.91         2.10        58.52        31.99 
TCGA-OL-A5RU TCGA-OL-A5RV TCGA-OL-A5RW TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5RZ 
       40.08        34.92        36.36        28.87        24.72        22.32 
TCGA-OL-A5S0 TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66K TCGA-OL-A66L 
       20.38        26.70        23.47        65.62        41.92        42.77 
TCGA-OL-A66N TCGA-OL-A66O TCGA-OL-A66P TCGA-OL-A6VO TCGA-OL-A6VQ TCGA-OL-A97C 
       26.04        17.36        14.07        28.21        19.73         8.91 
TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE TCGA-PL-A8LX TCGA-PL-A8LY TCGA-PL-A8LZ 
       47.01        64.21        86.96         0.16         0.26         9.93 
TCGA-S3-A6ZF TCGA-S3-A6ZH TCGA-S3-AA0Z TCGA-S3-AA11 TCGA-S3-AA12 TCGA-S3-AA14 
       16.50        16.93        16.80        13.84        15.35        14.96 
TCGA-S3-AA15 TCGA-UL-AAZ6 TCGA-UU-A93S TCGA-W8-A86G TCGA-WT-AB41 TCGA-WT-AB44 
       13.84        17.03         3.81        11.41        52.96        29.03 
TCGA-XX-A899 TCGA-XX-A89A TCGA-Z7-A8R5 TCGA-Z7-A8R6 
       15.35        16.04       108.07       107.05 

  DEL PEAK  9(6P25.3) MUTATED DEL PEAK  9(6P25.3) WILD-TYPE 
                         0.23                          0.03 
  DEL PEAK  9(6P25.3) MUTATED DEL PEAK  9(6P25.3) WILD-TYPE 
                       220.90                        234.28 
  DEL PEAK  9(6P25.3) MUTATED DEL PEAK  9(6P25.3) WILD-TYPE 
                       23.375                        24.625 
[1] "0.2 - 220.9 (23.4)" "0.0 - 234.3 (24.6)"
[1] "hr=" "1"  
D38V2, continuous
                               vv
clus                            STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  DEL PEAK  9(6P25.3) MUTATED        11       17        1        0        77
  DEL PEAK  9(6P25.3) WILD-TYPE      78       64        7        3       276
                               vv
clus                            STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  DEL PEAK  9(6P25.3) MUTATED          52         0         29          4
  DEL PEAK  9(6P25.3) WILD-TYPE       193         2        121         25
                               vv
clus                            STAGE IIIC STAGE IV STAGE TIS STAGE X
  DEL PEAK  9(6P25.3) MUTATED            5        4         0       1
  DEL PEAK  9(6P25.3) WILD-TYPE         58       16         1      12
D38V3, multiclass
            clus
vv           DEL PEAK  9(6P25.3) MUTATED DEL PEAK  9(6P25.3) WILD-TYPE
  STAGE I                             11                            78
  STAGE IA                            17                            64
  STAGE IB                             1                             7
  STAGE II                             0                             3
  STAGE IIA                           77                           276
  STAGE IIB                           52                           193
  STAGE III                            0                             2
  STAGE IIIA                          29                           121
  STAGE IIIB                           4                            25
  STAGE IIIC                           5                            58
  STAGE IV                             4                            16
  STAGE TIS                            0                             1
  STAGE X                              1                            12
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                             T1  T2  T3  T4
  DEL PEAK  9(6P25.3) MUTATED    46 135  15   6
  DEL PEAK  9(6P25.3) WILD-TYPE 226 481 115  34
D38V4, multiclass
    clus
vv   DEL PEAK  9(6P25.3) MUTATED DEL PEAK  9(6P25.3) WILD-TYPE
  T1                          46                           226
  T2                         135                           481
  T3                          15                           115
  T4                           6                            34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                             N0  N1  N2  N3
  DEL PEAK  9(6P25.3) MUTATED   100  70  25   7
  DEL PEAK  9(6P25.3) WILD-TYPE 401 280  92  68
D38V5, multiclass
    clus
vv   DEL PEAK  9(6P25.3) MUTATED DEL PEAK  9(6P25.3) WILD-TYPE
  N0                         100                           401
  N1                          70                           280
  N2                          25                            92
  N3                           7                            68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D38V6, binary
                               cls
clus                              0   1
  DEL PEAK  9(6P25.3) MUTATED   173   4
  DEL PEAK  9(6P25.3) WILD-TYPE 706  17
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  9(6P25.3) MUTATED    173    4
  DEL PEAK  9(6P25.3) WILD-TYPE  706   17
   clus
vv  DEL PEAK  9(6P25.3) MUTATED DEL PEAK  9(6P25.3) WILD-TYPE
  0                         173                           706
  1                           4                            17
[1] 2 2
[1] FALSE
D38V7, binary
                               cls
clus                              0   1
  DEL PEAK  9(6P25.3) MUTATED   198   4
  DEL PEAK  9(6P25.3) WILD-TYPE 853   7
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  9(6P25.3) MUTATED    198    4
  DEL PEAK  9(6P25.3) WILD-TYPE  853    7
        clus
vv       DEL PEAK  9(6P25.3) MUTATED DEL PEAK  9(6P25.3) WILD-TYPE
  FEMALE                         198                           853
  MALE                             4                             7
[1] 2 2
[1] FALSE
                               vv
clus                            INFILTRATING CARCINOMA NOS
  DEL PEAK  9(6P25.3) MUTATED                            1
  DEL PEAK  9(6P25.3) WILD-TYPE                          0
                               vv
clus                            INFILTRATING DUCTAL CARCINOMA
  DEL PEAK  9(6P25.3) MUTATED                             159
  DEL PEAK  9(6P25.3) WILD-TYPE                           604
                               vv
clus                            INFILTRATING LOBULAR CARCINOMA
  DEL PEAK  9(6P25.3) MUTATED                               24
  DEL PEAK  9(6P25.3) WILD-TYPE                            168
                               vv
clus                            MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  DEL PEAK  9(6P25.3) MUTATED                     2                     0
  DEL PEAK  9(6P25.3) WILD-TYPE                   4                     4
                               vv
clus                            MIXED HISTOLOGY (PLEASE SPECIFY)
  DEL PEAK  9(6P25.3) MUTATED                                  5
  DEL PEAK  9(6P25.3) WILD-TYPE                               25
                               vv
clus                            MUCINOUS CARCINOMA OTHER  SPECIFY
  DEL PEAK  9(6P25.3) MUTATED                    3              8
  DEL PEAK  9(6P25.3) WILD-TYPE                 14             40
D38V8, multiclass
                                  clus
vv                                 DEL PEAK  9(6P25.3) MUTATED
  INFILTRATING CARCINOMA NOS                                 1
  INFILTRATING DUCTAL CARCINOMA                            159
  INFILTRATING LOBULAR CARCINOMA                            24
  MEDULLARY CARCINOMA                                        2
  METAPLASTIC CARCINOMA                                      0
  MIXED HISTOLOGY (PLEASE SPECIFY)                           5
  MUCINOUS CARCINOMA                                         3
  OTHER  SPECIFY                                             8
                                  clus
vv                                 DEL PEAK  9(6P25.3) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                   0
  INFILTRATING DUCTAL CARCINOMA                              604
  INFILTRATING LOBULAR CARCINOMA                             168
  MEDULLARY CARCINOMA                                          4
  METAPLASTIC CARCINOMA                                        4
  MIXED HISTOLOGY (PLEASE SPECIFY)                            25
  MUCINOUS CARCINOMA                                          14
  OTHER  SPECIFY                                              40
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D38V9, binary
                               cls
clus                              0   1
  DEL PEAK  9(6P25.3) MUTATED    65 137
  DEL PEAK  9(6P25.3) WILD-TYPE 223 637
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  9(6P25.3) MUTATED     65  137
  DEL PEAK  9(6P25.3) WILD-TYPE  223  637
     clus
vv    DEL PEAK  9(6P25.3) MUTATED DEL PEAK  9(6P25.3) WILD-TYPE
  NO                           65                           223
  YES                         137                           637
[1] 2 2
[1] FALSE
D38V10, continuous
                               vv
clus                            AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK  9(6P25.3) MUTATED                                  0    14
  DEL PEAK  9(6P25.3) WILD-TYPE                                1    46
                               vv
clus                            BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK  9(6P25.3) MUTATED                          37   134
  DEL PEAK  9(6P25.3) WILD-TYPE                       133   602
D38V11, multiclass
                                  clus
vv                                 DEL PEAK  9(6P25.3) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                           0
  ASIAN                                                     14
  BLACK OR AFRICAN AMERICAN                                 37
  WHITE                                                    134
                                  clus
vv                                 DEL PEAK  9(6P25.3) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                             1
  ASIAN                                                       46
  BLACK OR AFRICAN AMERICAN                                  133
  WHITE                                                      602
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D38V12, binary
                               cls
clus                              0   1
  DEL PEAK  9(6P25.3) MUTATED     5 169
  DEL PEAK  9(6P25.3) WILD-TYPE  33 689
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  9(6P25.3) MUTATED      5  169
  DEL PEAK  9(6P25.3) WILD-TYPE   33  689
                        clus
vv                       DEL PEAK  9(6P25.3) MUTATED
  HISPANIC OR LATINO                               5
  NOT HISPANIC OR LATINO                         169
                        clus
vv                       DEL PEAK  9(6P25.3) WILD-TYPE
  HISPANIC OR LATINO                                33
  NOT HISPANIC OR LATINO                           689
[1] 2 2
[1] FALSE

Clustering(39) Variable = DEL PEAK 10(6Q15) MUTATION ANALYSIS
D39V1, survival
                             sevent
clus2                           0   1
  DEL PEAK 10(6Q15) MUTATED   307  42
  DEL PEAK 10(6Q15) WILD-TYPE 609  86
  DEL PEAK 10(6Q15) MUTATED DEL PEAK 10(6Q15) WILD-TYPE 
                        349                         695 
  DEL PEAK 10(6Q15) MUTATED DEL PEAK 10(6Q15) WILD-TYPE 
                         42                          86 
$`DEL PEAK 10(6Q15) MUTATED`
TCGA-3C-AAAU TCGA-3C-AALI TCGA-3C-AALJ TCGA-5T-A9QA TCGA-A1-A0SE TCGA-A1-A0SG 
      129.14       131.67        42.81         9.96        43.43        14.27 
TCGA-A1-A0SN TCGA-A2-A04R TCGA-A2-A04U TCGA-A2-A04W TCGA-A2-A04X TCGA-A2-A0CM 
       39.32       121.94        87.25       101.98        55.43        24.79 
TCGA-A2-A0CQ TCGA-A2-A0CR TCGA-A2-A0CS TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV 
       88.60       107.93        75.55        75.25         5.19        98.99 
TCGA-A2-A0D4 TCGA-A2-A0EO TCGA-A2-A0ET TCGA-A2-A0SV TCGA-A2-A0T3 TCGA-A2-A0T6 
       25.22        80.28        35.05        27.12        49.84        18.90 
TCGA-A2-A0T7 TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1FX TCGA-A2-A25A 
       20.75        23.77        23.47        17.36        60.72       107.70 
TCGA-A2-A25B TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A3KD TCGA-A2-A3XS 
       42.44        17.19        18.15       105.34        39.65        33.93 
TCGA-A2-A3XW TCGA-A2-A4RY TCGA-A7-A0CD TCGA-A7-A0CJ TCGA-A7-A13D TCGA-A7-A13F 
       49.48        21.30        38.30        30.61        31.73        25.15 
TCGA-A7-A26J TCGA-A7-A3IY TCGA-A7-A3J1 TCGA-A7-A426 TCGA-A8-A06O TCGA-A8-A06Q 
       20.61        11.34        11.28        11.97        13.02         1.02 
TCGA-A8-A06R TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A076 TCGA-A8-A079 TCGA-A8-A07B 
       17.98        26.01         1.02        53.98         9.01        43.00 
TCGA-A8-A07J TCGA-A8-A07L TCGA-A8-A07P TCGA-A8-A07S TCGA-A8-A07W TCGA-A8-A082 
       12.00        32.05        10.98         7.99         9.99        18.05 
TCGA-A8-A08F TCGA-A8-A08G TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08O TCGA-A8-A097 
       33.01        19.96        12.00        37.05        31.00        12.00 
TCGA-A8-A09A TCGA-A8-A09C TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K TCGA-A8-A09M 
        9.99         1.02        49.05        45.07        29.98        33.07 
TCGA-A8-A09Q TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09W TCGA-A8-A0A4 TCGA-A8-A0A6 
       25.02         8.98        19.04         0.99        13.02        21.04 
TCGA-A8-A0A9 TCGA-A8-A0AD TCGA-AC-A23G TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FM 
       27.02        38.04        10.85        38.53        99.35        26.04 
TCGA-AC-A2QH TCGA-AC-A3BB TCGA-AC-A3W5 TCGA-AC-A62Y TCGA-AC-A8OP TCGA-AC-A8OR 
       33.04        32.45        16.57        17.42        20.19         1.32 
TCGA-AN-A041 TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A0AL TCGA-AN-A0AS TCGA-AN-A0FF 
        0.23         2.96         1.78         6.51         0.33         5.65 
TCGA-AN-A0FJ TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FX TCGA-AN-A0FZ TCGA-AN-A0XW 
        7.96         0.33         0.36         0.33         0.33         5.59 
TCGA-AO-A03N TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J5 
       66.77        68.75        47.87        32.78        21.40        26.04 
TCGA-AO-A0J6 TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0JE TCGA-AO-A0JG TCGA-AO-A0JI 
       37.48        20.32        22.36        76.77        26.24        50.24 
TCGA-AO-A0JJ TCGA-AO-A0JL TCGA-AO-A126 TCGA-AO-A1KQ TCGA-AO-A1KT TCGA-AQ-A04L 
       62.04        55.33       108.72        61.87        17.79       130.09 
TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AQ-A54N TCGA-AQ-A54O TCGA-AQ-A7U7 TCGA-AR-A0TQ 
       15.62        32.52         2.56        32.91        19.20        73.64 
TCGA-AR-A0TR TCGA-AR-A0TZ TCGA-AR-A0U2 TCGA-AR-A0U3 TCGA-AR-A0U4 TCGA-AR-A1AQ 
        5.26       107.24        83.87       114.02        85.97        43.07 
TCGA-AR-A24K TCGA-AR-A24P TCGA-AR-A24R TCGA-AR-A24T TCGA-AR-A24V TCGA-AR-A250 
       50.89         2.76        87.22        76.01        85.35        89.00 
TCGA-AR-A252 TCGA-AR-A255 TCGA-B6-A0IJ TCGA-B6-A0RG TCGA-B6-A0RO TCGA-B6-A0RU 
       73.18        58.92       176.98        68.45       162.05       131.21 
TCGA-B6-A0WS TCGA-B6-A0WV TCGA-B6-A0WY TCGA-B6-A1KC TCGA-B6-A1KN TCGA-B6-A2IU 
       97.48        79.63       113.79        43.59       139.17       170.17 
TCGA-B6-A401 TCGA-B6-A408 TCGA-B6-A40C TCGA-BH-A0AU TCGA-BH-A0B0 TCGA-BH-A0B4 
       85.35        68.12        71.15        24.53        46.95        39.16 
TCGA-BH-A0B5 TCGA-BH-A0BA TCGA-BH-A0BF TCGA-BH-A0BJ TCGA-BH-A0BM TCGA-BH-A0BP 
       48.36        37.22        25.71        21.70        61.68        48.69 
TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BT TCGA-BH-A0BW TCGA-BH-A0C3 TCGA-BH-A0DE 
       27.19        53.69        45.57        11.67        48.13        31.17 
TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DL TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0DS 
       38.01        22.13        48.23        15.65         3.22         2.56 
TCGA-BH-A0DX TCGA-BH-A0E2 TCGA-BH-A0EI TCGA-BH-A0H0 TCGA-BH-A0H7 TCGA-BH-A0HA 
       47.41        14.30        24.43        15.16        23.08        52.96 
TCGA-BH-A0HB TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0W3 TCGA-BH-A0W7 
       26.50        51.32        27.25        50.79        23.93        44.81 
TCGA-BH-A18F TCGA-BH-A18I TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18S TCGA-BH-A18T 
        8.81         7.23        90.84        26.66        66.05         7.36 
TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1EN TCGA-BH-A1ES TCGA-BH-A1EU TCGA-BH-A1EV 
       51.39        51.16        69.93       113.82        42.28        12.00 
TCGA-BH-A1F2 TCGA-BH-A1F5 TCGA-BH-A1FC TCGA-BH-A1FD TCGA-BH-A1FJ TCGA-BH-A1FM 
       31.53        89.16       114.15        33.17        63.35        45.63 
TCGA-BH-A201 TCGA-BH-A203 TCGA-BH-A28Q TCGA-BH-A42T TCGA-BH-A42V TCGA-BH-A5J0 
       28.14        38.60         6.44        10.52         8.94        23.51 
TCGA-BH-A8FZ TCGA-C8-A12M TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12U 
       18.87        11.77        12.66        11.77        12.66        12.66 
TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A135 TCGA-C8-A137 
       12.66        12.66         3.16         2.24         1.05         4.11 
TCGA-C8-A1HG TCGA-C8-A26X TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A275 
       11.34         0.36         0.43         8.28         9.67         0.03 
TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A8HR TCGA-C8-A9FZ TCGA-D8-A13Y TCGA-D8-A140 
       12.20         0.99        13.41        19.46        11.90        13.25 
TCGA-D8-A145 TCGA-D8-A1J9 TCGA-D8-A1JB TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JI 
       13.48        17.49        18.71        18.15        18.90        18.97 
TCGA-D8-A1JT TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XF 
       13.32        25.74        23.90        27.58        18.15        15.22 
TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1XY 
       19.92        17.69        15.55         6.35        12.99        16.54 
TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y3 TCGA-D8-A27R TCGA-D8-A27T TCGA-D8-A27W 
       15.52         9.93        14.14        10.09        13.08        12.26 
TCGA-D8-A73W TCGA-E2-A107 TCGA-E2-A109 TCGA-E2-A10F TCGA-E2-A14S TCGA-E2-A14T 
        8.02        34.42        46.59        28.87        33.17        33.30 
TCGA-E2-A152 TCGA-E2-A153 TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15H TCGA-E2-A15P 
       27.12        23.24        20.71        21.63        12.92        19.56 
TCGA-E2-A15R TCGA-E2-A1AZ TCGA-E2-A1BC TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IL 
       17.06        60.53        16.47        17.10        38.30         3.88 
TCGA-E2-A1L8 TCGA-E2-A1LA TCGA-E2-A1LE TCGA-E2-A1LG TCGA-E2-A1LL TCGA-E2-A9RU 
       39.62        24.59        28.90        18.87        43.04        12.85 
TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N6 TCGA-E9-A1NA TCGA-E9-A1ND TCGA-E9-A1NE 
       32.88        36.82        13.48        36.56        12.59        35.77 
TCGA-E9-A1NF TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R6 TCGA-E9-A1R7 
       35.24        11.90        28.27        34.95         2.76        21.21 
TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RG TCGA-E9-A1RH 
       32.09        32.09        34.65         6.58        21.27        34.59 
TCGA-E9-A1RI TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A249 TCGA-E9-A2JS TCGA-E9-A3X8 
       35.64        13.32        39.09         7.13        29.72        15.72 
TCGA-E9-A54Y TCGA-E9-A5UO TCGA-E9-A5UP TCGA-EW-A1IX TCGA-EW-A1J1 TCGA-EW-A1J2 
       23.84        13.81        14.40        39.72        18.90        13.25 
TCGA-EW-A1J5 TCGA-EW-A1J6 TCGA-EW-A1OY TCGA-EW-A1P0 TCGA-EW-A1P5 TCGA-EW-A2FW 
       15.68        28.77        29.85        41.13        23.11        22.09 
TCGA-EW-A3E8 TCGA-GI-A2C9 TCGA-GM-A2DC TCGA-GM-A2DD TCGA-GM-A3XN TCGA-LD-A66U 
       34.03       109.87        83.34        75.02        66.38        21.24 
TCGA-LD-A7W6 TCGA-LD-A9QF TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A740 TCGA-LL-A7SZ 
       13.28        10.62        15.32        14.70        14.50        14.70 
TCGA-LL-A8F5 TCGA-MS-A51U TCGA-OL-A5D6 TCGA-OL-A5RZ TCGA-OL-A66L TCGA-OL-A66O 
       14.73        22.39        36.30        22.32        42.77        17.36 
TCGA-OL-A6VQ TCGA-OL-A6VR TCGA-PE-A5DC TCGA-PE-A5DE TCGA-S3-A6ZF TCGA-S3-A6ZG 
       19.73        40.11        47.01        86.96        16.50        13.12 
TCGA-S3-A6ZH TCGA-S3-AA10 TCGA-S3-AA12 TCGA-S3-AA14 TCGA-S3-AA17 TCGA-UU-A93S 
       16.93        15.39        15.35        14.96        13.94         3.81 
TCGA-Z7-A8R5 
      108.07 

$`DEL PEAK 10(6Q15) WILD-TYPE`
TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT0 TCGA-5L-AAT1 TCGA-A1-A0SB TCGA-A1-A0SD 
       40.14        11.44        48.56        48.36         8.52        14.37 
TCGA-A1-A0SF TCGA-A1-A0SH TCGA-A1-A0SI TCGA-A1-A0SJ TCGA-A1-A0SK TCGA-A1-A0SM 
       48.10        47.24        20.88        13.68        31.79         7.96 
TCGA-A1-A0SO TCGA-A1-A0SP TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04P TCGA-A2-A04Q 
       28.01        19.20        18.21       104.81        18.02        78.41 
TCGA-A2-A04T TCGA-A2-A04V TCGA-A2-A04Y TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CO 
       73.84        63.12        36.13       136.73        99.12       114.81 
TCGA-A2-A0CP TCGA-A2-A0CW TCGA-A2-A0CX TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D2 
       92.48       107.93        56.81        67.33        34.55        33.76 
TCGA-A2-A0D3 TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EP TCGA-A2-A0EQ TCGA-A2-A0ER 
       61.58       101.72       134.40       107.61        79.76        74.40 
TCGA-A2-A0ES TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0EY 
       72.00        34.29        31.82        61.94        24.72        63.29 
TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SW TCGA-A2-A0SX TCGA-A2-A0SY TCGA-A2-A0T0 
       99.19        54.64        44.88        50.43        44.28        17.52 
TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T4 TCGA-A2-A0T5 TCGA-A2-A0YC TCGA-A2-A0YD 
       17.13         8.38        20.52        17.46        32.55        25.28 
TCGA-A2-A0YE TCGA-A2-A0YF TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YJ 
       18.21        50.47        21.90        21.67        49.48        18.61 
TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A0YM TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G1 
       19.33        48.46        31.73        22.45        20.25        19.20 
TCGA-A2-A1G4 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3XT 
       19.56        16.47        52.47        10.59        20.88        83.01 
TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XX TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A3Y0 
       29.98        32.75        47.31        34.98        50.37        38.37 
TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A2-A4S3 
        7.30        24.39        23.21        26.96        21.14        21.90 
TCGA-A7-A0CE TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DB 
       35.31        34.29        35.47        37.45        35.67        33.11 
TCGA-A7-A0DC TCGA-A7-A13E TCGA-A7-A13G TCGA-A7-A13H TCGA-A7-A26E TCGA-A7-A26F 
       29.79        20.19        23.61        29.56        31.36        24.26 
TCGA-A7-A26G TCGA-A7-A26H TCGA-A7-A26I TCGA-A7-A2KD TCGA-A7-A3IZ TCGA-A7-A3J0 
       23.74        23.80        21.73        22.32        10.59        10.29 
TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A4SA TCGA-A7-A4SB TCGA-A7-A4SD TCGA-A7-A4SE 
       13.41        14.70        14.93        13.74        14.50        21.17 
TCGA-A7-A4SF TCGA-A7-A56D TCGA-A7-A5ZV TCGA-A7-A5ZW TCGA-A7-A5ZX TCGA-A7-A6VV 
       17.92        14.73        12.10        10.72        11.05        10.29 
TCGA-A7-A6VW TCGA-A7-A6VX TCGA-A7-A6VY TCGA-A8-A06P TCGA-A8-A06T TCGA-A8-A06U 
        9.37        10.42         8.75        13.02        53.06        29.03 
TCGA-A8-A06X TCGA-A8-A075 TCGA-A8-A07E TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I 
       31.00        17.03        19.99        18.97        18.97        14.01 
TCGA-A8-A07O TCGA-A8-A07R TCGA-A8-A07U TCGA-A8-A07Z TCGA-A8-A084 TCGA-A8-A085 
        9.99         8.98        24.99        45.07        15.06        36.95 
TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08B TCGA-A8-A08C TCGA-A8-A08L TCGA-A8-A08P 
       13.02         0.99        38.01        28.96         9.99        31.00 
TCGA-A8-A08R TCGA-A8-A08S TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A08Z TCGA-A8-A091 
        0.99        33.01       112.08        43.00        40.01        33.01 
TCGA-A8-A092 TCGA-A8-A093 TCGA-A8-A095 TCGA-A8-A099 TCGA-A8-A09B TCGA-A8-A09D 
       30.97        17.95        41.98         9.99        12.00        50.04 
TCGA-A8-A09N TCGA-A8-A09V TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A7 
        1.02        15.02        14.01        12.00        19.04         0.99 
TCGA-A8-A0AB TCGA-AC-A23C TCGA-AC-A23E TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2FB 
       17.03         0.95         2.37         5.72         1.48        40.57 
TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FO TCGA-AC-A2QI TCGA-AC-A2QJ 
       55.43        36.99        38.79        50.70         0.92         2.27 
TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3TN TCGA-AC-A3W6 TCGA-AC-A3YI 
       16.31        14.83        22.19        14.99        19.79        23.24 
TCGA-AC-A3YJ TCGA-AC-A5XS TCGA-AC-A62V TCGA-AC-A62X TCGA-AC-A6IV TCGA-AC-A6IW 
       24.79         1.55        11.44        13.71        18.67        13.58 
TCGA-AC-A6IX TCGA-AC-A6NO TCGA-AC-A7VB TCGA-AC-A7VC TCGA-AC-A8OQ TCGA-AC-A8OS 
       12.26         1.68         8.22         0.03         1.12         2.30 
TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A046 TCGA-AN-A049 TCGA-AN-A04D TCGA-AN-A0AJ 
        0.33         0.33         0.33         0.62         1.71         9.96 
TCGA-AN-A0AK TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0FK 
        7.36         0.16         0.33         0.33         6.44         7.00 
TCGA-AN-A0FL TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FY TCGA-AN-A0XL 
        7.59         7.17         6.28         7.04         0.33         0.33 
TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS TCGA-AN-A0XT 
        0.33        12.33         0.30         0.33         0.33         0.33 
TCGA-AN-A0XU TCGA-AN-A0XV TCGA-AO-A03L TCGA-AO-A03M TCGA-AO-A03O TCGA-AO-A03P 
        0.33         5.33        80.28        61.35        81.63        95.70 
TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J4 TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JB 
       58.95        29.13        52.18        53.03        21.53        50.70 
TCGA-AO-A0JC TCGA-AO-A0JD TCGA-AO-A0JF TCGA-AO-A0JM TCGA-AO-A124 TCGA-AO-A125 
       50.86        72.00        21.37        71.80       102.58        99.25 
TCGA-AO-A128 TCGA-AO-A129 TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A12E 
      106.78       108.03        90.58        98.27        64.04        57.30 
TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KR 
       48.36        41.62        28.37        14.73        82.62        70.39 
TCGA-AO-A1KS TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A0Y5 TCGA-AR-A0TP TCGA-AR-A0TS 
        0.53        24.79        26.93         5.65       111.32        74.79 
TCGA-AR-A0TT TCGA-AR-A0TV TCGA-AR-A0TW TCGA-AR-A0TX TCGA-AR-A0TY TCGA-AR-A0U0 
       86.66        42.35        98.93        64.83        55.86        65.36 
TCGA-AR-A0U1 TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AL 
      101.95        75.55        61.84        52.77        51.25        48.82 
TCGA-AR-A1AM TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AR TCGA-AR-A1AS 
       76.11        43.73        43.56        39.98        17.23        37.81 
TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24H 
       76.21        61.28        63.62        62.14        33.73       160.90 
TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24Q TCGA-AR-A24S 
       94.22        96.89        78.51        84.20       104.28        97.84 
TCGA-AR-A24U TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A24Z TCGA-AR-A251 TCGA-AR-A254 
       53.36        50.96        83.77        79.00        78.48        72.76 
TCGA-AR-A256 TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LL 
       93.83       143.21        20.25        62.86        54.21        66.15 
TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A2LR TCGA-AR-A5QM 
       52.11        38.17        39.39        40.54        20.38        54.74 
TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 
       16.04        20.45        10.59        77.62       143.38       149.59 
TCGA-B6-A0I9 TCGA-B6-A0IA TCGA-B6-A0IB TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG 
       12.13       220.90       129.57        50.70        65.72       146.50 
TCGA-B6-A0IH TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IO TCGA-B6-A0IP 
      112.37        18.77       126.12        84.59       110.14       110.93 
TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RL TCGA-B6-A0RM 
      140.88       211.56       189.01       234.28        81.17        78.02 
TCGA-B6-A0RN TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RS TCGA-B6-A0RT TCGA-B6-A0RV 
      172.96       102.77       140.48       100.70        89.46       157.41 
TCGA-B6-A0WT TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 
      188.68        18.35        21.47       129.57       129.70       186.48 
TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A402 
       28.27        68.94        58.88       101.52        73.51        74.99 
TCGA-B6-A40B TCGA-BH-A0AV TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0AZ TCGA-BH-A0B2 
      103.63        59.84        20.45        25.55        28.50        40.83 
TCGA-BH-A0B3 TCGA-BH-A0B6 TCGA-BH-A0B7 TCGA-BH-A0B9 TCGA-BH-A0BC TCGA-BH-A0BD 
       39.55        56.94        56.98        51.68        32.02        18.21 
TCGA-BH-A0BG TCGA-BH-A0BL TCGA-BH-A0BO TCGA-BH-A0BS TCGA-BH-A0BV TCGA-BH-A0BZ 
       24.85        44.05        35.67        53.95        49.94        49.05 
TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DG TCGA-BH-A0DK 
       41.75        44.02        42.90        45.83        23.44        13.91 
TCGA-BH-A0DO TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E1 
       17.26        38.47        67.86        16.27         4.41        15.68 
TCGA-BH-A0E6 TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EA TCGA-BH-A0EB TCGA-BH-A0EE 
        9.63        44.81        46.19        32.58        24.49        31.00 
TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H9 
       30.35        10.78        37.78        35.51        24.56        41.00 
TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HU 
       20.38         5.85         2.50        13.61        36.85        12.89 
TCGA-BH-A0RX TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0WA TCGA-BH-A18G TCGA-BH-A18J 
        5.59        24.95        42.35        23.05         2.01        20.12 
TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18R TCGA-BH-A1EO 
       72.56        37.74        30.28        55.63        37.55        91.99 
TCGA-BH-A1ET TCGA-BH-A1EW TCGA-BH-A1EX TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F6 
       82.85        55.69        49.58        17.69        25.81        97.48 
TCGA-BH-A1F8 TCGA-BH-A1FB TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FL 
       24.66       120.62        74.73       122.89        36.92        55.00 
TCGA-BH-A1FN TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A202 TCGA-BH-A204 TCGA-BH-A208 
       72.07       144.59        72.07        26.14        83.31        57.83 
TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A2L8 TCGA-BH-A42U TCGA-BH-A5IZ TCGA-BH-A6R8 
      130.16        10.65        20.12       109.28        18.64         9.63 
TCGA-BH-A6R9 TCGA-BH-A8FY TCGA-BH-A8G0 TCGA-BH-AB28 TCGA-C8-A12L TCGA-C8-A12N 
        5.26         9.70        21.76         9.44        11.93        11.77 
TCGA-C8-A12V TCGA-C8-A12Z TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A138 TCGA-C8-A1HE 
       12.66         0.39         1.87         1.12         4.08        12.33 
TCGA-C8-A1HF TCGA-C8-A1HI TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HL TCGA-C8-A1HM 
       10.92        11.28         0.16        12.03        10.42         2.30 
TCGA-C8-A1HN TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A274 TCGA-C8-A278 TCGA-C8-A3M7 
        3.25         0.30         0.23         9.53         9.50         0.03 
TCGA-C8-A3M8 TCGA-C8-A8HP TCGA-C8-A8HQ TCGA-D8-A13Z TCGA-D8-A141 TCGA-D8-A142 
        0.23        13.02        12.49        20.88        20.58        13.97 
TCGA-D8-A143 TCGA-D8-A146 TCGA-D8-A147 TCGA-D8-A1J8 TCGA-D8-A1JA TCGA-D8-A1JC 
       14.17        21.14        19.20        14.17        16.50        15.78 
TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JH TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JL 
       12.03        12.03        14.01        20.09        20.12        20.09 
TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1JP TCGA-D8-A1JS TCGA-D8-A1JU TCGA-D8-A1X5 
       19.40        20.38        21.01        12.20        14.70        18.58 
TCGA-D8-A1X6 TCGA-D8-A1X7 TCGA-D8-A1XC TCGA-D8-A1XD TCGA-D8-A1XG TCGA-D8-A1XJ 
       17.79        16.73        12.39        17.16        14.73        21.83 
TCGA-D8-A1XK TCGA-D8-A1XQ TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XV TCGA-D8-A1XW 
       14.50        16.41        15.85        16.31        15.16        12.66 
TCGA-D8-A1XZ TCGA-D8-A1Y2 TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27G TCGA-D8-A27H 
       15.32        14.24        17.42        16.04        13.45        13.05 
TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27P 
       14.43         9.44        16.41        13.48         4.80         0.76 
TCGA-D8-A27V TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-D8-A73U TCGA-D8-A73X 
       12.53        33.37        18.51        21.67        16.18        12.10 
TCGA-E2-A105 TCGA-E2-A108 TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10C TCGA-E2-A10E 
       43.00        27.52        40.41        37.51        40.11        28.44 
TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14Q TCGA-E2-A14R TCGA-E2-A14U 
       47.15        44.68        40.96        38.24        38.60        43.33 
TCGA-E2-A14V TCGA-E2-A14W TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A150 
       34.26        32.02        31.96        28.60        18.51        25.41 
TCGA-E2-A154 TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A158 TCGA-E2-A159 TCGA-E2-A15A 
       19.43        21.04        23.87        14.79        25.05        23.34 
TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15G TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K 
       22.82        17.29        18.21        17.42        19.40         9.04 
TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15O TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1B0 
       20.58        11.05        13.02        14.07        14.99        53.62 
TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1IF TCGA-E2-A1IG 
       53.03        33.01        32.35        28.50        37.41        32.78 
TCGA-E2-A1IH TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IN TCGA-E2-A1IO 
       33.73        33.70        28.44        22.65        22.19        20.98 
TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L9 TCGA-E2-A1LB TCGA-E2-A1LH 
       11.08        54.18        27.42        19.66        40.47       106.75 
TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A2P5 TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z 
      102.61         8.75        16.93         5.52        15.72         8.28 
TCGA-E2-A570 TCGA-E2-A573 TCGA-E2-A574 TCGA-E2-A576 TCGA-E9-A1N3 TCGA-E9-A1N8 
       30.61        34.92        26.56        34.29        34.82        12.00 
TCGA-E9-A1N9 TCGA-E9-A1NC TCGA-E9-A1NG TCGA-E9-A1NI TCGA-E9-A1R3 TCGA-E9-A1R4 
       13.12        39.55        25.84         9.86         2.56         6.12 
TCGA-E9-A1R5 TCGA-E9-A1RC TCGA-E9-A1RD TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A228 
        3.02        40.24         1.12        34.13        32.05        12.53 
TCGA-E9-A22B TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A22H TCGA-E9-A243 
       22.75        41.03        12.89        23.51        20.71        17.06 
TCGA-E9-A244 TCGA-E9-A247 TCGA-E9-A248 TCGA-E9-A24A TCGA-E9-A295 TCGA-E9-A2JT 
        0.69        27.22         1.94        24.56         0.72         0.76 
TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3QA TCGA-E9-A54X TCGA-E9-A5FK TCGA-E9-A5FL 
       26.07        18.41        30.18        12.33        14.70         0.79 
TCGA-E9-A6HE TCGA-EW-A1IW TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J3 TCGA-EW-A1OV 
       15.39        12.20         8.48        18.21        16.57        25.94 
TCGA-EW-A1OW TCGA-EW-A1OX TCGA-EW-A1OZ TCGA-EW-A1P1 TCGA-EW-A1P3 TCGA-EW-A1P4 
       22.82        29.95        40.41        39.78        52.96        29.82 
TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1P8 TCGA-EW-A1PA TCGA-EW-A1PB TCGA-EW-A1PC 
       18.48        30.08         7.86        18.90        19.99         6.15 
TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PF TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FR 
       13.94        10.52        14.43        34.55        19.96        55.00 
TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A3U0 TCGA-EW-A423 TCGA-EW-A424 TCGA-GI-A2C8 
       52.73        25.91        17.49        10.16        23.51         7.40 
TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A2DI 
       59.57       216.76        79.10        70.85        72.10        85.15 
TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A2DO TCGA-GM-A3NW 
       86.96       115.69       106.06       101.62        85.35       110.50 
TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XL TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX 
       38.20        43.73        69.30        72.03        13.55        18.12 
TCGA-HN-A2NL TCGA-HN-A2OB TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LD-A74U TCGA-LD-A7W5 
        2.60        62.43        11.84        11.57        13.22         7.10 
TCGA-LL-A440 TCGA-LL-A441 TCGA-LL-A442 TCGA-LL-A50Y TCGA-LL-A5YL TCGA-LL-A5YO 
       24.95        11.44        10.95        25.05        17.06        14.47 
TCGA-LL-A5YP TCGA-LL-A6FP TCGA-LL-A6FQ TCGA-LL-A6FR TCGA-LL-A73Y TCGA-LL-A73Z 
       14.79        22.26         2.63        16.08        15.68         7.46 
TCGA-LL-A7T0 TCGA-LL-A9Q3 TCGA-LQ-A4E4 TCGA-OK-A5Q2 TCGA-OL-A5D7 TCGA-OL-A5D8 
       12.36        14.07        27.91         2.10        58.52        31.99 
TCGA-OL-A5DA TCGA-OL-A5RU TCGA-OL-A5RV TCGA-OL-A5RW TCGA-OL-A5RX TCGA-OL-A5RY 
       58.62        40.08        34.92        36.36        28.87        24.72 
TCGA-OL-A5S0 TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66K TCGA-OL-A66N 
       20.38        26.70        23.47        65.62        41.92        26.04 
TCGA-OL-A66P TCGA-OL-A6VO TCGA-OL-A97C TCGA-PE-A5DD TCGA-PL-A8LX TCGA-PL-A8LY 
       14.07        28.21         8.91        64.21         0.16         0.26 
TCGA-PL-A8LZ TCGA-S3-AA0Z TCGA-S3-AA11 TCGA-S3-AA15 TCGA-UL-AAZ6 TCGA-W8-A86G 
        9.93        16.80        13.84        13.84        17.03        11.41 
TCGA-WT-AB41 TCGA-WT-AB44 TCGA-XX-A899 TCGA-XX-A89A TCGA-Z7-A8R6 
       52.96        29.03        15.35        16.04       107.05 

  DEL PEAK 10(6Q15) MUTATED DEL PEAK 10(6Q15) WILD-TYPE 
                       0.03                        0.03 
  DEL PEAK 10(6Q15) MUTATED DEL PEAK 10(6Q15) WILD-TYPE 
                     176.98                      234.28 
  DEL PEAK 10(6Q15) MUTATED DEL PEAK 10(6Q15) WILD-TYPE 
                      23.93                       24.66 
[1] "0.0 - 177.0 (23.9)" "0.0 - 234.3 (24.7)"
[1] "hr=" "1.1"
D39V2, continuous
                             vv
clus                          STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  DEL PEAK 10(6Q15) MUTATED        28       29        2        0       103
  DEL PEAK 10(6Q15) WILD-TYPE      61       52        6        3       250
                             vv
clus                          STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  DEL PEAK 10(6Q15) MUTATED          90         0         57         14
  DEL PEAK 10(6Q15) WILD-TYPE       155         2         93         15
                             vv
clus                          STAGE IIIC STAGE IV STAGE TIS STAGE X
  DEL PEAK 10(6Q15) MUTATED           17        8         0       5
  DEL PEAK 10(6Q15) WILD-TYPE         46       12         1       8
D39V3, multiclass
            clus
vv           DEL PEAK 10(6Q15) MUTATED DEL PEAK 10(6Q15) WILD-TYPE
  STAGE I                           28                          61
  STAGE IA                          29                          52
  STAGE IB                           2                           6
  STAGE II                           0                           3
  STAGE IIA                        103                         250
  STAGE IIB                         90                         155
  STAGE III                          0                           2
  STAGE IIIA                        57                          93
  STAGE IIIB                        14                          15
  STAGE IIIC                        17                          46
  STAGE IV                           8                          12
  STAGE TIS                          0                           1
  STAGE X                            5                           8
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                           T1  T2  T3  T4
  DEL PEAK 10(6Q15) MUTATED    98 198  39  17
  DEL PEAK 10(6Q15) WILD-TYPE 174 418  91  23
D39V4, multiclass
    clus
vv   DEL PEAK 10(6Q15) MUTATED DEL PEAK 10(6Q15) WILD-TYPE
  T1                        98                         174
  T2                       198                         418
  T3                        39                          91
  T4                        17                          23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                           N0  N1  N2  N3
  DEL PEAK 10(6Q15) MUTATED   148 126  49  23
  DEL PEAK 10(6Q15) WILD-TYPE 353 224  68  52
D39V5, multiclass
    clus
vv   DEL PEAK 10(6Q15) MUTATED DEL PEAK 10(6Q15) WILD-TYPE
  N0                       148                         353
  N1                       126                         224
  N2                        49                          68
  N3                        23                          52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D39V6, binary
                             cls
clus                            0   1
  DEL PEAK 10(6Q15) MUTATED   291   9
  DEL PEAK 10(6Q15) WILD-TYPE 588  12
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 10(6Q15) MUTATED    291    9
  DEL PEAK 10(6Q15) WILD-TYPE  588   12
   clus
vv  DEL PEAK 10(6Q15) MUTATED DEL PEAK 10(6Q15) WILD-TYPE
  0                       291                         588
  1                         9                          12
[1] 2 2
[1] FALSE
D39V7, binary
                             cls
clus                            0   1
  DEL PEAK 10(6Q15) MUTATED   350   3
  DEL PEAK 10(6Q15) WILD-TYPE 701   8
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 10(6Q15) MUTATED    350    3
  DEL PEAK 10(6Q15) WILD-TYPE  701    8
        clus
vv       DEL PEAK 10(6Q15) MUTATED DEL PEAK 10(6Q15) WILD-TYPE
  FEMALE                       350                         701
  MALE                           3                           8
[1] 2 2
[1] FALSE
                             vv
clus                          INFILTRATING CARCINOMA NOS
  DEL PEAK 10(6Q15) MUTATED                            0
  DEL PEAK 10(6Q15) WILD-TYPE                          1
                             vv
clus                          INFILTRATING DUCTAL CARCINOMA
  DEL PEAK 10(6Q15) MUTATED                             263
  DEL PEAK 10(6Q15) WILD-TYPE                           500
                             vv
clus                          INFILTRATING LOBULAR CARCINOMA
  DEL PEAK 10(6Q15) MUTATED                               52
  DEL PEAK 10(6Q15) WILD-TYPE                            140
                             vv
clus                          MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  DEL PEAK 10(6Q15) MUTATED                     2                     0
  DEL PEAK 10(6Q15) WILD-TYPE                   4                     4
                             vv
clus                          MIXED HISTOLOGY (PLEASE SPECIFY)
  DEL PEAK 10(6Q15) MUTATED                                 14
  DEL PEAK 10(6Q15) WILD-TYPE                               16
                             vv
clus                          MUCINOUS CARCINOMA OTHER  SPECIFY
  DEL PEAK 10(6Q15) MUTATED                    8             14
  DEL PEAK 10(6Q15) WILD-TYPE                  9             34
D39V8, multiclass
                                  clus
vv                                 DEL PEAK 10(6Q15) MUTATED
  INFILTRATING CARCINOMA NOS                               0
  INFILTRATING DUCTAL CARCINOMA                          263
  INFILTRATING LOBULAR CARCINOMA                          52
  MEDULLARY CARCINOMA                                      2
  METAPLASTIC CARCINOMA                                    0
  MIXED HISTOLOGY (PLEASE SPECIFY)                        14
  MUCINOUS CARCINOMA                                       8
  OTHER  SPECIFY                                          14
                                  clus
vv                                 DEL PEAK 10(6Q15) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                 1
  INFILTRATING DUCTAL CARCINOMA                            500
  INFILTRATING LOBULAR CARCINOMA                           140
  MEDULLARY CARCINOMA                                        4
  METAPLASTIC CARCINOMA                                      4
  MIXED HISTOLOGY (PLEASE SPECIFY)                          16
  MUCINOUS CARCINOMA                                         9
  OTHER  SPECIFY                                            34
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D39V9, binary
                             cls
clus                            0   1
  DEL PEAK 10(6Q15) MUTATED   106 247
  DEL PEAK 10(6Q15) WILD-TYPE 182 527
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 10(6Q15) MUTATED    106  247
  DEL PEAK 10(6Q15) WILD-TYPE  182  527
     clus
vv    DEL PEAK 10(6Q15) MUTATED DEL PEAK 10(6Q15) WILD-TYPE
  NO                        106                         182
  YES                       247                         527
[1] 2 2
[1] FALSE
D39V10, continuous
                             vv
clus                          AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 10(6Q15) MUTATED                                  0    27
  DEL PEAK 10(6Q15) WILD-TYPE                                1    33
                             vv
clus                          BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 10(6Q15) MUTATED                          57   232
  DEL PEAK 10(6Q15) WILD-TYPE                       113   504
D39V11, multiclass
                                  clus
vv                                 DEL PEAK 10(6Q15) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                         0
  ASIAN                                                   27
  BLACK OR AFRICAN AMERICAN                               57
  WHITE                                                  232
                                  clus
vv                                 DEL PEAK 10(6Q15) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                           1
  ASIAN                                                     33
  BLACK OR AFRICAN AMERICAN                                113
  WHITE                                                    504
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D39V12, binary
                             cls
clus                            0   1
  DEL PEAK 10(6Q15) MUTATED    10 284
  DEL PEAK 10(6Q15) WILD-TYPE  28 574
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 10(6Q15) MUTATED     10  284
  DEL PEAK 10(6Q15) WILD-TYPE   28  574
                        clus
vv                       DEL PEAK 10(6Q15) MUTATED DEL PEAK 10(6Q15) WILD-TYPE
  HISPANIC OR LATINO                            10                          28
  NOT HISPANIC OR LATINO                       284                         574
[1] 2 2
[1] FALSE

Clustering(40) Variable = DEL PEAK 11(6Q27) MUTATION ANALYSIS
D40V1, survival
                             sevent
clus2                           0   1
  DEL PEAK 11(6Q27) MUTATED   326  38
  DEL PEAK 11(6Q27) WILD-TYPE 590  90
  DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE 
                        364                         680 
  DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE 
                         38                          90 
$`DEL PEAK 11(6Q27) MUTATED`
TCGA-3C-AAAU TCGA-3C-AALI TCGA-5T-A9QA TCGA-A1-A0SE TCGA-A1-A0SH TCGA-A1-A0SN 
      129.14       131.67         9.96        43.43        47.24        39.32 
TCGA-A1-A0SO TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04W TCGA-A2-A04X 
       28.01       121.94        73.84        87.25       101.98        55.43 
TCGA-A2-A0CK TCGA-A2-A0CQ TCGA-A2-A0CR TCGA-A2-A0CS TCGA-A2-A0CT TCGA-A2-A0CU 
      136.73        88.60       107.93        75.55        75.25         5.19 
TCGA-A2-A0CV TCGA-A2-A0CX TCGA-A2-A0D4 TCGA-A2-A0EO TCGA-A2-A0ET TCGA-A2-A0SV 
       98.99        56.81        25.22        80.28        35.05        27.12 
TCGA-A2-A0T0 TCGA-A2-A0T3 TCGA-A2-A0T4 TCGA-A2-A0T7 TCGA-A2-A0YJ TCGA-A2-A0YT 
       17.52        49.84        20.52        20.75        18.61        23.77 
TCGA-A2-A1FW TCGA-A2-A1FX TCGA-A2-A25A TCGA-A2-A25B TCGA-A2-A25C TCGA-A2-A25D 
       17.36        60.72       107.70        42.44        17.19        18.15 
TCGA-A2-A25E TCGA-A2-A3KD TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A4RW TCGA-A2-A4RY 
      105.34        39.65        32.75        49.48         7.30        21.30 
TCGA-A2-A4S1 TCGA-A7-A0CD TCGA-A7-A0CJ TCGA-A7-A0DA TCGA-A7-A13D TCGA-A7-A13F 
       26.96        38.30        30.61        35.67        31.73        25.15 
TCGA-A7-A26J TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J1 TCGA-A7-A426 TCGA-A7-A6VY 
       20.61        11.34        10.59        11.28        11.97         8.75 
TCGA-A8-A06O TCGA-A8-A06R TCGA-A8-A06T TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A075 
       13.02        17.98        53.06        26.01         1.02        17.03 
TCGA-A8-A076 TCGA-A8-A079 TCGA-A8-A07J TCGA-A8-A07R TCGA-A8-A07S TCGA-A8-A07W 
       53.98         9.01        12.00         8.98         7.99         9.99 
TCGA-A8-A08B TCGA-A8-A08G TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08R TCGA-A8-A097 
       38.01        19.96        12.00        37.05         0.99        12.00 
TCGA-A8-A09A TCGA-A8-A09C TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K TCGA-A8-A09R 
        9.99         1.02        49.05        45.07        29.98         8.98 
TCGA-A8-A09T TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A7 TCGA-A8-A0A9 TCGA-AC-A23G 
       19.04        13.02        21.04         0.99        27.02        10.85 
TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A3BB TCGA-AC-A3OD TCGA-AC-A3W5 TCGA-AC-A5XS 
       38.53        99.35        32.45        14.83        16.57         1.55 
TCGA-AC-A8OP TCGA-AC-A8OR TCGA-AN-A041 TCGA-AN-A04C TCGA-AN-A04D TCGA-AN-A0AM 
       20.19         1.32         0.23         1.78         1.71         0.16 
TCGA-AN-A0AS TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FV TCGA-AN-A0FX TCGA-AN-A0FZ 
        0.33         5.65         7.96         0.33         0.33         0.33 
TCGA-AN-A0XN TCGA-AN-A0XW TCGA-AO-A03L TCGA-AO-A03N TCGA-AO-A03R TCGA-AO-A03T 
        0.33         5.59        80.28        66.77        68.75        47.87 
TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J6 TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0JG 
       32.78        21.40        37.48        20.32        22.36        26.24 
TCGA-AO-A0JI TCGA-AO-A0JJ TCGA-AO-A0JL TCGA-AO-A124 TCGA-AO-A1KT TCGA-AQ-A04L 
       50.24        62.04        55.33       102.58        17.79       130.09 
TCGA-AQ-A54N TCGA-AQ-A54O TCGA-AQ-A7U7 TCGA-AR-A0TP TCGA-AR-A0TQ TCGA-AR-A0TR 
        2.56        32.91        19.20       111.32        73.64         5.26 
TCGA-AR-A0TW TCGA-AR-A0TZ TCGA-AR-A0U2 TCGA-AR-A0U3 TCGA-AR-A1AU TCGA-AR-A1AY 
       98.93       107.24        83.87       114.02        76.21        33.73 
TCGA-AR-A24K TCGA-AR-A24P TCGA-AR-A24Q TCGA-AR-A24R TCGA-AR-A24T TCGA-AR-A24V 
       50.89         2.76       104.28        87.22        76.01        85.35 
TCGA-AR-A251 TCGA-AR-A252 TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LO TCGA-AR-A5QQ 
       78.48        73.18        58.92        93.83        39.39        10.59 
TCGA-B6-A0IA TCGA-B6-A0IJ TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RO TCGA-B6-A0RS 
      220.90       176.98       211.56        68.45       162.05       100.70 
TCGA-B6-A0RU TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0WY TCGA-B6-A0X1 
      131.21        97.48       188.68        79.63       113.79       186.48 
TCGA-B6-A1KC TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A401 TCGA-B6-A408 TCGA-B6-A40C 
       43.59       139.17       170.17        85.35        68.12        71.15 
TCGA-BH-A0AU TCGA-BH-A0B0 TCGA-BH-A0B2 TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B5 
       24.53        46.95        40.83        39.55        39.16        48.36 
TCGA-BH-A0BD TCGA-BH-A0BF TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BM TCGA-BH-A0BO 
       18.21        25.71        24.85        21.70        61.68        35.67 
TCGA-BH-A0BP TCGA-BH-A0BQ TCGA-BH-A0BT TCGA-BH-A0BW TCGA-BH-A0BZ TCGA-BH-A0C0 
       48.69        27.19        45.57        11.67        49.05        41.75 
TCGA-BH-A0C3 TCGA-BH-A0DE TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DL TCGA-BH-A0DP 
       48.13        31.17        38.01        22.13        48.23        15.65 
TCGA-BH-A0H0 TCGA-BH-A0H7 TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HW TCGA-BH-A0HX 
       15.16        23.08        52.96        26.50        51.32        27.25 
TCGA-BH-A0HY TCGA-BH-A0W3 TCGA-BH-A0WA TCGA-BH-A18F TCGA-BH-A18I TCGA-BH-A18K 
       50.79        23.93        23.05         8.81         7.23        90.84 
TCGA-BH-A18L TCGA-BH-A18R TCGA-BH-A18S TCGA-BH-A18V TCGA-BH-A1EO TCGA-BH-A1ES 
       26.66        37.55        66.05        51.16        91.99       113.82 
TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1F2 TCGA-BH-A1F5 TCGA-BH-A1FC TCGA-BH-A1FD 
       42.28        12.00        31.53        89.16       114.15        33.17 
TCGA-BH-A1FE TCGA-BH-A1FM TCGA-BH-A201 TCGA-BH-A42V TCGA-BH-A8FZ TCGA-C8-A12L 
       74.73        45.63        28.14         8.94        18.87        11.93 
TCGA-C8-A12M TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12U TCGA-C8-A12W 
       11.77        12.66        11.77        12.66        12.66        12.66 
TCGA-C8-A12X TCGA-C8-A134 TCGA-C8-A137 TCGA-C8-A1HG TCGA-C8-A26Y TCGA-C8-A26Z 
       12.66         1.12         4.11        11.34         0.43         8.28 
TCGA-C8-A273 TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A8HP TCGA-C8-A8HR TCGA-C8-A9FZ 
        9.67        12.20         0.99        13.02        13.41        19.46 
TCGA-D8-A140 TCGA-D8-A145 TCGA-D8-A147 TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JD 
       13.25        13.48        19.20        18.71        15.78        18.15 
TCGA-D8-A1JE TCGA-D8-A1JG TCGA-D8-A1JI TCGA-D8-A1JL TCGA-D8-A1XA TCGA-D8-A1XB 
       18.90        12.03        18.97        20.09        27.58        18.15 
TCGA-D8-A1XF TCGA-D8-A1XL TCGA-D8-A1XO TCGA-D8-A1XQ TCGA-D8-A1XT TCGA-D8-A1XU 
       15.22        19.92        15.55        16.41         6.35        12.99 
TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y3 TCGA-D8-A27M TCGA-D8-A27R TCGA-D8-A27T 
       15.52         9.93        14.14        13.48        10.09        13.08 
TCGA-D8-A27W TCGA-D8-A73W TCGA-E2-A107 TCGA-E2-A109 TCGA-E2-A10F TCGA-E2-A14T 
       12.26         8.02        34.42        46.59        28.87        33.30 
TCGA-E2-A14V TCGA-E2-A14Z TCGA-E2-A152 TCGA-E2-A153 TCGA-E2-A158 TCGA-E2-A15E 
       34.26        18.51        27.12        23.24        14.79        20.71 
TCGA-E2-A15F TCGA-E2-A15H TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A1AZ 
       21.63        12.92        19.56        17.06        14.07        60.53 
TCGA-E2-A1B0 TCGA-E2-A1BC TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IL TCGA-E2-A1L8 
       53.62        16.47        17.10        38.30         3.88        39.62 
TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LG TCGA-E2-A1LH TCGA-E2-A1LI 
       24.59        40.47        28.90        18.87       106.75       102.61 
TCGA-E2-A1LL TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N6 TCGA-E9-A1N8 TCGA-E9-A1NA 
       43.04        32.88        36.82        13.48        12.00        36.56 
TCGA-E9-A1NC TCGA-E9-A1NE TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R4 TCGA-E9-A1R6 
       39.55        35.77        11.90        28.27         6.12         2.76 
TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RF TCGA-E9-A1RH TCGA-E9-A1RI TCGA-E9-A229 
       32.09        32.09         6.58        34.59        35.64        13.32 
TCGA-E9-A22A TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A243 TCGA-E9-A248 TCGA-E9-A249 
       39.09        12.89        23.51        17.06         1.94         7.13 
TCGA-E9-A2JS TCGA-E9-A3X8 TCGA-E9-A54Y TCGA-E9-A5UO TCGA-E9-A5UP TCGA-EW-A1IX 
       29.72        15.72        23.84        13.81        14.40        39.72 
TCGA-EW-A1J1 TCGA-EW-A1J5 TCGA-EW-A1J6 TCGA-EW-A1P0 TCGA-EW-A1P5 TCGA-EW-A3E8 
       18.90        15.68        28.77        41.13        23.11        34.03 
TCGA-EW-A3U0 TCGA-EW-A424 TCGA-GM-A2DB TCGA-GM-A2DC TCGA-GM-A2DD TCGA-GM-A2DF 
       17.49        23.51        79.10        83.34        75.02        70.85 
TCGA-GM-A3XL TCGA-GM-A3XN TCGA-HN-A2NL TCGA-JL-A3YW TCGA-LD-A66U TCGA-LD-A7W6 
       69.30        66.38         2.60        11.84        21.24        13.28 
TCGA-LD-A9QF TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LL-A6FR TCGA-LL-A740 
       10.62        15.32        14.70        14.47        16.08        14.50 
TCGA-LL-A7SZ TCGA-LL-A8F5 TCGA-MS-A51U TCGA-OL-A5D6 TCGA-OL-A5DA TCGA-OL-A5S0 
       14.70        14.73        22.39        36.30        58.62        20.38 
TCGA-OL-A66L TCGA-OL-A66O TCGA-OL-A66P TCGA-OL-A6VO TCGA-OL-A6VQ TCGA-OL-A6VR 
       42.77        17.36        14.07        28.21        19.73        40.11 
TCGA-PE-A5DC TCGA-PE-A5DE TCGA-PL-A8LZ TCGA-S3-A6ZF TCGA-S3-A6ZG TCGA-S3-A6ZH 
       47.01        86.96         9.93        16.50        13.12        16.93 
TCGA-S3-AA10 TCGA-S3-AA12 TCGA-S3-AA14 TCGA-UU-A93S 
       15.39        15.35        14.96         3.81 

$`DEL PEAK 11(6Q27) WILD-TYPE`
TCGA-3C-AALJ TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT0 TCGA-5L-AAT1 TCGA-A1-A0SB 
       42.81        40.14        11.44        48.56        48.36         8.52 
TCGA-A1-A0SD TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SI TCGA-A1-A0SJ TCGA-A1-A0SK 
       14.37        48.10        14.27        20.88        13.68        31.79 
TCGA-A1-A0SM TCGA-A1-A0SP TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04P TCGA-A2-A04Q 
        7.96        19.20        18.21       104.81        18.02        78.41 
TCGA-A2-A04V TCGA-A2-A04Y TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP 
       63.12        36.13        99.12        24.79       114.81        92.48 
TCGA-A2-A0CW TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0EM 
      107.93        67.33        34.55        33.76        61.58       101.72 
TCGA-A2-A0EN TCGA-A2-A0EP TCGA-A2-A0EQ TCGA-A2-A0ER TCGA-A2-A0ES TCGA-A2-A0EU 
      134.40       107.61        79.76        74.40        72.00        34.29 
TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0EY TCGA-A2-A0ST TCGA-A2-A0SU 
       31.82        61.94        24.72        63.29        99.19        54.64 
TCGA-A2-A0SW TCGA-A2-A0SX TCGA-A2-A0SY TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T5 
       44.88        50.43        44.28        17.13         8.38        17.46 
TCGA-A2-A0T6 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YE TCGA-A2-A0YF TCGA-A2-A0YG 
       18.90        32.55        25.28        18.21        50.47        21.90 
TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A0YM TCGA-A2-A1FV 
       21.67        49.48        19.33        48.46        31.73        23.47 
TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G1 TCGA-A2-A1G4 TCGA-A2-A1G6 TCGA-A2-A259 
       22.45        20.25        19.20        19.56        16.47        52.47 
TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XU TCGA-A2-A3XX 
       10.59        20.88        33.93        83.01        29.98        47.31 
TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A3Y0 TCGA-A2-A4RX TCGA-A2-A4S0 TCGA-A2-A4S2 
       34.98        50.37        38.37        24.39        23.21        21.14 
TCGA-A2-A4S3 TCGA-A7-A0CE TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0D9 TCGA-A7-A0DB 
       21.90        35.31        34.29        35.47        37.45        33.11 
TCGA-A7-A0DC TCGA-A7-A13E TCGA-A7-A13G TCGA-A7-A13H TCGA-A7-A26E TCGA-A7-A26F 
       29.79        20.19        23.61        29.56        31.36        24.26 
TCGA-A7-A26G TCGA-A7-A26H TCGA-A7-A26I TCGA-A7-A2KD TCGA-A7-A3J0 TCGA-A7-A3RF 
       23.74        23.80        21.73        22.32        10.29        13.41 
TCGA-A7-A425 TCGA-A7-A4SA TCGA-A7-A4SB TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF 
       14.70        14.93        13.74        14.50        21.17        17.92 
TCGA-A7-A56D TCGA-A7-A5ZV TCGA-A7-A5ZW TCGA-A7-A5ZX TCGA-A7-A6VV TCGA-A7-A6VW 
       14.73        12.10        10.72        11.05        10.29         9.37 
TCGA-A7-A6VX TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06U TCGA-A8-A06X TCGA-A8-A07B 
       10.42        13.02         1.02        29.03        31.00        43.00 
TCGA-A8-A07E TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07L TCGA-A8-A07O 
       19.99        18.97        18.97        14.01        32.05         9.99 
TCGA-A8-A07P TCGA-A8-A07U TCGA-A8-A07Z TCGA-A8-A082 TCGA-A8-A084 TCGA-A8-A085 
       10.98        24.99        45.07        18.05        15.06        36.95 
TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08C TCGA-A8-A08F TCGA-A8-A08L TCGA-A8-A08O 
       13.02         0.99        28.96        33.01         9.99        31.00 
TCGA-A8-A08P TCGA-A8-A08S TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A08Z TCGA-A8-A091 
       31.00        33.01       112.08        43.00        40.01        33.01 
TCGA-A8-A092 TCGA-A8-A093 TCGA-A8-A095 TCGA-A8-A099 TCGA-A8-A09B TCGA-A8-A09D 
       30.97        17.95        41.98         9.99        12.00        50.04 
TCGA-A8-A09M TCGA-A8-A09N TCGA-A8-A09Q TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A09X 
       33.07         1.02        25.02        15.02         0.99        14.01 
TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23E 
       12.00        19.04        17.03        38.04         0.95         2.37 
TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2FB TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK 
        5.72         1.48        40.57        55.43        36.99        38.79 
TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A2QH TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3HN 
       26.04        50.70        33.04         0.92         2.27        16.31 
TCGA-AC-A3QP TCGA-AC-A3TN TCGA-AC-A3W6 TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A62V 
       22.19        14.99        19.79        23.24        24.79        11.44 
TCGA-AC-A62X TCGA-AC-A62Y TCGA-AC-A6IV TCGA-AC-A6IW TCGA-AC-A6IX TCGA-AC-A6NO 
       13.71        17.42        18.67        13.58        12.26         1.68 
TCGA-AC-A7VB TCGA-AC-A7VC TCGA-AC-A8OQ TCGA-AC-A8OS TCGA-AN-A03X TCGA-AN-A03Y 
        8.22         0.03         1.12         2.30         0.33         0.33 
TCGA-AN-A046 TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A0AJ TCGA-AN-A0AK TCGA-AN-A0AL 
        0.33         0.62         2.96         9.96         7.36         6.51 
TCGA-AN-A0AR TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FN 
        0.33         0.33         6.44         7.00         7.59         7.17 
TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FW TCGA-AN-A0FY TCGA-AN-A0XL TCGA-AN-A0XO 
        6.28         7.04         0.36         0.33         0.33        12.33 
TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AN-A0XV 
        0.30         0.33         0.33         0.33         0.33         5.33 
TCGA-AO-A03M TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J4 
       61.35        81.63        95.70        58.95        29.13        52.18 
TCGA-AO-A0J5 TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JC TCGA-AO-A0JD 
       26.04        53.03        21.53        50.70        50.86        72.00 
TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JM TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 
       76.77        21.37        71.80        99.25       108.72       106.78 
TCGA-AO-A129 TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A12E TCGA-AO-A12F 
      108.03        90.58        98.27        64.04        57.30        48.36 
TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KQ TCGA-AO-A1KR 
       41.62        28.37        14.73        82.62        61.87        70.39 
TCGA-AO-A1KS TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A0Y5 TCGA-AQ-A1H2 TCGA-AQ-A1H3 
        0.53        24.79        26.93         5.65        15.62        32.52 
TCGA-AR-A0TS TCGA-AR-A0TT TCGA-AR-A0TV TCGA-AR-A0TX TCGA-AR-A0TY TCGA-AR-A0U0 
       74.79        86.66        42.35        64.83        55.86        65.36 
TCGA-AR-A0U1 TCGA-AR-A0U4 TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AK 
      101.95        85.97        75.55        61.84        52.77        51.25 
TCGA-AR-A1AL TCGA-AR-A1AM TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AQ 
       48.82        76.11        43.73        43.56        39.98        43.07 
TCGA-AR-A1AR TCGA-AR-A1AS TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A24H 
       17.23        37.81        61.28        63.62        62.14       160.90 
TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24S TCGA-AR-A24U 
       94.22        96.89        78.51        84.20        97.84        53.36 
TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A254 TCGA-AR-A2LE 
       50.96        83.77        79.00        89.00        72.76       143.21 
TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LL TCGA-AR-A2LM TCGA-AR-A2LN 
       20.25        62.86        54.21        66.15        52.11        38.17 
TCGA-AR-A2LQ TCGA-AR-A2LR TCGA-AR-A5QM TCGA-AR-A5QN TCGA-AR-A5QP TCGA-B6-A0I1 
       40.54        20.38        54.74        16.04        20.45        77.62 
TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0I9 TCGA-B6-A0IB TCGA-B6-A0IC TCGA-B6-A0IE 
      143.38       149.59        12.13       129.57        50.70        65.72 
TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IO 
      146.50       112.37        18.77       126.12        84.59       110.14 
TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RL TCGA-B6-A0RM 
      110.93       140.88       189.01       234.28        81.17        78.02 
TCGA-B6-A0RN TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RV TCGA-B6-A0WW 
      172.96       102.77       140.48        89.46       157.41        18.35 
TCGA-B6-A0WX TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 
       21.47       129.57       129.70        28.27        68.94        58.88 
TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A402 TCGA-B6-A40B TCGA-BH-A0AV TCGA-BH-A0AW 
      101.52        73.51        74.99       103.63        59.84        20.45 
TCGA-BH-A0AY TCGA-BH-A0AZ TCGA-BH-A0B6 TCGA-BH-A0B7 TCGA-BH-A0B9 TCGA-BH-A0BA 
       25.55        28.50        56.94        56.98        51.68        37.22 
TCGA-BH-A0BC TCGA-BH-A0BL TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BV TCGA-BH-A0C1 
       32.02        44.05        53.69        53.95        49.94        44.02 
TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DG TCGA-BH-A0DK TCGA-BH-A0DO TCGA-BH-A0DQ 
       42.90        45.83        23.44        13.91        17.26         3.22 
TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E0 
        2.56        38.47        67.86        47.41        16.27         4.41 
TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E6 TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EA 
       15.68        14.30         9.63        44.81        46.19        32.58 
TCGA-BH-A0EB TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H3 
       24.49        31.00        24.43        30.35        10.78        37.78 
TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H9 TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HO 
       35.51        24.56        41.00        20.38         5.85         2.50 
TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0RX TCGA-BH-A0W4 TCGA-BH-A0W5 
       13.61        36.85        12.89         5.59        24.95        42.35 
TCGA-BH-A0W7 TCGA-BH-A18G TCGA-BH-A18J TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P 
       44.81         2.01        20.12        72.56        37.74        30.28 
TCGA-BH-A18Q TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A1EN TCGA-BH-A1ET TCGA-BH-A1EW 
       55.63         7.36        51.39        69.93        82.85        55.69 
TCGA-BH-A1EX TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F6 TCGA-BH-A1F8 TCGA-BH-A1FB 
       49.58        17.69        25.81        97.48        24.66       120.62 
TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FN TCGA-BH-A1FR 
      122.89        36.92        63.35        55.00        72.07       144.59 
TCGA-BH-A1FU TCGA-BH-A202 TCGA-BH-A203 TCGA-BH-A204 TCGA-BH-A208 TCGA-BH-A209 
       72.07        26.14        38.60        83.31        57.83       130.16 
TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A5IZ 
       10.65         6.44        20.12        10.52       109.28        18.64 
TCGA-BH-A5J0 TCGA-BH-A6R8 TCGA-BH-A6R9 TCGA-BH-A8FY TCGA-BH-A8G0 TCGA-BH-AB28 
       23.51         9.63         5.26         9.70        21.76         9.44 
TCGA-C8-A12N TCGA-C8-A12V TCGA-C8-A12Z TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A132 
       11.77        12.66         0.39         3.16         2.24         1.87 
TCGA-C8-A135 TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HI TCGA-C8-A1HJ 
        1.05         4.08        12.33        10.92        11.28         0.16 
TCGA-C8-A1HK TCGA-C8-A1HL TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A26V TCGA-C8-A26W 
       12.03        10.42         2.30         3.25         0.30         0.23 
TCGA-C8-A26X TCGA-C8-A274 TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A3M7 TCGA-C8-A3M8 
        0.36         9.53         0.03         9.50         0.03         0.23 
TCGA-C8-A8HQ TCGA-D8-A13Y TCGA-D8-A13Z TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A143 
       12.49        11.90        20.88        20.58        13.97        14.17 
TCGA-D8-A146 TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JF TCGA-D8-A1JH 
       21.14        14.17        17.49        16.50        12.03        14.01 
TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1JP TCGA-D8-A1JS 
       20.09        20.12        19.40        20.38        21.01        12.20 
TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X7 TCGA-D8-A1X8 
       13.32        14.70        18.58        17.79        16.73        25.74 
TCGA-D8-A1X9 TCGA-D8-A1XC TCGA-D8-A1XD TCGA-D8-A1XG TCGA-D8-A1XJ TCGA-D8-A1XK 
       23.90        12.39        17.16        14.73        21.83        14.50 
TCGA-D8-A1XM TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XV TCGA-D8-A1XW TCGA-D8-A1XY 
       17.69        15.85        16.31        15.16        12.66        16.54 
TCGA-D8-A1XZ TCGA-D8-A1Y2 TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27G TCGA-D8-A27H 
       15.32        14.24        17.42        16.04        13.45        13.05 
TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27V 
       14.43         9.44        16.41         4.80         0.76        12.53 
TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-D8-A73U TCGA-D8-A73X TCGA-E2-A105 
       33.37        18.51        21.67        16.18        12.10        43.00 
TCGA-E2-A108 TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10C TCGA-E2-A10E TCGA-E2-A14N 
       27.52        40.41        37.51        40.11        28.44        47.15 
TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14Q TCGA-E2-A14R TCGA-E2-A14S TCGA-E2-A14U 
       44.68        40.96        38.24        38.60        33.17        43.33 
TCGA-E2-A14W TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A150 TCGA-E2-A154 TCGA-E2-A155 
       32.02        31.96        28.60        25.41        19.43        21.04 
TCGA-E2-A156 TCGA-E2-A159 TCGA-E2-A15A TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15G 
       23.87        25.05        23.34        22.82        17.29        18.21 
TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15O 
       17.42        19.40         9.04        20.58        11.05        13.02 
TCGA-E2-A15T TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1IF 
       14.99        53.03        33.01        32.35        28.50        37.41 
TCGA-E2-A1IG TCGA-E2-A1IH TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IN 
       32.78        33.73        33.70        28.44        22.65        22.19 
TCGA-E2-A1IO TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L9 TCGA-E2-A1LK 
       20.98        11.08        54.18        27.42        19.66         8.75 
TCGA-E2-A2P5 TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A573 
       16.93         5.52        15.72         8.28        30.61        34.92 
TCGA-E2-A574 TCGA-E2-A576 TCGA-E2-A9RU TCGA-E9-A1N3 TCGA-E9-A1N9 TCGA-E9-A1ND 
       26.56        34.29        12.85        34.82        13.12        12.59 
TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1NI TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R5 
       35.24        25.84         9.86        34.95         2.56         3.02 
TCGA-E9-A1R7 TCGA-E9-A1RC TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RG TCGA-E9-A226 
       21.21        40.24         1.12        34.65        21.27        34.13 
TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A22B TCGA-E9-A22D TCGA-E9-A22H TCGA-E9-A244 
       32.05        12.53        22.75        41.03        20.71         0.69 
TCGA-E9-A247 TCGA-E9-A24A TCGA-E9-A295 TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 
       27.22        24.56         0.72         0.76        26.07        18.41 
TCGA-E9-A3QA TCGA-E9-A54X TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A6HE TCGA-EW-A1IW 
       30.18        12.33        14.70         0.79        15.39        12.20 
TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1OV TCGA-EW-A1OW 
        8.48        18.21        13.25        16.57        25.94        22.82 
TCGA-EW-A1OX TCGA-EW-A1OY TCGA-EW-A1OZ TCGA-EW-A1P1 TCGA-EW-A1P3 TCGA-EW-A1P4 
       29.95        29.85        40.41        39.78        52.96        29.82 
TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1P8 TCGA-EW-A1PA TCGA-EW-A1PB TCGA-EW-A1PC 
       18.48        30.08         7.86        18.90        19.99         6.15 
TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PF TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FR 
       13.94        10.52        14.43        34.55        19.96        55.00 
TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A2FW TCGA-EW-A423 TCGA-GI-A2C8 TCGA-GI-A2C9 
       52.73        25.91        22.09        10.16         7.40       109.87 
TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DH TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL 
       59.57       216.76        72.10        85.15        86.96       115.69 
TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A2DO TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG 
      106.06       101.62        85.35       110.50        38.20        43.73 
TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2OB TCGA-JL-A3YX TCGA-LD-A74U 
       72.03        13.55        18.12        62.43        11.57        13.22 
TCGA-LD-A7W5 TCGA-LL-A440 TCGA-LL-A441 TCGA-LL-A442 TCGA-LL-A50Y TCGA-LL-A5YL 
        7.10        24.95        11.44        10.95        25.05        17.06 
TCGA-LL-A5YP TCGA-LL-A6FP TCGA-LL-A6FQ TCGA-LL-A73Y TCGA-LL-A73Z TCGA-LL-A7T0 
       14.79        22.26         2.63        15.68         7.46        12.36 
TCGA-LL-A9Q3 TCGA-LQ-A4E4 TCGA-OK-A5Q2 TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5RU 
       14.07        27.91         2.10        58.52        31.99        40.08 
TCGA-OL-A5RV TCGA-OL-A5RW TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A66H 
       34.92        36.36        28.87        24.72        22.32        26.70 
TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66K TCGA-OL-A66N TCGA-OL-A97C TCGA-PE-A5DD 
       23.47        65.62        41.92        26.04         8.91        64.21 
TCGA-PL-A8LX TCGA-PL-A8LY TCGA-S3-AA0Z TCGA-S3-AA11 TCGA-S3-AA15 TCGA-S3-AA17 
        0.16         0.26        16.80        13.84        13.84        13.94 
TCGA-UL-AAZ6 TCGA-W8-A86G TCGA-WT-AB41 TCGA-WT-AB44 TCGA-XX-A899 TCGA-XX-A89A 
       17.03        11.41        52.96        29.03        15.35        16.04 
TCGA-Z7-A8R5 TCGA-Z7-A8R6 
      108.07       107.05 

  DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE 
                       0.16                        0.03 
  DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE 
                     220.90                      234.28 
  DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE 
                      24.23                       24.56 
[1] "0.2 - 220.9 (24.2)" "0.0 - 234.3 (24.6)"
[1] "hr=" "1.4"
D40V2, continuous
                             vv
clus                          STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  DEL PEAK 11(6Q27) MUTATED        30       28        2        0       124
  DEL PEAK 11(6Q27) WILD-TYPE      59       53        6        3       229
                             vv
clus                          STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  DEL PEAK 11(6Q27) MUTATED          91         0         56         12
  DEL PEAK 11(6Q27) WILD-TYPE       154         2         94         17
                             vv
clus                          STAGE IIIC STAGE IV STAGE TIS STAGE X
  DEL PEAK 11(6Q27) MUTATED           13        7         0       6
  DEL PEAK 11(6Q27) WILD-TYPE         50       13         1       7
D40V3, multiclass
            clus
vv           DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE
  STAGE I                           30                          59
  STAGE IA                          28                          53
  STAGE IB                           2                           6
  STAGE II                           0                           3
  STAGE IIA                        124                         229
  STAGE IIB                         91                         154
  STAGE III                          0                           2
  STAGE IIIA                        56                          94
  STAGE IIIB                        12                          17
  STAGE IIIC                        13                          50
  STAGE IV                           7                          13
  STAGE TIS                          0                           1
  STAGE X                            6                           7
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                           T1  T2  T3  T4
  DEL PEAK 11(6Q27) MUTATED    97 217  39  15
  DEL PEAK 11(6Q27) WILD-TYPE 175 399  91  25
D40V4, multiclass
    clus
vv   DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE
  T1                        97                         175
  T2                       217                         399
  T3                        39                          91
  T4                        15                          25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                           N0  N1  N2  N3
  DEL PEAK 11(6Q27) MUTATED   167 134  46  17
  DEL PEAK 11(6Q27) WILD-TYPE 334 216  71  58
D40V5, multiclass
    clus
vv   DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE
  N0                       167                         334
  N1                       134                         216
  N2                        46                          71
  N3                        17                          58
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D40V6, binary
                             cls
clus                            0   1
  DEL PEAK 11(6Q27) MUTATED   314   8
  DEL PEAK 11(6Q27) WILD-TYPE 565  13
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 11(6Q27) MUTATED    314    8
  DEL PEAK 11(6Q27) WILD-TYPE  565   13
   clus
vv  DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE
  0                       314                         565
  1                         8                          13
[1] 2 2
[1] FALSE
D40V7, binary
                             cls
clus                            0   1
  DEL PEAK 11(6Q27) MUTATED   368   2
  DEL PEAK 11(6Q27) WILD-TYPE 683   9
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 11(6Q27) MUTATED    368    2
  DEL PEAK 11(6Q27) WILD-TYPE  683    9
        clus
vv       DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE
  FEMALE                       368                         683
  MALE                           2                           9
[1] 2 2
[1] FALSE
                             vv
clus                          INFILTRATING CARCINOMA NOS
  DEL PEAK 11(6Q27) MUTATED                            0
  DEL PEAK 11(6Q27) WILD-TYPE                          1
                             vv
clus                          INFILTRATING DUCTAL CARCINOMA
  DEL PEAK 11(6Q27) MUTATED                             278
  DEL PEAK 11(6Q27) WILD-TYPE                           485
                             vv
clus                          INFILTRATING LOBULAR CARCINOMA
  DEL PEAK 11(6Q27) MUTATED                               53
  DEL PEAK 11(6Q27) WILD-TYPE                            139
                             vv
clus                          MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  DEL PEAK 11(6Q27) MUTATED                     2                     1
  DEL PEAK 11(6Q27) WILD-TYPE                   4                     3
                             vv
clus                          MIXED HISTOLOGY (PLEASE SPECIFY)
  DEL PEAK 11(6Q27) MUTATED                                 12
  DEL PEAK 11(6Q27) WILD-TYPE                               18
                             vv
clus                          MUCINOUS CARCINOMA OTHER  SPECIFY
  DEL PEAK 11(6Q27) MUTATED                    8             15
  DEL PEAK 11(6Q27) WILD-TYPE                  9             33
D40V8, multiclass
                                  clus
vv                                 DEL PEAK 11(6Q27) MUTATED
  INFILTRATING CARCINOMA NOS                               0
  INFILTRATING DUCTAL CARCINOMA                          278
  INFILTRATING LOBULAR CARCINOMA                          53
  MEDULLARY CARCINOMA                                      2
  METAPLASTIC CARCINOMA                                    1
  MIXED HISTOLOGY (PLEASE SPECIFY)                        12
  MUCINOUS CARCINOMA                                       8
  OTHER  SPECIFY                                          15
                                  clus
vv                                 DEL PEAK 11(6Q27) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                 1
  INFILTRATING DUCTAL CARCINOMA                            485
  INFILTRATING LOBULAR CARCINOMA                           139
  MEDULLARY CARCINOMA                                        4
  METAPLASTIC CARCINOMA                                      3
  MIXED HISTOLOGY (PLEASE SPECIFY)                          18
  MUCINOUS CARCINOMA                                         9
  OTHER  SPECIFY                                            33
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D40V9, binary
                             cls
clus                            0   1
  DEL PEAK 11(6Q27) MUTATED   115 255
  DEL PEAK 11(6Q27) WILD-TYPE 173 519
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 11(6Q27) MUTATED    115  255
  DEL PEAK 11(6Q27) WILD-TYPE  173  519
     clus
vv    DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE
  NO                        115                         173
  YES                       255                         519
[1] 2 2
[1] FALSE
D40V10, continuous
                             vv
clus                          AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 11(6Q27) MUTATED                                  0    25
  DEL PEAK 11(6Q27) WILD-TYPE                                1    35
                             vv
clus                          BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 11(6Q27) MUTATED                          58   251
  DEL PEAK 11(6Q27) WILD-TYPE                       112   485
D40V11, multiclass
                                  clus
vv                                 DEL PEAK 11(6Q27) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                         0
  ASIAN                                                   25
  BLACK OR AFRICAN AMERICAN                               58
  WHITE                                                  251
                                  clus
vv                                 DEL PEAK 11(6Q27) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                           1
  ASIAN                                                     35
  BLACK OR AFRICAN AMERICAN                                112
  WHITE                                                    485
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D40V12, binary
                             cls
clus                            0   1
  DEL PEAK 11(6Q27) MUTATED     9 301
  DEL PEAK 11(6Q27) WILD-TYPE  29 557
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 11(6Q27) MUTATED      9  301
  DEL PEAK 11(6Q27) WILD-TYPE   29  557
                        clus
vv                       DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE
  HISPANIC OR LATINO                             9                          29
  NOT HISPANIC OR LATINO                       301                         557
[1] 2 2
[1] FALSE

Clustering(41) Variable = DEL PEAK 12(7P22.3) MUTATION ANALYSIS
D41V1, survival
                               sevent
clus2                             0   1
  DEL PEAK 12(7P22.3) MUTATED   116  17
  DEL PEAK 12(7P22.3) WILD-TYPE 800 111
  DEL PEAK 12(7P22.3) MUTATED DEL PEAK 12(7P22.3) WILD-TYPE 
                          133                           911 
  DEL PEAK 12(7P22.3) MUTATED DEL PEAK 12(7P22.3) WILD-TYPE 
                           17                           111 
$`DEL PEAK 12(7P22.3) MUTATED`
TCGA-5L-AAT1 TCGA-5T-A9QA TCGA-A1-A0SK TCGA-A1-A0SO TCGA-A2-A04T TCGA-A2-A04U 
       48.36         9.96        31.79        28.01        73.84        87.25 
TCGA-A2-A0CM TCGA-A2-A0CT TCGA-A2-A0CW TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D4 
       24.79        75.25       107.93        67.33        34.55        25.22 
TCGA-A2-A0EQ TCGA-A2-A0ET TCGA-A2-A0SX TCGA-A2-A0T3 TCGA-A2-A0YT TCGA-A2-A1G1 
       79.76        35.05        50.43        49.84        23.77        19.20 
TCGA-A2-A3Y0 TCGA-A2-A4RX TCGA-A7-A0CD TCGA-A7-A0CJ TCGA-A7-A0DA TCGA-A7-A0DC 
       38.37        24.39        38.30        30.61        35.67        29.79 
TCGA-A7-A13G TCGA-A7-A26I TCGA-A7-A2KD TCGA-A7-A6VX TCGA-A8-A06O TCGA-A8-A06Q 
       23.61        21.73        22.32        10.42        13.02         1.02 
TCGA-A8-A06U TCGA-A8-A079 TCGA-A8-A07B TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07R 
       29.03         9.01        43.00        18.97        14.01         8.98 
TCGA-A8-A08B TCGA-A8-A08F TCGA-A8-A08I TCGA-A8-A08L TCGA-A8-A08S TCGA-A8-A091 
       38.01        33.01        12.00         9.99        33.01        33.01 
TCGA-A8-A092 TCGA-A8-A09K TCGA-A8-A09M TCGA-AC-A23E TCGA-AC-A62X TCGA-AN-A04C 
       30.97        29.98        33.07         2.37        13.71         1.78 
TCGA-AN-A0FY TCGA-AN-A0FZ TCGA-AN-A0XS TCGA-AO-A03L TCGA-AO-A0J4 TCGA-AO-A0J7 
        0.33         0.33         0.33        80.28        52.18        20.32 
TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A1KS TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A54N 
       48.36        41.62         0.53        26.93       130.09         2.56 
TCGA-AR-A0TV TCGA-AR-A0TW TCGA-AR-A0U4 TCGA-AR-A1AQ TCGA-AR-A24Q TCGA-AR-A255 
       42.35        98.93        85.97        43.07       104.28        58.92 
TCGA-AR-A256 TCGA-AR-A2LK TCGA-B6-A0I9 TCGA-B6-A0IJ TCGA-B6-A0IQ TCGA-B6-A0RG 
       93.83        54.21        12.13       176.98       140.88        68.45 
TCGA-B6-A0RS TCGA-B6-A0WY TCGA-B6-A0X1 TCGA-B6-A0X7 TCGA-B6-A1KN TCGA-B6-A402 
      100.70       113.79       186.48        58.88       139.17        74.99 
TCGA-B6-A408 TCGA-BH-A0B2 TCGA-BH-A0BG TCGA-BH-A0BL TCGA-BH-A0BW TCGA-BH-A0C7 
       68.12        40.83        24.85        44.05        11.67        42.90 
TCGA-BH-A0DZ TCGA-BH-A0E6 TCGA-BH-A18F TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1EW 
       16.27         9.63         8.81        51.39        51.16        55.69 
TCGA-BH-A1F8 TCGA-BH-A208 TCGA-C8-A137 TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A274 
       24.66        57.83         4.11         0.43         8.28         9.53 
TCGA-C8-A27B TCGA-D8-A147 TCGA-D8-A1J9 TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JJ 
        0.99        19.20        17.49        18.15        18.90        20.09 
TCGA-D8-A1JM TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XK TCGA-D8-A1XQ TCGA-D8-A1XW 
       19.40        27.58        18.15        14.50        16.41        12.66 
TCGA-D8-A1Y3 TCGA-D8-A27M TCGA-E2-A105 TCGA-E2-A158 TCGA-E2-A15H TCGA-E2-A15S 
       14.14        13.48        43.00        14.79        12.92        14.07 
TCGA-E2-A1AZ TCGA-E2-A1L7 TCGA-E9-A1NF TCGA-E9-A1RE TCGA-E9-A22G TCGA-E9-A244 
       60.53        27.42        35.24        34.65        23.51         0.69 
TCGA-E9-A247 TCGA-E9-A248 TCGA-E9-A54Y TCGA-E9-A5FL TCGA-E9-A5UP TCGA-EW-A1J6 
       27.22         1.94        23.84         0.79        14.40        28.77 
TCGA-EW-A1OW TCGA-GI-A2C9 TCGA-GM-A2DH TCGA-GM-A3XL TCGA-LL-A5YP TCGA-LL-A7T0 
       22.82       109.87        72.10        69.30        14.79        12.36 
TCGA-S3-A6ZG 
       13.12 

$`DEL PEAK 12(7P22.3) WILD-TYPE`
TCGA-3C-AAAU TCGA-3C-AALI TCGA-3C-AALJ TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT0 
      129.14       131.67        42.81        40.14        11.44        48.56 
TCGA-A1-A0SB TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH 
        8.52        14.37        43.43        48.10        14.27        47.24 
TCGA-A1-A0SI TCGA-A1-A0SJ TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SP TCGA-A1-A0SQ 
       20.88        13.68         7.96        39.32        19.20        18.21 
TCGA-A2-A04N TCGA-A2-A04P TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04V TCGA-A2-A04W 
      104.81        18.02        78.41       121.94        63.12       101.98 
TCGA-A2-A04X TCGA-A2-A04Y TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CO TCGA-A2-A0CP 
       55.43        36.13       136.73        99.12       114.81        92.48 
TCGA-A2-A0CQ TCGA-A2-A0CR TCGA-A2-A0CS TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CX 
       88.60       107.93        75.55         5.19        98.99        56.81 
TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP 
       33.76        61.58       101.72       134.40        80.28       107.61 
TCGA-A2-A0ER TCGA-A2-A0ES TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX 
       74.40        72.00        34.29        31.82        61.94        24.72 
TCGA-A2-A0EY TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0SY 
       63.29        99.19        54.64        27.12        44.88        44.28 
TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T4 TCGA-A2-A0T5 TCGA-A2-A0T6 
       17.52        17.13         8.38        20.52        17.46        18.90 
TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YE TCGA-A2-A0YF TCGA-A2-A0YG 
       20.75        32.55        25.28        18.21        50.47        21.90 
TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A0YM 
       21.67        49.48        18.61        19.33        48.46        31.73 
TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1FX TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G4 
       23.47        17.36        60.72        22.45        20.25        19.56 
TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25A TCGA-A2-A25B TCGA-A2-A25C TCGA-A2-A25D 
       16.47        52.47       107.70        42.44        17.19        18.15 
TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD TCGA-A2-A3XS TCGA-A2-A3XT 
      105.34        10.59        20.88        39.65        33.93        83.01 
TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX TCGA-A2-A3XY TCGA-A2-A3XZ 
       29.98        32.75        49.48        47.31        34.98        50.37 
TCGA-A2-A4RW TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A2-A4S3 
        7.30        21.30        23.21        26.96        21.14        21.90 
TCGA-A7-A0CE TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0D9 TCGA-A7-A0DB TCGA-A7-A13D 
       35.31        34.29        35.47        37.45        33.11        31.73 
TCGA-A7-A13E TCGA-A7-A13F TCGA-A7-A13H TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26G 
       20.19        25.15        29.56        31.36        24.26        23.74 
TCGA-A7-A26H TCGA-A7-A26J TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3J1 
       23.80        20.61        11.34        10.59        10.29        11.28 
TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A426 TCGA-A7-A4SA TCGA-A7-A4SB TCGA-A7-A4SD 
       13.41        14.70        11.97        14.93        13.74        14.50 
TCGA-A7-A4SE TCGA-A7-A4SF TCGA-A7-A56D TCGA-A7-A5ZV TCGA-A7-A5ZW TCGA-A7-A5ZX 
       21.17        17.92        14.73        12.10        10.72        11.05 
TCGA-A7-A6VV TCGA-A7-A6VW TCGA-A7-A6VY TCGA-A8-A06P TCGA-A8-A06R TCGA-A8-A06T 
       10.29         9.37         8.75        13.02        17.98        53.06 
TCGA-A8-A06X TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A07E 
       31.00        26.01         1.02        17.03        53.98        19.99 
TCGA-A8-A07F TCGA-A8-A07J TCGA-A8-A07L TCGA-A8-A07O TCGA-A8-A07P TCGA-A8-A07S 
       18.97        12.00        32.05         9.99        10.98         7.99 
TCGA-A8-A07U TCGA-A8-A07W TCGA-A8-A07Z TCGA-A8-A082 TCGA-A8-A084 TCGA-A8-A085 
       24.99         9.99        45.07        18.05        15.06        36.95 
TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08C TCGA-A8-A08G TCGA-A8-A08J TCGA-A8-A08O 
       13.02         0.99        28.96        19.96        37.05        31.00 
TCGA-A8-A08P TCGA-A8-A08R TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A08Z TCGA-A8-A093 
       31.00         0.99       112.08        43.00        40.01        17.95 
TCGA-A8-A095 TCGA-A8-A097 TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09C 
       41.98        12.00         9.99         9.99        12.00         1.02 
TCGA-A8-A09D TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09N TCGA-A8-A09Q TCGA-A8-A09R 
       50.04        49.05        45.07         1.02        25.02         8.98 
TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0A2 
       19.04        15.02         0.99        14.01        12.00        19.04 
TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A7 TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-A8-A0AD 
       13.02        21.04         0.99        27.02        17.03        38.04 
TCGA-AC-A23C TCGA-AC-A23G TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM 
        0.95        10.85         5.72         1.48        38.53        99.35 
TCGA-AC-A2FB TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2FO 
       40.57        55.43        36.99        38.79        26.04        50.70 
TCGA-AC-A2QH TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3HN TCGA-AC-A3OD 
       33.04         0.92         2.27        32.45        16.31        14.83 
TCGA-AC-A3QP TCGA-AC-A3TN TCGA-AC-A3W5 TCGA-AC-A3W6 TCGA-AC-A3YI TCGA-AC-A3YJ 
       22.19        14.99        16.57        19.79        23.24        24.79 
TCGA-AC-A5XS TCGA-AC-A62V TCGA-AC-A62Y TCGA-AC-A6IV TCGA-AC-A6IW TCGA-AC-A6IX 
        1.55        11.44        17.42        18.67        13.58        12.26 
TCGA-AC-A6NO TCGA-AC-A7VB TCGA-AC-A7VC TCGA-AC-A8OP TCGA-AC-A8OQ TCGA-AC-A8OR 
        1.68         8.22         0.03        20.19         1.12         1.32 
TCGA-AC-A8OS TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A041 TCGA-AN-A046 TCGA-AN-A049 
        2.30         0.33         0.33         0.23         0.33         0.62 
TCGA-AN-A04A TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AK TCGA-AN-A0AL TCGA-AN-A0AM 
        2.96         1.71         9.96         7.36         6.51         0.16 
TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FJ 
        0.33         0.33         0.33         6.44         5.65         7.96 
TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FV 
        7.00         7.59         7.17         6.28         7.04         0.33 
TCGA-AN-A0FW TCGA-AN-A0FX TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XP 
        0.36         0.33         0.33         0.33        12.33         0.30 
TCGA-AN-A0XR TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03M 
        0.33         0.33         0.33         5.33         5.59        61.35 
TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03U 
       66.77        81.63        95.70        68.75        47.87        58.95 
TCGA-AO-A03V TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J5 TCGA-AO-A0J6 TCGA-AO-A0J8 
       29.13        32.78        21.40        26.04        37.48        22.36 
TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JC TCGA-AO-A0JD TCGA-AO-A0JE 
       53.03        21.53        50.70        50.86        72.00        76.77 
TCGA-AO-A0JF TCGA-AO-A0JG TCGA-AO-A0JI TCGA-AO-A0JJ TCGA-AO-A0JL TCGA-AO-A0JM 
       21.37        26.24        50.24        62.04        55.33        71.80 
TCGA-AO-A124 TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 TCGA-AO-A129 TCGA-AO-A12A 
      102.58        99.25       108.72       106.78       108.03        90.58 
TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A12E TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP 
       98.27        64.04        57.30        28.37        14.73        82.62 
TCGA-AO-A1KQ TCGA-AO-A1KR TCGA-AO-A1KT TCGA-AQ-A04H TCGA-AQ-A0Y5 TCGA-AQ-A1H2 
       61.87        70.39        17.79        24.79         5.65        15.62 
TCGA-AQ-A1H3 TCGA-AQ-A54O TCGA-AQ-A7U7 TCGA-AR-A0TP TCGA-AR-A0TQ TCGA-AR-A0TR 
       32.52        32.91        19.20       111.32        73.64         5.26 
TCGA-AR-A0TS TCGA-AR-A0TT TCGA-AR-A0TX TCGA-AR-A0TY TCGA-AR-A0TZ TCGA-AR-A0U0 
       74.79        86.66        64.83        55.86       107.24        65.36 
TCGA-AR-A0U1 TCGA-AR-A0U2 TCGA-AR-A0U3 TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AJ 
      101.95        83.87       114.02        75.55        61.84        52.77 
TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AM TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AP 
       51.25        48.82        76.11        43.73        43.56        39.98 
TCGA-AR-A1AR TCGA-AR-A1AS TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A1AX 
       17.23        37.81        76.21        61.28        63.62        62.14 
TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24K TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24N 
       33.73       160.90        50.89        94.22        96.89        78.51 
TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24R TCGA-AR-A24S TCGA-AR-A24T TCGA-AR-A24U 
       84.20         2.76        87.22        97.84        76.01        53.36 
TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A251 
       85.35        50.96        83.77        79.00        89.00        78.48 
TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LL 
       73.18        72.76       143.21        20.25        62.86        66.15 
TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A2LR TCGA-AR-A5QM 
       52.11        38.17        39.39        40.54        20.38        54.74 
TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 
       16.04        20.45        10.59        77.62       143.38       149.59 
TCGA-B6-A0IA TCGA-B6-A0IB TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IH 
      220.90       129.57        50.70        65.72       146.50       112.37 
TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IO TCGA-B6-A0IP TCGA-B6-A0RE 
       18.77       126.12        84.59       110.14       110.93       211.56 
TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RL TCGA-B6-A0RM TCGA-B6-A0RN TCGA-B6-A0RO 
      189.01       234.28        81.17        78.02       172.96       162.05 
TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RU TCGA-B6-A0RV TCGA-B6-A0WS 
      102.77       140.48        89.46       131.21       157.41        97.48 
TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WZ TCGA-B6-A0X0 
      188.68        79.63        18.35        21.47       129.57       129.70 
TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A2IU 
       28.27        68.94        43.59       101.52        73.51       170.17 
TCGA-B6-A401 TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AU TCGA-BH-A0AV TCGA-BH-A0AW 
       85.35       103.63        71.15        24.53        59.84        20.45 
TCGA-BH-A0AY TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B5 
       25.55        28.50        46.95        39.55        39.16        48.36 
TCGA-BH-A0B6 TCGA-BH-A0B7 TCGA-BH-A0B9 TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BD 
       56.94        56.98        51.68        37.22        32.02        18.21 
TCGA-BH-A0BF TCGA-BH-A0BJ TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BP TCGA-BH-A0BQ 
       25.71        21.70        61.68        35.67        48.69        27.19 
TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0BZ TCGA-BH-A0C0 
       53.69        53.95        45.57        49.94        49.05        41.75 
TCGA-BH-A0C1 TCGA-BH-A0C3 TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH 
       44.02        48.13        45.83        31.17        23.44        38.01 
TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DO TCGA-BH-A0DP TCGA-BH-A0DQ 
       22.13        13.91        48.23        17.26        15.65         3.22 
TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0E0 TCGA-BH-A0E1 
        2.56        38.47        67.86        47.41         4.41        15.68 
TCGA-BH-A0E2 TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EA TCGA-BH-A0EB TCGA-BH-A0EE 
       14.30        44.81        46.19        32.58        24.49        31.00 
TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 
       24.43        30.35        10.78        15.16        37.78        35.51 
TCGA-BH-A0H6 TCGA-BH-A0H7 TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HI 
       24.56        23.08        41.00        52.96        26.50        20.38 
TCGA-BH-A0HK TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW 
        5.85         2.50        13.61        36.85        12.89        51.32 
TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 
       27.25        50.79         5.59        23.93        24.95        42.35 
TCGA-BH-A0W7 TCGA-BH-A0WA TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18K 
       44.81        23.05         2.01         7.23        20.12        90.84 
TCGA-BH-A18L TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18R 
       26.66        72.56        37.74        30.28        55.63        37.55 
TCGA-BH-A18S TCGA-BH-A18T TCGA-BH-A1EN TCGA-BH-A1EO TCGA-BH-A1ES TCGA-BH-A1ET 
       66.05         7.36        69.93        91.99       113.82        82.85 
TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EX TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F2 
       42.28        12.00        49.58        17.69        25.81        31.53 
TCGA-BH-A1F5 TCGA-BH-A1F6 TCGA-BH-A1FB TCGA-BH-A1FC TCGA-BH-A1FD TCGA-BH-A1FE 
       89.16        97.48       120.62       114.15        33.17        74.73 
TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FM TCGA-BH-A1FN 
      122.89        36.92        63.35        55.00        45.63        72.07 
TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A203 TCGA-BH-A204 
      144.59        72.07        28.14        26.14        38.60        83.31 
TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U 
      130.16        10.65         6.44        20.12        10.52       109.28 
TCGA-BH-A42V TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-BH-A6R8 TCGA-BH-A6R9 TCGA-BH-A8FY 
        8.94        18.64        23.51         9.63         5.26         9.70 
TCGA-BH-A8FZ TCGA-BH-A8G0 TCGA-BH-AB28 TCGA-C8-A12L TCGA-C8-A12M TCGA-C8-A12N 
       18.87        21.76         9.44        11.93        11.77        11.77 
TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12U TCGA-C8-A12V TCGA-C8-A12W 
       12.66        11.77        12.66        12.66        12.66        12.66 
TCGA-C8-A12X TCGA-C8-A12Z TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A132 TCGA-C8-A134 
       12.66         0.39         3.16         2.24         1.87         1.12 
TCGA-C8-A135 TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HI 
        1.05         4.08        12.33        10.92        11.34        11.28 
TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HL TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A26V 
        0.16        12.03        10.42         2.30         3.25         0.30 
TCGA-C8-A26W TCGA-C8-A26X TCGA-C8-A273 TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A27A 
        0.23         0.36         9.67         0.03         9.50        12.20 
TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-C8-A8HP TCGA-C8-A8HQ TCGA-C8-A8HR TCGA-C8-A9FZ 
        0.03         0.23        13.02        12.49        13.41        19.46 
TCGA-D8-A13Y TCGA-D8-A13Z TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A143 
       11.90        20.88        13.25        20.58        13.97        14.17 
TCGA-D8-A145 TCGA-D8-A146 TCGA-D8-A1J8 TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JC 
       13.48        21.14        14.17        16.50        18.71        15.78 
TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JH TCGA-D8-A1JI TCGA-D8-A1JK TCGA-D8-A1JL 
       12.03        12.03        14.01        18.97        20.12        20.09 
TCGA-D8-A1JN TCGA-D8-A1JP TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X5 
       20.38        21.01        12.20        13.32        14.70        18.58 
TCGA-D8-A1X6 TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XC TCGA-D8-A1XD 
       17.79        16.73        25.74        23.90        12.39        17.16 
TCGA-D8-A1XF TCGA-D8-A1XG TCGA-D8-A1XJ TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO 
       15.22        14.73        21.83        19.92        17.69        15.55 
TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1XV TCGA-D8-A1XY 
       15.85        16.31         6.35        12.99        15.16        16.54 
TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 TCGA-D8-A27E TCGA-D8-A27F 
       15.32        15.52         9.93        14.24        17.42        16.04 
TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27N 
       13.45        13.05        14.43         9.44        16.41         4.80 
TCGA-D8-A27P TCGA-D8-A27R TCGA-D8-A27T TCGA-D8-A27V TCGA-D8-A27W TCGA-D8-A3Z5 
        0.76        10.09        13.08        12.53        12.26        33.37 
TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-D8-A73U TCGA-D8-A73W TCGA-D8-A73X TCGA-E2-A107 
       18.51        21.67        16.18         8.02        12.10        34.42 
TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10C TCGA-E2-A10E 
       27.52        46.59        40.41        37.51        40.11        28.44 
TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14Q TCGA-E2-A14R 
       28.87        47.15        44.68        40.96        38.24        38.60 
TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14W TCGA-E2-A14X 
       33.17        33.30        43.33        34.26        32.02        31.96 
TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A153 TCGA-E2-A154 
       28.60        18.51        25.41        27.12        23.24        19.43 
TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A159 TCGA-E2-A15A TCGA-E2-A15C TCGA-E2-A15D 
       21.04        23.87        25.05        23.34        22.82        17.29 
TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K 
       20.71        21.63        18.21        17.42        19.40         9.04 
TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15O TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A15T 
       20.58        11.05        13.02        19.56        17.06        14.99 
TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BC 
       53.62        53.03        33.01        32.35        28.50        16.47 
TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1IH TCGA-E2-A1II 
       17.10        38.30        37.41        32.78        33.73        33.70 
TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IO TCGA-E2-A1IU 
       28.44        22.65         3.88        22.19        20.98        11.08 
TCGA-E2-A1L6 TCGA-E2-A1L8 TCGA-E2-A1L9 TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LE 
       54.18        39.62        19.66        24.59        40.47        28.90 
TCGA-E2-A1LG TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A1LL TCGA-E2-A2P5 
       18.87       106.75       102.61         8.75        43.04        16.93 
TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A573 TCGA-E2-A574 
        5.52        15.72         8.28        30.61        34.92        26.56 
TCGA-E2-A576 TCGA-E2-A9RU TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N6 
       34.29        12.85        34.82        32.88        36.82        13.48 
TCGA-E9-A1N8 TCGA-E9-A1N9 TCGA-E9-A1NA TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NE 
       12.00        13.12        36.56        39.55        12.59        35.77 
TCGA-E9-A1NG TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R3 
       25.84         9.86        11.90        28.27        34.95         2.56 
TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RA TCGA-E9-A1RB 
        6.12         3.02         2.76        21.21        32.09        32.09 
TCGA-E9-A1RC TCGA-E9-A1RD TCGA-E9-A1RF TCGA-E9-A1RG TCGA-E9-A1RH TCGA-E9-A1RI 
       40.24         1.12         6.58        21.27        34.59        35.64 
TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22B 
       34.13        32.05        12.53        13.32        39.09        22.75 
TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A249 TCGA-E9-A24A 
       41.03        12.89        20.71        17.06         7.13        24.56 
TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3QA 
        0.72        29.72         0.76        26.07        18.41        30.18 
TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A5FK TCGA-E9-A5UO TCGA-E9-A6HE TCGA-EW-A1IW 
       15.72        12.33        14.70        13.81        15.39        12.20 
TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1J3 
       39.72         8.48        18.21        18.90        13.25        16.57 
TCGA-EW-A1J5 TCGA-EW-A1OV TCGA-EW-A1OX TCGA-EW-A1OY TCGA-EW-A1OZ TCGA-EW-A1P0 
       15.68        25.94        29.95        29.85        40.41        41.13 
TCGA-EW-A1P1 TCGA-EW-A1P3 TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A1P6 TCGA-EW-A1P7 
       39.78        52.96        29.82        23.11        18.48        30.08 
TCGA-EW-A1P8 TCGA-EW-A1PA TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A1PE 
        7.86        18.90        19.99         6.15        13.94        10.52 
TCGA-EW-A1PF TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FV 
       14.43        34.55        19.96        55.00        52.73        25.91 
TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A3U0 TCGA-EW-A423 TCGA-EW-A424 TCGA-GI-A2C8 
       22.09        34.03        17.49        10.16        23.51         7.40 
TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DC TCGA-GM-A2DD TCGA-GM-A2DF 
       59.57       216.76        79.10        83.34        75.02        70.85 
TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A2DO 
       85.15        86.96       115.69       106.06       101.62        85.35 
TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV 
      110.50        38.20        43.73        66.38        72.03        13.55 
TCGA-GM-A5PX TCGA-HN-A2NL TCGA-HN-A2OB TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LD-A66U 
       18.12         2.60        62.43        11.84        11.57        21.24 
TCGA-LD-A74U TCGA-LD-A7W5 TCGA-LD-A7W6 TCGA-LD-A9QF TCGA-LL-A440 TCGA-LL-A441 
       13.22         7.10        13.28        10.62        24.95        11.44 
TCGA-LL-A442 TCGA-LL-A50Y TCGA-LL-A5YL TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A5YO 
       10.95        25.05        17.06        15.32        14.70        14.47 
TCGA-LL-A6FP TCGA-LL-A6FQ TCGA-LL-A6FR TCGA-LL-A73Y TCGA-LL-A73Z TCGA-LL-A740 
       22.26         2.63        16.08        15.68         7.46        14.50 
TCGA-LL-A7SZ TCGA-LL-A8F5 TCGA-LL-A9Q3 TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 
       14.70        14.73        14.07        27.91        22.39         2.10 
TCGA-OL-A5D6 TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RU TCGA-OL-A5RV 
       36.30        58.52        31.99        58.62        40.08        34.92 
TCGA-OL-A5RW TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66H 
       36.36        28.87        24.72        22.32        20.38        26.70 
TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66K TCGA-OL-A66L TCGA-OL-A66N TCGA-OL-A66O 
       23.47        65.62        41.92        42.77        26.04        17.36 
TCGA-OL-A66P TCGA-OL-A6VO TCGA-OL-A6VQ TCGA-OL-A6VR TCGA-OL-A97C TCGA-PE-A5DC 
       14.07        28.21        19.73        40.11         8.91        47.01 
TCGA-PE-A5DD TCGA-PE-A5DE TCGA-PL-A8LX TCGA-PL-A8LY TCGA-PL-A8LZ TCGA-S3-A6ZF 
       64.21        86.96         0.16         0.26         9.93        16.50 
TCGA-S3-A6ZH TCGA-S3-AA0Z TCGA-S3-AA10 TCGA-S3-AA11 TCGA-S3-AA12 TCGA-S3-AA14 
       16.93        16.80        15.39        13.84        15.35        14.96 
TCGA-S3-AA15 TCGA-S3-AA17 TCGA-UL-AAZ6 TCGA-UU-A93S TCGA-W8-A86G TCGA-WT-AB41 
       13.84        13.94        17.03         3.81        11.41        52.96 
TCGA-WT-AB44 TCGA-XX-A899 TCGA-XX-A89A TCGA-Z7-A8R5 TCGA-Z7-A8R6 
       29.03        15.35        16.04       108.07       107.05 

  DEL PEAK 12(7P22.3) MUTATED DEL PEAK 12(7P22.3) WILD-TYPE 
                         0.33                          0.03 
  DEL PEAK 12(7P22.3) MUTATED DEL PEAK 12(7P22.3) WILD-TYPE 
                       186.48                        234.28 
  DEL PEAK 12(7P22.3) MUTATED DEL PEAK 12(7P22.3) WILD-TYPE 
                        27.42                         23.87 
[1] "0.3 - 186.5 (27.4)" "0.0 - 234.3 (23.9)"
[1] "hr=" "1"  
D41V2, continuous
                               vv
clus                            STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  DEL PEAK 12(7P22.3) MUTATED        10        8        2        0        54
  DEL PEAK 12(7P22.3) WILD-TYPE      79       73        6        3       299
                               vv
clus                            STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  DEL PEAK 12(7P22.3) MUTATED          29         1         17          5
  DEL PEAK 12(7P22.3) WILD-TYPE       216         1        133         24
                               vv
clus                            STAGE IIIC STAGE IV STAGE TIS STAGE X
  DEL PEAK 12(7P22.3) MUTATED            4        3         0       1
  DEL PEAK 12(7P22.3) WILD-TYPE         59       17         1      12
D41V3, multiclass
            clus
vv           DEL PEAK 12(7P22.3) MUTATED DEL PEAK 12(7P22.3) WILD-TYPE
  STAGE I                             10                            79
  STAGE IA                             8                            73
  STAGE IB                             2                             6
  STAGE II                             0                             3
  STAGE IIA                           54                           299
  STAGE IIB                           29                           216
  STAGE III                            1                             1
  STAGE IIIA                          17                           133
  STAGE IIIB                           5                            24
  STAGE IIIC                           4                            59
  STAGE IV                             3                            17
  STAGE TIS                            0                             1
  STAGE X                              1                            12
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                             T1  T2  T3  T4
  DEL PEAK 12(7P22.3) MUTATED    27  89  14   5
  DEL PEAK 12(7P22.3) WILD-TYPE 245 527 116  35
D41V4, multiclass
    clus
vv   DEL PEAK 12(7P22.3) MUTATED DEL PEAK 12(7P22.3) WILD-TYPE
  T1                          27                           245
  T2                          89                           527
  T3                          14                           116
  T4                           5                            35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                             N0  N1  N2  N3
  DEL PEAK 12(7P22.3) MUTATED    74  35  18   5
  DEL PEAK 12(7P22.3) WILD-TYPE 427 315  99  70
D41V5, multiclass
    clus
vv   DEL PEAK 12(7P22.3) MUTATED DEL PEAK 12(7P22.3) WILD-TYPE
  N0                          74                           427
  N1                          35                           315
  N2                          18                            99
  N3                           5                            70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D41V6, binary
                               cls
clus                              0   1
  DEL PEAK 12(7P22.3) MUTATED   121   3
  DEL PEAK 12(7P22.3) WILD-TYPE 758  18
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 12(7P22.3) MUTATED    121    3
  DEL PEAK 12(7P22.3) WILD-TYPE  758   18
   clus
vv  DEL PEAK 12(7P22.3) MUTATED DEL PEAK 12(7P22.3) WILD-TYPE
  0                         121                           758
  1                           3                            18
[1] 2 2
[1] FALSE
D41V7, binary
                               cls
clus                              0   1
  DEL PEAK 12(7P22.3) MUTATED   135   0
  DEL PEAK 12(7P22.3) WILD-TYPE 916  11
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 12(7P22.3) MUTATED    135    0
  DEL PEAK 12(7P22.3) WILD-TYPE  916   11
        clus
vv       DEL PEAK 12(7P22.3) MUTATED DEL PEAK 12(7P22.3) WILD-TYPE
  FEMALE                         135                           916
  MALE                             0                            11
[1] 2 2
[1] FALSE
                               vv
clus                            INFILTRATING CARCINOMA NOS
  DEL PEAK 12(7P22.3) MUTATED                            0
  DEL PEAK 12(7P22.3) WILD-TYPE                          1
                               vv
clus                            INFILTRATING DUCTAL CARCINOMA
  DEL PEAK 12(7P22.3) MUTATED                             119
  DEL PEAK 12(7P22.3) WILD-TYPE                           644
                               vv
clus                            INFILTRATING LOBULAR CARCINOMA
  DEL PEAK 12(7P22.3) MUTATED                                4
  DEL PEAK 12(7P22.3) WILD-TYPE                            188
                               vv
clus                            MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  DEL PEAK 12(7P22.3) MUTATED                     1                     1
  DEL PEAK 12(7P22.3) WILD-TYPE                   5                     3
                               vv
clus                            MIXED HISTOLOGY (PLEASE SPECIFY)
  DEL PEAK 12(7P22.3) MUTATED                                  4
  DEL PEAK 12(7P22.3) WILD-TYPE                               26
                               vv
clus                            MUCINOUS CARCINOMA OTHER  SPECIFY
  DEL PEAK 12(7P22.3) MUTATED                    0              6
  DEL PEAK 12(7P22.3) WILD-TYPE                 17             42
D41V8, multiclass
                                  clus
vv                                 DEL PEAK 12(7P22.3) MUTATED
  INFILTRATING CARCINOMA NOS                                 0
  INFILTRATING DUCTAL CARCINOMA                            119
  INFILTRATING LOBULAR CARCINOMA                             4
  MEDULLARY CARCINOMA                                        1
  METAPLASTIC CARCINOMA                                      1
  MIXED HISTOLOGY (PLEASE SPECIFY)                           4
  MUCINOUS CARCINOMA                                         0
  OTHER  SPECIFY                                             6
                                  clus
vv                                 DEL PEAK 12(7P22.3) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                   1
  INFILTRATING DUCTAL CARCINOMA                              644
  INFILTRATING LOBULAR CARCINOMA                             188
  MEDULLARY CARCINOMA                                          5
  METAPLASTIC CARCINOMA                                        3
  MIXED HISTOLOGY (PLEASE SPECIFY)                            26
  MUCINOUS CARCINOMA                                          17
  OTHER  SPECIFY                                              42
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D41V9, binary
                               cls
clus                              0   1
  DEL PEAK 12(7P22.3) MUTATED    40  95
  DEL PEAK 12(7P22.3) WILD-TYPE 248 679
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 12(7P22.3) MUTATED     40   95
  DEL PEAK 12(7P22.3) WILD-TYPE  248  679
     clus
vv    DEL PEAK 12(7P22.3) MUTATED DEL PEAK 12(7P22.3) WILD-TYPE
  NO                           40                           248
  YES                          95                           679
[1] 2 2
[1] FALSE
D41V10, continuous
                               vv
clus                            AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 12(7P22.3) MUTATED                                  0     8
  DEL PEAK 12(7P22.3) WILD-TYPE                                1    52
                               vv
clus                            BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 12(7P22.3) MUTATED                          23    86
  DEL PEAK 12(7P22.3) WILD-TYPE                       147   650
D41V11, multiclass
                                  clus
vv                                 DEL PEAK 12(7P22.3) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                           0
  ASIAN                                                      8
  BLACK OR AFRICAN AMERICAN                                 23
  WHITE                                                     86
                                  clus
vv                                 DEL PEAK 12(7P22.3) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                             1
  ASIAN                                                       52
  BLACK OR AFRICAN AMERICAN                                  147
  WHITE                                                      650
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D41V12, binary
                               cls
clus                              0   1
  DEL PEAK 12(7P22.3) MUTATED     4 107
  DEL PEAK 12(7P22.3) WILD-TYPE  34 751
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 12(7P22.3) MUTATED      4  107
  DEL PEAK 12(7P22.3) WILD-TYPE   34  751
                        clus
vv                       DEL PEAK 12(7P22.3) MUTATED
  HISPANIC OR LATINO                               4
  NOT HISPANIC OR LATINO                         107
                        clus
vv                       DEL PEAK 12(7P22.3) WILD-TYPE
  HISPANIC OR LATINO                                34
  NOT HISPANIC OR LATINO                           751
[1] 2 2
[1] FALSE

Clustering(42) Variable = DEL PEAK 13(7Q36.1) MUTATION ANALYSIS
D42V1, survival
                               sevent
clus2                             0   1
  DEL PEAK 13(7Q36.1) MUTATED   169  24
  DEL PEAK 13(7Q36.1) WILD-TYPE 747 104
  DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE 
                          193                           851 
  DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE 
                           24                           104 
$`DEL PEAK 13(7Q36.1) MUTATED`
TCGA-5T-A9QA TCGA-A1-A0SN TCGA-A1-A0SO TCGA-A2-A04U TCGA-A2-A04X TCGA-A2-A0CM 
        9.96        39.32        28.01        87.25        55.43        24.79 
TCGA-A2-A0CT TCGA-A2-A0D4 TCGA-A2-A0ET TCGA-A2-A0T7 TCGA-A2-A0YM TCGA-A2-A0YT 
       75.25        25.22        35.05        20.75        31.73        23.77 
TCGA-A2-A1FW TCGA-A2-A1G0 TCGA-A2-A1G1 TCGA-A2-A25C TCGA-A2-A4RW TCGA-A2-A4RX 
       17.36        20.25        19.20        17.19         7.30        24.39 
TCGA-A7-A0CD TCGA-A7-A0DC TCGA-A7-A13G TCGA-A7-A26G TCGA-A7-A3IZ TCGA-A7-A4SD 
       38.30        29.79        23.61        23.74        10.59        14.50 
TCGA-A7-A6VV TCGA-A7-A6VX TCGA-A8-A06O TCGA-A8-A06U TCGA-A8-A075 TCGA-A8-A076 
       10.29        10.42        13.02        29.03        17.03        53.98 
TCGA-A8-A079 TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A08B TCGA-A8-A08P TCGA-A8-A08S 
        9.01        18.97        14.01        38.01        31.00        33.01 
TCGA-A8-A08X TCGA-A8-A092 TCGA-A8-A099 TCGA-A8-A09I TCGA-A8-A09Q TCGA-A8-A09W 
       43.00        30.97         9.99        45.07        25.02         0.99 
TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A9 TCGA-AC-A23E TCGA-AC-A2BK 
       12.00        19.04        13.02        27.02         2.37        38.53 
TCGA-AC-A2FM TCGA-AC-A2QH TCGA-AN-A049 TCGA-AN-A04C TCGA-AN-A0AJ TCGA-AN-A0AM 
       26.04        33.04         0.62         1.78         9.96         0.16 
TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FY 
        0.33         0.33         7.04         0.33         0.36         0.33 
TCGA-AN-A0FZ TCGA-AN-A0XN TCGA-AN-A0XS TCGA-AO-A03L TCGA-AO-A0J2 TCGA-AO-A0J7 
        0.33         0.33         0.33        80.28        32.78        20.32 
TCGA-AO-A0JD TCGA-AO-A0JE TCGA-AO-A0JM TCGA-AO-A12D TCGA-AO-A1KS TCGA-AQ-A04J 
       72.00        76.77        71.80        64.04         0.53        26.93 
TCGA-AQ-A04L TCGA-AQ-A1H2 TCGA-AR-A0U2 TCGA-AR-A0U4 TCGA-AR-A1AH TCGA-AR-A1AR 
      130.09        15.62        83.87        85.97        75.55        17.23 
TCGA-AR-A24H TCGA-AR-A24W TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LK TCGA-B6-A0I9 
      160.90        50.96        58.92        93.83        54.21        12.13 
TCGA-B6-A0IC TCGA-B6-A0IJ TCGA-B6-A0IO TCGA-B6-A0RS TCGA-B6-A0WY TCGA-B6-A408 
       50.70       176.98       110.14       100.70       113.79        68.12 
TCGA-BH-A0AV TCGA-BH-A0AZ TCGA-BH-A0B2 TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BW 
       59.84        28.50        40.83        24.85        21.70        11.67 
TCGA-BH-A0DI TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E2 TCGA-BH-A0EB TCGA-BH-A0W7 
       22.13        47.41        16.27        14.30        24.49        44.81 
TCGA-BH-A18F TCGA-BH-A18L TCGA-BH-A18Q TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A18V 
        8.81        26.66        55.63         7.36        51.39        51.16 
TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1FN TCGA-BH-A203 TCGA-BH-A42T TCGA-BH-A5J0 
       42.28        12.00        72.07        38.60        10.52        23.51 
TCGA-C8-A12L TCGA-C8-A12W TCGA-C8-A12Z TCGA-C8-A135 TCGA-C8-A138 TCGA-C8-A1HF 
       11.93        12.66         0.39         1.05         4.08        10.92 
TCGA-C8-A1HJ TCGA-C8-A1HM TCGA-C8-A26X TCGA-C8-A27B TCGA-D8-A143 TCGA-D8-A1JA 
        0.16         2.30         0.36         0.99        14.17        16.50 
TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JG TCGA-D8-A1JJ TCGA-D8-A1JU TCGA-D8-A1X5 
       18.15        18.90        12.03        20.09        14.70        18.58 
TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XM TCGA-D8-A1XQ 
       27.58        18.15        21.83        14.50        17.69        16.41 
TCGA-D8-A1XU TCGA-E2-A109 TCGA-E2-A14N TCGA-E2-A14R TCGA-E2-A14W TCGA-E2-A15A 
       12.99        46.59        47.15        38.60        32.02        23.34 
TCGA-E2-A15H TCGA-E2-A15M TCGA-E2-A1B0 TCGA-E2-A1BC TCGA-E2-A1IE TCGA-E2-A1II 
       12.92        11.05        53.62        16.47        38.30        33.70 
TCGA-E2-A1L7 TCGA-E2-A1L8 TCGA-E2-A1LB TCGA-E9-A1N6 TCGA-E9-A1NA TCGA-E9-A1NC 
       27.42        39.62        40.47        13.48        36.56        39.55 
TCGA-E9-A1NE TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RC 
       35.77         2.56         6.12         2.76        21.21        40.24 
TCGA-E9-A1RF TCGA-E9-A1RG TCGA-E9-A22B TCGA-E9-A22E TCGA-E9-A244 TCGA-E9-A24A 
        6.58        21.27        22.75        12.89         0.69        24.56 
TCGA-E9-A3HO TCGA-E9-A54Y TCGA-E9-A5UP TCGA-EW-A1IY TCGA-EW-A1P0 TCGA-EW-A1PC 
       26.07        23.84        14.40         8.48        41.13         6.15 
TCGA-EW-A1PD TCGA-EW-A2FV TCGA-EW-A2FW TCGA-EW-A3U0 TCGA-GI-A2C9 TCGA-GM-A2D9 
       13.94        25.91        22.09        17.49       109.87        59.57 
TCGA-GM-A2DD TCGA-GM-A2DH TCGA-GM-A2DI TCGA-LL-A5YP TCGA-LL-A7SZ TCGA-OL-A5RW 
       75.02        72.10        85.15        14.79        14.70        36.36 
TCGA-OL-A5RY TCGA-OL-A66I TCGA-OL-A66P TCGA-S3-A6ZG TCGA-S3-AA0Z TCGA-S3-AA10 
       24.72        23.47        14.07        13.12        16.80        15.39 
TCGA-S3-AA14 
       14.96 

$`DEL PEAK 13(7Q36.1) WILD-TYPE`
TCGA-3C-AAAU TCGA-3C-AALI TCGA-3C-AALJ TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT0 
      129.14       131.67        42.81        40.14        11.44        48.56 
TCGA-5L-AAT1 TCGA-A1-A0SB TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG 
       48.36         8.52        14.37        43.43        48.10        14.27 
TCGA-A1-A0SH TCGA-A1-A0SI TCGA-A1-A0SJ TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SP 
       47.24        20.88        13.68        31.79         7.96        19.20 
TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04P TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04T 
       18.21       104.81        18.02        78.41       121.94        73.84 
TCGA-A2-A04V TCGA-A2-A04W TCGA-A2-A04Y TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CO 
       63.12       101.98        36.13       136.73        99.12       114.81 
TCGA-A2-A0CP TCGA-A2-A0CQ TCGA-A2-A0CR TCGA-A2-A0CS TCGA-A2-A0CU TCGA-A2-A0CV 
       92.48        88.60       107.93        75.55         5.19        98.99 
TCGA-A2-A0CW TCGA-A2-A0CX TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 
      107.93        56.81        67.33        34.55        33.76        61.58 
TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0EQ TCGA-A2-A0ER 
      101.72       134.40        80.28       107.61        79.76        74.40 
TCGA-A2-A0ES TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0EY 
       72.00        34.29        31.82        61.94        24.72        63.29 
TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0SX TCGA-A2-A0SY 
       99.19        54.64        27.12        44.88        50.43        44.28 
TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T4 TCGA-A2-A0T5 
       17.52        17.13         8.38        49.84        20.52        17.46 
TCGA-A2-A0T6 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YE TCGA-A2-A0YF TCGA-A2-A0YG 
       18.90        32.55        25.28        18.21        50.47        21.90 
TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A1FV 
       21.67        49.48        18.61        19.33        48.46        23.47 
TCGA-A2-A1FX TCGA-A2-A1FZ TCGA-A2-A1G4 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25A 
       60.72        22.45        19.56        16.47        52.47       107.70 
TCGA-A2-A25B TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD 
       42.44        18.15       105.34        10.59        20.88        39.65 
TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX 
       33.93        83.01        29.98        32.75        49.48        47.31 
TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A3Y0 TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S1 
       34.98        50.37        38.37        21.30        23.21        26.96 
TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CE TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0CJ 
       21.14        21.90        35.31        34.29        35.47        30.61 
TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A13D TCGA-A7-A13E TCGA-A7-A13F 
       37.45        35.67        33.11        31.73        20.19        25.15 
TCGA-A7-A13H TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26H TCGA-A7-A26I TCGA-A7-A26J 
       29.56        31.36        24.26        23.80        21.73        20.61 
TCGA-A7-A2KD TCGA-A7-A3IY TCGA-A7-A3J0 TCGA-A7-A3J1 TCGA-A7-A3RF TCGA-A7-A425 
       22.32        11.34        10.29        11.28        13.41        14.70 
TCGA-A7-A426 TCGA-A7-A4SA TCGA-A7-A4SB TCGA-A7-A4SE TCGA-A7-A4SF TCGA-A7-A56D 
       11.97        14.93        13.74        21.17        17.92        14.73 
TCGA-A7-A5ZV TCGA-A7-A5ZW TCGA-A7-A5ZX TCGA-A7-A6VW TCGA-A7-A6VY TCGA-A8-A06P 
       12.10        10.72        11.05         9.37         8.75        13.02 
TCGA-A8-A06Q TCGA-A8-A06R TCGA-A8-A06T TCGA-A8-A06X TCGA-A8-A06Y TCGA-A8-A06Z 
        1.02        17.98        53.06        31.00        26.01         1.02 
TCGA-A8-A07B TCGA-A8-A07E TCGA-A8-A07F TCGA-A8-A07J TCGA-A8-A07L TCGA-A8-A07O 
       43.00        19.99        18.97        12.00        32.05         9.99 
TCGA-A8-A07P TCGA-A8-A07R TCGA-A8-A07S TCGA-A8-A07U TCGA-A8-A07W TCGA-A8-A07Z 
       10.98         8.98         7.99        24.99         9.99        45.07 
TCGA-A8-A082 TCGA-A8-A084 TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08C 
       18.05        15.06        36.95        13.02         0.99        28.96 
TCGA-A8-A08F TCGA-A8-A08G TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08O 
       33.01        19.96        12.00        37.05         9.99        31.00 
TCGA-A8-A08R TCGA-A8-A08T TCGA-A8-A08Z TCGA-A8-A091 TCGA-A8-A093 TCGA-A8-A095 
        0.99       112.08        40.01        33.01        17.95        41.98 
TCGA-A8-A097 TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09C TCGA-A8-A09D TCGA-A8-A09E 
       12.00         9.99        12.00         1.02        50.04        49.05 
TCGA-A8-A09K TCGA-A8-A09M TCGA-A8-A09N TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09V 
       29.98        33.07         1.02         8.98        19.04        15.02 
TCGA-A8-A09X TCGA-A8-A0A6 TCGA-A8-A0A7 TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C 
       14.01        21.04         0.99        17.03        38.04         0.95 
TCGA-AC-A23G TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FF 
       10.85         5.72         1.48        99.35        40.57        55.43 
TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FO TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3BB 
       36.99        38.79        50.70         0.92         2.27        32.45 
TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3TN TCGA-AC-A3W5 TCGA-AC-A3W6 
       16.31        14.83        22.19        14.99        16.57        19.79 
TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A5XS TCGA-AC-A62V TCGA-AC-A62X TCGA-AC-A62Y 
       23.24        24.79         1.55        11.44        13.71        17.42 
TCGA-AC-A6IV TCGA-AC-A6IW TCGA-AC-A6IX TCGA-AC-A6NO TCGA-AC-A7VB TCGA-AC-A7VC 
       18.67        13.58        12.26         1.68         8.22         0.03 
TCGA-AC-A8OP TCGA-AC-A8OQ TCGA-AC-A8OR TCGA-AC-A8OS TCGA-AN-A03X TCGA-AN-A03Y 
       20.19         1.12         1.32         2.30         0.33         0.33 
TCGA-AN-A041 TCGA-AN-A046 TCGA-AN-A04A TCGA-AN-A04D TCGA-AN-A0AK TCGA-AN-A0AL 
        0.23         0.33         2.96         1.71         7.36         6.51 
TCGA-AN-A0AR TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FL 
        0.33         6.44         5.65         7.96         7.00         7.59 
TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FX TCGA-AN-A0XL TCGA-AN-A0XO TCGA-AN-A0XP 
        7.17         6.28         0.33         0.33        12.33         0.30 
TCGA-AN-A0XR TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03M 
        0.33         0.33         0.33         5.33         5.59        61.35 
TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03U 
       66.77        81.63        95.70        68.75        47.87        58.95 
TCGA-AO-A03V TCGA-AO-A0J3 TCGA-AO-A0J4 TCGA-AO-A0J5 TCGA-AO-A0J6 TCGA-AO-A0J8 
       29.13        21.40        52.18        26.04        37.48        22.36 
TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JC TCGA-AO-A0JF TCGA-AO-A0JG 
       53.03        21.53        50.70        50.86        21.37        26.24 
TCGA-AO-A0JI TCGA-AO-A0JJ TCGA-AO-A0JL TCGA-AO-A124 TCGA-AO-A125 TCGA-AO-A126 
       50.24        62.04        55.33       102.58        99.25       108.72 
TCGA-AO-A128 TCGA-AO-A129 TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12E TCGA-AO-A12F 
      106.78       108.03        90.58        98.27        57.30        48.36 
TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KQ TCGA-AO-A1KR 
       41.62        28.37        14.73        82.62        61.87        70.39 
TCGA-AO-A1KT TCGA-AQ-A04H TCGA-AQ-A0Y5 TCGA-AQ-A1H3 TCGA-AQ-A54N TCGA-AQ-A54O 
       17.79        24.79         5.65        32.52         2.56        32.91 
TCGA-AQ-A7U7 TCGA-AR-A0TP TCGA-AR-A0TQ TCGA-AR-A0TR TCGA-AR-A0TS TCGA-AR-A0TT 
       19.20       111.32        73.64         5.26        74.79        86.66 
TCGA-AR-A0TV TCGA-AR-A0TW TCGA-AR-A0TX TCGA-AR-A0TY TCGA-AR-A0TZ TCGA-AR-A0U0 
       42.35        98.93        64.83        55.86       107.24        65.36 
TCGA-AR-A0U1 TCGA-AR-A0U3 TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AL 
      101.95       114.02        61.84        52.77        51.25        48.82 
TCGA-AR-A1AM TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AQ TCGA-AR-A1AS 
       76.11        43.73        43.56        39.98        43.07        37.81 
TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24K 
       76.21        61.28        63.62        62.14        33.73        50.89 
TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24Q 
       94.22        96.89        78.51        84.20         2.76       104.28 
TCGA-AR-A24R TCGA-AR-A24S TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24V TCGA-AR-A24X 
       87.22        97.84        76.01        53.36        85.35        83.77 
TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A251 TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A2LE 
       79.00        89.00        78.48        73.18        72.76       143.21 
TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LL TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO 
       20.25        62.86        66.15        52.11        38.17        39.39 
TCGA-AR-A2LQ TCGA-AR-A2LR TCGA-AR-A5QM TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ 
       40.54        20.38        54.74        16.04        20.45        10.59 
TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0IA TCGA-B6-A0IB TCGA-B6-A0IE 
       77.62       143.38       149.59       220.90       129.57        65.72 
TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IP 
      146.50       112.37        18.77       126.12        84.59       110.93 
TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RL 
      140.88       211.56        68.45       189.01       234.28        81.17 
TCGA-B6-A0RM TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RT 
       78.02       172.96       162.05       102.77       140.48        89.46 
TCGA-B6-A0RU TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0WW 
      131.21       157.41        97.48       188.68        79.63        18.35 
TCGA-B6-A0WX TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 
       21.47       129.57       129.70       186.48        28.27        68.94 
TCGA-B6-A0X7 TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A1KN TCGA-B6-A2IU 
       58.88        43.59       101.52        73.51       139.17       170.17 
TCGA-B6-A401 TCGA-B6-A402 TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AU TCGA-BH-A0AW 
       85.35        74.99       103.63        71.15        24.53        20.45 
TCGA-BH-A0AY TCGA-BH-A0B0 TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0B6 
       25.55        46.95        39.55        39.16        48.36        56.94 
TCGA-BH-A0B7 TCGA-BH-A0B9 TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BF 
       56.98        51.68        37.22        32.02        18.21        25.71 
TCGA-BH-A0BL TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BP TCGA-BH-A0BQ TCGA-BH-A0BR 
       44.05        61.68        35.67        48.69        27.19        53.69 
TCGA-BH-A0BS TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C1 
       53.95        45.57        49.94        49.05        41.75        44.02 
TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH 
       48.13        42.90        45.83        31.17        23.44        38.01 
TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DO TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0DS 
       13.91        48.23        17.26        15.65         3.22         2.56 
TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E6 TCGA-BH-A0E7 
       38.47        67.86         4.41        15.68         9.63        44.81 
TCGA-BH-A0E9 TCGA-BH-A0EA TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ 
       46.19        32.58        31.00        24.43        30.35        10.78 
TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H7 TCGA-BH-A0H9 
       15.16        37.78        35.51        24.56        23.08        41.00 
TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HO TCGA-BH-A0HP 
       52.96        26.50        20.38         5.85         2.50        13.61 
TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0RX 
       36.85        12.89        51.32        27.25        50.79         5.59 
TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0WA TCGA-BH-A18G TCGA-BH-A18I 
       23.93        24.95        42.35        23.05         2.01         7.23 
TCGA-BH-A18J TCGA-BH-A18K TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18R 
       20.12        90.84        72.56        37.74        30.28        37.55 
TCGA-BH-A18S TCGA-BH-A1EN TCGA-BH-A1EO TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EW 
       66.05        69.93        91.99       113.82        82.85        55.69 
TCGA-BH-A1EX TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F2 TCGA-BH-A1F5 TCGA-BH-A1F6 
       49.58        17.69        25.81        31.53        89.16        97.48 
TCGA-BH-A1F8 TCGA-BH-A1FB TCGA-BH-A1FC TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FG 
       24.66       120.62       114.15        33.17        74.73       122.89 
TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FM TCGA-BH-A1FR TCGA-BH-A1FU 
       36.92        63.35        55.00        45.63       144.59        72.07 
TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A204 TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A28O 
       28.14        26.14        83.31        57.83       130.16        10.65 
TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5IZ TCGA-BH-A6R8 
        6.44        20.12       109.28         8.94        18.64         9.63 
TCGA-BH-A6R9 TCGA-BH-A8FY TCGA-BH-A8FZ TCGA-BH-A8G0 TCGA-BH-AB28 TCGA-C8-A12M 
        5.26         9.70        18.87        21.76         9.44        11.77 
TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12U TCGA-C8-A12V 
       11.77        12.66        11.77        12.66        12.66        12.66 
TCGA-C8-A12X TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A137 
       12.66         3.16         2.24         1.87         1.12         4.11 
TCGA-C8-A1HE TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HK TCGA-C8-A1HL TCGA-C8-A1HN 
       12.33        11.34        11.28        12.03        10.42         3.25 
TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A274 
        0.30         0.23         0.43         8.28         9.67         9.53 
TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-C8-A8HP 
        0.03         9.50        12.20         0.03         0.23        13.02 
TCGA-C8-A8HQ TCGA-C8-A8HR TCGA-C8-A9FZ TCGA-D8-A13Y TCGA-D8-A13Z TCGA-D8-A140 
       12.49        13.41        19.46        11.90        20.88        13.25 
TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A145 TCGA-D8-A146 TCGA-D8-A147 TCGA-D8-A1J8 
       20.58        13.97        13.48        21.14        19.20        14.17 
TCGA-D8-A1J9 TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JF TCGA-D8-A1JH TCGA-D8-A1JI 
       17.49        18.71        15.78        12.03        14.01        18.97 
TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1JP TCGA-D8-A1JS 
       20.12        20.09        19.40        20.38        21.01        12.20 
TCGA-D8-A1JT TCGA-D8-A1X6 TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XC 
       13.32        17.79        16.73        25.74        23.90        12.39 
TCGA-D8-A1XD TCGA-D8-A1XF TCGA-D8-A1XG TCGA-D8-A1XL TCGA-D8-A1XO TCGA-D8-A1XR 
       17.16        15.22        14.73        19.92        15.55        15.85 
TCGA-D8-A1XS TCGA-D8-A1XT TCGA-D8-A1XV TCGA-D8-A1XW TCGA-D8-A1XY TCGA-D8-A1XZ 
       16.31         6.35        15.16        12.66        16.54        15.32 
TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 TCGA-D8-A1Y3 TCGA-D8-A27E TCGA-D8-A27F 
       15.52         9.93        14.24        14.14        17.42        16.04 
TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27M 
       13.45        13.05        14.43         9.44        16.41        13.48 
TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27R TCGA-D8-A27T TCGA-D8-A27V TCGA-D8-A27W 
        4.80         0.76        10.09        13.08        12.53        12.26 
TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-D8-A73U TCGA-D8-A73W TCGA-D8-A73X 
       33.37        18.51        21.67        16.18         8.02        12.10 
TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10C 
       43.00        34.42        27.52        40.41        37.51        40.11 
TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14Q TCGA-E2-A14S 
       28.44        28.87        44.68        40.96        38.24        33.17 
TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A14Z 
       33.30        43.33        34.26        31.96        28.60        18.51 
TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A153 TCGA-E2-A154 TCGA-E2-A155 TCGA-E2-A156 
       25.41        27.12        23.24        19.43        21.04        23.87 
TCGA-E2-A158 TCGA-E2-A159 TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15E TCGA-E2-A15F 
       14.79        25.05        22.82        17.29        20.71        21.63 
TCGA-E2-A15G TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15O 
       18.21        17.42        19.40         9.04        20.58        13.02 
TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B1 
       19.56        17.06        14.07        14.99        60.53        53.03 
TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BD TCGA-E2-A1IF TCGA-E2-A1IG 
       33.01        32.35        28.50        17.10        37.41        32.78 
TCGA-E2-A1IH TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IO 
       33.73        28.44        22.65         3.88        22.19        20.98 
TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L9 TCGA-E2-A1LA TCGA-E2-A1LE TCGA-E2-A1LG 
       11.08        54.18        19.66        24.59        28.90        18.87 
TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A1LL TCGA-E2-A2P5 TCGA-E2-A2P6 
      106.75       102.61         8.75        43.04        16.93         5.52 
TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A573 TCGA-E2-A574 TCGA-E2-A576 
       15.72         8.28        30.61        34.92        26.56        34.29 
TCGA-E2-A9RU TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N8 TCGA-E9-A1N9 
       12.85        34.82        32.88        36.82        12.00        13.12 
TCGA-E9-A1ND TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R0 
       12.59        35.24        25.84         9.86        11.90        28.27 
TCGA-E9-A1R2 TCGA-E9-A1R5 TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RD TCGA-E9-A1RE 
       34.95         3.02        32.09        32.09         1.12        34.65 
TCGA-E9-A1RH TCGA-E9-A1RI TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 
       34.59        35.64        34.13        32.05        12.53        13.32 
TCGA-E9-A22A TCGA-E9-A22D TCGA-E9-A22G TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A247 
       39.09        41.03        23.51        20.71        17.06        27.22 
TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A2JT TCGA-E9-A3Q9 
        1.94         7.13         0.72        29.72         0.76        18.41 
TCGA-E9-A3QA TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UO 
       30.18        15.72        12.33        14.70         0.79        13.81 
TCGA-E9-A6HE TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 
       15.39        12.20        39.72        18.21        18.90        13.25 
TCGA-EW-A1J3 TCGA-EW-A1J5 TCGA-EW-A1J6 TCGA-EW-A1OV TCGA-EW-A1OW TCGA-EW-A1OX 
       16.57        15.68        28.77        25.94        22.82        29.95 
TCGA-EW-A1OY TCGA-EW-A1OZ TCGA-EW-A1P1 TCGA-EW-A1P3 TCGA-EW-A1P4 TCGA-EW-A1P5 
       29.85        40.41        39.78        52.96        29.82        23.11 
TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1P8 TCGA-EW-A1PA TCGA-EW-A1PB TCGA-EW-A1PE 
       18.48        30.08         7.86        18.90        19.99        10.52 
TCGA-EW-A1PF TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A3E8 
       14.43        34.55        19.96        55.00        52.73        34.03 
TCGA-EW-A423 TCGA-EW-A424 TCGA-GI-A2C8 TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DC 
       10.16        23.51         7.40       216.76        79.10        83.34 
TCGA-GM-A2DF TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A2DO 
       70.85        86.96       115.69       106.06       101.62        85.35 
TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XL TCGA-GM-A3XN TCGA-GM-A4E0 
      110.50        38.20        43.73        69.30        66.38        72.03 
TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2NL TCGA-HN-A2OB TCGA-JL-A3YW TCGA-JL-A3YX 
       13.55        18.12         2.60        62.43        11.84        11.57 
TCGA-LD-A66U TCGA-LD-A74U TCGA-LD-A7W5 TCGA-LD-A7W6 TCGA-LD-A9QF TCGA-LL-A440 
       21.24        13.22         7.10        13.28        10.62        24.95 
TCGA-LL-A441 TCGA-LL-A442 TCGA-LL-A50Y TCGA-LL-A5YL TCGA-LL-A5YM TCGA-LL-A5YN 
       11.44        10.95        25.05        17.06        15.32        14.70 
TCGA-LL-A5YO TCGA-LL-A6FP TCGA-LL-A6FQ TCGA-LL-A6FR TCGA-LL-A73Y TCGA-LL-A73Z 
       14.47        22.26         2.63        16.08        15.68         7.46 
TCGA-LL-A740 TCGA-LL-A7T0 TCGA-LL-A8F5 TCGA-LL-A9Q3 TCGA-LQ-A4E4 TCGA-MS-A51U 
       14.50        12.36        14.73        14.07        27.91        22.39 
TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RU 
        2.10        36.30        58.52        31.99        58.62        40.08 
TCGA-OL-A5RV TCGA-OL-A5RX TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66H TCGA-OL-A66J 
       34.92        28.87        22.32        20.38        26.70        65.62 
TCGA-OL-A66K TCGA-OL-A66L TCGA-OL-A66N TCGA-OL-A66O TCGA-OL-A6VO TCGA-OL-A6VQ 
       41.92        42.77        26.04        17.36        28.21        19.73 
TCGA-OL-A6VR TCGA-OL-A97C TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE TCGA-PL-A8LX 
       40.11         8.91        47.01        64.21        86.96         0.16 
TCGA-PL-A8LY TCGA-PL-A8LZ TCGA-S3-A6ZF TCGA-S3-A6ZH TCGA-S3-AA11 TCGA-S3-AA12 
        0.26         9.93        16.50        16.93        13.84        15.35 
TCGA-S3-AA15 TCGA-S3-AA17 TCGA-UL-AAZ6 TCGA-UU-A93S TCGA-W8-A86G TCGA-WT-AB41 
       13.84        13.94        17.03         3.81        11.41        52.96 
TCGA-WT-AB44 TCGA-XX-A899 TCGA-XX-A89A TCGA-Z7-A8R5 TCGA-Z7-A8R6 
       29.03        15.35        16.04       108.07       107.05 

  DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE 
                         0.16                          0.03 
  DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE 
                       176.98                        234.28 
  DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE 
                        22.09                         25.15 
[1] "0.2 - 177.0 (22.1)" "0.0 - 234.3 (25.1)"
[1] "hr=" "1.5"
D42V2, continuous
                               vv
clus                            STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  DEL PEAK 13(7Q36.1) MUTATED        17       11        1        0        73
  DEL PEAK 13(7Q36.1) WILD-TYPE      72       70        7        3       280
                               vv
clus                            STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  DEL PEAK 13(7Q36.1) MUTATED          45         1         32          5
  DEL PEAK 13(7Q36.1) WILD-TYPE       200         1        118         24
                               vv
clus                            STAGE IIIC STAGE IV STAGE TIS STAGE X
  DEL PEAK 13(7Q36.1) MUTATED            8        1         0       2
  DEL PEAK 13(7Q36.1) WILD-TYPE         55       19         1      11
D42V3, multiclass
            clus
vv           DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE
  STAGE I                             17                            72
  STAGE IA                            11                            70
  STAGE IB                             1                             7
  STAGE II                             0                             3
  STAGE IIA                           73                           280
  STAGE IIB                           45                           200
  STAGE III                            1                             1
  STAGE IIIA                          32                           118
  STAGE IIIB                           5                            24
  STAGE IIIC                           8                            55
  STAGE IV                             1                            19
  STAGE TIS                            0                             1
  STAGE X                              2                            11
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                             T1  T2  T3  T4
  DEL PEAK 13(7Q36.1) MUTATED    43 127  19   8
  DEL PEAK 13(7Q36.1) WILD-TYPE 229 489 111  32
D42V4, multiclass
    clus
vv   DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE
  T1                          43                           229
  T2                         127                           489
  T3                          19                           111
  T4                           8                            32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                             N0  N1  N2  N3
  DEL PEAK 13(7Q36.1) MUTATED    95  59  28  11
  DEL PEAK 13(7Q36.1) WILD-TYPE 406 291  89  64
D42V5, multiclass
    clus
vv   DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE
  N0                          95                           406
  N1                          59                           291
  N2                          28                            89
  N3                          11                            64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D42V6, binary
                               cls
clus                              0   1
  DEL PEAK 13(7Q36.1) MUTATED   170   1
  DEL PEAK 13(7Q36.1) WILD-TYPE 709  20
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 13(7Q36.1) MUTATED    170    1
  DEL PEAK 13(7Q36.1) WILD-TYPE  709   20
   clus
vv  DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE
  0                         170                           709
  1                           1                            20
[1] 2 2
[1] FALSE
D42V7, binary
                               cls
clus                              0   1
  DEL PEAK 13(7Q36.1) MUTATED   195   2
  DEL PEAK 13(7Q36.1) WILD-TYPE 856   9
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 13(7Q36.1) MUTATED    195    2
  DEL PEAK 13(7Q36.1) WILD-TYPE  856    9
        clus
vv       DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE
  FEMALE                         195                           856
  MALE                             2                             9
[1] 2 2
[1] FALSE
                               vv
clus                            INFILTRATING CARCINOMA NOS
  DEL PEAK 13(7Q36.1) MUTATED                            0
  DEL PEAK 13(7Q36.1) WILD-TYPE                          1
                               vv
clus                            INFILTRATING DUCTAL CARCINOMA
  DEL PEAK 13(7Q36.1) MUTATED                             164
  DEL PEAK 13(7Q36.1) WILD-TYPE                           599
                               vv
clus                            INFILTRATING LOBULAR CARCINOMA
  DEL PEAK 13(7Q36.1) MUTATED                               15
  DEL PEAK 13(7Q36.1) WILD-TYPE                            177
                               vv
clus                            MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  DEL PEAK 13(7Q36.1) MUTATED                     0                     0
  DEL PEAK 13(7Q36.1) WILD-TYPE                   6                     4
                               vv
clus                            MIXED HISTOLOGY (PLEASE SPECIFY)
  DEL PEAK 13(7Q36.1) MUTATED                                  7
  DEL PEAK 13(7Q36.1) WILD-TYPE                               23
                               vv
clus                            MUCINOUS CARCINOMA OTHER  SPECIFY
  DEL PEAK 13(7Q36.1) MUTATED                    0             11
  DEL PEAK 13(7Q36.1) WILD-TYPE                 17             37
D42V8, multiclass
                                  clus
vv                                 DEL PEAK 13(7Q36.1) MUTATED
  INFILTRATING CARCINOMA NOS                                 0
  INFILTRATING DUCTAL CARCINOMA                            164
  INFILTRATING LOBULAR CARCINOMA                            15
  MEDULLARY CARCINOMA                                        0
  METAPLASTIC CARCINOMA                                      0
  MIXED HISTOLOGY (PLEASE SPECIFY)                           7
  MUCINOUS CARCINOMA                                         0
  OTHER  SPECIFY                                            11
                                  clus
vv                                 DEL PEAK 13(7Q36.1) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                   1
  INFILTRATING DUCTAL CARCINOMA                              599
  INFILTRATING LOBULAR CARCINOMA                             177
  MEDULLARY CARCINOMA                                          6
  METAPLASTIC CARCINOMA                                        4
  MIXED HISTOLOGY (PLEASE SPECIFY)                            23
  MUCINOUS CARCINOMA                                          17
  OTHER  SPECIFY                                              37
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D42V9, binary
                               cls
clus                              0   1
  DEL PEAK 13(7Q36.1) MUTATED    56 141
  DEL PEAK 13(7Q36.1) WILD-TYPE 232 633
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 13(7Q36.1) MUTATED     56  141
  DEL PEAK 13(7Q36.1) WILD-TYPE  232  633
     clus
vv    DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE
  NO                           56                           232
  YES                         141                           633
[1] 2 2
[1] FALSE
D42V10, continuous
                               vv
clus                            AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 13(7Q36.1) MUTATED                                  0    13
  DEL PEAK 13(7Q36.1) WILD-TYPE                                1    47
                               vv
clus                            BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 13(7Q36.1) MUTATED                          32   128
  DEL PEAK 13(7Q36.1) WILD-TYPE                       138   608
D42V11, multiclass
                                  clus
vv                                 DEL PEAK 13(7Q36.1) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                           0
  ASIAN                                                     13
  BLACK OR AFRICAN AMERICAN                                 32
  WHITE                                                    128
                                  clus
vv                                 DEL PEAK 13(7Q36.1) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                             1
  ASIAN                                                       47
  BLACK OR AFRICAN AMERICAN                                  138
  WHITE                                                      608
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D42V12, binary
                               cls
clus                              0   1
  DEL PEAK 13(7Q36.1) MUTATED     4 158
  DEL PEAK 13(7Q36.1) WILD-TYPE  34 700
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 13(7Q36.1) MUTATED      4  158
  DEL PEAK 13(7Q36.1) WILD-TYPE   34  700
                        clus
vv                       DEL PEAK 13(7Q36.1) MUTATED
  HISPANIC OR LATINO                               4
  NOT HISPANIC OR LATINO                         158
                        clus
vv                       DEL PEAK 13(7Q36.1) WILD-TYPE
  HISPANIC OR LATINO                                34
  NOT HISPANIC OR LATINO                           700
[1] 2 2
[1] FALSE

Clustering(43) Variable = DEL PEAK 14(8P23.2) MUTATION ANALYSIS
D43V1, survival
                               sevent
clus2                             0   1
  DEL PEAK 14(8P23.2) MUTATED   464  81
  DEL PEAK 14(8P23.2) WILD-TYPE 452  47
  DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE 
                          545                           499 
  DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE 
                           81                            47 
$`DEL PEAK 14(8P23.2) MUTATED`
TCGA-4H-AAAK TCGA-5T-A9QA TCGA-A1-A0SG TCGA-A1-A0SI TCGA-A1-A0SK TCGA-A1-A0SN 
       11.44         9.96        14.27        20.88        31.79        39.32 
TCGA-A1-A0SO TCGA-A1-A0SP TCGA-A2-A04N TCGA-A2-A04P TCGA-A2-A04Q TCGA-A2-A04T 
       28.01        19.20       104.81        18.02        78.41        73.84 
TCGA-A2-A04U TCGA-A2-A04X TCGA-A2-A0CL TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CU 
       87.25        55.43        99.12       114.81        92.48         5.19 
TCGA-A2-A0CW TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D4 TCGA-A2-A0EQ TCGA-A2-A0ER 
      107.93        67.33        34.55        25.22        79.76        74.40 
TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0SV TCGA-A2-A0SX 
       34.29        31.82        61.94        24.72        27.12        50.43 
TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T3 TCGA-A2-A0T7 TCGA-A2-A0YH TCGA-A2-A0YJ 
       17.52        17.13        49.84        20.75        21.67        18.61 
TCGA-A2-A0YK TCGA-A2-A0YM TCGA-A2-A0YT TCGA-A2-A1FW TCGA-A2-A1FX TCGA-A2-A1G4 
       19.33        31.73        23.77        17.36        60.72        19.56 
TCGA-A2-A259 TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XU 
       52.47        18.15       105.34        33.93        83.01        29.98 
TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A4RW TCGA-A2-A4S3 TCGA-A7-A0CE TCGA-A7-A0CJ 
       34.98        50.37         7.30        21.90        35.31        30.61 
TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DC TCGA-A7-A13D TCGA-A7-A13E TCGA-A7-A26G 
       37.45        35.67        29.79        31.73        20.19        23.74 
TCGA-A7-A26H TCGA-A7-A26J TCGA-A7-A2KD TCGA-A7-A3IZ TCGA-A7-A3J1 TCGA-A7-A426 
       23.80        20.61        22.32        10.59        11.28        11.97 
TCGA-A7-A4SA TCGA-A7-A4SE TCGA-A7-A4SF TCGA-A7-A56D TCGA-A7-A5ZV TCGA-A7-A6VV 
       14.93        21.17        17.92        14.73        12.10        10.29 
TCGA-A7-A6VW TCGA-A7-A6VY TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06R 
        9.37         8.75        13.02        13.02         1.02        17.98 
TCGA-A8-A06T TCGA-A8-A06U TCGA-A8-A06X TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A076 
       53.06        29.03        31.00         1.02        17.03        53.98 
TCGA-A8-A079 TCGA-A8-A07B TCGA-A8-A07E TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07O 
        9.01        43.00        19.99        18.97        14.01         9.99 
TCGA-A8-A07P TCGA-A8-A07S TCGA-A8-A07W TCGA-A8-A082 TCGA-A8-A084 TCGA-A8-A085 
       10.98         7.99         9.99        18.05        15.06        36.95 
TCGA-A8-A086 TCGA-A8-A08F TCGA-A8-A08G TCGA-A8-A08J TCGA-A8-A08O TCGA-A8-A08P 
       13.02        33.01        19.96        37.05        31.00        31.00 
TCGA-A8-A08R TCGA-A8-A08S TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A08Z TCGA-A8-A091 
        0.99        33.01       112.08        43.00        40.01        33.01 
TCGA-A8-A092 TCGA-A8-A097 TCGA-A8-A09A TCGA-A8-A09K TCGA-A8-A09M TCGA-A8-A09N 
       30.97        12.00         9.99        29.98        33.07         1.02 
TCGA-A8-A09Q TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A0A7 TCGA-AC-A23H TCGA-AC-A2FO 
       25.02         8.98        19.04         0.99         5.72        50.70 
TCGA-AC-A2QJ TCGA-AC-A3QP TCGA-AC-A3TN TCGA-AC-A3W5 TCGA-AC-A3YI TCGA-AC-A7VB 
        2.27        22.19        14.99        16.57        23.24         8.22 
TCGA-AC-A8OP TCGA-AN-A03Y TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A04D 
       20.19         0.33         0.62         2.96         1.78         1.71 
TCGA-AN-A0AJ TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FD 
        9.96         0.16         0.33         0.33         0.33         6.44 
TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FX TCGA-AN-A0FY TCGA-AN-A0FZ 
        6.28         7.04         0.33         0.33         0.33         0.33 
TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XU 
        0.33         0.33        12.33         0.33         0.33         0.33 
TCGA-AN-A0XV TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A0J2 
        5.33        66.77        81.63        95.70        68.75        32.78 
TCGA-AO-A0J3 TCGA-AO-A0J4 TCGA-AO-A0J5 TCGA-AO-A0J6 TCGA-AO-A0J9 TCGA-AO-A0JB 
       21.40        52.18        26.04        37.48        53.03        50.70 
TCGA-AO-A0JE TCGA-AO-A0JG TCGA-AO-A0JM TCGA-AO-A124 TCGA-AO-A126 TCGA-AO-A129 
       76.77        26.24        71.80       102.58       108.72       108.03 
TCGA-AO-A12D TCGA-AO-A12G TCGA-AO-A1KP TCGA-AO-A1KQ TCGA-AO-A1KR TCGA-AO-A1KT 
       64.04        41.62        82.62        61.87        70.39        17.79 
TCGA-AQ-A04L TCGA-AQ-A0Y5 TCGA-AQ-A1H2 TCGA-AQ-A54O TCGA-AR-A0TP TCGA-AR-A0TS 
      130.09         5.65        15.62        32.91       111.32        74.79 
TCGA-AR-A0TT TCGA-AR-A0TV TCGA-AR-A0TW TCGA-AR-A0TX TCGA-AR-A0TY TCGA-AR-A0U0 
       86.66        42.35        98.93        64.83        55.86        65.36 
TCGA-AR-A0U1 TCGA-AR-A0U2 TCGA-AR-A0U3 TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AM 
      101.95        83.87       114.02        52.77        51.25        76.11 
TCGA-AR-A1AN TCGA-AR-A1AP TCGA-AR-A1AR TCGA-AR-A1AS TCGA-AR-A1AW TCGA-AR-A1AX 
       43.73        39.98        17.23        37.81        63.62        62.14 
TCGA-AR-A24H TCGA-AR-A24K TCGA-AR-A24L TCGA-AR-A24Q TCGA-AR-A24S TCGA-AR-A24U 
      160.90        50.89        94.22       104.28        97.84        53.36 
TCGA-AR-A24V TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A251 TCGA-AR-A254 TCGA-AR-A255 
       85.35        79.00        89.00        78.48        72.76        58.92 
TCGA-AR-A256 TCGA-AR-A2LE TCGA-AR-A2LK TCGA-AR-A2LL TCGA-AR-A2LO TCGA-AR-A2LR 
       93.83       143.21        54.21        66.15        39.39        20.38 
TCGA-AR-A5QN TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I9 TCGA-B6-A0IA 
       16.04        10.59        77.62       143.38        12.13       220.90 
TCGA-B6-A0IG TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IQ 
      146.50       176.98        18.77       126.12        84.59       140.88 
TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RL TCGA-B6-A0RM TCGA-B6-A0RO 
      211.56        68.45       189.01        81.17        78.02       162.05 
TCGA-B6-A0RS TCGA-B6-A0RU TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WV 
      100.70       131.21       157.41        97.48       188.68        79.63 
TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WY TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KC 
       18.35        21.47       113.79        68.94        58.88        43.59 
TCGA-B6-A1KF TCGA-B6-A1KN TCGA-B6-A401 TCGA-B6-A402 TCGA-B6-A408 TCGA-B6-A40C 
      101.52       139.17        85.35        74.99        68.12        71.15 
TCGA-BH-A0AV TCGA-BH-A0AY TCGA-BH-A0B2 TCGA-BH-A0B4 TCGA-BH-A0B6 TCGA-BH-A0B7 
       59.84        25.55        40.83        39.16        56.94        56.98 
TCGA-BH-A0BG TCGA-BH-A0BL TCGA-BH-A0BP TCGA-BH-A0BR TCGA-BH-A0BT TCGA-BH-A0BV 
       24.85        44.05        48.69        53.69        45.57        49.94 
TCGA-BH-A0BW TCGA-BH-A0C0 TCGA-BH-A0C7 TCGA-BH-A0DI TCGA-BH-A0DL TCGA-BH-A0E2 
       11.67        41.75        42.90        22.13        48.23        14.30 
TCGA-BH-A0E6 TCGA-BH-A0E7 TCGA-BH-A0EB TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0H0 
        9.63        44.81        24.49        31.00        24.43        15.16 
TCGA-BH-A0H6 TCGA-BH-A0H7 TCGA-BH-A0HB TCGA-BH-A0HK TCGA-BH-A0HU TCGA-BH-A0HW 
       24.56        23.08        26.50         5.85        12.89        51.32 
TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W5 TCGA-BH-A0WA 
       27.25        50.79         5.59        23.93        42.35        23.05 
TCGA-BH-A18F TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18N 
        8.81         7.23        20.12        90.84        26.66        37.74 
TCGA-BH-A18S TCGA-BH-A18T TCGA-BH-A18V TCGA-BH-A1EN TCGA-BH-A1EO TCGA-BH-A1EW 
       66.05         7.36        51.16        69.93        91.99        55.69 
TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F2 TCGA-BH-A1F5 TCGA-BH-A1F6 TCGA-BH-A1F8 
       17.69        25.81        31.53        89.16        97.48        24.66 
TCGA-BH-A1FB TCGA-BH-A1FC TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH 
      120.62       114.15        33.17        74.73       122.89        36.92 
TCGA-BH-A1FN TCGA-BH-A1FU TCGA-BH-A201 TCGA-BH-A203 TCGA-BH-A204 TCGA-BH-A208 
       72.07        72.07        28.14        38.60        83.31        57.83 
TCGA-BH-A209 TCGA-BH-A42V TCGA-BH-A5J0 TCGA-BH-A8FZ TCGA-BH-AB28 TCGA-C8-A12L 
      130.16         8.94        23.51        18.87         9.44        11.93 
TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12U 
       11.77        11.77        12.66        11.77        12.66        12.66 
TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A12Z TCGA-C8-A131 TCGA-C8-A132 TCGA-C8-A134 
       12.66        12.66         0.39         2.24         1.87         1.12 
TCGA-C8-A135 TCGA-C8-A138 TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HK TCGA-C8-A1HL 
        1.05         4.08        11.34        11.28        12.03        10.42 
TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A26W TCGA-C8-A26X TCGA-C8-A273 TCGA-C8-A278 
        2.30         3.25         0.23         0.36         9.67         9.50 
TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A3M8 TCGA-C8-A8HP TCGA-C8-A8HQ TCGA-C8-A8HR 
       12.20         0.99         0.23        13.02        12.49        13.41 
TCGA-C8-A9FZ TCGA-D8-A13Y TCGA-D8-A13Z TCGA-D8-A140 TCGA-D8-A142 TCGA-D8-A143 
       19.46        11.90        20.88        13.25        13.97        14.17 
TCGA-D8-A145 TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JD 
       13.48        14.17        17.49        18.71        15.78        18.15 
TCGA-D8-A1JG TCGA-D8-A1JI TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JM 
       12.03        18.97        20.09        20.12        20.09        19.40 
TCGA-D8-A1JP TCGA-D8-A1JT TCGA-D8-A1X6 TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XD 
       21.01        13.32        17.79        25.74        23.90        17.16 
TCGA-D8-A1XJ TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XQ TCGA-D8-A1XS TCGA-D8-A1XT 
       21.83        19.92        17.69        16.41        16.31         6.35 
TCGA-D8-A1XU TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A1Y2 TCGA-D8-A1Y3 TCGA-D8-A27F 
       12.99        15.32        15.52        14.24        14.14        16.04 
TCGA-D8-A27H TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27R TCGA-D8-A27W 
       13.05        16.41        13.48         4.80        10.09        12.26 
TCGA-D8-A3Z6 TCGA-D8-A73U TCGA-E2-A105 TCGA-E2-A108 TCGA-E2-A10A TCGA-E2-A10C 
       18.51        16.18        43.00        27.52        40.41        40.11 
TCGA-E2-A14N TCGA-E2-A14P TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14W 
       47.15        40.96        33.17        33.30        43.33        32.02 
TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A158 
       31.96        28.60        18.51        25.41        27.12        14.79 
TCGA-E2-A15A TCGA-E2-A15C TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15H TCGA-E2-A15J 
       23.34        22.82        20.71        21.63        12.92        19.40 
TCGA-E2-A15K TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B5 
        9.04        17.06        14.07        60.53        53.62        32.35 
TCGA-E2-A1BC TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IH TCGA-E2-A1II TCGA-E2-A1IN 
       16.47        38.30        37.41        33.73        33.70        22.19 
TCGA-E2-A1IO TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L8 TCGA-E2-A1LA TCGA-E2-A1LB 
       20.98        54.18        27.42        39.62        24.59        40.47 
TCGA-E2-A1LE TCGA-E2-A1LG TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A1LL TCGA-E2-A2P5 
       28.90        18.87       102.61         8.75        43.04        16.93 
TCGA-E2-A56Z TCGA-E2-A574 TCGA-E2-A576 TCGA-E2-A9RU TCGA-E9-A1N6 TCGA-E9-A1N8 
        8.28        26.56        34.29        12.85        13.48        12.00 
TCGA-E9-A1N9 TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NF TCGA-E9-A1NI TCGA-E9-A1R2 
       13.12        39.55        12.59        35.24         9.86        34.95 
TCGA-E9-A1R5 TCGA-E9-A1R7 TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RH TCGA-E9-A226 
        3.02        21.21        34.65         6.58        34.59        34.13 
TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A22D TCGA-E9-A22E 
       12.53        13.32        39.09        22.75        41.03        12.89 
TCGA-E9-A244 TCGA-E9-A248 TCGA-E9-A2JS TCGA-E9-A3QA TCGA-E9-A54Y TCGA-E9-A5UP 
        0.69         1.94        29.72        30.18        23.84        14.40 
TCGA-EW-A1IX TCGA-EW-A1J5 TCGA-EW-A1J6 TCGA-EW-A1OV TCGA-EW-A1OW TCGA-EW-A1OY 
       39.72        15.68        28.77        25.94        22.82        29.85 
TCGA-EW-A1OZ TCGA-EW-A1P0 TCGA-EW-A1P3 TCGA-EW-A1P6 TCGA-EW-A1P8 TCGA-EW-A1PA 
       40.41        41.13        52.96        18.48         7.86        18.90 
TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PF TCGA-EW-A1PH TCGA-EW-A2FR TCGA-EW-A2FS 
       13.94        10.52        14.43        19.96        55.00        52.73 
TCGA-EW-A2FV TCGA-EW-A3U0 TCGA-EW-A424 TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DB 
       25.91        17.49        23.51        59.57       216.76        79.10 
TCGA-GM-A2DD TCGA-GM-A2DF TCGA-GM-A2DO TCGA-GM-A3NW TCGA-GM-A3XL TCGA-GM-A5PV 
       75.02        70.85        85.35       110.50        69.30        13.55 
TCGA-HN-A2OB TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LD-A7W5 TCGA-LD-A7W6 TCGA-LL-A440 
       62.43        11.84        11.57         7.10        13.28        24.95 
TCGA-LL-A441 TCGA-LL-A50Y TCGA-LL-A5YM TCGA-LL-A5YO TCGA-LL-A5YP TCGA-LL-A6FQ 
       11.44        25.05        15.32        14.47        14.79         2.63 
TCGA-LL-A6FR TCGA-LL-A73Y TCGA-LL-A73Z TCGA-LL-A7T0 TCGA-LL-A8F5 TCGA-LL-A9Q3 
       16.08        15.68         7.46        12.36        14.73        14.07 
TCGA-OL-A5D7 TCGA-OL-A5RW TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66J 
       58.52        36.36        24.72        22.32        20.38        65.62 
TCGA-OL-A66P TCGA-OL-A6VR TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE TCGA-S3-A6ZH 
       14.07        40.11        47.01        64.21        86.96        16.93 
TCGA-S3-AA10 TCGA-S3-AA12 TCGA-S3-AA14 TCGA-S3-AA17 TCGA-UL-AAZ6 TCGA-UU-A93S 
       15.39        15.35        14.96        13.94        17.03         3.81 
TCGA-WT-AB41 TCGA-WT-AB44 TCGA-XX-A899 TCGA-XX-A89A TCGA-Z7-A8R6 
       52.96        29.03        15.35        16.04       107.05 

$`DEL PEAK 14(8P23.2) WILD-TYPE`
TCGA-3C-AAAU TCGA-3C-AALI TCGA-3C-AALJ TCGA-3C-AALK TCGA-5L-AAT0 TCGA-5L-AAT1 
      129.14       131.67        42.81        40.14        48.56        48.36 
TCGA-A1-A0SB TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SH TCGA-A1-A0SJ 
        8.52        14.37        43.43        48.10        47.24        13.68 
TCGA-A1-A0SM TCGA-A1-A0SQ TCGA-A2-A04R TCGA-A2-A04V TCGA-A2-A04W TCGA-A2-A04Y 
        7.96        18.21       121.94        63.12       101.98        36.13 
TCGA-A2-A0CK TCGA-A2-A0CM TCGA-A2-A0CQ TCGA-A2-A0CR TCGA-A2-A0CS TCGA-A2-A0CT 
      136.73        24.79        88.60       107.93        75.55        75.25 
TCGA-A2-A0CV TCGA-A2-A0CX TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0EM TCGA-A2-A0EN 
       98.99        56.81        33.76        61.58       101.72       134.40 
TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0ES TCGA-A2-A0ET TCGA-A2-A0EY TCGA-A2-A0ST 
       80.28       107.61        72.00        35.05        63.29        99.19 
TCGA-A2-A0SU TCGA-A2-A0SW TCGA-A2-A0SY TCGA-A2-A0T2 TCGA-A2-A0T4 TCGA-A2-A0T5 
       54.64        44.88        44.28         8.38        20.52        17.46 
TCGA-A2-A0T6 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YE TCGA-A2-A0YF TCGA-A2-A0YG 
       18.90        32.55        25.28        18.21        50.47        21.90 
TCGA-A2-A0YI TCGA-A2-A0YL TCGA-A2-A1FV TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G1 
       49.48        48.46        23.47        22.45        20.25        19.20 
TCGA-A2-A1G6 TCGA-A2-A25A TCGA-A2-A25B TCGA-A2-A25C TCGA-A2-A25F TCGA-A2-A3KC 
       16.47       107.70        42.44        17.19        10.59        20.88 
TCGA-A2-A3KD TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX TCGA-A2-A3Y0 TCGA-A2-A4RX 
       39.65        32.75        49.48        47.31        38.37        24.39 
TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A7-A0CD TCGA-A7-A0CG 
       21.30        23.21        26.96        21.14        38.30        34.29 
TCGA-A7-A0CH TCGA-A7-A0DB TCGA-A7-A13F TCGA-A7-A13G TCGA-A7-A13H TCGA-A7-A26E 
       35.47        33.11        25.15        23.61        29.56        31.36 
TCGA-A7-A26F TCGA-A7-A26I TCGA-A7-A3IY TCGA-A7-A3J0 TCGA-A7-A3RF TCGA-A7-A425 
       24.26        21.73        11.34        10.29        13.41        14.70 
TCGA-A7-A4SB TCGA-A7-A4SD TCGA-A7-A5ZW TCGA-A7-A5ZX TCGA-A7-A6VX TCGA-A8-A06Y 
       13.74        14.50        10.72        11.05        10.42        26.01 
TCGA-A8-A07F TCGA-A8-A07J TCGA-A8-A07L TCGA-A8-A07R TCGA-A8-A07U TCGA-A8-A07Z 
       18.97        12.00        32.05         8.98        24.99        45.07 
TCGA-A8-A08A TCGA-A8-A08B TCGA-A8-A08C TCGA-A8-A08I TCGA-A8-A08L TCGA-A8-A093 
        0.99        38.01        28.96        12.00         9.99        17.95 
TCGA-A8-A095 TCGA-A8-A099 TCGA-A8-A09B TCGA-A8-A09C TCGA-A8-A09D TCGA-A8-A09E 
       41.98         9.99        12.00         1.02        50.04        49.05 
TCGA-A8-A09I TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0A2 
       45.07        15.02         0.99        14.01        12.00        19.04 
TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C 
       13.02        21.04        27.02        17.03        38.04         0.95 
TCGA-AC-A23E TCGA-AC-A23G TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FB 
        2.37        10.85         1.48        38.53        99.35        40.57 
TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2QH TCGA-AC-A2QI 
       55.43        36.99        38.79        26.04        33.04         0.92 
TCGA-AC-A3BB TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3W6 TCGA-AC-A3YJ TCGA-AC-A5XS 
       32.45        16.31        14.83        19.79        24.79         1.55 
TCGA-AC-A62V TCGA-AC-A62X TCGA-AC-A62Y TCGA-AC-A6IV TCGA-AC-A6IW TCGA-AC-A6IX 
       11.44        13.71        17.42        18.67        13.58        12.26 
TCGA-AC-A6NO TCGA-AC-A7VC TCGA-AC-A8OQ TCGA-AC-A8OR TCGA-AC-A8OS TCGA-AN-A03X 
        1.68         0.03         1.12         1.32         2.30         0.33 
TCGA-AN-A041 TCGA-AN-A046 TCGA-AN-A0AK TCGA-AN-A0AL TCGA-AN-A0FF TCGA-AN-A0FJ 
        0.23         0.33         7.36         6.51         5.65         7.96 
TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FN TCGA-AN-A0FW TCGA-AN-A0XP TCGA-AN-A0XR 
        7.00         7.59         7.17         0.36         0.30         0.33 
TCGA-AN-A0XW TCGA-AO-A03L TCGA-AO-A03M TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V 
        5.59        80.28        61.35        47.87        58.95        29.13 
TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0JA TCGA-AO-A0JC TCGA-AO-A0JD TCGA-AO-A0JF 
       20.32        22.36        21.53        50.86        72.00        21.37 
TCGA-AO-A0JI TCGA-AO-A0JJ TCGA-AO-A0JL TCGA-AO-A125 TCGA-AO-A128 TCGA-AO-A12A 
       50.24        62.04        55.33        99.25       106.78        90.58 
TCGA-AO-A12B TCGA-AO-A12E TCGA-AO-A12F TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KS 
       98.27        57.30        48.36        28.37        14.73         0.53 
TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A1H3 TCGA-AQ-A54N TCGA-AQ-A7U7 TCGA-AR-A0TQ 
       24.79        26.93        32.52         2.56        19.20        73.64 
TCGA-AR-A0TR TCGA-AR-A0TZ TCGA-AR-A0U4 TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AL 
        5.26       107.24        85.97        75.55        61.84        48.82 
TCGA-AR-A1AO TCGA-AR-A1AQ TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A1AY TCGA-AR-A24M 
       43.56        43.07        76.21        61.28        33.73        96.89 
TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24R TCGA-AR-A24T TCGA-AR-A24W 
       78.51        84.20         2.76        87.22        76.01        50.96 
TCGA-AR-A24X TCGA-AR-A252 TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LM TCGA-AR-A2LN 
       83.77        73.18        20.25        62.86        52.11        38.17 
TCGA-AR-A2LQ TCGA-AR-A5QM TCGA-AR-A5QP TCGA-B6-A0I5 TCGA-B6-A0IB TCGA-B6-A0IC 
       40.54        54.74        20.45       149.59       129.57        50.70 
TCGA-B6-A0IE TCGA-B6-A0IH TCGA-B6-A0IO TCGA-B6-A0IP TCGA-B6-A0RI TCGA-B6-A0RN 
       65.72       112.37       110.14       110.93       234.28       172.96 
TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 
      102.77       140.48        89.46       129.57       129.70       186.48 
TCGA-B6-A0X4 TCGA-B6-A1KI TCGA-B6-A2IU TCGA-B6-A40B TCGA-BH-A0AU TCGA-BH-A0AW 
       28.27        73.51       170.17       103.63        24.53        20.45 
TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B3 TCGA-BH-A0B5 TCGA-BH-A0B9 TCGA-BH-A0BA 
       28.50        46.95        39.55        48.36        51.68        37.22 
TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BF TCGA-BH-A0BJ TCGA-BH-A0BM TCGA-BH-A0BO 
       32.02        18.21        25.71        21.70        61.68        35.67 
TCGA-BH-A0BQ TCGA-BH-A0BS TCGA-BH-A0BZ TCGA-BH-A0C1 TCGA-BH-A0C3 TCGA-BH-A0DD 
       27.19        53.95        49.05        44.02        48.13        45.83 
TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DK TCGA-BH-A0DO TCGA-BH-A0DP 
       31.17        23.44        38.01        13.91        17.26        15.65 
TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ 
        3.22         2.56        38.47        67.86        47.41        16.27 
TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E9 TCGA-BH-A0EA TCGA-BH-A0GY TCGA-BH-A0GZ 
        4.41        15.68        46.19        32.58        30.35        10.78 
TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0HI TCGA-BH-A0HO 
       37.78        35.51        41.00        52.96        20.38         2.50 
TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0W4 TCGA-BH-A0W7 TCGA-BH-A18G TCGA-BH-A18M 
       13.61        36.85        24.95        44.81         2.01        72.56 
TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18R TCGA-BH-A18U TCGA-BH-A1ES TCGA-BH-A1ET 
       30.28        55.63        37.55        51.39       113.82        82.85 
TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EX TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FM 
       42.28        12.00        49.58        63.35        55.00        45.63 
TCGA-BH-A1FR TCGA-BH-A202 TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42T 
      144.59        26.14        10.65         6.44        20.12        10.52 
TCGA-BH-A42U TCGA-BH-A5IZ TCGA-BH-A6R8 TCGA-BH-A6R9 TCGA-BH-A8FY TCGA-BH-A8G0 
      109.28        18.64         9.63         5.26         9.70        21.76 
TCGA-C8-A12V TCGA-C8-A130 TCGA-C8-A137 TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HJ 
       12.66         3.16         4.11        12.33        10.92         0.16 
TCGA-C8-A26V TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A274 TCGA-C8-A275 TCGA-C8-A3M7 
        0.30         0.43         8.28         9.53         0.03         0.03 
TCGA-D8-A141 TCGA-D8-A146 TCGA-D8-A147 TCGA-D8-A1JA TCGA-D8-A1JE TCGA-D8-A1JF 
       20.58        21.14        19.20        16.50        18.90        12.03 
TCGA-D8-A1JH TCGA-D8-A1JN TCGA-D8-A1JS TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X7 
       14.01        20.38        12.20        14.70        18.58        16.73 
TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XF TCGA-D8-A1XG TCGA-D8-A1XK 
       27.58        18.15        12.39        15.22        14.73        14.50 
TCGA-D8-A1XO TCGA-D8-A1XR TCGA-D8-A1XV TCGA-D8-A1XW TCGA-D8-A1XY TCGA-D8-A1Y1 
       15.55        15.85        15.16        12.66        16.54         9.93 
TCGA-D8-A27E TCGA-D8-A27G TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27P TCGA-D8-A27T 
       17.42        13.45        14.43         9.44         0.76        13.08 
TCGA-D8-A27V TCGA-D8-A3Z5 TCGA-D8-A4Z1 TCGA-D8-A73W TCGA-D8-A73X TCGA-E2-A107 
       12.53        33.37        21.67         8.02        12.10        34.42 
TCGA-E2-A109 TCGA-E2-A10B TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14O TCGA-E2-A14Q 
       46.59        37.51        28.44        28.87        44.68        38.24 
TCGA-E2-A14R TCGA-E2-A14V TCGA-E2-A153 TCGA-E2-A154 TCGA-E2-A155 TCGA-E2-A156 
       38.60        34.26        23.24        19.43        21.04        23.87 
TCGA-E2-A159 TCGA-E2-A15D TCGA-E2-A15G TCGA-E2-A15I TCGA-E2-A15L TCGA-E2-A15M 
       25.05        17.29        18.21        17.42        20.58        11.05 
TCGA-E2-A15O TCGA-E2-A15P TCGA-E2-A15T TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B6 
       13.02        19.56        14.99        53.03        33.01        28.50 
TCGA-E2-A1BD TCGA-E2-A1IG TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IU 
       17.10        32.78        28.44        22.65         3.88        11.08 
TCGA-E2-A1L9 TCGA-E2-A1LH TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A570 TCGA-E2-A573 
       19.66       106.75         5.52        15.72        30.61        34.92 
TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1NA TCGA-E9-A1NE TCGA-E9-A1NG 
       34.82        32.88        36.82        36.56        35.77        25.84 
TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R6 TCGA-E9-A1RA 
       11.90        28.27         2.56         6.12         2.76        32.09 
TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RD TCGA-E9-A1RG TCGA-E9-A1RI TCGA-E9-A227 
       32.09        40.24         1.12        21.27        35.64        32.05 
TCGA-E9-A22G TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A247 TCGA-E9-A249 TCGA-E9-A24A 
       23.51        20.71        17.06        27.22         7.13        24.56 
TCGA-E9-A295 TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3X8 TCGA-E9-A54X 
        0.72         0.76        26.07        18.41        15.72        12.33 
TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UO TCGA-E9-A6HE TCGA-EW-A1IW TCGA-EW-A1IY 
       14.70         0.79        13.81        15.39        12.20         8.48 
TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1OX TCGA-EW-A1P1 
       18.21        18.90        13.25        16.57        29.95        39.78 
TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A1P7 TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A1PG 
       29.82        23.11        30.08        19.99         6.15        34.55 
TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A423 TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2DC 
       22.09        34.03        10.16         7.40       109.87        83.34 
TCGA-GM-A2DH TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN 
       72.10        85.15        86.96       115.69       106.06       101.62 
TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PX TCGA-HN-A2NL 
       38.20        43.73        66.38        72.03        18.12         2.60 
TCGA-LD-A66U TCGA-LD-A74U TCGA-LD-A9QF TCGA-LL-A442 TCGA-LL-A5YL TCGA-LL-A5YN 
       21.24        13.22        10.62        10.95        17.06        14.70 
TCGA-LL-A6FP TCGA-LL-A740 TCGA-LL-A7SZ TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 
       22.26        14.50        14.70        27.91        22.39         2.10 
TCGA-OL-A5D6 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RU TCGA-OL-A5RV TCGA-OL-A5RX 
       36.30        31.99        58.62        40.08        34.92        28.87 
TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66K TCGA-OL-A66L TCGA-OL-A66N TCGA-OL-A66O 
       26.70        23.47        41.92        42.77        26.04        17.36 
TCGA-OL-A6VO TCGA-OL-A6VQ TCGA-OL-A97C TCGA-PL-A8LX TCGA-PL-A8LY TCGA-PL-A8LZ 
       28.21        19.73         8.91         0.16         0.26         9.93 
TCGA-S3-A6ZF TCGA-S3-A6ZG TCGA-S3-AA0Z TCGA-S3-AA11 TCGA-S3-AA15 TCGA-W8-A86G 
       16.50        13.12        16.80        13.84        13.84        11.41 
TCGA-Z7-A8R5 
      108.07 

  DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE 
                         0.16                          0.03 
  DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE 
                       220.90                        234.28 
  DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE 
                        24.43                         24.79 
[1] "0.2 - 220.9 (24.4)" "0.0 - 234.3 (24.8)"
[1] "hr=" "1.4"
D43V2, continuous
                               vv
clus                            STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  DEL PEAK 14(8P23.2) MUTATED        47       44        5        0       179
  DEL PEAK 14(8P23.2) WILD-TYPE      42       37        3        3       174
                               vv
clus                            STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  DEL PEAK 14(8P23.2) MUTATED         128         1         80         15
  DEL PEAK 14(8P23.2) WILD-TYPE       117         1         70         14
                               vv
clus                            STAGE IIIC STAGE IV STAGE TIS STAGE X
  DEL PEAK 14(8P23.2) MUTATED           31       11         0       9
  DEL PEAK 14(8P23.2) WILD-TYPE         32        9         1       4
D43V3, multiclass
            clus
vv           DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  STAGE I                             47                            42
  STAGE IA                            44                            37
  STAGE IB                             5                             3
  STAGE II                             0                             3
  STAGE IIA                          179                           174
  STAGE IIB                          128                           117
  STAGE III                            1                             1
  STAGE IIIA                          80                            70
  STAGE IIIB                          15                            14
  STAGE IIIC                          31                            32
  STAGE IV                            11                             9
  STAGE TIS                            0                             1
  STAGE X                              9                             4
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                             T1  T2  T3  T4
  DEL PEAK 14(8P23.2) MUTATED   155 320  52  23
  DEL PEAK 14(8P23.2) WILD-TYPE 117 296  78  17
D43V4, multiclass
    clus
vv   DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  T1                         155                           117
  T2                         320                           296
  T3                          52                            78
  T4                          23                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                             N0  N1  N2  N3
  DEL PEAK 14(8P23.2) MUTATED   245 184  72  37
  DEL PEAK 14(8P23.2) WILD-TYPE 256 166  45  38
D43V5, multiclass
    clus
vv   DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  N0                         245                           256
  N1                         184                           166
  N2                          72                            45
  N3                          37                            38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D43V6, binary
                               cls
clus                              0   1
  DEL PEAK 14(8P23.2) MUTATED   468  11
  DEL PEAK 14(8P23.2) WILD-TYPE 411  10
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 14(8P23.2) MUTATED    468   11
  DEL PEAK 14(8P23.2) WILD-TYPE  411   10
   clus
vv  DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  0                         468                           411
  1                          11                            10
[1] 2 2
[1] FALSE
D43V7, binary
                               cls
clus                              0   1
  DEL PEAK 14(8P23.2) MUTATED   545   7
  DEL PEAK 14(8P23.2) WILD-TYPE 506   4
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 14(8P23.2) MUTATED    545    7
  DEL PEAK 14(8P23.2) WILD-TYPE  506    4
        clus
vv       DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  FEMALE                         545                           506
  MALE                             7                             4
[1] 2 2
[1] FALSE
                               vv
clus                            INFILTRATING CARCINOMA NOS
  DEL PEAK 14(8P23.2) MUTATED                            1
  DEL PEAK 14(8P23.2) WILD-TYPE                          0
                               vv
clus                            INFILTRATING DUCTAL CARCINOMA
  DEL PEAK 14(8P23.2) MUTATED                             441
  DEL PEAK 14(8P23.2) WILD-TYPE                           322
                               vv
clus                            INFILTRATING LOBULAR CARCINOMA
  DEL PEAK 14(8P23.2) MUTATED                               64
  DEL PEAK 14(8P23.2) WILD-TYPE                            128
                               vv
clus                            MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  DEL PEAK 14(8P23.2) MUTATED                     3                     1
  DEL PEAK 14(8P23.2) WILD-TYPE                   3                     3
                               vv
clus                            MIXED HISTOLOGY (PLEASE SPECIFY)
  DEL PEAK 14(8P23.2) MUTATED                                 11
  DEL PEAK 14(8P23.2) WILD-TYPE                               19
                               vv
clus                            MUCINOUS CARCINOMA OTHER  SPECIFY
  DEL PEAK 14(8P23.2) MUTATED                    4             26
  DEL PEAK 14(8P23.2) WILD-TYPE                 13             22
D43V8, multiclass
                                  clus
vv                                 DEL PEAK 14(8P23.2) MUTATED
  INFILTRATING CARCINOMA NOS                                 1
  INFILTRATING DUCTAL CARCINOMA                            441
  INFILTRATING LOBULAR CARCINOMA                            64
  MEDULLARY CARCINOMA                                        3
  METAPLASTIC CARCINOMA                                      1
  MIXED HISTOLOGY (PLEASE SPECIFY)                          11
  MUCINOUS CARCINOMA                                         4
  OTHER  SPECIFY                                            26
                                  clus
vv                                 DEL PEAK 14(8P23.2) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                   0
  INFILTRATING DUCTAL CARCINOMA                              322
  INFILTRATING LOBULAR CARCINOMA                             128
  MEDULLARY CARCINOMA                                          3
  METAPLASTIC CARCINOMA                                        3
  MIXED HISTOLOGY (PLEASE SPECIFY)                            19
  MUCINOUS CARCINOMA                                          13
  OTHER  SPECIFY                                              22
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D43V9, binary
                               cls
clus                              0   1
  DEL PEAK 14(8P23.2) MUTATED   148 404
  DEL PEAK 14(8P23.2) WILD-TYPE 140 370
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 14(8P23.2) MUTATED    148  404
  DEL PEAK 14(8P23.2) WILD-TYPE  140  370
     clus
vv    DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  NO                          148                           140
  YES                         404                           370
[1] 2 2
[1] FALSE
D43V10, continuous
                               vv
clus                            AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 14(8P23.2) MUTATED                                  1    41
  DEL PEAK 14(8P23.2) WILD-TYPE                                0    19
                               vv
clus                            BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 14(8P23.2) MUTATED                          99   356
  DEL PEAK 14(8P23.2) WILD-TYPE                        71   380
D43V11, multiclass
                                  clus
vv                                 DEL PEAK 14(8P23.2) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                           1
  ASIAN                                                     41
  BLACK OR AFRICAN AMERICAN                                 99
  WHITE                                                    356
                                  clus
vv                                 DEL PEAK 14(8P23.2) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                             0
  ASIAN                                                       19
  BLACK OR AFRICAN AMERICAN                                   71
  WHITE                                                      380
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D43V12, binary
                               cls
clus                              0   1
  DEL PEAK 14(8P23.2) MUTATED    18 448
  DEL PEAK 14(8P23.2) WILD-TYPE  20 410
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 14(8P23.2) MUTATED     18  448
  DEL PEAK 14(8P23.2) WILD-TYPE   20  410
                        clus
vv                       DEL PEAK 14(8P23.2) MUTATED
  HISPANIC OR LATINO                              18
  NOT HISPANIC OR LATINO                         448
                        clus
vv                       DEL PEAK 14(8P23.2) WILD-TYPE
  HISPANIC OR LATINO                                20
  NOT HISPANIC OR LATINO                           410
[1] 2 2
[1] FALSE

Clustering(44) Variable = DEL PEAK 15(8P11.21) MUTATION ANALYSIS
D44V1, survival
                                sevent
clus2                              0   1
  DEL PEAK 15(8P11.21) MUTATED   169  26
  DEL PEAK 15(8P11.21) WILD-TYPE 747 102
  DEL PEAK 15(8P11.21) MUTATED DEL PEAK 15(8P11.21) WILD-TYPE 
                           195                            849 
  DEL PEAK 15(8P11.21) MUTATED DEL PEAK 15(8P11.21) WILD-TYPE 
                            26                            102 
$`DEL PEAK 15(8P11.21) MUTATED`
TCGA-3C-AALJ TCGA-A1-A0SF TCGA-A1-A0SN TCGA-A1-A0SP TCGA-A2-A04P TCGA-A2-A04Q 
       42.81        48.10        39.32        19.20        18.02        78.41 
TCGA-A2-A04U TCGA-A2-A04X TCGA-A2-A04Y TCGA-A2-A0CL TCGA-A2-A0D1 TCGA-A2-A0EQ 
       87.25        55.43        36.13        99.12        34.55        79.76 
TCGA-A2-A0SV TCGA-A2-A0SX TCGA-A2-A0T1 TCGA-A2-A0YH TCGA-A2-A0YT TCGA-A2-A1FW 
       27.12        50.43        17.13        21.67        23.77        17.36 
TCGA-A2-A259 TCGA-A2-A25B TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A4S3 TCGA-A7-A0D9 
       52.47        42.44        34.98        50.37        21.90        37.45 
TCGA-A7-A13D TCGA-A7-A26G TCGA-A7-A4SA TCGA-A7-A4SE TCGA-A7-A6VV TCGA-A7-A6VY 
       31.73        23.74        14.93        21.17        10.29         8.75 
TCGA-A8-A06T TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A079 TCGA-A8-A07R TCGA-A8-A07S 
       53.06         1.02        17.03         9.01         8.98         7.99 
TCGA-A8-A08G TCGA-A8-A08J TCGA-A8-A08O TCGA-A8-A08X TCGA-A8-A097 TCGA-A8-A099 
       19.96        37.05        31.00        43.00        12.00         9.99 
TCGA-A8-A09I TCGA-A8-A09K TCGA-A8-A09N TCGA-A8-A09T TCGA-A8-A0A7 TCGA-AC-A23H 
       45.07        29.98         1.02        19.04         0.99         5.72 
TCGA-AC-A2QH TCGA-AC-A2QJ TCGA-AC-A3TN TCGA-AC-A3W5 TCGA-AC-A8OP TCGA-AN-A041 
       33.04         2.27        14.99        16.57        20.19         0.23 
TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A0AJ TCGA-AN-A0AM TCGA-AN-A0AS 
        0.62         2.96         1.78         9.96         0.16         0.33 
TCGA-AN-A0FD TCGA-AN-A0FL TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AO-A03V TCGA-AO-A0J4 
        6.44         7.59         7.04         0.33        29.13        52.18 
TCGA-AO-A0J5 TCGA-AO-A0J9 TCGA-AO-A0JE TCGA-AO-A0JG TCGA-AO-A124 TCGA-AO-A12D 
       26.04        53.03        76.77        26.24       102.58        64.04 
TCGA-AO-A1KT TCGA-AQ-A0Y5 TCGA-AQ-A1H2 TCGA-AR-A0TT TCGA-AR-A0TV TCGA-AR-A0TY 
       17.79         5.65        15.62        86.66        42.35        55.86 
TCGA-AR-A0U0 TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A24K TCGA-AR-A24S TCGA-AR-A24U 
       65.36        52.77        51.25        50.89        97.84        53.36 
TCGA-AR-A250 TCGA-AR-A254 TCGA-AR-A255 TCGA-B6-A0RH TCGA-B6-A0WY TCGA-B6-A1KN 
       89.00        72.76        58.92       189.01       113.79       139.17 
TCGA-BH-A0AU TCGA-BH-A0AV TCGA-BH-A0B7 TCGA-BH-A0BG TCGA-BH-A0BR TCGA-BH-A0BW 
       24.53        59.84        56.98        24.85        53.69        11.67 
TCGA-BH-A0EB TCGA-BH-A0EE TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A18F TCGA-BH-A18J 
       24.49        31.00         5.59        23.93         8.81        20.12 
TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1ES TCGA-BH-A1EY 
       90.84        26.66        51.39        51.16       113.82        17.69 
TCGA-BH-A1F8 TCGA-BH-A1FE TCGA-BH-A1FN TCGA-BH-A1FU TCGA-BH-A203 TCGA-BH-A5J0 
       24.66        74.73        72.07        72.07        38.60        23.51 
TCGA-BH-A8FZ TCGA-C8-A12U TCGA-C8-A12W TCGA-C8-A12Z TCGA-C8-A130 TCGA-C8-A131 
       18.87        12.66        12.66         0.39         3.16         2.24 
TCGA-C8-A135 TCGA-C8-A138 TCGA-C8-A1HL TCGA-C8-A8HQ TCGA-D8-A13Z TCGA-D8-A140 
        1.05         4.08        10.42        12.49        20.88        13.25 
TCGA-D8-A145 TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JG TCGA-D8-A1JJ TCGA-D8-A1JK 
       13.48        14.17        17.49        12.03        20.09        20.12 
TCGA-D8-A1JP TCGA-D8-A1X5 TCGA-D8-A1XL TCGA-D8-A1XQ TCGA-D8-A1XU TCGA-D8-A27L 
       21.01        18.58        19.92        16.41        12.99        16.41 
TCGA-D8-A3Z6 TCGA-D8-A73U TCGA-E2-A108 TCGA-E2-A14T TCGA-E2-A14V TCGA-E2-A14Y 
       18.51        16.18        27.52        33.30        34.26        28.60 
TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A15H TCGA-E2-A15J TCGA-E2-A1B5 
       18.51        25.41        27.12        12.92        19.40        32.35 
TCGA-E2-A1BC TCGA-E2-A1IF TCGA-E2-A1IH TCGA-E2-A1IO TCGA-E2-A1L8 TCGA-E2-A1LB 
       16.47        37.41        33.73        20.98        39.62        40.47 
TCGA-E2-A1LE TCGA-E2-A1LH TCGA-E2-A1LL TCGA-E9-A1N8 TCGA-E9-A1N9 TCGA-E9-A1ND 
       28.90       106.75        43.04        12.00        13.12        12.59 
TCGA-E9-A1NF TCGA-E9-A1NI TCGA-E9-A1R5 TCGA-E9-A1R7 TCGA-E9-A1RG TCGA-E9-A1RH 
       35.24         9.86         3.02        21.21        21.27        34.59 
TCGA-E9-A226 TCGA-E9-A22B TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A248 TCGA-EW-A1OV 
       34.13        22.75        41.03        12.89         1.94        25.94 
TCGA-EW-A1OW TCGA-EW-A1PE TCGA-EW-A1PH TCGA-EW-A2FR TCGA-EW-A2FV TCGA-EW-A3U0 
       22.82        10.52        19.96        55.00        25.91        17.49 
TCGA-EW-A424 TCGA-GM-A3XL TCGA-GM-A5PV TCGA-JL-A3YW TCGA-LL-A50Y TCGA-LL-A5YN 
       23.51        69.30        13.55        11.84        25.05        14.70 
TCGA-LL-A5YO TCGA-LL-A73Z TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-PE-A5DD TCGA-PE-A5DE 
       14.47         7.46        22.32        20.38        64.21        86.96 
TCGA-UL-AAZ6 TCGA-UU-A93S TCGA-WT-AB44 
       17.03         3.81        29.03 

$`DEL PEAK 15(8P11.21) WILD-TYPE`
TCGA-3C-AAAU TCGA-3C-AALI TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT0 TCGA-5L-AAT1 
      129.14       131.67        40.14        11.44        48.56        48.36 
TCGA-5T-A9QA TCGA-A1-A0SB TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SG TCGA-A1-A0SH 
        9.96         8.52        14.37        43.43        14.27        47.24 
TCGA-A1-A0SI TCGA-A1-A0SJ TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SO TCGA-A1-A0SQ 
       20.88        13.68        31.79         7.96        28.01        18.21 
TCGA-A2-A04N TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04V TCGA-A2-A04W TCGA-A2-A0CK 
      104.81       121.94        73.84        63.12       101.98       136.73 
TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CQ TCGA-A2-A0CR TCGA-A2-A0CS 
       24.79       114.81        92.48        88.60       107.93        75.55 
TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0CX TCGA-A2-A0D0 
       75.25         5.19        98.99       107.93        56.81        67.33 
TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0D4 TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO 
       33.76        61.58        25.22       101.72       134.40        80.28 
TCGA-A2-A0EP TCGA-A2-A0ER TCGA-A2-A0ES TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EV 
      107.61        74.40        72.00        35.05        34.29        31.82 
TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0EY TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SW 
       61.94        24.72        63.29        99.19        54.64        44.88 
TCGA-A2-A0SY TCGA-A2-A0T0 TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T4 TCGA-A2-A0T5 
       44.28        17.52         8.38        49.84        20.52        17.46 
TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YE TCGA-A2-A0YF 
       18.90        20.75        32.55        25.28        18.21        50.47 
TCGA-A2-A0YG TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A0YM 
       21.90        49.48        18.61        19.33        48.46        31.73 
TCGA-A2-A1FV TCGA-A2-A1FX TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G1 TCGA-A2-A1G4 
       23.47        60.72        22.45        20.25        19.20        19.56 
TCGA-A2-A1G6 TCGA-A2-A25A TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F 
       16.47       107.70        17.19        18.15       105.34        10.59 
TCGA-A2-A3KC TCGA-A2-A3KD TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XU TCGA-A2-A3XV 
       20.88        39.65        33.93        83.01        29.98        32.75 
TCGA-A2-A3XW TCGA-A2-A3XX TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4RY 
       49.48        47.31        38.37         7.30        24.39        21.30 
TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A7-A0CD TCGA-A7-A0CE TCGA-A7-A0CG 
       23.21        26.96        21.14        38.30        35.31        34.29 
TCGA-A7-A0CH TCGA-A7-A0CJ TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A0DC TCGA-A7-A13E 
       35.47        30.61        35.67        33.11        29.79        20.19 
TCGA-A7-A13F TCGA-A7-A13G TCGA-A7-A13H TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26H 
       25.15        23.61        29.56        31.36        24.26        23.80 
TCGA-A7-A26I TCGA-A7-A26J TCGA-A7-A2KD TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J0 
       21.73        20.61        22.32        11.34        10.59        10.29 
TCGA-A7-A3J1 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A426 TCGA-A7-A4SB TCGA-A7-A4SD 
       11.28        13.41        14.70        11.97        13.74        14.50 
TCGA-A7-A4SF TCGA-A7-A56D TCGA-A7-A5ZV TCGA-A7-A5ZW TCGA-A7-A5ZX TCGA-A7-A6VW 
       17.92        14.73        12.10        10.72        11.05         9.37 
TCGA-A7-A6VX TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06R TCGA-A8-A06U 
       10.42        13.02        13.02         1.02        17.98        29.03 
TCGA-A8-A06X TCGA-A8-A06Y TCGA-A8-A076 TCGA-A8-A07B TCGA-A8-A07E TCGA-A8-A07F 
       31.00        26.01        53.98        43.00        19.99        18.97 
TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07L TCGA-A8-A07O TCGA-A8-A07P 
       18.97        14.01        12.00        32.05         9.99        10.98 
TCGA-A8-A07U TCGA-A8-A07W TCGA-A8-A07Z TCGA-A8-A082 TCGA-A8-A084 TCGA-A8-A085 
       24.99         9.99        45.07        18.05        15.06        36.95 
TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08B TCGA-A8-A08C TCGA-A8-A08F TCGA-A8-A08I 
       13.02         0.99        38.01        28.96        33.01        12.00 
TCGA-A8-A08L TCGA-A8-A08P TCGA-A8-A08R TCGA-A8-A08S TCGA-A8-A08T TCGA-A8-A08Z 
        9.99        31.00         0.99        33.01       112.08        40.01 
TCGA-A8-A091 TCGA-A8-A092 TCGA-A8-A093 TCGA-A8-A095 TCGA-A8-A09A TCGA-A8-A09B 
       33.01        30.97        17.95        41.98         9.99        12.00 
TCGA-A8-A09C TCGA-A8-A09D TCGA-A8-A09E TCGA-A8-A09M TCGA-A8-A09Q TCGA-A8-A09R 
        1.02        50.04        49.05        33.07        25.02         8.98 
TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 
       15.02         0.99        14.01        12.00        19.04        13.02 
TCGA-A8-A0A6 TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23E 
       21.04        27.02        17.03        38.04         0.95         2.37 
TCGA-AC-A23G TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FF 
       10.85         1.48        38.53        99.35        40.57        55.43 
TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A2QI TCGA-AC-A3BB 
       36.99        38.79        26.04        50.70         0.92        32.45 
TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3W6 TCGA-AC-A3YI TCGA-AC-A3YJ 
       16.31        14.83        22.19        19.79        23.24        24.79 
TCGA-AC-A5XS TCGA-AC-A62V TCGA-AC-A62X TCGA-AC-A62Y TCGA-AC-A6IV TCGA-AC-A6IW 
        1.55        11.44        13.71        17.42        18.67        13.58 
TCGA-AC-A6IX TCGA-AC-A6NO TCGA-AC-A7VB TCGA-AC-A7VC TCGA-AC-A8OQ TCGA-AC-A8OR 
       12.26         1.68         8.22         0.03         1.12         1.32 
TCGA-AC-A8OS TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A046 TCGA-AN-A04D TCGA-AN-A0AK 
        2.30         0.33         0.33         0.33         1.71         7.36 
TCGA-AN-A0AL TCGA-AN-A0AR TCGA-AN-A0AT TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FK 
        6.51         0.33         0.33         5.65         7.96         7.00 
TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FW TCGA-AN-A0FX TCGA-AN-A0FY TCGA-AN-A0FZ 
        7.17         6.28         0.36         0.33         0.33         0.33 
TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS 
        0.33         0.33        12.33         0.30         0.33         0.33 
TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03L TCGA-AO-A03M 
        0.33         0.33         5.33         5.59        80.28        61.35 
TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03U 
       66.77        81.63        95.70        68.75        47.87        58.95 
TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J6 TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0JA 
       32.78        21.40        37.48        20.32        22.36        21.53 
TCGA-AO-A0JB TCGA-AO-A0JC TCGA-AO-A0JD TCGA-AO-A0JF TCGA-AO-A0JI TCGA-AO-A0JJ 
       50.70        50.86        72.00        21.37        50.24        62.04 
TCGA-AO-A0JL TCGA-AO-A0JM TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 TCGA-AO-A129 
       55.33        71.80        99.25       108.72       106.78       108.03 
TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12E TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A12H 
       90.58        98.27        57.30        48.36        41.62        28.37 
TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KQ TCGA-AO-A1KR TCGA-AO-A1KS TCGA-AQ-A04H 
       14.73        82.62        61.87        70.39         0.53        24.79 
TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A1H3 TCGA-AQ-A54N TCGA-AQ-A54O TCGA-AQ-A7U7 
       26.93       130.09        32.52         2.56        32.91        19.20 
TCGA-AR-A0TP TCGA-AR-A0TQ TCGA-AR-A0TR TCGA-AR-A0TS TCGA-AR-A0TW TCGA-AR-A0TX 
      111.32        73.64         5.26        74.79        98.93        64.83 
TCGA-AR-A0TZ TCGA-AR-A0U1 TCGA-AR-A0U2 TCGA-AR-A0U3 TCGA-AR-A0U4 TCGA-AR-A1AH 
      107.24       101.95        83.87       114.02        85.97        75.55 
TCGA-AR-A1AI TCGA-AR-A1AL TCGA-AR-A1AM TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AP 
       61.84        48.82        76.11        43.73        43.56        39.98 
TCGA-AR-A1AQ TCGA-AR-A1AR TCGA-AR-A1AS TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A1AW 
       43.07        17.23        37.81        76.21        61.28        63.62 
TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24N 
       62.14        33.73       160.90        94.22        96.89        78.51 
TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24Q TCGA-AR-A24R TCGA-AR-A24T TCGA-AR-A24V 
       84.20         2.76       104.28        87.22        76.01        85.35 
TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A24Z TCGA-AR-A251 TCGA-AR-A252 TCGA-AR-A256 
       50.96        83.77        79.00        78.48        73.18        93.83 
TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LL TCGA-AR-A2LM 
      143.21        20.25        62.86        54.21        66.15        52.11 
TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A2LR TCGA-AR-A5QM TCGA-AR-A5QN 
       38.17        39.39        40.54        20.38        54.74        16.04 
TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0I9 
       20.45        10.59        77.62       143.38       149.59        12.13 
TCGA-B6-A0IA TCGA-B6-A0IB TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IH 
      220.90       129.57        50.70        65.72       146.50       112.37 
TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IO TCGA-B6-A0IP 
      176.98        18.77       126.12        84.59       110.14       110.93 
TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RI TCGA-B6-A0RL TCGA-B6-A0RM 
      140.88       211.56        68.45       234.28        81.17        78.02 
TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RS TCGA-B6-A0RT 
      172.96       162.05       102.77       140.48       100.70        89.46 
TCGA-B6-A0RU TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0WW 
      131.21       157.41        97.48       188.68        79.63        18.35 
TCGA-B6-A0WX TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 
       21.47       129.57       129.70       186.48        28.27        68.94 
TCGA-B6-A0X7 TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A2IU TCGA-B6-A401 
       58.88        43.59       101.52        73.51       170.17        85.35 
TCGA-B6-A402 TCGA-B6-A408 TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AW TCGA-BH-A0AY 
       74.99        68.12       103.63        71.15        20.45        25.55 
TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B2 TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B5 
       28.50        46.95        40.83        39.55        39.16        48.36 
TCGA-BH-A0B6 TCGA-BH-A0B9 TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BF 
       56.94        51.68        37.22        32.02        18.21        25.71 
TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BP TCGA-BH-A0BQ 
       21.70        44.05        61.68        35.67        48.69        27.19 
TCGA-BH-A0BS TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C1 
       53.95        45.57        49.94        49.05        41.75        44.02 
TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH 
       48.13        42.90        45.83        31.17        23.44        38.01 
TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DO TCGA-BH-A0DP TCGA-BH-A0DQ 
       22.13        13.91        48.23        17.26        15.65         3.22 
TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E0 
        2.56        38.47        67.86        47.41        16.27         4.41 
TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E6 TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EA 
       15.68        14.30         9.63        44.81        46.19        32.58 
TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 
       24.43        30.35        10.78        15.16        37.78        35.51 
TCGA-BH-A0H6 TCGA-BH-A0H7 TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HI 
       24.56        23.08        41.00        52.96        26.50        20.38 
TCGA-BH-A0HK TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW 
        5.85         2.50        13.61        36.85        12.89        51.32 
TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A0WA 
       27.25        50.79        24.95        42.35        44.81        23.05 
TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18Q 
        2.01         7.23        72.56        37.74        30.28        55.63 
TCGA-BH-A18R TCGA-BH-A18S TCGA-BH-A18T TCGA-BH-A1EN TCGA-BH-A1EO TCGA-BH-A1ET 
       37.55        66.05         7.36        69.93        91.99        82.85 
TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1EX TCGA-BH-A1F0 TCGA-BH-A1F2 
       42.28        12.00        55.69        49.58        25.81        31.53 
TCGA-BH-A1F5 TCGA-BH-A1F6 TCGA-BH-A1FB TCGA-BH-A1FC TCGA-BH-A1FD TCGA-BH-A1FG 
       89.16        97.48       120.62       114.15        33.17       122.89 
TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FM TCGA-BH-A1FR TCGA-BH-A201 
       36.92        63.35        55.00        45.63       144.59        28.14 
TCGA-BH-A202 TCGA-BH-A204 TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A28Q 
       26.14        83.31        57.83       130.16        10.65         6.44 
TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5IZ TCGA-BH-A6R8 
       20.12        10.52       109.28         8.94        18.64         9.63 
TCGA-BH-A6R9 TCGA-BH-A8FY TCGA-BH-A8G0 TCGA-BH-AB28 TCGA-C8-A12L TCGA-C8-A12M 
        5.26         9.70        21.76         9.44        11.93        11.77 
TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12V TCGA-C8-A12X 
       11.77        12.66        11.77        12.66        12.66        12.66 
TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A137 TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HG 
        1.87         1.12         4.11        12.33        10.92        11.34 
TCGA-C8-A1HI TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A26V 
       11.28         0.16        12.03         2.30         3.25         0.30 
TCGA-C8-A26W TCGA-C8-A26X TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A274 
        0.23         0.36         0.43         8.28         9.67         9.53 
TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A3M8 
        0.03         9.50        12.20         0.99         0.03         0.23 
TCGA-C8-A8HP TCGA-C8-A8HR TCGA-C8-A9FZ TCGA-D8-A13Y TCGA-D8-A141 TCGA-D8-A142 
       13.02        13.41        19.46        11.90        20.58        13.97 
TCGA-D8-A143 TCGA-D8-A146 TCGA-D8-A147 TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JC 
       14.17        21.14        19.20        16.50        18.71        15.78 
TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JF TCGA-D8-A1JH TCGA-D8-A1JI TCGA-D8-A1JL 
       18.15        18.90        12.03        14.01        18.97        20.09 
TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X6 
       19.40        20.38        12.20        13.32        14.70        17.79 
TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC 
       16.73        25.74        23.90        27.58        18.15        12.39 
TCGA-D8-A1XD TCGA-D8-A1XF TCGA-D8-A1XG TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XM 
       17.16        15.22        14.73        21.83        14.50        17.69 
TCGA-D8-A1XO TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XT TCGA-D8-A1XV TCGA-D8-A1XW 
       15.55        15.85        16.31         6.35        15.16        12.66 
TCGA-D8-A1XY TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 TCGA-D8-A1Y3 
       16.54        15.32        15.52         9.93        14.24        14.14 
TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27I TCGA-D8-A27K 
       17.42        16.04        13.45        13.05        14.43         9.44 
TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27R TCGA-D8-A27T TCGA-D8-A27V 
       13.48         4.80         0.76        10.09        13.08        12.53 
TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A4Z1 TCGA-D8-A73W TCGA-D8-A73X TCGA-E2-A105 
       12.26        33.37        21.67         8.02        12.10        43.00 
TCGA-E2-A107 TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10C TCGA-E2-A10E 
       34.42        46.59        40.41        37.51        40.11        28.44 
TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14Q TCGA-E2-A14R 
       28.87        47.15        44.68        40.96        38.24        38.60 
TCGA-E2-A14S TCGA-E2-A14U TCGA-E2-A14W TCGA-E2-A14X TCGA-E2-A153 TCGA-E2-A154 
       33.17        43.33        32.02        31.96        23.24        19.43 
TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A158 TCGA-E2-A159 TCGA-E2-A15A TCGA-E2-A15C 
       21.04        23.87        14.79        25.05        23.34        22.82 
TCGA-E2-A15D TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15I TCGA-E2-A15K 
       17.29        20.71        21.63        18.21        17.42         9.04 
TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15O TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A15S 
       20.58        11.05        13.02        19.56        17.06        14.07 
TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B6 
       14.99        60.53        53.62        53.03        33.01        28.50 
TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IG TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IK 
       17.10        38.30        32.78        33.70        28.44        22.65 
TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L9 
        3.88        22.19        11.08        54.18        27.42        19.66 
TCGA-E2-A1LA TCGA-E2-A1LG TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A2P5 TCGA-E2-A2P6 
       24.59        18.87       102.61         8.75        16.93         5.52 
TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A573 TCGA-E2-A574 TCGA-E2-A576 
       15.72         8.28        30.61        34.92        26.56        34.29 
TCGA-E2-A9RU TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N6 TCGA-E9-A1NA 
       12.85        34.82        32.88        36.82        13.48        36.56 
TCGA-E9-A1NC TCGA-E9-A1NE TCGA-E9-A1NG TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 
       39.55        35.77        25.84        11.90        28.27        34.95 
TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R6 TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RC 
        2.56         6.12         2.76        32.09        32.09        40.24 
TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RI TCGA-E9-A227 TCGA-E9-A228 
        1.12        34.65         6.58        35.64        32.05        12.53 
TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22G TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A244 
       13.32        39.09        23.51        20.71        17.06         0.69 
TCGA-E9-A247 TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A2JT 
       27.22         7.13        24.56         0.72        29.72         0.76 
TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3QA TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A54Y 
       26.07        18.41        30.18        15.72        12.33        23.84 
TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UO TCGA-E9-A5UP TCGA-E9-A6HE TCGA-EW-A1IW 
       14.70         0.79        13.81        14.40        15.39        12.20 
TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1J3 
       39.72         8.48        18.21        18.90        13.25        16.57 
TCGA-EW-A1J5 TCGA-EW-A1J6 TCGA-EW-A1OX TCGA-EW-A1OY TCGA-EW-A1OZ TCGA-EW-A1P0 
       15.68        28.77        29.95        29.85        40.41        41.13 
TCGA-EW-A1P1 TCGA-EW-A1P3 TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A1P6 TCGA-EW-A1P7 
       39.78        52.96        29.82        23.11        18.48        30.08 
TCGA-EW-A1P8 TCGA-EW-A1PA TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A1PF 
        7.86        18.90        19.99         6.15        13.94        14.43 
TCGA-EW-A1PG TCGA-EW-A2FS TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A423 TCGA-GI-A2C8 
       34.55        52.73        22.09        34.03        10.16         7.40 
TCGA-GI-A2C9 TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DC TCGA-GM-A2DD 
      109.87        59.57       216.76        79.10        83.34        75.02 
TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM 
       70.85        72.10        85.15        86.96       115.69       106.06 
TCGA-GM-A2DN TCGA-GM-A2DO TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XN 
      101.62        85.35       110.50        38.20        43.73        66.38 
TCGA-GM-A4E0 TCGA-GM-A5PX TCGA-HN-A2NL TCGA-HN-A2OB TCGA-JL-A3YX TCGA-LD-A66U 
       72.03        18.12         2.60        62.43        11.57        21.24 
TCGA-LD-A74U TCGA-LD-A7W5 TCGA-LD-A7W6 TCGA-LD-A9QF TCGA-LL-A440 TCGA-LL-A441 
       13.22         7.10        13.28        10.62        24.95        11.44 
TCGA-LL-A442 TCGA-LL-A5YL TCGA-LL-A5YM TCGA-LL-A5YP TCGA-LL-A6FP TCGA-LL-A6FQ 
       10.95        17.06        15.32        14.79        22.26         2.63 
TCGA-LL-A6FR TCGA-LL-A73Y TCGA-LL-A740 TCGA-LL-A7SZ TCGA-LL-A7T0 TCGA-LL-A8F5 
       16.08        15.68        14.50        14.70        12.36        14.73 
TCGA-LL-A9Q3 TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5D7 
       14.07        27.91        22.39         2.10        36.30        58.52 
TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RU TCGA-OL-A5RV TCGA-OL-A5RW TCGA-OL-A5RX 
       31.99        58.62        40.08        34.92        36.36        28.87 
TCGA-OL-A5RY TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66K TCGA-OL-A66L 
       24.72        26.70        23.47        65.62        41.92        42.77 
TCGA-OL-A66N TCGA-OL-A66O TCGA-OL-A66P TCGA-OL-A6VO TCGA-OL-A6VQ TCGA-OL-A6VR 
       26.04        17.36        14.07        28.21        19.73        40.11 
TCGA-OL-A97C TCGA-PE-A5DC TCGA-PL-A8LX TCGA-PL-A8LY TCGA-PL-A8LZ TCGA-S3-A6ZF 
        8.91        47.01         0.16         0.26         9.93        16.50 
TCGA-S3-A6ZG TCGA-S3-A6ZH TCGA-S3-AA0Z TCGA-S3-AA10 TCGA-S3-AA11 TCGA-S3-AA12 
       13.12        16.93        16.80        15.39        13.84        15.35 
TCGA-S3-AA14 TCGA-S3-AA15 TCGA-S3-AA17 TCGA-W8-A86G TCGA-WT-AB41 TCGA-XX-A899 
       14.96        13.84        13.94        11.41        52.96        15.35 
TCGA-XX-A89A TCGA-Z7-A8R5 TCGA-Z7-A8R6 
       16.04       108.07       107.05 

  DEL PEAK 15(8P11.21) MUTATED DEL PEAK 15(8P11.21) WILD-TYPE 
                          0.16                           0.03 
  DEL PEAK 15(8P11.21) MUTATED DEL PEAK 15(8P11.21) WILD-TYPE 
                        189.01                         234.28 
  DEL PEAK 15(8P11.21) MUTATED DEL PEAK 15(8P11.21) WILD-TYPE 
                         22.75                          24.95 
[1] "0.2 - 189.0 (22.8)" "0.0 - 234.3 (24.9)"
[1] "hr=" "1.5"
D44V2, continuous
                                vv
clus                             STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  DEL PEAK 15(8P11.21) MUTATED        19       18        0        0        68
  DEL PEAK 15(8P11.21) WILD-TYPE      70       63        8        3       285
                                vv
clus                             STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  DEL PEAK 15(8P11.21) MUTATED          39         0         27          6
  DEL PEAK 15(8P11.21) WILD-TYPE       206         2        123         23
                                vv
clus                             STAGE IIIC STAGE IV STAGE TIS STAGE X
  DEL PEAK 15(8P11.21) MUTATED           11        7         0       2
  DEL PEAK 15(8P11.21) WILD-TYPE         52       13         1      11
D44V3, multiclass
            clus
vv           DEL PEAK 15(8P11.21) MUTATED DEL PEAK 15(8P11.21) WILD-TYPE
  STAGE I                              19                             70
  STAGE IA                             18                             63
  STAGE IB                              0                              8
  STAGE II                              0                              3
  STAGE IIA                            68                            285
  STAGE IIB                            39                            206
  STAGE III                             0                              2
  STAGE IIIA                           27                            123
  STAGE IIIB                            6                             23
  STAGE IIIC                           11                             52
  STAGE IV                              7                             13
  STAGE TIS                             0                              1
  STAGE X                               2                             11
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              T1  T2  T3  T4
  DEL PEAK 15(8P11.21) MUTATED    52 116  18  12
  DEL PEAK 15(8P11.21) WILD-TYPE 220 500 112  28
D44V4, multiclass
    clus
vv   DEL PEAK 15(8P11.21) MUTATED DEL PEAK 15(8P11.21) WILD-TYPE
  T1                           52                            220
  T2                          116                            500
  T3                           18                            112
  T4                           12                             28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              N0  N1  N2  N3
  DEL PEAK 15(8P11.21) MUTATED   100  54  26  16
  DEL PEAK 15(8P11.21) WILD-TYPE 401 296  91  59
D44V5, multiclass
    clus
vv   DEL PEAK 15(8P11.21) MUTATED DEL PEAK 15(8P11.21) WILD-TYPE
  N0                          100                            401
  N1                           54                            296
  N2                           26                             91
  N3                           16                             59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D44V6, binary
                                cls
clus                               0   1
  DEL PEAK 15(8P11.21) MUTATED   168   7
  DEL PEAK 15(8P11.21) WILD-TYPE 711  14
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 15(8P11.21) MUTATED    168    7
  DEL PEAK 15(8P11.21) WILD-TYPE  711   14
   clus
vv  DEL PEAK 15(8P11.21) MUTATED DEL PEAK 15(8P11.21) WILD-TYPE
  0                          168                            711
  1                            7                             14
[1] 2 2
[1] FALSE
D44V7, binary
                                cls
clus                               0   1
  DEL PEAK 15(8P11.21) MUTATED   198   0
  DEL PEAK 15(8P11.21) WILD-TYPE 853  11
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 15(8P11.21) MUTATED    198    0
  DEL PEAK 15(8P11.21) WILD-TYPE  853   11
        clus
vv       DEL PEAK 15(8P11.21) MUTATED DEL PEAK 15(8P11.21) WILD-TYPE
  FEMALE                          198                            853
  MALE                              0                             11
[1] 2 2
[1] FALSE
                                vv
clus                             INFILTRATING CARCINOMA NOS
  DEL PEAK 15(8P11.21) MUTATED                            0
  DEL PEAK 15(8P11.21) WILD-TYPE                          1
                                vv
clus                             INFILTRATING DUCTAL CARCINOMA
  DEL PEAK 15(8P11.21) MUTATED                             164
  DEL PEAK 15(8P11.21) WILD-TYPE                           599
                                vv
clus                             INFILTRATING LOBULAR CARCINOMA
  DEL PEAK 15(8P11.21) MUTATED                               20
  DEL PEAK 15(8P11.21) WILD-TYPE                            172
                                vv
clus                             MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  DEL PEAK 15(8P11.21) MUTATED                     0                     0
  DEL PEAK 15(8P11.21) WILD-TYPE                   6                     4
                                vv
clus                             MIXED HISTOLOGY (PLEASE SPECIFY)
  DEL PEAK 15(8P11.21) MUTATED                                  5
  DEL PEAK 15(8P11.21) WILD-TYPE                               25
                                vv
clus                             MUCINOUS CARCINOMA OTHER  SPECIFY
  DEL PEAK 15(8P11.21) MUTATED                    1              8
  DEL PEAK 15(8P11.21) WILD-TYPE                 16             40
D44V8, multiclass
                                  clus
vv                                 DEL PEAK 15(8P11.21) MUTATED
  INFILTRATING CARCINOMA NOS                                  0
  INFILTRATING DUCTAL CARCINOMA                             164
  INFILTRATING LOBULAR CARCINOMA                             20
  MEDULLARY CARCINOMA                                         0
  METAPLASTIC CARCINOMA                                       0
  MIXED HISTOLOGY (PLEASE SPECIFY)                            5
  MUCINOUS CARCINOMA                                          1
  OTHER  SPECIFY                                              8
                                  clus
vv                                 DEL PEAK 15(8P11.21) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                    1
  INFILTRATING DUCTAL CARCINOMA                               599
  INFILTRATING LOBULAR CARCINOMA                              172
  MEDULLARY CARCINOMA                                           6
  METAPLASTIC CARCINOMA                                         4
  MIXED HISTOLOGY (PLEASE SPECIFY)                             25
  MUCINOUS CARCINOMA                                           16
  OTHER  SPECIFY                                               40
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D44V9, binary
                                cls
clus                               0   1
  DEL PEAK 15(8P11.21) MUTATED    58 140
  DEL PEAK 15(8P11.21) WILD-TYPE 230 634
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 15(8P11.21) MUTATED     58  140
  DEL PEAK 15(8P11.21) WILD-TYPE  230  634
     clus
vv    DEL PEAK 15(8P11.21) MUTATED DEL PEAK 15(8P11.21) WILD-TYPE
  NO                            58                            230
  YES                          140                            634
[1] 2 2
[1] FALSE
D44V10, continuous
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 15(8P11.21) MUTATED                                  1    11
  DEL PEAK 15(8P11.21) WILD-TYPE                                0    49
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 15(8P11.21) MUTATED                          37   127
  DEL PEAK 15(8P11.21) WILD-TYPE                       133   609
D44V11, multiclass
                                  clus
vv                                 DEL PEAK 15(8P11.21) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            1
  ASIAN                                                      11
  BLACK OR AFRICAN AMERICAN                                  37
  WHITE                                                     127
                                  clus
vv                                 DEL PEAK 15(8P11.21) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              0
  ASIAN                                                        49
  BLACK OR AFRICAN AMERICAN                                   133
  WHITE                                                       609
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D44V12, binary
                                cls
clus                               0   1
  DEL PEAK 15(8P11.21) MUTATED     6 158
  DEL PEAK 15(8P11.21) WILD-TYPE  32 700
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 15(8P11.21) MUTATED      6  158
  DEL PEAK 15(8P11.21) WILD-TYPE   32  700
                        clus
vv                       DEL PEAK 15(8P11.21) MUTATED
  HISPANIC OR LATINO                                6
  NOT HISPANIC OR LATINO                          158
                        clus
vv                       DEL PEAK 15(8P11.21) WILD-TYPE
  HISPANIC OR LATINO                                 32
  NOT HISPANIC OR LATINO                            700
[1] 2 2
[1] FALSE

Clustering(45) Variable = DEL PEAK 16(9P23) MUTATION ANALYSIS
D45V1, survival
                             sevent
clus2                           0   1
  DEL PEAK 16(9P23) MUTATED   268  48
  DEL PEAK 16(9P23) WILD-TYPE 648  80
  DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE 
                        316                         728 
  DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE 
                         48                          80 
$`DEL PEAK 16(9P23) MUTATED`
TCGA-3C-AAAU TCGA-3C-AALI TCGA-A1-A0SD TCGA-A1-A0SJ TCGA-A1-A0SO TCGA-A2-A0CL 
      129.14       131.67        14.37        13.68        28.01        99.12 
TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0EO TCGA-A2-A0EQ TCGA-A2-A0ER TCGA-A2-A0ET 
       75.25         5.19        80.28        79.76        74.40        35.05 
TCGA-A2-A0EU TCGA-A2-A0EY TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0T0 
       34.29        63.29        54.64        27.12        44.88        17.52 
TCGA-A2-A0T7 TCGA-A2-A0YE TCGA-A2-A0YG TCGA-A2-A0YT TCGA-A2-A1FW TCGA-A2-A1FX 
       20.75        18.21        21.90        23.77        17.36        60.72 
TCGA-A2-A1G1 TCGA-A2-A25B TCGA-A2-A25E TCGA-A2-A3XV TCGA-A2-A3XX TCGA-A2-A3XY 
       19.20        42.44       105.34        32.75        47.31        34.98 
TCGA-A2-A3Y0 TCGA-A2-A4S1 TCGA-A2-A4S3 TCGA-A7-A0CJ TCGA-A7-A0D9 TCGA-A7-A0DC 
       38.37        26.96        21.90        30.61        37.45        29.79 
TCGA-A7-A13D TCGA-A7-A13F TCGA-A7-A26G TCGA-A7-A2KD TCGA-A7-A4SA TCGA-A7-A4SB 
       31.73        25.15        23.74        22.32        14.93        13.74 
TCGA-A7-A4SF TCGA-A8-A06O TCGA-A8-A06R TCGA-A8-A06U TCGA-A8-A06X TCGA-A8-A06Z 
       17.92        13.02        17.98        29.03        31.00         1.02 
TCGA-A8-A075 TCGA-A8-A079 TCGA-A8-A07G TCGA-A8-A07L TCGA-A8-A07W TCGA-A8-A08G 
       17.03         9.01        18.97        32.05         9.99        19.96 
TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08O TCGA-A8-A08P TCGA-A8-A08R 
       12.00        37.05         9.99        31.00        31.00         0.99 
TCGA-A8-A08S TCGA-A8-A097 TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09C TCGA-A8-A09E 
       33.01        12.00         9.99        12.00         1.02        49.05 
TCGA-A8-A09I TCGA-A8-A09M TCGA-A8-A09N TCGA-A8-A09Q TCGA-A8-A09R TCGA-A8-A09T 
       45.07        33.07         1.02        25.02         8.98        19.04 
TCGA-A8-A09W TCGA-A8-A0A2 TCGA-A8-A0A6 TCGA-A8-A0A7 TCGA-A8-A0A9 TCGA-A8-A0AB 
        0.99        19.04        21.04         0.99        27.02        17.03 
TCGA-AC-A2BM TCGA-AC-A2FO TCGA-AC-A2QH TCGA-AC-A2QI TCGA-AC-A62V TCGA-AC-A6IW 
       99.35        50.70        33.04         0.92        11.44        13.58 
TCGA-AC-A7VC TCGA-AC-A8OP TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A041 TCGA-AN-A049 
        0.03        20.19         0.33         0.33         0.23         0.62 
TCGA-AN-A04A TCGA-AN-A0AJ TCGA-AN-A0AK TCGA-AN-A0AL TCGA-AN-A0AM TCGA-AN-A0AT 
        2.96         9.96         7.36         6.51         0.16         0.33 
TCGA-AN-A0FJ TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FZ TCGA-AN-A0XN TCGA-AN-A0XO 
        7.96         0.33         0.36         0.33         0.33        12.33 
TCGA-AN-A0XS TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03L TCGA-AO-A03N TCGA-AO-A03O 
        0.33         5.33         5.59        80.28        66.77        81.63 
TCGA-AO-A03V TCGA-AO-A0J3 TCGA-AO-A0J5 TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JE 
       29.13        21.40        26.04        21.53        50.70        76.77 
TCGA-AO-A1KQ TCGA-AO-A1KS TCGA-AO-A1KT TCGA-AQ-A04L TCGA-AQ-A0Y5 TCGA-AQ-A1H2 
       61.87         0.53        17.79       130.09         5.65        15.62 
TCGA-AQ-A54O TCGA-AR-A0TQ TCGA-AR-A0TR TCGA-AR-A0TS TCGA-AR-A0TV TCGA-AR-A0TW 
       32.91        73.64         5.26        74.79        42.35        98.93 
TCGA-AR-A0TY TCGA-AR-A0TZ TCGA-AR-A0U2 TCGA-AR-A0U3 TCGA-AR-A1AH TCGA-AR-A1AI 
       55.86       107.24        83.87       114.02        75.55        61.84 
TCGA-AR-A1AP TCGA-AR-A1AW TCGA-AR-A24N TCGA-AR-A24R TCGA-AR-A24S TCGA-AR-A24V 
       39.98        63.62        78.51        87.22        97.84        85.35 
TCGA-AR-A24W TCGA-AR-A24Z TCGA-AR-A252 TCGA-AR-A255 TCGA-AR-A2LK TCGA-B6-A0I9 
       50.96        79.00        73.18        58.92        54.21        12.13 
TCGA-B6-A0IB TCGA-B6-A0IK TCGA-B6-A0IO TCGA-B6-A0RO TCGA-B6-A0RP TCGA-B6-A0WV 
      129.57        18.77       110.14       162.05       102.77        79.63 
TCGA-B6-A0WY TCGA-B6-A401 TCGA-B6-A408 TCGA-BH-A0AU TCGA-BH-A0AW TCGA-BH-A0AZ 
      113.79        85.35        68.12        24.53        20.45        28.50 
TCGA-BH-A0B3 TCGA-BH-A0B5 TCGA-BH-A0B7 TCGA-BH-A0BF TCGA-BH-A0BL TCGA-BH-A0BR 
       39.55        48.36        56.98        25.71        44.05        53.69 
TCGA-BH-A0BV TCGA-BH-A0BW TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DI TCGA-BH-A0DK 
       49.94        11.67        48.13        42.90        22.13        13.91 
TCGA-BH-A0DL TCGA-BH-A0DQ TCGA-BH-A0E2 TCGA-BH-A0E6 TCGA-BH-A0EB TCGA-BH-A0GY 
       48.23         3.22        14.30         9.63        24.49        30.35 
TCGA-BH-A0H7 TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0HY TCGA-BH-A0W3 TCGA-BH-A18K 
       23.08        41.00        52.96        50.79        23.93        90.84 
TCGA-BH-A18L TCGA-BH-A18S TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A1EN TCGA-BH-A1ES 
       26.66        66.05         7.36        51.39        69.93       113.82 
TCGA-BH-A1EY TCGA-BH-A1F2 TCGA-BH-A1F8 TCGA-BH-A1FM TCGA-BH-A1FU TCGA-BH-A203 
       17.69        31.53        24.66        45.63        72.07        38.60 
TCGA-BH-A208 TCGA-BH-A42T TCGA-BH-A8FZ TCGA-BH-AB28 TCGA-C8-A12O TCGA-C8-A12P 
       57.83        10.52        18.87         9.44        12.66        11.77 
TCGA-C8-A12Q TCGA-C8-A12U TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A130 TCGA-C8-A131 
       12.66        12.66        12.66        12.66         3.16         2.24 
TCGA-C8-A132 TCGA-C8-A137 TCGA-C8-A1HG TCGA-C8-A1HK TCGA-C8-A1HL TCGA-C8-A1HM 
        1.87         4.11        11.34        12.03        10.42         2.30 
TCGA-C8-A26V TCGA-C8-A26Y TCGA-C8-A273 TCGA-C8-A27A TCGA-C8-A8HP TCGA-C8-A8HR 
        0.30         0.43         9.67        12.20        13.02        13.41 
TCGA-D8-A13Y TCGA-D8-A13Z TCGA-D8-A143 TCGA-D8-A145 TCGA-D8-A1J9 TCGA-D8-A1JA 
       11.90        20.88        14.17        13.48        17.49        16.50 
TCGA-D8-A1JC TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JM 
       15.78        12.03        12.03        20.09        20.12        19.40 
TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XS TCGA-D8-A1XU 
       18.58        17.79        23.90        27.58        16.31        12.99 
TCGA-D8-A1XY TCGA-D8-A1Y3 TCGA-D8-A27F TCGA-D8-A27N TCGA-D8-A27R TCGA-D8-A27W 
       16.54        14.14        16.04         4.80        10.09        12.26 
TCGA-E2-A109 TCGA-E2-A14O TCGA-E2-A14T TCGA-E2-A14W TCGA-E2-A14Z TCGA-E2-A152 
       46.59        44.68        33.30        32.02        18.51        27.12 
TCGA-E2-A15A TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15H TCGA-E2-A15S TCGA-E2-A1IO 
       23.34        20.71        21.63        12.92        14.07        20.98 
TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LH 
       54.18        27.42        24.59        40.47        28.90       106.75 
TCGA-E2-A1LK TCGA-E2-A1LL TCGA-E2-A56Z TCGA-E2-A573 TCGA-E9-A1N9 TCGA-E9-A1NA 
        8.75        43.04         8.28        34.92        13.12        36.56 
TCGA-E9-A1NF TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R2 TCGA-E9-A1R4 TCGA-E9-A1R6 
       35.24         9.86        11.90        34.95         6.12         2.76 
TCGA-E9-A1R7 TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RG 
       21.21        32.09        40.24        34.65         6.58        21.27 
TCGA-E9-A1RH TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A22E TCGA-E9-A247 TCGA-E9-A2JS 
       34.59        39.09        22.75        12.89        27.22        29.72 
TCGA-E9-A54X TCGA-E9-A5FL TCGA-E9-A5UO TCGA-E9-A5UP TCGA-EW-A1J6 TCGA-EW-A1OV 
       12.33         0.79        13.81        14.40        28.77        25.94 
TCGA-EW-A1OY TCGA-EW-A1OZ TCGA-EW-A1P3 TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A1PA 
       29.85        40.41        52.96        29.82        23.11        18.90 
TCGA-EW-A1PD TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A423 TCGA-EW-A424 
       13.94        55.00        52.73        25.91        10.16        23.51 
TCGA-GM-A2DB TCGA-HN-A2NL TCGA-JL-A3YX TCGA-LD-A7W5 TCGA-LL-A441 TCGA-LL-A6FQ 
       79.10         2.60        11.57         7.10        11.44         2.63 
TCGA-LL-A7SZ TCGA-LL-A7T0 TCGA-MS-A51U TCGA-OL-A5D6 TCGA-OL-A5RZ TCGA-OL-A66N 
       14.70        12.36        22.39        36.30        22.32        26.04 
TCGA-OL-A66P TCGA-PE-A5DC TCGA-S3-A6ZH TCGA-S3-AA17 
       14.07        47.01        16.93        13.94 

$`DEL PEAK 16(9P23) WILD-TYPE`
TCGA-3C-AALJ TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT0 TCGA-5L-AAT1 TCGA-5T-A9QA 
       42.81        40.14        11.44        48.56        48.36         9.96 
TCGA-A1-A0SB TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI 
        8.52        43.43        48.10        14.27        47.24        20.88 
TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SP TCGA-A1-A0SQ TCGA-A2-A04N 
       31.79         7.96        39.32        19.20        18.21       104.81 
TCGA-A2-A04P TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04V 
       18.02        78.41       121.94        73.84        87.25        63.12 
TCGA-A2-A04W TCGA-A2-A04X TCGA-A2-A04Y TCGA-A2-A0CK TCGA-A2-A0CM TCGA-A2-A0CO 
      101.98        55.43        36.13       136.73        24.79       114.81 
TCGA-A2-A0CP TCGA-A2-A0CQ TCGA-A2-A0CR TCGA-A2-A0CS TCGA-A2-A0CV TCGA-A2-A0CW 
       92.48        88.60       107.93        75.55        98.99       107.93 
TCGA-A2-A0CX TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0D4 
       56.81        67.33        34.55        33.76        61.58        25.22 
TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EP TCGA-A2-A0ES TCGA-A2-A0EV TCGA-A2-A0EW 
      101.72       134.40       107.61        72.00        31.82        61.94 
TCGA-A2-A0EX TCGA-A2-A0ST TCGA-A2-A0SX TCGA-A2-A0SY TCGA-A2-A0T1 TCGA-A2-A0T2 
       24.72        99.19        50.43        44.28        17.13         8.38 
TCGA-A2-A0T3 TCGA-A2-A0T4 TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0YC TCGA-A2-A0YD 
       49.84        20.52        17.46        18.90        32.55        25.28 
TCGA-A2-A0YF TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A0YK TCGA-A2-A0YL 
       50.47        21.67        49.48        18.61        19.33        48.46 
TCGA-A2-A0YM TCGA-A2-A1FV TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G4 TCGA-A2-A1G6 
       31.73        23.47        22.45        20.25        19.56        16.47 
TCGA-A2-A259 TCGA-A2-A25A TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25F TCGA-A2-A3KC 
       52.47       107.70        17.19        18.15        10.59        20.88 
TCGA-A2-A3KD TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XU TCGA-A2-A3XW TCGA-A2-A3XZ 
       39.65        33.93        83.01        29.98        49.48        50.37 
TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S2 TCGA-A7-A0CD 
        7.30        24.39        21.30        23.21        21.14        38.30 
TCGA-A7-A0CE TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A13E 
       35.31        34.29        35.47        35.67        33.11        20.19 
TCGA-A7-A13G TCGA-A7-A13H TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26H TCGA-A7-A26I 
       23.61        29.56        31.36        24.26        23.80        21.73 
TCGA-A7-A26J TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3J1 TCGA-A7-A3RF 
       20.61        11.34        10.59        10.29        11.28        13.41 
TCGA-A7-A425 TCGA-A7-A426 TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A56D TCGA-A7-A5ZV 
       14.70        11.97        14.50        21.17        14.73        12.10 
TCGA-A7-A5ZW TCGA-A7-A5ZX TCGA-A7-A6VV TCGA-A7-A6VW TCGA-A7-A6VX TCGA-A7-A6VY 
       10.72        11.05        10.29         9.37        10.42         8.75 
TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06T TCGA-A8-A06Y TCGA-A8-A076 TCGA-A8-A07B 
       13.02         1.02        53.06        26.01        53.98        43.00 
TCGA-A8-A07E TCGA-A8-A07F TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07O TCGA-A8-A07P 
       19.99        18.97        14.01        12.00         9.99        10.98 
TCGA-A8-A07R TCGA-A8-A07S TCGA-A8-A07U TCGA-A8-A07Z TCGA-A8-A082 TCGA-A8-A084 
        8.98         7.99        24.99        45.07        18.05        15.06 
TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08B TCGA-A8-A08C TCGA-A8-A08F 
       36.95        13.02         0.99        38.01        28.96        33.01 
TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A08Z TCGA-A8-A091 TCGA-A8-A092 TCGA-A8-A093 
      112.08        43.00        40.01        33.01        30.97        17.95 
TCGA-A8-A095 TCGA-A8-A099 TCGA-A8-A09D TCGA-A8-A09K TCGA-A8-A09V TCGA-A8-A09X 
       41.98         9.99        50.04        29.98        15.02        14.01 
TCGA-A8-A0A1 TCGA-A8-A0A4 TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23E TCGA-AC-A23G 
       12.00        13.02        38.04         0.95         2.37        10.85 
TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2FB TCGA-AC-A2FF TCGA-AC-A2FG 
        5.72         1.48        38.53        40.57        55.43        36.99 
TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3HN TCGA-AC-A3OD 
       38.79        26.04         2.27        32.45        16.31        14.83 
TCGA-AC-A3QP TCGA-AC-A3TN TCGA-AC-A3W5 TCGA-AC-A3W6 TCGA-AC-A3YI TCGA-AC-A3YJ 
       22.19        14.99        16.57        19.79        23.24        24.79 
TCGA-AC-A5XS TCGA-AC-A62X TCGA-AC-A62Y TCGA-AC-A6IV TCGA-AC-A6IX TCGA-AC-A6NO 
        1.55        13.71        17.42        18.67        12.26         1.68 
TCGA-AC-A7VB TCGA-AC-A8OQ TCGA-AC-A8OR TCGA-AC-A8OS TCGA-AN-A046 TCGA-AN-A04C 
        8.22         1.12         1.32         2.30         0.33         1.78 
TCGA-AN-A04D TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FK 
        1.71         0.33         0.33         6.44         5.65         7.00 
TCGA-AN-A0FL TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FX TCGA-AN-A0FY 
        7.59         7.17         6.28         7.04         0.33         0.33 
TCGA-AN-A0XL TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AO-A03M 
        0.33         0.30         0.33         0.33         0.33        61.35 
TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A0J2 TCGA-AO-A0J4 
       95.70        68.75        47.87        58.95        32.78        52.18 
TCGA-AO-A0J6 TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JC TCGA-AO-A0JD 
       37.48        20.32        22.36        53.03        50.86        72.00 
TCGA-AO-A0JF TCGA-AO-A0JG TCGA-AO-A0JI TCGA-AO-A0JJ TCGA-AO-A0JL TCGA-AO-A0JM 
       21.37        26.24        50.24        62.04        55.33        71.80 
TCGA-AO-A124 TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 TCGA-AO-A129 TCGA-AO-A12A 
      102.58        99.25       108.72       106.78       108.03        90.58 
TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A12E TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A12H 
       98.27        64.04        57.30        48.36        41.62        28.37 
TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KR TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A1H3 
       14.73        82.62        70.39        24.79        26.93        32.52 
TCGA-AQ-A54N TCGA-AQ-A7U7 TCGA-AR-A0TP TCGA-AR-A0TT TCGA-AR-A0TX TCGA-AR-A0U0 
        2.56        19.20       111.32        86.66        64.83        65.36 
TCGA-AR-A0U1 TCGA-AR-A0U4 TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AM 
      101.95        85.97        52.77        51.25        48.82        76.11 
TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AQ TCGA-AR-A1AR TCGA-AR-A1AS TCGA-AR-A1AU 
       43.73        43.56        43.07        17.23        37.81        76.21 
TCGA-AR-A1AV TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24K TCGA-AR-A24L 
       61.28        62.14        33.73       160.90        50.89        94.22 
TCGA-AR-A24M TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24Q TCGA-AR-A24T TCGA-AR-A24U 
       96.89        84.20         2.76       104.28        76.01        53.36 
TCGA-AR-A24X TCGA-AR-A250 TCGA-AR-A251 TCGA-AR-A254 TCGA-AR-A256 TCGA-AR-A2LE 
       83.77        89.00        78.48        72.76        93.83       143.21 
TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LL TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO 
       20.25        62.86        66.15        52.11        38.17        39.39 
TCGA-AR-A2LQ TCGA-AR-A2LR TCGA-AR-A5QM TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ 
       40.54        20.38        54.74        16.04        20.45        10.59 
TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0IA TCGA-B6-A0IC TCGA-B6-A0IE 
       77.62       143.38       149.59       220.90        50.70        65.72 
TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IP 
      146.50       112.37       176.98       126.12        84.59       110.93 
TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RL 
      140.88       211.56        68.45       189.01       234.28        81.17 
TCGA-B6-A0RM TCGA-B6-A0RN TCGA-B6-A0RQ TCGA-B6-A0RS TCGA-B6-A0RT TCGA-B6-A0RU 
       78.02       172.96       140.48       100.70        89.46       131.21 
TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WZ 
      157.41        97.48       188.68        18.35        21.47       129.57 
TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KC 
      129.70       186.48        28.27        68.94        58.88        43.59 
TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A402 TCGA-B6-A40B 
      101.52        73.51       139.17       170.17        74.99       103.63 
TCGA-B6-A40C TCGA-BH-A0AV TCGA-BH-A0AY TCGA-BH-A0B0 TCGA-BH-A0B2 TCGA-BH-A0B4 
       71.15        59.84        25.55        46.95        40.83        39.16 
TCGA-BH-A0B6 TCGA-BH-A0B9 TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BG 
       56.94        51.68        37.22        32.02        18.21        24.85 
TCGA-BH-A0BJ TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BP TCGA-BH-A0BQ TCGA-BH-A0BS 
       21.70        61.68        35.67        48.69        27.19        53.95 
TCGA-BH-A0BT TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0DD TCGA-BH-A0DE 
       45.57        49.05        41.75        44.02        45.83        31.17 
TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DO TCGA-BH-A0DP TCGA-BH-A0DS TCGA-BH-A0DT 
       23.44        38.01        17.26        15.65         2.56        38.47 
TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E7 
       67.86        47.41        16.27         4.41        15.68        44.81 
TCGA-BH-A0E9 TCGA-BH-A0EA TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0GZ TCGA-BH-A0H0 
       46.19        32.58        31.00        24.43        10.78        15.16 
TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0HB TCGA-BH-A0HI TCGA-BH-A0HK 
       37.78        35.51        24.56        26.50        20.38         5.85 
TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HX 
        2.50        13.61        36.85        12.89        51.32        27.25 
TCGA-BH-A0RX TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A0WA TCGA-BH-A18F 
        5.59        24.95        42.35        44.81        23.05         8.81 
TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P 
        2.01         7.23        20.12        72.56        37.74        30.28 
TCGA-BH-A18Q TCGA-BH-A18R TCGA-BH-A18V TCGA-BH-A1EO TCGA-BH-A1ET TCGA-BH-A1EU 
       55.63        37.55        51.16        91.99        82.85        42.28 
TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1EX TCGA-BH-A1F0 TCGA-BH-A1F5 TCGA-BH-A1F6 
       12.00        55.69        49.58        25.81        89.16        97.48 
TCGA-BH-A1FB TCGA-BH-A1FC TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH 
      120.62       114.15        33.17        74.73       122.89        36.92 
TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FN TCGA-BH-A1FR TCGA-BH-A201 TCGA-BH-A202 
       63.35        55.00        72.07       144.59        28.14        26.14 
TCGA-BH-A204 TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42U 
       83.31       130.16        10.65         6.44        20.12       109.28 
TCGA-BH-A42V TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-BH-A6R8 TCGA-BH-A6R9 TCGA-BH-A8FY 
        8.94        18.64        23.51         9.63         5.26         9.70 
TCGA-BH-A8G0 TCGA-C8-A12L TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12V TCGA-C8-A12Z 
       21.76        11.93        11.77        11.77        12.66         0.39 
TCGA-C8-A134 TCGA-C8-A135 TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HI 
        1.12         1.05         4.08        12.33        10.92        11.28 
TCGA-C8-A1HJ TCGA-C8-A1HN TCGA-C8-A26W TCGA-C8-A26X TCGA-C8-A26Z TCGA-C8-A274 
        0.16         3.25         0.23         0.36         8.28         9.53 
TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-C8-A8HQ 
        0.03         9.50         0.99         0.03         0.23        12.49 
TCGA-C8-A9FZ TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A146 TCGA-D8-A147 
       19.46        13.25        20.58        13.97        21.14        19.20 
TCGA-D8-A1J8 TCGA-D8-A1JB TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JH TCGA-D8-A1JI 
       14.17        18.71        18.15        18.90        14.01        18.97 
TCGA-D8-A1JL TCGA-D8-A1JN TCGA-D8-A1JP TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU 
       20.09        20.38        21.01        12.20        13.32        14.70 
TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XD TCGA-D8-A1XF 
       16.73        25.74        18.15        12.39        17.16        15.22 
TCGA-D8-A1XG TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO 
       14.73        21.83        14.50        19.92        17.69        15.55 
TCGA-D8-A1XQ TCGA-D8-A1XR TCGA-D8-A1XT TCGA-D8-A1XV TCGA-D8-A1XW TCGA-D8-A1XZ 
       16.41        15.85         6.35        15.16        12.66        15.32 
TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 TCGA-D8-A27E TCGA-D8-A27G TCGA-D8-A27H 
       15.52         9.93        14.24        17.42        13.45        13.05 
TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27P TCGA-D8-A27T 
       14.43         9.44        16.41        13.48         0.76        13.08 
TCGA-D8-A27V TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-D8-A73U TCGA-D8-A73W 
       12.53        33.37        18.51        21.67        16.18         8.02 
TCGA-D8-A73X TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A10A TCGA-E2-A10B 
       12.10        43.00        34.42        27.52        40.41        37.51 
TCGA-E2-A10C TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14P TCGA-E2-A14Q 
       40.11        28.44        28.87        47.15        40.96        38.24 
TCGA-E2-A14R TCGA-E2-A14S TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14X TCGA-E2-A14Y 
       38.60        33.17        43.33        34.26        31.96        28.60 
TCGA-E2-A150 TCGA-E2-A153 TCGA-E2-A154 TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A158 
       25.41        23.24        19.43        21.04        23.87        14.79 
TCGA-E2-A159 TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15G TCGA-E2-A15I TCGA-E2-A15J 
       25.05        22.82        17.29        18.21        17.42        19.40 
TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15O TCGA-E2-A15P TCGA-E2-A15R 
        9.04        20.58        11.05        13.02        19.56        17.06 
TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 
       14.99        60.53        53.62        53.03        33.01        32.35 
TCGA-E2-A1B6 TCGA-E2-A1BC TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IG 
       28.50        16.47        17.10        38.30        37.41        32.78 
TCGA-E2-A1IH TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN 
       33.73        33.70        28.44        22.65         3.88        22.19 
TCGA-E2-A1IU TCGA-E2-A1L8 TCGA-E2-A1L9 TCGA-E2-A1LG TCGA-E2-A1LI TCGA-E2-A2P5 
       11.08        39.62        19.66        18.87       102.61        16.93 
TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A570 TCGA-E2-A574 TCGA-E2-A576 TCGA-E2-A9RU 
        5.52        15.72        30.61        26.56        34.29        12.85 
TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N6 TCGA-E9-A1N8 TCGA-E9-A1NC 
       34.82        32.88        36.82        13.48        12.00        39.55 
TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NG TCGA-E9-A1R0 TCGA-E9-A1R3 TCGA-E9-A1R5 
       12.59        35.77        25.84        28.27         2.56         3.02 
TCGA-E9-A1RA TCGA-E9-A1RD TCGA-E9-A1RI TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A228 
       32.09         1.12        35.64        34.13        32.05        12.53 
TCGA-E9-A229 TCGA-E9-A22D TCGA-E9-A22G TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A244 
       13.32        41.03        23.51        20.71        17.06         0.69 
TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A295 TCGA-E9-A2JT TCGA-E9-A3HO 
        1.94         7.13        24.56         0.72         0.76        26.07 
TCGA-E9-A3Q9 TCGA-E9-A3QA TCGA-E9-A3X8 TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A6HE 
       18.41        30.18        15.72        23.84        14.70        15.39 
TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 
       12.20        39.72         8.48        18.21        18.90        13.25 
TCGA-EW-A1J3 TCGA-EW-A1J5 TCGA-EW-A1OW TCGA-EW-A1OX TCGA-EW-A1P0 TCGA-EW-A1P1 
       16.57        15.68        22.82        29.95        41.13        39.78 
TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1P8 TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A1PE 
       18.48        30.08         7.86        19.99         6.15        10.52 
TCGA-EW-A1PF TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A3U0 
       14.43        34.55        19.96        22.09        34.03        17.49 
TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DC TCGA-GM-A2DD 
        7.40       109.87        59.57       216.76        83.34        75.02 
TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM 
       70.85        72.10        85.15        86.96       115.69       106.06 
TCGA-GM-A2DN TCGA-GM-A2DO TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XL 
      101.62        85.35       110.50        38.20        43.73        69.30 
TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2OB TCGA-JL-A3YW 
       66.38        72.03        13.55        18.12        62.43        11.84 
TCGA-LD-A66U TCGA-LD-A74U TCGA-LD-A7W6 TCGA-LD-A9QF TCGA-LL-A440 TCGA-LL-A442 
       21.24        13.22        13.28        10.62        24.95        10.95 
TCGA-LL-A50Y TCGA-LL-A5YL TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LL-A5YP 
       25.05        17.06        15.32        14.70        14.47        14.79 
TCGA-LL-A6FP TCGA-LL-A6FR TCGA-LL-A73Y TCGA-LL-A73Z TCGA-LL-A740 TCGA-LL-A8F5 
       22.26        16.08        15.68         7.46        14.50        14.73 
TCGA-LL-A9Q3 TCGA-LQ-A4E4 TCGA-OK-A5Q2 TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5DA 
       14.07        27.91         2.10        58.52        31.99        58.62 
TCGA-OL-A5RU TCGA-OL-A5RV TCGA-OL-A5RW TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5S0 
       40.08        34.92        36.36        28.87        24.72        20.38 
TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66K TCGA-OL-A66L TCGA-OL-A66O 
       26.70        23.47        65.62        41.92        42.77        17.36 
TCGA-OL-A6VO TCGA-OL-A6VQ TCGA-OL-A6VR TCGA-OL-A97C TCGA-PE-A5DD TCGA-PE-A5DE 
       28.21        19.73        40.11         8.91        64.21        86.96 
TCGA-PL-A8LX TCGA-PL-A8LY TCGA-PL-A8LZ TCGA-S3-A6ZF TCGA-S3-A6ZG TCGA-S3-AA0Z 
        0.16         0.26         9.93        16.50        13.12        16.80 
TCGA-S3-AA10 TCGA-S3-AA11 TCGA-S3-AA12 TCGA-S3-AA14 TCGA-S3-AA15 TCGA-UL-AAZ6 
       15.39        13.84        15.35        14.96        13.84        17.03 
TCGA-UU-A93S TCGA-W8-A86G TCGA-WT-AB41 TCGA-WT-AB44 TCGA-XX-A899 TCGA-XX-A89A 
        3.81        11.41        52.96        29.03        15.35        16.04 
TCGA-Z7-A8R5 TCGA-Z7-A8R6 
      108.07       107.05 

  DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE 
                       0.03                        0.03 
  DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE 
                     162.05                      234.28 
  DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE 
                     22.320                      25.135 
[1] "0.0 - 162.1 (22.3)" "0.0 - 234.3 (25.1)"
[1] "hr=" "1.9"
D45V2, continuous
                             vv
clus                          STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  DEL PEAK 16(9P23) MUTATED        21       19        1        0        98
  DEL PEAK 16(9P23) WILD-TYPE      68       62        7        3       255
                             vv
clus                          STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  DEL PEAK 16(9P23) MUTATED          68         1         62         16
  DEL PEAK 16(9P23) WILD-TYPE       177         1         88         13
                             vv
clus                          STAGE IIIC STAGE IV STAGE TIS STAGE X
  DEL PEAK 16(9P23) MUTATED           19       10         0       4
  DEL PEAK 16(9P23) WILD-TYPE         44       10         1       9
D45V3, multiclass
            clus
vv           DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE
  STAGE I                           21                          68
  STAGE IA                          19                          62
  STAGE IB                           1                           7
  STAGE II                           0                           3
  STAGE IIA                         98                         255
  STAGE IIB                         68                         177
  STAGE III                          1                           1
  STAGE IIIA                        62                          88
  STAGE IIIB                        16                          13
  STAGE IIIC                        19                          44
  STAGE IV                          10                          10
  STAGE TIS                          0                           1
  STAGE X                            4                           9
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                           T1  T2  T3  T4
  DEL PEAK 16(9P23) MUTATED    60 204  37  19
  DEL PEAK 16(9P23) WILD-TYPE 212 412  93  21
D45V4, multiclass
    clus
vv   DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE
  T1                        60                         212
  T2                       204                         412
  T3                        37                          93
  T4                        19                          21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                           N0  N1  N2  N3
  DEL PEAK 16(9P23) MUTATED   135 101  55  24
  DEL PEAK 16(9P23) WILD-TYPE 366 249  62  51
D45V5, multiclass
    clus
vv   DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE
  N0                       135                         366
  N1                       101                         249
  N2                        55                          62
  N3                        24                          51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D45V6, binary
                             cls
clus                            0   1
  DEL PEAK 16(9P23) MUTATED   272  11
  DEL PEAK 16(9P23) WILD-TYPE 607  10
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 16(9P23) MUTATED    272   11
  DEL PEAK 16(9P23) WILD-TYPE  607   10
   clus
vv  DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE
  0                       272                         607
  1                        11                          10
[1] 2 2
[1] FALSE
D45V7, binary
                             cls
clus                            0   1
  DEL PEAK 16(9P23) MUTATED   315   6
  DEL PEAK 16(9P23) WILD-TYPE 736   5
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 16(9P23) MUTATED    315    6
  DEL PEAK 16(9P23) WILD-TYPE  736    5
        clus
vv       DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE
  FEMALE                       315                         736
  MALE                           6                           5
[1] 2 2
[1] FALSE
                             vv
clus                          INFILTRATING CARCINOMA NOS
  DEL PEAK 16(9P23) MUTATED                            0
  DEL PEAK 16(9P23) WILD-TYPE                          1
                             vv
clus                          INFILTRATING DUCTAL CARCINOMA
  DEL PEAK 16(9P23) MUTATED                             265
  DEL PEAK 16(9P23) WILD-TYPE                           498
                             vv
clus                          INFILTRATING LOBULAR CARCINOMA
  DEL PEAK 16(9P23) MUTATED                               25
  DEL PEAK 16(9P23) WILD-TYPE                            167
                             vv
clus                          MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  DEL PEAK 16(9P23) MUTATED                     3                     3
  DEL PEAK 16(9P23) WILD-TYPE                   3                     1
                             vv
clus                          MIXED HISTOLOGY (PLEASE SPECIFY)
  DEL PEAK 16(9P23) MUTATED                                  9
  DEL PEAK 16(9P23) WILD-TYPE                               21
                             vv
clus                          MUCINOUS CARCINOMA OTHER  SPECIFY
  DEL PEAK 16(9P23) MUTATED                    5             11
  DEL PEAK 16(9P23) WILD-TYPE                 12             37
D45V8, multiclass
                                  clus
vv                                 DEL PEAK 16(9P23) MUTATED
  INFILTRATING CARCINOMA NOS                               0
  INFILTRATING DUCTAL CARCINOMA                          265
  INFILTRATING LOBULAR CARCINOMA                          25
  MEDULLARY CARCINOMA                                      3
  METAPLASTIC CARCINOMA                                    3
  MIXED HISTOLOGY (PLEASE SPECIFY)                         9
  MUCINOUS CARCINOMA                                       5
  OTHER  SPECIFY                                          11
                                  clus
vv                                 DEL PEAK 16(9P23) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                 1
  INFILTRATING DUCTAL CARCINOMA                            498
  INFILTRATING LOBULAR CARCINOMA                           167
  MEDULLARY CARCINOMA                                        3
  METAPLASTIC CARCINOMA                                      1
  MIXED HISTOLOGY (PLEASE SPECIFY)                          21
  MUCINOUS CARCINOMA                                        12
  OTHER  SPECIFY                                            37
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D45V9, binary
                             cls
clus                            0   1
  DEL PEAK 16(9P23) MUTATED    91 230
  DEL PEAK 16(9P23) WILD-TYPE 197 544
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 16(9P23) MUTATED     91  230
  DEL PEAK 16(9P23) WILD-TYPE  197  544
     clus
vv    DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE
  NO                         91                         197
  YES                       230                         544
[1] 2 2
[1] FALSE
D45V10, continuous
                             vv
clus                          AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 16(9P23) MUTATED                                  0    23
  DEL PEAK 16(9P23) WILD-TYPE                                1    37
                             vv
clus                          BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 16(9P23) MUTATED                          47   210
  DEL PEAK 16(9P23) WILD-TYPE                       123   526
D45V11, multiclass
                                  clus
vv                                 DEL PEAK 16(9P23) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                         0
  ASIAN                                                   23
  BLACK OR AFRICAN AMERICAN                               47
  WHITE                                                  210
                                  clus
vv                                 DEL PEAK 16(9P23) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                           1
  ASIAN                                                     37
  BLACK OR AFRICAN AMERICAN                                123
  WHITE                                                    526
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D45V12, binary
                             cls
clus                            0   1
  DEL PEAK 16(9P23) MUTATED    10 255
  DEL PEAK 16(9P23) WILD-TYPE  28 603
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 16(9P23) MUTATED     10  255
  DEL PEAK 16(9P23) WILD-TYPE   28  603
                        clus
vv                       DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE
  HISPANIC OR LATINO                            10                          28
  NOT HISPANIC OR LATINO                       255                         603
[1] 2 2
[1] FALSE

Clustering(46) Variable = DEL PEAK 17(9P21.3) MUTATION ANALYSIS
D46V1, survival
                               sevent
clus2                             0   1
  DEL PEAK 17(9P21.3) MUTATED   307  47
  DEL PEAK 17(9P21.3) WILD-TYPE 609  81
  DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE 
                          354                           690 
  DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE 
                           47                            81 
$`DEL PEAK 17(9P21.3) MUTATED`
TCGA-3C-AAAU TCGA-3C-AALI TCGA-A1-A0SF TCGA-A1-A0SJ TCGA-A1-A0SO TCGA-A2-A04P 
      129.14       131.67        48.10        13.68        28.01        18.02 
TCGA-A2-A04Q TCGA-A2-A04T TCGA-A2-A0CT TCGA-A2-A0D0 TCGA-A2-A0EO TCGA-A2-A0EQ 
       78.41        73.84        75.25        67.33        80.28        79.76 
TCGA-A2-A0ER TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0T0 
       74.40        35.05        34.29        27.12        44.88        17.52 
TCGA-A2-A0YE TCGA-A2-A0YF TCGA-A2-A0YG TCGA-A2-A0YT TCGA-A2-A1FW TCGA-A2-A1FX 
       18.21        50.47        21.90        23.77        17.36        60.72 
TCGA-A2-A1G1 TCGA-A2-A25B TCGA-A2-A25E TCGA-A2-A3XV TCGA-A2-A3XX TCGA-A2-A3XY 
       19.20        42.44       105.34        32.75        47.31        34.98 
TCGA-A2-A3Y0 TCGA-A2-A4S1 TCGA-A2-A4S3 TCGA-A7-A0CJ TCGA-A7-A0D9 TCGA-A7-A0DA 
       38.37        26.96        21.90        30.61        37.45        35.67 
TCGA-A7-A0DC TCGA-A7-A13D TCGA-A7-A13F TCGA-A7-A26G TCGA-A7-A2KD TCGA-A7-A4SA 
       29.79        31.73        25.15        23.74        22.32        14.93 
TCGA-A7-A4SB TCGA-A7-A4SF TCGA-A7-A5ZV TCGA-A7-A6VY TCGA-A8-A06O TCGA-A8-A06Q 
       13.74        17.92        12.10         8.75        13.02         1.02 
TCGA-A8-A06R TCGA-A8-A06U TCGA-A8-A06X TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A075 
       17.98        29.03        31.00        26.01         1.02        17.03 
TCGA-A8-A076 TCGA-A8-A079 TCGA-A8-A07G TCGA-A8-A07L TCGA-A8-A07W TCGA-A8-A08F 
       53.98         9.01        18.97        32.05         9.99        33.01 
TCGA-A8-A08G TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08O TCGA-A8-A08P TCGA-A8-A08R 
       19.96        12.00        37.05        31.00        31.00         0.99 
TCGA-A8-A08S TCGA-A8-A08Z TCGA-A8-A097 TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09B 
       33.01        40.01        12.00         9.99         9.99        12.00 
TCGA-A8-A09C TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09M TCGA-A8-A09N TCGA-A8-A09Q 
        1.02        49.05        45.07        33.07         1.02        25.02 
TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09W TCGA-A8-A0A2 TCGA-A8-A0A6 TCGA-A8-A0A7 
        8.98        19.04         0.99        19.04        21.04         0.99 
TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-AC-A2BM TCGA-AC-A2FF TCGA-AC-A2QH TCGA-AC-A2QI 
       27.02        17.03        99.35        55.43        33.04         0.92 
TCGA-AC-A2QJ TCGA-AC-A62V TCGA-AC-A6IW TCGA-AC-A7VC TCGA-AC-A8OP TCGA-AN-A03X 
        2.27        11.44        13.58         0.03        20.19         0.33 
TCGA-AN-A03Y TCGA-AN-A041 TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A0AJ 
        0.33         0.23         0.62         2.96         1.78         9.96 
TCGA-AN-A0AK TCGA-AN-A0AL TCGA-AN-A0AM TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0FJ 
        7.36         6.51         0.16         0.33         6.44         7.96 
TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FZ TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XS 
        0.33         0.36         0.33         0.33        12.33         0.33 
TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03L TCGA-AO-A03N TCGA-AO-A03V TCGA-AO-A0J3 
        5.33         5.59        80.28        66.77        29.13        21.40 
TCGA-AO-A0J4 TCGA-AO-A0J5 TCGA-AO-A0J6 TCGA-AO-A0JA TCGA-AO-A0JD TCGA-AO-A0JE 
       52.18        26.04        37.48        21.53        72.00        76.77 
TCGA-AO-A1KQ TCGA-AO-A1KR TCGA-AO-A1KS TCGA-AO-A1KT TCGA-AQ-A04H TCGA-AQ-A04L 
       61.87        70.39         0.53        17.79        24.79       130.09 
TCGA-AQ-A0Y5 TCGA-AQ-A1H2 TCGA-AQ-A54O TCGA-AR-A0TQ TCGA-AR-A0TR TCGA-AR-A0TS 
        5.65        15.62        32.91        73.64         5.26        74.79 
TCGA-AR-A0TV TCGA-AR-A0TW TCGA-AR-A0TY TCGA-AR-A0TZ TCGA-AR-A0U1 TCGA-AR-A0U2 
       42.35        98.93        55.86       107.24       101.95        83.87 
TCGA-AR-A0U3 TCGA-AR-A0U4 TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AP TCGA-AR-A1AW 
      114.02        85.97        75.55        61.84        39.98        63.62 
TCGA-AR-A24K TCGA-AR-A24N TCGA-AR-A24Q TCGA-AR-A24R TCGA-AR-A24S TCGA-AR-A24V 
       50.89        78.51       104.28        87.22        97.84        85.35 
TCGA-AR-A24W TCGA-AR-A24Z TCGA-AR-A251 TCGA-AR-A252 TCGA-AR-A255 TCGA-AR-A2LK 
       50.96        79.00        78.48        73.18        58.92        54.21 
TCGA-B6-A0I9 TCGA-B6-A0IB TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0IO TCGA-B6-A0RO 
       12.13       129.57       176.98        18.77       110.14       162.05 
TCGA-B6-A0RP TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0WY TCGA-B6-A401 TCGA-B6-A408 
      102.77        79.63        18.35       113.79        85.35        68.12 
TCGA-BH-A0AU TCGA-BH-A0AW TCGA-BH-A0AZ TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B5 
       24.53        20.45        28.50        39.55        39.16        48.36 
TCGA-BH-A0B7 TCGA-BH-A0BF TCGA-BH-A0BG TCGA-BH-A0BL TCGA-BH-A0BP TCGA-BH-A0BR 
       56.98        25.71        24.85        44.05        48.69        53.69 
TCGA-BH-A0BV TCGA-BH-A0BW TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DI TCGA-BH-A0DK 
       49.94        11.67        48.13        42.90        22.13        13.91 
TCGA-BH-A0DL TCGA-BH-A0DQ TCGA-BH-A0E6 TCGA-BH-A0EB TCGA-BH-A0GY TCGA-BH-A0H7 
       48.23         3.22         9.63        24.49        30.35        23.08 
TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0HY TCGA-BH-A0W3 TCGA-BH-A18K TCGA-BH-A18L 
       41.00        52.96        50.79        23.93        90.84        26.66 
TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1EN TCGA-BH-A1ES TCGA-BH-A1EY 
        7.36        51.39        51.16        69.93       113.82        17.69 
TCGA-BH-A1F2 TCGA-BH-A1F8 TCGA-BH-A1FM TCGA-BH-A1FU TCGA-BH-A208 TCGA-BH-A209 
       31.53        24.66        45.63        72.07        57.83       130.16 
TCGA-BH-A42T TCGA-BH-A6R9 TCGA-BH-AB28 TCGA-C8-A12L TCGA-C8-A12M TCGA-C8-A12O 
       10.52         5.26         9.44        11.93        11.77        12.66 
TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12U TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A12Z 
       11.77        12.66        12.66        12.66        12.66         0.39 
TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A132 TCGA-C8-A137 TCGA-C8-A1HG TCGA-C8-A1HL 
        3.16         2.24         1.87         4.11        11.34        10.42 
TCGA-C8-A1HM TCGA-C8-A26V TCGA-C8-A26Y TCGA-C8-A273 TCGA-C8-A27B TCGA-C8-A8HP 
        2.30         0.30         0.43         9.67         0.99        13.02 
TCGA-C8-A8HR TCGA-C8-A9FZ TCGA-D8-A13Y TCGA-D8-A13Z TCGA-D8-A143 TCGA-D8-A145 
       13.41        19.46        11.90        20.88        14.17        13.48 
TCGA-D8-A1J9 TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JE TCGA-D8-A1JF TCGA-D8-A1JG 
       17.49        18.71        15.78        18.90        12.03        12.03 
TCGA-D8-A1JI TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JM TCGA-D8-A1X5 TCGA-D8-A1X6 
       18.97        20.09        20.12        19.40        18.58        17.79 
TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XD TCGA-D8-A1XQ TCGA-D8-A1XS TCGA-D8-A1XT 
       23.90        27.58        17.16        16.41        16.31         6.35 
TCGA-D8-A1XU TCGA-D8-A1XY TCGA-D8-A1Y3 TCGA-D8-A27F TCGA-D8-A27H TCGA-D8-A27N 
       12.99        16.54        14.14        16.04        13.05         4.80 
TCGA-D8-A27R TCGA-D8-A27W TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A14O TCGA-E2-A14P 
       10.09        12.26        46.59        40.41        44.68        40.96 
TCGA-E2-A14T TCGA-E2-A14W TCGA-E2-A14Z TCGA-E2-A152 TCGA-E2-A15A TCGA-E2-A15E 
       33.30        32.02        18.51        27.12        23.34        20.71 
TCGA-E2-A15F TCGA-E2-A15H TCGA-E2-A15S TCGA-E2-A1IO TCGA-E2-A1LA TCGA-E2-A1LB 
       21.63        12.92        14.07        20.98        24.59        40.47 
TCGA-E2-A1LE TCGA-E2-A1LH TCGA-E2-A1LK TCGA-E2-A1LL TCGA-E2-A56Z TCGA-E2-A573 
       28.90       106.75         8.75        43.04         8.28        34.92 
TCGA-E9-A1N3 TCGA-E9-A1N9 TCGA-E9-A1NA TCGA-E9-A1NC TCGA-E9-A1NF TCGA-E9-A1NI 
       34.82        13.12        36.56        39.55        35.24         9.86 
TCGA-E9-A1QZ TCGA-E9-A1R2 TCGA-E9-A1R4 TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RB 
       11.90        34.95         6.12         2.76        21.21        32.09 
TCGA-E9-A1RC TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RG TCGA-E9-A1RH TCGA-E9-A22A 
       40.24        34.65         6.58        21.27        34.59        39.09 
TCGA-E9-A22B TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A247 TCGA-E9-A3QA TCGA-E9-A54X 
       22.75        12.89        23.51        27.22        30.18        12.33 
TCGA-E9-A5UO TCGA-E9-A5UP TCGA-EW-A1J6 TCGA-EW-A1OV TCGA-EW-A1OY TCGA-EW-A1P3 
       13.81        14.40        28.77        25.94        29.85        52.96 
TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A1P8 TCGA-EW-A1PA TCGA-EW-A1PD TCGA-EW-A2FR 
       29.82        23.11         7.86        18.90        13.94        55.00 
TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A423 TCGA-EW-A424 TCGA-GI-A2C9 TCGA-GM-A2DB 
       52.73        25.91        10.16        23.51       109.87        79.10 
TCGA-HN-A2NL TCGA-JL-A3YX TCGA-LD-A7W5 TCGA-LD-A9QF TCGA-LL-A441 TCGA-LL-A6FQ 
        2.60        11.57         7.10        10.62        11.44         2.63 
TCGA-LL-A73Y TCGA-LL-A7SZ TCGA-LL-A7T0 TCGA-MS-A51U TCGA-OL-A5D6 TCGA-OL-A5RZ 
       15.68        14.70        12.36        22.39        36.30        22.32 
TCGA-OL-A66H TCGA-OL-A66N TCGA-OL-A66P TCGA-OL-A97C TCGA-PE-A5DC TCGA-S3-A6ZH 
       26.70        26.04        14.07         8.91        47.01        16.93 

$`DEL PEAK 17(9P21.3) WILD-TYPE`
TCGA-3C-AALJ TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT0 TCGA-5L-AAT1 TCGA-5T-A9QA 
       42.81        40.14        11.44        48.56        48.36         9.96 
TCGA-A1-A0SB TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI 
        8.52        14.37        43.43        14.27        47.24        20.88 
TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SP TCGA-A1-A0SQ TCGA-A2-A04N 
       31.79         7.96        39.32        19.20        18.21       104.81 
TCGA-A2-A04R TCGA-A2-A04U TCGA-A2-A04V TCGA-A2-A04W TCGA-A2-A04X TCGA-A2-A04Y 
      121.94        87.25        63.12       101.98        55.43        36.13 
TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CQ 
      136.73        99.12        24.79       114.81        92.48        88.60 
TCGA-A2-A0CR TCGA-A2-A0CS TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0CX 
      107.93        75.55         5.19        98.99       107.93        56.81 
TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0D4 TCGA-A2-A0EM TCGA-A2-A0EN 
       34.55        33.76        61.58        25.22       101.72       134.40 
TCGA-A2-A0EP TCGA-A2-A0ES TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0EY 
      107.61        72.00        31.82        61.94        24.72        63.29 
TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SX TCGA-A2-A0SY TCGA-A2-A0T1 TCGA-A2-A0T2 
       99.19        54.64        50.43        44.28        17.13         8.38 
TCGA-A2-A0T3 TCGA-A2-A0T4 TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC 
       49.84        20.52        17.46        18.90        20.75        32.55 
TCGA-A2-A0YD TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A0YK TCGA-A2-A0YL 
       25.28        21.67        49.48        18.61        19.33        48.46 
TCGA-A2-A0YM TCGA-A2-A1FV TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G4 TCGA-A2-A1G6 
       31.73        23.47        22.45        20.25        19.56        16.47 
TCGA-A2-A259 TCGA-A2-A25A TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25F TCGA-A2-A3KC 
       52.47       107.70        17.19        18.15        10.59        20.88 
TCGA-A2-A3KD TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XU TCGA-A2-A3XW TCGA-A2-A3XZ 
       39.65        33.93        83.01        29.98        49.48        50.37 
TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S2 TCGA-A7-A0CD 
        7.30        24.39        21.30        23.21        21.14        38.30 
TCGA-A7-A0CE TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0DB TCGA-A7-A13E TCGA-A7-A13G 
       35.31        34.29        35.47        33.11        20.19        23.61 
TCGA-A7-A13H TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26H TCGA-A7-A26I TCGA-A7-A26J 
       29.56        31.36        24.26        23.80        21.73        20.61 
TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3J1 TCGA-A7-A3RF TCGA-A7-A425 
       11.34        10.59        10.29        11.28        13.41        14.70 
TCGA-A7-A426 TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A56D TCGA-A7-A5ZW TCGA-A7-A5ZX 
       11.97        14.50        21.17        14.73        10.72        11.05 
TCGA-A7-A6VV TCGA-A7-A6VW TCGA-A7-A6VX TCGA-A8-A06P TCGA-A8-A06T TCGA-A8-A07B 
       10.29         9.37        10.42        13.02        53.06        43.00 
TCGA-A8-A07E TCGA-A8-A07F TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07O TCGA-A8-A07P 
       19.99        18.97        14.01        12.00         9.99        10.98 
TCGA-A8-A07R TCGA-A8-A07S TCGA-A8-A07U TCGA-A8-A07Z TCGA-A8-A082 TCGA-A8-A084 
        8.98         7.99        24.99        45.07        18.05        15.06 
TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08B TCGA-A8-A08C TCGA-A8-A08L 
       36.95        13.02         0.99        38.01        28.96         9.99 
TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A091 TCGA-A8-A092 TCGA-A8-A093 TCGA-A8-A095 
      112.08        43.00        33.01        30.97        17.95        41.98 
TCGA-A8-A09D TCGA-A8-A09K TCGA-A8-A09V TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0A4 
       50.04        29.98        15.02        14.01        12.00        13.02 
TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23E TCGA-AC-A23G TCGA-AC-A23H TCGA-AC-A2B8 
       38.04         0.95         2.37        10.85         5.72         1.48 
TCGA-AC-A2BK TCGA-AC-A2FB TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2FO 
       38.53        40.57        36.99        38.79        26.04        50.70 
TCGA-AC-A3BB TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3TN TCGA-AC-A3W5 
       32.45        16.31        14.83        22.19        14.99        16.57 
TCGA-AC-A3W6 TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A5XS TCGA-AC-A62X TCGA-AC-A62Y 
       19.79        23.24        24.79         1.55        13.71        17.42 
TCGA-AC-A6IV TCGA-AC-A6IX TCGA-AC-A6NO TCGA-AC-A7VB TCGA-AC-A8OQ TCGA-AC-A8OR 
       18.67        12.26         1.68         8.22         1.12         1.32 
TCGA-AC-A8OS TCGA-AN-A046 TCGA-AN-A04D TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0FF 
        2.30         0.33         1.71         0.33         0.33         5.65 
TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FX 
        7.00         7.59         7.17         6.28         7.04         0.33 
TCGA-AN-A0FY TCGA-AN-A0XL TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XT TCGA-AN-A0XU 
        0.33         0.33         0.30         0.33         0.33         0.33 
TCGA-AO-A03M TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03U 
       61.35        81.63        95.70        68.75        47.87        58.95 
TCGA-AO-A0J2 TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JB TCGA-AO-A0JC 
       32.78        20.32        22.36        53.03        50.70        50.86 
TCGA-AO-A0JF TCGA-AO-A0JG TCGA-AO-A0JI TCGA-AO-A0JJ TCGA-AO-A0JL TCGA-AO-A0JM 
       21.37        26.24        50.24        62.04        55.33        71.80 
TCGA-AO-A124 TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 TCGA-AO-A129 TCGA-AO-A12A 
      102.58        99.25       108.72       106.78       108.03        90.58 
TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A12E TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A12H 
       98.27        64.04        57.30        48.36        41.62        28.37 
TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AQ-A04J TCGA-AQ-A1H3 TCGA-AQ-A54N TCGA-AQ-A7U7 
       14.73        82.62        26.93        32.52         2.56        19.20 
TCGA-AR-A0TP TCGA-AR-A0TT TCGA-AR-A0TX TCGA-AR-A0U0 TCGA-AR-A1AJ TCGA-AR-A1AK 
      111.32        86.66        64.83        65.36        52.77        51.25 
TCGA-AR-A1AL TCGA-AR-A1AM TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AQ TCGA-AR-A1AR 
       48.82        76.11        43.73        43.56        43.07        17.23 
TCGA-AR-A1AS TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24H 
       37.81        76.21        61.28        62.14        33.73       160.90 
TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24T TCGA-AR-A24U 
       94.22        96.89        84.20         2.76        76.01        53.36 
TCGA-AR-A24X TCGA-AR-A250 TCGA-AR-A254 TCGA-AR-A256 TCGA-AR-A2LE TCGA-AR-A2LH 
       83.77        89.00        72.76        93.83       143.21        20.25 
TCGA-AR-A2LJ TCGA-AR-A2LL TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ 
       62.86        66.15        52.11        38.17        39.39        40.54 
TCGA-AR-A2LR TCGA-AR-A5QM TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 
       20.38        54.74        16.04        20.45        10.59        77.62 
TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0IA TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG 
      143.38       149.59       220.90        50.70        65.72       146.50 
TCGA-B6-A0IH TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RE 
      112.37       126.12        84.59       110.93       140.88       211.56 
TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RL TCGA-B6-A0RM TCGA-B6-A0RN 
       68.45       189.01       234.28        81.17        78.02       172.96 
TCGA-B6-A0RQ TCGA-B6-A0RS TCGA-B6-A0RT TCGA-B6-A0RU TCGA-B6-A0RV TCGA-B6-A0WS 
      140.48       100.70        89.46       131.21       157.41        97.48 
TCGA-B6-A0WT TCGA-B6-A0WX TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 
      188.68        21.47       129.57       129.70       186.48        28.27 
TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A1KN 
       68.94        58.88        43.59       101.52        73.51       139.17 
TCGA-B6-A2IU TCGA-B6-A402 TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AV TCGA-BH-A0AY 
      170.17        74.99       103.63        71.15        59.84        25.55 
TCGA-BH-A0B0 TCGA-BH-A0B2 TCGA-BH-A0B6 TCGA-BH-A0B9 TCGA-BH-A0BA TCGA-BH-A0BC 
       46.95        40.83        56.94        51.68        37.22        32.02 
TCGA-BH-A0BD TCGA-BH-A0BJ TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BQ TCGA-BH-A0BS 
       18.21        21.70        61.68        35.67        27.19        53.95 
TCGA-BH-A0BT TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0DD TCGA-BH-A0DE 
       45.57        49.05        41.75        44.02        45.83        31.17 
TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DO TCGA-BH-A0DP TCGA-BH-A0DS TCGA-BH-A0DT 
       23.44        38.01        17.26        15.65         2.56        38.47 
TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E2 
       67.86        47.41        16.27         4.41        15.68        14.30 
TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EA TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0GZ 
       44.81        46.19        32.58        31.00        24.43        10.78 
TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0HB TCGA-BH-A0HI 
       15.16        37.78        35.51        24.56        26.50        20.38 
TCGA-BH-A0HK TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW 
        5.85         2.50        13.61        36.85        12.89        51.32 
TCGA-BH-A0HX TCGA-BH-A0RX TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A0WA 
       27.25         5.59        24.95        42.35        44.81        23.05 
TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18M TCGA-BH-A18N 
        8.81         2.01         7.23        20.12        72.56        37.74 
TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18R TCGA-BH-A18S TCGA-BH-A1EO TCGA-BH-A1ET 
       30.28        55.63        37.55        66.05        91.99        82.85 
TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1EX TCGA-BH-A1F0 TCGA-BH-A1F5 
       42.28        12.00        55.69        49.58        25.81        89.16 
TCGA-BH-A1F6 TCGA-BH-A1FB TCGA-BH-A1FC TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FG 
       97.48       120.62       114.15        33.17        74.73       122.89 
TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FN TCGA-BH-A1FR TCGA-BH-A201 
       36.92        63.35        55.00        72.07       144.59        28.14 
TCGA-BH-A202 TCGA-BH-A203 TCGA-BH-A204 TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 
       26.14        38.60        83.31        10.65         6.44        20.12 
TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-BH-A6R8 TCGA-BH-A8FY 
      109.28         8.94        18.64        23.51         9.63         9.70 
TCGA-BH-A8FZ TCGA-BH-A8G0 TCGA-C8-A12N TCGA-C8-A12V TCGA-C8-A134 TCGA-C8-A135 
       18.87        21.76        11.77        12.66         1.12         1.05 
TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HI TCGA-C8-A1HJ TCGA-C8-A1HK 
        4.08        12.33        10.92        11.28         0.16        12.03 
TCGA-C8-A1HN TCGA-C8-A26W TCGA-C8-A26X TCGA-C8-A26Z TCGA-C8-A274 TCGA-C8-A275 
        3.25         0.23         0.36         8.28         9.53         0.03 
TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-C8-A8HQ TCGA-D8-A140 
        9.50        12.20         0.03         0.23        12.49        13.25 
TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A146 TCGA-D8-A147 TCGA-D8-A1J8 TCGA-D8-A1JA 
       20.58        13.97        21.14        19.20        14.17        16.50 
TCGA-D8-A1JD TCGA-D8-A1JH TCGA-D8-A1JL TCGA-D8-A1JN TCGA-D8-A1JP TCGA-D8-A1JS 
       18.15        14.01        20.09        20.38        21.01        12.20 
TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1XB TCGA-D8-A1XC 
       13.32        14.70        16.73        25.74        18.15        12.39 
TCGA-D8-A1XF TCGA-D8-A1XG TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XL TCGA-D8-A1XM 
       15.22        14.73        21.83        14.50        19.92        17.69 
TCGA-D8-A1XO TCGA-D8-A1XR TCGA-D8-A1XV TCGA-D8-A1XW TCGA-D8-A1XZ TCGA-D8-A1Y0 
       15.55        15.85        15.16        12.66        15.32        15.52 
TCGA-D8-A1Y1 TCGA-D8-A1Y2 TCGA-D8-A27E TCGA-D8-A27G TCGA-D8-A27I TCGA-D8-A27K 
        9.93        14.24        17.42        13.45        14.43         9.44 
TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27P TCGA-D8-A27T TCGA-D8-A27V TCGA-D8-A3Z5 
       16.41        13.48         0.76        13.08        12.53        33.37 
TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-D8-A73U TCGA-D8-A73W TCGA-D8-A73X TCGA-E2-A105 
       18.51        21.67        16.18         8.02        12.10        43.00 
TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A10B TCGA-E2-A10C TCGA-E2-A10E TCGA-E2-A10F 
       34.42        27.52        37.51        40.11        28.44        28.87 
TCGA-E2-A14N TCGA-E2-A14Q TCGA-E2-A14R TCGA-E2-A14S TCGA-E2-A14U TCGA-E2-A14V 
       47.15        38.24        38.60        33.17        43.33        34.26 
TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A150 TCGA-E2-A153 TCGA-E2-A154 TCGA-E2-A155 
       31.96        28.60        25.41        23.24        19.43        21.04 
TCGA-E2-A156 TCGA-E2-A158 TCGA-E2-A159 TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15G 
       23.87        14.79        25.05        22.82        17.29        18.21 
TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15O 
       17.42        19.40         9.04        20.58        11.05        13.02 
TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B1 
       19.56        17.06        14.99        60.53        53.62        53.03 
TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BC TCGA-E2-A1BD TCGA-E2-A1IE 
       33.01        32.35        28.50        16.47        17.10        38.30 
TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1IH TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IK 
       37.41        32.78        33.73        33.70        28.44        22.65 
TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L8 
        3.88        22.19        11.08        54.18        27.42        39.62 
TCGA-E2-A1L9 TCGA-E2-A1LG TCGA-E2-A1LI TCGA-E2-A2P5 TCGA-E2-A2P6 TCGA-E2-A3DX 
       19.66        18.87       102.61        16.93         5.52        15.72 
TCGA-E2-A570 TCGA-E2-A574 TCGA-E2-A576 TCGA-E2-A9RU TCGA-E9-A1N4 TCGA-E9-A1N5 
       30.61        26.56        34.29        12.85        32.88        36.82 
TCGA-E9-A1N6 TCGA-E9-A1N8 TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NG TCGA-E9-A1R0 
       13.48        12.00        12.59        35.77        25.84        28.27 
TCGA-E9-A1R3 TCGA-E9-A1R5 TCGA-E9-A1RA TCGA-E9-A1RD TCGA-E9-A1RI TCGA-E9-A226 
        2.56         3.02        32.09         1.12        35.64        34.13 
TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22D TCGA-E9-A22H TCGA-E9-A243 
       32.05        12.53        13.32        41.03        20.71        17.06 
TCGA-E9-A244 TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A295 TCGA-E9-A2JS 
        0.69         1.94         7.13        24.56         0.72        29.72 
TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3X8 TCGA-E9-A54Y TCGA-E9-A5FK 
        0.76        26.07        18.41        15.72        23.84        14.70 
TCGA-E9-A5FL TCGA-E9-A6HE TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ 
        0.79        15.39        12.20        39.72         8.48        18.21 
TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J5 TCGA-EW-A1OW TCGA-EW-A1OX 
       18.90        13.25        16.57        15.68        22.82        29.95 
TCGA-EW-A1OZ TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1PB 
       40.41        41.13        39.78        18.48        30.08        19.99 
TCGA-EW-A1PC TCGA-EW-A1PE TCGA-EW-A1PF TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FW 
        6.15        10.52        14.43        34.55        19.96        22.09 
TCGA-EW-A3E8 TCGA-EW-A3U0 TCGA-GI-A2C8 TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DC 
       34.03        17.49         7.40        59.57       216.76        83.34 
TCGA-GM-A2DD TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL 
       75.02        70.85        72.10        85.15        86.96       115.69 
TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A2DO TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG 
      106.06       101.62        85.35       110.50        38.20        43.73 
TCGA-GM-A3XL TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2OB 
       69.30        66.38        72.03        13.55        18.12        62.43 
TCGA-JL-A3YW TCGA-LD-A66U TCGA-LD-A74U TCGA-LD-A7W6 TCGA-LL-A440 TCGA-LL-A442 
       11.84        21.24        13.22        13.28        24.95        10.95 
TCGA-LL-A50Y TCGA-LL-A5YL TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LL-A5YP 
       25.05        17.06        15.32        14.70        14.47        14.79 
TCGA-LL-A6FP TCGA-LL-A6FR TCGA-LL-A73Z TCGA-LL-A740 TCGA-LL-A8F5 TCGA-LL-A9Q3 
       22.26        16.08         7.46        14.50        14.73        14.07 
TCGA-LQ-A4E4 TCGA-OK-A5Q2 TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RU 
       27.91         2.10        58.52        31.99        58.62        40.08 
TCGA-OL-A5RV TCGA-OL-A5RW TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5S0 TCGA-OL-A66I 
       34.92        36.36        28.87        24.72        20.38        23.47 
TCGA-OL-A66J TCGA-OL-A66K TCGA-OL-A66L TCGA-OL-A66O TCGA-OL-A6VO TCGA-OL-A6VQ 
       65.62        41.92        42.77        17.36        28.21        19.73 
TCGA-OL-A6VR TCGA-PE-A5DD TCGA-PE-A5DE TCGA-PL-A8LX TCGA-PL-A8LY TCGA-PL-A8LZ 
       40.11        64.21        86.96         0.16         0.26         9.93 
TCGA-S3-A6ZF TCGA-S3-A6ZG TCGA-S3-AA0Z TCGA-S3-AA10 TCGA-S3-AA11 TCGA-S3-AA12 
       16.50        13.12        16.80        15.39        13.84        15.35 
TCGA-S3-AA14 TCGA-S3-AA15 TCGA-S3-AA17 TCGA-UL-AAZ6 TCGA-UU-A93S TCGA-W8-A86G 
       14.96        13.84        13.94        17.03         3.81        11.41 
TCGA-WT-AB41 TCGA-WT-AB44 TCGA-XX-A899 TCGA-XX-A89A TCGA-Z7-A8R5 TCGA-Z7-A8R6 
       52.96        29.03        15.35        16.04       108.07       107.05 

  DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE 
                         0.03                          0.03 
  DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE 
                       176.98                        234.28 
  DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE 
                       23.095                        25.050 
[1] "0.0 - 177.0 (23.1)" "0.0 - 234.3 (25.1)"
[1] "hr=" "1.5"
D46V2, continuous
                               vv
clus                            STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  DEL PEAK 17(9P21.3) MUTATED        24       22        2        0       113
  DEL PEAK 17(9P21.3) WILD-TYPE      65       59        6        3       240
                               vv
clus                            STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  DEL PEAK 17(9P21.3) MUTATED          75         1         64         17
  DEL PEAK 17(9P21.3) WILD-TYPE       170         1         86         12
                               vv
clus                            STAGE IIIC STAGE IV STAGE TIS STAGE X
  DEL PEAK 17(9P21.3) MUTATED           23       10         0       6
  DEL PEAK 17(9P21.3) WILD-TYPE         40       10         1       7
D46V3, multiclass
            clus
vv           DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE
  STAGE I                             24                            65
  STAGE IA                            22                            59
  STAGE IB                             2                             6
  STAGE II                             0                             3
  STAGE IIA                          113                           240
  STAGE IIB                           75                           170
  STAGE III                            1                             1
  STAGE IIIA                          64                            86
  STAGE IIIB                          17                            12
  STAGE IIIC                          23                            40
  STAGE IV                            10                            10
  STAGE TIS                            0                             1
  STAGE X                              6                             7
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                             T1  T2  T3  T4
  DEL PEAK 17(9P21.3) MUTATED    71 225  41  20
  DEL PEAK 17(9P21.3) WILD-TYPE 201 391  89  20
D46V4, multiclass
    clus
vv   DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE
  T1                          71                           201
  T2                         225                           391
  T3                          41                            89
  T4                          20                            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                             N0  N1  N2  N3
  DEL PEAK 17(9P21.3) MUTATED   159 107  57  30
  DEL PEAK 17(9P21.3) WILD-TYPE 342 243  60  45
D46V5, multiclass
    clus
vv   DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE
  N0                         159                           342
  N1                         107                           243
  N2                          57                            60
  N3                          30                            45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D46V6, binary
                               cls
clus                              0   1
  DEL PEAK 17(9P21.3) MUTATED   303  11
  DEL PEAK 17(9P21.3) WILD-TYPE 576  10
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 17(9P21.3) MUTATED    303   11
  DEL PEAK 17(9P21.3) WILD-TYPE  576   10
   clus
vv  DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE
  0                         303                           576
  1                          11                            10
[1] 2 2
[1] FALSE
D46V7, binary
                               cls
clus                              0   1
  DEL PEAK 17(9P21.3) MUTATED   351   7
  DEL PEAK 17(9P21.3) WILD-TYPE 700   4
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 17(9P21.3) MUTATED    351    7
  DEL PEAK 17(9P21.3) WILD-TYPE  700    4
        clus
vv       DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE
  FEMALE                         351                           700
  MALE                             7                             4
[1] 2 2
[1] FALSE
                               vv
clus                            INFILTRATING CARCINOMA NOS
  DEL PEAK 17(9P21.3) MUTATED                            1
  DEL PEAK 17(9P21.3) WILD-TYPE                          0
                               vv
clus                            INFILTRATING DUCTAL CARCINOMA
  DEL PEAK 17(9P21.3) MUTATED                             297
  DEL PEAK 17(9P21.3) WILD-TYPE                           466
                               vv
clus                            INFILTRATING LOBULAR CARCINOMA
  DEL PEAK 17(9P21.3) MUTATED                               23
  DEL PEAK 17(9P21.3) WILD-TYPE                            169
                               vv
clus                            MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  DEL PEAK 17(9P21.3) MUTATED                     4                     3
  DEL PEAK 17(9P21.3) WILD-TYPE                   2                     1
                               vv
clus                            MIXED HISTOLOGY (PLEASE SPECIFY)
  DEL PEAK 17(9P21.3) MUTATED                                 12
  DEL PEAK 17(9P21.3) WILD-TYPE                               18
                               vv
clus                            MUCINOUS CARCINOMA OTHER  SPECIFY
  DEL PEAK 17(9P21.3) MUTATED                    5             13
  DEL PEAK 17(9P21.3) WILD-TYPE                 12             35
D46V8, multiclass
                                  clus
vv                                 DEL PEAK 17(9P21.3) MUTATED
  INFILTRATING CARCINOMA NOS                                 1
  INFILTRATING DUCTAL CARCINOMA                            297
  INFILTRATING LOBULAR CARCINOMA                            23
  MEDULLARY CARCINOMA                                        4
  METAPLASTIC CARCINOMA                                      3
  MIXED HISTOLOGY (PLEASE SPECIFY)                          12
  MUCINOUS CARCINOMA                                         5
  OTHER  SPECIFY                                            13
                                  clus
vv                                 DEL PEAK 17(9P21.3) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                   0
  INFILTRATING DUCTAL CARCINOMA                              466
  INFILTRATING LOBULAR CARCINOMA                             169
  MEDULLARY CARCINOMA                                          2
  METAPLASTIC CARCINOMA                                        1
  MIXED HISTOLOGY (PLEASE SPECIFY)                            18
  MUCINOUS CARCINOMA                                          12
  OTHER  SPECIFY                                              35
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D46V9, binary
                               cls
clus                              0   1
  DEL PEAK 17(9P21.3) MUTATED   103 255
  DEL PEAK 17(9P21.3) WILD-TYPE 185 519
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 17(9P21.3) MUTATED    103  255
  DEL PEAK 17(9P21.3) WILD-TYPE  185  519
     clus
vv    DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE
  NO                          103                           185
  YES                         255                           519
[1] 2 2
[1] FALSE
D46V10, continuous
                               vv
clus                            AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 17(9P21.3) MUTATED                                  0    26
  DEL PEAK 17(9P21.3) WILD-TYPE                                1    34
                               vv
clus                            BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 17(9P21.3) MUTATED                          55   230
  DEL PEAK 17(9P21.3) WILD-TYPE                       115   506
D46V11, multiclass
                                  clus
vv                                 DEL PEAK 17(9P21.3) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                           0
  ASIAN                                                     26
  BLACK OR AFRICAN AMERICAN                                 55
  WHITE                                                    230
                                  clus
vv                                 DEL PEAK 17(9P21.3) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                             1
  ASIAN                                                       34
  BLACK OR AFRICAN AMERICAN                                  115
  WHITE                                                      506
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D46V12, binary
                               cls
clus                              0   1
  DEL PEAK 17(9P21.3) MUTATED    11 281
  DEL PEAK 17(9P21.3) WILD-TYPE  27 577
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 17(9P21.3) MUTATED     11  281
  DEL PEAK 17(9P21.3) WILD-TYPE   27  577
                        clus
vv                       DEL PEAK 17(9P21.3) MUTATED
  HISPANIC OR LATINO                              11
  NOT HISPANIC OR LATINO                         281
                        clus
vv                       DEL PEAK 17(9P21.3) WILD-TYPE
  HISPANIC OR LATINO                                27
  NOT HISPANIC OR LATINO                           577
[1] 2 2
[1] FALSE

Clustering(47) Variable = DEL PEAK 18(9Q21.11) MUTATION ANALYSIS
D47V1, survival
                                sevent
clus2                              0   1
  DEL PEAK 18(9Q21.11) MUTATED   250  39
  DEL PEAK 18(9Q21.11) WILD-TYPE 666  89
  DEL PEAK 18(9Q21.11) MUTATED DEL PEAK 18(9Q21.11) WILD-TYPE 
                           289                            755 
  DEL PEAK 18(9Q21.11) MUTATED DEL PEAK 18(9Q21.11) WILD-TYPE 
                            39                             89 
$`DEL PEAK 18(9Q21.11) MUTATED`
TCGA-3C-AAAU TCGA-A1-A0SJ TCGA-A1-A0SM TCGA-A1-A0SO TCGA-A2-A04T TCGA-A2-A04W 
      129.14        13.68         7.96        28.01        73.84       101.98 
TCGA-A2-A04Y TCGA-A2-A0CL TCGA-A2-A0CT TCGA-A2-A0D0 TCGA-A2-A0EO TCGA-A2-A0ET 
       36.13        99.12        75.25        67.33        80.28        35.05 
TCGA-A2-A0EU TCGA-A2-A0EY TCGA-A2-A0SX TCGA-A2-A0T1 TCGA-A2-A0YE TCGA-A2-A0YH 
       34.29        63.29        50.43        17.13        18.21        21.67 
TCGA-A2-A0YT TCGA-A2-A1FW TCGA-A2-A1FX TCGA-A2-A1G1 TCGA-A2-A3XS TCGA-A2-A3XX 
       23.77        17.36        60.72        19.20        33.93        47.31 
TCGA-A2-A3XY TCGA-A2-A4S3 TCGA-A7-A0CE TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DC 
       34.98        21.90        35.31        37.45        35.67        29.79 
TCGA-A7-A13D TCGA-A7-A13F TCGA-A7-A4SB TCGA-A7-A4SD TCGA-A7-A4SF TCGA-A7-A6VV 
       31.73        25.15        13.74        14.50        17.92        10.29 
TCGA-A8-A06O TCGA-A8-A06Q TCGA-A8-A06R TCGA-A8-A06T TCGA-A8-A06X TCGA-A8-A06Y 
       13.02         1.02        17.98        53.06        31.00        26.01 
TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A079 TCGA-A8-A07G TCGA-A8-A07P TCGA-A8-A07R 
        1.02        17.03         9.01        18.97        10.98         8.98 
TCGA-A8-A07W TCGA-A8-A08F TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08O TCGA-A8-A08P 
        9.99        33.01        12.00        37.05        31.00        31.00 
TCGA-A8-A08R TCGA-A8-A08S TCGA-A8-A08X TCGA-A8-A09B TCGA-A8-A09C TCGA-A8-A09I 
        0.99        33.01        43.00        12.00         1.02        45.07 
TCGA-A8-A09M TCGA-A8-A09Q TCGA-A8-A09T TCGA-A8-A0A2 TCGA-A8-A0A6 TCGA-A8-A0A7 
       33.07        25.02        19.04        19.04        21.04         0.99 
TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-AC-A2BM TCGA-AC-A2FF TCGA-AC-A2QH TCGA-AC-A2QI 
       27.02        17.03        99.35        55.43        33.04         0.92 
TCGA-AC-A2QJ TCGA-AC-A62V TCGA-AC-A62X TCGA-AC-A6IW TCGA-AC-A7VC TCGA-AC-A8OQ 
        2.27        11.44        13.71        13.58         0.03         1.12 
TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A041 TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A0AK 
        0.33         0.33         0.23         2.96         1.78         7.36 
TCGA-AN-A0AM TCGA-AN-A0FJ TCGA-AN-A0FT TCGA-AN-A0FW TCGA-AN-A0FY TCGA-AN-A0FZ 
        0.16         7.96         7.04         0.36         0.33         0.33 
TCGA-AN-A0XO TCGA-AN-A0XS TCGA-AN-A0XU TCGA-AO-A03L TCGA-AO-A03N TCGA-AO-A03O 
       12.33         0.33         0.33        80.28        66.77        81.63 
TCGA-AO-A0J3 TCGA-AO-A0J4 TCGA-AO-A0J5 TCGA-AO-A0JD TCGA-AO-A0JL TCGA-AO-A12F 
       21.40        52.18        26.04        72.00        55.33        48.36 
TCGA-AO-A1KQ TCGA-AO-A1KR TCGA-AO-A1KS TCGA-AO-A1KT TCGA-AQ-A0Y5 TCGA-AQ-A1H2 
       61.87        70.39         0.53        17.79         5.65        15.62 
TCGA-AQ-A54N TCGA-AQ-A54O TCGA-AR-A0TP TCGA-AR-A0TS TCGA-AR-A0TY TCGA-AR-A0U0 
        2.56        32.91       111.32        74.79        55.86        65.36 
TCGA-AR-A0U3 TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AP TCGA-AR-A1AQ TCGA-AR-A1AW 
      114.02        75.55        61.84        39.98        43.07        63.62 
TCGA-AR-A1AY TCGA-AR-A24K TCGA-AR-A24N TCGA-AR-A24S TCGA-AR-A24V TCGA-AR-A24Z 
       33.73        50.89        78.51        97.84        85.35        79.00 
TCGA-AR-A252 TCGA-AR-A255 TCGA-AR-A2LK TCGA-AR-A2LR TCGA-B6-A0I9 TCGA-B6-A0IB 
       73.18        58.92        54.21        20.38        12.13       129.57 
TCGA-B6-A0IO TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RL TCGA-B6-A0RO 
      110.14       110.93       140.88       211.56        81.17       162.05 
TCGA-B6-A0RP TCGA-B6-A0RS TCGA-B6-A0RU TCGA-B6-A0WY TCGA-B6-A1KC TCGA-B6-A401 
      102.77       100.70       131.21       113.79        43.59        85.35 
TCGA-B6-A402 TCGA-B6-A408 TCGA-BH-A0AU TCGA-BH-A0B3 TCGA-BH-A0B5 TCGA-BH-A0B7 
       74.99        68.12        24.53        39.55        48.36        56.98 
TCGA-BH-A0B9 TCGA-BH-A0BF TCGA-BH-A0BL TCGA-BH-A0BP TCGA-BH-A0BT TCGA-BH-A0BV 
       51.68        25.71        44.05        48.69        45.57        49.94 
TCGA-BH-A0C3 TCGA-BH-A0E6 TCGA-BH-A0EB TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H7 
       48.13         9.63        24.49        30.35        10.78        23.08 
TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0W3 TCGA-BH-A18K TCGA-BH-A18Q TCGA-BH-A18T 
       41.00        52.96        23.93        90.84        55.63         7.36 
TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1ES TCGA-BH-A1EV TCGA-BH-A1F8 TCGA-BH-A1FD 
       51.39        51.16       113.82        12.00        24.66        33.17 
TCGA-BH-A1FE TCGA-BH-A1FM TCGA-BH-A1FN TCGA-BH-A1FU TCGA-BH-A208 TCGA-BH-A209 
       74.73        45.63        72.07        72.07        57.83       130.16 
TCGA-BH-A42T TCGA-BH-AB28 TCGA-C8-A12L TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12W 
       10.52         9.44        11.93        12.66        11.77        12.66 
TCGA-C8-A12X TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A138 TCGA-C8-A1HN TCGA-C8-A26X 
       12.66         3.16         2.24         4.08         3.25         0.36 
TCGA-C8-A26Z TCGA-C8-A8HR TCGA-D8-A13Z TCGA-D8-A143 TCGA-D8-A145 TCGA-D8-A1J9 
        8.28        13.41        20.88        14.17        13.48        17.49 
TCGA-D8-A1JC TCGA-D8-A1JI TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1X5 TCGA-D8-A1X6 
       15.78        18.97        20.09        20.12        18.58        17.79 
TCGA-D8-A1XA TCGA-D8-A1XD TCGA-D8-A1XK TCGA-D8-A1XS TCGA-D8-A1XY TCGA-D8-A1Y3 
       27.58        17.16        14.50        16.31        16.54        14.14 
TCGA-D8-A27F TCGA-D8-A27R TCGA-D8-A27W TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A14O 
       16.04        10.09        12.26        46.59        40.41        44.68 
TCGA-E2-A14P TCGA-E2-A14R TCGA-E2-A14W TCGA-E2-A14X TCGA-E2-A14Z TCGA-E2-A154 
       40.96        38.60        32.02        31.96        18.51        19.43 
TCGA-E2-A159 TCGA-E2-A15A TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A1AZ TCGA-E2-A1II 
       25.05        23.34        20.71        21.63        60.53        33.70 
TCGA-E2-A1IO TCGA-E2-A1LB TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A56Z TCGA-E2-A573 
       20.98        40.47       102.61         8.75         8.28        34.92 
TCGA-E9-A1N4 TCGA-E9-A1N9 TCGA-E9-A1NA TCGA-E9-A1NF TCGA-E9-A1NI TCGA-E9-A1QZ 
       32.88        13.12        36.56        35.24         9.86        11.90 
TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RG TCGA-E9-A1RH 
        2.76        21.21        32.09        40.24        21.27        34.59 
TCGA-E9-A22B TCGA-E9-A243 TCGA-E9-A295 TCGA-E9-A5UO TCGA-E9-A5UP TCGA-EW-A1J6 
       22.75        17.06         0.72        13.81        14.40        28.77 
TCGA-EW-A1OV TCGA-EW-A1OW TCGA-EW-A1OY TCGA-EW-A1P3 TCGA-EW-A1P5 TCGA-EW-A1P8 
       25.94        22.82        29.85        52.96        23.11         7.86 
TCGA-EW-A1PA TCGA-EW-A1PH TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A3E8 
       18.90        19.96        55.00        52.73        25.91        34.03 
TCGA-EW-A3U0 TCGA-EW-A423 TCGA-EW-A424 TCGA-GI-A2C9 TCGA-GM-A2DB TCGA-GM-A2DF 
       17.49        10.16        23.51       109.87        79.10        70.85 
TCGA-GM-A2DH TCGA-GM-A4E0 TCGA-JL-A3YX TCGA-LL-A441 TCGA-LL-A5YM TCGA-LL-A5YP 
       72.10        72.03        11.57        11.44        15.32        14.79 
TCGA-LL-A6FQ TCGA-LL-A6FR TCGA-LL-A7SZ TCGA-LL-A7T0 TCGA-OL-A5D6 TCGA-OL-A5RW 
        2.63        16.08        14.70        12.36        36.30        36.36 
TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66N TCGA-OL-A66P TCGA-S3-A6ZF TCGA-S3-A6ZH 
       22.32        20.38        26.04        14.07        16.50        16.93 
TCGA-S3-AA14 
       14.96 

$`DEL PEAK 18(9Q21.11) WILD-TYPE`
TCGA-3C-AALI TCGA-3C-AALJ TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT0 TCGA-5L-AAT1 
      131.67        42.81        40.14        11.44        48.56        48.36 
TCGA-5T-A9QA TCGA-A1-A0SB TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG 
        9.96         8.52        14.37        43.43        48.10        14.27 
TCGA-A1-A0SH TCGA-A1-A0SI TCGA-A1-A0SK TCGA-A1-A0SN TCGA-A1-A0SP TCGA-A1-A0SQ 
       47.24        20.88        31.79        39.32        19.20        18.21 
TCGA-A2-A04N TCGA-A2-A04P TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04U TCGA-A2-A04V 
      104.81        18.02        78.41       121.94        87.25        63.12 
TCGA-A2-A04X TCGA-A2-A0CK TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CQ 
       55.43       136.73        24.79       114.81        92.48        88.60 
TCGA-A2-A0CR TCGA-A2-A0CS TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0CX 
      107.93        75.55         5.19        98.99       107.93        56.81 
TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0D4 TCGA-A2-A0EM TCGA-A2-A0EN 
       34.55        33.76        61.58        25.22       101.72       134.40 
TCGA-A2-A0EP TCGA-A2-A0EQ TCGA-A2-A0ER TCGA-A2-A0ES TCGA-A2-A0EV TCGA-A2-A0EW 
      107.61        79.76        74.40        72.00        31.82        61.94 
TCGA-A2-A0EX TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0SY 
       24.72        99.19        54.64        27.12        44.88        44.28 
TCGA-A2-A0T0 TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T4 TCGA-A2-A0T5 TCGA-A2-A0T6 
       17.52         8.38        49.84        20.52        17.46        18.90 
TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YF TCGA-A2-A0YG TCGA-A2-A0YI 
       20.75        32.55        25.28        50.47        21.90        49.48 
TCGA-A2-A0YJ TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A0YM TCGA-A2-A1FV TCGA-A2-A1FZ 
       18.61        19.33        48.46        31.73        23.47        22.45 
TCGA-A2-A1G0 TCGA-A2-A1G4 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25A TCGA-A2-A25B 
       20.25        19.56        16.47        52.47       107.70        42.44 
TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD 
       17.19        18.15       105.34        10.59        20.88        39.65 
TCGA-A2-A3XT TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XZ TCGA-A2-A3Y0 
       83.01        29.98        32.75        49.48        50.37        38.37 
TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S2 
        7.30        24.39        21.30        23.21        26.96        21.14 
TCGA-A7-A0CD TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0CJ TCGA-A7-A0DB TCGA-A7-A13E 
       38.30        34.29        35.47        30.61        33.11        20.19 
TCGA-A7-A13G TCGA-A7-A13H TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26G TCGA-A7-A26H 
       23.61        29.56        31.36        24.26        23.74        23.80 
TCGA-A7-A26I TCGA-A7-A26J TCGA-A7-A2KD TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J0 
       21.73        20.61        22.32        11.34        10.59        10.29 
TCGA-A7-A3J1 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A426 TCGA-A7-A4SA TCGA-A7-A4SE 
       11.28        13.41        14.70        11.97        14.93        21.17 
TCGA-A7-A56D TCGA-A7-A5ZV TCGA-A7-A5ZW TCGA-A7-A5ZX TCGA-A7-A6VW TCGA-A7-A6VX 
       14.73        12.10        10.72        11.05         9.37        10.42 
TCGA-A7-A6VY TCGA-A8-A06P TCGA-A8-A06U TCGA-A8-A076 TCGA-A8-A07B TCGA-A8-A07E 
        8.75        13.02        29.03        53.98        43.00        19.99 
TCGA-A8-A07F TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07L TCGA-A8-A07O TCGA-A8-A07S 
       18.97        14.01        12.00        32.05         9.99         7.99 
TCGA-A8-A07U TCGA-A8-A07Z TCGA-A8-A082 TCGA-A8-A084 TCGA-A8-A085 TCGA-A8-A086 
       24.99        45.07        18.05        15.06        36.95        13.02 
TCGA-A8-A08A TCGA-A8-A08B TCGA-A8-A08C TCGA-A8-A08G TCGA-A8-A08L TCGA-A8-A08T 
        0.99        38.01        28.96        19.96         9.99       112.08 
TCGA-A8-A08Z TCGA-A8-A091 TCGA-A8-A092 TCGA-A8-A093 TCGA-A8-A095 TCGA-A8-A097 
       40.01        33.01        30.97        17.95        41.98        12.00 
TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09D TCGA-A8-A09E TCGA-A8-A09K TCGA-A8-A09N 
        9.99         9.99        50.04        49.05        29.98         1.02 
TCGA-A8-A09R TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0A4 
        8.98        15.02         0.99        14.01        12.00        13.02 
TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23E TCGA-AC-A23G TCGA-AC-A23H TCGA-AC-A2B8 
       38.04         0.95         2.37        10.85         5.72         1.48 
TCGA-AC-A2BK TCGA-AC-A2FB TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2FO 
       38.53        40.57        36.99        38.79        26.04        50.70 
TCGA-AC-A3BB TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3TN TCGA-AC-A3W5 
       32.45        16.31        14.83        22.19        14.99        16.57 
TCGA-AC-A3W6 TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A5XS TCGA-AC-A62Y TCGA-AC-A6IV 
       19.79        23.24        24.79         1.55        17.42        18.67 
TCGA-AC-A6IX TCGA-AC-A6NO TCGA-AC-A7VB TCGA-AC-A8OP TCGA-AC-A8OR TCGA-AC-A8OS 
       12.26         1.68         8.22        20.19         1.32         2.30 
TCGA-AN-A046 TCGA-AN-A049 TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AL TCGA-AN-A0AR 
        0.33         0.62         1.71         9.96         6.51         0.33 
TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FK TCGA-AN-A0FL 
        0.33         0.33         6.44         5.65         7.00         7.59 
TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FV TCGA-AN-A0FX TCGA-AN-A0XL TCGA-AN-A0XN 
        7.17         6.28         0.33         0.33         0.33         0.33 
TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XT TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03M 
        0.30         0.33         0.33         5.33         5.59        61.35 
TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J2 
       95.70        68.75        47.87        58.95        29.13        32.78 
TCGA-AO-A0J6 TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JB 
       37.48        20.32        22.36        53.03        21.53        50.70 
TCGA-AO-A0JC TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JG TCGA-AO-A0JI TCGA-AO-A0JJ 
       50.86        76.77        21.37        26.24        50.24        62.04 
TCGA-AO-A0JM TCGA-AO-A124 TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 TCGA-AO-A129 
       71.80       102.58        99.25       108.72       106.78       108.03 
TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A12E TCGA-AO-A12G TCGA-AO-A12H 
       90.58        98.27        64.04        57.30        41.62        28.37 
TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A1H3 
       14.73        82.62        24.79        26.93       130.09        32.52 
TCGA-AQ-A7U7 TCGA-AR-A0TQ TCGA-AR-A0TR TCGA-AR-A0TT TCGA-AR-A0TV TCGA-AR-A0TW 
       19.20        73.64         5.26        86.66        42.35        98.93 
TCGA-AR-A0TX TCGA-AR-A0TZ TCGA-AR-A0U1 TCGA-AR-A0U2 TCGA-AR-A0U4 TCGA-AR-A1AJ 
       64.83       107.24       101.95        83.87        85.97        52.77 
TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AM TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AR 
       51.25        48.82        76.11        43.73        43.56        17.23 
TCGA-AR-A1AS TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A1AX TCGA-AR-A24H TCGA-AR-A24L 
       37.81        76.21        61.28        62.14       160.90        94.22 
TCGA-AR-A24M TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24Q TCGA-AR-A24R TCGA-AR-A24T 
       96.89        84.20         2.76       104.28        87.22        76.01 
TCGA-AR-A24U TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A250 TCGA-AR-A251 TCGA-AR-A254 
       53.36        50.96        83.77        89.00        78.48        72.76 
TCGA-AR-A256 TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LL TCGA-AR-A2LM 
       93.83       143.21        20.25        62.86        66.15        52.11 
TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A5QM TCGA-AR-A5QN TCGA-AR-A5QP 
       38.17        39.39        40.54        54.74        16.04        20.45 
TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0IA TCGA-B6-A0IC 
       10.59        77.62       143.38       149.59       220.90        50.70 
TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0IM 
       65.72       146.50       112.37       176.98        18.77       126.12 
TCGA-B6-A0IN TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RM TCGA-B6-A0RN 
       84.59        68.45       189.01       234.28        78.02       172.96 
TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WV 
      140.48        89.46       157.41        97.48       188.68        79.63 
TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 
       18.35        21.47       129.57       129.70       186.48        28.27 
TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A1KN TCGA-B6-A2IU 
       68.94        58.88       101.52        73.51       139.17       170.17 
TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AV TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0AZ 
      103.63        71.15        59.84        20.45        25.55        28.50 
TCGA-BH-A0B0 TCGA-BH-A0B2 TCGA-BH-A0B4 TCGA-BH-A0B6 TCGA-BH-A0BA TCGA-BH-A0BC 
       46.95        40.83        39.16        56.94        37.22        32.02 
TCGA-BH-A0BD TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BQ 
       18.21        24.85        21.70        61.68        35.67        27.19 
TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BW TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C1 
       53.69        53.95        11.67        49.05        41.75        44.02 
TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DI 
       42.90        45.83        31.17        23.44        38.01        22.13 
TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DO TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0DS 
       13.91        48.23        17.26        15.65         3.22         2.56 
TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E1 
       38.47        67.86        47.41        16.27         4.41        15.68 
TCGA-BH-A0E2 TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EA TCGA-BH-A0EE TCGA-BH-A0EI 
       14.30        44.81        46.19        32.58        31.00        24.43 
TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0HB TCGA-BH-A0HI 
       15.16        37.78        35.51        24.56        26.50        20.38 
TCGA-BH-A0HK TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW 
        5.85         2.50        13.61        36.85        12.89        51.32 
TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0RX TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 
       27.25        50.79         5.59        24.95        42.35        44.81 
TCGA-BH-A0WA TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18L 
       23.05         8.81         2.01         7.23        20.12        26.66 
TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18R TCGA-BH-A18S TCGA-BH-A1EN 
       72.56        37.74        30.28        37.55        66.05        69.93 
TCGA-BH-A1EO TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EW TCGA-BH-A1EX TCGA-BH-A1EY 
       91.99        82.85        42.28        55.69        49.58        17.69 
TCGA-BH-A1F0 TCGA-BH-A1F2 TCGA-BH-A1F5 TCGA-BH-A1F6 TCGA-BH-A1FB TCGA-BH-A1FC 
       25.81        31.53        89.16        97.48       120.62       114.15 
TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FR TCGA-BH-A201 
      122.89        36.92        63.35        55.00       144.59        28.14 
TCGA-BH-A202 TCGA-BH-A203 TCGA-BH-A204 TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 
       26.14        38.60        83.31        10.65         6.44        20.12 
TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-BH-A6R8 TCGA-BH-A6R9 
      109.28         8.94        18.64        23.51         9.63         5.26 
TCGA-BH-A8FY TCGA-BH-A8FZ TCGA-BH-A8G0 TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12Q 
        9.70        18.87        21.76        11.77        11.77        12.66 
TCGA-C8-A12U TCGA-C8-A12V TCGA-C8-A12Z TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A135 
       12.66        12.66         0.39         1.87         1.12         1.05 
TCGA-C8-A137 TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HJ 
        4.11        12.33        10.92        11.34        11.28         0.16 
TCGA-C8-A1HK TCGA-C8-A1HL TCGA-C8-A1HM TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A26Y 
       12.03        10.42         2.30         0.30         0.23         0.43 
TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A27B 
        9.67         9.53         0.03         9.50        12.20         0.99 
TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-C8-A8HP TCGA-C8-A8HQ TCGA-C8-A9FZ TCGA-D8-A13Y 
        0.03         0.23        13.02        12.49        19.46        11.90 
TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A146 TCGA-D8-A147 TCGA-D8-A1J8 
       13.25        20.58        13.97        21.14        19.20        14.17 
TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JF TCGA-D8-A1JG 
       16.50        18.71        18.15        18.90        12.03        12.03 
TCGA-D8-A1JH TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1JP TCGA-D8-A1JS 
       14.01        20.09        19.40        20.38        21.01        12.20 
TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XB 
       13.32        14.70        16.73        25.74        23.90        18.15 
TCGA-D8-A1XC TCGA-D8-A1XF TCGA-D8-A1XG TCGA-D8-A1XJ TCGA-D8-A1XL TCGA-D8-A1XM 
       12.39        15.22        14.73        21.83        19.92        17.69 
TCGA-D8-A1XO TCGA-D8-A1XQ TCGA-D8-A1XR TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1XV 
       15.55        16.41        15.85         6.35        12.99        15.16 
TCGA-D8-A1XW TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 TCGA-D8-A27E 
       12.66        15.32        15.52         9.93        14.24        17.42 
TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27M 
       13.45        13.05        14.43         9.44        16.41        13.48 
TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27T TCGA-D8-A27V TCGA-D8-A3Z5 TCGA-D8-A3Z6 
        4.80         0.76        13.08        12.53        33.37        18.51 
TCGA-D8-A4Z1 TCGA-D8-A73U TCGA-D8-A73W TCGA-D8-A73X TCGA-E2-A105 TCGA-E2-A107 
       21.67        16.18         8.02        12.10        43.00        34.42 
TCGA-E2-A108 TCGA-E2-A10B TCGA-E2-A10C TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N 
       27.52        37.51        40.11        28.44        28.87        47.15 
TCGA-E2-A14Q TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14Y 
       38.24        33.17        33.30        43.33        34.26        28.60 
TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A153 TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A158 
       25.41        27.12        23.24        21.04        23.87        14.79 
TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15I TCGA-E2-A15J 
       22.82        17.29        18.21        12.92        17.42        19.40 
TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15O TCGA-E2-A15P TCGA-E2-A15R 
        9.04        20.58        11.05        13.02        19.56        17.06 
TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 
       14.07        14.99        53.62        53.03        33.01        32.35 
TCGA-E2-A1B6 TCGA-E2-A1BC TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IG 
       28.50        16.47        17.10        38.30        37.41        32.78 
TCGA-E2-A1IH TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IU 
       33.73        28.44        22.65         3.88        22.19        11.08 
TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L8 TCGA-E2-A1L9 TCGA-E2-A1LA TCGA-E2-A1LE 
       54.18        27.42        39.62        19.66        24.59        28.90 
TCGA-E2-A1LG TCGA-E2-A1LH TCGA-E2-A1LL TCGA-E2-A2P5 TCGA-E2-A2P6 TCGA-E2-A3DX 
       18.87       106.75        43.04        16.93         5.52        15.72 
TCGA-E2-A570 TCGA-E2-A574 TCGA-E2-A576 TCGA-E2-A9RU TCGA-E9-A1N3 TCGA-E9-A1N5 
       30.61        26.56        34.29        12.85        34.82        36.82 
TCGA-E9-A1N6 TCGA-E9-A1N8 TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NG 
       13.48        12.00        39.55        12.59        35.77        25.84 
TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1RA 
       28.27        34.95         2.56         6.12         3.02        32.09 
TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RI TCGA-E9-A226 TCGA-E9-A227 
        1.12        34.65         6.58        35.64        34.13        32.05 
TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A22G 
       12.53        13.32        39.09        41.03        12.89        23.51 
TCGA-E9-A22H TCGA-E9-A244 TCGA-E9-A247 TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A 
       20.71         0.69        27.22         1.94         7.13        24.56 
TCGA-E9-A2JS TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3QA TCGA-E9-A3X8 
       29.72         0.76        26.07        18.41        30.18        15.72 
TCGA-E9-A54X TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A6HE TCGA-EW-A1IW 
       12.33        23.84        14.70         0.79        15.39        12.20 
TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1J3 
       39.72         8.48        18.21        18.90        13.25        16.57 
TCGA-EW-A1J5 TCGA-EW-A1OX TCGA-EW-A1OZ TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P4 
       15.68        29.95        40.41        41.13        39.78        29.82 
TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A1PE 
       18.48        30.08        19.99         6.15        13.94        10.52 
TCGA-EW-A1PF TCGA-EW-A1PG TCGA-EW-A2FW TCGA-GI-A2C8 TCGA-GM-A2D9 TCGA-GM-A2DA 
       14.43        34.55        22.09         7.40        59.57       216.76 
TCGA-GM-A2DC TCGA-GM-A2DD TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM 
       83.34        75.02        85.15        86.96       115.69       106.06 
TCGA-GM-A2DN TCGA-GM-A2DO TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XL 
      101.62        85.35       110.50        38.20        43.73        69.30 
TCGA-GM-A3XN TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2NL TCGA-HN-A2OB TCGA-JL-A3YW 
       66.38        13.55        18.12         2.60        62.43        11.84 
TCGA-LD-A66U TCGA-LD-A74U TCGA-LD-A7W5 TCGA-LD-A7W6 TCGA-LD-A9QF TCGA-LL-A440 
       21.24        13.22         7.10        13.28        10.62        24.95 
TCGA-LL-A442 TCGA-LL-A50Y TCGA-LL-A5YL TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LL-A6FP 
       10.95        25.05        17.06        14.70        14.47        22.26 
TCGA-LL-A73Y TCGA-LL-A73Z TCGA-LL-A740 TCGA-LL-A8F5 TCGA-LL-A9Q3 TCGA-LQ-A4E4 
       15.68         7.46        14.50        14.73        14.07        27.91 
TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RU 
       22.39         2.10        58.52        31.99        58.62        40.08 
TCGA-OL-A5RV TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J 
       34.92        28.87        24.72        26.70        23.47        65.62 
TCGA-OL-A66K TCGA-OL-A66L TCGA-OL-A66O TCGA-OL-A6VO TCGA-OL-A6VQ TCGA-OL-A6VR 
       41.92        42.77        17.36        28.21        19.73        40.11 
TCGA-OL-A97C TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE TCGA-PL-A8LX TCGA-PL-A8LY 
        8.91        47.01        64.21        86.96         0.16         0.26 
TCGA-PL-A8LZ TCGA-S3-A6ZG TCGA-S3-AA0Z TCGA-S3-AA10 TCGA-S3-AA11 TCGA-S3-AA12 
        9.93        13.12        16.80        15.39        13.84        15.35 
TCGA-S3-AA15 TCGA-S3-AA17 TCGA-UL-AAZ6 TCGA-UU-A93S TCGA-W8-A86G TCGA-WT-AB41 
       13.84        13.94        17.03         3.81        11.41        52.96 
TCGA-WT-AB44 TCGA-XX-A899 TCGA-XX-A89A TCGA-Z7-A8R5 TCGA-Z7-A8R6 
       29.03        15.35        16.04       108.07       107.05 

  DEL PEAK 18(9Q21.11) MUTATED DEL PEAK 18(9Q21.11) WILD-TYPE 
                          0.03                           0.03 
  DEL PEAK 18(9Q21.11) MUTATED DEL PEAK 18(9Q21.11) WILD-TYPE 
                        211.56                         234.28 
  DEL PEAK 18(9Q21.11) MUTATED DEL PEAK 18(9Q21.11) WILD-TYPE 
                         25.02                          24.39 
[1] "0.0 - 211.6 (25.0)" "0.0 - 234.3 (24.4)"
[1] "hr=" "1.2"
D47V2, continuous
                                vv
clus                             STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  DEL PEAK 18(9Q21.11) MUTATED        24       17        1        0       101
  DEL PEAK 18(9Q21.11) WILD-TYPE      65       64        7        3       252
                                vv
clus                             STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  DEL PEAK 18(9Q21.11) MUTATED          57         1         46         12
  DEL PEAK 18(9Q21.11) WILD-TYPE       188         1        104         17
                                vv
clus                             STAGE IIIC STAGE IV STAGE TIS STAGE X
  DEL PEAK 18(9Q21.11) MUTATED           20        8         0       4
  DEL PEAK 18(9Q21.11) WILD-TYPE         43       12         1       9
D47V3, multiclass
            clus
vv           DEL PEAK 18(9Q21.11) MUTATED DEL PEAK 18(9Q21.11) WILD-TYPE
  STAGE I                              24                             65
  STAGE IA                             17                             64
  STAGE IB                              1                              7
  STAGE II                              0                              3
  STAGE IIA                           101                            252
  STAGE IIB                            57                            188
  STAGE III                             1                              1
  STAGE IIIA                           46                            104
  STAGE IIIB                           12                             17
  STAGE IIIC                           20                             43
  STAGE IV                              8                             12
  STAGE TIS                             0                              1
  STAGE X                               4                              9
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              T1  T2  T3  T4
  DEL PEAK 18(9Q21.11) MUTATED    62 176  36  16
  DEL PEAK 18(9Q21.11) WILD-TYPE 210 440  94  24
D47V4, multiclass
    clus
vv   DEL PEAK 18(9Q21.11) MUTATED DEL PEAK 18(9Q21.11) WILD-TYPE
  T1                           62                            210
  T2                          176                            440
  T3                           36                             94
  T4                           16                             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              N0  N1  N2  N3
  DEL PEAK 18(9Q21.11) MUTATED   139  86  39  24
  DEL PEAK 18(9Q21.11) WILD-TYPE 362 264  78  51
D47V5, multiclass
    clus
vv   DEL PEAK 18(9Q21.11) MUTATED DEL PEAK 18(9Q21.11) WILD-TYPE
  N0                          139                            362
  N1                           86                            264
  N2                           39                             78
  N3                           24                             51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D47V6, binary
                                cls
clus                               0   1
  DEL PEAK 18(9Q21.11) MUTATED   242   8
  DEL PEAK 18(9Q21.11) WILD-TYPE 637  13
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 18(9Q21.11) MUTATED    242    8
  DEL PEAK 18(9Q21.11) WILD-TYPE  637   13
   clus
vv  DEL PEAK 18(9Q21.11) MUTATED DEL PEAK 18(9Q21.11) WILD-TYPE
  0                          242                            637
  1                            8                             13
[1] 2 2
[1] FALSE
D47V7, binary
                                cls
clus                               0   1
  DEL PEAK 18(9Q21.11) MUTATED   286   6
  DEL PEAK 18(9Q21.11) WILD-TYPE 765   5
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 18(9Q21.11) MUTATED    286    6
  DEL PEAK 18(9Q21.11) WILD-TYPE  765    5
        clus
vv       DEL PEAK 18(9Q21.11) MUTATED DEL PEAK 18(9Q21.11) WILD-TYPE
  FEMALE                          286                            765
  MALE                              6                              5
[1] 2 2
[1] FALSE
                                vv
clus                             INFILTRATING CARCINOMA NOS
  DEL PEAK 18(9Q21.11) MUTATED                            0
  DEL PEAK 18(9Q21.11) WILD-TYPE                          1
                                vv
clus                             INFILTRATING DUCTAL CARCINOMA
  DEL PEAK 18(9Q21.11) MUTATED                             243
  DEL PEAK 18(9Q21.11) WILD-TYPE                           520
                                vv
clus                             INFILTRATING LOBULAR CARCINOMA
  DEL PEAK 18(9Q21.11) MUTATED                               23
  DEL PEAK 18(9Q21.11) WILD-TYPE                            169
                                vv
clus                             MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  DEL PEAK 18(9Q21.11) MUTATED                     2                     1
  DEL PEAK 18(9Q21.11) WILD-TYPE                   4                     3
                                vv
clus                             MIXED HISTOLOGY (PLEASE SPECIFY)
  DEL PEAK 18(9Q21.11) MUTATED                                 10
  DEL PEAK 18(9Q21.11) WILD-TYPE                               20
                                vv
clus                             MUCINOUS CARCINOMA OTHER  SPECIFY
  DEL PEAK 18(9Q21.11) MUTATED                    3             10
  DEL PEAK 18(9Q21.11) WILD-TYPE                 14             38
D47V8, multiclass
                                  clus
vv                                 DEL PEAK 18(9Q21.11) MUTATED
  INFILTRATING CARCINOMA NOS                                  0
  INFILTRATING DUCTAL CARCINOMA                             243
  INFILTRATING LOBULAR CARCINOMA                             23
  MEDULLARY CARCINOMA                                         2
  METAPLASTIC CARCINOMA                                       1
  MIXED HISTOLOGY (PLEASE SPECIFY)                           10
  MUCINOUS CARCINOMA                                          3
  OTHER  SPECIFY                                             10
                                  clus
vv                                 DEL PEAK 18(9Q21.11) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                    1
  INFILTRATING DUCTAL CARCINOMA                               520
  INFILTRATING LOBULAR CARCINOMA                              169
  MEDULLARY CARCINOMA                                           4
  METAPLASTIC CARCINOMA                                         3
  MIXED HISTOLOGY (PLEASE SPECIFY)                             20
  MUCINOUS CARCINOMA                                           14
  OTHER  SPECIFY                                               38
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D47V9, binary
                                cls
clus                               0   1
  DEL PEAK 18(9Q21.11) MUTATED    93 199
  DEL PEAK 18(9Q21.11) WILD-TYPE 195 575
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 18(9Q21.11) MUTATED     93  199
  DEL PEAK 18(9Q21.11) WILD-TYPE  195  575
     clus
vv    DEL PEAK 18(9Q21.11) MUTATED DEL PEAK 18(9Q21.11) WILD-TYPE
  NO                            93                            195
  YES                          199                            575
[1] 2 2
[1] FALSE
D47V10, continuous
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 18(9Q21.11) MUTATED                                  1    16
  DEL PEAK 18(9Q21.11) WILD-TYPE                                0    44
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 18(9Q21.11) MUTATED                          53   187
  DEL PEAK 18(9Q21.11) WILD-TYPE                       117   549
D47V11, multiclass
                                  clus
vv                                 DEL PEAK 18(9Q21.11) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            1
  ASIAN                                                      16
  BLACK OR AFRICAN AMERICAN                                  53
  WHITE                                                     187
                                  clus
vv                                 DEL PEAK 18(9Q21.11) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              0
  ASIAN                                                        44
  BLACK OR AFRICAN AMERICAN                                   117
  WHITE                                                       549
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D47V12, binary
                                cls
clus                               0   1
  DEL PEAK 18(9Q21.11) MUTATED    13 226
  DEL PEAK 18(9Q21.11) WILD-TYPE  25 632
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 18(9Q21.11) MUTATED     13  226
  DEL PEAK 18(9Q21.11) WILD-TYPE   25  632
                        clus
vv                       DEL PEAK 18(9Q21.11) MUTATED
  HISPANIC OR LATINO                               13
  NOT HISPANIC OR LATINO                          226
                        clus
vv                       DEL PEAK 18(9Q21.11) WILD-TYPE
  HISPANIC OR LATINO                                 25
  NOT HISPANIC OR LATINO                            632
[1] 2 2
[1] FALSE

Clustering(48) Variable = DEL PEAK 19(9Q34.2) MUTATION ANALYSIS
D48V1, survival
                               sevent
clus2                             0   1
  DEL PEAK 19(9Q34.2) MUTATED   258  32
  DEL PEAK 19(9Q34.2) WILD-TYPE 658  96
  DEL PEAK 19(9Q34.2) MUTATED DEL PEAK 19(9Q34.2) WILD-TYPE 
                          290                           754 
  DEL PEAK 19(9Q34.2) MUTATED DEL PEAK 19(9Q34.2) WILD-TYPE 
                           32                            96 
$`DEL PEAK 19(9Q34.2) MUTATED`
TCGA-3C-AAAU TCGA-A1-A0SJ TCGA-A1-A0SM TCGA-A1-A0SO TCGA-A2-A04P TCGA-A2-A04R 
      129.14        13.68         7.96        28.01        18.02       121.94 
TCGA-A2-A04U TCGA-A2-A0CL TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0D1 TCGA-A2-A0EO 
       87.25        99.12        75.25         5.19        34.55        80.28 
TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0SX TCGA-A2-A0T0 TCGA-A2-A0YE TCGA-A2-A0YH 
       35.05        34.29        50.43        17.52        18.21        21.67 
TCGA-A2-A0YT TCGA-A2-A1FX TCGA-A2-A1G1 TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XX 
       23.77        60.72        19.20        33.93        83.01        47.31 
TCGA-A2-A3XY TCGA-A2-A3Y0 TCGA-A2-A4S3 TCGA-A7-A0CE TCGA-A7-A0CJ TCGA-A7-A0D9 
       34.98        38.37        21.90        35.31        30.61        37.45 
TCGA-A7-A0DA TCGA-A7-A0DC TCGA-A7-A13D TCGA-A7-A13F TCGA-A7-A26I TCGA-A7-A4SB 
       35.67        29.79        31.73        25.15        21.73        13.74 
TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF TCGA-A7-A6VV TCGA-A7-A6VW TCGA-A7-A6VX 
       14.50        21.17        17.92        10.29         9.37        10.42 
TCGA-A8-A06O TCGA-A8-A06Q TCGA-A8-A06T TCGA-A8-A06X TCGA-A8-A06Z TCGA-A8-A079 
       13.02         1.02        53.06        31.00         1.02         9.01 
TCGA-A8-A07B TCGA-A8-A07G TCGA-A8-A07R TCGA-A8-A07U TCGA-A8-A08F TCGA-A8-A08I 
       43.00        18.97         8.98        24.99        33.01        12.00 
TCGA-A8-A08O TCGA-A8-A08P TCGA-A8-A08R TCGA-A8-A09B TCGA-A8-A09C TCGA-A8-A09E 
       31.00        31.00         0.99        12.00         1.02        49.05 
TCGA-A8-A09I TCGA-A8-A09M TCGA-A8-A09N TCGA-A8-A09Q TCGA-A8-A09T TCGA-A8-A0A2 
       45.07        33.07         1.02        25.02        19.04        19.04 
TCGA-A8-A0A6 TCGA-A8-A0A7 TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-AC-A2BK TCGA-AC-A2BM 
       21.04         0.99        27.02        17.03        38.53        99.35 
TCGA-AC-A2FF TCGA-AC-A2QH TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3W5 TCGA-AC-A62V 
       55.43        33.04         0.92         2.27        16.57        11.44 
TCGA-AC-A6IW TCGA-AC-A7VC TCGA-AC-A8OQ TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A041 
       13.58         0.03         1.12         0.33         0.33         0.23 
TCGA-AN-A049 TCGA-AN-A04C TCGA-AN-A04D TCGA-AN-A0AK TCGA-AN-A0AL TCGA-AN-A0AM 
        0.62         1.78         1.71         7.36         6.51         0.16 
TCGA-AN-A0AT TCGA-AN-A0FJ TCGA-AN-A0FW TCGA-AN-A0FZ TCGA-AN-A0XN TCGA-AN-A0XS 
        0.33         7.96         0.36         0.33         0.33         0.33 
TCGA-AN-A0XU TCGA-AN-A0XV TCGA-AO-A03L TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03V 
        0.33         5.33        80.28        66.77        81.63        29.13 
TCGA-AO-A0J2 TCGA-AO-A0J4 TCGA-AO-A0J5 TCGA-AO-A0J6 TCGA-AO-A0JD TCGA-AO-A0JL 
       32.78        52.18        26.04        37.48        72.00        55.33 
TCGA-AO-A129 TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A1KQ TCGA-AO-A1KR TCGA-AO-A1KT 
      108.03        48.36        41.62        61.87        70.39        17.79 
TCGA-AQ-A04J TCGA-AQ-A0Y5 TCGA-AQ-A1H2 TCGA-AQ-A54N TCGA-AQ-A54O TCGA-AR-A0TP 
       26.93         5.65        15.62         2.56        32.91       111.32 
TCGA-AR-A0TS TCGA-AR-A0TY TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A0U3 TCGA-AR-A0U4 
       74.79        55.86        65.36       101.95       114.02        85.97 
TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AP TCGA-AR-A1AQ TCGA-AR-A1AW TCGA-AR-A1AY 
       75.55        61.84        39.98        43.07        63.62        33.73 
TCGA-AR-A24H TCGA-AR-A24K TCGA-AR-A24N TCGA-AR-A24S TCGA-AR-A24V TCGA-AR-A251 
      160.90        50.89        78.51        97.84        85.35        78.48 
TCGA-AR-A252 TCGA-AR-A256 TCGA-AR-A2LK TCGA-AR-A2LL TCGA-B6-A0IB TCGA-B6-A0IO 
       73.18        93.83        54.21        66.15       129.57       110.14 
TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RO TCGA-B6-A0RP TCGA-B6-A0WX TCGA-B6-A1KC 
      140.88       211.56       162.05       102.77        21.47        43.59 
TCGA-B6-A401 TCGA-B6-A402 TCGA-B6-A408 TCGA-BH-A0AU TCGA-BH-A0B3 TCGA-BH-A0B5 
       85.35        74.99        68.12        24.53        39.55        48.36 
TCGA-BH-A0B7 TCGA-BH-A0B9 TCGA-BH-A0BF TCGA-BH-A0BG TCGA-BH-A0BL TCGA-BH-A0BT 
       56.98        51.68        25.71        24.85        44.05        45.57 
TCGA-BH-A0BV TCGA-BH-A0C3 TCGA-BH-A0E0 TCGA-BH-A0E6 TCGA-BH-A0EB TCGA-BH-A0GY 
       49.94        48.13         4.41         9.63        24.49        30.35 
TCGA-BH-A0GZ TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0W3 TCGA-BH-A0WA TCGA-BH-A18K 
       10.78        41.00        52.96        23.93        23.05        90.84 
TCGA-BH-A18Q TCGA-BH-A18S TCGA-BH-A18T TCGA-BH-A1EN TCGA-BH-A1ES TCGA-BH-A1F8 
       55.63        66.05         7.36        69.93       113.82        24.66 
TCGA-BH-A1FD TCGA-BH-A1FM TCGA-BH-A1FN TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A42T 
       33.17        45.63        72.07        57.83       130.16        10.52 
TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-BH-AB28 TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12W 
       18.64        23.51         9.44        12.66        11.77        12.66 
TCGA-C8-A12X TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A134 TCGA-C8-A138 TCGA-C8-A1HJ 
       12.66         3.16         2.24         1.12         4.08         0.16 
TCGA-C8-A26X TCGA-C8-A27B TCGA-C8-A8HR TCGA-D8-A13Y TCGA-D8-A13Z TCGA-D8-A140 
        0.36         0.99        13.41        11.90        20.88        13.25 
TCGA-D8-A143 TCGA-D8-A145 TCGA-D8-A147 TCGA-D8-A1J9 TCGA-D8-A1JC TCGA-D8-A1JF 
       14.17        13.48        19.20        17.49        15.78        12.03 
TCGA-D8-A1JJ TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1XA TCGA-D8-A1XD TCGA-D8-A1XQ 
       20.09        18.58        17.79        27.58        17.16        16.41 
TCGA-D8-A1XS TCGA-D8-A1XY TCGA-D8-A1Y3 TCGA-D8-A27F TCGA-D8-A27H TCGA-D8-A27R 
       16.31        16.54        14.14        16.04        13.05        10.09 
TCGA-D8-A27W TCGA-E2-A109 TCGA-E2-A14O TCGA-E2-A14R TCGA-E2-A14W TCGA-E2-A14X 
       12.26        46.59        44.68        38.60        32.02        31.96 
TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A154 TCGA-E2-A159 TCGA-E2-A15A TCGA-E2-A15F 
       18.51        25.41        19.43        25.05        23.34        21.63 
TCGA-E2-A15S TCGA-E2-A1AZ TCGA-E2-A1II TCGA-E2-A1L7 TCGA-E2-A1LH TCGA-E2-A1LI 
       14.07        60.53        33.70        27.42       106.75       102.61 
TCGA-E2-A1LK TCGA-E2-A573 TCGA-E2-A574 TCGA-E9-A1N8 TCGA-E9-A1NC TCGA-E9-A1NI 
        8.75        34.92        26.56        12.00        39.55         9.86 
TCGA-E9-A1QZ TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RG TCGA-E9-A1RH TCGA-E9-A22B 
       11.90         2.76        21.21        21.27        34.59        22.75 
TCGA-E9-A244 TCGA-E9-A3QA TCGA-E9-A5UP TCGA-EW-A1J6 TCGA-EW-A1OV TCGA-EW-A1OW 
        0.69        30.18        14.40        28.77        25.94        22.82 
TCGA-EW-A1OY TCGA-EW-A1P3 TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A1P8 TCGA-EW-A1PD 
       29.85        52.96        29.82        23.11         7.86        13.94 
TCGA-EW-A1PH TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A3U0 TCGA-EW-A423 
       19.96        55.00        52.73        25.91        17.49        10.16 
TCGA-EW-A424 TCGA-GI-A2C9 TCGA-GM-A2DB TCGA-GM-A2DF TCGA-HN-A2NL TCGA-JL-A3YX 
       23.51       109.87        79.10        70.85         2.60        11.57 
TCGA-LL-A441 TCGA-LL-A5YM TCGA-LL-A5YP TCGA-LL-A6FQ TCGA-LL-A6FR TCGA-LL-A7SZ 
       11.44        15.32        14.79         2.63        16.08        14.70 
TCGA-LL-A7T0 TCGA-OL-A5RW TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66N TCGA-OL-A66P 
       12.36        36.36        22.32        20.38        26.04        14.07 
TCGA-S3-A6ZG TCGA-S3-A6ZH 
       13.12        16.93 

$`DEL PEAK 19(9Q34.2) WILD-TYPE`
TCGA-3C-AALI TCGA-3C-AALJ TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT0 TCGA-5L-AAT1 
      131.67        42.81        40.14        11.44        48.56        48.36 
TCGA-5T-A9QA TCGA-A1-A0SB TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG 
        9.96         8.52        14.37        43.43        48.10        14.27 
TCGA-A1-A0SH TCGA-A1-A0SI TCGA-A1-A0SK TCGA-A1-A0SN TCGA-A1-A0SP TCGA-A1-A0SQ 
       47.24        20.88        31.79        39.32        19.20        18.21 
TCGA-A2-A04N TCGA-A2-A04Q TCGA-A2-A04T TCGA-A2-A04V TCGA-A2-A04W TCGA-A2-A04X 
      104.81        78.41        73.84        63.12       101.98        55.43 
TCGA-A2-A04Y TCGA-A2-A0CK TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CQ 
       36.13       136.73        24.79       114.81        92.48        88.60 
TCGA-A2-A0CR TCGA-A2-A0CS TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0CX TCGA-A2-A0D0 
      107.93        75.55        98.99       107.93        56.81        67.33 
TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0D4 TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EP 
       33.76        61.58        25.22       101.72       134.40       107.61 
TCGA-A2-A0EQ TCGA-A2-A0ER TCGA-A2-A0ES TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX 
       79.76        74.40        72.00        31.82        61.94        24.72 
TCGA-A2-A0EY TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0SY 
       63.29        99.19        54.64        27.12        44.88        44.28 
TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T4 TCGA-A2-A0T5 TCGA-A2-A0T6 
       17.13         8.38        49.84        20.52        17.46        18.90 
TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YF TCGA-A2-A0YG TCGA-A2-A0YI 
       20.75        32.55        25.28        50.47        21.90        49.48 
TCGA-A2-A0YJ TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A0YM TCGA-A2-A1FV TCGA-A2-A1FW 
       18.61        19.33        48.46        31.73        23.47        17.36 
TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G4 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25A 
       22.45        20.25        19.56        16.47        52.47       107.70 
TCGA-A2-A25B TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC 
       42.44        17.19        18.15       105.34        10.59        20.88 
TCGA-A2-A3KD TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XZ TCGA-A2-A4RW 
       39.65        29.98        32.75        49.48        50.37         7.30 
TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A7-A0CD 
       24.39        21.30        23.21        26.96        21.14        38.30 
TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0DB TCGA-A7-A13E TCGA-A7-A13G TCGA-A7-A13H 
       34.29        35.47        33.11        20.19        23.61        29.56 
TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26G TCGA-A7-A26H TCGA-A7-A26J TCGA-A7-A2KD 
       31.36        24.26        23.74        23.80        20.61        22.32 
TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3J1 TCGA-A7-A3RF TCGA-A7-A425 
       11.34        10.59        10.29        11.28        13.41        14.70 
TCGA-A7-A426 TCGA-A7-A4SA TCGA-A7-A56D TCGA-A7-A5ZV TCGA-A7-A5ZW TCGA-A7-A5ZX 
       11.97        14.93        14.73        12.10        10.72        11.05 
TCGA-A7-A6VY TCGA-A8-A06P TCGA-A8-A06R TCGA-A8-A06U TCGA-A8-A06Y TCGA-A8-A075 
        8.75        13.02        17.98        29.03        26.01        17.03 
TCGA-A8-A076 TCGA-A8-A07E TCGA-A8-A07F TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07L 
       53.98        19.99        18.97        14.01        12.00        32.05 
TCGA-A8-A07O TCGA-A8-A07P TCGA-A8-A07S TCGA-A8-A07W TCGA-A8-A07Z TCGA-A8-A082 
        9.99        10.98         7.99         9.99        45.07        18.05 
TCGA-A8-A084 TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08B TCGA-A8-A08C 
       15.06        36.95        13.02         0.99        38.01        28.96 
TCGA-A8-A08G TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08S TCGA-A8-A08T TCGA-A8-A08X 
       19.96        37.05         9.99        33.01       112.08        43.00 
TCGA-A8-A08Z TCGA-A8-A091 TCGA-A8-A092 TCGA-A8-A093 TCGA-A8-A095 TCGA-A8-A097 
       40.01        33.01        30.97        17.95        41.98        12.00 
TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09D TCGA-A8-A09K TCGA-A8-A09R TCGA-A8-A09V 
        9.99         9.99        50.04        29.98         8.98        15.02 
TCGA-A8-A09W TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0A4 TCGA-A8-A0AD TCGA-AC-A23C 
        0.99        14.01        12.00        13.02        38.04         0.95 
TCGA-AC-A23E TCGA-AC-A23G TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2FB TCGA-AC-A2FG 
        2.37        10.85         5.72         1.48        40.57        36.99 
TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A3BB TCGA-AC-A3HN TCGA-AC-A3OD 
       38.79        26.04        50.70        32.45        16.31        14.83 
TCGA-AC-A3QP TCGA-AC-A3TN TCGA-AC-A3W6 TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A5XS 
       22.19        14.99        19.79        23.24        24.79         1.55 
TCGA-AC-A62X TCGA-AC-A62Y TCGA-AC-A6IV TCGA-AC-A6IX TCGA-AC-A6NO TCGA-AC-A7VB 
       13.71        17.42        18.67        12.26         1.68         8.22 
TCGA-AC-A8OP TCGA-AC-A8OR TCGA-AC-A8OS TCGA-AN-A046 TCGA-AN-A04A TCGA-AN-A0AJ 
       20.19         1.32         2.30         0.33         2.96         9.96 
TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FK TCGA-AN-A0FL 
        0.33         0.33         6.44         5.65         7.00         7.59 
TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FX TCGA-AN-A0FY 
        7.17         6.28         7.04         0.33         0.33         0.33 
TCGA-AN-A0XL TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XT TCGA-AN-A0XW 
        0.33        12.33         0.30         0.33         0.33         5.59 
TCGA-AO-A03M TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A0J3 
       61.35        95.70        68.75        47.87        58.95        21.40 
TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JC 
       20.32        22.36        53.03        21.53        50.70        50.86 
TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JG TCGA-AO-A0JI TCGA-AO-A0JJ TCGA-AO-A0JM 
       76.77        21.37        26.24        50.24        62.04        71.80 
TCGA-AO-A124 TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 TCGA-AO-A12A TCGA-AO-A12B 
      102.58        99.25       108.72       106.78        90.58        98.27 
TCGA-AO-A12D TCGA-AO-A12E TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KS 
       64.04        57.30        28.37        14.73        82.62         0.53 
TCGA-AQ-A04H TCGA-AQ-A04L TCGA-AQ-A1H3 TCGA-AQ-A7U7 TCGA-AR-A0TQ TCGA-AR-A0TR 
       24.79       130.09        32.52        19.20        73.64         5.26 
TCGA-AR-A0TT TCGA-AR-A0TV TCGA-AR-A0TW TCGA-AR-A0TX TCGA-AR-A0TZ TCGA-AR-A0U2 
       86.66        42.35        98.93        64.83       107.24        83.87 
TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AM TCGA-AR-A1AN TCGA-AR-A1AO 
       52.77        51.25        48.82        76.11        43.73        43.56 
TCGA-AR-A1AR TCGA-AR-A1AS TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A1AX TCGA-AR-A24L 
       17.23        37.81        76.21        61.28        62.14        94.22 
TCGA-AR-A24M TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24Q TCGA-AR-A24R TCGA-AR-A24T 
       96.89        84.20         2.76       104.28        87.22        76.01 
TCGA-AR-A24U TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A254 
       53.36        50.96        83.77        79.00        89.00        72.76 
TCGA-AR-A255 TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LM TCGA-AR-A2LN 
       58.92       143.21        20.25        62.86        52.11        38.17 
TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A2LR TCGA-AR-A5QM TCGA-AR-A5QN TCGA-AR-A5QP 
       39.39        40.54        20.38        54.74        16.04        20.45 
TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0I9 TCGA-B6-A0IA 
       10.59        77.62       143.38       149.59        12.13       220.90 
TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IK 
       50.70        65.72       146.50       112.37       176.98        18.77 
TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IP TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RI 
      126.12        84.59       110.93        68.45       189.01       234.28 
TCGA-B6-A0RL TCGA-B6-A0RM TCGA-B6-A0RN TCGA-B6-A0RQ TCGA-B6-A0RS TCGA-B6-A0RT 
       81.17        78.02       172.96       140.48       100.70        89.46 
TCGA-B6-A0RU TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0WW 
      131.21       157.41        97.48       188.68        79.63        18.35 
TCGA-B6-A0WY TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 
      113.79       129.57       129.70       186.48        28.27        68.94 
TCGA-B6-A0X7 TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A40B 
       58.88       101.52        73.51       139.17       170.17       103.63 
TCGA-B6-A40C TCGA-BH-A0AV TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0AZ TCGA-BH-A0B0 
       71.15        59.84        20.45        25.55        28.50        46.95 
TCGA-BH-A0B2 TCGA-BH-A0B4 TCGA-BH-A0B6 TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BD 
       40.83        39.16        56.94        37.22        32.02        18.21 
TCGA-BH-A0BJ TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BP TCGA-BH-A0BQ TCGA-BH-A0BR 
       21.70        61.68        35.67        48.69        27.19        53.69 
TCGA-BH-A0BS TCGA-BH-A0BW TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0C7 
       53.95        11.67        49.05        41.75        44.02        42.90 
TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DK 
       45.83        31.17        23.44        38.01        22.13        13.91 
TCGA-BH-A0DL TCGA-BH-A0DO TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DT 
       48.23        17.26        15.65         3.22         2.56        38.47 
TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E7 
       67.86        47.41        16.27        15.68        14.30        44.81 
TCGA-BH-A0E9 TCGA-BH-A0EA TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0H0 TCGA-BH-A0H3 
       46.19        32.58        31.00        24.43        15.16        37.78 
TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H7 TCGA-BH-A0HB TCGA-BH-A0HI TCGA-BH-A0HK 
       35.51        24.56        23.08        26.50        20.38         5.85 
TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HX 
        2.50        13.61        36.85        12.89        51.32        27.25 
TCGA-BH-A0HY TCGA-BH-A0RX TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A18F 
       50.79         5.59        24.95        42.35        44.81         8.81 
TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18L TCGA-BH-A18M TCGA-BH-A18N 
        2.01         7.23        20.12        26.66        72.56        37.74 
TCGA-BH-A18P TCGA-BH-A18R TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1EO TCGA-BH-A1ET 
       30.28        37.55        51.39        51.16        91.99        82.85 
TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1EX TCGA-BH-A1EY TCGA-BH-A1F0 
       42.28        12.00        55.69        49.58        17.69        25.81 
TCGA-BH-A1F2 TCGA-BH-A1F5 TCGA-BH-A1F6 TCGA-BH-A1FB TCGA-BH-A1FC TCGA-BH-A1FE 
       31.53        89.16        97.48       120.62       114.15        74.73 
TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FR TCGA-BH-A1FU 
      122.89        36.92        63.35        55.00       144.59        72.07 
TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A203 TCGA-BH-A204 TCGA-BH-A28O TCGA-BH-A28Q 
       28.14        26.14        38.60        83.31        10.65         6.44 
TCGA-BH-A2L8 TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A6R8 TCGA-BH-A6R9 TCGA-BH-A8FY 
       20.12       109.28         8.94         9.63         5.26         9.70 
TCGA-BH-A8FZ TCGA-BH-A8G0 TCGA-C8-A12L TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12Q 
       18.87        21.76        11.93        11.77        11.77        12.66 
TCGA-C8-A12U TCGA-C8-A12V TCGA-C8-A12Z TCGA-C8-A132 TCGA-C8-A135 TCGA-C8-A137 
       12.66        12.66         0.39         1.87         1.05         4.11 
TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HK TCGA-C8-A1HL 
       12.33        10.92        11.34        11.28        12.03        10.42 
TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A26Y TCGA-C8-A26Z 
        2.30         3.25         0.30         0.23         0.43         8.28 
TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A3M7 
        9.67         9.53         0.03         9.50        12.20         0.03 
TCGA-C8-A3M8 TCGA-C8-A8HP TCGA-C8-A8HQ TCGA-C8-A9FZ TCGA-D8-A141 TCGA-D8-A142 
        0.23        13.02        12.49        19.46        20.58        13.97 
TCGA-D8-A146 TCGA-D8-A1J8 TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JD TCGA-D8-A1JE 
       21.14        14.17        16.50        18.71        18.15        18.90 
TCGA-D8-A1JG TCGA-D8-A1JH TCGA-D8-A1JI TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JM 
       12.03        14.01        18.97        20.12        20.09        19.40 
TCGA-D8-A1JN TCGA-D8-A1JP TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X7 
       20.38        21.01        12.20        13.32        14.70        16.73 
TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XF TCGA-D8-A1XG 
       25.74        23.90        18.15        12.39        15.22        14.73 
TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XR 
       21.83        14.50        19.92        17.69        15.55        15.85 
TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1XV TCGA-D8-A1XW TCGA-D8-A1XZ TCGA-D8-A1Y0 
        6.35        12.99        15.16        12.66        15.32        15.52 
TCGA-D8-A1Y1 TCGA-D8-A1Y2 TCGA-D8-A27E TCGA-D8-A27G TCGA-D8-A27I TCGA-D8-A27K 
        9.93        14.24        17.42        13.45        14.43         9.44 
TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27T TCGA-D8-A27V 
       16.41        13.48         4.80         0.76        13.08        12.53 
TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-D8-A73U TCGA-D8-A73W TCGA-D8-A73X 
       33.37        18.51        21.67        16.18         8.02        12.10 
TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10C 
       43.00        34.42        27.52        40.41        37.51        40.11 
TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14P TCGA-E2-A14Q TCGA-E2-A14S 
       28.44        28.87        47.15        40.96        38.24        33.17 
TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14Y TCGA-E2-A152 TCGA-E2-A153 
       33.30        43.33        34.26        28.60        27.12        23.24 
TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A158 TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15E 
       21.04        23.87        14.79        22.82        17.29        20.71 
TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L 
       18.21        12.92        17.42        19.40         9.04        20.58 
TCGA-E2-A15M TCGA-E2-A15O TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A15T TCGA-E2-A1B0 
       11.05        13.02        19.56        17.06        14.99        53.62 
TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BC TCGA-E2-A1BD 
       53.03        33.01        32.35        28.50        16.47        17.10 
TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1IH TCGA-E2-A1IJ TCGA-E2-A1IK 
       38.30        37.41        32.78        33.73        28.44        22.65 
TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IO TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L8 
        3.88        22.19        20.98        11.08        54.18        39.62 
TCGA-E2-A1L9 TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LG TCGA-E2-A1LL 
       19.66        24.59        40.47        28.90        18.87        43.04 
TCGA-E2-A2P5 TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A576 
       16.93         5.52        15.72         8.28        30.61        34.29 
TCGA-E2-A9RU TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N6 TCGA-E9-A1N9 
       12.85        34.82        32.88        36.82        13.48        13.12 
TCGA-E9-A1NA TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1R0 
       36.56        12.59        35.77        35.24        25.84        28.27 
TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1RA TCGA-E9-A1RB 
       34.95         2.56         6.12         3.02        32.09        32.09 
TCGA-E9-A1RC TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RI TCGA-E9-A226 
       40.24         1.12        34.65         6.58        35.64        34.13 
TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22D TCGA-E9-A22E 
       32.05        12.53        13.32        39.09        41.03        12.89 
TCGA-E9-A22G TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A247 TCGA-E9-A248 TCGA-E9-A249 
       23.51        20.71        17.06        27.22         1.94         7.13 
TCGA-E9-A24A TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 
       24.56         0.72        29.72         0.76        26.07        18.41 
TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UO 
       15.72        12.33        23.84        14.70         0.79        13.81 
TCGA-E9-A6HE TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 
       15.39        12.20        39.72         8.48        18.21        18.90 
TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J5 TCGA-EW-A1OX TCGA-EW-A1OZ TCGA-EW-A1P0 
       13.25        16.57        15.68        29.95        40.41        41.13 
TCGA-EW-A1P1 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1PA TCGA-EW-A1PB TCGA-EW-A1PC 
       39.78        18.48        30.08        18.90        19.99         6.15 
TCGA-EW-A1PE TCGA-EW-A1PF TCGA-EW-A1PG TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-GI-A2C8 
       10.52        14.43        34.55        22.09        34.03         7.40 
TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DC TCGA-GM-A2DD TCGA-GM-A2DH TCGA-GM-A2DI 
       59.57       216.76        83.34        75.02        72.10        85.15 
TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A2DO TCGA-GM-A3NW 
       86.96       115.69       106.06       101.62        85.35       110.50 
TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XL TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV 
       38.20        43.73        69.30        66.38        72.03        13.55 
TCGA-GM-A5PX TCGA-HN-A2OB TCGA-JL-A3YW TCGA-LD-A66U TCGA-LD-A74U TCGA-LD-A7W5 
       18.12        62.43        11.84        21.24        13.22         7.10 
TCGA-LD-A7W6 TCGA-LD-A9QF TCGA-LL-A440 TCGA-LL-A442 TCGA-LL-A50Y TCGA-LL-A5YL 
       13.28        10.62        24.95        10.95        25.05        17.06 
TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LL-A6FP TCGA-LL-A73Y TCGA-LL-A73Z TCGA-LL-A740 
       14.70        14.47        22.26        15.68         7.46        14.50 
TCGA-LL-A8F5 TCGA-LL-A9Q3 TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D6 
       14.73        14.07        27.91        22.39         2.10        36.30 
TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RU TCGA-OL-A5RV TCGA-OL-A5RX 
       58.52        31.99        58.62        40.08        34.92        28.87 
TCGA-OL-A5RY TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66K TCGA-OL-A66L 
       24.72        26.70        23.47        65.62        41.92        42.77 
TCGA-OL-A66O TCGA-OL-A6VO TCGA-OL-A6VQ TCGA-OL-A6VR TCGA-OL-A97C TCGA-PE-A5DC 
       17.36        28.21        19.73        40.11         8.91        47.01 
TCGA-PE-A5DD TCGA-PE-A5DE TCGA-PL-A8LX TCGA-PL-A8LY TCGA-PL-A8LZ TCGA-S3-A6ZF 
       64.21        86.96         0.16         0.26         9.93        16.50 
TCGA-S3-AA0Z TCGA-S3-AA10 TCGA-S3-AA11 TCGA-S3-AA12 TCGA-S3-AA14 TCGA-S3-AA15 
       16.80        15.39        13.84        15.35        14.96        13.84 
TCGA-S3-AA17 TCGA-UL-AAZ6 TCGA-UU-A93S TCGA-W8-A86G TCGA-WT-AB41 TCGA-WT-AB44 
       13.94        17.03         3.81        11.41        52.96        29.03 
TCGA-XX-A899 TCGA-XX-A89A TCGA-Z7-A8R5 TCGA-Z7-A8R6 
       15.35        16.04       108.07       107.05 

  DEL PEAK 19(9Q34.2) MUTATED DEL PEAK 19(9Q34.2) WILD-TYPE 
                         0.03                          0.03 
  DEL PEAK 19(9Q34.2) MUTATED DEL PEAK 19(9Q34.2) WILD-TYPE 
                       211.56                        234.28 
  DEL PEAK 19(9Q34.2) MUTATED DEL PEAK 19(9Q34.2) WILD-TYPE 
                       24.595                        24.495 
[1] "0.0 - 211.6 (24.6)" "0.0 - 234.3 (24.5)"
[1] "hr=" "1.1"
D48V2, continuous
                               vv
clus                            STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  DEL PEAK 19(9Q34.2) MUTATED        23       18        0        0       107
  DEL PEAK 19(9Q34.2) WILD-TYPE      66       63        8        3       246
                               vv
clus                            STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  DEL PEAK 19(9Q34.2) MUTATED          55         1         46         14
  DEL PEAK 19(9Q34.2) WILD-TYPE       190         1        104         15
                               vv
clus                            STAGE IIIC STAGE IV STAGE TIS STAGE X
  DEL PEAK 19(9Q34.2) MUTATED           18        5         0       4
  DEL PEAK 19(9Q34.2) WILD-TYPE         45       15         1       9
D48V3, multiclass
            clus
vv           DEL PEAK 19(9Q34.2) MUTATED DEL PEAK 19(9Q34.2) WILD-TYPE
  STAGE I                             23                            66
  STAGE IA                            18                            63
  STAGE IB                             0                             8
  STAGE II                             0                             3
  STAGE IIA                          107                           246
  STAGE IIB                           55                           190
  STAGE III                            1                             1
  STAGE IIIA                          46                           104
  STAGE IIIB                          14                            15
  STAGE IIIC                          18                            45
  STAGE IV                             5                            15
  STAGE TIS                            0                             1
  STAGE X                              4                             9
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                             T1  T2  T3  T4
  DEL PEAK 19(9Q34.2) MUTATED    59 185  32  15
  DEL PEAK 19(9Q34.2) WILD-TYPE 213 431  98  25
D48V4, multiclass
    clus
vv   DEL PEAK 19(9Q34.2) MUTATED DEL PEAK 19(9Q34.2) WILD-TYPE
  T1                          59                           213
  T2                         185                           431
  T3                          32                            98
  T4                          15                            25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                             N0  N1  N2  N3
  DEL PEAK 19(9Q34.2) MUTATED   147  82  40  21
  DEL PEAK 19(9Q34.2) WILD-TYPE 354 268  77  54
D48V5, multiclass
    clus
vv   DEL PEAK 19(9Q34.2) MUTATED DEL PEAK 19(9Q34.2) WILD-TYPE
  N0                         147                           354
  N1                          82                           268
  N2                          40                            77
  N3                          21                            54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D48V6, binary
                               cls
clus                              0   1
  DEL PEAK 19(9Q34.2) MUTATED   249   5
  DEL PEAK 19(9Q34.2) WILD-TYPE 630  16
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 19(9Q34.2) MUTATED    249    5
  DEL PEAK 19(9Q34.2) WILD-TYPE  630   16
   clus
vv  DEL PEAK 19(9Q34.2) MUTATED DEL PEAK 19(9Q34.2) WILD-TYPE
  0                         249                           630
  1                           5                            16
[1] 2 2
[1] FALSE
D48V7, binary
                               cls
clus                              0   1
  DEL PEAK 19(9Q34.2) MUTATED   286   7
  DEL PEAK 19(9Q34.2) WILD-TYPE 765   4
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 19(9Q34.2) MUTATED    286    7
  DEL PEAK 19(9Q34.2) WILD-TYPE  765    4
        clus
vv       DEL PEAK 19(9Q34.2) MUTATED DEL PEAK 19(9Q34.2) WILD-TYPE
  FEMALE                         286                           765
  MALE                             7                             4
[1] 2 2
[1] FALSE
                               vv
clus                            INFILTRATING CARCINOMA NOS
  DEL PEAK 19(9Q34.2) MUTATED                            0
  DEL PEAK 19(9Q34.2) WILD-TYPE                          1
                               vv
clus                            INFILTRATING DUCTAL CARCINOMA
  DEL PEAK 19(9Q34.2) MUTATED                             247
  DEL PEAK 19(9Q34.2) WILD-TYPE                           516
                               vv
clus                            INFILTRATING LOBULAR CARCINOMA
  DEL PEAK 19(9Q34.2) MUTATED                               21
  DEL PEAK 19(9Q34.2) WILD-TYPE                            171
                               vv
clus                            MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  DEL PEAK 19(9Q34.2) MUTATED                     4                     1
  DEL PEAK 19(9Q34.2) WILD-TYPE                   2                     3
                               vv
clus                            MIXED HISTOLOGY (PLEASE SPECIFY)
  DEL PEAK 19(9Q34.2) MUTATED                                  7
  DEL PEAK 19(9Q34.2) WILD-TYPE                               23
                               vv
clus                            MUCINOUS CARCINOMA OTHER  SPECIFY
  DEL PEAK 19(9Q34.2) MUTATED                    3              9
  DEL PEAK 19(9Q34.2) WILD-TYPE                 14             39
D48V8, multiclass
                                  clus
vv                                 DEL PEAK 19(9Q34.2) MUTATED
  INFILTRATING CARCINOMA NOS                                 0
  INFILTRATING DUCTAL CARCINOMA                            247
  INFILTRATING LOBULAR CARCINOMA                            21
  MEDULLARY CARCINOMA                                        4
  METAPLASTIC CARCINOMA                                      1
  MIXED HISTOLOGY (PLEASE SPECIFY)                           7
  MUCINOUS CARCINOMA                                         3
  OTHER  SPECIFY                                             9
                                  clus
vv                                 DEL PEAK 19(9Q34.2) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                   1
  INFILTRATING DUCTAL CARCINOMA                              516
  INFILTRATING LOBULAR CARCINOMA                             171
  MEDULLARY CARCINOMA                                          2
  METAPLASTIC CARCINOMA                                        3
  MIXED HISTOLOGY (PLEASE SPECIFY)                            23
  MUCINOUS CARCINOMA                                          14
  OTHER  SPECIFY                                              39
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D48V9, binary
                               cls
clus                              0   1
  DEL PEAK 19(9Q34.2) MUTATED    91 202
  DEL PEAK 19(9Q34.2) WILD-TYPE 197 572
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 19(9Q34.2) MUTATED     91  202
  DEL PEAK 19(9Q34.2) WILD-TYPE  197  572
     clus
vv    DEL PEAK 19(9Q34.2) MUTATED DEL PEAK 19(9Q34.2) WILD-TYPE
  NO                           91                           197
  YES                         202                           572
[1] 2 2
[1] FALSE
D48V10, continuous
                               vv
clus                            AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 19(9Q34.2) MUTATED                                  0    17
  DEL PEAK 19(9Q34.2) WILD-TYPE                                1    43
                               vv
clus                            BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 19(9Q34.2) MUTATED                          59   186
  DEL PEAK 19(9Q34.2) WILD-TYPE                       111   550
D48V11, multiclass
                                  clus
vv                                 DEL PEAK 19(9Q34.2) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                           0
  ASIAN                                                     17
  BLACK OR AFRICAN AMERICAN                                 59
  WHITE                                                    186
                                  clus
vv                                 DEL PEAK 19(9Q34.2) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                             1
  ASIAN                                                       43
  BLACK OR AFRICAN AMERICAN                                  111
  WHITE                                                      550
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D48V12, binary
                               cls
clus                              0   1
  DEL PEAK 19(9Q34.2) MUTATED    13 231
  DEL PEAK 19(9Q34.2) WILD-TYPE  25 627
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 19(9Q34.2) MUTATED     13  231
  DEL PEAK 19(9Q34.2) WILD-TYPE   25  627
                        clus
vv                       DEL PEAK 19(9Q34.2) MUTATED
  HISPANIC OR LATINO                              13
  NOT HISPANIC OR LATINO                         231
                        clus
vv                       DEL PEAK 19(9Q34.2) WILD-TYPE
  HISPANIC OR LATINO                                25
  NOT HISPANIC OR LATINO                           627
[1] 2 2
[1] FALSE

Clustering(49) Variable = DEL PEAK 20(10Q23.31) MUTATION ANALYSIS
D49V1, survival
                                 sevent
clus2                               0   1
  DEL PEAK 20(10Q23.31) MUTATED   272  40
  DEL PEAK 20(10Q23.31) WILD-TYPE 644  88
  DEL PEAK 20(10Q23.31) MUTATED DEL PEAK 20(10Q23.31) WILD-TYPE 
                            312                             732 
  DEL PEAK 20(10Q23.31) MUTATED DEL PEAK 20(10Q23.31) WILD-TYPE 
                             40                              88 
$`DEL PEAK 20(10Q23.31) MUTATED`
TCGA-3C-AAAU TCGA-3C-AALI TCGA-A1-A0SJ TCGA-A1-A0SN TCGA-A1-A0SO TCGA-A1-A0SP 
      129.14       131.67        13.68        39.32        28.01        19.20 
TCGA-A2-A04T TCGA-A2-A04W TCGA-A2-A0CL TCGA-A2-A0CS TCGA-A2-A0CT TCGA-A2-A0CU 
       73.84       101.98        99.12        75.55        75.25         5.19 
TCGA-A2-A0D0 TCGA-A2-A0D4 TCGA-A2-A0EV TCGA-A2-A0SV TCGA-A2-A0T0 TCGA-A2-A0T3 
       67.33        25.22        31.82        27.12        17.52        49.84 
TCGA-A2-A0YE TCGA-A2-A0YG TCGA-A2-A0YJ TCGA-A2-A1FX TCGA-A2-A1G1 TCGA-A2-A25B 
       18.21        21.90        18.61        60.72        19.20        42.44 
TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4S1 
       33.93        83.01        38.37         7.30        24.39        26.96 
TCGA-A7-A0CJ TCGA-A7-A0DA TCGA-A7-A13E TCGA-A7-A13F TCGA-A7-A13H TCGA-A7-A26E 
       30.61        35.67        20.19        25.15        29.56        31.36 
TCGA-A7-A26G TCGA-A7-A2KD TCGA-A7-A4SA TCGA-A7-A4SB TCGA-A7-A4SD TCGA-A7-A4SE 
       23.74        22.32        14.93        13.74        14.50        21.17 
TCGA-A7-A56D TCGA-A7-A5ZX TCGA-A7-A6VV TCGA-A7-A6VW TCGA-A7-A6VY TCGA-A8-A06R 
       14.73        11.05        10.29         9.37         8.75        17.98 
TCGA-A8-A06U TCGA-A8-A076 TCGA-A8-A07E TCGA-A8-A07G TCGA-A8-A07R TCGA-A8-A084 
       29.03        53.98        19.99        18.97         8.98        15.06 
TCGA-A8-A08F TCGA-A8-A08I TCGA-A8-A08L TCGA-A8-A08X TCGA-A8-A097 TCGA-A8-A09A 
       33.01        12.00         9.99        43.00        12.00         9.99 
TCGA-A8-A09B TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09M TCGA-A8-A09R TCGA-A8-A09T 
       12.00        49.05        45.07        33.07         8.98        19.04 
TCGA-A8-A0A2 TCGA-A8-A0A6 TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23H 
       19.04        21.04        17.03        38.04         0.95         5.72 
TCGA-AC-A2QH TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A62Y TCGA-AC-A6IW TCGA-AC-A7VC 
       33.04         0.92         2.27        17.42        13.58         0.03 
TCGA-AC-A8OQ TCGA-AN-A0AJ TCGA-AN-A0AK TCGA-AN-A0AL TCGA-AN-A0AS TCGA-AN-A0AT 
        1.12         9.96         7.36         6.51         0.33         0.33 
TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FX TCGA-AN-A0FZ TCGA-AN-A0XN TCGA-AN-A0XP 
        0.33         0.36         0.33         0.33         0.33         0.30 
TCGA-AN-A0XS TCGA-AN-A0XU TCGA-AN-A0XW TCGA-AO-A03M TCGA-AO-A03N TCGA-AO-A03P 
        0.33         0.33         5.59        61.35        66.77        95.70 
TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J2 TCGA-AO-A0J4 TCGA-AO-A0J6 
       47.87        58.95        29.13        32.78        52.18        37.48 
TCGA-AO-A0JA TCGA-AO-A0JD TCGA-AO-A0JL TCGA-AO-A124 TCGA-AO-A129 TCGA-AO-A12D 
       21.53        72.00        55.33       102.58       108.03        64.04 
TCGA-AO-A12F TCGA-AO-A12G TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A54O TCGA-AQ-A7U7 
       48.36        41.62        24.79        26.93        32.91        19.20 
TCGA-AR-A0TR TCGA-AR-A0TS TCGA-AR-A0TT TCGA-AR-A0TV TCGA-AR-A0TW TCGA-AR-A0U0 
        5.26        74.79        86.66        42.35        98.93        65.36 
TCGA-AR-A0U1 TCGA-AR-A0U2 TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AM 
      101.95        83.87        75.55        61.84        52.77        76.11 
TCGA-AR-A1AR TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24L TCGA-AR-A24Q TCGA-AR-A24R 
       17.23        33.73       160.90        94.22       104.28        87.22 
TCGA-AR-A24U TCGA-AR-A24W TCGA-AR-A250 TCGA-AR-A251 TCGA-AR-A254 TCGA-AR-A2LK 
       53.36        50.96        89.00        78.48        72.76        54.21 
TCGA-AR-A2LL TCGA-AR-A2LO TCGA-AR-A2LR TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0IB 
       66.15        39.39        20.38        10.59        77.62       129.57 
TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0IO TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RL 
      176.98        18.77       110.14       140.88       211.56        81.17 
TCGA-B6-A0RS TCGA-B6-A0RU TCGA-B6-A0WT TCGA-B6-A0WX TCGA-B6-A1KI TCGA-B6-A1KN 
      100.70       131.21       188.68        21.47        73.51       139.17 
TCGA-B6-A402 TCGA-B6-A408 TCGA-BH-A0AV TCGA-BH-A0AW TCGA-BH-A0B3 TCGA-BH-A0BA 
       74.99        68.12        59.84        20.45        39.55        37.22 
TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0BW TCGA-BH-A0BZ 
       21.70        44.05        45.57        49.94        11.67        49.05 
TCGA-BH-A0C1 TCGA-BH-A0EB TCGA-BH-A0GZ TCGA-BH-A0H7 TCGA-BH-A0H9 TCGA-BH-A0HA 
       44.02        24.49        10.78        23.08        41.00        52.96 
TCGA-BH-A0HP TCGA-BH-A0HW TCGA-BH-A0WA TCGA-BH-A18I TCGA-BH-A18T TCGA-BH-A1EO 
       13.61        51.32        23.05         7.23         7.36        91.99 
TCGA-BH-A1EU TCGA-BH-A1EY TCGA-BH-A1F2 TCGA-BH-A1F6 TCGA-BH-A1F8 TCGA-BH-A1FC 
       42.28        17.69        31.53        97.48        24.66       114.15 
TCGA-BH-A1FH TCGA-BH-A1FM TCGA-BH-A202 TCGA-BH-A208 TCGA-BH-A8G0 TCGA-C8-A12L 
       36.92        45.63        26.14        57.83        21.76        11.93 
TCGA-C8-A12M TCGA-C8-A12U TCGA-C8-A12W TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A1HI 
       11.77        12.66        12.66         1.87         1.12        11.28 
TCGA-C8-A1HK TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A26X 
       12.03         2.30         3.25         0.30         0.23         0.36 
TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A3M8 TCGA-C8-A8HP TCGA-D8-A13Y TCGA-D8-A142 
       12.20         0.99         0.23        13.02        11.90        13.97 
TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JF TCGA-D8-A1JG 
       14.17        17.49        18.71        15.78        12.03        12.03 
TCGA-D8-A1JI TCGA-D8-A1X5 TCGA-D8-A1XB TCGA-D8-A1XF TCGA-D8-A1XJ TCGA-D8-A1XK 
       18.97        18.58        18.15        15.22        21.83        14.50 
TCGA-D8-A1XQ TCGA-D8-A1XU TCGA-D8-A1XV TCGA-D8-A1XZ TCGA-D8-A27F TCGA-D8-A27I 
       16.41        12.99        15.16        15.32        16.04        14.43 
TCGA-D8-A27M TCGA-D8-A27T TCGA-D8-A3Z6 TCGA-E2-A10C TCGA-E2-A14N TCGA-E2-A14R 
       13.48        13.08        18.51        40.11        47.15        38.60 
TCGA-E2-A14T TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A159 
       33.30        28.60        18.51        25.41        27.12        25.05 
TCGA-E2-A15A TCGA-E2-A15F TCGA-E2-A15P TCGA-E2-A1IE TCGA-E2-A1IH TCGA-E2-A1IJ 
       23.34        21.63        19.56        38.30        33.73        28.44 
TCGA-E2-A1IN TCGA-E2-A1L7 TCGA-E2-A1LG TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK 
       22.19        27.42        18.87       106.75       102.61         8.75 
TCGA-E2-A56Z TCGA-E2-A573 TCGA-E2-A574 TCGA-E2-A576 TCGA-E9-A1N6 TCGA-E9-A1ND 
        8.28        34.92        26.56        34.29        13.48        12.59 
TCGA-E9-A1NF TCGA-E9-A1NI TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R7 TCGA-E9-A1RB 
       35.24         9.86        34.95         2.56        21.21        32.09 
TCGA-E9-A1RC TCGA-E9-A1RF TCGA-E9-A1RH TCGA-E9-A226 TCGA-E9-A22B TCGA-E9-A22D 
       40.24         6.58        34.59        34.13        22.75        41.03 
TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A244 TCGA-E9-A248 TCGA-E9-A2JS TCGA-E9-A3HO 
       12.89        23.51         0.69         1.94        29.72        26.07 
TCGA-E9-A3QA TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A6HE TCGA-EW-A1J6 TCGA-EW-A1OW 
       30.18        23.84        14.70        15.39        28.77        22.82 
TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A1P8 TCGA-EW-A1PA TCGA-EW-A2FS TCGA-EW-A2FV 
       29.82        23.11         7.86        18.90        52.73        25.91 
TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2DC TCGA-GM-A2DD TCGA-GM-A2DK TCGA-GM-A3XL 
        7.40       109.87        83.34        75.02        86.96        69.30 
TCGA-HN-A2NL TCGA-JL-A3YX TCGA-LD-A7W5 TCGA-LL-A5YM TCGA-LL-A5YO TCGA-LL-A6FP 
        2.60        11.57         7.10        15.32        14.47        22.26 
TCGA-LL-A73Z TCGA-LL-A8F5 TCGA-OL-A5RW TCGA-OL-A66I TCGA-OL-A66P TCGA-OL-A6VO 
        7.46        14.73        36.36        23.47        14.07        28.21 
TCGA-PE-A5DE TCGA-PL-A8LX TCGA-S3-A6ZG TCGA-S3-A6ZH TCGA-S3-AA11 TCGA-Z7-A8R6 
       86.96         0.16        13.12        16.93        13.84       107.05 

$`DEL PEAK 20(10Q23.31) WILD-TYPE`
TCGA-3C-AALJ TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT0 TCGA-5L-AAT1 TCGA-5T-A9QA 
       42.81        40.14        11.44        48.56        48.36         9.96 
TCGA-A1-A0SB TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH 
        8.52        14.37        43.43        48.10        14.27        47.24 
TCGA-A1-A0SI TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04P 
       20.88        31.79         7.96        18.21       104.81        18.02 
TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04U TCGA-A2-A04V TCGA-A2-A04X TCGA-A2-A04Y 
       78.41       121.94        87.25        63.12        55.43        36.13 
TCGA-A2-A0CK TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CQ TCGA-A2-A0CR 
      136.73        24.79       114.81        92.48        88.60       107.93 
TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0CX TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 
       98.99       107.93        56.81        34.55        33.76        61.58 
TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0EQ TCGA-A2-A0ER 
      101.72       134.40        80.28       107.61        79.76        74.40 
TCGA-A2-A0ES TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0EY 
       72.00        35.05        34.29        61.94        24.72        63.29 
TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SW TCGA-A2-A0SX TCGA-A2-A0SY TCGA-A2-A0T1 
       99.19        54.64        44.88        50.43        44.28        17.13 
TCGA-A2-A0T2 TCGA-A2-A0T4 TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC 
        8.38        20.52        17.46        18.90        20.75        32.55 
TCGA-A2-A0YD TCGA-A2-A0YF TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YK TCGA-A2-A0YL 
       25.28        50.47        21.67        49.48        19.33        48.46 
TCGA-A2-A0YM TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1FZ TCGA-A2-A1G0 
       31.73        23.77        23.47        17.36        22.45        20.25 
TCGA-A2-A1G4 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25A TCGA-A2-A25C TCGA-A2-A25D 
       19.56        16.47        52.47       107.70        17.19        18.15 
TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD TCGA-A2-A3XU TCGA-A2-A3XV 
      105.34        10.59        20.88        39.65        29.98        32.75 
TCGA-A2-A3XW TCGA-A2-A3XX TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A4RY TCGA-A2-A4S0 
       49.48        47.31        34.98        50.37        21.30        23.21 
TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CD TCGA-A7-A0CE TCGA-A7-A0CG TCGA-A7-A0CH 
       21.14        21.90        38.30        35.31        34.29        35.47 
TCGA-A7-A0D9 TCGA-A7-A0DB TCGA-A7-A0DC TCGA-A7-A13D TCGA-A7-A13G TCGA-A7-A26F 
       37.45        33.11        29.79        31.73        23.61        24.26 
TCGA-A7-A26H TCGA-A7-A26I TCGA-A7-A26J TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J0 
       23.80        21.73        20.61        11.34        10.59        10.29 
TCGA-A7-A3J1 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A426 TCGA-A7-A4SF TCGA-A7-A5ZV 
       11.28        13.41        14.70        11.97        17.92        12.10 
TCGA-A7-A5ZW TCGA-A7-A6VX TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06T 
       10.72        10.42        13.02        13.02         1.02        53.06 
TCGA-A8-A06X TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A079 TCGA-A8-A07B 
       31.00        26.01         1.02        17.03         9.01        43.00 
TCGA-A8-A07F TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07L TCGA-A8-A07O TCGA-A8-A07P 
       18.97        14.01        12.00        32.05         9.99        10.98 
TCGA-A8-A07S TCGA-A8-A07U TCGA-A8-A07W TCGA-A8-A07Z TCGA-A8-A082 TCGA-A8-A085 
        7.99        24.99         9.99        45.07        18.05        36.95 
TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08B TCGA-A8-A08C TCGA-A8-A08G TCGA-A8-A08J 
       13.02         0.99        38.01        28.96        19.96        37.05 
TCGA-A8-A08O TCGA-A8-A08P TCGA-A8-A08R TCGA-A8-A08S TCGA-A8-A08T TCGA-A8-A08Z 
       31.00        31.00         0.99        33.01       112.08        40.01 
TCGA-A8-A091 TCGA-A8-A092 TCGA-A8-A093 TCGA-A8-A095 TCGA-A8-A099 TCGA-A8-A09C 
       33.01        30.97        17.95        41.98         9.99         1.02 
TCGA-A8-A09D TCGA-A8-A09K TCGA-A8-A09N TCGA-A8-A09Q TCGA-A8-A09V TCGA-A8-A09W 
       50.04        29.98         1.02        25.02        15.02         0.99 
TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0A4 TCGA-A8-A0A7 TCGA-A8-A0A9 TCGA-AC-A23E 
       14.01        12.00        13.02         0.99        27.02         2.37 
TCGA-AC-A23G TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FF 
       10.85         1.48        38.53        99.35        40.57        55.43 
TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A3BB TCGA-AC-A3HN 
       36.99        38.79        26.04        50.70        32.45        16.31 
TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3TN TCGA-AC-A3W5 TCGA-AC-A3W6 TCGA-AC-A3YI 
       14.83        22.19        14.99        16.57        19.79        23.24 
TCGA-AC-A3YJ TCGA-AC-A5XS TCGA-AC-A62V TCGA-AC-A62X TCGA-AC-A6IV TCGA-AC-A6IX 
       24.79         1.55        11.44        13.71        18.67        12.26 
TCGA-AC-A6NO TCGA-AC-A7VB TCGA-AC-A8OP TCGA-AC-A8OR TCGA-AC-A8OS TCGA-AN-A03X 
        1.68         8.22        20.19         1.32         2.30         0.33 
TCGA-AN-A03Y TCGA-AN-A041 TCGA-AN-A046 TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04C 
        0.33         0.23         0.33         0.62         2.96         1.78 
TCGA-AN-A04D TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FJ 
        1.71         0.16         0.33         6.44         5.65         7.96 
TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FY 
        7.00         7.59         7.17         6.28         7.04         0.33 
TCGA-AN-A0XL TCGA-AN-A0XO TCGA-AN-A0XR TCGA-AN-A0XT TCGA-AN-A0XV TCGA-AO-A03L 
        0.33        12.33         0.33         0.33         5.33        80.28 
TCGA-AO-A03O TCGA-AO-A03R TCGA-AO-A0J3 TCGA-AO-A0J5 TCGA-AO-A0J7 TCGA-AO-A0J8 
       81.63        68.75        21.40        26.04        20.32        22.36 
TCGA-AO-A0J9 TCGA-AO-A0JB TCGA-AO-A0JC TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JG 
       53.03        50.70        50.86        76.77        21.37        26.24 
TCGA-AO-A0JI TCGA-AO-A0JJ TCGA-AO-A0JM TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 
       50.24        62.04        71.80        99.25       108.72       106.78 
TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12E TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP 
       90.58        98.27        57.30        28.37        14.73        82.62 
TCGA-AO-A1KQ TCGA-AO-A1KR TCGA-AO-A1KS TCGA-AO-A1KT TCGA-AQ-A04L TCGA-AQ-A0Y5 
       61.87        70.39         0.53        17.79       130.09         5.65 
TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AQ-A54N TCGA-AR-A0TP TCGA-AR-A0TQ TCGA-AR-A0TX 
       15.62        32.52         2.56       111.32        73.64        64.83 
TCGA-AR-A0TY TCGA-AR-A0TZ TCGA-AR-A0U3 TCGA-AR-A0U4 TCGA-AR-A1AK TCGA-AR-A1AL 
       55.86       107.24       114.02        85.97        51.25        48.82 
TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AQ TCGA-AR-A1AS TCGA-AR-A1AU 
       43.73        43.56        39.98        43.07        37.81        76.21 
TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A24K TCGA-AR-A24M TCGA-AR-A24N 
       61.28        63.62        62.14        50.89        96.89        78.51 
TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24S TCGA-AR-A24T TCGA-AR-A24V TCGA-AR-A24X 
       84.20         2.76        97.84        76.01        85.35        83.77 
TCGA-AR-A24Z TCGA-AR-A252 TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LE TCGA-AR-A2LH 
       79.00        73.18        58.92        93.83       143.21        20.25 
TCGA-AR-A2LJ TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LQ TCGA-AR-A5QM TCGA-AR-A5QN 
       62.86        52.11        38.17        40.54        54.74        16.04 
TCGA-AR-A5QP TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0I9 TCGA-B6-A0IA TCGA-B6-A0IC 
       20.45       143.38       149.59        12.13       220.90        50.70 
TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IP 
       65.72       146.50       112.37       126.12        84.59       110.93 
TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RM TCGA-B6-A0RN TCGA-B6-A0RO 
       68.45       189.01       234.28        78.02       172.96       162.05 
TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WV 
      102.77       140.48        89.46       157.41        97.48        79.63 
TCGA-B6-A0WW TCGA-B6-A0WY TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 
       18.35       113.79       129.57       129.70       186.48        28.27 
TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A2IU TCGA-B6-A401 
       68.94        58.88        43.59       101.52       170.17        85.35 
TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AU TCGA-BH-A0AY TCGA-BH-A0AZ TCGA-BH-A0B0 
      103.63        71.15        24.53        25.55        28.50        46.95 
TCGA-BH-A0B2 TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0B6 TCGA-BH-A0B7 TCGA-BH-A0B9 
       40.83        39.16        48.36        56.94        56.98        51.68 
TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BF TCGA-BH-A0BG TCGA-BH-A0BM TCGA-BH-A0BO 
       32.02        18.21        25.71        24.85        61.68        35.67 
TCGA-BH-A0BP TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0C0 TCGA-BH-A0C3 
       48.69        27.19        53.69        53.95        41.75        48.13 
TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DI 
       42.90        45.83        31.17        23.44        38.01        22.13 
TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DO TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0DS 
       13.91        48.23        17.26        15.65         3.22         2.56 
TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E1 
       38.47        67.86        47.41        16.27         4.41        15.68 
TCGA-BH-A0E2 TCGA-BH-A0E6 TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EA TCGA-BH-A0EE 
       14.30         9.63        44.81        46.19        32.58        31.00 
TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 
       24.43        30.35        15.16        37.78        35.51        24.56 
TCGA-BH-A0HB TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HO TCGA-BH-A0HQ TCGA-BH-A0HU 
       26.50        20.38         5.85         2.50        36.85        12.89 
TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 
       27.25        50.79         5.59        23.93        24.95        42.35 
TCGA-BH-A0W7 TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18J TCGA-BH-A18K TCGA-BH-A18L 
       44.81         8.81         2.01        20.12        90.84        26.66 
TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18R TCGA-BH-A18S 
       72.56        37.74        30.28        55.63        37.55        66.05 
TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1EN TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EV 
       51.39        51.16        69.93       113.82        82.85        12.00 
TCGA-BH-A1EW TCGA-BH-A1EX TCGA-BH-A1F0 TCGA-BH-A1F5 TCGA-BH-A1FB TCGA-BH-A1FD 
       55.69        49.58        25.81        89.16       120.62        33.17 
TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FN TCGA-BH-A1FR 
       74.73       122.89        63.35        55.00        72.07       144.59 
TCGA-BH-A1FU TCGA-BH-A201 TCGA-BH-A203 TCGA-BH-A204 TCGA-BH-A209 TCGA-BH-A28O 
       72.07        28.14        38.60        83.31       130.16        10.65 
TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5IZ 
        6.44        20.12        10.52       109.28         8.94        18.64 
TCGA-BH-A5J0 TCGA-BH-A6R8 TCGA-BH-A6R9 TCGA-BH-A8FY TCGA-BH-A8FZ TCGA-BH-AB28 
       23.51         9.63         5.26         9.70        18.87         9.44 
TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12V TCGA-C8-A12X 
       11.77        12.66        11.77        12.66        12.66        12.66 
TCGA-C8-A12Z TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A135 TCGA-C8-A137 TCGA-C8-A138 
        0.39         3.16         2.24         1.05         4.11         4.08 
TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HJ TCGA-C8-A1HL TCGA-C8-A26Y 
       12.33        10.92        11.34         0.16        10.42         0.43 
TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A3M7 
        8.28         9.67         9.53         0.03         9.50         0.03 
TCGA-C8-A8HQ TCGA-C8-A8HR TCGA-C8-A9FZ TCGA-D8-A13Z TCGA-D8-A140 TCGA-D8-A141 
       12.49        13.41        19.46        20.88        13.25        20.58 
TCGA-D8-A143 TCGA-D8-A145 TCGA-D8-A146 TCGA-D8-A147 TCGA-D8-A1JA TCGA-D8-A1JD 
       14.17        13.48        21.14        19.20        16.50        18.15 
TCGA-D8-A1JE TCGA-D8-A1JH TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JM 
       18.90        14.01        20.09        20.12        20.09        19.40 
TCGA-D8-A1JN TCGA-D8-A1JP TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X6 
       20.38        21.01        12.20        13.32        14.70        17.79 
TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XC TCGA-D8-A1XD 
       16.73        25.74        23.90        27.58        12.39        17.16 
TCGA-D8-A1XG TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XR TCGA-D8-A1XS 
       14.73        19.92        17.69        15.55        15.85        16.31 
TCGA-D8-A1XT TCGA-D8-A1XW TCGA-D8-A1XY TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 
        6.35        12.66        16.54        15.52         9.93        14.24 
TCGA-D8-A1Y3 TCGA-D8-A27E TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27K TCGA-D8-A27L 
       14.14        17.42        13.45        13.05         9.44        16.41 
TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27R TCGA-D8-A27V TCGA-D8-A27W TCGA-D8-A3Z5 
        4.80         0.76        10.09        12.53        12.26        33.37 
TCGA-D8-A4Z1 TCGA-D8-A73U TCGA-D8-A73W TCGA-D8-A73X TCGA-E2-A105 TCGA-E2-A107 
       21.67        16.18         8.02        12.10        43.00        34.42 
TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10E TCGA-E2-A10F 
       27.52        46.59        40.41        37.51        28.44        28.87 
TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14Q TCGA-E2-A14S TCGA-E2-A14U TCGA-E2-A14V 
       44.68        40.96        38.24        33.17        43.33        34.26 
TCGA-E2-A14W TCGA-E2-A14X TCGA-E2-A153 TCGA-E2-A154 TCGA-E2-A155 TCGA-E2-A156 
       32.02        31.96        23.24        19.43        21.04        23.87 
TCGA-E2-A158 TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15E TCGA-E2-A15G TCGA-E2-A15H 
       14.79        22.82        17.29        20.71        18.21        12.92 
TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15O 
       17.42        19.40         9.04        20.58        11.05        13.02 
TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B1 
       17.06        14.07        14.99        60.53        53.62        53.03 
TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BC TCGA-E2-A1BD TCGA-E2-A1IF 
       33.01        32.35        28.50        16.47        17.10        37.41 
TCGA-E2-A1IG TCGA-E2-A1II TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IO TCGA-E2-A1IU 
       32.78        33.70        22.65         3.88        20.98        11.08 
TCGA-E2-A1L6 TCGA-E2-A1L8 TCGA-E2-A1L9 TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LE 
       54.18        39.62        19.66        24.59        40.47        28.90 
TCGA-E2-A1LL TCGA-E2-A2P5 TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A570 TCGA-E2-A9RU 
       43.04        16.93         5.52        15.72        30.61        12.85 
TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N8 TCGA-E9-A1N9 TCGA-E9-A1NA 
       34.82        32.88        36.82        12.00        13.12        36.56 
TCGA-E9-A1NC TCGA-E9-A1NE TCGA-E9-A1NG TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R4 
       39.55        35.77        25.84        11.90        28.27         6.12 
TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1RA TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RG 
        3.02         2.76        32.09         1.12        34.65        21.27 
TCGA-E9-A1RI TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22H 
       35.64        32.05        12.53        13.32        39.09        20.71 
TCGA-E9-A243 TCGA-E9-A247 TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A295 TCGA-E9-A2JT 
       17.06        27.22         7.13        24.56         0.72         0.76 
TCGA-E9-A3Q9 TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A5FL TCGA-E9-A5UO TCGA-E9-A5UP 
       18.41        15.72        12.33         0.79        13.81        14.40 
TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 
       12.20        39.72         8.48        18.21        18.90        13.25 
TCGA-EW-A1J3 TCGA-EW-A1J5 TCGA-EW-A1OV TCGA-EW-A1OX TCGA-EW-A1OY TCGA-EW-A1OZ 
       16.57        15.68        25.94        29.95        29.85        40.41 
TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P3 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1PB 
       41.13        39.78        52.96        18.48        30.08        19.99 
TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PF TCGA-EW-A1PG TCGA-EW-A1PH 
        6.15        13.94        10.52        14.43        34.55        19.96 
TCGA-EW-A2FR TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A3U0 TCGA-EW-A423 TCGA-EW-A424 
       55.00        22.09        34.03        17.49        10.16        23.51 
TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A2DI 
       59.57       216.76        79.10        70.85        72.10        85.15 
TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A2DO TCGA-GM-A3NW TCGA-GM-A3NY 
      115.69       106.06       101.62        85.35       110.50        38.20 
TCGA-GM-A3XG TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2OB 
       43.73        66.38        72.03        13.55        18.12        62.43 
TCGA-JL-A3YW TCGA-LD-A66U TCGA-LD-A74U TCGA-LD-A7W6 TCGA-LD-A9QF TCGA-LL-A440 
       11.84        21.24        13.22        13.28        10.62        24.95 
TCGA-LL-A441 TCGA-LL-A442 TCGA-LL-A50Y TCGA-LL-A5YL TCGA-LL-A5YN TCGA-LL-A5YP 
       11.44        10.95        25.05        17.06        14.70        14.79 
TCGA-LL-A6FQ TCGA-LL-A6FR TCGA-LL-A73Y TCGA-LL-A740 TCGA-LL-A7SZ TCGA-LL-A7T0 
        2.63        16.08        15.68        14.50        14.70        12.36 
TCGA-LL-A9Q3 TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5D7 
       14.07        27.91        22.39         2.10        36.30        58.52 
TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RU TCGA-OL-A5RV TCGA-OL-A5RX TCGA-OL-A5RY 
       31.99        58.62        40.08        34.92        28.87        24.72 
TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66H TCGA-OL-A66J TCGA-OL-A66K TCGA-OL-A66L 
       22.32        20.38        26.70        65.62        41.92        42.77 
TCGA-OL-A66N TCGA-OL-A66O TCGA-OL-A6VQ TCGA-OL-A6VR TCGA-OL-A97C TCGA-PE-A5DC 
       26.04        17.36        19.73        40.11         8.91        47.01 
TCGA-PE-A5DD TCGA-PL-A8LY TCGA-PL-A8LZ TCGA-S3-A6ZF TCGA-S3-AA0Z TCGA-S3-AA10 
       64.21         0.26         9.93        16.50        16.80        15.39 
TCGA-S3-AA12 TCGA-S3-AA14 TCGA-S3-AA15 TCGA-S3-AA17 TCGA-UL-AAZ6 TCGA-UU-A93S 
       15.35        14.96        13.84        13.94        17.03         3.81 
TCGA-W8-A86G TCGA-WT-AB41 TCGA-WT-AB44 TCGA-XX-A899 TCGA-XX-A89A TCGA-Z7-A8R5 
       11.41        52.96        29.03        15.35        16.04       108.07 

  DEL PEAK 20(10Q23.31) MUTATED DEL PEAK 20(10Q23.31) WILD-TYPE 
                           0.03                            0.03 
  DEL PEAK 20(10Q23.31) MUTATED DEL PEAK 20(10Q23.31) WILD-TYPE 
                         211.56                          234.28 
  DEL PEAK 20(10Q23.31) MUTATED DEL PEAK 20(10Q23.31) WILD-TYPE 
                         23.625                          24.720 
[1] "0.0 - 211.6 (23.6)" "0.0 - 234.3 (24.7)"
[1] "hr=" "1.1"
D49V2, continuous
                                 vv
clus                              STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  DEL PEAK 20(10Q23.31) MUTATED        26       17        1        1        98
  DEL PEAK 20(10Q23.31) WILD-TYPE      63       64        7        2       255
                                 vv
clus                              STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  DEL PEAK 20(10Q23.31) MUTATED          70         1         51         13
  DEL PEAK 20(10Q23.31) WILD-TYPE       175         1         99         16
                                 vv
clus                              STAGE IIIC STAGE IV STAGE TIS STAGE X
  DEL PEAK 20(10Q23.31) MUTATED           25        6         0       5
  DEL PEAK 20(10Q23.31) WILD-TYPE         38       14         1       8
D49V3, multiclass
            clus
vv           DEL PEAK 20(10Q23.31) MUTATED DEL PEAK 20(10Q23.31) WILD-TYPE
  STAGE I                               26                              63
  STAGE IA                              17                              64
  STAGE IB                               1                               7
  STAGE II                               1                               2
  STAGE IIA                             98                             255
  STAGE IIB                             70                             175
  STAGE III                              1                               1
  STAGE IIIA                            51                              99
  STAGE IIIB                            13                              16
  STAGE IIIC                            25                              38
  STAGE IV                               6                              14
  STAGE TIS                              0                               1
  STAGE X                                5                               8
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                               T1  T2  T3  T4
  DEL PEAK 20(10Q23.31) MUTATED    68 189  36  20
  DEL PEAK 20(10Q23.31) WILD-TYPE 204 427  94  20
D49V4, multiclass
    clus
vv   DEL PEAK 20(10Q23.31) MUTATED DEL PEAK 20(10Q23.31) WILD-TYPE
  T1                            68                             204
  T2                           189                             427
  T3                            36                              94
  T4                            20                              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                               N0  N1  N2  N3
  DEL PEAK 20(10Q23.31) MUTATED   141  98  42  28
  DEL PEAK 20(10Q23.31) WILD-TYPE 360 252  75  47
D49V5, multiclass
    clus
vv   DEL PEAK 20(10Q23.31) MUTATED DEL PEAK 20(10Q23.31) WILD-TYPE
  N0                           141                             360
  N1                            98                             252
  N2                            42                              75
  N3                            28                              47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D49V6, binary
                                 cls
clus                                0   1
  DEL PEAK 20(10Q23.31) MUTATED   270   6
  DEL PEAK 20(10Q23.31) WILD-TYPE 609  15
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 20(10Q23.31) MUTATED    270    6
  DEL PEAK 20(10Q23.31) WILD-TYPE  609   15
   clus
vv  DEL PEAK 20(10Q23.31) MUTATED DEL PEAK 20(10Q23.31) WILD-TYPE
  0                           270                             609
  1                             6                              15
[1] 2 2
[1] FALSE
D49V7, binary
                                 cls
clus                                0   1
  DEL PEAK 20(10Q23.31) MUTATED   314   1
  DEL PEAK 20(10Q23.31) WILD-TYPE 737  10
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 20(10Q23.31) MUTATED    314    1
  DEL PEAK 20(10Q23.31) WILD-TYPE  737   10
        clus
vv       DEL PEAK 20(10Q23.31) MUTATED DEL PEAK 20(10Q23.31) WILD-TYPE
  FEMALE                           314                             737
  MALE                               1                              10
[1] 2 2
[1] FALSE
                                 vv
clus                              INFILTRATING CARCINOMA NOS
  DEL PEAK 20(10Q23.31) MUTATED                            0
  DEL PEAK 20(10Q23.31) WILD-TYPE                          1
                                 vv
clus                              INFILTRATING DUCTAL CARCINOMA
  DEL PEAK 20(10Q23.31) MUTATED                             242
  DEL PEAK 20(10Q23.31) WILD-TYPE                           521
                                 vv
clus                              INFILTRATING LOBULAR CARCINOMA
  DEL PEAK 20(10Q23.31) MUTATED                               39
  DEL PEAK 20(10Q23.31) WILD-TYPE                            153
                                 vv
clus                              MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  DEL PEAK 20(10Q23.31) MUTATED                     5                     2
  DEL PEAK 20(10Q23.31) WILD-TYPE                   1                     2
                                 vv
clus                              MIXED HISTOLOGY (PLEASE SPECIFY)
  DEL PEAK 20(10Q23.31) MUTATED                                  8
  DEL PEAK 20(10Q23.31) WILD-TYPE                               22
                                 vv
clus                              MUCINOUS CARCINOMA OTHER  SPECIFY
  DEL PEAK 20(10Q23.31) MUTATED                    1             17
  DEL PEAK 20(10Q23.31) WILD-TYPE                 16             31
D49V8, multiclass
                                  clus
vv                                 DEL PEAK 20(10Q23.31) MUTATED
  INFILTRATING CARCINOMA NOS                                   0
  INFILTRATING DUCTAL CARCINOMA                              242
  INFILTRATING LOBULAR CARCINOMA                              39
  MEDULLARY CARCINOMA                                          5
  METAPLASTIC CARCINOMA                                        2
  MIXED HISTOLOGY (PLEASE SPECIFY)                             8
  MUCINOUS CARCINOMA                                           1
  OTHER  SPECIFY                                              17
                                  clus
vv                                 DEL PEAK 20(10Q23.31) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                     1
  INFILTRATING DUCTAL CARCINOMA                                521
  INFILTRATING LOBULAR CARCINOMA                               153
  MEDULLARY CARCINOMA                                            1
  METAPLASTIC CARCINOMA                                          2
  MIXED HISTOLOGY (PLEASE SPECIFY)                              22
  MUCINOUS CARCINOMA                                            16
  OTHER  SPECIFY                                                31
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D49V9, binary
                                 cls
clus                                0   1
  DEL PEAK 20(10Q23.31) MUTATED    95 220
  DEL PEAK 20(10Q23.31) WILD-TYPE 193 554
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 20(10Q23.31) MUTATED     95  220
  DEL PEAK 20(10Q23.31) WILD-TYPE  193  554
     clus
vv    DEL PEAK 20(10Q23.31) MUTATED DEL PEAK 20(10Q23.31) WILD-TYPE
  NO                             95                             193
  YES                           220                             554
[1] 2 2
[1] FALSE
D49V10, continuous
                                 vv
clus                              AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 20(10Q23.31) MUTATED                                  0    19
  DEL PEAK 20(10Q23.31) WILD-TYPE                                1    41
                                 vv
clus                              BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 20(10Q23.31) MUTATED                          59   208
  DEL PEAK 20(10Q23.31) WILD-TYPE                       111   528
D49V11, multiclass
                                  clus
vv                                 DEL PEAK 20(10Q23.31) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                             0
  ASIAN                                                       19
  BLACK OR AFRICAN AMERICAN                                   59
  WHITE                                                      208
                                  clus
vv                                 DEL PEAK 20(10Q23.31) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                               1
  ASIAN                                                         41
  BLACK OR AFRICAN AMERICAN                                    111
  WHITE                                                        528
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D49V12, binary
                                 cls
clus                                0   1
  DEL PEAK 20(10Q23.31) MUTATED     5 263
  DEL PEAK 20(10Q23.31) WILD-TYPE  33 595
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 20(10Q23.31) MUTATED      5  263
  DEL PEAK 20(10Q23.31) WILD-TYPE   33  595
                        clus
vv                       DEL PEAK 20(10Q23.31) MUTATED
  HISPANIC OR LATINO                                 5
  NOT HISPANIC OR LATINO                           263
                        clus
vv                       DEL PEAK 20(10Q23.31) WILD-TYPE
  HISPANIC OR LATINO                                  33
  NOT HISPANIC OR LATINO                             595
[1] 2 2
[1] FALSE

Clustering(50) Variable = DEL PEAK 21(10Q26.3) MUTATION ANALYSIS
D50V1, survival
                                sevent
clus2                              0   1
  DEL PEAK 21(10Q26.3) MUTATED   268  44
  DEL PEAK 21(10Q26.3) WILD-TYPE 648  84
  DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE 
                           312                            732 
  DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE 
                            44                             84 
$`DEL PEAK 21(10Q26.3) MUTATED`
TCGA-3C-AAAU TCGA-3C-AALI TCGA-5T-A9QA TCGA-A1-A0SK TCGA-A1-A0SN TCGA-A1-A0SP 
      129.14       131.67         9.96        31.79        39.32        19.20 
TCGA-A2-A04P TCGA-A2-A04T TCGA-A2-A0CS TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CW 
       18.02        73.84        75.55        75.25         5.19       107.93 
TCGA-A2-A0D0 TCGA-A2-A0D2 TCGA-A2-A0D4 TCGA-A2-A0SV TCGA-A2-A0T0 TCGA-A2-A0T3 
       67.33        33.76        25.22        27.12        17.52        49.84 
TCGA-A2-A0YE TCGA-A2-A0YG TCGA-A2-A0YJ TCGA-A2-A1FW TCGA-A2-A1FX TCGA-A2-A1G1 
       18.21        21.90        18.61        17.36        60.72        19.20 
TCGA-A2-A25B TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XU TCGA-A2-A4RW TCGA-A2-A4RX 
       42.44        33.93        83.01        29.98         7.30        24.39 
TCGA-A2-A4S1 TCGA-A7-A0CJ TCGA-A7-A0DA TCGA-A7-A13E TCGA-A7-A13F TCGA-A7-A26E 
       26.96        30.61        35.67        20.19        25.15        31.36 
TCGA-A7-A2KD TCGA-A7-A4SB TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A56D TCGA-A7-A6VV 
       22.32        13.74        14.50        21.17        14.73        10.29 
TCGA-A7-A6VX TCGA-A7-A6VY TCGA-A8-A06Q TCGA-A8-A06U TCGA-A8-A06X TCGA-A8-A076 
       10.42         8.75         1.02        29.03        31.00        53.98 
TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07L TCGA-A8-A07R TCGA-A8-A084 TCGA-A8-A08F 
       18.97        14.01        32.05         8.98        15.06        33.01 
TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08P TCGA-A8-A08R TCGA-A8-A08X 
       12.00        37.05         9.99        31.00         0.99        43.00 
TCGA-A8-A097 TCGA-A8-A09A TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09R TCGA-A8-A09T 
       12.00         9.99        49.05        45.07         8.98        19.04 
TCGA-A8-A0A7 TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23H TCGA-AC-A2QH 
        0.99        17.03        38.04         0.95         5.72        33.04 
TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3W6 TCGA-AC-A62X TCGA-AC-A62Y TCGA-AC-A6IW 
        0.92         2.27        19.79        13.71        17.42        13.58 
TCGA-AC-A7VC TCGA-AC-A8OQ TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AK TCGA-AN-A0AL 
        0.03         1.12         1.71         9.96         7.36         6.51 
TCGA-AN-A0AM TCGA-AN-A0AT TCGA-AN-A0FJ TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FZ 
        0.16         0.33         7.96         0.33         0.36         0.33 
TCGA-AN-A0XN TCGA-AN-A0XP TCGA-AN-A0XS TCGA-AN-A0XU TCGA-AN-A0XW TCGA-AO-A03M 
        0.33         0.30         0.33         0.33         5.59        61.35 
TCGA-AO-A03N TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J4 TCGA-AO-A0JA 
       66.77        47.87        58.95        29.13        52.18        21.53 
TCGA-AO-A0JB TCGA-AO-A0JD TCGA-AO-A0JL TCGA-AO-A12D TCGA-AO-A12F TCGA-AO-A1KT 
       50.70        72.00        55.33        64.04        48.36        17.79 
TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A0Y5 TCGA-AQ-A54O TCGA-AQ-A7U7 
       24.79        26.93       130.09         5.65        32.91        19.20 
TCGA-AR-A0TR TCGA-AR-A0TS TCGA-AR-A0TV TCGA-AR-A0TW TCGA-AR-A0TY TCGA-AR-A0U0 
        5.26        74.79        42.35        98.93        55.86        65.36 
TCGA-AR-A0U2 TCGA-AR-A0U4 TCGA-AR-A1AH TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AQ 
       83.87        85.97        75.55        52.77        51.25        43.07 
TCGA-AR-A1AR TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24Q TCGA-AR-A24R TCGA-AR-A24U 
       17.23        33.73       160.90       104.28        87.22        53.36 
TCGA-AR-A24W TCGA-AR-A250 TCGA-AR-A251 TCGA-AR-A256 TCGA-AR-A2LK TCGA-AR-A2LL 
       50.96        89.00        78.48        93.83        54.21        66.15 
TCGA-AR-A2LO TCGA-AR-A2LR TCGA-AR-A5QN TCGA-AR-A5QQ TCGA-B6-A0IK TCGA-B6-A0IQ 
       39.39        20.38        16.04        10.59        18.77       140.88 
TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RL TCGA-B6-A0RT TCGA-B6-A0RU TCGA-B6-A0WX 
      211.56        68.45        81.17        89.46       131.21        21.47 
TCGA-B6-A0X1 TCGA-B6-A1KI TCGA-B6-A1KN TCGA-B6-A402 TCGA-B6-A408 TCGA-BH-A0AV 
      186.48        73.51       139.17        74.99        68.12        59.84 
TCGA-BH-A0AW TCGA-BH-A0B3 TCGA-BH-A0B7 TCGA-BH-A0BA TCGA-BH-A0BJ TCGA-BH-A0BP 
       20.45        39.55        56.98        37.22        21.70        48.69 
TCGA-BH-A0BV TCGA-BH-A0BW TCGA-BH-A0BZ TCGA-BH-A0C1 TCGA-BH-A0EB TCGA-BH-A0EE 
       49.94        11.67        49.05        44.02        24.49        31.00 
TCGA-BH-A0GZ TCGA-BH-A0H7 TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0HW TCGA-BH-A0HY 
       10.78        23.08        41.00        52.96        51.32        50.79 
TCGA-BH-A0WA TCGA-BH-A18I TCGA-BH-A18Q TCGA-BH-A18T TCGA-BH-A1EO TCGA-BH-A1EU 
       23.05         7.23        55.63         7.36        91.99        42.28 
TCGA-BH-A1F2 TCGA-BH-A1F6 TCGA-BH-A1F8 TCGA-BH-A1FC TCGA-BH-A1FH TCGA-BH-A1FM 
       31.53        97.48        24.66       114.15        36.92        45.63 
TCGA-BH-A1FN TCGA-BH-A202 TCGA-BH-A203 TCGA-BH-A208 TCGA-BH-A209 TCGA-C8-A12L 
       72.07        26.14        38.60        57.83       130.16        11.93 
TCGA-C8-A12M TCGA-C8-A12O TCGA-C8-A12U TCGA-C8-A12W TCGA-C8-A132 TCGA-C8-A134 
       11.77        12.66        12.66        12.66         1.87         1.12 
TCGA-C8-A1HI TCGA-C8-A1HK TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A26V TCGA-C8-A26W 
       11.28        12.03         2.30         3.25         0.30         0.23 
TCGA-C8-A26Y TCGA-C8-A27A TCGA-C8-A3M8 TCGA-C8-A8HP TCGA-C8-A8HQ TCGA-D8-A13Y 
        0.43        12.20         0.23        13.02        12.49        11.90 
TCGA-D8-A142 TCGA-D8-A147 TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JB TCGA-D8-A1JC 
       13.97        19.20        14.17        17.49        18.71        15.78 
TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JI TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JP 
       12.03        12.03        18.97        20.12        20.09        21.01 
TCGA-D8-A1X5 TCGA-D8-A1XB TCGA-D8-A1XF TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XU 
       18.58        18.15        15.22        21.83        14.50        12.99 
TCGA-D8-A1XV TCGA-D8-A1XZ TCGA-D8-A27F TCGA-D8-A27H TCGA-D8-A27I TCGA-D8-A27T 
       15.16        15.32        16.04        13.05        14.43        13.08 
TCGA-E2-A108 TCGA-E2-A10C TCGA-E2-A14R TCGA-E2-A14T TCGA-E2-A14W TCGA-E2-A14Y 
       27.52        40.11        38.60        33.30        32.02        28.60 
TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A158 TCGA-E2-A159 TCGA-E2-A15E TCGA-E2-A15F 
       25.41        27.12        14.79        25.05        20.71        21.63 
TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A1IE TCGA-E2-A1IN TCGA-E2-A1L7 
       19.56        17.06        14.07        38.30        22.19        27.42 
TCGA-E2-A1LB TCGA-E2-A1LG TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A56Z TCGA-E2-A573 
       40.47        18.87       106.75       102.61         8.28        34.92 
TCGA-E2-A574 TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NF TCGA-E9-A1NI TCGA-E9-A1R2 
       26.56        39.55        12.59        35.24         9.86        34.95 
TCGA-E9-A1R3 TCGA-E9-A1R7 TCGA-E9-A1RC TCGA-E9-A1RF TCGA-E9-A1RH TCGA-E9-A226 
        2.56        21.21        40.24         6.58        34.59        34.13 
TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A244 TCGA-E9-A247 TCGA-E9-A248 TCGA-E9-A2JS 
       41.03        12.89         0.69        27.22         1.94        29.72 
TCGA-E9-A3HO TCGA-E9-A3QA TCGA-E9-A54Y TCGA-E9-A5FK TCGA-EW-A1J6 TCGA-EW-A1OW 
       26.07        30.18        23.84        14.70        28.77        22.82 
TCGA-EW-A1OZ TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A1P8 TCGA-EW-A1PC TCGA-EW-A2FS 
       40.41        29.82        23.11         7.86         6.15        52.73 
TCGA-EW-A2FV TCGA-EW-A3U0 TCGA-GI-A2C9 TCGA-GM-A2DD TCGA-GM-A2DK TCGA-GM-A3XL 
       25.91        17.49       109.87        75.02        86.96        69.30 
TCGA-HN-A2NL TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LL-A5YM TCGA-LL-A5YO TCGA-LL-A6FP 
        2.60        11.84        11.57        15.32        14.47        22.26 
TCGA-LL-A73Z TCGA-LL-A8F5 TCGA-LQ-A4E4 TCGA-OL-A5RW TCGA-OL-A66I TCGA-OL-A6VO 
        7.46        14.73        27.91        36.36        23.47        28.21 
TCGA-PE-A5DE TCGA-PL-A8LX TCGA-S3-A6ZG TCGA-S3-A6ZH TCGA-S3-AA17 TCGA-UU-A93S 
       86.96         0.16        13.12        16.93        13.94         3.81 

$`DEL PEAK 21(10Q26.3) WILD-TYPE`
TCGA-3C-AALJ TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT0 TCGA-5L-AAT1 TCGA-A1-A0SB 
       42.81        40.14        11.44        48.56        48.36         8.52 
TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI 
       14.37        43.43        48.10        14.27        47.24        20.88 
TCGA-A1-A0SJ TCGA-A1-A0SM TCGA-A1-A0SO TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04Q 
       13.68         7.96        28.01        18.21       104.81        78.41 
TCGA-A2-A04R TCGA-A2-A04U TCGA-A2-A04V TCGA-A2-A04W TCGA-A2-A04X TCGA-A2-A04Y 
      121.94        87.25        63.12       101.98        55.43        36.13 
TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CQ 
      136.73        99.12        24.79       114.81        92.48        88.60 
TCGA-A2-A0CR TCGA-A2-A0CV TCGA-A2-A0CX TCGA-A2-A0D1 TCGA-A2-A0D3 TCGA-A2-A0EM 
      107.93        98.99        56.81        34.55        61.58       101.72 
TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0EQ TCGA-A2-A0ER TCGA-A2-A0ES 
      134.40        80.28       107.61        79.76        74.40        72.00 
TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0EY 
       35.05        34.29        31.82        61.94        24.72        63.29 
TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SW TCGA-A2-A0SX TCGA-A2-A0SY TCGA-A2-A0T1 
       99.19        54.64        44.88        50.43        44.28        17.13 
TCGA-A2-A0T2 TCGA-A2-A0T4 TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC 
        8.38        20.52        17.46        18.90        20.75        32.55 
TCGA-A2-A0YD TCGA-A2-A0YF TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YK TCGA-A2-A0YL 
       25.28        50.47        21.67        49.48        19.33        48.46 
TCGA-A2-A0YM TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G4 
       31.73        23.77        23.47        22.45        20.25        19.56 
TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25A TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25E 
       16.47        52.47       107.70        17.19        18.15       105.34 
TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX 
       10.59        20.88        39.65        32.75        49.48        47.31 
TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A3Y0 TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S2 
       34.98        50.37        38.37        21.30        23.21        21.14 
TCGA-A2-A4S3 TCGA-A7-A0CD TCGA-A7-A0CE TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0D9 
       21.90        38.30        35.31        34.29        35.47        37.45 
TCGA-A7-A0DB TCGA-A7-A0DC TCGA-A7-A13D TCGA-A7-A13G TCGA-A7-A13H TCGA-A7-A26F 
       33.11        29.79        31.73        23.61        29.56        24.26 
TCGA-A7-A26G TCGA-A7-A26H TCGA-A7-A26I TCGA-A7-A26J TCGA-A7-A3IY TCGA-A7-A3IZ 
       23.74        23.80        21.73        20.61        11.34        10.59 
TCGA-A7-A3J0 TCGA-A7-A3J1 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A426 TCGA-A7-A4SA 
       10.29        11.28        13.41        14.70        11.97        14.93 
TCGA-A7-A4SF TCGA-A7-A5ZV TCGA-A7-A5ZW TCGA-A7-A5ZX TCGA-A7-A6VW TCGA-A8-A06O 
       17.92        12.10        10.72        11.05         9.37        13.02 
TCGA-A8-A06P TCGA-A8-A06R TCGA-A8-A06T TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A075 
       13.02        17.98        53.06        26.01         1.02        17.03 
TCGA-A8-A079 TCGA-A8-A07B TCGA-A8-A07E TCGA-A8-A07F TCGA-A8-A07J TCGA-A8-A07O 
        9.01        43.00        19.99        18.97        12.00         9.99 
TCGA-A8-A07P TCGA-A8-A07S TCGA-A8-A07U TCGA-A8-A07W TCGA-A8-A07Z TCGA-A8-A082 
       10.98         7.99        24.99         9.99        45.07        18.05 
TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08B TCGA-A8-A08C TCGA-A8-A08G 
       36.95        13.02         0.99        38.01        28.96        19.96 
TCGA-A8-A08O TCGA-A8-A08S TCGA-A8-A08T TCGA-A8-A08Z TCGA-A8-A091 TCGA-A8-A092 
       31.00        33.01       112.08        40.01        33.01        30.97 
TCGA-A8-A093 TCGA-A8-A095 TCGA-A8-A099 TCGA-A8-A09B TCGA-A8-A09C TCGA-A8-A09D 
       17.95        41.98         9.99        12.00         1.02        50.04 
TCGA-A8-A09K TCGA-A8-A09M TCGA-A8-A09N TCGA-A8-A09Q TCGA-A8-A09V TCGA-A8-A09W 
       29.98        33.07         1.02        25.02        15.02         0.99 
TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A9 
       14.01        12.00        19.04        13.02        21.04        27.02 
TCGA-AC-A23E TCGA-AC-A23G TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FB 
        2.37        10.85         1.48        38.53        99.35        40.57 
TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A3BB 
       55.43        36.99        38.79        26.04        50.70        32.45 
TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3TN TCGA-AC-A3W5 TCGA-AC-A3YI 
       16.31        14.83        22.19        14.99        16.57        23.24 
TCGA-AC-A3YJ TCGA-AC-A5XS TCGA-AC-A62V TCGA-AC-A6IV TCGA-AC-A6IX TCGA-AC-A6NO 
       24.79         1.55        11.44        18.67        12.26         1.68 
TCGA-AC-A7VB TCGA-AC-A8OP TCGA-AC-A8OR TCGA-AC-A8OS TCGA-AN-A03X TCGA-AN-A03Y 
        8.22        20.19         1.32         2.30         0.33         0.33 
TCGA-AN-A041 TCGA-AN-A046 TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A0AR 
        0.23         0.33         0.62         2.96         1.78         0.33 
TCGA-AN-A0AS TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FN 
        0.33         6.44         5.65         7.00         7.59         7.17 
TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FX TCGA-AN-A0FY TCGA-AN-A0XL TCGA-AN-A0XO 
        6.28         7.04         0.33         0.33         0.33        12.33 
TCGA-AN-A0XR TCGA-AN-A0XT TCGA-AN-A0XV TCGA-AO-A03L TCGA-AO-A03O TCGA-AO-A03P 
        0.33         0.33         5.33        80.28        81.63        95.70 
TCGA-AO-A03R TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J5 TCGA-AO-A0J6 TCGA-AO-A0J7 
       68.75        32.78        21.40        26.04        37.48        20.32 
TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JC TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JG 
       22.36        53.03        50.86        76.77        21.37        26.24 
TCGA-AO-A0JI TCGA-AO-A0JJ TCGA-AO-A0JM TCGA-AO-A124 TCGA-AO-A125 TCGA-AO-A126 
       50.24        62.04        71.80       102.58        99.25       108.72 
TCGA-AO-A128 TCGA-AO-A129 TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12E TCGA-AO-A12G 
      106.78       108.03        90.58        98.27        57.30        41.62 
TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KQ TCGA-AO-A1KR TCGA-AO-A1KS 
       28.37        14.73        82.62        61.87        70.39         0.53 
TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AQ-A54N TCGA-AR-A0TP TCGA-AR-A0TQ TCGA-AR-A0TT 
       15.62        32.52         2.56       111.32        73.64        86.66 
TCGA-AR-A0TX TCGA-AR-A0TZ TCGA-AR-A0U1 TCGA-AR-A0U3 TCGA-AR-A1AI TCGA-AR-A1AL 
       64.83       107.24       101.95       114.02        61.84        48.82 
TCGA-AR-A1AM TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AS TCGA-AR-A1AU 
       76.11        43.73        43.56        39.98        37.81        76.21 
TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A24K TCGA-AR-A24L TCGA-AR-A24M 
       61.28        63.62        62.14        50.89        94.22        96.89 
TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24S TCGA-AR-A24T TCGA-AR-A24V 
       78.51        84.20         2.76        97.84        76.01        85.35 
TCGA-AR-A24X TCGA-AR-A24Z TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A255 TCGA-AR-A2LE 
       83.77        79.00        73.18        72.76        58.92       143.21 
TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LQ TCGA-AR-A5QM 
       20.25        62.86        52.11        38.17        40.54        54.74 
TCGA-AR-A5QP TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0I9 TCGA-B6-A0IA 
       20.45        77.62       143.38       149.59        12.13       220.90 
TCGA-B6-A0IB TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0IJ 
      129.57        50.70        65.72       146.50       112.37       176.98 
TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IO TCGA-B6-A0IP TCGA-B6-A0RH TCGA-B6-A0RI 
      126.12        84.59       110.14       110.93       189.01       234.28 
TCGA-B6-A0RM TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RS 
       78.02       172.96       162.05       102.77       140.48       100.70 
TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0WY 
      157.41        97.48       188.68        79.63        18.35       113.79 
TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KC 
      129.57       129.70        28.27        68.94        58.88        43.59 
TCGA-B6-A1KF TCGA-B6-A2IU TCGA-B6-A401 TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AU 
      101.52       170.17        85.35       103.63        71.15        24.53 
TCGA-BH-A0AY TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B2 TCGA-BH-A0B4 TCGA-BH-A0B5 
       25.55        28.50        46.95        40.83        39.16        48.36 
TCGA-BH-A0B6 TCGA-BH-A0B9 TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BF TCGA-BH-A0BG 
       56.94        51.68        32.02        18.21        25.71        24.85 
TCGA-BH-A0BL TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS 
       44.05        61.68        35.67        27.19        53.69        53.95 
TCGA-BH-A0BT TCGA-BH-A0C0 TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DE 
       45.57        41.75        48.13        42.90        45.83        31.17 
TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DO 
       23.44        38.01        22.13        13.91        48.23        17.26 
TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX 
       15.65         3.22         2.56        38.47        67.86        47.41 
TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E6 TCGA-BH-A0E7 
       16.27         4.41        15.68        14.30         9.63        44.81 
TCGA-BH-A0E9 TCGA-BH-A0EA TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0H0 TCGA-BH-A0H3 
       46.19        32.58        24.43        30.35        15.16        37.78 
TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0HB TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HO 
       35.51        24.56        26.50        20.38         5.85         2.50 
TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HX TCGA-BH-A0RX TCGA-BH-A0W3 
       13.61        36.85        12.89        27.25         5.59        23.93 
TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18J 
       24.95        42.35        44.81         8.81         2.01        20.12 
TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18R 
       90.84        26.66        72.56        37.74        30.28        37.55 
TCGA-BH-A18S TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1EN TCGA-BH-A1ES TCGA-BH-A1ET 
       66.05        51.39        51.16        69.93       113.82        82.85 
TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1EX TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F5 
       12.00        55.69        49.58        17.69        25.81        89.16 
TCGA-BH-A1FB TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FJ TCGA-BH-A1FL 
      120.62        33.17        74.73       122.89        63.35        55.00 
TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A201 TCGA-BH-A204 TCGA-BH-A28O TCGA-BH-A28Q 
      144.59        72.07        28.14        83.31        10.65         6.44 
TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5IZ TCGA-BH-A5J0 
       20.12        10.52       109.28         8.94        18.64        23.51 
TCGA-BH-A6R8 TCGA-BH-A6R9 TCGA-BH-A8FY TCGA-BH-A8FZ TCGA-BH-A8G0 TCGA-BH-AB28 
        9.63         5.26         9.70        18.87        21.76         9.44 
TCGA-C8-A12N TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12V TCGA-C8-A12X TCGA-C8-A12Z 
       11.77        11.77        12.66        12.66        12.66         0.39 
TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A135 TCGA-C8-A137 TCGA-C8-A138 TCGA-C8-A1HE 
        3.16         2.24         1.05         4.11         4.08        12.33 
TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HJ TCGA-C8-A1HL TCGA-C8-A26X TCGA-C8-A26Z 
       10.92        11.34         0.16        10.42         0.36         8.28 
TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A27B TCGA-C8-A3M7 
        9.67         9.53         0.03         9.50         0.99         0.03 
TCGA-C8-A8HR TCGA-C8-A9FZ TCGA-D8-A13Z TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A143 
       13.41        19.46        20.88        13.25        20.58        14.17 
TCGA-D8-A145 TCGA-D8-A146 TCGA-D8-A1JA TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JH 
       13.48        21.14        16.50        18.15        18.90        14.01 
TCGA-D8-A1JJ TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU 
       20.09        19.40        20.38        12.20        13.32        14.70 
TCGA-D8-A1X6 TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XC 
       17.79        16.73        25.74        23.90        27.58        12.39 
TCGA-D8-A1XD TCGA-D8-A1XG TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XQ 
       17.16        14.73        19.92        17.69        15.55        16.41 
TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XT TCGA-D8-A1XW TCGA-D8-A1XY TCGA-D8-A1Y0 
       15.85        16.31         6.35        12.66        16.54        15.52 
TCGA-D8-A1Y1 TCGA-D8-A1Y2 TCGA-D8-A1Y3 TCGA-D8-A27E TCGA-D8-A27G TCGA-D8-A27K 
        9.93        14.24        14.14        17.42        13.45         9.44 
TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27R TCGA-D8-A27V 
       16.41        13.48         4.80         0.76        10.09        12.53 
TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-D8-A73U TCGA-D8-A73W 
       12.26        33.37        18.51        21.67        16.18         8.02 
TCGA-D8-A73X TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10B 
       12.10        43.00        34.42        46.59        40.41        37.51 
TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14Q 
       28.44        28.87        47.15        44.68        40.96        38.24 
TCGA-E2-A14S TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14X TCGA-E2-A14Z TCGA-E2-A153 
       33.17        43.33        34.26        31.96        18.51        23.24 
TCGA-E2-A154 TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A15A TCGA-E2-A15C TCGA-E2-A15D 
       19.43        21.04        23.87        23.34        22.82        17.29 
TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L 
       18.21        12.92        17.42        19.40         9.04        20.58 
TCGA-E2-A15M TCGA-E2-A15O TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B1 
       11.05        13.02        14.99        60.53        53.62        53.03 
TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BC TCGA-E2-A1BD TCGA-E2-A1IF 
       33.01        32.35        28.50        16.47        17.10        37.41 
TCGA-E2-A1IG TCGA-E2-A1IH TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL 
       32.78        33.73        33.70        28.44        22.65         3.88 
TCGA-E2-A1IO TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L8 TCGA-E2-A1L9 TCGA-E2-A1LA 
       20.98        11.08        54.18        39.62        19.66        24.59 
TCGA-E2-A1LE TCGA-E2-A1LK TCGA-E2-A1LL TCGA-E2-A2P5 TCGA-E2-A2P6 TCGA-E2-A3DX 
       28.90         8.75        43.04        16.93         5.52        15.72 
TCGA-E2-A570 TCGA-E2-A576 TCGA-E2-A9RU TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 
       30.61        34.29        12.85        34.82        32.88        36.82 
TCGA-E9-A1N6 TCGA-E9-A1N8 TCGA-E9-A1N9 TCGA-E9-A1NA TCGA-E9-A1NE TCGA-E9-A1NG 
       13.48        12.00        13.12        36.56        35.77        25.84 
TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1RA 
       11.90        28.27         6.12         3.02         2.76        32.09 
TCGA-E9-A1RB TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RG TCGA-E9-A1RI TCGA-E9-A227 
       32.09         1.12        34.65        21.27        35.64        32.05 
TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A22G TCGA-E9-A22H 
       12.53        13.32        39.09        22.75        23.51        20.71 
TCGA-E9-A243 TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A295 TCGA-E9-A2JT TCGA-E9-A3Q9 
       17.06         7.13        24.56         0.72         0.76        18.41 
TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A5FL TCGA-E9-A5UO TCGA-E9-A5UP TCGA-E9-A6HE 
       15.72        12.33         0.79        13.81        14.40        15.39 
TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 
       12.20        39.72         8.48        18.21        18.90        13.25 
TCGA-EW-A1J3 TCGA-EW-A1J5 TCGA-EW-A1OV TCGA-EW-A1OX TCGA-EW-A1OY TCGA-EW-A1P0 
       16.57        15.68        25.94        29.95        29.85        41.13 
TCGA-EW-A1P1 TCGA-EW-A1P3 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1PA TCGA-EW-A1PB 
       39.78        52.96        18.48        30.08        18.90        19.99 
TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PF TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FR 
       13.94        10.52        14.43        34.55        19.96        55.00 
TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A423 TCGA-EW-A424 TCGA-GI-A2C8 TCGA-GM-A2D9 
       22.09        34.03        10.16        23.51         7.40        59.57 
TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DC TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A2DI 
      216.76        79.10        83.34        70.85        72.10        85.15 
TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A2DO TCGA-GM-A3NW TCGA-GM-A3NY 
      115.69       106.06       101.62        85.35       110.50        38.20 
TCGA-GM-A3XG TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2OB 
       43.73        66.38        72.03        13.55        18.12        62.43 
TCGA-LD-A66U TCGA-LD-A74U TCGA-LD-A7W5 TCGA-LD-A7W6 TCGA-LD-A9QF TCGA-LL-A440 
       21.24        13.22         7.10        13.28        10.62        24.95 
TCGA-LL-A441 TCGA-LL-A442 TCGA-LL-A50Y TCGA-LL-A5YL TCGA-LL-A5YN TCGA-LL-A5YP 
       11.44        10.95        25.05        17.06        14.70        14.79 
TCGA-LL-A6FQ TCGA-LL-A6FR TCGA-LL-A73Y TCGA-LL-A740 TCGA-LL-A7SZ TCGA-LL-A7T0 
        2.63        16.08        15.68        14.50        14.70        12.36 
TCGA-LL-A9Q3 TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5D7 TCGA-OL-A5D8 
       14.07        22.39         2.10        36.30        58.52        31.99 
TCGA-OL-A5DA TCGA-OL-A5RU TCGA-OL-A5RV TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5RZ 
       58.62        40.08        34.92        28.87        24.72        22.32 
TCGA-OL-A5S0 TCGA-OL-A66H TCGA-OL-A66J TCGA-OL-A66K TCGA-OL-A66L TCGA-OL-A66N 
       20.38        26.70        65.62        41.92        42.77        26.04 
TCGA-OL-A66O TCGA-OL-A66P TCGA-OL-A6VQ TCGA-OL-A6VR TCGA-OL-A97C TCGA-PE-A5DC 
       17.36        14.07        19.73        40.11         8.91        47.01 
TCGA-PE-A5DD TCGA-PL-A8LY TCGA-PL-A8LZ TCGA-S3-A6ZF TCGA-S3-AA0Z TCGA-S3-AA10 
       64.21         0.26         9.93        16.50        16.80        15.39 
TCGA-S3-AA11 TCGA-S3-AA12 TCGA-S3-AA14 TCGA-S3-AA15 TCGA-UL-AAZ6 TCGA-W8-A86G 
       13.84        15.35        14.96        13.84        17.03        11.41 
TCGA-WT-AB41 TCGA-WT-AB44 TCGA-XX-A899 TCGA-XX-A89A TCGA-Z7-A8R5 TCGA-Z7-A8R6 
       52.96        29.03        15.35        16.04       108.07       107.05 

  DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE 
                          0.03                           0.03 
  DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE 
                        211.56                         234.28 
  DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE 
                        23.095                         24.755 
[1] "0.0 - 211.6 (23.1)" "0.0 - 234.3 (24.8)"
[1] "hr=" "1.4"
D50V2, continuous
                                vv
clus                             STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  DEL PEAK 21(10Q26.3) MUTATED        25       14        1        1       100
  DEL PEAK 21(10Q26.3) WILD-TYPE      64       67        7        2       253
                                vv
clus                             STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  DEL PEAK 21(10Q26.3) MUTATED          72         1         56         11
  DEL PEAK 21(10Q26.3) WILD-TYPE       173         1         94         18
                                vv
clus                             STAGE IIIC STAGE IV STAGE TIS STAGE X
  DEL PEAK 21(10Q26.3) MUTATED           19        9         0       4
  DEL PEAK 21(10Q26.3) WILD-TYPE         44       11         1       9
D50V3, multiclass
            clus
vv           DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE
  STAGE I                              25                             64
  STAGE IA                             14                             67
  STAGE IB                              1                              7
  STAGE II                              1                              2
  STAGE IIA                           100                            253
  STAGE IIB                            72                            173
  STAGE III                             1                              1
  STAGE IIIA                           56                             94
  STAGE IIIB                           11                             18
  STAGE IIIC                           19                             44
  STAGE IV                              9                             11
  STAGE TIS                             0                              1
  STAGE X                               4                              9
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              T1  T2  T3  T4
  DEL PEAK 21(10Q26.3) MUTATED    65 191  39  18
  DEL PEAK 21(10Q26.3) WILD-TYPE 207 425  91  22
D50V4, multiclass
    clus
vv   DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE
  T1                           65                            207
  T2                          191                            425
  T3                           39                             91
  T4                           18                             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              N0  N1  N2  N3
  DEL PEAK 21(10Q26.3) MUTATED   139 102  45  22
  DEL PEAK 21(10Q26.3) WILD-TYPE 362 248  72  53
D50V5, multiclass
    clus
vv   DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE
  N0                          139                            362
  N1                          102                            248
  N2                           45                             72
  N3                           22                             53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D50V6, binary
                                cls
clus                               0   1
  DEL PEAK 21(10Q26.3) MUTATED   265   9
  DEL PEAK 21(10Q26.3) WILD-TYPE 614  12
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 21(10Q26.3) MUTATED    265    9
  DEL PEAK 21(10Q26.3) WILD-TYPE  614   12
   clus
vv  DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE
  0                          265                            614
  1                            9                             12
[1] 2 2
[1] FALSE
D50V7, binary
                                cls
clus                               0   1
  DEL PEAK 21(10Q26.3) MUTATED   313   2
  DEL PEAK 21(10Q26.3) WILD-TYPE 738   9
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 21(10Q26.3) MUTATED    313    2
  DEL PEAK 21(10Q26.3) WILD-TYPE  738    9
        clus
vv       DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE
  FEMALE                          313                            738
  MALE                              2                              9
[1] 2 2
[1] FALSE
                                vv
clus                             INFILTRATING CARCINOMA NOS
  DEL PEAK 21(10Q26.3) MUTATED                            0
  DEL PEAK 21(10Q26.3) WILD-TYPE                          1
                                vv
clus                             INFILTRATING DUCTAL CARCINOMA
  DEL PEAK 21(10Q26.3) MUTATED                             251
  DEL PEAK 21(10Q26.3) WILD-TYPE                           512
                                vv
clus                             INFILTRATING LOBULAR CARCINOMA
  DEL PEAK 21(10Q26.3) MUTATED                               31
  DEL PEAK 21(10Q26.3) WILD-TYPE                            161
                                vv
clus                             MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  DEL PEAK 21(10Q26.3) MUTATED                     5                     2
  DEL PEAK 21(10Q26.3) WILD-TYPE                   1                     2
                                vv
clus                             MIXED HISTOLOGY (PLEASE SPECIFY)
  DEL PEAK 21(10Q26.3) MUTATED                                  8
  DEL PEAK 21(10Q26.3) WILD-TYPE                               22
                                vv
clus                             MUCINOUS CARCINOMA OTHER  SPECIFY
  DEL PEAK 21(10Q26.3) MUTATED                    2             15
  DEL PEAK 21(10Q26.3) WILD-TYPE                 15             33
D50V8, multiclass
                                  clus
vv                                 DEL PEAK 21(10Q26.3) MUTATED
  INFILTRATING CARCINOMA NOS                                  0
  INFILTRATING DUCTAL CARCINOMA                             251
  INFILTRATING LOBULAR CARCINOMA                             31
  MEDULLARY CARCINOMA                                         5
  METAPLASTIC CARCINOMA                                       2
  MIXED HISTOLOGY (PLEASE SPECIFY)                            8
  MUCINOUS CARCINOMA                                          2
  OTHER  SPECIFY                                             15
                                  clus
vv                                 DEL PEAK 21(10Q26.3) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                    1
  INFILTRATING DUCTAL CARCINOMA                               512
  INFILTRATING LOBULAR CARCINOMA                              161
  MEDULLARY CARCINOMA                                           1
  METAPLASTIC CARCINOMA                                         2
  MIXED HISTOLOGY (PLEASE SPECIFY)                             22
  MUCINOUS CARCINOMA                                           15
  OTHER  SPECIFY                                               33
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D50V9, binary
                                cls
clus                               0   1
  DEL PEAK 21(10Q26.3) MUTATED    92 223
  DEL PEAK 21(10Q26.3) WILD-TYPE 196 551
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 21(10Q26.3) MUTATED     92  223
  DEL PEAK 21(10Q26.3) WILD-TYPE  196  551
     clus
vv    DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE
  NO                            92                            196
  YES                          223                            551
[1] 2 2
[1] FALSE
D50V10, continuous
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 21(10Q26.3) MUTATED                                  0    23
  DEL PEAK 21(10Q26.3) WILD-TYPE                                1    37
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 21(10Q26.3) MUTATED                          57   205
  DEL PEAK 21(10Q26.3) WILD-TYPE                       113   531
D50V11, multiclass
                                  clus
vv                                 DEL PEAK 21(10Q26.3) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            0
  ASIAN                                                      23
  BLACK OR AFRICAN AMERICAN                                  57
  WHITE                                                     205
                                  clus
vv                                 DEL PEAK 21(10Q26.3) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              1
  ASIAN                                                        37
  BLACK OR AFRICAN AMERICAN                                   113
  WHITE                                                       531
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D50V12, binary
                                cls
clus                               0   1
  DEL PEAK 21(10Q26.3) MUTATED     4 262
  DEL PEAK 21(10Q26.3) WILD-TYPE  34 596
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 21(10Q26.3) MUTATED      4  262
  DEL PEAK 21(10Q26.3) WILD-TYPE   34  596
                        clus
vv                       DEL PEAK 21(10Q26.3) MUTATED
  HISPANIC OR LATINO                                4
  NOT HISPANIC OR LATINO                          262
                        clus
vv                       DEL PEAK 21(10Q26.3) WILD-TYPE
  HISPANIC OR LATINO                                 34
  NOT HISPANIC OR LATINO                            596
[1] 2 2
[1] FALSE

Clustering(51) Variable = DEL PEAK 22(11P15.5) MUTATION ANALYSIS
D51V1, survival
                                sevent
clus2                              0   1
  DEL PEAK 22(11P15.5) MUTATED   258  42
  DEL PEAK 22(11P15.5) WILD-TYPE 658  86
  DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE 
                           300                            744 
  DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE 
                            42                             86 
$`DEL PEAK 22(11P15.5) MUTATED`
TCGA-A1-A0SO TCGA-A2-A04P TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A0CO TCGA-A2-A0CX 
       28.01        18.02        73.84        87.25       114.81        56.81 
TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0EQ TCGA-A2-A0ET TCGA-A2-A0EY TCGA-A2-A0SU 
       67.33        34.55        79.76        35.05        63.29        54.64 
TCGA-A2-A0SX TCGA-A2-A0T0 TCGA-A2-A0YG TCGA-A2-A0YJ TCGA-A2-A0YM TCGA-A2-A0YT 
       50.43        17.52        21.90        18.61        31.73        23.77 
TCGA-A2-A25B TCGA-A2-A25E TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XX TCGA-A2-A3Y0 
       42.44       105.34        33.93        83.01        47.31        38.37 
TCGA-A2-A4RW TCGA-A7-A0CE TCGA-A7-A0DA TCGA-A7-A13D TCGA-A7-A13E TCGA-A7-A13F 
        7.30        35.31        35.67        31.73        20.19        25.15 
TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26I TCGA-A7-A4SA TCGA-A7-A4SD TCGA-A7-A56D 
       31.36        24.26        21.73        14.93        14.50        14.73 
TCGA-A7-A6VV TCGA-A7-A6VW TCGA-A7-A6VX TCGA-A7-A6VY TCGA-A8-A06O TCGA-A8-A06R 
       10.29         9.37        10.42         8.75        13.02        17.98 
TCGA-A8-A06U TCGA-A8-A06X TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A07E TCGA-A8-A07G 
       29.03        31.00         1.02        17.03        19.99        18.97 
TCGA-A8-A07R TCGA-A8-A07U TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08F 
        8.98        24.99        36.95        13.02         0.99        33.01 
TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08P TCGA-A8-A08R TCGA-A8-A08X 
       12.00        37.05         9.99        31.00         0.99        43.00 
TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09C TCGA-A8-A09I TCGA-A8-A09M TCGA-A8-A09T 
        9.99        12.00         1.02        45.07        33.07        19.04 
TCGA-A8-A0A2 TCGA-A8-A0AB TCGA-AC-A23E TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FG 
       19.04        17.03         2.37        38.53        99.35        36.99 
TCGA-AC-A2QH TCGA-AC-A3W5 TCGA-AC-A7VC TCGA-AC-A8OQ TCGA-AN-A041 TCGA-AN-A04A 
       33.04        16.57         0.03         1.12         0.23         2.96 
TCGA-AN-A04C TCGA-AN-A0AL TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0FT TCGA-AN-A0FW 
        1.78         6.51         0.16         0.33         7.04         0.36 
TCGA-AN-A0FZ TCGA-AN-A0XN TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AO-A03M 
        0.33         0.33         0.33         0.33         0.33        61.35 
TCGA-AO-A03P TCGA-AO-A03T TCGA-AO-A0J2 TCGA-AO-A0J4 TCGA-AO-A0J7 TCGA-AO-A0J9 
       95.70        47.87        32.78        52.18        20.32        53.03 
TCGA-AO-A0JB TCGA-AO-A0JD TCGA-AO-A0JL TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A1KS 
       50.70        72.00        55.33        48.36        41.62         0.53 
TCGA-AQ-A04J TCGA-AQ-A1H2 TCGA-AQ-A54N TCGA-AR-A0TP TCGA-AR-A0TT TCGA-AR-A0TV 
       26.93        15.62         2.56       111.32        86.66        42.35 
TCGA-AR-A0TX TCGA-AR-A0U0 TCGA-AR-A1AI TCGA-AR-A1AW TCGA-AR-A24H TCGA-AR-A24L 
       64.83        65.36        61.84        63.62       160.90        94.22 
TCGA-AR-A24Q TCGA-AR-A24S TCGA-AR-A24T TCGA-AR-A24Z TCGA-AR-A251 TCGA-AR-A256 
      104.28        97.84        76.01        79.00        78.48        93.83 
TCGA-AR-A2LL TCGA-AR-A2LO TCGA-B6-A0I2 TCGA-B6-A0I9 TCGA-B6-A0IE TCGA-B6-A0IJ 
       66.15        39.39       143.38        12.13        65.72       176.98 
TCGA-B6-A0IK TCGA-B6-A0IO TCGA-B6-A0RG TCGA-B6-A0RS TCGA-B6-A0RU TCGA-B6-A0WW 
       18.77       110.14        68.45       100.70       131.21        18.35 
TCGA-B6-A0WX TCGA-B6-A1KF TCGA-B6-A1KN TCGA-B6-A402 TCGA-B6-A408 TCGA-BH-A0AV 
       21.47       101.52       139.17        74.99        68.12        59.84 
TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0B6 
       20.45        25.55        39.55        39.16        48.36        56.94 
TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BF TCGA-BH-A0BL TCGA-BH-A0BP TCGA-BH-A0BR 
       37.22        32.02        25.71        44.05        48.69        53.69 
TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0C3 TCGA-BH-A0DE TCGA-BH-A0DI TCGA-BH-A0DK 
       41.75        44.02        48.13        31.17        22.13        13.91 
TCGA-BH-A0DL TCGA-BH-A0DZ TCGA-BH-A0EE TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HX 
       48.23        16.27        31.00        52.96        26.50        27.25 
TCGA-BH-A0HY TCGA-BH-A18L TCGA-BH-A18Q TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A18V 
       50.79        26.66        55.63         7.36        51.39        51.16 
TCGA-BH-A1EN TCGA-BH-A1EY TCGA-BH-A1FC TCGA-BH-A1FH TCGA-BH-A203 TCGA-BH-A42T 
       69.93        17.69       114.15        36.92        38.60        10.52 
TCGA-BH-A5J0 TCGA-BH-A8FZ TCGA-C8-A12L TCGA-C8-A12M TCGA-C8-A12P TCGA-C8-A12Q 
       23.51        18.87        11.93        11.77        11.77        12.66 
TCGA-C8-A12U TCGA-C8-A12W TCGA-C8-A130 TCGA-C8-A132 TCGA-C8-A135 TCGA-C8-A138 
       12.66        12.66         3.16         1.87         1.05         4.08 
TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HN TCGA-C8-A26X 
       10.92        11.34         0.16        12.03         3.25         0.36 
TCGA-C8-A26Y TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A9FZ TCGA-D8-A13Y TCGA-D8-A13Z 
        0.43         9.50        12.20        19.46        11.90        20.88 
TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A145 TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JC 
       13.97        14.17        13.48        14.17        17.49        15.78 
TCGA-D8-A1JE TCGA-D8-A1JK TCGA-D8-A1JP TCGA-D8-A1X6 TCGA-D8-A1X8 TCGA-D8-A1XJ 
       18.90        20.12        21.01        17.79        25.74        21.83 
TCGA-D8-A1XK TCGA-D8-A1XQ TCGA-D8-A1XS TCGA-D8-A1XU TCGA-D8-A1XW TCGA-D8-A1XZ 
       14.50        16.41        16.31        12.99        12.66        15.32 
TCGA-D8-A27F TCGA-D8-A27H TCGA-D8-A27R TCGA-D8-A27W TCGA-E2-A10C TCGA-E2-A14R 
       16.04        13.05        10.09        12.26        40.11        38.60 
TCGA-E2-A14X TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A158 TCGA-E2-A159 
       31.96        18.51        25.41        27.12        14.79        25.05 
TCGA-E2-A15E TCGA-E2-A15G TCGA-E2-A15M TCGA-E2-A1AZ TCGA-E2-A1BD TCGA-E2-A1IE 
       20.71        18.21        11.05        60.53        17.10        38.30 
TCGA-E2-A1IH TCGA-E2-A1L7 TCGA-E2-A1L8 TCGA-E2-A1LE TCGA-E2-A1LH TCGA-E2-A1LI 
       33.73        27.42        39.62        28.90       106.75       102.61 
TCGA-E2-A1LK TCGA-E2-A1LL TCGA-E2-A9RU TCGA-E9-A1N5 TCGA-E9-A1N9 TCGA-E9-A1NA 
        8.75        43.04        12.85        36.82        13.12        36.56 
TCGA-E9-A1ND TCGA-E9-A1NF TCGA-E9-A1R2 TCGA-E9-A1RF TCGA-E9-A1RG TCGA-E9-A1RH 
       12.59        35.24        34.95         6.58        21.27        34.59 
TCGA-E9-A228 TCGA-E9-A22B TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A244 TCGA-E9-A295 
       12.53        22.75        12.89        23.51         0.69         0.72 
TCGA-E9-A2JS TCGA-E9-A3HO TCGA-E9-A3QA TCGA-E9-A5UO TCGA-E9-A5UP TCGA-EW-A1J1 
       29.72        26.07        30.18        13.81        14.40        18.90 
TCGA-EW-A1OZ TCGA-EW-A1P8 TCGA-EW-A1PA TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A1PF 
       40.41         7.86        18.90         6.15        13.94        14.43 
TCGA-EW-A1PH TCGA-EW-A2FR TCGA-EW-A3U0 TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2DD 
       19.96        55.00        17.49         7.40       109.87        75.02 
TCGA-GM-A2DF TCGA-GM-A2DI TCGA-GM-A2DL TCGA-GM-A3XL TCGA-LD-A7W5 TCGA-LL-A5YM 
       70.85        85.15       115.69        69.30         7.10        15.32 
TCGA-LL-A5YN TCGA-LL-A5YP TCGA-LL-A6FQ TCGA-LL-A6FR TCGA-LL-A7T0 TCGA-LL-A8F5 
       14.70        14.79         2.63        16.08        12.36        14.73 
TCGA-LQ-A4E4 TCGA-OL-A5D6 TCGA-OL-A5S0 TCGA-OL-A66I TCGA-OL-A66K TCGA-OL-A6VO 
       27.91        36.30        20.38        23.47        41.92        28.21 
TCGA-PE-A5DC TCGA-S3-A6ZF TCGA-S3-A6ZG TCGA-UL-AAZ6 TCGA-UU-A93S TCGA-Z7-A8R5 
       47.01        16.50        13.12        17.03         3.81       108.07 

$`DEL PEAK 22(11P15.5) WILD-TYPE`
TCGA-3C-AAAU TCGA-3C-AALI TCGA-3C-AALJ TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT0 
      129.14       131.67        42.81        40.14        11.44        48.56 
TCGA-5L-AAT1 TCGA-5T-A9QA TCGA-A1-A0SB TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF 
       48.36         9.96         8.52        14.37        43.43        48.10 
TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI TCGA-A1-A0SJ TCGA-A1-A0SK TCGA-A1-A0SM 
       14.27        47.24        20.88        13.68        31.79         7.96 
TCGA-A1-A0SN TCGA-A1-A0SP TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04Q TCGA-A2-A04R 
       39.32        19.20        18.21       104.81        78.41       121.94 
TCGA-A2-A04V TCGA-A2-A04W TCGA-A2-A04X TCGA-A2-A04Y TCGA-A2-A0CK TCGA-A2-A0CL 
       63.12       101.98        55.43        36.13       136.73        99.12 
TCGA-A2-A0CM TCGA-A2-A0CP TCGA-A2-A0CQ TCGA-A2-A0CR TCGA-A2-A0CS TCGA-A2-A0CT 
       24.79        92.48        88.60       107.93        75.55        75.25 
TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0D4 
        5.19        98.99       107.93        33.76        61.58        25.22 
TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0ER TCGA-A2-A0ES 
      101.72       134.40        80.28       107.61        74.40        72.00 
TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0ST TCGA-A2-A0SV 
       34.29        31.82        61.94        24.72        99.19        27.12 
TCGA-A2-A0SW TCGA-A2-A0SY TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T4 
       44.88        44.28        17.13         8.38        49.84        20.52 
TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YE 
       17.46        18.90        20.75        32.55        25.28        18.21 
TCGA-A2-A0YF TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A1FV 
       50.47        21.67        49.48        19.33        48.46        23.47 
TCGA-A2-A1FW TCGA-A2-A1FX TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G1 TCGA-A2-A1G4 
       17.36        60.72        22.45        20.25        19.20        19.56 
TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25A TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25F 
       16.47        52.47       107.70        17.19        18.15        10.59 
TCGA-A2-A3KC TCGA-A2-A3KD TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XY 
       20.88        39.65        29.98        32.75        49.48        34.98 
TCGA-A2-A3XZ TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S2 
       50.37        24.39        21.30        23.21        26.96        21.14 
TCGA-A2-A4S3 TCGA-A7-A0CD TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0CJ TCGA-A7-A0D9 
       21.90        38.30        34.29        35.47        30.61        37.45 
TCGA-A7-A0DB TCGA-A7-A0DC TCGA-A7-A13G TCGA-A7-A13H TCGA-A7-A26G TCGA-A7-A26H 
       33.11        29.79        23.61        29.56        23.74        23.80 
TCGA-A7-A26J TCGA-A7-A2KD TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3J1 
       20.61        22.32        11.34        10.59        10.29        11.28 
TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A426 TCGA-A7-A4SB TCGA-A7-A4SE TCGA-A7-A4SF 
       13.41        14.70        11.97        13.74        21.17        17.92 
TCGA-A7-A5ZV TCGA-A7-A5ZW TCGA-A7-A5ZX TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06T 
       12.10        10.72        11.05        13.02         1.02        53.06 
TCGA-A8-A06Y TCGA-A8-A076 TCGA-A8-A079 TCGA-A8-A07B TCGA-A8-A07F TCGA-A8-A07I 
       26.01        53.98         9.01        43.00        18.97        14.01 
TCGA-A8-A07J TCGA-A8-A07L TCGA-A8-A07O TCGA-A8-A07P TCGA-A8-A07S TCGA-A8-A07W 
       12.00        32.05         9.99        10.98         7.99         9.99 
TCGA-A8-A07Z TCGA-A8-A082 TCGA-A8-A084 TCGA-A8-A08B TCGA-A8-A08C TCGA-A8-A08G 
       45.07        18.05        15.06        38.01        28.96        19.96 
TCGA-A8-A08O TCGA-A8-A08S TCGA-A8-A08T TCGA-A8-A08Z TCGA-A8-A091 TCGA-A8-A092 
       31.00        33.01       112.08        40.01        33.01        30.97 
TCGA-A8-A093 TCGA-A8-A095 TCGA-A8-A097 TCGA-A8-A099 TCGA-A8-A09D TCGA-A8-A09E 
       17.95        41.98        12.00         9.99        50.04        49.05 
TCGA-A8-A09K TCGA-A8-A09N TCGA-A8-A09Q TCGA-A8-A09R TCGA-A8-A09V TCGA-A8-A09W 
       29.98         1.02        25.02         8.98        15.02         0.99 
TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A7 TCGA-A8-A0A9 
       14.01        12.00        13.02        21.04         0.99        27.02 
TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23G TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2FB 
       38.04         0.95        10.85         5.72         1.48        40.57 
TCGA-AC-A2FF TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A2QI TCGA-AC-A2QJ 
       55.43        38.79        26.04        50.70         0.92         2.27 
TCGA-AC-A3BB TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3TN TCGA-AC-A3W6 
       32.45        16.31        14.83        22.19        14.99        19.79 
TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A5XS TCGA-AC-A62V TCGA-AC-A62X TCGA-AC-A62Y 
       23.24        24.79         1.55        11.44        13.71        17.42 
TCGA-AC-A6IV TCGA-AC-A6IW TCGA-AC-A6IX TCGA-AC-A6NO TCGA-AC-A7VB TCGA-AC-A8OP 
       18.67        13.58        12.26         1.68         8.22        20.19 
TCGA-AC-A8OR TCGA-AC-A8OS TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A046 TCGA-AN-A049 
        1.32         2.30         0.33         0.33         0.33         0.62 
TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AK TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FD 
        1.71         9.96         7.36         0.33         0.33         6.44 
TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FN TCGA-AN-A0FS 
        5.65         7.96         7.00         7.59         7.17         6.28 
TCGA-AN-A0FV TCGA-AN-A0FX TCGA-AN-A0FY TCGA-AN-A0XL TCGA-AN-A0XO TCGA-AN-A0XP 
        0.33         0.33         0.33         0.33        12.33         0.30 
TCGA-AN-A0XR TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03L TCGA-AO-A03N TCGA-AO-A03O 
        0.33         5.33         5.59        80.28        66.77        81.63 
TCGA-AO-A03R TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J3 TCGA-AO-A0J5 TCGA-AO-A0J6 
       68.75        58.95        29.13        21.40        26.04        37.48 
TCGA-AO-A0J8 TCGA-AO-A0JA TCGA-AO-A0JC TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JG 
       22.36        21.53        50.86        76.77        21.37        26.24 
TCGA-AO-A0JI TCGA-AO-A0JJ TCGA-AO-A0JM TCGA-AO-A124 TCGA-AO-A125 TCGA-AO-A126 
       50.24        62.04        71.80       102.58        99.25       108.72 
TCGA-AO-A128 TCGA-AO-A129 TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A12E 
      106.78       108.03        90.58        98.27        64.04        57.30 
TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KQ TCGA-AO-A1KR TCGA-AO-A1KT 
       28.37        14.73        82.62        61.87        70.39        17.79 
TCGA-AQ-A04H TCGA-AQ-A04L TCGA-AQ-A0Y5 TCGA-AQ-A1H3 TCGA-AQ-A54O TCGA-AQ-A7U7 
       24.79       130.09         5.65        32.52        32.91        19.20 
TCGA-AR-A0TQ TCGA-AR-A0TR TCGA-AR-A0TS TCGA-AR-A0TW TCGA-AR-A0TY TCGA-AR-A0TZ 
       73.64         5.26        74.79        98.93        55.86       107.24 
TCGA-AR-A0U1 TCGA-AR-A0U2 TCGA-AR-A0U3 TCGA-AR-A0U4 TCGA-AR-A1AH TCGA-AR-A1AJ 
      101.95        83.87       114.02        85.97        75.55        52.77 
TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AM TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AP 
       51.25        48.82        76.11        43.73        43.56        39.98 
TCGA-AR-A1AQ TCGA-AR-A1AR TCGA-AR-A1AS TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A1AX 
       43.07        17.23        37.81        76.21        61.28        62.14 
TCGA-AR-A1AY TCGA-AR-A24K TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P 
       33.73        50.89        96.89        78.51        84.20         2.76 
TCGA-AR-A24R TCGA-AR-A24U TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A250 
       87.22        53.36        85.35        50.96        83.77        89.00 
TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A255 TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ 
       73.18        72.76        58.92       143.21        20.25        62.86 
TCGA-AR-A2LK TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LQ TCGA-AR-A2LR TCGA-AR-A5QM 
       54.21        52.11        38.17        40.54        20.38        54.74 
TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I5 TCGA-B6-A0IA 
       16.04        20.45        10.59        77.62       149.59       220.90 
TCGA-B6-A0IB TCGA-B6-A0IC TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0IM TCGA-B6-A0IN 
      129.57        50.70       146.50       112.37       126.12        84.59 
TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RL 
      110.93       140.88       211.56       189.01       234.28        81.17 
TCGA-B6-A0RM TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RT 
       78.02       172.96       162.05       102.77       140.48        89.46 
TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0WY TCGA-B6-A0WZ 
      157.41        97.48       188.68        79.63       113.79       129.57 
TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KC 
      129.70       186.48        28.27        68.94        58.88        43.59 
TCGA-B6-A1KI TCGA-B6-A2IU TCGA-B6-A401 TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AU 
       73.51       170.17        85.35       103.63        71.15        24.53 
TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B2 TCGA-BH-A0B7 TCGA-BH-A0B9 TCGA-BH-A0BD 
       28.50        46.95        40.83        56.98        51.68        18.21 
TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BQ TCGA-BH-A0BS 
       24.85        21.70        61.68        35.67        27.19        53.95 
TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0BW TCGA-BH-A0BZ TCGA-BH-A0C7 TCGA-BH-A0DD 
       45.57        49.94        11.67        49.05        42.90        45.83 
TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DO TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0DS 
       23.44        38.01        17.26        15.65         3.22         2.56 
TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E2 
       38.47        67.86        47.41         4.41        15.68        14.30 
TCGA-BH-A0E6 TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EA TCGA-BH-A0EB TCGA-BH-A0EI 
        9.63        44.81        46.19        32.58        24.49        24.43 
TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 
       30.35        10.78        15.16        37.78        35.51        24.56 
TCGA-BH-A0H7 TCGA-BH-A0H9 TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HO TCGA-BH-A0HP 
       23.08        41.00        20.38         5.85         2.50        13.61 
TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 
       36.85        12.89        51.32         5.59        23.93        24.95 
TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A0WA TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18I 
       42.35        44.81        23.05         8.81         2.01         7.23 
TCGA-BH-A18J TCGA-BH-A18K TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18R 
       20.12        90.84        72.56        37.74        30.28        37.55 
TCGA-BH-A18S TCGA-BH-A1EO TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EV 
       66.05        91.99       113.82        82.85        42.28        12.00 
TCGA-BH-A1EW TCGA-BH-A1EX TCGA-BH-A1F0 TCGA-BH-A1F2 TCGA-BH-A1F5 TCGA-BH-A1F6 
       55.69        49.58        25.81        31.53        89.16        97.48 
TCGA-BH-A1F8 TCGA-BH-A1FB TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FJ 
       24.66       120.62        33.17        74.73       122.89        63.35 
TCGA-BH-A1FL TCGA-BH-A1FM TCGA-BH-A1FN TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A201 
       55.00        45.63        72.07       144.59        72.07        28.14 
TCGA-BH-A202 TCGA-BH-A204 TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A28Q 
       26.14        83.31        57.83       130.16        10.65         6.44 
TCGA-BH-A2L8 TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5IZ TCGA-BH-A6R8 TCGA-BH-A6R9 
       20.12       109.28         8.94        18.64         9.63         5.26 
TCGA-BH-A8FY TCGA-BH-A8G0 TCGA-BH-AB28 TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12V 
        9.70        21.76         9.44        11.77        12.66        12.66 
TCGA-C8-A12X TCGA-C8-A12Z TCGA-C8-A131 TCGA-C8-A134 TCGA-C8-A137 TCGA-C8-A1HE 
       12.66         0.39         2.24         1.12         4.11        12.33 
TCGA-C8-A1HI TCGA-C8-A1HL TCGA-C8-A1HM TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A26Z 
       11.28        10.42         2.30         0.30         0.23         8.28 
TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A275 TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A3M8 
        9.67         9.53         0.03         0.99         0.03         0.23 
TCGA-C8-A8HP TCGA-C8-A8HQ TCGA-C8-A8HR TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A146 
       13.02        12.49        13.41        13.25        20.58        21.14 
TCGA-D8-A147 TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JD TCGA-D8-A1JF TCGA-D8-A1JG 
       19.20        16.50        18.71        18.15        12.03        12.03 
TCGA-D8-A1JH TCGA-D8-A1JI TCGA-D8-A1JJ TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JN 
       14.01        18.97        20.09        20.09        19.40        20.38 
TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X7 TCGA-D8-A1X9 
       12.20        13.32        14.70        18.58        16.73        23.90 
TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XD TCGA-D8-A1XF TCGA-D8-A1XG 
       27.58        18.15        12.39        17.16        15.22        14.73 
TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XR TCGA-D8-A1XT TCGA-D8-A1XV 
       19.92        17.69        15.55        15.85         6.35        15.16 
TCGA-D8-A1XY TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 TCGA-D8-A1Y3 TCGA-D8-A27E 
       16.54        15.52         9.93        14.24        14.14        17.42 
TCGA-D8-A27G TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27N 
       13.45        14.43         9.44        16.41        13.48         4.80 
TCGA-D8-A27P TCGA-D8-A27T TCGA-D8-A27V TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 
        0.76        13.08        12.53        33.37        18.51        21.67 
TCGA-D8-A73U TCGA-D8-A73W TCGA-D8-A73X TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A108 
       16.18         8.02        12.10        43.00        34.42        27.52 
TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N 
       46.59        40.41        37.51        28.44        28.87        47.15 
TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14Q TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U 
       44.68        40.96        38.24        33.17        33.30        43.33 
TCGA-E2-A14V TCGA-E2-A14W TCGA-E2-A14Y TCGA-E2-A153 TCGA-E2-A154 TCGA-E2-A155 
       34.26        32.02        28.60        23.24        19.43        21.04 
TCGA-E2-A156 TCGA-E2-A15A TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15F TCGA-E2-A15H 
       23.87        23.34        22.82        17.29        21.63        12.92 
TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15O TCGA-E2-A15P 
       17.42        19.40         9.04        20.58        13.02        19.56 
TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 
       17.06        14.07        14.99        53.62        53.03        33.01 
TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BC TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1II 
       32.35        28.50        16.47        37.41        32.78        33.70 
TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IO TCGA-E2-A1IU 
       28.44        22.65         3.88        22.19        20.98        11.08 
TCGA-E2-A1L6 TCGA-E2-A1L9 TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LG TCGA-E2-A2P5 
       54.18        19.66        24.59        40.47        18.87        16.93 
TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A573 TCGA-E2-A574 
        5.52        15.72         8.28        30.61        34.92        26.56 
TCGA-E2-A576 TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N6 TCGA-E9-A1N8 TCGA-E9-A1NC 
       34.29        34.82        32.88        13.48        12.00        39.55 
TCGA-E9-A1NE TCGA-E9-A1NG TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R3 
       35.77        25.84         9.86        11.90        28.27         2.56 
TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RA TCGA-E9-A1RB 
        6.12         3.02         2.76        21.21        32.09        32.09 
TCGA-E9-A1RC TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RI TCGA-E9-A226 TCGA-E9-A227 
       40.24         1.12        34.65        35.64        34.13        32.05 
TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22D TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A247 
       13.32        39.09        41.03        20.71        17.06        27.22 
TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A2JT TCGA-E9-A3Q9 TCGA-E9-A3X8 
        1.94         7.13        24.56         0.76        18.41        15.72 
TCGA-E9-A54X TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A6HE TCGA-EW-A1IW 
       12.33        23.84        14.70         0.79        15.39        12.20 
TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J5 
       39.72         8.48        18.21        13.25        16.57        15.68 
TCGA-EW-A1J6 TCGA-EW-A1OV TCGA-EW-A1OW TCGA-EW-A1OX TCGA-EW-A1OY TCGA-EW-A1P0 
       28.77        25.94        22.82        29.95        29.85        41.13 
TCGA-EW-A1P1 TCGA-EW-A1P3 TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A1P6 TCGA-EW-A1P7 
       39.78        52.96        29.82        23.11        18.48        30.08 
TCGA-EW-A1PB TCGA-EW-A1PE TCGA-EW-A1PG TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A2FW 
       19.99        10.52        34.55        52.73        25.91        22.09 
TCGA-EW-A3E8 TCGA-EW-A423 TCGA-EW-A424 TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DB 
       34.03        10.16        23.51        59.57       216.76        79.10 
TCGA-GM-A2DC TCGA-GM-A2DH TCGA-GM-A2DK TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A2DO 
       83.34        72.10        86.96       106.06       101.62        85.35 
TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV 
      110.50        38.20        43.73        66.38        72.03        13.55 
TCGA-GM-A5PX TCGA-HN-A2NL TCGA-HN-A2OB TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LD-A66U 
       18.12         2.60        62.43        11.84        11.57        21.24 
TCGA-LD-A74U TCGA-LD-A7W6 TCGA-LD-A9QF TCGA-LL-A440 TCGA-LL-A441 TCGA-LL-A442 
       13.22        13.28        10.62        24.95        11.44        10.95 
TCGA-LL-A50Y TCGA-LL-A5YL TCGA-LL-A5YO TCGA-LL-A6FP TCGA-LL-A73Y TCGA-LL-A73Z 
       25.05        17.06        14.47        22.26        15.68         7.46 
TCGA-LL-A740 TCGA-LL-A7SZ TCGA-LL-A9Q3 TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D7 
       14.50        14.70        14.07        22.39         2.10        58.52 
TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RU TCGA-OL-A5RV TCGA-OL-A5RW TCGA-OL-A5RX 
       31.99        58.62        40.08        34.92        36.36        28.87 
TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A66H TCGA-OL-A66J TCGA-OL-A66L TCGA-OL-A66N 
       24.72        22.32        26.70        65.62        42.77        26.04 
TCGA-OL-A66O TCGA-OL-A66P TCGA-OL-A6VQ TCGA-OL-A6VR TCGA-OL-A97C TCGA-PE-A5DD 
       17.36        14.07        19.73        40.11         8.91        64.21 
TCGA-PE-A5DE TCGA-PL-A8LX TCGA-PL-A8LY TCGA-PL-A8LZ TCGA-S3-A6ZH TCGA-S3-AA0Z 
       86.96         0.16         0.26         9.93        16.93        16.80 
TCGA-S3-AA10 TCGA-S3-AA11 TCGA-S3-AA12 TCGA-S3-AA14 TCGA-S3-AA15 TCGA-S3-AA17 
       15.39        13.84        15.35        14.96        13.84        13.94 
TCGA-W8-A86G TCGA-WT-AB41 TCGA-WT-AB44 TCGA-XX-A899 TCGA-XX-A89A TCGA-Z7-A8R6 
       11.41        52.96        29.03        15.35        16.04       107.05 

  DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE 
                          0.03                           0.03 
  DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE 
                        176.98                         234.28 
  DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE 
                         23.49                          24.69 
[1] "0.0 - 177.0 (23.5)" "0.0 - 234.3 (24.7)"
[1] "hr=" "1.4"
D51V2, continuous
                                vv
clus                             STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  DEL PEAK 22(11P15.5) MUTATED        20       16        0        0       104
  DEL PEAK 22(11P15.5) WILD-TYPE      69       65        8        3       249
                                vv
clus                             STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  DEL PEAK 22(11P15.5) MUTATED          73         0         48         10
  DEL PEAK 22(11P15.5) WILD-TYPE       172         2        102         19
                                vv
clus                             STAGE IIIC STAGE IV STAGE TIS STAGE X
  DEL PEAK 22(11P15.5) MUTATED           21        4         1       5
  DEL PEAK 22(11P15.5) WILD-TYPE         42       16         0       8
D51V3, multiclass
            clus
vv           DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE
  STAGE I                              20                             69
  STAGE IA                             16                             65
  STAGE IB                              0                              8
  STAGE II                              0                              3
  STAGE IIA                           104                            249
  STAGE IIB                            73                            172
  STAGE III                             0                              2
  STAGE IIIA                           48                            102
  STAGE IIIB                           10                             19
  STAGE IIIC                           21                             42
  STAGE IV                              4                             16
  STAGE TIS                             1                              0
  STAGE X                               5                              8
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              T1  T2  T3  T4
  DEL PEAK 22(11P15.5) MUTATED    58 197  32  15
  DEL PEAK 22(11P15.5) WILD-TYPE 214 419  98  25
D51V4, multiclass
    clus
vv   DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE
  T1                           58                            214
  T2                          197                            419
  T3                           32                             98
  T4                           15                             25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              N0  N1  N2  N3
  DEL PEAK 22(11P15.5) MUTATED   142  93  40  24
  DEL PEAK 22(11P15.5) WILD-TYPE 359 257  77  51
D51V5, multiclass
    clus
vv   DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE
  N0                          142                            359
  N1                           93                            257
  N2                           40                             77
  N3                           24                             51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D51V6, binary
                                cls
clus                               0   1
  DEL PEAK 22(11P15.5) MUTATED   262   4
  DEL PEAK 22(11P15.5) WILD-TYPE 617  17
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 22(11P15.5) MUTATED    262    4
  DEL PEAK 22(11P15.5) WILD-TYPE  617   17
   clus
vv  DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE
  0                          262                            617
  1                            4                             17
[1] 2 2
[1] FALSE
D51V7, binary
                                cls
clus                               0   1
  DEL PEAK 22(11P15.5) MUTATED   299   4
  DEL PEAK 22(11P15.5) WILD-TYPE 752   7
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 22(11P15.5) MUTATED    299    4
  DEL PEAK 22(11P15.5) WILD-TYPE  752    7
        clus
vv       DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE
  FEMALE                          299                            752
  MALE                              4                              7
[1] 2 2
[1] FALSE
                                vv
clus                             INFILTRATING CARCINOMA NOS
  DEL PEAK 22(11P15.5) MUTATED                            0
  DEL PEAK 22(11P15.5) WILD-TYPE                          1
                                vv
clus                             INFILTRATING DUCTAL CARCINOMA
  DEL PEAK 22(11P15.5) MUTATED                             244
  DEL PEAK 22(11P15.5) WILD-TYPE                           519
                                vv
clus                             INFILTRATING LOBULAR CARCINOMA
  DEL PEAK 22(11P15.5) MUTATED                               30
  DEL PEAK 22(11P15.5) WILD-TYPE                            162
                                vv
clus                             MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  DEL PEAK 22(11P15.5) MUTATED                     4                     1
  DEL PEAK 22(11P15.5) WILD-TYPE                   2                     3
                                vv
clus                             MIXED HISTOLOGY (PLEASE SPECIFY)
  DEL PEAK 22(11P15.5) MUTATED                                 12
  DEL PEAK 22(11P15.5) WILD-TYPE                               18
                                vv
clus                             MUCINOUS CARCINOMA OTHER  SPECIFY
  DEL PEAK 22(11P15.5) MUTATED                    2             10
  DEL PEAK 22(11P15.5) WILD-TYPE                 15             38
D51V8, multiclass
                                  clus
vv                                 DEL PEAK 22(11P15.5) MUTATED
  INFILTRATING CARCINOMA NOS                                  0
  INFILTRATING DUCTAL CARCINOMA                             244
  INFILTRATING LOBULAR CARCINOMA                             30
  MEDULLARY CARCINOMA                                         4
  METAPLASTIC CARCINOMA                                       1
  MIXED HISTOLOGY (PLEASE SPECIFY)                           12
  MUCINOUS CARCINOMA                                          2
  OTHER  SPECIFY                                             10
                                  clus
vv                                 DEL PEAK 22(11P15.5) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                    1
  INFILTRATING DUCTAL CARCINOMA                               519
  INFILTRATING LOBULAR CARCINOMA                              162
  MEDULLARY CARCINOMA                                           2
  METAPLASTIC CARCINOMA                                         3
  MIXED HISTOLOGY (PLEASE SPECIFY)                             18
  MUCINOUS CARCINOMA                                           15
  OTHER  SPECIFY                                               38
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D51V9, binary
                                cls
clus                               0   1
  DEL PEAK 22(11P15.5) MUTATED    86 217
  DEL PEAK 22(11P15.5) WILD-TYPE 202 557
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 22(11P15.5) MUTATED     86  217
  DEL PEAK 22(11P15.5) WILD-TYPE  202  557
     clus
vv    DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE
  NO                            86                            202
  YES                          217                            557
[1] 2 2
[1] FALSE
D51V10, continuous
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 22(11P15.5) MUTATED                                  0    19
  DEL PEAK 22(11P15.5) WILD-TYPE                                1    41
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 22(11P15.5) MUTATED                          63   190
  DEL PEAK 22(11P15.5) WILD-TYPE                       107   546
D51V11, multiclass
                                  clus
vv                                 DEL PEAK 22(11P15.5) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            0
  ASIAN                                                      19
  BLACK OR AFRICAN AMERICAN                                  63
  WHITE                                                     190
                                  clus
vv                                 DEL PEAK 22(11P15.5) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              1
  ASIAN                                                        41
  BLACK OR AFRICAN AMERICAN                                   107
  WHITE                                                       546
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D51V12, binary
                                cls
clus                               0   1
  DEL PEAK 22(11P15.5) MUTATED     7 239
  DEL PEAK 22(11P15.5) WILD-TYPE  31 619
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 22(11P15.5) MUTATED      7  239
  DEL PEAK 22(11P15.5) WILD-TYPE   31  619
                        clus
vv                       DEL PEAK 22(11P15.5) MUTATED
  HISPANIC OR LATINO                                7
  NOT HISPANIC OR LATINO                          239
                        clus
vv                       DEL PEAK 22(11P15.5) WILD-TYPE
  HISPANIC OR LATINO                                 31
  NOT HISPANIC OR LATINO                            619
[1] 2 2
[1] FALSE

Clustering(52) Variable = DEL PEAK 23(11Q13.1) MUTATION ANALYSIS
D52V1, survival
                                sevent
clus2                              0   1
  DEL PEAK 23(11Q13.1) MUTATED   205  29
  DEL PEAK 23(11Q13.1) WILD-TYPE 711  99
  DEL PEAK 23(11Q13.1) MUTATED DEL PEAK 23(11Q13.1) WILD-TYPE 
                           234                            810 
  DEL PEAK 23(11Q13.1) MUTATED DEL PEAK 23(11Q13.1) WILD-TYPE 
                            29                             99 
$`DEL PEAK 23(11Q13.1) MUTATED`
TCGA-3C-AAAU TCGA-3C-AALJ TCGA-5T-A9QA TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SJ 
      129.14        42.81         9.96        14.37        43.43        13.68 
TCGA-A1-A0SO TCGA-A2-A04V TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CX 
       28.01        63.12        99.12        24.79       114.81        56.81 
TCGA-A2-A0D4 TCGA-A2-A0ET TCGA-A2-A0SX TCGA-A2-A0T3 TCGA-A2-A0T4 TCGA-A2-A0YT 
       25.22        35.05        50.43        49.84        20.52        23.77 
TCGA-A2-A1FX TCGA-A2-A1G4 TCGA-A2-A25B TCGA-A2-A3XS TCGA-A2-A3XX TCGA-A2-A3Y0 
       60.72        19.56        42.44        33.93        47.31        38.37 
TCGA-A7-A0CE TCGA-A7-A0DC TCGA-A7-A13D TCGA-A7-A13E TCGA-A7-A13F TCGA-A7-A26E 
       35.31        29.79        31.73        20.19        25.15        31.36 
TCGA-A7-A26J TCGA-A7-A3IZ TCGA-A7-A4SD TCGA-A8-A06O TCGA-A8-A06Q TCGA-A8-A06T 
       20.61        10.59        14.50        13.02         1.02        53.06 
TCGA-A8-A06Z TCGA-A8-A079 TCGA-A8-A07B TCGA-A8-A07W TCGA-A8-A082 TCGA-A8-A086 
        1.02         9.01        43.00         9.99        18.05        13.02 
TCGA-A8-A08G TCGA-A8-A08J TCGA-A8-A08R TCGA-A8-A08S TCGA-A8-A08X TCGA-A8-A091 
       19.96        37.05         0.99        33.01        43.00        33.01 
TCGA-A8-A093 TCGA-A8-A097 TCGA-A8-A09B TCGA-A8-A09K TCGA-A8-A09R TCGA-A8-A09T 
       17.95        12.00        12.00        29.98         8.98        19.04 
TCGA-A8-A0A2 TCGA-A8-A0A6 TCGA-AC-A23E TCGA-AC-A2BM TCGA-AC-A2FM TCGA-AC-A2QH 
       19.04        21.04         2.37        99.35        26.04        33.04 
TCGA-AC-A3HN TCGA-AC-A6IV TCGA-AC-A6IW TCGA-AC-A6IX TCGA-AC-A7VC TCGA-AN-A03Y 
       16.31        18.67        13.58        12.26         0.03         0.33 
TCGA-AN-A04A TCGA-AN-A0FT TCGA-AN-A0FZ TCGA-AN-A0XS TCGA-AN-A0XU TCGA-AN-A0XW 
        2.96         7.04         0.33         0.33         0.33         5.59 
TCGA-AO-A03M TCGA-AO-A0J3 TCGA-AO-A0J7 TCGA-AO-A0J9 TCGA-AO-A0JD TCGA-AO-A0JG 
       61.35        21.40        20.32        53.03        72.00        26.24 
TCGA-AO-A0JL TCGA-AO-A124 TCGA-AO-A12E TCGA-AO-A1KT TCGA-AQ-A04J TCGA-AQ-A1H2 
       55.33       102.58        57.30        17.79        26.93        15.62 
TCGA-AQ-A54N TCGA-AR-A0TV TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A0U2 TCGA-AR-A0U3 
        2.56        42.35        65.36       101.95        83.87       114.02 
TCGA-AR-A1AK TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A24H TCGA-AR-A24L TCGA-AR-A24R 
       51.25        61.28        63.62       160.90        94.22        87.22 
TCGA-AR-A24V TCGA-AR-A24Z TCGA-AR-A2LK TCGA-AR-A2LO TCGA-B6-A0I9 TCGA-B6-A0IK 
       85.35        79.00        54.21        39.39        12.13        18.77 
TCGA-B6-A0IM TCGA-B6-A0RL TCGA-B6-A0RU TCGA-B6-A0WX TCGA-B6-A1KF TCGA-B6-A1KN 
      126.12        81.17       131.21        21.47       101.52       139.17 
TCGA-B6-A402 TCGA-B6-A40B TCGA-BH-A0AV TCGA-BH-A0B5 TCGA-BH-A0BA TCGA-BH-A0BD 
       74.99       103.63        59.84        48.36        37.22        18.21 
TCGA-BH-A0BL TCGA-BH-A0C1 TCGA-BH-A0C3 TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DL 
       44.05        44.02        48.13        45.83        31.17        48.23 
TCGA-BH-A0E2 TCGA-BH-A0E6 TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0GZ TCGA-BH-A0H0 
       14.30         9.63        31.00        24.43        10.78        15.16 
TCGA-BH-A0H7 TCGA-BH-A0HA TCGA-BH-A0HX TCGA-BH-A18I TCGA-BH-A18L TCGA-BH-A18P 
       23.08        52.96        27.25         7.23        26.66        30.28 
TCGA-BH-A18R TCGA-BH-A1EN TCGA-BH-A1ES TCGA-BH-A1EW TCGA-BH-A1F8 TCGA-BH-A201 
       37.55        69.93       113.82        55.69        24.66        28.14 
TCGA-BH-A28Q TCGA-BH-A42T TCGA-BH-A5IZ TCGA-BH-A8FY TCGA-C8-A12M TCGA-C8-A12Q 
        6.44        10.52        18.64         9.70        11.77        12.66 
TCGA-C8-A12U TCGA-C8-A12W TCGA-C8-A138 TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HI 
       12.66        12.66         4.08        10.92        11.34        11.28 
TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HL TCGA-C8-A26W TCGA-C8-A26Y TCGA-C8-A26Z 
        0.16        12.03        10.42         0.23         0.43         8.28 
TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-C8-A8HP TCGA-C8-A8HQ 
       12.20         0.99         0.03         0.23        13.02        12.49 
TCGA-D8-A13Z TCGA-D8-A145 TCGA-D8-A147 TCGA-D8-A1J8 TCGA-D8-A1JE TCGA-D8-A1JI 
       20.88        13.48        19.20        14.17        18.90        18.97 
TCGA-D8-A1X6 TCGA-D8-A1XF TCGA-D8-A1XS TCGA-D8-A1XU TCGA-D8-A1XZ TCGA-D8-A1Y0 
       17.79        15.22        16.31        12.99        15.32        15.52 
TCGA-D8-A27G TCGA-D8-A27W TCGA-E2-A105 TCGA-E2-A109 TCGA-E2-A10C TCGA-E2-A14O 
       13.45        12.26        43.00        46.59        40.11        44.68 
TCGA-E2-A14R TCGA-E2-A14V TCGA-E2-A15E TCGA-E2-A15G TCGA-E2-A15O TCGA-E2-A15R 
       38.60        34.26        20.71        18.21        13.02        17.06 
TCGA-E2-A15T TCGA-E2-A1BC TCGA-E2-A1BD TCGA-E2-A1IH TCGA-E2-A1IU TCGA-E2-A1L8 
       14.99        16.47        17.10        33.73        11.08        39.62 
TCGA-E2-A2P6 TCGA-E2-A573 TCGA-E2-A576 TCGA-E2-A9RU TCGA-E9-A1N5 TCGA-E9-A1N9 
        5.52        34.92        34.29        12.85        36.82        13.12 
TCGA-E9-A1R7 TCGA-E9-A1RI TCGA-E9-A22B TCGA-E9-A2JS TCGA-E9-A5UP TCGA-EW-A1IW 
       21.21        35.64        22.75        29.72        14.40        12.20 
TCGA-EW-A1J5 TCGA-EW-A1OY TCGA-EW-A1OZ TCGA-EW-A1P4 TCGA-EW-A1PC TCGA-EW-A1PF 
       15.68        29.85        40.41        29.82         6.15        14.43 
TCGA-EW-A2FR TCGA-EW-A423 TCGA-GM-A2DI TCGA-GM-A2DO TCGA-GM-A3NW TCGA-GM-A3XL 
       55.00        10.16        85.15        85.35       110.50        69.30 
TCGA-LD-A7W5 TCGA-LL-A5YM TCGA-LL-A5YO TCGA-LL-A5YP TCGA-LL-A6FR TCGA-LL-A7SZ 
        7.10        15.32        14.47        14.79        16.08        14.70 
TCGA-LL-A7T0 TCGA-LL-A8F5 TCGA-LQ-A4E4 TCGA-OL-A5D6 TCGA-OL-A5S0 TCGA-OL-A66J 
       12.36        14.73        27.91        36.30        20.38        65.62 
TCGA-OL-A66K TCGA-OL-A66O TCGA-PL-A8LX TCGA-S3-A6ZG TCGA-S3-A6ZH TCGA-Z7-A8R5 
       41.92        17.36         0.16        13.12        16.93       108.07 

$`DEL PEAK 23(11Q13.1) WILD-TYPE`
TCGA-3C-AALI TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT0 TCGA-5L-AAT1 TCGA-A1-A0SB 
      131.67        40.14        11.44        48.56        48.36         8.52 
TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI TCGA-A1-A0SK TCGA-A1-A0SM 
       48.10        14.27        47.24        20.88        31.79         7.96 
TCGA-A1-A0SN TCGA-A1-A0SP TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04P TCGA-A2-A04Q 
       39.32        19.20        18.21       104.81        18.02        78.41 
TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04W TCGA-A2-A04X TCGA-A2-A04Y 
      121.94        73.84        87.25       101.98        55.43        36.13 
TCGA-A2-A0CK TCGA-A2-A0CP TCGA-A2-A0CQ TCGA-A2-A0CR TCGA-A2-A0CS TCGA-A2-A0CT 
      136.73        92.48        88.60       107.93        75.55        75.25 
TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D2 
        5.19        98.99       107.93        67.33        34.55        33.76 
TCGA-A2-A0D3 TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0EQ 
       61.58       101.72       134.40        80.28       107.61        79.76 
TCGA-A2-A0ER TCGA-A2-A0ES TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX 
       74.40        72.00        34.29        31.82        61.94        24.72 
TCGA-A2-A0EY TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0SY 
       63.29        99.19        54.64        27.12        44.88        44.28 
TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0T7 
       17.52        17.13         8.38        17.46        18.90        20.75 
TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YE TCGA-A2-A0YF TCGA-A2-A0YG TCGA-A2-A0YH 
       32.55        25.28        18.21        50.47        21.90        21.67 
TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A0YM TCGA-A2-A1FV 
       49.48        18.61        19.33        48.46        31.73        23.47 
TCGA-A2-A1FW TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G1 TCGA-A2-A1G6 TCGA-A2-A259 
       17.36        22.45        20.25        19.20        16.47        52.47 
TCGA-A2-A25A TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC 
      107.70        17.19        18.15       105.34        10.59        20.88 
TCGA-A2-A3KD TCGA-A2-A3XT TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XY 
       39.65        83.01        29.98        32.75        49.48        34.98 
TCGA-A2-A3XZ TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S1 
       50.37         7.30        24.39        21.30        23.21        26.96 
TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CD TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0CJ 
       21.14        21.90        38.30        34.29        35.47        30.61 
TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A13G TCGA-A7-A13H TCGA-A7-A26F 
       37.45        35.67        33.11        23.61        29.56        24.26 
TCGA-A7-A26G TCGA-A7-A26H TCGA-A7-A26I TCGA-A7-A2KD TCGA-A7-A3IY TCGA-A7-A3J0 
       23.74        23.80        21.73        22.32        11.34        10.29 
TCGA-A7-A3J1 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A426 TCGA-A7-A4SA TCGA-A7-A4SB 
       11.28        13.41        14.70        11.97        14.93        13.74 
TCGA-A7-A4SE TCGA-A7-A4SF TCGA-A7-A56D TCGA-A7-A5ZV TCGA-A7-A5ZW TCGA-A7-A5ZX 
       21.17        17.92        14.73        12.10        10.72        11.05 
TCGA-A7-A6VV TCGA-A7-A6VW TCGA-A7-A6VX TCGA-A7-A6VY TCGA-A8-A06P TCGA-A8-A06R 
       10.29         9.37        10.42         8.75        13.02        17.98 
TCGA-A8-A06U TCGA-A8-A06X TCGA-A8-A06Y TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A07E 
       29.03        31.00        26.01        17.03        53.98        19.99 
TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07L TCGA-A8-A07O 
       18.97        18.97        14.01        12.00        32.05         9.99 
TCGA-A8-A07P TCGA-A8-A07R TCGA-A8-A07S TCGA-A8-A07U TCGA-A8-A07Z TCGA-A8-A084 
       10.98         8.98         7.99        24.99        45.07        15.06 
TCGA-A8-A085 TCGA-A8-A08A TCGA-A8-A08B TCGA-A8-A08C TCGA-A8-A08F TCGA-A8-A08I 
       36.95         0.99        38.01        28.96        33.01        12.00 
TCGA-A8-A08L TCGA-A8-A08O TCGA-A8-A08P TCGA-A8-A08T TCGA-A8-A08Z TCGA-A8-A092 
        9.99        31.00        31.00       112.08        40.01        30.97 
TCGA-A8-A095 TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09C TCGA-A8-A09D TCGA-A8-A09E 
       41.98         9.99         9.99         1.02        50.04        49.05 
TCGA-A8-A09I TCGA-A8-A09M TCGA-A8-A09N TCGA-A8-A09Q TCGA-A8-A09V TCGA-A8-A09W 
       45.07        33.07         1.02        25.02        15.02         0.99 
TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0A4 TCGA-A8-A0A7 TCGA-A8-A0A9 TCGA-A8-A0AB 
       14.01        12.00        13.02         0.99        27.02        17.03 
TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23G TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2BK 
       38.04         0.95        10.85         5.72         1.48        38.53 
TCGA-AC-A2FB TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FO TCGA-AC-A2QI 
       40.57        55.43        36.99        38.79        50.70         0.92 
TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3TN TCGA-AC-A3W5 
        2.27        32.45        14.83        22.19        14.99        16.57 
TCGA-AC-A3W6 TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A5XS TCGA-AC-A62V TCGA-AC-A62X 
       19.79        23.24        24.79         1.55        11.44        13.71 
TCGA-AC-A62Y TCGA-AC-A6NO TCGA-AC-A7VB TCGA-AC-A8OP TCGA-AC-A8OQ TCGA-AC-A8OR 
       17.42         1.68         8.22        20.19         1.12         1.32 
TCGA-AC-A8OS TCGA-AN-A03X TCGA-AN-A041 TCGA-AN-A046 TCGA-AN-A049 TCGA-AN-A04C 
        2.30         0.33         0.23         0.33         0.62         1.78 
TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AK TCGA-AN-A0AL TCGA-AN-A0AM TCGA-AN-A0AR 
        1.71         9.96         7.36         6.51         0.16         0.33 
TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FK 
        0.33         0.33         6.44         5.65         7.96         7.00 
TCGA-AN-A0FL TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FX 
        7.59         7.17         6.28         0.33         0.36         0.33 
TCGA-AN-A0FY TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XR 
        0.33         0.33         0.33        12.33         0.30         0.33 
TCGA-AN-A0XT TCGA-AN-A0XV TCGA-AO-A03L TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03P 
        0.33         5.33        80.28        66.77        81.63        95.70 
TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J2 TCGA-AO-A0J4 
       68.75        47.87        58.95        29.13        32.78        52.18 
TCGA-AO-A0J5 TCGA-AO-A0J6 TCGA-AO-A0J8 TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JC 
       26.04        37.48        22.36        21.53        50.70        50.86 
TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JI TCGA-AO-A0JJ TCGA-AO-A0JM TCGA-AO-A125 
       76.77        21.37        50.24        62.04        71.80        99.25 
TCGA-AO-A126 TCGA-AO-A128 TCGA-AO-A129 TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12D 
      108.72       106.78       108.03        90.58        98.27        64.04 
TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KQ 
       48.36        41.62        28.37        14.73        82.62        61.87 
TCGA-AO-A1KR TCGA-AO-A1KS TCGA-AQ-A04H TCGA-AQ-A04L TCGA-AQ-A0Y5 TCGA-AQ-A1H3 
       70.39         0.53        24.79       130.09         5.65        32.52 
TCGA-AQ-A54O TCGA-AQ-A7U7 TCGA-AR-A0TP TCGA-AR-A0TQ TCGA-AR-A0TR TCGA-AR-A0TS 
       32.91        19.20       111.32        73.64         5.26        74.79 
TCGA-AR-A0TT TCGA-AR-A0TW TCGA-AR-A0TX TCGA-AR-A0TY TCGA-AR-A0TZ TCGA-AR-A0U4 
       86.66        98.93        64.83        55.86       107.24        85.97 
TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AL TCGA-AR-A1AM TCGA-AR-A1AN 
       75.55        61.84        52.77        48.82        76.11        43.73 
TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AQ TCGA-AR-A1AR TCGA-AR-A1AS TCGA-AR-A1AU 
       43.56        39.98        43.07        17.23        37.81        76.21 
TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24K TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O 
       62.14        33.73        50.89        96.89        78.51        84.20 
TCGA-AR-A24P TCGA-AR-A24Q TCGA-AR-A24S TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24W 
        2.76       104.28        97.84        76.01        53.36        50.96 
TCGA-AR-A24X TCGA-AR-A250 TCGA-AR-A251 TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A255 
       83.77        89.00        78.48        73.18        72.76        58.92 
TCGA-AR-A256 TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LL TCGA-AR-A2LM 
       93.83       143.21        20.25        62.86        66.15        52.11 
TCGA-AR-A2LN TCGA-AR-A2LQ TCGA-AR-A2LR TCGA-AR-A5QM TCGA-AR-A5QN TCGA-AR-A5QP 
       38.17        40.54        20.38        54.74        16.04        20.45 
TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0IA TCGA-B6-A0IB 
       10.59        77.62       143.38       149.59       220.90       129.57 
TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IN 
       50.70        65.72       146.50       112.37       176.98        84.59 
TCGA-B6-A0IO TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RH 
      110.14       110.93       140.88       211.56        68.45       189.01 
TCGA-B6-A0RI TCGA-B6-A0RM TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RP TCGA-B6-A0RQ 
      234.28        78.02       172.96       162.05       102.77       140.48 
TCGA-B6-A0RS TCGA-B6-A0RT TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WV 
      100.70        89.46       157.41        97.48       188.68        79.63 
TCGA-B6-A0WW TCGA-B6-A0WY TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 
       18.35       113.79       129.57       129.70       186.48        28.27 
TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KC TCGA-B6-A1KI TCGA-B6-A2IU TCGA-B6-A401 
       68.94        58.88        43.59        73.51       170.17        85.35 
TCGA-B6-A408 TCGA-B6-A40C TCGA-BH-A0AU TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0AZ 
       68.12        71.15        24.53        20.45        25.55        28.50 
TCGA-BH-A0B0 TCGA-BH-A0B2 TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B6 TCGA-BH-A0B7 
       46.95        40.83        39.55        39.16        56.94        56.98 
TCGA-BH-A0B9 TCGA-BH-A0BC TCGA-BH-A0BF TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BM 
       51.68        32.02        25.71        24.85        21.70        61.68 
TCGA-BH-A0BO TCGA-BH-A0BP TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BT 
       35.67        48.69        27.19        53.69        53.95        45.57 
TCGA-BH-A0BV TCGA-BH-A0BW TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C7 TCGA-BH-A0DG 
       49.94        11.67        49.05        41.75        42.90        23.44 
TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DO TCGA-BH-A0DP TCGA-BH-A0DQ 
       38.01        22.13        13.91        17.26        15.65         3.22 
TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E0 
        2.56        38.47        67.86        47.41        16.27         4.41 
TCGA-BH-A0E1 TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EA TCGA-BH-A0EB TCGA-BH-A0GY 
       15.68        44.81        46.19        32.58        24.49        30.35 
TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H9 TCGA-BH-A0HB TCGA-BH-A0HI 
       37.78        35.51        24.56        41.00        26.50        20.38 
TCGA-BH-A0HK TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW 
        5.85         2.50        13.61        36.85        12.89        51.32 
TCGA-BH-A0HY TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 
       50.79         5.59        23.93        24.95        42.35        44.81 
TCGA-BH-A0WA TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18J TCGA-BH-A18K TCGA-BH-A18M 
       23.05         8.81         2.01        20.12        90.84        72.56 
TCGA-BH-A18N TCGA-BH-A18Q TCGA-BH-A18S TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A18V 
       37.74        55.63        66.05         7.36        51.39        51.16 
TCGA-BH-A1EO TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EX TCGA-BH-A1EY 
       91.99        82.85        42.28        12.00        49.58        17.69 
TCGA-BH-A1F0 TCGA-BH-A1F2 TCGA-BH-A1F5 TCGA-BH-A1F6 TCGA-BH-A1FB TCGA-BH-A1FC 
       25.81        31.53        89.16        97.48       120.62       114.15 
TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL 
       33.17        74.73       122.89        36.92        63.35        55.00 
TCGA-BH-A1FM TCGA-BH-A1FN TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A202 TCGA-BH-A203 
       45.63        72.07       144.59        72.07        26.14        38.60 
TCGA-BH-A204 TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A2L8 TCGA-BH-A42U 
       83.31        57.83       130.16        10.65        20.12       109.28 
TCGA-BH-A42V TCGA-BH-A5J0 TCGA-BH-A6R8 TCGA-BH-A6R9 TCGA-BH-A8FZ TCGA-BH-A8G0 
        8.94        23.51         9.63         5.26        18.87        21.76 
TCGA-BH-AB28 TCGA-C8-A12L TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12V 
        9.44        11.93        11.77        12.66        11.77        12.66 
TCGA-C8-A12X TCGA-C8-A12Z TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A132 TCGA-C8-A134 
       12.66         0.39         3.16         2.24         1.87         1.12 
TCGA-C8-A135 TCGA-C8-A137 TCGA-C8-A1HE TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A26V 
        1.05         4.11        12.33         2.30         3.25         0.30 
TCGA-C8-A26X TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A8HR 
        0.36         9.67         9.53         0.03         9.50        13.41 
TCGA-C8-A9FZ TCGA-D8-A13Y TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A143 
       19.46        11.90        13.25        20.58        13.97        14.17 
TCGA-D8-A146 TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JD 
       21.14        17.49        16.50        18.71        15.78        18.15 
TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JH TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JL 
       12.03        12.03        14.01        20.09        20.12        20.09 
TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1JP TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU 
       19.40        20.38        21.01        12.20        13.32        14.70 
TCGA-D8-A1X5 TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XB 
       18.58        16.73        25.74        23.90        27.58        18.15 
TCGA-D8-A1XC TCGA-D8-A1XD TCGA-D8-A1XG TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XL 
       12.39        17.16        14.73        21.83        14.50        19.92 
TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XQ TCGA-D8-A1XR TCGA-D8-A1XT TCGA-D8-A1XV 
       17.69        15.55        16.41        15.85         6.35        15.16 
TCGA-D8-A1XW TCGA-D8-A1XY TCGA-D8-A1Y1 TCGA-D8-A1Y2 TCGA-D8-A1Y3 TCGA-D8-A27E 
       12.66        16.54         9.93        14.24        14.14        17.42 
TCGA-D8-A27F TCGA-D8-A27H TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27M 
       16.04        13.05        14.43         9.44        16.41        13.48 
TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27R TCGA-D8-A27T TCGA-D8-A27V TCGA-D8-A3Z5 
        4.80         0.76        10.09        13.08        12.53        33.37 
TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-D8-A73U TCGA-D8-A73W TCGA-D8-A73X TCGA-E2-A107 
       18.51        21.67        16.18         8.02        12.10        34.42 
TCGA-E2-A108 TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N 
       27.52        40.41        37.51        28.44        28.87        47.15 
TCGA-E2-A14P TCGA-E2-A14Q TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14W 
       40.96        38.24        33.17        33.30        43.33        32.02 
TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A153 
       31.96        28.60        18.51        25.41        27.12        23.24 
TCGA-E2-A154 TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A158 TCGA-E2-A159 TCGA-E2-A15A 
       19.43        21.04        23.87        14.79        25.05        23.34 
TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15F TCGA-E2-A15H TCGA-E2-A15I TCGA-E2-A15J 
       22.82        17.29        21.63        12.92        17.42        19.40 
TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15P TCGA-E2-A15S TCGA-E2-A1AZ 
        9.04        20.58        11.05        19.56        14.07        60.53 
TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1IE 
       53.62        53.03        33.01        32.35        28.50        38.30 
TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL 
       37.41        32.78        33.70        28.44        22.65         3.88 
TCGA-E2-A1IN TCGA-E2-A1IO TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L9 TCGA-E2-A1LA 
       22.19        20.98        54.18        27.42        19.66        24.59 
TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LG TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK 
       40.47        28.90        18.87       106.75       102.61         8.75 
TCGA-E2-A1LL TCGA-E2-A2P5 TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A574 
       43.04        16.93        15.72         8.28        30.61        26.56 
TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N6 TCGA-E9-A1N8 TCGA-E9-A1NA TCGA-E9-A1NC 
       34.82        32.88        13.48        12.00        36.56        39.55 
TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1NI TCGA-E9-A1QZ 
       12.59        35.77        35.24        25.84         9.86        11.90 
TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R6 
       28.27        34.95         2.56         6.12         3.02         2.76 
TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RF 
       32.09        32.09        40.24         1.12        34.65         6.58 
TCGA-E9-A1RG TCGA-E9-A1RH TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 
       21.27        34.59        34.13        32.05        12.53        13.32 
TCGA-E9-A22A TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A22H TCGA-E9-A243 
       39.09        41.03        12.89        23.51        20.71        17.06 
TCGA-E9-A244 TCGA-E9-A247 TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A295 
        0.69        27.22         1.94         7.13        24.56         0.72 
TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3QA TCGA-E9-A3X8 TCGA-E9-A54X 
        0.76        26.07        18.41        30.18        15.72        12.33 
TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UO TCGA-E9-A6HE TCGA-EW-A1IX 
       23.84        14.70         0.79        13.81        15.39        39.72 
TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J6 
        8.48        18.21        18.90        13.25        16.57        28.77 
TCGA-EW-A1OV TCGA-EW-A1OW TCGA-EW-A1OX TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P3 
       25.94        22.82        29.95        41.13        39.78        52.96 
TCGA-EW-A1P5 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1P8 TCGA-EW-A1PA TCGA-EW-A1PB 
       23.11        18.48        30.08         7.86        18.90        19.99 
TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FS TCGA-EW-A2FV 
       13.94        10.52        34.55        19.96        52.73        25.91 
TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A3U0 TCGA-EW-A424 TCGA-GI-A2C8 TCGA-GI-A2C9 
       22.09        34.03        17.49        23.51         7.40       109.87 
TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DC TCGA-GM-A2DD TCGA-GM-A2DF 
       59.57       216.76        79.10        83.34        75.02        70.85 
TCGA-GM-A2DH TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A3NY 
       72.10        86.96       115.69       106.06       101.62        38.20 
TCGA-GM-A3XG TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2NL 
       43.73        66.38        72.03        13.55        18.12         2.60 
TCGA-HN-A2OB TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LD-A66U TCGA-LD-A74U TCGA-LD-A7W6 
       62.43        11.84        11.57        21.24        13.22        13.28 
TCGA-LD-A9QF TCGA-LL-A440 TCGA-LL-A441 TCGA-LL-A442 TCGA-LL-A50Y TCGA-LL-A5YL 
       10.62        24.95        11.44        10.95        25.05        17.06 
TCGA-LL-A5YN TCGA-LL-A6FP TCGA-LL-A6FQ TCGA-LL-A73Y TCGA-LL-A73Z TCGA-LL-A740 
       14.70        22.26         2.63        15.68         7.46        14.50 
TCGA-LL-A9Q3 TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5DA 
       14.07        22.39         2.10        58.52        31.99        58.62 
TCGA-OL-A5RU TCGA-OL-A5RV TCGA-OL-A5RW TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5RZ 
       40.08        34.92        36.36        28.87        24.72        22.32 
TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66L TCGA-OL-A66N TCGA-OL-A66P TCGA-OL-A6VO 
       26.70        23.47        42.77        26.04        14.07        28.21 
TCGA-OL-A6VQ TCGA-OL-A6VR TCGA-OL-A97C TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE 
       19.73        40.11         8.91        47.01        64.21        86.96 
TCGA-PL-A8LY TCGA-PL-A8LZ TCGA-S3-A6ZF TCGA-S3-AA0Z TCGA-S3-AA10 TCGA-S3-AA11 
        0.26         9.93        16.50        16.80        15.39        13.84 
TCGA-S3-AA12 TCGA-S3-AA14 TCGA-S3-AA15 TCGA-S3-AA17 TCGA-UL-AAZ6 TCGA-UU-A93S 
       15.35        14.96        13.84        13.94        17.03         3.81 
TCGA-W8-A86G TCGA-WT-AB41 TCGA-WT-AB44 TCGA-XX-A899 TCGA-XX-A89A TCGA-Z7-A8R6 
       11.41        52.96        29.03        15.35        16.04       107.05 

  DEL PEAK 23(11Q13.1) MUTATED DEL PEAK 23(11Q13.1) WILD-TYPE 
                          0.03                           0.03 
  DEL PEAK 23(11Q13.1) MUTATED DEL PEAK 23(11Q13.1) WILD-TYPE 
                        160.90                         234.28 
  DEL PEAK 23(11Q13.1) MUTATED DEL PEAK 23(11Q13.1) WILD-TYPE 
                         20.96                          24.90 
[1] "0.0 - 160.9 (21.0)" "0.0 - 234.3 (24.9)"
[1] "hr=" "1.2"
D52V2, continuous
                                vv
clus                             STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  DEL PEAK 23(11Q13.1) MUTATED        16       16        1        0        75
  DEL PEAK 23(11Q13.1) WILD-TYPE      73       65        7        3       278
                                vv
clus                             STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  DEL PEAK 23(11Q13.1) MUTATED          60         1         38         12
  DEL PEAK 23(11Q13.1) WILD-TYPE       185         1        112         17
                                vv
clus                             STAGE IIIC STAGE IV STAGE TIS STAGE X
  DEL PEAK 23(11Q13.1) MUTATED           11        4         0       2
  DEL PEAK 23(11Q13.1) WILD-TYPE         52       16         1      11
D52V3, multiclass
            clus
vv           DEL PEAK 23(11Q13.1) MUTATED DEL PEAK 23(11Q13.1) WILD-TYPE
  STAGE I                              16                             73
  STAGE IA                             16                             65
  STAGE IB                              1                              7
  STAGE II                              0                              3
  STAGE IIA                            75                            278
  STAGE IIB                            60                            185
  STAGE III                             1                              1
  STAGE IIIA                           38                            112
  STAGE IIIB                           12                             17
  STAGE IIIC                           11                             52
  STAGE IV                              4                             16
  STAGE TIS                             0                              1
  STAGE X                               2                             11
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              T1  T2  T3  T4
  DEL PEAK 23(11Q13.1) MUTATED    55 135  32  15
  DEL PEAK 23(11Q13.1) WILD-TYPE 217 481  98  25
D52V4, multiclass
    clus
vv   DEL PEAK 23(11Q13.1) MUTATED DEL PEAK 23(11Q13.1) WILD-TYPE
  T1                           55                            217
  T2                          135                            481
  T3                           32                             98
  T4                           15                             25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              N0  N1  N2  N3
  DEL PEAK 23(11Q13.1) MUTATED   104  84  30  13
  DEL PEAK 23(11Q13.1) WILD-TYPE 397 266  87  62
D52V5, multiclass
    clus
vv   DEL PEAK 23(11Q13.1) MUTATED DEL PEAK 23(11Q13.1) WILD-TYPE
  N0                          104                            397
  N1                           84                            266
  N2                           30                             87
  N3                           13                             62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D52V6, binary
                                cls
clus                               0   1
  DEL PEAK 23(11Q13.1) MUTATED   195   4
  DEL PEAK 23(11Q13.1) WILD-TYPE 684  17
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 23(11Q13.1) MUTATED    195    4
  DEL PEAK 23(11Q13.1) WILD-TYPE  684   17
   clus
vv  DEL PEAK 23(11Q13.1) MUTATED DEL PEAK 23(11Q13.1) WILD-TYPE
  0                          195                            684
  1                            4                             17
[1] 2 2
[1] FALSE
D52V7, binary
                                cls
clus                               0   1
  DEL PEAK 23(11Q13.1) MUTATED   235   3
  DEL PEAK 23(11Q13.1) WILD-TYPE 816   8
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 23(11Q13.1) MUTATED    235    3
  DEL PEAK 23(11Q13.1) WILD-TYPE  816    8
        clus
vv       DEL PEAK 23(11Q13.1) MUTATED DEL PEAK 23(11Q13.1) WILD-TYPE
  FEMALE                          235                            816
  MALE                              3                              8
[1] 2 2
[1] FALSE
                                vv
clus                             INFILTRATING CARCINOMA NOS
  DEL PEAK 23(11Q13.1) MUTATED                            0
  DEL PEAK 23(11Q13.1) WILD-TYPE                          1
                                vv
clus                             INFILTRATING DUCTAL CARCINOMA
  DEL PEAK 23(11Q13.1) MUTATED                             169
  DEL PEAK 23(11Q13.1) WILD-TYPE                           594
                                vv
clus                             INFILTRATING LOBULAR CARCINOMA
  DEL PEAK 23(11Q13.1) MUTATED                               41
  DEL PEAK 23(11Q13.1) WILD-TYPE                            151
                                vv
clus                             MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  DEL PEAK 23(11Q13.1) MUTATED                     2                     2
  DEL PEAK 23(11Q13.1) WILD-TYPE                   4                     2
                                vv
clus                             MIXED HISTOLOGY (PLEASE SPECIFY)
  DEL PEAK 23(11Q13.1) MUTATED                                  9
  DEL PEAK 23(11Q13.1) WILD-TYPE                               21
                                vv
clus                             MUCINOUS CARCINOMA OTHER  SPECIFY
  DEL PEAK 23(11Q13.1) MUTATED                    2             13
  DEL PEAK 23(11Q13.1) WILD-TYPE                 15             35
D52V8, multiclass
                                  clus
vv                                 DEL PEAK 23(11Q13.1) MUTATED
  INFILTRATING CARCINOMA NOS                                  0
  INFILTRATING DUCTAL CARCINOMA                             169
  INFILTRATING LOBULAR CARCINOMA                             41
  MEDULLARY CARCINOMA                                         2
  METAPLASTIC CARCINOMA                                       2
  MIXED HISTOLOGY (PLEASE SPECIFY)                            9
  MUCINOUS CARCINOMA                                          2
  OTHER  SPECIFY                                             13
                                  clus
vv                                 DEL PEAK 23(11Q13.1) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                    1
  INFILTRATING DUCTAL CARCINOMA                               594
  INFILTRATING LOBULAR CARCINOMA                              151
  MEDULLARY CARCINOMA                                           4
  METAPLASTIC CARCINOMA                                         2
  MIXED HISTOLOGY (PLEASE SPECIFY)                             21
  MUCINOUS CARCINOMA                                           15
  OTHER  SPECIFY                                               35
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D52V9, binary
                                cls
clus                               0   1
  DEL PEAK 23(11Q13.1) MUTATED    62 176
  DEL PEAK 23(11Q13.1) WILD-TYPE 226 598
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 23(11Q13.1) MUTATED     62  176
  DEL PEAK 23(11Q13.1) WILD-TYPE  226  598
     clus
vv    DEL PEAK 23(11Q13.1) MUTATED DEL PEAK 23(11Q13.1) WILD-TYPE
  NO                            62                            226
  YES                          176                            598
[1] 2 2
[1] FALSE
D52V10, continuous
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 23(11Q13.1) MUTATED                                  0    21
  DEL PEAK 23(11Q13.1) WILD-TYPE                                1    39
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 23(11Q13.1) MUTATED                          48   142
  DEL PEAK 23(11Q13.1) WILD-TYPE                       122   594
D52V11, multiclass
                                  clus
vv                                 DEL PEAK 23(11Q13.1) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            0
  ASIAN                                                      21
  BLACK OR AFRICAN AMERICAN                                  48
  WHITE                                                     142
                                  clus
vv                                 DEL PEAK 23(11Q13.1) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              1
  ASIAN                                                        39
  BLACK OR AFRICAN AMERICAN                                   122
  WHITE                                                       594
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D52V12, binary
                                cls
clus                               0   1
  DEL PEAK 23(11Q13.1) MUTATED     9 185
  DEL PEAK 23(11Q13.1) WILD-TYPE  29 673
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 23(11Q13.1) MUTATED      9  185
  DEL PEAK 23(11Q13.1) WILD-TYPE   29  673
                        clus
vv                       DEL PEAK 23(11Q13.1) MUTATED
  HISPANIC OR LATINO                                9
  NOT HISPANIC OR LATINO                          185
                        clus
vv                       DEL PEAK 23(11Q13.1) WILD-TYPE
  HISPANIC OR LATINO                                 29
  NOT HISPANIC OR LATINO                            673
[1] 2 2
[1] FALSE

Clustering(53) Variable = DEL PEAK 24(11Q23.3) MUTATION ANALYSIS
D53V1, survival
                                sevent
clus2                              0   1
  DEL PEAK 24(11Q23.3) MUTATED   465  64
  DEL PEAK 24(11Q23.3) WILD-TYPE 451  64
  DEL PEAK 24(11Q23.3) MUTATED DEL PEAK 24(11Q23.3) WILD-TYPE 
                           529                            515 
  DEL PEAK 24(11Q23.3) MUTATED DEL PEAK 24(11Q23.3) WILD-TYPE 
                            64                             64 
$`DEL PEAK 24(11Q23.3) MUTATED`
TCGA-3C-AAAU TCGA-3C-AALJ TCGA-3C-AALK TCGA-4H-AAAK TCGA-5T-A9QA TCGA-A1-A0SD 
      129.14        42.81        40.14        11.44         9.96        14.37 
TCGA-A1-A0SE TCGA-A1-A0SH TCGA-A1-A0SJ TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SO 
       43.43        47.24        13.68         7.96        39.32        28.01 
TCGA-A1-A0SP TCGA-A1-A0SQ TCGA-A2-A04P TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04V 
       19.20        18.21        18.02       121.94        73.84        63.12 
TCGA-A2-A04X TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CR 
       55.43       136.73        99.12        24.79       114.81       107.93 
TCGA-A2-A0CT TCGA-A2-A0CW TCGA-A2-A0CX TCGA-A2-A0D4 TCGA-A2-A0EQ TCGA-A2-A0ER 
       75.25       107.93        56.81        25.22        79.76        74.40 
TCGA-A2-A0ET TCGA-A2-A0EW TCGA-A2-A0SU TCGA-A2-A0SX TCGA-A2-A0SY TCGA-A2-A0T1 
       35.05        61.94        54.64        50.43        44.28        17.13 
TCGA-A2-A0T3 TCGA-A2-A0T4 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YE TCGA-A2-A0YF 
       49.84        20.52        20.75        32.55        18.21        50.47 
TCGA-A2-A0YI TCGA-A2-A0YK TCGA-A2-A0YM TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FW 
       49.48        19.33        31.73        23.77        23.47        17.36 
TCGA-A2-A1FX TCGA-A2-A1G4 TCGA-A2-A25B TCGA-A2-A25C TCGA-A2-A25E TCGA-A2-A3KC 
       60.72        19.56        42.44        17.19       105.34        20.88 
TCGA-A2-A3KD TCGA-A2-A3XW TCGA-A2-A3XX TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4S1 
       39.65        49.48        47.31        38.37         7.30        26.96 
TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CE TCGA-A7-A0CJ TCGA-A7-A0DC TCGA-A7-A13D 
       21.14        21.90        35.31        30.61        29.79        31.73 
TCGA-A7-A13E TCGA-A7-A13F TCGA-A7-A13H TCGA-A7-A26E TCGA-A7-A26J TCGA-A7-A2KD 
       20.19        25.15        29.56        31.36        20.61        22.32 
TCGA-A7-A3IZ TCGA-A7-A3J1 TCGA-A7-A4SA TCGA-A7-A4SB TCGA-A7-A4SD TCGA-A7-A4SE 
       10.59        11.28        14.93        13.74        14.50        21.17 
TCGA-A7-A4SF TCGA-A7-A56D TCGA-A7-A5ZV TCGA-A7-A6VV TCGA-A7-A6VW TCGA-A7-A6VX 
       17.92        14.73        12.10        10.29         9.37        10.42 
TCGA-A7-A6VY TCGA-A8-A06O TCGA-A8-A06T TCGA-A8-A06U TCGA-A8-A06X TCGA-A8-A06Z 
        8.75        13.02        53.06        29.03        31.00         1.02 
TCGA-A8-A079 TCGA-A8-A07B TCGA-A8-A07E TCGA-A8-A07I TCGA-A8-A07L TCGA-A8-A07P 
        9.01        43.00        19.99        14.01        32.05        10.98 
TCGA-A8-A07W TCGA-A8-A082 TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08F 
        9.99        18.05        36.95        13.02         0.99        33.01 
TCGA-A8-A08G TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08O TCGA-A8-A08P 
       19.96        12.00        37.05         9.99        31.00        31.00 
TCGA-A8-A08S TCGA-A8-A08X TCGA-A8-A091 TCGA-A8-A093 TCGA-A8-A097 TCGA-A8-A09A 
       33.01        43.00        33.01        17.95        12.00         9.99 
TCGA-A8-A09B TCGA-A8-A09C TCGA-A8-A09D TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K 
       12.00         1.02        50.04        49.05        45.07        29.98 
TCGA-A8-A09M TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09W TCGA-A8-A0A1 TCGA-A8-A0A2 
       33.07         8.98        19.04         0.99        12.00        19.04 
TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-AC-A23C TCGA-AC-A23E 
       13.02        21.04        27.02        17.03         0.95         2.37 
TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FG TCGA-AC-A2FM 
        1.48        38.53        99.35        40.57        36.99        26.04 
TCGA-AC-A2FO TCGA-AC-A2QH TCGA-AC-A2QI TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3W5 
       50.70        33.04         0.92        16.31        14.83        16.57 
TCGA-AC-A62V TCGA-AC-A6IV TCGA-AC-A6IW TCGA-AC-A6IX TCGA-AC-A7VB TCGA-AC-A7VC 
       11.44        18.67        13.58        12.26         8.22         0.03 
TCGA-AC-A8OP TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A041 TCGA-AN-A049 TCGA-AN-A04A 
       20.19         0.33         0.33         0.23         0.62         2.96 
TCGA-AN-A04C TCGA-AN-A0AJ TCGA-AN-A0AK TCGA-AN-A0AT TCGA-AN-A0FJ TCGA-AN-A0FS 
        1.78         9.96         7.36         0.33         7.96         6.28 
TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FX TCGA-AN-A0FZ TCGA-AN-A0XL 
        7.04         0.33         0.36         0.33         0.33         0.33 
TCGA-AN-A0XN TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XW TCGA-AO-A03L TCGA-AO-A03M 
        0.33         0.33         0.33         5.59        80.28        61.35 
TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03T TCGA-AO-A03V TCGA-AO-A0J3 TCGA-AO-A0J4 
       81.63        95.70        47.87        29.13        21.40        52.18 
TCGA-AO-A0J5 TCGA-AO-A0J6 TCGA-AO-A0J7 TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JD 
       26.04        37.48        20.32        53.03        21.53        72.00 
TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JG TCGA-AO-A0JL TCGA-AO-A0JM TCGA-AO-A124 
       76.77        21.37        26.24        55.33        71.80       102.58 
TCGA-AO-A126 TCGA-AO-A129 TCGA-AO-A12E TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A1KQ 
      108.72       108.03        57.30        48.36        41.62        61.87 
TCGA-AO-A1KS TCGA-AO-A1KT TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A0Y5 TCGA-AQ-A1H2 
        0.53        17.79        24.79        26.93         5.65        15.62 
TCGA-AQ-A54N TCGA-AQ-A54O TCGA-AR-A0TT TCGA-AR-A0TV TCGA-AR-A0TW TCGA-AR-A0TZ 
        2.56        32.91        86.66        42.35        98.93       107.24 
TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A0U2 TCGA-AR-A0U3 TCGA-AR-A0U4 TCGA-AR-A1AI 
       65.36       101.95        83.87       114.02        85.97        61.84 
TCGA-AR-A1AK TCGA-AR-A1AM TCGA-AR-A1AP TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A1AW 
       51.25        76.11        39.98        76.21        61.28        63.62 
TCGA-AR-A24H TCGA-AR-A24L TCGA-AR-A24Q TCGA-AR-A24R TCGA-AR-A24T TCGA-AR-A24V 
      160.90        94.22       104.28        87.22        76.01        85.35 
TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A254 TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LJ 
       79.00        89.00        72.76        58.92        93.83        62.86 
TCGA-AR-A2LK TCGA-AR-A2LL TCGA-AR-A2LM TCGA-AR-A2LO TCGA-B6-A0I9 TCGA-B6-A0IB 
       54.21        66.15        52.11        39.39        12.13       129.57 
TCGA-B6-A0IG TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0RG TCGA-B6-A0RL 
      146.50       176.98        18.77       126.12        68.45        81.17 
TCGA-B6-A0RO TCGA-B6-A0RS TCGA-B6-A0RU TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT 
      162.05       100.70       131.21       157.41        97.48       188.68 
TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WY TCGA-B6-A0X1 TCGA-B6-A0X7 
       79.63        18.35        21.47       113.79       186.48        58.88 
TCGA-B6-A1KF TCGA-B6-A1KN TCGA-B6-A402 TCGA-B6-A40B TCGA-BH-A0AU TCGA-BH-A0AV 
      101.52       139.17        74.99       103.63        24.53        59.84 
TCGA-BH-A0AZ TCGA-BH-A0B5 TCGA-BH-A0B6 TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BD 
       28.50        48.36        56.94        37.22        32.02        18.21 
TCGA-BH-A0BG TCGA-BH-A0BL TCGA-BH-A0BP TCGA-BH-A0BR TCGA-BH-A0BV TCGA-BH-A0BZ 
       24.85        44.05        48.69        53.69        49.94        49.05 
TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DE 
       41.75        44.02        48.13        42.90        45.83        31.17 
TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DQ TCGA-BH-A0DZ 
       23.44        38.01        22.13        13.91         3.22        16.27 
TCGA-BH-A0E0 TCGA-BH-A0E2 TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0GZ TCGA-BH-A0H0 
        4.41        14.30        31.00        24.43        10.78        15.16 
TCGA-BH-A0H7 TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HK TCGA-BH-A0HP TCGA-BH-A0HU 
       23.08        52.96        26.50         5.85        13.61        12.89 
TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0W3 TCGA-BH-A0WA TCGA-BH-A18I 
       51.32        27.25        50.79        23.93        23.05         7.23 
TCGA-BH-A18J TCGA-BH-A18L TCGA-BH-A18M TCGA-BH-A18P TCGA-BH-A18R TCGA-BH-A18V 
       20.12        26.66        72.56        30.28        37.55        51.16 
TCGA-BH-A1EN TCGA-BH-A1EO TCGA-BH-A1ES TCGA-BH-A1EU TCGA-BH-A1EW TCGA-BH-A1EY 
       69.93        91.99       113.82        42.28        55.69        17.69 
TCGA-BH-A1F2 TCGA-BH-A1F8 TCGA-BH-A1FC TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FN 
       31.53        24.66       114.15        33.17        74.73        72.07 
TCGA-BH-A201 TCGA-BH-A204 TCGA-BH-A28Q TCGA-BH-A42T TCGA-BH-A5IZ TCGA-BH-A5J0 
       28.14        83.31         6.44        10.52        18.64        23.51 
TCGA-BH-A8FY TCGA-BH-A8FZ TCGA-BH-AB28 TCGA-C8-A12M TCGA-C8-A12Q TCGA-C8-A12U 
        9.70        18.87         9.44        11.77        12.66        12.66 
TCGA-C8-A12W TCGA-C8-A132 TCGA-C8-A135 TCGA-C8-A137 TCGA-C8-A138 TCGA-C8-A1HE 
       12.66         1.87         1.05         4.11         4.08        12.33 
TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HL 
       10.92        11.34        11.28         0.16        12.03        10.42 
TCGA-C8-A26W TCGA-C8-A26X TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A27A TCGA-C8-A27B 
        0.23         0.36         0.43         8.28        12.20         0.99 
TCGA-C8-A3M8 TCGA-C8-A8HP TCGA-C8-A8HQ TCGA-C8-A9FZ TCGA-D8-A13Y TCGA-D8-A13Z 
        0.23        13.02        12.49        19.46        11.90        20.88 
TCGA-D8-A140 TCGA-D8-A143 TCGA-D8-A145 TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JA 
       13.25        14.17        13.48        14.17        17.49        16.50 
TCGA-D8-A1JC TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JI TCGA-D8-A1JK TCGA-D8-A1JM 
       15.78        18.15        18.90        18.97        20.12        19.40 
TCGA-D8-A1JP TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XF 
       21.01        18.58        17.79        25.74        23.90        15.22 
TCGA-D8-A1XK TCGA-D8-A1XO TCGA-D8-A1XS TCGA-D8-A1XU TCGA-D8-A1Y0 TCGA-D8-A1Y2 
       14.50        15.55        16.31        12.99        15.52        14.24 
TCGA-D8-A27G TCGA-D8-A27I TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27R TCGA-D8-A27V 
       13.45        14.43        13.48         4.80        10.09        12.53 
TCGA-D8-A27W TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10E 
       12.26        43.00        34.42        46.59        40.41        28.44 
TCGA-E2-A14O TCGA-E2-A14S TCGA-E2-A14V TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A155 
       44.68        33.17        34.26        25.41        27.12        21.04 
TCGA-E2-A158 TCGA-E2-A15A TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15K 
       14.79        23.34        20.71        21.63        18.21         9.04 
TCGA-E2-A15M TCGA-E2-A15O TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A15T 
       11.05        13.02        19.56        17.06        14.07        14.99 
TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IG TCGA-E2-A1IH TCGA-E2-A1IU TCGA-E2-A1L7 
       17.10        38.30        32.78        33.73        11.08        27.42 
TCGA-E2-A1L8 TCGA-E2-A1LA TCGA-E2-A1LL TCGA-E2-A2P5 TCGA-E2-A2P6 TCGA-E2-A56Z 
       39.62        24.59        43.04        16.93         5.52         8.28 
TCGA-E2-A573 TCGA-E2-A576 TCGA-E2-A9RU TCGA-E9-A1N5 TCGA-E9-A1N8 TCGA-E9-A1N9 
       34.92        34.29        12.85        36.82        12.00        13.12 
TCGA-E9-A1NA TCGA-E9-A1NC TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1NI TCGA-E9-A1QZ 
       36.56        39.55        35.24        25.84         9.86        11.90 
TCGA-E9-A1R2 TCGA-E9-A1R7 TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RG TCGA-E9-A1RI 
       34.95        21.21        34.65         6.58        21.27        35.64 
TCGA-E9-A229 TCGA-E9-A22B TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A22H 
       13.32        22.75        41.03        12.89        23.51        20.71 
TCGA-E9-A243 TCGA-E9-A247 TCGA-E9-A295 TCGA-E9-A3HO TCGA-E9-A3QA TCGA-E9-A5FL 
       17.06        27.22         0.72        26.07        30.18         0.79 
TCGA-E9-A5UO TCGA-E9-A5UP TCGA-E9-A6HE TCGA-EW-A1IW TCGA-EW-A1J1 TCGA-EW-A1J2 
       13.81        14.40        15.39        12.20        18.90        13.25 
TCGA-EW-A1J3 TCGA-EW-A1J5 TCGA-EW-A1J6 TCGA-EW-A1OV TCGA-EW-A1OX TCGA-EW-A1OY 
       16.57        15.68        28.77        25.94        29.95        29.85 
TCGA-EW-A1OZ TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A1PA TCGA-EW-A1PC TCGA-EW-A1PD 
       40.41        29.82        23.11        18.90         6.15        13.94 
TCGA-EW-A1PF TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FW TCGA-EW-A423 TCGA-EW-A424 
       14.43        55.00        52.73        22.09        10.16        23.51 
TCGA-GM-A2D9 TCGA-GM-A2DD TCGA-GM-A2DL TCGA-GM-A2DO TCGA-GM-A3NW TCGA-GM-A3XL 
       59.57        75.02       115.69        85.35       110.50        69.30 
TCGA-LD-A66U TCGA-LD-A7W6 TCGA-LL-A5YL TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A5YO 
       21.24        13.28        17.06        15.32        14.70        14.47 
TCGA-LL-A5YP TCGA-LL-A6FP TCGA-LL-A6FQ TCGA-LL-A6FR TCGA-LL-A73Z TCGA-LL-A7SZ 
       14.79        22.26         2.63        16.08         7.46        14.70 
TCGA-LL-A7T0 TCGA-LL-A8F5 TCGA-LQ-A4E4 TCGA-OK-A5Q2 TCGA-OL-A5D8 TCGA-OL-A5DA 
       12.36        14.73        27.91         2.10        31.99        58.62 
TCGA-OL-A5RW TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66J TCGA-OL-A66K 
       36.36        24.72        22.32        20.38        65.62        41.92 
TCGA-OL-A66N TCGA-OL-A66O TCGA-OL-A66P TCGA-OL-A6VO TCGA-PE-A5DC TCGA-PE-A5DD 
       26.04        17.36        14.07        28.21        47.01        64.21 
TCGA-PL-A8LX TCGA-S3-A6ZF TCGA-S3-A6ZG TCGA-S3-A6ZH TCGA-S3-AA0Z TCGA-S3-AA12 
        0.16        16.50        13.12        16.93        16.80        15.35 
TCGA-S3-AA17 TCGA-UL-AAZ6 TCGA-WT-AB41 TCGA-XX-A899 TCGA-XX-A89A TCGA-Z7-A8R5 
       13.94        17.03        52.96        15.35        16.04       108.07 
TCGA-Z7-A8R6 
      107.05 

$`DEL PEAK 24(11Q23.3) WILD-TYPE`
TCGA-3C-AALI TCGA-5L-AAT0 TCGA-5L-AAT1 TCGA-A1-A0SB TCGA-A1-A0SF TCGA-A1-A0SG 
      131.67        48.56        48.36         8.52        48.10        14.27 
TCGA-A1-A0SI TCGA-A1-A0SK TCGA-A2-A04N TCGA-A2-A04Q TCGA-A2-A04U TCGA-A2-A04W 
       20.88        31.79       104.81        78.41        87.25       101.98 
TCGA-A2-A04Y TCGA-A2-A0CP TCGA-A2-A0CQ TCGA-A2-A0CS TCGA-A2-A0CU TCGA-A2-A0CV 
       36.13        92.48        88.60        75.55         5.19        98.99 
TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0EM TCGA-A2-A0EN 
       67.33        34.55        33.76        61.58       101.72       134.40 
TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0ES TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EX 
       80.28       107.61        72.00        34.29        31.82        24.72 
TCGA-A2-A0EY TCGA-A2-A0ST TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0T0 TCGA-A2-A0T2 
       63.29        99.19        27.12        44.88        17.52         8.38 
TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0YD TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A0YJ 
       17.46        18.90        25.28        21.90        21.67        18.61 
TCGA-A2-A0YL TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G1 TCGA-A2-A1G6 TCGA-A2-A259 
       48.46        22.45        20.25        19.20        16.47        52.47 
TCGA-A2-A25A TCGA-A2-A25D TCGA-A2-A25F TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XU 
      107.70        18.15        10.59        33.93        83.01        29.98 
TCGA-A2-A3XV TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 
       32.75        34.98        50.37        24.39        21.30        23.21 
TCGA-A7-A0CD TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DB 
       38.30        34.29        35.47        37.45        35.67        33.11 
TCGA-A7-A13G TCGA-A7-A26F TCGA-A7-A26G TCGA-A7-A26H TCGA-A7-A26I TCGA-A7-A3IY 
       23.61        24.26        23.74        23.80        21.73        11.34 
TCGA-A7-A3J0 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A426 TCGA-A7-A5ZW TCGA-A7-A5ZX 
       10.29        13.41        14.70        11.97        10.72        11.05 
TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06R TCGA-A8-A06Y TCGA-A8-A075 TCGA-A8-A076 
       13.02         1.02        17.98        26.01        17.03        53.98 
TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07J TCGA-A8-A07O TCGA-A8-A07R TCGA-A8-A07S 
       18.97        18.97        12.00         9.99         8.98         7.99 
TCGA-A8-A07U TCGA-A8-A07Z TCGA-A8-A084 TCGA-A8-A08B TCGA-A8-A08C TCGA-A8-A08R 
       24.99        45.07        15.06        38.01        28.96         0.99 
TCGA-A8-A08T TCGA-A8-A08Z TCGA-A8-A092 TCGA-A8-A095 TCGA-A8-A099 TCGA-A8-A09N 
      112.08        40.01        30.97        41.98         9.99         1.02 
TCGA-A8-A09Q TCGA-A8-A09V TCGA-A8-A09X TCGA-A8-A0A7 TCGA-A8-A0AD TCGA-AC-A23G 
       25.02        15.02        14.01         0.99        38.04        10.85 
TCGA-AC-A23H TCGA-AC-A2FF TCGA-AC-A2FK TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3QP 
        5.72        55.43        38.79         2.27        32.45        22.19 
TCGA-AC-A3TN TCGA-AC-A3W6 TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A5XS TCGA-AC-A62X 
       14.99        19.79        23.24        24.79         1.55        13.71 
TCGA-AC-A62Y TCGA-AC-A6NO TCGA-AC-A8OQ TCGA-AC-A8OR TCGA-AC-A8OS TCGA-AN-A046 
       17.42         1.68         1.12         1.32         2.30         0.33 
TCGA-AN-A04D TCGA-AN-A0AL TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0FD 
        1.71         6.51         0.16         0.33         0.33         6.44 
TCGA-AN-A0FF TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FN TCGA-AN-A0FY TCGA-AN-A0XO 
        5.65         7.00         7.59         7.17         0.33        12.33 
TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XU TCGA-AN-A0XV TCGA-AO-A03N TCGA-AO-A03R 
        0.30         0.33         0.33         5.33        66.77        68.75 
TCGA-AO-A03U TCGA-AO-A0J2 TCGA-AO-A0J8 TCGA-AO-A0JB TCGA-AO-A0JC TCGA-AO-A0JI 
       58.95        32.78        22.36        50.70        50.86        50.24 
TCGA-AO-A0JJ TCGA-AO-A125 TCGA-AO-A128 TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12D 
       62.04        99.25       106.78        90.58        98.27        64.04 
TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KR TCGA-AQ-A04L TCGA-AQ-A1H3 
       28.37        14.73        82.62        70.39       130.09        32.52 
TCGA-AQ-A7U7 TCGA-AR-A0TP TCGA-AR-A0TQ TCGA-AR-A0TR TCGA-AR-A0TS TCGA-AR-A0TX 
       19.20       111.32        73.64         5.26        74.79        64.83 
TCGA-AR-A0TY TCGA-AR-A1AH TCGA-AR-A1AJ TCGA-AR-A1AL TCGA-AR-A1AN TCGA-AR-A1AO 
       55.86        75.55        52.77        48.82        43.73        43.56 
TCGA-AR-A1AQ TCGA-AR-A1AR TCGA-AR-A1AS TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24K 
       43.07        17.23        37.81        62.14        33.73        50.89 
TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24S TCGA-AR-A24U 
       96.89        78.51        84.20         2.76        97.84        53.36 
TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A251 TCGA-AR-A252 TCGA-AR-A2LE TCGA-AR-A2LH 
       50.96        83.77        78.48        73.18       143.21        20.25 
TCGA-AR-A2LN TCGA-AR-A2LQ TCGA-AR-A2LR TCGA-AR-A5QM TCGA-AR-A5QN TCGA-AR-A5QP 
       38.17        40.54        20.38        54.74        16.04        20.45 
TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0IA TCGA-B6-A0IC 
       10.59        77.62       143.38       149.59       220.90        50.70 
TCGA-B6-A0IE TCGA-B6-A0IH TCGA-B6-A0IN TCGA-B6-A0IO TCGA-B6-A0IP TCGA-B6-A0IQ 
       65.72       112.37        84.59       110.14       110.93       140.88 
TCGA-B6-A0RE TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RM TCGA-B6-A0RN TCGA-B6-A0RP 
      211.56       189.01       234.28        78.02       172.96       102.77 
TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X4 TCGA-B6-A0X5 
      140.48        89.46       129.57       129.70        28.27        68.94 
TCGA-B6-A1KC TCGA-B6-A1KI TCGA-B6-A2IU TCGA-B6-A401 TCGA-B6-A408 TCGA-B6-A40C 
       43.59        73.51       170.17        85.35        68.12        71.15 
TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0B0 TCGA-BH-A0B2 TCGA-BH-A0B3 TCGA-BH-A0B4 
       20.45        25.55        46.95        40.83        39.55        39.16 
TCGA-BH-A0B7 TCGA-BH-A0B9 TCGA-BH-A0BF TCGA-BH-A0BJ TCGA-BH-A0BM TCGA-BH-A0BO 
       56.98        51.68        25.71        21.70        61.68        35.67 
TCGA-BH-A0BQ TCGA-BH-A0BS TCGA-BH-A0BT TCGA-BH-A0BW TCGA-BH-A0DL TCGA-BH-A0DO 
       27.19        53.95        45.57        11.67        48.23        17.26 
TCGA-BH-A0DP TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0E1 
       15.65         2.56        38.47        67.86        47.41        15.68 
TCGA-BH-A0E6 TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EA TCGA-BH-A0EB TCGA-BH-A0GY 
        9.63        44.81        46.19        32.58        24.49        30.35 
TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H9 TCGA-BH-A0HI TCGA-BH-A0HO 
       37.78        35.51        24.56        41.00        20.38         2.50 
TCGA-BH-A0HQ TCGA-BH-A0RX TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A18F 
       36.85         5.59        24.95        42.35        44.81         8.81 
TCGA-BH-A18G TCGA-BH-A18K TCGA-BH-A18N TCGA-BH-A18Q TCGA-BH-A18S TCGA-BH-A18T 
        2.01        90.84        37.74        55.63        66.05         7.36 
TCGA-BH-A18U TCGA-BH-A1ET TCGA-BH-A1EV TCGA-BH-A1EX TCGA-BH-A1F0 TCGA-BH-A1F5 
       51.39        82.85        12.00        49.58        25.81        89.16 
TCGA-BH-A1F6 TCGA-BH-A1FB TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL 
       97.48       120.62       122.89        36.92        63.35        55.00 
TCGA-BH-A1FM TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A202 TCGA-BH-A203 TCGA-BH-A208 
       45.63       144.59        72.07        26.14        38.60        57.83 
TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A2L8 TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A6R8 
      130.16        10.65        20.12       109.28         8.94         9.63 
TCGA-BH-A6R9 TCGA-BH-A8G0 TCGA-C8-A12L TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12P 
        5.26        21.76        11.93        11.77        12.66        11.77 
TCGA-C8-A12V TCGA-C8-A12X TCGA-C8-A12Z TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A134 
       12.66        12.66         0.39         3.16         2.24         1.12 
TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A26V TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A275 
        2.30         3.25         0.30         9.67         9.53         0.03 
TCGA-C8-A278 TCGA-C8-A3M7 TCGA-C8-A8HR TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A146 
        9.50         0.03        13.41        20.58        13.97        21.14 
TCGA-D8-A147 TCGA-D8-A1JB TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JH TCGA-D8-A1JJ 
       19.20        18.71        12.03        12.03        14.01        20.09 
TCGA-D8-A1JL TCGA-D8-A1JN TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X7 
       20.09        20.38        12.20        13.32        14.70        16.73 
TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XD TCGA-D8-A1XG TCGA-D8-A1XJ 
       27.58        18.15        12.39        17.16        14.73        21.83 
TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XQ TCGA-D8-A1XR TCGA-D8-A1XT TCGA-D8-A1XV 
       19.92        17.69        16.41        15.85         6.35        15.16 
TCGA-D8-A1XW TCGA-D8-A1XY TCGA-D8-A1XZ TCGA-D8-A1Y1 TCGA-D8-A1Y3 TCGA-D8-A27E 
       12.66        16.54        15.32         9.93        14.14        17.42 
TCGA-D8-A27F TCGA-D8-A27H TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27P TCGA-D8-A27T 
       16.04        13.05         9.44        16.41         0.76        13.08 
TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-D8-A73U TCGA-D8-A73W TCGA-D8-A73X 
       33.37        18.51        21.67        16.18         8.02        12.10 
TCGA-E2-A108 TCGA-E2-A10B TCGA-E2-A10C TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14P 
       27.52        37.51        40.11        28.87        47.15        40.96 
TCGA-E2-A14Q TCGA-E2-A14R TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14W TCGA-E2-A14X 
       38.24        38.60        33.30        43.33        32.02        31.96 
TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A153 TCGA-E2-A154 TCGA-E2-A156 TCGA-E2-A159 
       28.60        18.51        23.24        19.43        23.87        25.05 
TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15H TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15L 
       22.82        17.29        12.92        17.42        19.40        20.58 
TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 
       60.53        53.62        53.03        33.01        32.35        28.50 
TCGA-E2-A1BC TCGA-E2-A1IF TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL 
       16.47        37.41        33.70        28.44        22.65         3.88 
TCGA-E2-A1IN TCGA-E2-A1IO TCGA-E2-A1L6 TCGA-E2-A1L9 TCGA-E2-A1LB TCGA-E2-A1LE 
       22.19        20.98        54.18        19.66        40.47        28.90 
TCGA-E2-A1LG TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A3DX TCGA-E2-A570 
       18.87       106.75       102.61         8.75        15.72        30.61 
TCGA-E2-A574 TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N6 TCGA-E9-A1ND TCGA-E9-A1NE 
       26.56        34.82        32.88        13.48        12.59        35.77 
TCGA-E9-A1R0 TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1RA 
       28.27         2.56         6.12         3.02         2.76        32.09 
TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RD TCGA-E9-A1RH TCGA-E9-A226 TCGA-E9-A227 
       32.09        40.24         1.12        34.59        34.13        32.05 
TCGA-E9-A228 TCGA-E9-A22A TCGA-E9-A244 TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A 
       12.53        39.09         0.69         1.94         7.13        24.56 
TCGA-E9-A2JS TCGA-E9-A2JT TCGA-E9-A3Q9 TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A54Y 
       29.72         0.76        18.41        15.72        12.33        23.84 
TCGA-E9-A5FK TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1OW TCGA-EW-A1P0 
       14.70        39.72         8.48        18.21        22.82        41.13 
TCGA-EW-A1P1 TCGA-EW-A1P3 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1P8 TCGA-EW-A1PB 
       39.78        52.96        18.48        30.08         7.86        19.99 
TCGA-EW-A1PE TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FV TCGA-EW-A3E8 TCGA-EW-A3U0 
       10.52        34.55        19.96        25.91        34.03        17.49 
TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DC TCGA-GM-A2DF 
        7.40       109.87       216.76        79.10        83.34        70.85 
TCGA-GM-A2DH TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A3NY 
       72.10        85.15        86.96       106.06       101.62        38.20 
TCGA-GM-A3XG TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2NL 
       43.73        66.38        72.03        13.55        18.12         2.60 
TCGA-HN-A2OB TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LD-A74U TCGA-LD-A7W5 TCGA-LD-A9QF 
       62.43        11.84        11.57        13.22         7.10        10.62 
TCGA-LL-A440 TCGA-LL-A441 TCGA-LL-A442 TCGA-LL-A50Y TCGA-LL-A73Y TCGA-LL-A740 
       24.95        11.44        10.95        25.05        15.68        14.50 
TCGA-LL-A9Q3 TCGA-MS-A51U TCGA-OL-A5D6 TCGA-OL-A5D7 TCGA-OL-A5RU TCGA-OL-A5RV 
       14.07        22.39        36.30        58.52        40.08        34.92 
TCGA-OL-A5RX TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66L TCGA-OL-A6VQ TCGA-OL-A6VR 
       28.87        26.70        23.47        42.77        19.73        40.11 
TCGA-OL-A97C TCGA-PE-A5DE TCGA-PL-A8LY TCGA-PL-A8LZ TCGA-S3-AA10 TCGA-S3-AA11 
        8.91        86.96         0.26         9.93        15.39        13.84 
TCGA-S3-AA14 TCGA-S3-AA15 TCGA-UU-A93S TCGA-W8-A86G TCGA-WT-AB44 
       14.96        13.84         3.81        11.41        29.03 

  DEL PEAK 24(11Q23.3) MUTATED DEL PEAK 24(11Q23.3) WILD-TYPE 
                          0.03                           0.03 
  DEL PEAK 24(11Q23.3) MUTATED DEL PEAK 24(11Q23.3) WILD-TYPE 
                        188.68                         234.28 
  DEL PEAK 24(11Q23.3) MUTATED DEL PEAK 24(11Q23.3) WILD-TYPE 
                         23.11                          25.55 
[1] "0.0 - 188.7 (23.1)" "0.0 - 234.3 (25.6)"
[1] "hr=" "1.1"
D53V2, continuous
                                vv
clus                             STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  DEL PEAK 24(11Q23.3) MUTATED        37       35        3        2       170
  DEL PEAK 24(11Q23.3) WILD-TYPE      52       46        5        1       183
                                vv
clus                             STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  DEL PEAK 24(11Q23.3) MUTATED         139         1         87         16
  DEL PEAK 24(11Q23.3) WILD-TYPE       106         1         63         13
                                vv
clus                             STAGE IIIC STAGE IV STAGE TIS STAGE X
  DEL PEAK 24(11Q23.3) MUTATED           27       12         0       8
  DEL PEAK 24(11Q23.3) WILD-TYPE         36        8         1       5
D53V3, multiclass
            clus
vv           DEL PEAK 24(11Q23.3) MUTATED DEL PEAK 24(11Q23.3) WILD-TYPE
  STAGE I                              37                             52
  STAGE IA                             35                             46
  STAGE IB                              3                              5
  STAGE II                              2                              1
  STAGE IIA                           170                            183
  STAGE IIB                           139                            106
  STAGE III                             1                              1
  STAGE IIIA                           87                             63
  STAGE IIIB                           16                             13
  STAGE IIIC                           27                             36
  STAGE IV                             12                              8
  STAGE TIS                             0                              1
  STAGE X                               8                              5
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              T1  T2  T3  T4
  DEL PEAK 24(11Q23.3) MUTATED   119 323  74  22
  DEL PEAK 24(11Q23.3) WILD-TYPE 153 293  56  18
D53V4, multiclass
    clus
vv   DEL PEAK 24(11Q23.3) MUTATED DEL PEAK 24(11Q23.3) WILD-TYPE
  T1                          119                            153
  T2                          323                            293
  T3                           74                             56
  T4                           22                             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              N0  N1  N2  N3
  DEL PEAK 24(11Q23.3) MUTATED   236 190  67  33
  DEL PEAK 24(11Q23.3) WILD-TYPE 265 160  50  42
D53V5, multiclass
    clus
vv   DEL PEAK 24(11Q23.3) MUTATED DEL PEAK 24(11Q23.3) WILD-TYPE
  N0                          236                            265
  N1                          190                            160
  N2                           67                             50
  N3                           33                             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D53V6, binary
                                cls
clus                               0   1
  DEL PEAK 24(11Q23.3) MUTATED   434  13
  DEL PEAK 24(11Q23.3) WILD-TYPE 445   8
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 24(11Q23.3) MUTATED    434   13
  DEL PEAK 24(11Q23.3) WILD-TYPE  445    8
   clus
vv  DEL PEAK 24(11Q23.3) MUTATED DEL PEAK 24(11Q23.3) WILD-TYPE
  0                          434                            445
  1                           13                              8
[1] 2 2
[1] FALSE
D53V7, binary
                                cls
clus                               0   1
  DEL PEAK 24(11Q23.3) MUTATED   530   9
  DEL PEAK 24(11Q23.3) WILD-TYPE 521   2
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 24(11Q23.3) MUTATED    530    9
  DEL PEAK 24(11Q23.3) WILD-TYPE  521    2
        clus
vv       DEL PEAK 24(11Q23.3) MUTATED DEL PEAK 24(11Q23.3) WILD-TYPE
  FEMALE                          530                            521
  MALE                              9                              2
[1] 2 2
[1] FALSE
                                vv
clus                             INFILTRATING CARCINOMA NOS
  DEL PEAK 24(11Q23.3) MUTATED                            1
  DEL PEAK 24(11Q23.3) WILD-TYPE                          0
                                vv
clus                             INFILTRATING DUCTAL CARCINOMA
  DEL PEAK 24(11Q23.3) MUTATED                             393
  DEL PEAK 24(11Q23.3) WILD-TYPE                           370
                                vv
clus                             INFILTRATING LOBULAR CARCINOMA
  DEL PEAK 24(11Q23.3) MUTATED                               98
  DEL PEAK 24(11Q23.3) WILD-TYPE                             94
                                vv
clus                             MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  DEL PEAK 24(11Q23.3) MUTATED                     5                     3
  DEL PEAK 24(11Q23.3) WILD-TYPE                   1                     1
                                vv
clus                             MIXED HISTOLOGY (PLEASE SPECIFY)
  DEL PEAK 24(11Q23.3) MUTATED                                 16
  DEL PEAK 24(11Q23.3) WILD-TYPE                               14
                                vv
clus                             MUCINOUS CARCINOMA OTHER  SPECIFY
  DEL PEAK 24(11Q23.3) MUTATED                    5             17
  DEL PEAK 24(11Q23.3) WILD-TYPE                 12             31
D53V8, multiclass
                                  clus
vv                                 DEL PEAK 24(11Q23.3) MUTATED
  INFILTRATING CARCINOMA NOS                                  1
  INFILTRATING DUCTAL CARCINOMA                             393
  INFILTRATING LOBULAR CARCINOMA                             98
  MEDULLARY CARCINOMA                                         5
  METAPLASTIC CARCINOMA                                       3
  MIXED HISTOLOGY (PLEASE SPECIFY)                           16
  MUCINOUS CARCINOMA                                          5
  OTHER  SPECIFY                                             17
                                  clus
vv                                 DEL PEAK 24(11Q23.3) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                    0
  INFILTRATING DUCTAL CARCINOMA                               370
  INFILTRATING LOBULAR CARCINOMA                               94
  MEDULLARY CARCINOMA                                           1
  METAPLASTIC CARCINOMA                                         1
  MIXED HISTOLOGY (PLEASE SPECIFY)                             14
  MUCINOUS CARCINOMA                                           12
  OTHER  SPECIFY                                               31
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D53V9, binary
                                cls
clus                               0   1
  DEL PEAK 24(11Q23.3) MUTATED   146 393
  DEL PEAK 24(11Q23.3) WILD-TYPE 142 381
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 24(11Q23.3) MUTATED    146  393
  DEL PEAK 24(11Q23.3) WILD-TYPE  142  381
     clus
vv    DEL PEAK 24(11Q23.3) MUTATED DEL PEAK 24(11Q23.3) WILD-TYPE
  NO                           146                            142
  YES                          393                            381
[1] 2 2
[1] FALSE
D53V10, continuous
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 24(11Q23.3) MUTATED                                  1    33
  DEL PEAK 24(11Q23.3) WILD-TYPE                                0    27
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 24(11Q23.3) MUTATED                         101   350
  DEL PEAK 24(11Q23.3) WILD-TYPE                        69   386
D53V11, multiclass
                                  clus
vv                                 DEL PEAK 24(11Q23.3) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            1
  ASIAN                                                      33
  BLACK OR AFRICAN AMERICAN                                 101
  WHITE                                                     350
                                  clus
vv                                 DEL PEAK 24(11Q23.3) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              0
  ASIAN                                                        27
  BLACK OR AFRICAN AMERICAN                                    69
  WHITE                                                       386
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D53V12, binary
                                cls
clus                               0   1
  DEL PEAK 24(11Q23.3) MUTATED    19 428
  DEL PEAK 24(11Q23.3) WILD-TYPE  19 430
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 24(11Q23.3) MUTATED     19  428
  DEL PEAK 24(11Q23.3) WILD-TYPE   19  430
                        clus
vv                       DEL PEAK 24(11Q23.3) MUTATED
  HISPANIC OR LATINO                               19
  NOT HISPANIC OR LATINO                          428
                        clus
vv                       DEL PEAK 24(11Q23.3) WILD-TYPE
  HISPANIC OR LATINO                                 19
  NOT HISPANIC OR LATINO                            430
[1] 2 2
[1] FALSE

Clustering(54) Variable = DEL PEAK 25(11Q25) MUTATION ANALYSIS
D54V1, survival
                              sevent
clus2                            0   1
  DEL PEAK 25(11Q25) MUTATED   436  60
  DEL PEAK 25(11Q25) WILD-TYPE 480  68
  DEL PEAK 25(11Q25) MUTATED DEL PEAK 25(11Q25) WILD-TYPE 
                         496                          548 
  DEL PEAK 25(11Q25) MUTATED DEL PEAK 25(11Q25) WILD-TYPE 
                          60                           68 
$`DEL PEAK 25(11Q25) MUTATED`
TCGA-3C-AAAU TCGA-3C-AALI TCGA-3C-AALK TCGA-4H-AAAK TCGA-5T-A9QA TCGA-A1-A0SD 
      129.14       131.67        40.14        11.44         9.96        14.37 
TCGA-A1-A0SE TCGA-A1-A0SH TCGA-A1-A0SJ TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SO 
       43.43        47.24        13.68         7.96        39.32        28.01 
TCGA-A1-A0SP TCGA-A1-A0SQ TCGA-A2-A04P TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04U 
       19.20        18.21        18.02       121.94        73.84        87.25 
TCGA-A2-A04V TCGA-A2-A04X TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO 
       63.12        55.43       136.73        99.12        24.79       114.81 
TCGA-A2-A0CT TCGA-A2-A0CW TCGA-A2-A0CX TCGA-A2-A0D4 TCGA-A2-A0EQ TCGA-A2-A0ER 
       75.25       107.93        56.81        25.22        79.76        74.40 
TCGA-A2-A0ET TCGA-A2-A0EW TCGA-A2-A0SU TCGA-A2-A0SX TCGA-A2-A0SY TCGA-A2-A0T1 
       35.05        61.94        54.64        50.43        44.28        17.13 
TCGA-A2-A0T3 TCGA-A2-A0T4 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YE TCGA-A2-A0YF 
       49.84        20.52        20.75        32.55        18.21        50.47 
TCGA-A2-A0YI TCGA-A2-A0YK TCGA-A2-A0YM TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1FX 
       49.48        19.33        31.73        23.47        17.36        60.72 
TCGA-A2-A25B TCGA-A2-A25C TCGA-A2-A25E TCGA-A2-A3KC TCGA-A2-A3KD TCGA-A2-A3XS 
       42.44        17.19       105.34        20.88        39.65        33.93 
TCGA-A2-A3XT TCGA-A2-A3XW TCGA-A2-A3XX TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4S2 
       83.01        49.48        47.31        38.37         7.30        21.14 
TCGA-A2-A4S3 TCGA-A7-A0CE TCGA-A7-A0DA TCGA-A7-A0DC TCGA-A7-A13D TCGA-A7-A13E 
       21.90        35.31        35.67        29.79        31.73        20.19 
TCGA-A7-A13F TCGA-A7-A13H TCGA-A7-A26E TCGA-A7-A26I TCGA-A7-A26J TCGA-A7-A2KD 
       25.15        29.56        31.36        21.73        20.61        22.32 
TCGA-A7-A3IZ TCGA-A7-A3J1 TCGA-A7-A4SA TCGA-A7-A4SB TCGA-A7-A4SD TCGA-A7-A4SE 
       10.59        11.28        14.93        13.74        14.50        21.17 
TCGA-A7-A4SF TCGA-A7-A56D TCGA-A7-A5ZV TCGA-A7-A6VV TCGA-A7-A6VW TCGA-A7-A6VX 
       17.92        14.73        12.10        10.29         9.37        10.42 
TCGA-A7-A6VY TCGA-A8-A06O TCGA-A8-A06Q TCGA-A8-A06T TCGA-A8-A06U TCGA-A8-A06X 
        8.75        13.02         1.02        53.06        29.03        31.00 
TCGA-A8-A075 TCGA-A8-A07B TCGA-A8-A07E TCGA-A8-A07I TCGA-A8-A07L TCGA-A8-A07P 
       17.03        43.00        19.99        14.01        32.05        10.98 
TCGA-A8-A07W TCGA-A8-A082 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08F TCGA-A8-A08G 
        9.99        18.05        13.02         0.99        33.01        19.96 
TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08O TCGA-A8-A08P TCGA-A8-A08R 
       12.00        37.05         9.99        31.00        31.00         0.99 
TCGA-A8-A08S TCGA-A8-A08X TCGA-A8-A091 TCGA-A8-A093 TCGA-A8-A097 TCGA-A8-A09A 
       33.01        43.00        33.01        17.95        12.00         9.99 
TCGA-A8-A09B TCGA-A8-A09C TCGA-A8-A09D TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K 
       12.00         1.02        50.04        49.05        45.07        29.98 
TCGA-A8-A09M TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 
       33.07         8.98        19.04        12.00        19.04        13.02 
TCGA-A8-A0A6 TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-AC-A23C TCGA-AC-A23E TCGA-AC-A2B8 
       21.04        27.02        17.03         0.95         2.37         1.48 
TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FG TCGA-AC-A2FM TCGA-AC-A2FO 
       38.53        99.35        40.57        36.99        26.04        50.70 
TCGA-AC-A2QH TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3W5 TCGA-AC-A62V TCGA-AC-A6IV 
       33.04        16.31        14.83        16.57        11.44        18.67 
TCGA-AC-A6IW TCGA-AC-A6IX TCGA-AC-A7VC TCGA-AC-A8OQ TCGA-AN-A03X TCGA-AN-A03Y 
       13.58        12.26         0.03         1.12         0.33         0.33 
TCGA-AN-A041 TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A0AJ TCGA-AN-A0AK 
        0.23         0.62         2.96         1.78         9.96         7.36 
TCGA-AN-A0AT TCGA-AN-A0FJ TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FW 
        0.33         7.96         6.28         7.04         0.33         0.36 
TCGA-AN-A0FZ TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XW 
        0.33         0.33         0.33         0.33         0.33         5.59 
TCGA-AO-A03L TCGA-AO-A03M TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03T TCGA-AO-A03V 
       80.28        61.35        81.63        95.70        47.87        29.13 
TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J4 TCGA-AO-A0J6 TCGA-AO-A0J7 TCGA-AO-A0J9 
       32.78        21.40        52.18        37.48        20.32        53.03 
TCGA-AO-A0JA TCGA-AO-A0JD TCGA-AO-A0JE TCGA-AO-A0JG TCGA-AO-A0JL TCGA-AO-A0JM 
       21.53        72.00        76.77        26.24        55.33        71.80 
TCGA-AO-A124 TCGA-AO-A129 TCGA-AO-A12E TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A1KQ 
      102.58       108.03        57.30        48.36        41.62        61.87 
TCGA-AO-A1KS TCGA-AO-A1KT TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A1H2 TCGA-AQ-A54N 
        0.53        17.79        24.79        26.93        15.62         2.56 
TCGA-AQ-A54O TCGA-AR-A0TT TCGA-AR-A0TV TCGA-AR-A0TZ TCGA-AR-A0U0 TCGA-AR-A0U1 
       32.91        86.66        42.35       107.24        65.36       101.95 
TCGA-AR-A0U2 TCGA-AR-A0U3 TCGA-AR-A0U4 TCGA-AR-A1AI TCGA-AR-A1AK TCGA-AR-A1AM 
       83.87       114.02        85.97        61.84        51.25        76.11 
TCGA-AR-A1AP TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A24H TCGA-AR-A24L TCGA-AR-A24Q 
       39.98        76.21        61.28       160.90        94.22       104.28 
TCGA-AR-A24R TCGA-AR-A24T TCGA-AR-A24V TCGA-AR-A250 TCGA-AR-A251 TCGA-AR-A255 
       87.22        76.01        85.35        89.00        78.48        58.92 
TCGA-AR-A256 TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LL TCGA-AR-A2LO TCGA-B6-A0I9 
       93.83        62.86        54.21        66.15        39.39        12.13 
TCGA-B6-A0IB TCGA-B6-A0IG TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0RG TCGA-B6-A0RL 
      129.57       146.50       176.98        18.77        68.45        81.17 
TCGA-B6-A0RU TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0WX 
      131.21       157.41        97.48        79.63        18.35        21.47 
TCGA-B6-A0WY TCGA-B6-A0X7 TCGA-B6-A1KF TCGA-B6-A1KN TCGA-B6-A402 TCGA-B6-A40B 
      113.79        58.88       101.52       139.17        74.99       103.63 
TCGA-BH-A0AU TCGA-BH-A0AV TCGA-BH-A0AZ TCGA-BH-A0B5 TCGA-BH-A0B9 TCGA-BH-A0BA 
       24.53        59.84        28.50        48.36        51.68        37.22 
TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BG TCGA-BH-A0BL TCGA-BH-A0BP TCGA-BH-A0BR 
       32.02        18.21        24.85        44.05        48.69        53.69 
TCGA-BH-A0BV TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0C3 TCGA-BH-A0C7 
       49.94        49.05        41.75        44.02        48.13        42.90 
TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DQ 
       45.83        31.17        23.44        22.13        13.91         3.22 
TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E2 TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0H0 
       16.27         4.41        14.30        31.00        24.43        15.16 
TCGA-BH-A0H7 TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HK TCGA-BH-A0HP TCGA-BH-A0HU 
       23.08        52.96        26.50         5.85        13.61        12.89 
TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0W3 TCGA-BH-A0WA TCGA-BH-A18I 
       51.32        27.25        50.79        23.93        23.05         7.23 
TCGA-BH-A18J TCGA-BH-A18L TCGA-BH-A18M TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18R 
       20.12        26.66        72.56        30.28        55.63        37.55 
TCGA-BH-A18V TCGA-BH-A1EN TCGA-BH-A1ES TCGA-BH-A1EU TCGA-BH-A1EW TCGA-BH-A1F2 
       51.16        69.93       113.82        42.28        55.69        31.53 
TCGA-BH-A1F8 TCGA-BH-A1FC TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FN TCGA-BH-A201 
       24.66       114.15        33.17        74.73        72.07        28.14 
TCGA-BH-A204 TCGA-BH-A28Q TCGA-BH-A42T TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-BH-A8FY 
       83.31         6.44        10.52        18.64        23.51         9.70 
TCGA-BH-AB28 TCGA-C8-A12M TCGA-C8-A12Q TCGA-C8-A12U TCGA-C8-A12W TCGA-C8-A130 
        9.44        11.77        12.66        12.66        12.66         3.16 
TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A135 TCGA-C8-A137 TCGA-C8-A138 TCGA-C8-A1HF 
        1.87         1.12         1.05         4.11         4.08        10.92 
TCGA-C8-A1HG TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HL TCGA-C8-A26W TCGA-C8-A26X 
       11.34         0.16        12.03        10.42         0.23         0.36 
TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A3M8 TCGA-C8-A8HP 
        0.43         8.28        12.20         0.99         0.23        13.02 
TCGA-C8-A8HQ TCGA-C8-A9FZ TCGA-D8-A13Y TCGA-D8-A13Z TCGA-D8-A140 TCGA-D8-A145 
       12.49        19.46        11.90        20.88        13.25        13.48 
TCGA-D8-A147 TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JC TCGA-D8-A1JD TCGA-D8-A1JE 
       19.20        14.17        17.49        15.78        18.15        18.90 
TCGA-D8-A1JI TCGA-D8-A1JM TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X8 TCGA-D8-A1X9 
       18.97        19.40        18.58        17.79        25.74        23.90 
TCGA-D8-A1XF TCGA-D8-A1XS TCGA-D8-A1XU TCGA-D8-A1Y0 TCGA-D8-A1Y2 TCGA-D8-A27F 
       15.22        16.31        12.99        15.52        14.24        16.04 
TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27I TCGA-D8-A27N TCGA-D8-A27R TCGA-D8-A27V 
       13.45        13.05        14.43         4.80        10.09        12.53 
TCGA-D8-A27W TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10E 
       12.26        43.00        34.42        46.59        40.41        28.44 
TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14V TCGA-E2-A14W TCGA-E2-A14Y TCGA-E2-A150 
       47.15        44.68        34.26        32.02        28.60        25.41 
TCGA-E2-A155 TCGA-E2-A158 TCGA-E2-A15A TCGA-E2-A15E TCGA-E2-A15G TCGA-E2-A15K 
       21.04        14.79        23.34        20.71        18.21         9.04 
TCGA-E2-A15M TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1B5 
       11.05        19.56        17.06        14.07        14.99        32.35 
TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IH TCGA-E2-A1IU TCGA-E2-A1L7 TCGA-E2-A1L8 
       17.10        38.30        33.73        11.08        27.42        39.62 
TCGA-E2-A1LA TCGA-E2-A1LL TCGA-E2-A2P5 TCGA-E2-A2P6 TCGA-E2-A56Z TCGA-E2-A576 
       24.59        43.04        16.93         5.52         8.28        34.29 
TCGA-E2-A9RU TCGA-E9-A1N5 TCGA-E9-A1N8 TCGA-E9-A1N9 TCGA-E9-A1NA TCGA-E9-A1NC 
       12.85        36.82        12.00        13.12        36.56        39.55 
TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R2 TCGA-E9-A1R7 
       35.24        25.84         9.86        11.90        34.95        21.21 
TCGA-E9-A1RF TCGA-E9-A1RI TCGA-E9-A22B TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A22G 
        6.58        35.64        22.75        41.03        12.89        23.51 
TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A247 TCGA-E9-A295 TCGA-E9-A3HO TCGA-E9-A3QA 
       20.71        17.06        27.22         0.72        26.07        30.18 
TCGA-E9-A5FL TCGA-E9-A5UO TCGA-E9-A5UP TCGA-E9-A6HE TCGA-EW-A1IW TCGA-EW-A1J1 
        0.79        13.81        14.40        15.39        12.20        18.90 
TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J5 TCGA-EW-A1OV TCGA-EW-A1OX TCGA-EW-A1OY 
       13.25        16.57        15.68        25.94        29.95        29.85 
TCGA-EW-A1OZ TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A1PA TCGA-EW-A1PB TCGA-EW-A1PC 
       40.41        29.82        23.11        18.90        19.99         6.15 
TCGA-EW-A1PD TCGA-EW-A1PF TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A3U0 TCGA-EW-A423 
       13.94        14.43        55.00        52.73        17.49        10.16 
TCGA-EW-A424 TCGA-GM-A2D9 TCGA-GM-A2DD TCGA-GM-A2DF TCGA-GM-A2DL TCGA-GM-A2DO 
       23.51        59.57        75.02        70.85       115.69        85.35 
TCGA-GM-A3NW TCGA-GM-A3XL TCGA-LD-A7W6 TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A5YO 
      110.50        69.30        13.28        15.32        14.70        14.47 
TCGA-LL-A6FQ TCGA-LL-A6FR TCGA-LL-A73Z TCGA-LL-A7SZ TCGA-LL-A7T0 TCGA-LL-A8F5 
        2.63        16.08         7.46        14.70        12.36        14.73 
TCGA-LQ-A4E4 TCGA-OK-A5Q2 TCGA-OL-A5D7 TCGA-OL-A5DA TCGA-OL-A5RW TCGA-OL-A5RY 
       27.91         2.10        58.52        58.62        36.36        24.72 
TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66J TCGA-OL-A66K TCGA-OL-A66O TCGA-OL-A66P 
       22.32        20.38        65.62        41.92        17.36        14.07 
TCGA-OL-A6VO TCGA-PE-A5DC TCGA-PL-A8LX TCGA-S3-A6ZF TCGA-S3-A6ZG TCGA-S3-A6ZH 
       28.21        47.01         0.16        16.50        13.12        16.93 
TCGA-S3-AA0Z TCGA-S3-AA10 TCGA-S3-AA12 TCGA-S3-AA17 TCGA-UL-AAZ6 TCGA-WT-AB41 
       16.80        15.39        15.35        13.94        17.03        52.96 
TCGA-XX-A899 TCGA-XX-A89A TCGA-Z7-A8R5 TCGA-Z7-A8R6 
       15.35        16.04       108.07       107.05 

$`DEL PEAK 25(11Q25) WILD-TYPE`
TCGA-3C-AALJ TCGA-5L-AAT0 TCGA-5L-AAT1 TCGA-A1-A0SB TCGA-A1-A0SF TCGA-A1-A0SG 
       42.81        48.56        48.36         8.52        48.10        14.27 
TCGA-A1-A0SI TCGA-A1-A0SK TCGA-A2-A04N TCGA-A2-A04Q TCGA-A2-A04W TCGA-A2-A04Y 
       20.88        31.79       104.81        78.41       101.98        36.13 
TCGA-A2-A0CP TCGA-A2-A0CQ TCGA-A2-A0CR TCGA-A2-A0CS TCGA-A2-A0CU TCGA-A2-A0CV 
       92.48        88.60       107.93        75.55         5.19        98.99 
TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0EM TCGA-A2-A0EN 
       67.33        34.55        33.76        61.58       101.72       134.40 
TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0ES TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EX 
       80.28       107.61        72.00        34.29        31.82        24.72 
TCGA-A2-A0EY TCGA-A2-A0ST TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0T0 TCGA-A2-A0T2 
       63.29        99.19        27.12        44.88        17.52         8.38 
TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0YD TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A0YJ 
       17.46        18.90        25.28        21.90        21.67        18.61 
TCGA-A2-A0YL TCGA-A2-A0YT TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G1 TCGA-A2-A1G4 
       48.46        23.77        22.45        20.25        19.20        19.56 
TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25A TCGA-A2-A25D TCGA-A2-A25F TCGA-A2-A3XU 
       16.47        52.47       107.70        18.15        10.59        29.98 
TCGA-A2-A3XV TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 
       32.75        34.98        50.37        24.39        21.30        23.21 
TCGA-A2-A4S1 TCGA-A7-A0CD TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0CJ TCGA-A7-A0D9 
       26.96        38.30        34.29        35.47        30.61        37.45 
TCGA-A7-A0DB TCGA-A7-A13G TCGA-A7-A26F TCGA-A7-A26G TCGA-A7-A26H TCGA-A7-A3IY 
       33.11        23.61        24.26        23.74        23.80        11.34 
TCGA-A7-A3J0 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A426 TCGA-A7-A5ZW TCGA-A7-A5ZX 
       10.29        13.41        14.70        11.97        10.72        11.05 
TCGA-A8-A06P TCGA-A8-A06R TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A076 TCGA-A8-A079 
       13.02        17.98        26.01         1.02        53.98         9.01 
TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07J TCGA-A8-A07O TCGA-A8-A07R TCGA-A8-A07S 
       18.97        18.97        12.00         9.99         8.98         7.99 
TCGA-A8-A07U TCGA-A8-A07Z TCGA-A8-A084 TCGA-A8-A085 TCGA-A8-A08B TCGA-A8-A08C 
       24.99        45.07        15.06        36.95        38.01        28.96 
TCGA-A8-A08T TCGA-A8-A08Z TCGA-A8-A092 TCGA-A8-A095 TCGA-A8-A099 TCGA-A8-A09N 
      112.08        40.01        30.97        41.98         9.99         1.02 
TCGA-A8-A09Q TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A09X TCGA-A8-A0A7 TCGA-A8-A0AD 
       25.02        15.02         0.99        14.01         0.99        38.04 
TCGA-AC-A23G TCGA-AC-A23H TCGA-AC-A2FF TCGA-AC-A2FK TCGA-AC-A2QI TCGA-AC-A2QJ 
       10.85         5.72        55.43        38.79         0.92         2.27 
TCGA-AC-A3BB TCGA-AC-A3QP TCGA-AC-A3TN TCGA-AC-A3W6 TCGA-AC-A3YI TCGA-AC-A3YJ 
       32.45        22.19        14.99        19.79        23.24        24.79 
TCGA-AC-A5XS TCGA-AC-A62X TCGA-AC-A62Y TCGA-AC-A6NO TCGA-AC-A7VB TCGA-AC-A8OP 
        1.55        13.71        17.42         1.68         8.22        20.19 
TCGA-AC-A8OR TCGA-AC-A8OS TCGA-AN-A046 TCGA-AN-A04D TCGA-AN-A0AL TCGA-AN-A0AM 
        1.32         2.30         0.33         1.71         6.51         0.16 
TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FK TCGA-AN-A0FL 
        0.33         0.33         6.44         5.65         7.00         7.59 
TCGA-AN-A0FN TCGA-AN-A0FX TCGA-AN-A0FY TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XR 
        7.17         0.33         0.33        12.33         0.30         0.33 
TCGA-AN-A0XU TCGA-AN-A0XV TCGA-AO-A03N TCGA-AO-A03R TCGA-AO-A03U TCGA-AO-A0J5 
        0.33         5.33        66.77        68.75        58.95        26.04 
TCGA-AO-A0J8 TCGA-AO-A0JB TCGA-AO-A0JC TCGA-AO-A0JF TCGA-AO-A0JI TCGA-AO-A0JJ 
       22.36        50.70        50.86        21.37        50.24        62.04 
TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12D 
       99.25       108.72       106.78        90.58        98.27        64.04 
TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KR TCGA-AQ-A04L TCGA-AQ-A0Y5 
       28.37        14.73        82.62        70.39       130.09         5.65 
TCGA-AQ-A1H3 TCGA-AQ-A7U7 TCGA-AR-A0TP TCGA-AR-A0TQ TCGA-AR-A0TR TCGA-AR-A0TS 
       32.52        19.20       111.32        73.64         5.26        74.79 
TCGA-AR-A0TW TCGA-AR-A0TX TCGA-AR-A0TY TCGA-AR-A1AH TCGA-AR-A1AJ TCGA-AR-A1AL 
       98.93        64.83        55.86        75.55        52.77        48.82 
TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AQ TCGA-AR-A1AR TCGA-AR-A1AS TCGA-AR-A1AW 
       43.73        43.56        43.07        17.23        37.81        63.62 
TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24K TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O 
       62.14        33.73        50.89        96.89        78.51        84.20 
TCGA-AR-A24P TCGA-AR-A24S TCGA-AR-A24U TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A24Z 
        2.76        97.84        53.36        50.96        83.77        79.00 
TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LM TCGA-AR-A2LN 
       73.18        72.76       143.21        20.25        52.11        38.17 
TCGA-AR-A2LQ TCGA-AR-A2LR TCGA-AR-A5QM TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ 
       40.54        20.38        54.74        16.04        20.45        10.59 
TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0IA TCGA-B6-A0IC TCGA-B6-A0IE 
       77.62       143.38       149.59       220.90        50.70        65.72 
TCGA-B6-A0IH TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IO TCGA-B6-A0IP TCGA-B6-A0IQ 
      112.37       126.12        84.59       110.14       110.93       140.88 
TCGA-B6-A0RE TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RM TCGA-B6-A0RN TCGA-B6-A0RO 
      211.56       189.01       234.28        78.02       172.96       162.05 
TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RS TCGA-B6-A0RT TCGA-B6-A0WT TCGA-B6-A0WZ 
      102.77       140.48       100.70        89.46       188.68       129.57 
TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A1KC TCGA-B6-A1KI 
      129.70       186.48        28.27        68.94        43.59        73.51 
TCGA-B6-A2IU TCGA-B6-A401 TCGA-B6-A408 TCGA-B6-A40C TCGA-BH-A0AW TCGA-BH-A0AY 
      170.17        85.35        68.12        71.15        20.45        25.55 
TCGA-BH-A0B0 TCGA-BH-A0B2 TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B6 TCGA-BH-A0B7 
       46.95        40.83        39.55        39.16        56.94        56.98 
TCGA-BH-A0BF TCGA-BH-A0BJ TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BQ TCGA-BH-A0BS 
       25.71        21.70        61.68        35.67        27.19        53.95 
TCGA-BH-A0BT TCGA-BH-A0BW TCGA-BH-A0DH TCGA-BH-A0DL TCGA-BH-A0DO TCGA-BH-A0DP 
       45.57        11.67        38.01        48.23        17.26        15.65 
TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0E1 TCGA-BH-A0E6 
        2.56        38.47        67.86        47.41        15.68         9.63 
TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EA TCGA-BH-A0EB TCGA-BH-A0GY TCGA-BH-A0GZ 
       44.81        46.19        32.58        24.49        30.35        10.78 
TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H9 TCGA-BH-A0HI TCGA-BH-A0HO 
       37.78        35.51        24.56        41.00        20.38         2.50 
TCGA-BH-A0HQ TCGA-BH-A0RX TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A18F 
       36.85         5.59        24.95        42.35        44.81         8.81 
TCGA-BH-A18G TCGA-BH-A18K TCGA-BH-A18N TCGA-BH-A18S TCGA-BH-A18T TCGA-BH-A18U 
        2.01        90.84        37.74        66.05         7.36        51.39 
TCGA-BH-A1EO TCGA-BH-A1ET TCGA-BH-A1EV TCGA-BH-A1EX TCGA-BH-A1EY TCGA-BH-A1F0 
       91.99        82.85        12.00        49.58        17.69        25.81 
TCGA-BH-A1F5 TCGA-BH-A1F6 TCGA-BH-A1FB TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ 
       89.16        97.48       120.62       122.89        36.92        63.35 
TCGA-BH-A1FL TCGA-BH-A1FM TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A202 TCGA-BH-A203 
       55.00        45.63       144.59        72.07        26.14        38.60 
TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A2L8 TCGA-BH-A42U TCGA-BH-A42V 
       57.83       130.16        10.65        20.12       109.28         8.94 
TCGA-BH-A6R8 TCGA-BH-A6R9 TCGA-BH-A8FZ TCGA-BH-A8G0 TCGA-C8-A12L TCGA-C8-A12N 
        9.63         5.26        18.87        21.76        11.93        11.77 
TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12V TCGA-C8-A12X TCGA-C8-A12Z TCGA-C8-A131 
       12.66        11.77        12.66        12.66         0.39         2.24 
TCGA-C8-A1HE TCGA-C8-A1HI TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A26V TCGA-C8-A273 
       12.33        11.28         2.30         3.25         0.30         9.67 
TCGA-C8-A274 TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A3M7 TCGA-C8-A8HR TCGA-D8-A141 
        9.53         0.03         9.50         0.03        13.41        20.58 
TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A146 TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JF 
       13.97        14.17        21.14        16.50        18.71        12.03 
TCGA-D8-A1JG TCGA-D8-A1JH TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JN 
       12.03        14.01        20.09        20.12        20.09        20.38 
TCGA-D8-A1JP TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X7 TCGA-D8-A1XA 
       21.01        12.20        13.32        14.70        16.73        27.58 
TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XD TCGA-D8-A1XG TCGA-D8-A1XJ TCGA-D8-A1XK 
       18.15        12.39        17.16        14.73        21.83        14.50 
TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XQ TCGA-D8-A1XR TCGA-D8-A1XT 
       19.92        17.69        15.55        16.41        15.85         6.35 
TCGA-D8-A1XV TCGA-D8-A1XW TCGA-D8-A1XY TCGA-D8-A1XZ TCGA-D8-A1Y1 TCGA-D8-A1Y3 
       15.16        12.66        16.54        15.32         9.93        14.14 
TCGA-D8-A27E TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27P TCGA-D8-A27T 
       17.42         9.44        16.41        13.48         0.76        13.08 
TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-D8-A73U TCGA-D8-A73W TCGA-D8-A73X 
       33.37        18.51        21.67        16.18         8.02        12.10 
TCGA-E2-A108 TCGA-E2-A10B TCGA-E2-A10C TCGA-E2-A10F TCGA-E2-A14P TCGA-E2-A14Q 
       27.52        37.51        40.11        28.87        40.96        38.24 
TCGA-E2-A14R TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14X TCGA-E2-A14Z 
       38.60        33.17        33.30        43.33        31.96        18.51 
TCGA-E2-A152 TCGA-E2-A153 TCGA-E2-A154 TCGA-E2-A156 TCGA-E2-A159 TCGA-E2-A15C 
       27.12        23.24        19.43        23.87        25.05        22.82 
TCGA-E2-A15D TCGA-E2-A15F TCGA-E2-A15H TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15L 
       17.29        21.63        12.92        17.42        19.40        20.58 
TCGA-E2-A15O TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B6 
       13.02        60.53        53.62        53.03        33.01        28.50 
TCGA-E2-A1BC TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IK 
       16.47        37.41        32.78        33.70        28.44        22.65 
TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IO TCGA-E2-A1L6 TCGA-E2-A1L9 TCGA-E2-A1LB 
        3.88        22.19        20.98        54.18        19.66        40.47 
TCGA-E2-A1LE TCGA-E2-A1LG TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A3DX 
       28.90        18.87       106.75       102.61         8.75        15.72 
TCGA-E2-A570 TCGA-E2-A573 TCGA-E2-A574 TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N6 
       30.61        34.92        26.56        34.82        32.88        13.48 
TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1R0 TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R5 
       12.59        35.77        28.27         2.56         6.12         3.02 
TCGA-E9-A1R6 TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RD TCGA-E9-A1RE 
        2.76        32.09        32.09        40.24         1.12        34.65 
TCGA-E9-A1RG TCGA-E9-A1RH TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 
       21.27        34.59        34.13        32.05        12.53        13.32 
TCGA-E9-A22A TCGA-E9-A244 TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A2JS 
       39.09         0.69         1.94         7.13        24.56        29.72 
TCGA-E9-A2JT TCGA-E9-A3Q9 TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A54Y TCGA-E9-A5FK 
        0.76        18.41        15.72        12.33        23.84        14.70 
TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J6 TCGA-EW-A1OW TCGA-EW-A1P0 
       39.72         8.48        18.21        28.77        22.82        41.13 
TCGA-EW-A1P1 TCGA-EW-A1P3 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1P8 TCGA-EW-A1PE 
       39.78        52.96        18.48        30.08         7.86        10.52 
TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FV TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-GI-A2C8 
       34.55        19.96        25.91        22.09        34.03         7.40 
TCGA-GI-A2C9 TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DC TCGA-GM-A2DH TCGA-GM-A2DI 
      109.87       216.76        79.10        83.34        72.10        85.15 
TCGA-GM-A2DK TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XN 
       86.96       106.06       101.62        38.20        43.73        66.38 
TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2NL TCGA-HN-A2OB TCGA-JL-A3YW 
       72.03        13.55        18.12         2.60        62.43        11.84 
TCGA-JL-A3YX TCGA-LD-A66U TCGA-LD-A74U TCGA-LD-A7W5 TCGA-LD-A9QF TCGA-LL-A440 
       11.57        21.24        13.22         7.10        10.62        24.95 
TCGA-LL-A441 TCGA-LL-A442 TCGA-LL-A50Y TCGA-LL-A5YL TCGA-LL-A5YP TCGA-LL-A6FP 
       11.44        10.95        25.05        17.06        14.79        22.26 
TCGA-LL-A73Y TCGA-LL-A740 TCGA-LL-A9Q3 TCGA-MS-A51U TCGA-OL-A5D6 TCGA-OL-A5D8 
       15.68        14.50        14.07        22.39        36.30        31.99 
TCGA-OL-A5RU TCGA-OL-A5RV TCGA-OL-A5RX TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66L 
       40.08        34.92        28.87        26.70        23.47        42.77 
TCGA-OL-A66N TCGA-OL-A6VQ TCGA-OL-A6VR TCGA-OL-A97C TCGA-PE-A5DD TCGA-PE-A5DE 
       26.04        19.73        40.11         8.91        64.21        86.96 
TCGA-PL-A8LY TCGA-PL-A8LZ TCGA-S3-AA11 TCGA-S3-AA14 TCGA-S3-AA15 TCGA-UU-A93S 
        0.26         9.93        13.84        14.96        13.84         3.81 
TCGA-W8-A86G TCGA-WT-AB44 
       11.41        29.03 

  DEL PEAK 25(11Q25) MUTATED DEL PEAK 25(11Q25) WILD-TYPE 
                        0.03                         0.03 
  DEL PEAK 25(11Q25) MUTATED DEL PEAK 25(11Q25) WILD-TYPE 
                      176.98                       234.28 
  DEL PEAK 25(11Q25) MUTATED DEL PEAK 25(11Q25) WILD-TYPE 
                       23.39                        25.05 
[1] "0.0 - 177.0 (23.4)" "0.0 - 234.3 (25.1)"
[1] "hr=" "1.2"
D54V2, continuous
                              vv
clus                           STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  DEL PEAK 25(11Q25) MUTATED        31       31        3        1       163
  DEL PEAK 25(11Q25) WILD-TYPE      58       50        5        2       190
                              vv
clus                           STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  DEL PEAK 25(11Q25) MUTATED         132         1         85         12
  DEL PEAK 25(11Q25) WILD-TYPE       113         1         65         17
                              vv
clus                           STAGE IIIC STAGE IV STAGE TIS STAGE X
  DEL PEAK 25(11Q25) MUTATED           26       10         0       8
  DEL PEAK 25(11Q25) WILD-TYPE         37       10         1       5
D54V3, multiclass
            clus
vv           DEL PEAK 25(11Q25) MUTATED DEL PEAK 25(11Q25) WILD-TYPE
  STAGE I                            31                           58
  STAGE IA                           31                           50
  STAGE IB                            3                            5
  STAGE II                            1                            2
  STAGE IIA                         163                          190
  STAGE IIB                         132                          113
  STAGE III                           1                            1
  STAGE IIIA                         85                           65
  STAGE IIIB                         12                           17
  STAGE IIIC                         26                           37
  STAGE IV                           10                           10
  STAGE TIS                           0                            1
  STAGE X                             8                            5
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                            T1  T2  T3  T4
  DEL PEAK 25(11Q25) MUTATED   105 312  70  17
  DEL PEAK 25(11Q25) WILD-TYPE 167 304  60  23
D54V4, multiclass
    clus
vv   DEL PEAK 25(11Q25) MUTATED DEL PEAK 25(11Q25) WILD-TYPE
  T1                        105                          167
  T2                        312                          304
  T3                         70                           60
  T4                         17                           23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                            N0  N1  N2  N3
  DEL PEAK 25(11Q25) MUTATED   221 180  64  30
  DEL PEAK 25(11Q25) WILD-TYPE 280 170  53  45
D54V5, multiclass
    clus
vv   DEL PEAK 25(11Q25) MUTATED DEL PEAK 25(11Q25) WILD-TYPE
  N0                        221                          280
  N1                        180                          170
  N2                         64                           53
  N3                         30                           45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D54V6, binary
                              cls
clus                             0   1
  DEL PEAK 25(11Q25) MUTATED   410  11
  DEL PEAK 25(11Q25) WILD-TYPE 469  10
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 25(11Q25) MUTATED    410   11
  DEL PEAK 25(11Q25) WILD-TYPE  469   10
   clus
vv  DEL PEAK 25(11Q25) MUTATED DEL PEAK 25(11Q25) WILD-TYPE
  0                        410                          469
  1                         11                           10
[1] 2 2
[1] FALSE
D54V7, binary
                              cls
clus                             0   1
  DEL PEAK 25(11Q25) MUTATED   496   9
  DEL PEAK 25(11Q25) WILD-TYPE 555   2
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 25(11Q25) MUTATED    496    9
  DEL PEAK 25(11Q25) WILD-TYPE  555    2
        clus
vv       DEL PEAK 25(11Q25) MUTATED DEL PEAK 25(11Q25) WILD-TYPE
  FEMALE                        496                          555
  MALE                            9                            2
[1] 2 2
[1] FALSE
                              vv
clus                           INFILTRATING CARCINOMA NOS
  DEL PEAK 25(11Q25) MUTATED                            1
  DEL PEAK 25(11Q25) WILD-TYPE                          0
                              vv
clus                           INFILTRATING DUCTAL CARCINOMA
  DEL PEAK 25(11Q25) MUTATED                             374
  DEL PEAK 25(11Q25) WILD-TYPE                           389
                              vv
clus                           INFILTRATING LOBULAR CARCINOMA
  DEL PEAK 25(11Q25) MUTATED                               88
  DEL PEAK 25(11Q25) WILD-TYPE                            104
                              vv
clus                           MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  DEL PEAK 25(11Q25) MUTATED                     5                     3
  DEL PEAK 25(11Q25) WILD-TYPE                   1                     1
                              vv
clus                           MIXED HISTOLOGY (PLEASE SPECIFY)
  DEL PEAK 25(11Q25) MUTATED                                 16
  DEL PEAK 25(11Q25) WILD-TYPE                               14
                              vv
clus                           MUCINOUS CARCINOMA OTHER  SPECIFY
  DEL PEAK 25(11Q25) MUTATED                    5             12
  DEL PEAK 25(11Q25) WILD-TYPE                 12             36
D54V8, multiclass
                                  clus
vv                                 DEL PEAK 25(11Q25) MUTATED
  INFILTRATING CARCINOMA NOS                                1
  INFILTRATING DUCTAL CARCINOMA                           374
  INFILTRATING LOBULAR CARCINOMA                           88
  MEDULLARY CARCINOMA                                       5
  METAPLASTIC CARCINOMA                                     3
  MIXED HISTOLOGY (PLEASE SPECIFY)                         16
  MUCINOUS CARCINOMA                                        5
  OTHER  SPECIFY                                           12
                                  clus
vv                                 DEL PEAK 25(11Q25) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                  0
  INFILTRATING DUCTAL CARCINOMA                             389
  INFILTRATING LOBULAR CARCINOMA                            104
  MEDULLARY CARCINOMA                                         1
  METAPLASTIC CARCINOMA                                       1
  MIXED HISTOLOGY (PLEASE SPECIFY)                           14
  MUCINOUS CARCINOMA                                         12
  OTHER  SPECIFY                                             36
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D54V9, binary
                              cls
clus                             0   1
  DEL PEAK 25(11Q25) MUTATED   138 367
  DEL PEAK 25(11Q25) WILD-TYPE 150 407
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 25(11Q25) MUTATED    138  367
  DEL PEAK 25(11Q25) WILD-TYPE  150  407
     clus
vv    DEL PEAK 25(11Q25) MUTATED DEL PEAK 25(11Q25) WILD-TYPE
  NO                         138                          150
  YES                        367                          407
[1] 2 2
[1] FALSE
D54V10, continuous
                              vv
clus                           AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 25(11Q25) MUTATED                                  1    29
  DEL PEAK 25(11Q25) WILD-TYPE                                0    31
                              vv
clus                           BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 25(11Q25) MUTATED                         102   320
  DEL PEAK 25(11Q25) WILD-TYPE                        68   416
D54V11, multiclass
                                  clus
vv                                 DEL PEAK 25(11Q25) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                          1
  ASIAN                                                    29
  BLACK OR AFRICAN AMERICAN                               102
  WHITE                                                   320
                                  clus
vv                                 DEL PEAK 25(11Q25) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                            0
  ASIAN                                                      31
  BLACK OR AFRICAN AMERICAN                                  68
  WHITE                                                     416
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D54V12, binary
                              cls
clus                             0   1
  DEL PEAK 25(11Q25) MUTATED    17 399
  DEL PEAK 25(11Q25) WILD-TYPE  21 459
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 25(11Q25) MUTATED     17  399
  DEL PEAK 25(11Q25) WILD-TYPE   21  459
                        clus
vv                       DEL PEAK 25(11Q25) MUTATED
  HISPANIC OR LATINO                             17
  NOT HISPANIC OR LATINO                        399
                        clus
vv                       DEL PEAK 25(11Q25) WILD-TYPE
  HISPANIC OR LATINO                               21
  NOT HISPANIC OR LATINO                          459
[1] 2 2
[1] FALSE

Clustering(55) Variable = DEL PEAK 26(12P13.1) MUTATION ANALYSIS
D55V1, survival
                                sevent
clus2                              0   1
  DEL PEAK 26(12P13.1) MUTATED   152  27
  DEL PEAK 26(12P13.1) WILD-TYPE 764 101
  DEL PEAK 26(12P13.1) MUTATED DEL PEAK 26(12P13.1) WILD-TYPE 
                           179                            865 
  DEL PEAK 26(12P13.1) MUTATED DEL PEAK 26(12P13.1) WILD-TYPE 
                            27                            101 
$`DEL PEAK 26(12P13.1) MUTATED`
TCGA-4H-AAAK TCGA-5L-AAT0 TCGA-A1-A0SI TCGA-A2-A04P TCGA-A2-A0CW TCGA-A2-A0D4 
       11.44        48.56        20.88        18.02       107.93        25.22 
TCGA-A2-A0EN TCGA-A2-A0EV TCGA-A2-A0T0 TCGA-A2-A0T7 TCGA-A2-A0YF TCGA-A2-A259 
      134.40        31.82        17.52        20.75        50.47        52.47 
TCGA-A2-A25B TCGA-A2-A25C TCGA-A2-A3XT TCGA-A2-A3XX TCGA-A2-A4RX TCGA-A2-A4S1 
       42.44        17.19        83.01        47.31        24.39        26.96 
TCGA-A7-A0CJ TCGA-A7-A0DA TCGA-A7-A26I TCGA-A7-A2KD TCGA-A8-A06R TCGA-A8-A06T 
       30.61        35.67        21.73        22.32        17.98        53.06 
TCGA-A8-A075 TCGA-A8-A07G TCGA-A8-A085 TCGA-A8-A08F TCGA-A8-A08X TCGA-A8-A08Z 
       17.03        18.97        36.95        33.01        43.00        40.01 
TCGA-A8-A097 TCGA-A8-A09I TCGA-A8-A09Q TCGA-A8-A09T TCGA-A8-A09W TCGA-AC-A23H 
       12.00        45.07        25.02        19.04         0.99         5.72 
TCGA-AC-A2FM TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A5XS TCGA-AC-A6IV TCGA-AC-A7VB 
       26.04         0.92         2.27         1.55        18.67         8.22 
TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A0AJ TCGA-AN-A0AL TCGA-AN-A0FD TCGA-AN-A0FF 
        0.62         2.96         9.96         6.51         6.44         5.65 
TCGA-AN-A0FL TCGA-AN-A0FV TCGA-AN-A0XN TCGA-AN-A0XU TCGA-AO-A03L TCGA-AO-A03O 
        7.59         0.33         0.33         0.33        80.28        81.63 
TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A0J2 TCGA-AO-A0JL TCGA-AO-A12D TCGA-AQ-A54O 
       68.75        47.87        32.78        55.33        64.04        32.91 
TCGA-AR-A0TR TCGA-AR-A0TY TCGA-AR-A0TZ TCGA-AR-A0U0 TCGA-AR-A0U2 TCGA-AR-A1AH 
        5.26        55.86       107.24        65.36        83.87        75.55 
TCGA-AR-A1AJ TCGA-AR-A1AR TCGA-AR-A24K TCGA-AR-A24M TCGA-AR-A251 TCGA-AR-A252 
       52.77        17.23        50.89        96.89        78.48        73.18 
TCGA-AR-A254 TCGA-AR-A256 TCGA-AR-A2LL TCGA-AR-A2LM TCGA-B6-A0IG TCGA-B6-A0IH 
       72.76        93.83        66.15        52.11       146.50       112.37 
TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0RG TCGA-B6-A0RI TCGA-B6-A0RP TCGA-B6-A0RU 
      176.98        18.77        68.45       234.28       102.77       131.21 
TCGA-B6-A0RV TCGA-B6-A1KF TCGA-B6-A1KN TCGA-B6-A2IU TCGA-BH-A0AZ TCGA-BH-A0B2 
      157.41       101.52       139.17       170.17        28.50        40.83 
TCGA-BH-A0B3 TCGA-BH-A0B7 TCGA-BH-A0BP TCGA-BH-A0BW TCGA-BH-A0C0 TCGA-BH-A0C7 
       39.55        56.98        48.69        11.67        41.75        42.90 
TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DK TCGA-BH-A0DQ TCGA-BH-A0DZ TCGA-BH-A0E6 
       23.44        38.01        13.91         3.22        16.27         9.63 
TCGA-BH-A0EE TCGA-BH-A0H7 TCGA-BH-A0HB TCGA-BH-A0WA TCGA-BH-A1EN TCGA-BH-A1EV 
       31.00        23.08        26.50        23.05        69.93        12.00 
TCGA-BH-A1FG TCGA-BH-A1FM TCGA-BH-A1FN TCGA-BH-A1FU TCGA-BH-A202 TCGA-C8-A12U 
      122.89        45.63        72.07        72.07        26.14        12.66 
TCGA-C8-A131 TCGA-C8-A134 TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HN TCGA-C8-A26Y 
        2.24         1.12        11.34        11.28         3.25         0.43 
TCGA-C8-A274 TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A27B TCGA-D8-A142 TCGA-D8-A1JE 
        9.53         9.50        12.20         0.99        13.97        18.90 
TCGA-D8-A1JG TCGA-D8-A1X5 TCGA-D8-A1X9 TCGA-D8-A1XK TCGA-D8-A1XM TCGA-D8-A1XQ 
       12.03        18.58        23.90        14.50        17.69        16.41 
TCGA-D8-A1XT TCGA-D8-A1XY TCGA-D8-A27F TCGA-D8-A27N TCGA-E2-A10A TCGA-E2-A14Q 
        6.35        16.54        16.04         4.80        40.41        38.24 
TCGA-E2-A14R TCGA-E2-A14Z TCGA-E2-A155 TCGA-E2-A159 TCGA-E2-A15E TCGA-E2-A15M 
       38.60        18.51        21.04        25.05        20.71        11.05 
TCGA-E2-A15P TCGA-E2-A1BD TCGA-E2-A1IO TCGA-E2-A1L8 TCGA-E2-A1LA TCGA-E2-A1LK 
       19.56        17.10        20.98        39.62        24.59         8.75 
TCGA-E2-A1LL TCGA-E2-A9RU TCGA-E9-A1N6 TCGA-E9-A1R4 TCGA-E9-A1RH TCGA-E9-A227 
       43.04        12.85        13.48         6.12        34.59        32.05 
TCGA-E9-A229 TCGA-E9-A248 TCGA-E9-A3QA TCGA-E9-A3X8 TCGA-E9-A5UO TCGA-E9-A5UP 
       13.32         1.94        30.18        15.72        13.81        14.40 
TCGA-EW-A1J6 TCGA-EW-A1OY TCGA-EW-A1P5 TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A2FV 
       28.77        29.85        23.11         6.15        13.94        25.91 
TCGA-GM-A2DI TCGA-GM-A2DK TCGA-LL-A5YM TCGA-LL-A5YP TCGA-LL-A6FR TCGA-LL-A73Z 
       85.15        86.96        15.32        14.79        16.08         7.46 
TCGA-LL-A8F5 TCGA-OL-A5D7 TCGA-OL-A5RU TCGA-OL-A66K TCGA-UU-A93S 
       14.73        58.52        40.08        41.92         3.81 

$`DEL PEAK 26(12P13.1) WILD-TYPE`
TCGA-3C-AAAU TCGA-3C-AALI TCGA-3C-AALJ TCGA-3C-AALK TCGA-5L-AAT1 TCGA-5T-A9QA 
      129.14       131.67        42.81        40.14        48.36         9.96 
TCGA-A1-A0SB TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH 
        8.52        14.37        43.43        48.10        14.27        47.24 
TCGA-A1-A0SJ TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SO TCGA-A1-A0SP 
       13.68        31.79         7.96        39.32        28.01        19.20 
TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04U 
       18.21       104.81        78.41       121.94        73.84        87.25 
TCGA-A2-A04V TCGA-A2-A04W TCGA-A2-A04X TCGA-A2-A04Y TCGA-A2-A0CK TCGA-A2-A0CL 
       63.12       101.98        55.43        36.13       136.73        99.12 
TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CQ TCGA-A2-A0CR TCGA-A2-A0CS 
       24.79       114.81        92.48        88.60       107.93        75.55 
TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CX TCGA-A2-A0D0 TCGA-A2-A0D1 
       75.25         5.19        98.99        56.81        67.33        34.55 
TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0EM TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0EQ 
       33.76        61.58       101.72        80.28       107.61        79.76 
TCGA-A2-A0ER TCGA-A2-A0ES TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EW TCGA-A2-A0EX 
       74.40        72.00        35.05        34.29        61.94        24.72 
TCGA-A2-A0EY TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0SX 
       63.29        99.19        54.64        27.12        44.88        50.43 
TCGA-A2-A0SY TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T4 TCGA-A2-A0T5 
       44.28        17.13         8.38        49.84        20.52        17.46 
TCGA-A2-A0T6 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YE TCGA-A2-A0YG TCGA-A2-A0YH 
       18.90        32.55        25.28        18.21        21.90        21.67 
TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A0YM TCGA-A2-A0YT 
       49.48        18.61        19.33        48.46        31.73        23.77 
TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1FX TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G1 
       23.47        17.36        60.72        22.45        20.25        19.20 
TCGA-A2-A1G4 TCGA-A2-A1G6 TCGA-A2-A25A TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F 
       19.56        16.47       107.70        18.15       105.34        10.59 
TCGA-A2-A3KC TCGA-A2-A3KD TCGA-A2-A3XS TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW 
       20.88        39.65        33.93        29.98        32.75        49.48 
TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4RY TCGA-A2-A4S0 
       34.98        50.37        38.37         7.30        21.30        23.21 
TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CD TCGA-A7-A0CE TCGA-A7-A0CG TCGA-A7-A0CH 
       21.14        21.90        38.30        35.31        34.29        35.47 
TCGA-A7-A0D9 TCGA-A7-A0DB TCGA-A7-A0DC TCGA-A7-A13D TCGA-A7-A13E TCGA-A7-A13F 
       37.45        33.11        29.79        31.73        20.19        25.15 
TCGA-A7-A13G TCGA-A7-A13H TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26G TCGA-A7-A26H 
       23.61        29.56        31.36        24.26        23.74        23.80 
TCGA-A7-A26J TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3J1 TCGA-A7-A3RF 
       20.61        11.34        10.59        10.29        11.28        13.41 
TCGA-A7-A425 TCGA-A7-A426 TCGA-A7-A4SA TCGA-A7-A4SB TCGA-A7-A4SD TCGA-A7-A4SE 
       14.70        11.97        14.93        13.74        14.50        21.17 
TCGA-A7-A4SF TCGA-A7-A56D TCGA-A7-A5ZV TCGA-A7-A5ZW TCGA-A7-A5ZX TCGA-A7-A6VV 
       17.92        14.73        12.10        10.72        11.05        10.29 
TCGA-A7-A6VW TCGA-A7-A6VX TCGA-A7-A6VY TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06Q 
        9.37        10.42         8.75        13.02        13.02         1.02 
TCGA-A8-A06U TCGA-A8-A06X TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A076 TCGA-A8-A079 
       29.03        31.00        26.01         1.02        53.98         9.01 
TCGA-A8-A07B TCGA-A8-A07E TCGA-A8-A07F TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07L 
       43.00        19.99        18.97        14.01        12.00        32.05 
TCGA-A8-A07O TCGA-A8-A07P TCGA-A8-A07R TCGA-A8-A07S TCGA-A8-A07U TCGA-A8-A07W 
        9.99        10.98         8.98         7.99        24.99         9.99 
TCGA-A8-A07Z TCGA-A8-A082 TCGA-A8-A084 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08B 
       45.07        18.05        15.06        13.02         0.99        38.01 
TCGA-A8-A08C TCGA-A8-A08G TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08O 
       28.96        19.96        12.00        37.05         9.99        31.00 
TCGA-A8-A08P TCGA-A8-A08R TCGA-A8-A08S TCGA-A8-A08T TCGA-A8-A091 TCGA-A8-A092 
       31.00         0.99        33.01       112.08        33.01        30.97 
TCGA-A8-A093 TCGA-A8-A095 TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09C 
       17.95        41.98         9.99         9.99        12.00         1.02 
TCGA-A8-A09D TCGA-A8-A09E TCGA-A8-A09K TCGA-A8-A09M TCGA-A8-A09N TCGA-A8-A09R 
       50.04        49.05        29.98        33.07         1.02         8.98 
TCGA-A8-A09V TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A6 
       15.02        14.01        12.00        19.04        13.02        21.04 
TCGA-A8-A0A7 TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23E 
        0.99        27.02        17.03        38.04         0.95         2.37 
TCGA-AC-A23G TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FF 
       10.85         1.48        38.53        99.35        40.57        55.43 
TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FO TCGA-AC-A2QH TCGA-AC-A3BB TCGA-AC-A3HN 
       36.99        38.79        50.70        33.04        32.45        16.31 
TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3TN TCGA-AC-A3W5 TCGA-AC-A3W6 TCGA-AC-A3YI 
       14.83        22.19        14.99        16.57        19.79        23.24 
TCGA-AC-A3YJ TCGA-AC-A62V TCGA-AC-A62X TCGA-AC-A62Y TCGA-AC-A6IW TCGA-AC-A6IX 
       24.79        11.44        13.71        17.42        13.58        12.26 
TCGA-AC-A6NO TCGA-AC-A7VC TCGA-AC-A8OP TCGA-AC-A8OQ TCGA-AC-A8OR TCGA-AC-A8OS 
        1.68         0.03        20.19         1.12         1.32         2.30 
TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A041 TCGA-AN-A046 TCGA-AN-A04C TCGA-AN-A04D 
        0.33         0.33         0.23         0.33         1.78         1.71 
TCGA-AN-A0AK TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FJ 
        7.36         0.16         0.33         0.33         0.33         7.96 
TCGA-AN-A0FK TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FW TCGA-AN-A0FX 
        7.00         7.17         6.28         7.04         0.36         0.33 
TCGA-AN-A0FY TCGA-AN-A0FZ TCGA-AN-A0XL TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XR 
        0.33         0.33         0.33        12.33         0.30         0.33 
TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03M TCGA-AO-A03N 
        0.33         0.33         5.33         5.59        61.35        66.77 
TCGA-AO-A03P TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J3 TCGA-AO-A0J4 TCGA-AO-A0J5 
       95.70        58.95        29.13        21.40        52.18        26.04 
TCGA-AO-A0J6 TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JB 
       37.48        20.32        22.36        53.03        21.53        50.70 
TCGA-AO-A0JC TCGA-AO-A0JD TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JG TCGA-AO-A0JI 
       50.86        72.00        76.77        21.37        26.24        50.24 
TCGA-AO-A0JJ TCGA-AO-A0JM TCGA-AO-A124 TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 
       62.04        71.80       102.58        99.25       108.72       106.78 
TCGA-AO-A129 TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12E TCGA-AO-A12F TCGA-AO-A12G 
      108.03        90.58        98.27        57.30        48.36        41.62 
TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KQ TCGA-AO-A1KR TCGA-AO-A1KS 
       28.37        14.73        82.62        61.87        70.39         0.53 
TCGA-AO-A1KT TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A0Y5 TCGA-AQ-A1H2 
       17.79        24.79        26.93       130.09         5.65        15.62 
TCGA-AQ-A1H3 TCGA-AQ-A54N TCGA-AQ-A7U7 TCGA-AR-A0TP TCGA-AR-A0TQ TCGA-AR-A0TS 
       32.52         2.56        19.20       111.32        73.64        74.79 
TCGA-AR-A0TT TCGA-AR-A0TV TCGA-AR-A0TW TCGA-AR-A0TX TCGA-AR-A0U1 TCGA-AR-A0U3 
       86.66        42.35        98.93        64.83       101.95       114.02 
TCGA-AR-A0U4 TCGA-AR-A1AI TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AM TCGA-AR-A1AN 
       85.97        61.84        51.25        48.82        76.11        43.73 
TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AQ TCGA-AR-A1AS TCGA-AR-A1AU TCGA-AR-A1AV 
       43.56        39.98        43.07        37.81        76.21        61.28 
TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24L TCGA-AR-A24N 
       63.62        62.14        33.73       160.90        94.22        78.51 
TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24Q TCGA-AR-A24R TCGA-AR-A24S TCGA-AR-A24T 
       84.20         2.76       104.28        87.22        97.84        76.01 
TCGA-AR-A24U TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A24Z TCGA-AR-A250 
       53.36        85.35        50.96        83.77        79.00        89.00 
TCGA-AR-A255 TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LN 
       58.92       143.21        20.25        62.86        54.21        38.17 
TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A2LR TCGA-AR-A5QM TCGA-AR-A5QN TCGA-AR-A5QP 
       39.39        40.54        20.38        54.74        16.04        20.45 
TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0I9 TCGA-B6-A0IA 
       10.59        77.62       143.38       149.59        12.13       220.90 
TCGA-B6-A0IB TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IO 
      129.57        50.70        65.72       126.12        84.59       110.14 
TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RH TCGA-B6-A0RL TCGA-B6-A0RM 
      110.93       140.88       211.56       189.01        81.17        78.02 
TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RQ TCGA-B6-A0RS TCGA-B6-A0RT TCGA-B6-A0WS 
      172.96       162.05       140.48       100.70        89.46        97.48 
TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WY TCGA-B6-A0WZ 
      188.68        79.63        18.35        21.47       113.79       129.57 
TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KC 
      129.70       186.48        28.27        68.94        58.88        43.59 
TCGA-B6-A1KI TCGA-B6-A401 TCGA-B6-A402 TCGA-B6-A408 TCGA-B6-A40B TCGA-B6-A40C 
       73.51        85.35        74.99        68.12       103.63        71.15 
TCGA-BH-A0AU TCGA-BH-A0AV TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0B0 TCGA-BH-A0B4 
       24.53        59.84        20.45        25.55        46.95        39.16 
TCGA-BH-A0B5 TCGA-BH-A0B6 TCGA-BH-A0B9 TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BD 
       48.36        56.94        51.68        37.22        32.02        18.21 
TCGA-BH-A0BF TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BM TCGA-BH-A0BO 
       25.71        24.85        21.70        44.05        61.68        35.67 
TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0BZ 
       27.19        53.69        53.95        45.57        49.94        49.05 
TCGA-BH-A0C1 TCGA-BH-A0C3 TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DI TCGA-BH-A0DL 
       44.02        48.13        45.83        31.17        22.13        48.23 
TCGA-BH-A0DO TCGA-BH-A0DP TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX 
       17.26        15.65         2.56        38.47        67.86        47.41 
TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EA 
        4.41        15.68        14.30        44.81        46.19        32.58 
TCGA-BH-A0EB TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 
       24.49        24.43        30.35        10.78        15.16        37.78 
TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0HI TCGA-BH-A0HK 
       35.51        24.56        41.00        52.96        20.38         5.85 
TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HX 
        2.50        13.61        36.85        12.89        51.32        27.25 
TCGA-BH-A0HY TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 
       50.79         5.59        23.93        24.95        42.35        44.81 
TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18K TCGA-BH-A18L 
        8.81         2.01         7.23        20.12        90.84        26.66 
TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18R TCGA-BH-A18S 
       72.56        37.74        30.28        55.63        37.55        66.05 
TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1EO TCGA-BH-A1ES TCGA-BH-A1ET 
        7.36        51.39        51.16        91.99       113.82        82.85 
TCGA-BH-A1EU TCGA-BH-A1EW TCGA-BH-A1EX TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F2 
       42.28        55.69        49.58        17.69        25.81        31.53 
TCGA-BH-A1F5 TCGA-BH-A1F6 TCGA-BH-A1F8 TCGA-BH-A1FB TCGA-BH-A1FC TCGA-BH-A1FD 
       89.16        97.48        24.66       120.62       114.15        33.17 
TCGA-BH-A1FE TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FR TCGA-BH-A201 
       74.73        36.92        63.35        55.00       144.59        28.14 
TCGA-BH-A203 TCGA-BH-A204 TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A28Q 
       38.60        83.31        57.83       130.16        10.65         6.44 
TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5IZ TCGA-BH-A5J0 
       20.12        10.52       109.28         8.94        18.64        23.51 
TCGA-BH-A6R8 TCGA-BH-A6R9 TCGA-BH-A8FY TCGA-BH-A8FZ TCGA-BH-A8G0 TCGA-BH-AB28 
        9.63         5.26         9.70        18.87        21.76         9.44 
TCGA-C8-A12L TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12Q 
       11.93        11.77        11.77        12.66        11.77        12.66 
TCGA-C8-A12V TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A12Z TCGA-C8-A130 TCGA-C8-A132 
       12.66        12.66        12.66         0.39         3.16         1.87 
TCGA-C8-A135 TCGA-C8-A137 TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HJ 
        1.05         4.11         4.08        12.33        10.92         0.16 
TCGA-C8-A1HK TCGA-C8-A1HL TCGA-C8-A1HM TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A26X 
       12.03        10.42         2.30         0.30         0.23         0.36 
TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A275 TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-C8-A8HP 
        8.28         9.67         0.03         0.03         0.23        13.02 
TCGA-C8-A8HQ TCGA-C8-A8HR TCGA-C8-A9FZ TCGA-D8-A13Y TCGA-D8-A13Z TCGA-D8-A140 
       12.49        13.41        19.46        11.90        20.88        13.25 
TCGA-D8-A141 TCGA-D8-A143 TCGA-D8-A145 TCGA-D8-A146 TCGA-D8-A147 TCGA-D8-A1J8 
       20.58        14.17        13.48        21.14        19.20        14.17 
TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JD TCGA-D8-A1JF 
       17.49        16.50        18.71        15.78        18.15        12.03 
TCGA-D8-A1JH TCGA-D8-A1JI TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JM 
       14.01        18.97        20.09        20.12        20.09        19.40 
TCGA-D8-A1JN TCGA-D8-A1JP TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X6 
       20.38        21.01        12.20        13.32        14.70        17.79 
TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XD 
       16.73        25.74        27.58        18.15        12.39        17.16 
TCGA-D8-A1XF TCGA-D8-A1XG TCGA-D8-A1XJ TCGA-D8-A1XL TCGA-D8-A1XO TCGA-D8-A1XR 
       15.22        14.73        21.83        19.92        15.55        15.85 
TCGA-D8-A1XS TCGA-D8-A1XU TCGA-D8-A1XV TCGA-D8-A1XW TCGA-D8-A1XZ TCGA-D8-A1Y0 
       16.31        12.99        15.16        12.66        15.32        15.52 
TCGA-D8-A1Y1 TCGA-D8-A1Y2 TCGA-D8-A1Y3 TCGA-D8-A27E TCGA-D8-A27G TCGA-D8-A27H 
        9.93        14.24        14.14        17.42        13.45        13.05 
TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27P TCGA-D8-A27R 
       14.43         9.44        16.41        13.48         0.76        10.09 
TCGA-D8-A27T TCGA-D8-A27V TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 
       13.08        12.53        12.26        33.37        18.51        21.67 
TCGA-D8-A73U TCGA-D8-A73W TCGA-D8-A73X TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A108 
       16.18         8.02        12.10        43.00        34.42        27.52 
TCGA-E2-A109 TCGA-E2-A10B TCGA-E2-A10C TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N 
       46.59        37.51        40.11        28.44        28.87        47.15 
TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V 
       44.68        40.96        33.17        33.30        43.33        34.26 
TCGA-E2-A14W TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A153 
       32.02        31.96        28.60        25.41        27.12        23.24 
TCGA-E2-A154 TCGA-E2-A156 TCGA-E2-A158 TCGA-E2-A15A TCGA-E2-A15C TCGA-E2-A15D 
       19.43        23.87        14.79        23.34        22.82        17.29 
TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K 
       21.63        18.21        12.92        17.42        19.40         9.04 
TCGA-E2-A15L TCGA-E2-A15O TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1AZ 
       20.58        13.02        17.06        14.07        14.99        60.53 
TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BC 
       53.62        53.03        33.01        32.35        28.50        16.47 
TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1IH TCGA-E2-A1II TCGA-E2-A1IJ 
       38.30        37.41        32.78        33.73        33.70        28.44 
TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L7 
       22.65         3.88        22.19        11.08        54.18        27.42 
TCGA-E2-A1L9 TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LG TCGA-E2-A1LH TCGA-E2-A1LI 
       19.66        40.47        28.90        18.87       106.75       102.61 
TCGA-E2-A2P5 TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A573 
       16.93         5.52        15.72         8.28        30.61        34.92 
TCGA-E2-A574 TCGA-E2-A576 TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N8 
       26.56        34.29        34.82        32.88        36.82        12.00 
TCGA-E9-A1N9 TCGA-E9-A1NA TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NF 
       13.12        36.56        39.55        12.59        35.77        35.24 
TCGA-E9-A1NG TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R3 
       25.84         9.86        11.90        28.27        34.95         2.56 
TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RC 
        3.02         2.76        21.21        32.09        32.09        40.24 
TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RG TCGA-E9-A1RI TCGA-E9-A226 
        1.12        34.65         6.58        21.27        35.64        34.13 
TCGA-E9-A228 TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A22G 
       12.53        39.09        22.75        41.03        12.89        23.51 
TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A244 TCGA-E9-A247 TCGA-E9-A249 TCGA-E9-A24A 
       20.71        17.06         0.69        27.22         7.13        24.56 
TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A54X 
        0.72        29.72         0.76        26.07        18.41        12.33 
TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A6HE TCGA-EW-A1IW TCGA-EW-A1IX 
       23.84        14.70         0.79        15.39        12.20        39.72 
TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J5 
        8.48        18.21        18.90        13.25        16.57        15.68 
TCGA-EW-A1OV TCGA-EW-A1OW TCGA-EW-A1OX TCGA-EW-A1OZ TCGA-EW-A1P0 TCGA-EW-A1P1 
       25.94        22.82        29.95        40.41        41.13        39.78 
TCGA-EW-A1P3 TCGA-EW-A1P4 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1P8 TCGA-EW-A1PA 
       52.96        29.82        18.48        30.08         7.86        18.90 
TCGA-EW-A1PB TCGA-EW-A1PE TCGA-EW-A1PF TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FR 
       19.99        10.52        14.43        34.55        19.96        55.00 
TCGA-EW-A2FS TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A3U0 TCGA-EW-A423 TCGA-EW-A424 
       52.73        22.09        34.03        17.49        10.16        23.51 
TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DC 
        7.40       109.87        59.57       216.76        79.10        83.34 
TCGA-GM-A2DD TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN 
       75.02        70.85        72.10       115.69       106.06       101.62 
TCGA-GM-A2DO TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XL TCGA-GM-A3XN 
       85.35       110.50        38.20        43.73        69.30        66.38 
TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2NL TCGA-HN-A2OB TCGA-JL-A3YW 
       72.03        13.55        18.12         2.60        62.43        11.84 
TCGA-JL-A3YX TCGA-LD-A66U TCGA-LD-A74U TCGA-LD-A7W5 TCGA-LD-A7W6 TCGA-LD-A9QF 
       11.57        21.24        13.22         7.10        13.28        10.62 
TCGA-LL-A440 TCGA-LL-A441 TCGA-LL-A442 TCGA-LL-A50Y TCGA-LL-A5YL TCGA-LL-A5YN 
       24.95        11.44        10.95        25.05        17.06        14.70 
TCGA-LL-A5YO TCGA-LL-A6FP TCGA-LL-A6FQ TCGA-LL-A73Y TCGA-LL-A740 TCGA-LL-A7SZ 
       14.47        22.26         2.63        15.68        14.50        14.70 
TCGA-LL-A7T0 TCGA-LL-A9Q3 TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D6 
       12.36        14.07        27.91        22.39         2.10        36.30 
TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RV TCGA-OL-A5RW TCGA-OL-A5RX TCGA-OL-A5RY 
       31.99        58.62        34.92        36.36        28.87        24.72 
TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66L 
       22.32        20.38        26.70        23.47        65.62        42.77 
TCGA-OL-A66N TCGA-OL-A66O TCGA-OL-A66P TCGA-OL-A6VO TCGA-OL-A6VQ TCGA-OL-A6VR 
       26.04        17.36        14.07        28.21        19.73        40.11 
TCGA-OL-A97C TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE TCGA-PL-A8LX TCGA-PL-A8LY 
        8.91        47.01        64.21        86.96         0.16         0.26 
TCGA-PL-A8LZ TCGA-S3-A6ZF TCGA-S3-A6ZG TCGA-S3-A6ZH TCGA-S3-AA0Z TCGA-S3-AA10 
        9.93        16.50        13.12        16.93        16.80        15.39 
TCGA-S3-AA11 TCGA-S3-AA12 TCGA-S3-AA14 TCGA-S3-AA15 TCGA-S3-AA17 TCGA-UL-AAZ6 
       13.84        15.35        14.96        13.84        13.94        17.03 
TCGA-W8-A86G TCGA-WT-AB41 TCGA-WT-AB44 TCGA-XX-A899 TCGA-XX-A89A TCGA-Z7-A8R5 
       11.41        52.96        29.03        15.35        16.04       108.07 
TCGA-Z7-A8R6 
      107.05 

  DEL PEAK 26(12P13.1) MUTATED DEL PEAK 26(12P13.1) WILD-TYPE 
                          0.33                           0.03 
  DEL PEAK 26(12P13.1) MUTATED DEL PEAK 26(12P13.1) WILD-TYPE 
                        234.28                         220.90 
  DEL PEAK 26(12P13.1) MUTATED DEL PEAK 26(12P13.1) WILD-TYPE 
                         23.90                          24.56 
[1] "0.3 - 234.3 (23.9)" "0.0 - 220.9 (24.6)"
[1] "hr=" "1.2"
D55V2, continuous
                                vv
clus                             STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  DEL PEAK 26(12P13.1) MUTATED        14       12        0        2        62
  DEL PEAK 26(12P13.1) WILD-TYPE      75       69        8        1       291
                                vv
clus                             STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  DEL PEAK 26(12P13.1) MUTATED          47         0         25         10
  DEL PEAK 26(12P13.1) WILD-TYPE       198         2        125         19
                                vv
clus                             STAGE IIIC STAGE IV STAGE TIS STAGE X
  DEL PEAK 26(12P13.1) MUTATED            8        2         0       1
  DEL PEAK 26(12P13.1) WILD-TYPE         55       18         1      12
D55V3, multiclass
            clus
vv           DEL PEAK 26(12P13.1) MUTATED DEL PEAK 26(12P13.1) WILD-TYPE
  STAGE I                              14                             75
  STAGE IA                             12                             69
  STAGE IB                              0                              8
  STAGE II                              2                              1
  STAGE IIA                            62                            291
  STAGE IIB                            47                            198
  STAGE III                             0                              2
  STAGE IIIA                           25                            125
  STAGE IIIB                           10                             19
  STAGE IIIC                            8                             55
  STAGE IV                              2                             18
  STAGE TIS                             0                              1
  STAGE X                               1                             12
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              T1  T2  T3  T4
  DEL PEAK 26(12P13.1) MUTATED    41 112  19  11
  DEL PEAK 26(12P13.1) WILD-TYPE 231 504 111  29
D55V4, multiclass
    clus
vv   DEL PEAK 26(12P13.1) MUTATED DEL PEAK 26(12P13.1) WILD-TYPE
  T1                           41                            231
  T2                          112                            504
  T3                           19                            111
  T4                           11                             29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              N0  N1  N2  N3
  DEL PEAK 26(12P13.1) MUTATED    86  60  21  11
  DEL PEAK 26(12P13.1) WILD-TYPE 415 290  96  64
D55V5, multiclass
    clus
vv   DEL PEAK 26(12P13.1) MUTATED DEL PEAK 26(12P13.1) WILD-TYPE
  N0                           86                            415
  N1                           60                            290
  N2                           21                             96
  N3                           11                             64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D55V6, binary
                                cls
clus                               0   1
  DEL PEAK 26(12P13.1) MUTATED   160   3
  DEL PEAK 26(12P13.1) WILD-TYPE 719  18
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 26(12P13.1) MUTATED    160    3
  DEL PEAK 26(12P13.1) WILD-TYPE  719   18
   clus
vv  DEL PEAK 26(12P13.1) MUTATED DEL PEAK 26(12P13.1) WILD-TYPE
  0                          160                            719
  1                            3                             18
[1] 2 2
[1] FALSE
D55V7, binary
                                cls
clus                               0   1
  DEL PEAK 26(12P13.1) MUTATED   180   3
  DEL PEAK 26(12P13.1) WILD-TYPE 871   8
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 26(12P13.1) MUTATED    180    3
  DEL PEAK 26(12P13.1) WILD-TYPE  871    8
        clus
vv       DEL PEAK 26(12P13.1) MUTATED DEL PEAK 26(12P13.1) WILD-TYPE
  FEMALE                          180                            871
  MALE                              3                              8
[1] 2 2
[1] FALSE
                                vv
clus                             INFILTRATING CARCINOMA NOS
  DEL PEAK 26(12P13.1) MUTATED                            0
  DEL PEAK 26(12P13.1) WILD-TYPE                          1
                                vv
clus                             INFILTRATING DUCTAL CARCINOMA
  DEL PEAK 26(12P13.1) MUTATED                             154
  DEL PEAK 26(12P13.1) WILD-TYPE                           609
                                vv
clus                             INFILTRATING LOBULAR CARCINOMA
  DEL PEAK 26(12P13.1) MUTATED                               17
  DEL PEAK 26(12P13.1) WILD-TYPE                            175
                                vv
clus                             MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  DEL PEAK 26(12P13.1) MUTATED                     1                     0
  DEL PEAK 26(12P13.1) WILD-TYPE                   5                     4
                                vv
clus                             MIXED HISTOLOGY (PLEASE SPECIFY)
  DEL PEAK 26(12P13.1) MUTATED                                  3
  DEL PEAK 26(12P13.1) WILD-TYPE                               27
                                vv
clus                             MUCINOUS CARCINOMA OTHER  SPECIFY
  DEL PEAK 26(12P13.1) MUTATED                    1              6
  DEL PEAK 26(12P13.1) WILD-TYPE                 16             42
D55V8, multiclass
                                  clus
vv                                 DEL PEAK 26(12P13.1) MUTATED
  INFILTRATING CARCINOMA NOS                                  0
  INFILTRATING DUCTAL CARCINOMA                             154
  INFILTRATING LOBULAR CARCINOMA                             17
  MEDULLARY CARCINOMA                                         1
  METAPLASTIC CARCINOMA                                       0
  MIXED HISTOLOGY (PLEASE SPECIFY)                            3
  MUCINOUS CARCINOMA                                          1
  OTHER  SPECIFY                                              6
                                  clus
vv                                 DEL PEAK 26(12P13.1) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                    1
  INFILTRATING DUCTAL CARCINOMA                               609
  INFILTRATING LOBULAR CARCINOMA                              175
  MEDULLARY CARCINOMA                                           5
  METAPLASTIC CARCINOMA                                         4
  MIXED HISTOLOGY (PLEASE SPECIFY)                             27
  MUCINOUS CARCINOMA                                           16
  OTHER  SPECIFY                                               42
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D55V9, binary
                                cls
clus                               0   1
  DEL PEAK 26(12P13.1) MUTATED    55 128
  DEL PEAK 26(12P13.1) WILD-TYPE 233 646
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 26(12P13.1) MUTATED     55  128
  DEL PEAK 26(12P13.1) WILD-TYPE  233  646
     clus
vv    DEL PEAK 26(12P13.1) MUTATED DEL PEAK 26(12P13.1) WILD-TYPE
  NO                            55                            233
  YES                          128                            646
[1] 2 2
[1] FALSE
D55V10, continuous
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 26(12P13.1) MUTATED                                  0    13
  DEL PEAK 26(12P13.1) WILD-TYPE                                1    47
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 26(12P13.1) MUTATED                          28   126
  DEL PEAK 26(12P13.1) WILD-TYPE                       142   610
D55V11, multiclass
                                  clus
vv                                 DEL PEAK 26(12P13.1) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            0
  ASIAN                                                      13
  BLACK OR AFRICAN AMERICAN                                  28
  WHITE                                                     126
                                  clus
vv                                 DEL PEAK 26(12P13.1) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              1
  ASIAN                                                        47
  BLACK OR AFRICAN AMERICAN                                   142
  WHITE                                                       610
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D55V12, binary
                                cls
clus                               0   1
  DEL PEAK 26(12P13.1) MUTATED     7 147
  DEL PEAK 26(12P13.1) WILD-TYPE  31 711
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 26(12P13.1) MUTATED      7  147
  DEL PEAK 26(12P13.1) WILD-TYPE   31  711
                        clus
vv                       DEL PEAK 26(12P13.1) MUTATED
  HISPANIC OR LATINO                                7
  NOT HISPANIC OR LATINO                          147
                        clus
vv                       DEL PEAK 26(12P13.1) WILD-TYPE
  HISPANIC OR LATINO                                 31
  NOT HISPANIC OR LATINO                            711
[1] 2 2
[1] FALSE

Clustering(56) Variable = DEL PEAK 27(12Q23.1) MUTATION ANALYSIS
D56V1, survival
                                sevent
clus2                              0   1
  DEL PEAK 27(12Q23.1) MUTATED   167  26
  DEL PEAK 27(12Q23.1) WILD-TYPE 749 102
  DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE 
                           193                            851 
  DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE 
                            26                            102 
$`DEL PEAK 27(12Q23.1) MUTATED`
TCGA-3C-AAAU TCGA-A1-A0SF TCGA-A1-A0SJ TCGA-A1-A0SP TCGA-A2-A04T TCGA-A2-A04U 
      129.14        48.10        13.68        19.20        73.84        87.25 
TCGA-A2-A0CL TCGA-A2-A0D1 TCGA-A2-A0T0 TCGA-A2-A0YE TCGA-A2-A0YM TCGA-A2-A0YT 
       99.12        34.55        17.52        18.21        31.73        23.77 
TCGA-A2-A3XS TCGA-A2-A3XX TCGA-A2-A3XY TCGA-A2-A3Y0 TCGA-A2-A4RX TCGA-A2-A4S1 
       33.93        47.31        34.98        38.37        24.39        26.96 
TCGA-A2-A4S3 TCGA-A7-A0CE TCGA-A7-A13D TCGA-A7-A13E TCGA-A7-A26F TCGA-A7-A26I 
       21.90        35.31        31.73        20.19        24.26        21.73 
TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF TCGA-A7-A6VV TCGA-A7-A6VW TCGA-A7-A6VX 
       14.50        21.17        17.92        10.29         9.37        10.42 
TCGA-A8-A06Z TCGA-A8-A08B TCGA-A8-A08F TCGA-A8-A08L TCGA-A8-A08R TCGA-A8-A08X 
        1.02        38.01        33.01         9.99         0.99        43.00 
TCGA-A8-A09D TCGA-A8-A09Q TCGA-A8-A0A7 TCGA-A8-A0A9 TCGA-AC-A23E TCGA-AC-A2FO 
       50.04        25.02         0.99        27.02         2.37        50.70 
TCGA-AC-A2QJ TCGA-AC-A3W5 TCGA-AC-A7VB TCGA-AC-A8OQ TCGA-AN-A04C TCGA-AN-A0AM 
        2.27        16.57         8.22         1.12         1.78         0.16 
TCGA-AN-A0AS TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FZ TCGA-AN-A0XO 
        0.33         7.96         7.00         7.59         0.33        12.33 
TCGA-AO-A03O TCGA-AO-A0J2 TCGA-AO-A0J4 TCGA-AO-A0JB TCGA-AO-A0JL TCGA-AO-A124 
       81.63        32.78        52.18        50.70        55.33       102.58 
TCGA-AO-A129 TCGA-AO-A12F TCGA-AO-A1KQ TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A04L 
      108.03        48.36        61.87        24.79        26.93       130.09 
TCGA-AR-A0TS TCGA-AR-A0TX TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A1AI TCGA-AR-A1AJ 
       74.79        64.83        65.36       101.95        61.84        52.77 
TCGA-AR-A1AP TCGA-AR-A1AQ TCGA-AR-A1AR TCGA-AR-A24K TCGA-AR-A24S TCGA-AR-A251 
       39.98        43.07        17.23        50.89        97.84        78.48 
TCGA-AR-A252 TCGA-AR-A256 TCGA-AR-A2LL TCGA-AR-A2LN TCGA-B6-A0IG TCGA-B6-A0IH 
       73.18        93.83        66.15        38.17       146.50       112.37 
TCGA-B6-A0IJ TCGA-B6-A0RE TCGA-B6-A0RH TCGA-B6-A0RP TCGA-B6-A0RU TCGA-B6-A0WX 
      176.98       211.56       189.01       102.77       131.21        21.47 
TCGA-B6-A1KF TCGA-B6-A402 TCGA-B6-A408 TCGA-BH-A0AV TCGA-BH-A0B2 TCGA-BH-A0B7 
      101.52        74.99        68.12        59.84        40.83        56.98 
TCGA-BH-A0BL TCGA-BH-A0BP TCGA-BH-A0BR TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0C7 
       44.05        48.69        53.69        41.75        44.02        42.90 
TCGA-BH-A0DX TCGA-BH-A0E0 TCGA-BH-A0E2 TCGA-BH-A0EE TCGA-BH-A0H9 TCGA-BH-A0HY 
       47.41         4.41        14.30        31.00        41.00        50.79 
TCGA-BH-A18V TCGA-BH-A1EN TCGA-BH-A1EO TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1F6 
       51.16        69.93        91.99        12.00        55.69        97.48 
TCGA-BH-A1FN TCGA-BH-A1FU TCGA-BH-A208 TCGA-BH-A5IZ TCGA-C8-A12P TCGA-C8-A12U 
       72.07        72.07        57.83        18.64        11.77        12.66 
TCGA-C8-A12Z TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A135 TCGA-C8-A1HG TCGA-C8-A26Y 
        0.39         3.16         2.24         1.05        11.34         0.43 
TCGA-C8-A275 TCGA-C8-A27A TCGA-D8-A13Y TCGA-D8-A140 TCGA-D8-A142 TCGA-D8-A143 
        0.03        12.20        11.90        13.25        13.97        14.17 
TCGA-D8-A1X5 TCGA-D8-A1XG TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A27F TCGA-D8-A27T 
       18.58        14.73        21.83        14.50        16.04        13.08 
TCGA-D8-A27V TCGA-E2-A10C TCGA-E2-A14T TCGA-E2-A150 TCGA-E2-A159 TCGA-E2-A1AZ 
       12.53        40.11        33.30        25.41        25.05        60.53 
TCGA-E2-A1B5 TCGA-E2-A1BD TCGA-E2-A1IH TCGA-E2-A1IO TCGA-E2-A1L7 TCGA-E2-A1LH 
       32.35        17.10        33.73        20.98        27.42       106.75 
TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A1LL TCGA-E2-A2P5 TCGA-E2-A573 TCGA-E2-A574 
      102.61         8.75        43.04        16.93        34.92        26.56 
TCGA-E2-A9RU TCGA-E9-A1N9 TCGA-E9-A1NA TCGA-E9-A1ND TCGA-E9-A1RE TCGA-E9-A1RG 
       12.85        13.12        36.56        12.59        34.65        21.27 
TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A3QA TCGA-E9-A3X8 TCGA-E9-A5UP TCGA-EW-A1OY 
       12.89        23.51        30.18        15.72        14.40        29.85 
TCGA-EW-A1P4 TCGA-EW-A1P8 TCGA-EW-A1PC TCGA-EW-A1PH TCGA-EW-A3U0 TCGA-EW-A423 
       29.82         7.86         6.15        19.96        17.49        10.16 
TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2D9 TCGA-GM-A2DI TCGA-GM-A3NY TCGA-GM-A3XL 
        7.40       109.87        59.57        85.15        38.20        69.30 
TCGA-JL-A3YW TCGA-LD-A74U TCGA-LD-A7W5 TCGA-LL-A5YP TCGA-LL-A6FP TCGA-LL-A73Z 
       11.84        13.22         7.10        14.79        22.26         7.46 
TCGA-LL-A8F5 TCGA-OL-A5D7 TCGA-OL-A5RW TCGA-OL-A5S0 TCGA-OL-A66K TCGA-OL-A6VO 
       14.73        58.52        36.36        20.38        41.92        28.21 
TCGA-W8-A86G 
       11.41 

$`DEL PEAK 27(12Q23.1) WILD-TYPE`
TCGA-3C-AALI TCGA-3C-AALJ TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT0 TCGA-5L-AAT1 
      131.67        42.81        40.14        11.44        48.56        48.36 
TCGA-5T-A9QA TCGA-A1-A0SB TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SG TCGA-A1-A0SH 
        9.96         8.52        14.37        43.43        14.27        47.24 
TCGA-A1-A0SI TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SO TCGA-A1-A0SQ 
       20.88        31.79         7.96        39.32        28.01        18.21 
TCGA-A2-A04N TCGA-A2-A04P TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04V TCGA-A2-A04W 
      104.81        18.02        78.41       121.94        63.12       101.98 
TCGA-A2-A04X TCGA-A2-A04Y TCGA-A2-A0CK TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP 
       55.43        36.13       136.73        24.79       114.81        92.48 
TCGA-A2-A0CQ TCGA-A2-A0CR TCGA-A2-A0CS TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV 
       88.60       107.93        75.55        75.25         5.19        98.99 
TCGA-A2-A0CW TCGA-A2-A0CX TCGA-A2-A0D0 TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0D4 
      107.93        56.81        67.33        33.76        61.58        25.22 
TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0EQ TCGA-A2-A0ER 
      101.72       134.40        80.28       107.61        79.76        74.40 
TCGA-A2-A0ES TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX 
       72.00        35.05        34.29        31.82        61.94        24.72 
TCGA-A2-A0EY TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0SX 
       63.29        99.19        54.64        27.12        44.88        50.43 
TCGA-A2-A0SY TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T4 TCGA-A2-A0T5 
       44.28        17.13         8.38        49.84        20.52        17.46 
TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YF TCGA-A2-A0YG 
       18.90        20.75        32.55        25.28        50.47        21.90 
TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A1FV 
       21.67        49.48        18.61        19.33        48.46        23.47 
TCGA-A2-A1FW TCGA-A2-A1FX TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G1 TCGA-A2-A1G4 
       17.36        60.72        22.45        20.25        19.20        19.56 
TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25A TCGA-A2-A25B TCGA-A2-A25C TCGA-A2-A25D 
       16.47        52.47       107.70        42.44        17.19        18.15 
TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD TCGA-A2-A3XT TCGA-A2-A3XU 
      105.34        10.59        20.88        39.65        83.01        29.98 
TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XZ TCGA-A2-A4RW TCGA-A2-A4RY TCGA-A2-A4S0 
       32.75        49.48        50.37         7.30        21.30        23.21 
TCGA-A2-A4S2 TCGA-A7-A0CD TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0CJ TCGA-A7-A0D9 
       21.14        38.30        34.29        35.47        30.61        37.45 
TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A0DC TCGA-A7-A13F TCGA-A7-A13G TCGA-A7-A13H 
       35.67        33.11        29.79        25.15        23.61        29.56 
TCGA-A7-A26E TCGA-A7-A26G TCGA-A7-A26H TCGA-A7-A26J TCGA-A7-A2KD TCGA-A7-A3IY 
       31.36        23.74        23.80        20.61        22.32        11.34 
TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3J1 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A426 
       10.59        10.29        11.28        13.41        14.70        11.97 
TCGA-A7-A4SA TCGA-A7-A4SB TCGA-A7-A56D TCGA-A7-A5ZV TCGA-A7-A5ZW TCGA-A7-A5ZX 
       14.93        13.74        14.73        12.10        10.72        11.05 
TCGA-A7-A6VY TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06R TCGA-A8-A06T 
        8.75        13.02        13.02         1.02        17.98        53.06 
TCGA-A8-A06U TCGA-A8-A06X TCGA-A8-A06Y TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A079 
       29.03        31.00        26.01        17.03        53.98         9.01 
TCGA-A8-A07B TCGA-A8-A07E TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07J 
       43.00        19.99        18.97        18.97        14.01        12.00 
TCGA-A8-A07L TCGA-A8-A07O TCGA-A8-A07P TCGA-A8-A07R TCGA-A8-A07S TCGA-A8-A07U 
       32.05         9.99        10.98         8.98         7.99        24.99 
TCGA-A8-A07W TCGA-A8-A07Z TCGA-A8-A082 TCGA-A8-A084 TCGA-A8-A085 TCGA-A8-A086 
        9.99        45.07        18.05        15.06        36.95        13.02 
TCGA-A8-A08A TCGA-A8-A08C TCGA-A8-A08G TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08O 
        0.99        28.96        19.96        12.00        37.05        31.00 
TCGA-A8-A08P TCGA-A8-A08S TCGA-A8-A08T TCGA-A8-A08Z TCGA-A8-A091 TCGA-A8-A092 
       31.00        33.01       112.08        40.01        33.01        30.97 
TCGA-A8-A093 TCGA-A8-A095 TCGA-A8-A097 TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09B 
       17.95        41.98        12.00         9.99         9.99        12.00 
TCGA-A8-A09C TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K TCGA-A8-A09M TCGA-A8-A09N 
        1.02        49.05        45.07        29.98        33.07         1.02 
TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A09X TCGA-A8-A0A1 
        8.98        19.04        15.02         0.99        14.01        12.00 
TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C 
       19.04        13.02        21.04        17.03        38.04         0.95 
TCGA-AC-A23G TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FB 
       10.85         5.72         1.48        38.53        99.35        40.57 
TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2QH TCGA-AC-A2QI 
       55.43        36.99        38.79        26.04        33.04         0.92 
TCGA-AC-A3BB TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3TN TCGA-AC-A3W6 
       32.45        16.31        14.83        22.19        14.99        19.79 
TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A5XS TCGA-AC-A62V TCGA-AC-A62X TCGA-AC-A62Y 
       23.24        24.79         1.55        11.44        13.71        17.42 
TCGA-AC-A6IV TCGA-AC-A6IW TCGA-AC-A6IX TCGA-AC-A6NO TCGA-AC-A7VC TCGA-AC-A8OP 
       18.67        13.58        12.26         1.68         0.03        20.19 
TCGA-AC-A8OR TCGA-AC-A8OS TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A041 TCGA-AN-A046 
        1.32         2.30         0.33         0.33         0.23         0.33 
TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AK TCGA-AN-A0AL 
        0.62         2.96         1.71         9.96         7.36         6.51 
TCGA-AN-A0AR TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FN TCGA-AN-A0FS 
        0.33         0.33         6.44         5.65         7.17         6.28 
TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FX TCGA-AN-A0FY TCGA-AN-A0XL 
        7.04         0.33         0.36         0.33         0.33         0.33 
TCGA-AN-A0XN TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XU 
        0.33         0.30         0.33         0.33         0.33         0.33 
TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03L TCGA-AO-A03M TCGA-AO-A03N TCGA-AO-A03P 
        5.33         5.59        80.28        61.35        66.77        95.70 
TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J3 TCGA-AO-A0J5 
       68.75        47.87        58.95        29.13        21.40        26.04 
TCGA-AO-A0J6 TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JC 
       37.48        20.32        22.36        53.03        21.53        50.86 
TCGA-AO-A0JD TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JG TCGA-AO-A0JI TCGA-AO-A0JJ 
       72.00        76.77        21.37        26.24        50.24        62.04 
TCGA-AO-A0JM TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 TCGA-AO-A12A TCGA-AO-A12B 
       71.80        99.25       108.72       106.78        90.58        98.27 
TCGA-AO-A12D TCGA-AO-A12E TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP 
       64.04        57.30        41.62        28.37        14.73        82.62 
TCGA-AO-A1KR TCGA-AO-A1KS TCGA-AO-A1KT TCGA-AQ-A0Y5 TCGA-AQ-A1H2 TCGA-AQ-A1H3 
       70.39         0.53        17.79         5.65        15.62        32.52 
TCGA-AQ-A54N TCGA-AQ-A54O TCGA-AQ-A7U7 TCGA-AR-A0TP TCGA-AR-A0TQ TCGA-AR-A0TR 
        2.56        32.91        19.20       111.32        73.64         5.26 
TCGA-AR-A0TT TCGA-AR-A0TV TCGA-AR-A0TW TCGA-AR-A0TY TCGA-AR-A0TZ TCGA-AR-A0U2 
       86.66        42.35        98.93        55.86       107.24        83.87 
TCGA-AR-A0U3 TCGA-AR-A0U4 TCGA-AR-A1AH TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AM 
      114.02        85.97        75.55        51.25        48.82        76.11 
TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AS TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A1AW 
       43.73        43.56        37.81        76.21        61.28        63.62 
TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24N 
       62.14        33.73       160.90        94.22        96.89        78.51 
TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24Q TCGA-AR-A24R TCGA-AR-A24T TCGA-AR-A24U 
       84.20         2.76       104.28        87.22        76.01        53.36 
TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A254 
       85.35        50.96        83.77        79.00        89.00        72.76 
TCGA-AR-A255 TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LM 
       58.92       143.21        20.25        62.86        54.21        52.11 
TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A2LR TCGA-AR-A5QM TCGA-AR-A5QN TCGA-AR-A5QP 
       39.39        40.54        20.38        54.74        16.04        20.45 
TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0I9 TCGA-B6-A0IA 
       10.59        77.62       143.38       149.59        12.13       220.90 
TCGA-B6-A0IB TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN 
      129.57        50.70        65.72        18.77       126.12        84.59 
TCGA-B6-A0IO TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RG TCGA-B6-A0RI TCGA-B6-A0RL 
      110.14       110.93       140.88        68.45       234.28        81.17 
TCGA-B6-A0RM TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RQ TCGA-B6-A0RS TCGA-B6-A0RT 
       78.02       172.96       162.05       140.48       100.70        89.46 
TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0WY 
      157.41        97.48       188.68        79.63        18.35       113.79 
TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 
      129.57       129.70       186.48        28.27        68.94        58.88 
TCGA-B6-A1KC TCGA-B6-A1KI TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A401 TCGA-B6-A40B 
       43.59        73.51       139.17       170.17        85.35       103.63 
TCGA-B6-A40C TCGA-BH-A0AU TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0AZ TCGA-BH-A0B0 
       71.15        24.53        20.45        25.55        28.50        46.95 
TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0B6 TCGA-BH-A0B9 TCGA-BH-A0BA 
       39.55        39.16        48.36        56.94        51.68        37.22 
TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BF TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BM 
       32.02        18.21        25.71        24.85        21.70        61.68 
TCGA-BH-A0BO TCGA-BH-A0BQ TCGA-BH-A0BS TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0BW 
       35.67        27.19        53.95        45.57        49.94        11.67 
TCGA-BH-A0BZ TCGA-BH-A0C3 TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH 
       49.05        48.13        45.83        31.17        23.44        38.01 
TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DO TCGA-BH-A0DP TCGA-BH-A0DQ 
       22.13        13.91        48.23        17.26        15.65         3.22 
TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DZ TCGA-BH-A0E1 TCGA-BH-A0E6 
        2.56        38.47        67.86        16.27        15.68         9.63 
TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EA TCGA-BH-A0EB TCGA-BH-A0EI TCGA-BH-A0GY 
       44.81        46.19        32.58        24.49        24.43        30.35 
TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H7 
       10.78        15.16        37.78        35.51        24.56        23.08 
TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HO TCGA-BH-A0HP 
       52.96        26.50        20.38         5.85         2.50        13.61 
TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0RX TCGA-BH-A0W3 
       36.85        12.89        51.32        27.25         5.59        23.93 
TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A0WA TCGA-BH-A18F TCGA-BH-A18G 
       24.95        42.35        44.81        23.05         8.81         2.01 
TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18M TCGA-BH-A18N 
        7.23        20.12        90.84        26.66        72.56        37.74 
TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18R TCGA-BH-A18S TCGA-BH-A18T TCGA-BH-A18U 
       30.28        55.63        37.55        66.05         7.36        51.39 
TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EX TCGA-BH-A1EY TCGA-BH-A1F0 
      113.82        82.85        42.28        49.58        17.69        25.81 
TCGA-BH-A1F2 TCGA-BH-A1F5 TCGA-BH-A1F8 TCGA-BH-A1FB TCGA-BH-A1FC TCGA-BH-A1FD 
       31.53        89.16        24.66       120.62       114.15        33.17 
TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FM 
       74.73       122.89        36.92        63.35        55.00        45.63 
TCGA-BH-A1FR TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A203 TCGA-BH-A204 TCGA-BH-A209 
      144.59        28.14        26.14        38.60        83.31       130.16 
TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V 
       10.65         6.44        20.12        10.52       109.28         8.94 
TCGA-BH-A5J0 TCGA-BH-A6R8 TCGA-BH-A6R9 TCGA-BH-A8FY TCGA-BH-A8FZ TCGA-BH-A8G0 
       23.51         9.63         5.26         9.70        18.87        21.76 
TCGA-BH-AB28 TCGA-C8-A12L TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12Q 
        9.44        11.93        11.77        11.77        12.66        12.66 
TCGA-C8-A12V TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A137 
       12.66        12.66        12.66         1.87         1.12         4.11 
TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HI TCGA-C8-A1HJ TCGA-C8-A1HK 
        4.08        12.33        10.92        11.28         0.16        12.03 
TCGA-C8-A1HL TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A26X 
       10.42         2.30         3.25         0.30         0.23         0.36 
TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A278 TCGA-C8-A27B TCGA-C8-A3M7 
        8.28         9.67         9.53         9.50         0.99         0.03 
TCGA-C8-A3M8 TCGA-C8-A8HP TCGA-C8-A8HQ TCGA-C8-A8HR TCGA-C8-A9FZ TCGA-D8-A13Z 
        0.23        13.02        12.49        13.41        19.46        20.88 
TCGA-D8-A141 TCGA-D8-A145 TCGA-D8-A146 TCGA-D8-A147 TCGA-D8-A1J8 TCGA-D8-A1J9 
       20.58        13.48        21.14        19.20        14.17        17.49 
TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JF 
       16.50        18.71        15.78        18.15        18.90        12.03 
TCGA-D8-A1JG TCGA-D8-A1JH TCGA-D8-A1JI TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JL 
       12.03        14.01        18.97        20.09        20.12        20.09 
TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1JP TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU 
       19.40        20.38        21.01        12.20        13.32        14.70 
TCGA-D8-A1X6 TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XB 
       17.79        16.73        25.74        23.90        27.58        18.15 
TCGA-D8-A1XC TCGA-D8-A1XD TCGA-D8-A1XF TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO 
       12.39        17.16        15.22        19.92        17.69        15.55 
TCGA-D8-A1XQ TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1XV 
       16.41        15.85        16.31         6.35        12.99        15.16 
TCGA-D8-A1XW TCGA-D8-A1XY TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 
       12.66        16.54        15.32        15.52         9.93        14.24 
TCGA-D8-A1Y3 TCGA-D8-A27E TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27I TCGA-D8-A27K 
       14.14        17.42        13.45        13.05        14.43         9.44 
TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27R TCGA-D8-A27W 
       16.41        13.48         4.80         0.76        10.09        12.26 
TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-D8-A73U TCGA-D8-A73W TCGA-D8-A73X 
       33.37        18.51        21.67        16.18         8.02        12.10 
TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10B 
       43.00        34.42        27.52        46.59        40.41        37.51 
TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14Q 
       28.44        28.87        47.15        44.68        40.96        38.24 
TCGA-E2-A14R TCGA-E2-A14S TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14W TCGA-E2-A14X 
       38.60        33.17        43.33        34.26        32.02        31.96 
TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A152 TCGA-E2-A153 TCGA-E2-A154 TCGA-E2-A155 
       28.60        18.51        27.12        23.24        19.43        21.04 
TCGA-E2-A156 TCGA-E2-A158 TCGA-E2-A15A TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15E 
       23.87        14.79        23.34        22.82        17.29        20.71 
TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K 
       21.63        18.21        12.92        17.42        19.40         9.04 
TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15O TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A15S 
       20.58        11.05        13.02        19.56        17.06        14.07 
TCGA-E2-A15T TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B6 TCGA-E2-A1BC 
       14.99        53.62        53.03        33.01        28.50        16.47 
TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IK 
       38.30        37.41        32.78        33.70        28.44        22.65 
TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L8 TCGA-E2-A1L9 
        3.88        22.19        11.08        54.18        39.62        19.66 
TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LG TCGA-E2-A2P6 TCGA-E2-A3DX 
       24.59        40.47        28.90        18.87         5.52        15.72 
TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A576 TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 
        8.28        30.61        34.29        34.82        32.88        36.82 
TCGA-E9-A1N6 TCGA-E9-A1N8 TCGA-E9-A1NC TCGA-E9-A1NE TCGA-E9-A1NF TCGA-E9-A1NG 
       13.48        12.00        39.55        35.77        35.24        25.84 
TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R4 
        9.86        11.90        28.27        34.95         2.56         6.12 
TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RC 
        3.02         2.76        21.21        32.09        32.09        40.24 
TCGA-E9-A1RD TCGA-E9-A1RF TCGA-E9-A1RH TCGA-E9-A1RI TCGA-E9-A226 TCGA-E9-A227 
        1.12         6.58        34.59        35.64        34.13        32.05 
TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A22D TCGA-E9-A22H 
       12.53        13.32        39.09        22.75        41.03        20.71 
TCGA-E9-A243 TCGA-E9-A244 TCGA-E9-A247 TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A 
       17.06         0.69        27.22         1.94         7.13        24.56 
TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A54X 
        0.72        29.72         0.76        26.07        18.41        12.33 
TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UO TCGA-E9-A6HE TCGA-EW-A1IW 
       23.84        14.70         0.79        13.81        15.39        12.20 
TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1J3 
       39.72         8.48        18.21        18.90        13.25        16.57 
TCGA-EW-A1J5 TCGA-EW-A1J6 TCGA-EW-A1OV TCGA-EW-A1OW TCGA-EW-A1OX TCGA-EW-A1OZ 
       15.68        28.77        25.94        22.82        29.95        40.41 
TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P3 TCGA-EW-A1P5 TCGA-EW-A1P6 TCGA-EW-A1P7 
       41.13        39.78        52.96        23.11        18.48        30.08 
TCGA-EW-A1PA TCGA-EW-A1PB TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PF TCGA-EW-A1PG 
       18.90        19.99        13.94        10.52        14.43        34.55 
TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A424 
       55.00        52.73        25.91        22.09        34.03        23.51 
TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DC TCGA-GM-A2DD TCGA-GM-A2DF TCGA-GM-A2DH 
      216.76        79.10        83.34        75.02        70.85        72.10 
TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A2DO TCGA-GM-A3NW 
       86.96       115.69       106.06       101.62        85.35       110.50 
TCGA-GM-A3XG TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2NL 
       43.73        66.38        72.03        13.55        18.12         2.60 
TCGA-HN-A2OB TCGA-JL-A3YX TCGA-LD-A66U TCGA-LD-A7W6 TCGA-LD-A9QF TCGA-LL-A440 
       62.43        11.57        21.24        13.28        10.62        24.95 
TCGA-LL-A441 TCGA-LL-A442 TCGA-LL-A50Y TCGA-LL-A5YL TCGA-LL-A5YM TCGA-LL-A5YN 
       11.44        10.95        25.05        17.06        15.32        14.70 
TCGA-LL-A5YO TCGA-LL-A6FQ TCGA-LL-A6FR TCGA-LL-A73Y TCGA-LL-A740 TCGA-LL-A7SZ 
       14.47         2.63        16.08        15.68        14.50        14.70 
TCGA-LL-A7T0 TCGA-LL-A9Q3 TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D6 
       12.36        14.07        27.91        22.39         2.10        36.30 
TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RU TCGA-OL-A5RV TCGA-OL-A5RX TCGA-OL-A5RY 
       31.99        58.62        40.08        34.92        28.87        24.72 
TCGA-OL-A5RZ TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66L TCGA-OL-A66N 
       22.32        26.70        23.47        65.62        42.77        26.04 
TCGA-OL-A66O TCGA-OL-A66P TCGA-OL-A6VQ TCGA-OL-A6VR TCGA-OL-A97C TCGA-PE-A5DC 
       17.36        14.07        19.73        40.11         8.91        47.01 
TCGA-PE-A5DD TCGA-PE-A5DE TCGA-PL-A8LX TCGA-PL-A8LY TCGA-PL-A8LZ TCGA-S3-A6ZF 
       64.21        86.96         0.16         0.26         9.93        16.50 
TCGA-S3-A6ZG TCGA-S3-A6ZH TCGA-S3-AA0Z TCGA-S3-AA10 TCGA-S3-AA11 TCGA-S3-AA12 
       13.12        16.93        16.80        15.39        13.84        15.35 
TCGA-S3-AA14 TCGA-S3-AA15 TCGA-S3-AA17 TCGA-UL-AAZ6 TCGA-UU-A93S TCGA-WT-AB41 
       14.96        13.84        13.94        17.03         3.81        52.96 
TCGA-WT-AB44 TCGA-XX-A899 TCGA-XX-A89A TCGA-Z7-A8R5 TCGA-Z7-A8R6 
       29.03        15.35        16.04       108.07       107.05 

  DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE 
                          0.03                           0.03 
  DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE 
                        211.56                         234.28 
  DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE 
                         28.21                          23.61 
[1] "0.0 - 211.6 (28.2)" "0.0 - 234.3 (23.6)"
[1] "hr=" "1"  
D56V2, continuous
                                vv
clus                             STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  DEL PEAK 27(12Q23.1) MUTATED        17        8        0        0        71
  DEL PEAK 27(12Q23.1) WILD-TYPE      72       73        8        3       282
                                vv
clus                             STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  DEL PEAK 27(12Q23.1) MUTATED          49         0         26          8
  DEL PEAK 27(12Q23.1) WILD-TYPE       196         2        124         21
                                vv
clus                             STAGE IIIC STAGE IV STAGE TIS STAGE X
  DEL PEAK 27(12Q23.1) MUTATED           13        2         0       2
  DEL PEAK 27(12Q23.1) WILD-TYPE         50       18         1      11
D56V3, multiclass
            clus
vv           DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE
  STAGE I                              17                             72
  STAGE IA                              8                             73
  STAGE IB                              0                              8
  STAGE II                              0                              3
  STAGE IIA                            71                            282
  STAGE IIB                            49                            196
  STAGE III                             0                              2
  STAGE IIIA                           26                            124
  STAGE IIIB                            8                             21
  STAGE IIIC                           13                             50
  STAGE IV                              2                             18
  STAGE TIS                             0                              1
  STAGE X                               2                             11
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              T1  T2  T3  T4
  DEL PEAK 27(12Q23.1) MUTATED    36 127  22  10
  DEL PEAK 27(12Q23.1) WILD-TYPE 236 489 108  30
D56V4, multiclass
    clus
vv   DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE
  T1                           36                            236
  T2                          127                            489
  T3                           22                            108
  T4                           10                             30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              N0  N1  N2  N3
  DEL PEAK 27(12Q23.1) MUTATED    97  60  23  13
  DEL PEAK 27(12Q23.1) WILD-TYPE 404 290  94  62
D56V5, multiclass
    clus
vv   DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE
  N0                           97                            404
  N1                           60                            290
  N2                           23                             94
  N3                           13                             62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D56V6, binary
                                cls
clus                               0   1
  DEL PEAK 27(12Q23.1) MUTATED   166   2
  DEL PEAK 27(12Q23.1) WILD-TYPE 713  19
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 27(12Q23.1) MUTATED    166    2
  DEL PEAK 27(12Q23.1) WILD-TYPE  713   19
   clus
vv  DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE
  0                          166                            713
  1                            2                             19
[1] 2 2
[1] FALSE
D56V7, binary
                                cls
clus                               0   1
  DEL PEAK 27(12Q23.1) MUTATED   196   1
  DEL PEAK 27(12Q23.1) WILD-TYPE 855  10
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 27(12Q23.1) MUTATED    196    1
  DEL PEAK 27(12Q23.1) WILD-TYPE  855   10
        clus
vv       DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE
  FEMALE                          196                            855
  MALE                              1                             10
[1] 2 2
[1] FALSE
                                vv
clus                             INFILTRATING CARCINOMA NOS
  DEL PEAK 27(12Q23.1) MUTATED                            0
  DEL PEAK 27(12Q23.1) WILD-TYPE                          1
                                vv
clus                             INFILTRATING DUCTAL CARCINOMA
  DEL PEAK 27(12Q23.1) MUTATED                             159
  DEL PEAK 27(12Q23.1) WILD-TYPE                           604
                                vv
clus                             INFILTRATING LOBULAR CARCINOMA
  DEL PEAK 27(12Q23.1) MUTATED                               21
  DEL PEAK 27(12Q23.1) WILD-TYPE                            171
                                vv
clus                             MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  DEL PEAK 27(12Q23.1) MUTATED                     3                     0
  DEL PEAK 27(12Q23.1) WILD-TYPE                   3                     4
                                vv
clus                             MIXED HISTOLOGY (PLEASE SPECIFY)
  DEL PEAK 27(12Q23.1) MUTATED                                  4
  DEL PEAK 27(12Q23.1) WILD-TYPE                               26
                                vv
clus                             MUCINOUS CARCINOMA OTHER  SPECIFY
  DEL PEAK 27(12Q23.1) MUTATED                    0             10
  DEL PEAK 27(12Q23.1) WILD-TYPE                 17             38
D56V8, multiclass
                                  clus
vv                                 DEL PEAK 27(12Q23.1) MUTATED
  INFILTRATING CARCINOMA NOS                                  0
  INFILTRATING DUCTAL CARCINOMA                             159
  INFILTRATING LOBULAR CARCINOMA                             21
  MEDULLARY CARCINOMA                                         3
  METAPLASTIC CARCINOMA                                       0
  MIXED HISTOLOGY (PLEASE SPECIFY)                            4
  MUCINOUS CARCINOMA                                          0
  OTHER  SPECIFY                                             10
                                  clus
vv                                 DEL PEAK 27(12Q23.1) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                    1
  INFILTRATING DUCTAL CARCINOMA                               604
  INFILTRATING LOBULAR CARCINOMA                              171
  MEDULLARY CARCINOMA                                           3
  METAPLASTIC CARCINOMA                                         4
  MIXED HISTOLOGY (PLEASE SPECIFY)                             26
  MUCINOUS CARCINOMA                                           17
  OTHER  SPECIFY                                               38
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D56V9, binary
                                cls
clus                               0   1
  DEL PEAK 27(12Q23.1) MUTATED    54 143
  DEL PEAK 27(12Q23.1) WILD-TYPE 234 631
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 27(12Q23.1) MUTATED     54  143
  DEL PEAK 27(12Q23.1) WILD-TYPE  234  631
     clus
vv    DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE
  NO                            54                            234
  YES                          143                            631
[1] 2 2
[1] FALSE
D56V10, continuous
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 27(12Q23.1) MUTATED                                  0    13
  DEL PEAK 27(12Q23.1) WILD-TYPE                                1    47
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 27(12Q23.1) MUTATED                          47   123
  DEL PEAK 27(12Q23.1) WILD-TYPE                       123   613
D56V11, multiclass
                                  clus
vv                                 DEL PEAK 27(12Q23.1) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            0
  ASIAN                                                      13
  BLACK OR AFRICAN AMERICAN                                  47
  WHITE                                                     123
                                  clus
vv                                 DEL PEAK 27(12Q23.1) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              1
  ASIAN                                                        47
  BLACK OR AFRICAN AMERICAN                                   123
  WHITE                                                       613
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D56V12, binary
                                cls
clus                               0   1
  DEL PEAK 27(12Q23.1) MUTATED     6 166
  DEL PEAK 27(12Q23.1) WILD-TYPE  32 692
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 27(12Q23.1) MUTATED      6  166
  DEL PEAK 27(12Q23.1) WILD-TYPE   32  692
                        clus
vv                       DEL PEAK 27(12Q23.1) MUTATED
  HISPANIC OR LATINO                                6
  NOT HISPANIC OR LATINO                          166
                        clus
vv                       DEL PEAK 27(12Q23.1) WILD-TYPE
  HISPANIC OR LATINO                                 32
  NOT HISPANIC OR LATINO                            692
[1] 2 2
[1] FALSE

Clustering(57) Variable = DEL PEAK 28(12Q24.31) MUTATION ANALYSIS
D57V1, survival
                                 sevent
clus2                               0   1
  DEL PEAK 28(12Q24.31) MUTATED   172  29
  DEL PEAK 28(12Q24.31) WILD-TYPE 744  99
  DEL PEAK 28(12Q24.31) MUTATED DEL PEAK 28(12Q24.31) WILD-TYPE 
                            201                             843 
  DEL PEAK 28(12Q24.31) MUTATED DEL PEAK 28(12Q24.31) WILD-TYPE 
                             29                              99 
$`DEL PEAK 28(12Q24.31) MUTATED`
TCGA-3C-AAAU TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SJ TCGA-A1-A0SP TCGA-A2-A04P 
      129.14        43.43        48.10        13.68        19.20        18.02 
TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A0CO TCGA-A2-A0D1 TCGA-A2-A0ES TCGA-A2-A0EY 
       73.84        87.25       114.81        34.55        72.00        63.29 
TCGA-A2-A0SV TCGA-A2-A0T0 TCGA-A2-A0YE TCGA-A2-A0YT TCGA-A2-A3XS TCGA-A2-A3XX 
       27.12        17.52        18.21        23.77        33.93        47.31 
TCGA-A2-A3XY TCGA-A2-A3Y0 TCGA-A2-A4RX TCGA-A2-A4S1 TCGA-A7-A0CE TCGA-A7-A0CG 
       34.98        38.37        24.39        26.96        35.31        34.29 
TCGA-A7-A13D TCGA-A7-A13E TCGA-A7-A13H TCGA-A7-A26F TCGA-A7-A26I TCGA-A7-A4SA 
       31.73        20.19        29.56        24.26        21.73        14.93 
TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF TCGA-A7-A6VV TCGA-A7-A6VW TCGA-A7-A6VX 
       14.50        21.17        17.92        10.29         9.37        10.42 
TCGA-A8-A06Z TCGA-A8-A07R TCGA-A8-A08B TCGA-A8-A08L TCGA-A8-A08R TCGA-A8-A08X 
        1.02         8.98        38.01         9.99         0.99        43.00 
TCGA-A8-A09D TCGA-A8-A09Q TCGA-A8-A09X TCGA-A8-A0A7 TCGA-A8-A0A9 TCGA-AC-A23E 
       50.04        25.02        14.01         0.99        27.02         2.37 
TCGA-AC-A2FO TCGA-AC-A2QJ TCGA-AC-A3W5 TCGA-AC-A3W6 TCGA-AC-A7VB TCGA-AC-A8OQ 
       50.70         2.27        16.57        19.79         8.22         1.12 
TCGA-AN-A04C TCGA-AN-A0AJ TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FJ TCGA-AN-A0FK 
        1.78         9.96         0.33         0.33         7.96         7.00 
TCGA-AN-A0FL TCGA-AN-A0FT TCGA-AN-A0FZ TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XU 
        7.59         7.04         0.33         0.33        12.33         0.33 
TCGA-AO-A03O TCGA-AO-A0J2 TCGA-AO-A0J4 TCGA-AO-A0JB TCGA-AO-A0JD TCGA-AO-A0JL 
       81.63        32.78        52.18        50.70        72.00        55.33 
TCGA-AO-A124 TCGA-AO-A129 TCGA-AO-A12F TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AR-A0TX 
      102.58       108.03        48.36        26.93       130.09        64.83 
TCGA-AR-A0U0 TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AQ TCGA-AR-A1AR TCGA-AR-A24K 
       65.36        61.84        52.77        43.07        17.23        50.89 
TCGA-AR-A24Q TCGA-AR-A24S TCGA-AR-A251 TCGA-AR-A252 TCGA-AR-A2LL TCGA-AR-A2LN 
      104.28        97.84        78.48        73.18        66.15        38.17 
TCGA-B6-A0IH TCGA-B6-A0RE TCGA-B6-A0RP TCGA-B6-A0RU TCGA-B6-A0RV TCGA-B6-A0WX 
      112.37       211.56       102.77       131.21       157.41        21.47 
TCGA-B6-A1KF TCGA-B6-A402 TCGA-B6-A408 TCGA-BH-A0AV TCGA-BH-A0B0 TCGA-BH-A0B2 
      101.52        74.99        68.12        59.84        46.95        40.83 
TCGA-BH-A0B7 TCGA-BH-A0BL TCGA-BH-A0BP TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0C7 
       56.98        44.05        48.69        41.75        44.02        42.90 
TCGA-BH-A0DX TCGA-BH-A0E0 TCGA-BH-A0E2 TCGA-BH-A0EE TCGA-BH-A0H9 TCGA-BH-A0HY 
       47.41         4.41        14.30        31.00        41.00        50.79 
TCGA-BH-A18V TCGA-BH-A1EN TCGA-BH-A1EO TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1EY 
       51.16        69.93        91.99        12.00        55.69        17.69 
TCGA-BH-A1F6 TCGA-BH-A1FN TCGA-BH-A1FU TCGA-BH-A202 TCGA-BH-A208 TCGA-BH-A5IZ 
       97.48        72.07        72.07        26.14        57.83        18.64 
TCGA-BH-A5J0 TCGA-BH-A8FZ TCGA-C8-A12U TCGA-C8-A12Z TCGA-C8-A131 TCGA-C8-A132 
       23.51        18.87        12.66         0.39         2.24         1.87 
TCGA-C8-A135 TCGA-C8-A1HG TCGA-C8-A26Y TCGA-C8-A278 TCGA-C8-A27A TCGA-D8-A13Y 
        1.05        11.34         0.43         9.50        12.20        11.90 
TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A1JD TCGA-D8-A1JK TCGA-D8-A1JM TCGA-D8-A1XJ 
       13.97        14.17        18.15        20.12        19.40        21.83 
TCGA-D8-A1XK TCGA-D8-A1XO TCGA-D8-A1XQ TCGA-D8-A27M TCGA-D8-A27T TCGA-D8-A27V 
       14.50        15.55        16.41        13.48        13.08        12.53 
TCGA-E2-A10C TCGA-E2-A14R TCGA-E2-A14T TCGA-E2-A150 TCGA-E2-A154 TCGA-E2-A159 
       40.11        38.60        33.30        25.41        19.43        25.05 
TCGA-E2-A15E TCGA-E2-A1AZ TCGA-E2-A1BD TCGA-E2-A1IO TCGA-E2-A1L7 TCGA-E2-A1LG 
       20.71        60.53        17.10        20.98        27.42        18.87 
TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A2P5 TCGA-E2-A573 TCGA-E2-A574 
      106.75       102.61         8.75        16.93        34.92        26.56 
TCGA-E2-A9RU TCGA-E9-A1N9 TCGA-E9-A1R2 TCGA-E9-A1RG TCGA-E9-A22E TCGA-E9-A244 
       12.85        13.12        34.95        21.27        12.89         0.69 
TCGA-E9-A3QA TCGA-E9-A3X8 TCGA-E9-A5UP TCGA-EW-A1OY TCGA-EW-A1P4 TCGA-EW-A1P8 
       30.18        15.72        14.40        29.85        29.82         7.86 
TCGA-EW-A1PH TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2DI TCGA-GM-A3NY TCGA-GM-A3XL 
       19.96         7.40       109.87        85.15        38.20        69.30 
TCGA-HN-A2OB TCGA-JL-A3YW TCGA-LD-A66U TCGA-LD-A74U TCGA-LD-A7W5 TCGA-LL-A5YP 
       62.43        11.84        21.24        13.22         7.10        14.79 
TCGA-LL-A73Z TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66K TCGA-OL-A6VO TCGA-S3-AA10 
        7.46        22.32        20.38        41.92        28.21        15.39 
TCGA-S3-AA17 TCGA-UU-A93S TCGA-W8-A86G 
       13.94         3.81        11.41 

$`DEL PEAK 28(12Q24.31) WILD-TYPE`
TCGA-3C-AALI TCGA-3C-AALJ TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT0 TCGA-5L-AAT1 
      131.67        42.81        40.14        11.44        48.56        48.36 
TCGA-5T-A9QA TCGA-A1-A0SB TCGA-A1-A0SD TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI 
        9.96         8.52        14.37        14.27        47.24        20.88 
TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SO TCGA-A1-A0SQ TCGA-A2-A04N 
       31.79         7.96        39.32        28.01        18.21       104.81 
TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04V TCGA-A2-A04W TCGA-A2-A04X TCGA-A2-A04Y 
       78.41       121.94        63.12       101.98        55.43        36.13 
TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CP TCGA-A2-A0CQ TCGA-A2-A0CR 
      136.73        99.12        24.79        92.48        88.60       107.93 
TCGA-A2-A0CS TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0CX 
       75.55        75.25         5.19        98.99       107.93        56.81 
TCGA-A2-A0D0 TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0D4 TCGA-A2-A0EM TCGA-A2-A0EN 
       67.33        33.76        61.58        25.22       101.72       134.40 
TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0EQ TCGA-A2-A0ER TCGA-A2-A0ET TCGA-A2-A0EU 
       80.28       107.61        79.76        74.40        35.05        34.29 
TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SW 
       31.82        61.94        24.72        99.19        54.64        44.88 
TCGA-A2-A0SX TCGA-A2-A0SY TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T4 
       50.43        44.28        17.13         8.38        49.84        20.52 
TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YF 
       17.46        18.90        20.75        32.55        25.28        50.47 
TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A0YK TCGA-A2-A0YL 
       21.90        21.67        49.48        18.61        19.33        48.46 
TCGA-A2-A0YM TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1FX TCGA-A2-A1FZ TCGA-A2-A1G0 
       31.73        23.47        17.36        60.72        22.45        20.25 
TCGA-A2-A1G1 TCGA-A2-A1G4 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25A TCGA-A2-A25B 
       19.20        19.56        16.47        52.47       107.70        42.44 
TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD 
       17.19        18.15       105.34        10.59        20.88        39.65 
TCGA-A2-A3XT TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XZ TCGA-A2-A4RW 
       83.01        29.98        32.75        49.48        50.37         7.30 
TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CD TCGA-A7-A0CH 
       21.30        23.21        21.14        21.90        38.30        35.47 
TCGA-A7-A0CJ TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A0DC TCGA-A7-A13F 
       30.61        37.45        35.67        33.11        29.79        25.15 
TCGA-A7-A13G TCGA-A7-A26E TCGA-A7-A26G TCGA-A7-A26H TCGA-A7-A26J TCGA-A7-A2KD 
       23.61        31.36        23.74        23.80        20.61        22.32 
TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3J1 TCGA-A7-A3RF TCGA-A7-A425 
       11.34        10.59        10.29        11.28        13.41        14.70 
TCGA-A7-A426 TCGA-A7-A4SB TCGA-A7-A56D TCGA-A7-A5ZV TCGA-A7-A5ZW TCGA-A7-A5ZX 
       11.97        13.74        14.73        12.10        10.72        11.05 
TCGA-A7-A6VY TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06R TCGA-A8-A06T 
        8.75        13.02        13.02         1.02        17.98        53.06 
TCGA-A8-A06U TCGA-A8-A06X TCGA-A8-A06Y TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A079 
       29.03        31.00        26.01        17.03        53.98         9.01 
TCGA-A8-A07B TCGA-A8-A07E TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07J 
       43.00        19.99        18.97        18.97        14.01        12.00 
TCGA-A8-A07L TCGA-A8-A07O TCGA-A8-A07P TCGA-A8-A07S TCGA-A8-A07U TCGA-A8-A07W 
       32.05         9.99        10.98         7.99        24.99         9.99 
TCGA-A8-A07Z TCGA-A8-A082 TCGA-A8-A084 TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A 
       45.07        18.05        15.06        36.95        13.02         0.99 
TCGA-A8-A08C TCGA-A8-A08F TCGA-A8-A08G TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08O 
       28.96        33.01        19.96        12.00        37.05        31.00 
TCGA-A8-A08P TCGA-A8-A08S TCGA-A8-A08T TCGA-A8-A08Z TCGA-A8-A091 TCGA-A8-A092 
       31.00        33.01       112.08        40.01        33.01        30.97 
TCGA-A8-A093 TCGA-A8-A095 TCGA-A8-A097 TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09B 
       17.95        41.98        12.00         9.99         9.99        12.00 
TCGA-A8-A09C TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K TCGA-A8-A09M TCGA-A8-A09N 
        1.02        49.05        45.07        29.98        33.07         1.02 
TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A0A1 TCGA-A8-A0A2 
        8.98        19.04        15.02         0.99        12.00        19.04 
TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23G 
       13.02        21.04        17.03        38.04         0.95        10.85 
TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FF 
        5.72         1.48        38.53        99.35        40.57        55.43 
TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2QH TCGA-AC-A2QI TCGA-AC-A3BB 
       36.99        38.79        26.04        33.04         0.92        32.45 
TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3TN TCGA-AC-A3YI TCGA-AC-A3YJ 
       16.31        14.83        22.19        14.99        23.24        24.79 
TCGA-AC-A5XS TCGA-AC-A62V TCGA-AC-A62X TCGA-AC-A62Y TCGA-AC-A6IV TCGA-AC-A6IW 
        1.55        11.44        13.71        17.42        18.67        13.58 
TCGA-AC-A6IX TCGA-AC-A6NO TCGA-AC-A7VC TCGA-AC-A8OP TCGA-AC-A8OR TCGA-AC-A8OS 
       12.26         1.68         0.03        20.19         1.32         2.30 
TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A041 TCGA-AN-A046 TCGA-AN-A049 TCGA-AN-A04A 
        0.33         0.33         0.23         0.33         0.62         2.96 
TCGA-AN-A04D TCGA-AN-A0AK TCGA-AN-A0AL TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0FD 
        1.71         7.36         6.51         0.16         0.33         6.44 
TCGA-AN-A0FF TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FX 
        5.65         7.17         6.28         0.33         0.36         0.33 
TCGA-AN-A0FY TCGA-AN-A0XL TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS TCGA-AN-A0XT 
        0.33         0.33         0.30         0.33         0.33         0.33 
TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03L TCGA-AO-A03M TCGA-AO-A03N TCGA-AO-A03P 
        5.33         5.59        80.28        61.35        66.77        95.70 
TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J3 TCGA-AO-A0J5 
       68.75        47.87        58.95        29.13        21.40        26.04 
TCGA-AO-A0J6 TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JC 
       37.48        20.32        22.36        53.03        21.53        50.86 
TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JG TCGA-AO-A0JI TCGA-AO-A0JJ TCGA-AO-A0JM 
       76.77        21.37        26.24        50.24        62.04        71.80 
TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12D 
       99.25       108.72       106.78        90.58        98.27        64.04 
TCGA-AO-A12E TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KQ 
       57.30        41.62        28.37        14.73        82.62        61.87 
TCGA-AO-A1KR TCGA-AO-A1KS TCGA-AO-A1KT TCGA-AQ-A04H TCGA-AQ-A0Y5 TCGA-AQ-A1H2 
       70.39         0.53        17.79        24.79         5.65        15.62 
TCGA-AQ-A1H3 TCGA-AQ-A54N TCGA-AQ-A54O TCGA-AQ-A7U7 TCGA-AR-A0TP TCGA-AR-A0TQ 
       32.52         2.56        32.91        19.20       111.32        73.64 
TCGA-AR-A0TR TCGA-AR-A0TS TCGA-AR-A0TT TCGA-AR-A0TV TCGA-AR-A0TW TCGA-AR-A0TY 
        5.26        74.79        86.66        42.35        98.93        55.86 
TCGA-AR-A0TZ TCGA-AR-A0U1 TCGA-AR-A0U2 TCGA-AR-A0U3 TCGA-AR-A0U4 TCGA-AR-A1AH 
      107.24       101.95        83.87       114.02        85.97        75.55 
TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AM TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AP 
       51.25        48.82        76.11        43.73        43.56        39.98 
TCGA-AR-A1AS TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A1AY 
       37.81        76.21        61.28        63.62        62.14        33.73 
TCGA-AR-A24H TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P 
      160.90        94.22        96.89        78.51        84.20         2.76 
TCGA-AR-A24R TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A24X 
       87.22        76.01        53.36        85.35        50.96        83.77 
TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A254 TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LE 
       79.00        89.00        72.76        58.92        93.83       143.21 
TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LM TCGA-AR-A2LO TCGA-AR-A2LQ 
       20.25        62.86        54.21        52.11        39.39        40.54 
TCGA-AR-A2LR TCGA-AR-A5QM TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 
       20.38        54.74        16.04        20.45        10.59        77.62 
TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0I9 TCGA-B6-A0IA TCGA-B6-A0IB TCGA-B6-A0IC 
      143.38       149.59        12.13       220.90       129.57        50.70 
TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN 
       65.72       146.50       176.98        18.77       126.12        84.59 
TCGA-B6-A0IO TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RI 
      110.14       110.93       140.88        68.45       189.01       234.28 
TCGA-B6-A0RL TCGA-B6-A0RM TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RQ TCGA-B6-A0RS 
       81.17        78.02       172.96       162.05       140.48       100.70 
TCGA-B6-A0RT TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0WY 
       89.46        97.48       188.68        79.63        18.35       113.79 
TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 
      129.57       129.70       186.48        28.27        68.94        58.88 
TCGA-B6-A1KC TCGA-B6-A1KI TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A401 TCGA-B6-A40B 
       43.59        73.51       139.17       170.17        85.35       103.63 
TCGA-B6-A40C TCGA-BH-A0AU TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0AZ TCGA-BH-A0B3 
       71.15        24.53        20.45        25.55        28.50        39.55 
TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0B6 TCGA-BH-A0B9 TCGA-BH-A0BA TCGA-BH-A0BC 
       39.16        48.36        56.94        51.68        37.22        32.02 
TCGA-BH-A0BD TCGA-BH-A0BF TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BM TCGA-BH-A0BO 
       18.21        25.71        24.85        21.70        61.68        35.67 
TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0BW 
       27.19        53.69        53.95        45.57        49.94        11.67 
TCGA-BH-A0BZ TCGA-BH-A0C3 TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH 
       49.05        48.13        45.83        31.17        23.44        38.01 
TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DO TCGA-BH-A0DP TCGA-BH-A0DQ 
       22.13        13.91        48.23        17.26        15.65         3.22 
TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DZ TCGA-BH-A0E1 TCGA-BH-A0E6 
        2.56        38.47        67.86        16.27        15.68         9.63 
TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EA TCGA-BH-A0EB TCGA-BH-A0EI TCGA-BH-A0GY 
       44.81        46.19        32.58        24.49        24.43        30.35 
TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H7 
       10.78        15.16        37.78        35.51        24.56        23.08 
TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HO TCGA-BH-A0HP 
       52.96        26.50        20.38         5.85         2.50        13.61 
TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0RX TCGA-BH-A0W3 
       36.85        12.89        51.32        27.25         5.59        23.93 
TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A0WA TCGA-BH-A18F TCGA-BH-A18G 
       24.95        42.35        44.81        23.05         8.81         2.01 
TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18M TCGA-BH-A18N 
        7.23        20.12        90.84        26.66        72.56        37.74 
TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18R TCGA-BH-A18S TCGA-BH-A18T TCGA-BH-A18U 
       30.28        55.63        37.55        66.05         7.36        51.39 
TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EX TCGA-BH-A1F0 TCGA-BH-A1F2 
      113.82        82.85        42.28        49.58        25.81        31.53 
TCGA-BH-A1F5 TCGA-BH-A1F8 TCGA-BH-A1FB TCGA-BH-A1FC TCGA-BH-A1FD TCGA-BH-A1FE 
       89.16        24.66       120.62       114.15        33.17        74.73 
TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FM TCGA-BH-A1FR 
      122.89        36.92        63.35        55.00        45.63       144.59 
TCGA-BH-A201 TCGA-BH-A203 TCGA-BH-A204 TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A28Q 
       28.14        38.60        83.31       130.16        10.65         6.44 
TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A6R8 TCGA-BH-A6R9 
       20.12        10.52       109.28         8.94         9.63         5.26 
TCGA-BH-A8FY TCGA-BH-A8G0 TCGA-BH-AB28 TCGA-C8-A12L TCGA-C8-A12M TCGA-C8-A12N 
        9.70        21.76         9.44        11.93        11.77        11.77 
TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12V TCGA-C8-A12W TCGA-C8-A12X 
       12.66        11.77        12.66        12.66        12.66        12.66 
TCGA-C8-A130 TCGA-C8-A134 TCGA-C8-A137 TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HF 
        3.16         1.12         4.11         4.08        12.33        10.92 
TCGA-C8-A1HI TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HL TCGA-C8-A1HM TCGA-C8-A1HN 
       11.28         0.16        12.03        10.42         2.30         3.25 
TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A26X TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A274 
        0.30         0.23         0.36         8.28         9.67         9.53 
TCGA-C8-A275 TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-C8-A8HP TCGA-C8-A8HQ 
        0.03         0.99         0.03         0.23        13.02        12.49 
TCGA-C8-A8HR TCGA-C8-A9FZ TCGA-D8-A13Z TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A145 
       13.41        19.46        20.88        13.25        20.58        13.48 
TCGA-D8-A146 TCGA-D8-A147 TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JB 
       21.14        19.20        14.17        17.49        16.50        18.71 
TCGA-D8-A1JC TCGA-D8-A1JE TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JH TCGA-D8-A1JI 
       15.78        18.90        12.03        12.03        14.01        18.97 
TCGA-D8-A1JJ TCGA-D8-A1JL TCGA-D8-A1JN TCGA-D8-A1JP TCGA-D8-A1JS TCGA-D8-A1JT 
       20.09        20.09        20.38        21.01        12.20        13.32 
TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1X9 
       14.70        18.58        17.79        16.73        25.74        23.90 
TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XD TCGA-D8-A1XF TCGA-D8-A1XG 
       27.58        18.15        12.39        17.16        15.22        14.73 
TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XT TCGA-D8-A1XU 
       19.92        17.69        15.85        16.31         6.35        12.99 
TCGA-D8-A1XV TCGA-D8-A1XW TCGA-D8-A1XY TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A1Y1 
       15.16        12.66        16.54        15.32        15.52         9.93 
TCGA-D8-A1Y2 TCGA-D8-A1Y3 TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27G TCGA-D8-A27H 
       14.24        14.14        17.42        16.04        13.45        13.05 
TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27R 
       14.43         9.44        16.41         4.80         0.76        10.09 
TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-D8-A73U TCGA-D8-A73W 
       12.26        33.37        18.51        21.67        16.18         8.02 
TCGA-D8-A73X TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10A 
       12.10        43.00        34.42        27.52        46.59        40.41 
TCGA-E2-A10B TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P 
       37.51        28.44        28.87        47.15        44.68        40.96 
TCGA-E2-A14Q TCGA-E2-A14S TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14W TCGA-E2-A14X 
       38.24        33.17        43.33        34.26        32.02        31.96 
TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A152 TCGA-E2-A153 TCGA-E2-A155 TCGA-E2-A156 
       28.60        18.51        27.12        23.24        21.04        23.87 
TCGA-E2-A158 TCGA-E2-A15A TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15F TCGA-E2-A15G 
       14.79        23.34        22.82        17.29        21.63        18.21 
TCGA-E2-A15H TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M 
       12.92        17.42        19.40         9.04        20.58        11.05 
TCGA-E2-A15O TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1B0 
       13.02        19.56        17.06        14.07        14.99        53.62 
TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BC TCGA-E2-A1IE 
       53.03        33.01        32.35        28.50        16.47        38.30 
TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1IH TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IK 
       37.41        32.78        33.73        33.70        28.44        22.65 
TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L8 TCGA-E2-A1L9 
        3.88        22.19        11.08        54.18        39.62        19.66 
TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LL TCGA-E2-A2P6 TCGA-E2-A3DX 
       24.59        40.47        28.90        43.04         5.52        15.72 
TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A576 TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 
        8.28        30.61        34.29        34.82        32.88        36.82 
TCGA-E9-A1N6 TCGA-E9-A1N8 TCGA-E9-A1NA TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NE 
       13.48        12.00        36.56        39.55        12.59        35.77 
TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R3 
       35.24        25.84         9.86        11.90        28.27         2.56 
TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RA TCGA-E9-A1RB 
        6.12         3.02         2.76        21.21        32.09        32.09 
TCGA-E9-A1RC TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RH TCGA-E9-A1RI 
       40.24         1.12        34.65         6.58        34.59        35.64 
TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22B 
       34.13        32.05        12.53        13.32        39.09        22.75 
TCGA-E9-A22D TCGA-E9-A22G TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A247 TCGA-E9-A248 
       41.03        23.51        20.71        17.06        27.22         1.94 
TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A2JT TCGA-E9-A3HO 
        7.13        24.56         0.72        29.72         0.76        26.07 
TCGA-E9-A3Q9 TCGA-E9-A54X TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UO 
       18.41        12.33        23.84        14.70         0.79        13.81 
TCGA-E9-A6HE TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 
       15.39        12.20        39.72         8.48        18.21        18.90 
TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J5 TCGA-EW-A1J6 TCGA-EW-A1OV TCGA-EW-A1OW 
       13.25        16.57        15.68        28.77        25.94        22.82 
TCGA-EW-A1OX TCGA-EW-A1OZ TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P3 TCGA-EW-A1P5 
       29.95        40.41        41.13        39.78        52.96        23.11 
TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1PA TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A1PD 
       18.48        30.08        18.90        19.99         6.15        13.94 
TCGA-EW-A1PE TCGA-EW-A1PF TCGA-EW-A1PG TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FV 
       10.52        14.43        34.55        55.00        52.73        25.91 
TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A3U0 TCGA-EW-A423 TCGA-EW-A424 TCGA-GM-A2D9 
       22.09        34.03        17.49        10.16        23.51        59.57 
TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DC TCGA-GM-A2DD TCGA-GM-A2DF TCGA-GM-A2DH 
      216.76        79.10        83.34        75.02        70.85        72.10 
TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A2DO TCGA-GM-A3NW 
       86.96       115.69       106.06       101.62        85.35       110.50 
TCGA-GM-A3XG TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2NL 
       43.73        66.38        72.03        13.55        18.12         2.60 
TCGA-JL-A3YX TCGA-LD-A7W6 TCGA-LD-A9QF TCGA-LL-A440 TCGA-LL-A441 TCGA-LL-A442 
       11.57        13.28        10.62        24.95        11.44        10.95 
TCGA-LL-A50Y TCGA-LL-A5YL TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LL-A6FP 
       25.05        17.06        15.32        14.70        14.47        22.26 
TCGA-LL-A6FQ TCGA-LL-A6FR TCGA-LL-A73Y TCGA-LL-A740 TCGA-LL-A7SZ TCGA-LL-A7T0 
        2.63        16.08        15.68        14.50        14.70        12.36 
TCGA-LL-A8F5 TCGA-LL-A9Q3 TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D6 
       14.73        14.07        27.91        22.39         2.10        36.30 
TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RU TCGA-OL-A5RV TCGA-OL-A5RW 
       58.52        31.99        58.62        40.08        34.92        36.36 
TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66L 
       28.87        24.72        26.70        23.47        65.62        42.77 
TCGA-OL-A66N TCGA-OL-A66O TCGA-OL-A66P TCGA-OL-A6VQ TCGA-OL-A6VR TCGA-OL-A97C 
       26.04        17.36        14.07        19.73        40.11         8.91 
TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE TCGA-PL-A8LX TCGA-PL-A8LY TCGA-PL-A8LZ 
       47.01        64.21        86.96         0.16         0.26         9.93 
TCGA-S3-A6ZF TCGA-S3-A6ZG TCGA-S3-A6ZH TCGA-S3-AA0Z TCGA-S3-AA11 TCGA-S3-AA12 
       16.50        13.12        16.93        16.80        13.84        15.35 
TCGA-S3-AA14 TCGA-S3-AA15 TCGA-UL-AAZ6 TCGA-WT-AB41 TCGA-WT-AB44 TCGA-XX-A899 
       14.96        13.84        17.03        52.96        29.03        15.35 
TCGA-XX-A89A TCGA-Z7-A8R5 TCGA-Z7-A8R6 
       16.04       108.07       107.05 

  DEL PEAK 28(12Q24.31) MUTATED DEL PEAK 28(12Q24.31) WILD-TYPE 
                           0.33                            0.03 
  DEL PEAK 28(12Q24.31) MUTATED DEL PEAK 28(12Q24.31) WILD-TYPE 
                         211.56                          234.28 
  DEL PEAK 28(12Q24.31) MUTATED DEL PEAK 28(12Q24.31) WILD-TYPE 
                          24.39                           24.56 
[1] "0.3 - 211.6 (24.4)" "0.0 - 234.3 (24.6)"
[1] "hr=" "1.3"
D57V2, continuous
                                 vv
clus                              STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  DEL PEAK 28(12Q24.31) MUTATED        16       13        0        1        68
  DEL PEAK 28(12Q24.31) WILD-TYPE      73       68        8        2       285
                                 vv
clus                              STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  DEL PEAK 28(12Q24.31) MUTATED          54         0         25          6
  DEL PEAK 28(12Q24.31) WILD-TYPE       191         2        125         23
                                 vv
clus                              STAGE IIIC STAGE IV STAGE TIS STAGE X
  DEL PEAK 28(12Q24.31) MUTATED           15        4         0       2
  DEL PEAK 28(12Q24.31) WILD-TYPE         48       16         1      11
D57V3, multiclass
            clus
vv           DEL PEAK 28(12Q24.31) MUTATED DEL PEAK 28(12Q24.31) WILD-TYPE
  STAGE I                               16                              73
  STAGE IA                              13                              68
  STAGE IB                               0                               8
  STAGE II                               1                               2
  STAGE IIA                             68                             285
  STAGE IIB                             54                             191
  STAGE III                              0                               2
  STAGE IIIA                            25                             125
  STAGE IIIB                             6                              23
  STAGE IIIC                            15                              48
  STAGE IV                               4                              16
  STAGE TIS                              0                               1
  STAGE X                                2                              11
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                               T1  T2  T3  T4
  DEL PEAK 28(12Q24.31) MUTATED    39 132  23   9
  DEL PEAK 28(12Q24.31) WILD-TYPE 233 484 107  31
D57V4, multiclass
    clus
vv   DEL PEAK 28(12Q24.31) MUTATED DEL PEAK 28(12Q24.31) WILD-TYPE
  T1                            39                             233
  T2                           132                             484
  T3                            23                             107
  T4                             9                              31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                               N0  N1  N2  N3
  DEL PEAK 28(12Q24.31) MUTATED   103  61  22  16
  DEL PEAK 28(12Q24.31) WILD-TYPE 398 289  95  59
D57V5, multiclass
    clus
vv   DEL PEAK 28(12Q24.31) MUTATED DEL PEAK 28(12Q24.31) WILD-TYPE
  N0                           103                             398
  N1                            61                             289
  N2                            22                              95
  N3                            16                              59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D57V6, binary
                                 cls
clus                                0   1
  DEL PEAK 28(12Q24.31) MUTATED   175   4
  DEL PEAK 28(12Q24.31) WILD-TYPE 704  17
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 28(12Q24.31) MUTATED    175    4
  DEL PEAK 28(12Q24.31) WILD-TYPE  704   17
   clus
vv  DEL PEAK 28(12Q24.31) MUTATED DEL PEAK 28(12Q24.31) WILD-TYPE
  0                           175                             704
  1                             4                              17
[1] 2 2
[1] FALSE
D57V7, binary
                                 cls
clus                                0   1
  DEL PEAK 28(12Q24.31) MUTATED   205   0
  DEL PEAK 28(12Q24.31) WILD-TYPE 846  11
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 28(12Q24.31) MUTATED    205    0
  DEL PEAK 28(12Q24.31) WILD-TYPE  846   11
        clus
vv       DEL PEAK 28(12Q24.31) MUTATED DEL PEAK 28(12Q24.31) WILD-TYPE
  FEMALE                           205                             846
  MALE                               0                              11
[1] 2 2
[1] FALSE
                                 vv
clus                              INFILTRATING CARCINOMA NOS
  DEL PEAK 28(12Q24.31) MUTATED                            0
  DEL PEAK 28(12Q24.31) WILD-TYPE                          1
                                 vv
clus                              INFILTRATING DUCTAL CARCINOMA
  DEL PEAK 28(12Q24.31) MUTATED                             157
  DEL PEAK 28(12Q24.31) WILD-TYPE                           606
                                 vv
clus                              INFILTRATING LOBULAR CARCINOMA
  DEL PEAK 28(12Q24.31) MUTATED                               29
  DEL PEAK 28(12Q24.31) WILD-TYPE                            163
                                 vv
clus                              MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  DEL PEAK 28(12Q24.31) MUTATED                     3                     0
  DEL PEAK 28(12Q24.31) WILD-TYPE                   3                     4
                                 vv
clus                              MIXED HISTOLOGY (PLEASE SPECIFY)
  DEL PEAK 28(12Q24.31) MUTATED                                  6
  DEL PEAK 28(12Q24.31) WILD-TYPE                               24
                                 vv
clus                              MUCINOUS CARCINOMA OTHER  SPECIFY
  DEL PEAK 28(12Q24.31) MUTATED                    0             10
  DEL PEAK 28(12Q24.31) WILD-TYPE                 17             38
D57V8, multiclass
                                  clus
vv                                 DEL PEAK 28(12Q24.31) MUTATED
  INFILTRATING CARCINOMA NOS                                   0
  INFILTRATING DUCTAL CARCINOMA                              157
  INFILTRATING LOBULAR CARCINOMA                              29
  MEDULLARY CARCINOMA                                          3
  METAPLASTIC CARCINOMA                                        0
  MIXED HISTOLOGY (PLEASE SPECIFY)                             6
  MUCINOUS CARCINOMA                                           0
  OTHER  SPECIFY                                              10
                                  clus
vv                                 DEL PEAK 28(12Q24.31) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                     1
  INFILTRATING DUCTAL CARCINOMA                                606
  INFILTRATING LOBULAR CARCINOMA                               163
  MEDULLARY CARCINOMA                                            3
  METAPLASTIC CARCINOMA                                          4
  MIXED HISTOLOGY (PLEASE SPECIFY)                              24
  MUCINOUS CARCINOMA                                            17
  OTHER  SPECIFY                                                38
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D57V9, binary
                                 cls
clus                                0   1
  DEL PEAK 28(12Q24.31) MUTATED    55 150
  DEL PEAK 28(12Q24.31) WILD-TYPE 233 624
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 28(12Q24.31) MUTATED     55  150
  DEL PEAK 28(12Q24.31) WILD-TYPE  233  624
     clus
vv    DEL PEAK 28(12Q24.31) MUTATED DEL PEAK 28(12Q24.31) WILD-TYPE
  NO                             55                             233
  YES                           150                             624
[1] 2 2
[1] FALSE
D57V10, continuous
                                 vv
clus                              AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 28(12Q24.31) MUTATED                                  0    11
  DEL PEAK 28(12Q24.31) WILD-TYPE                                1    49
                                 vv
clus                              BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 28(12Q24.31) MUTATED                          45   133
  DEL PEAK 28(12Q24.31) WILD-TYPE                       125   603
D57V11, multiclass
                                  clus
vv                                 DEL PEAK 28(12Q24.31) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                             0
  ASIAN                                                       11
  BLACK OR AFRICAN AMERICAN                                   45
  WHITE                                                      133
                                  clus
vv                                 DEL PEAK 28(12Q24.31) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                               1
  ASIAN                                                         49
  BLACK OR AFRICAN AMERICAN                                    125
  WHITE                                                        603
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D57V12, binary
                                 cls
clus                                0   1
  DEL PEAK 28(12Q24.31) MUTATED     5 171
  DEL PEAK 28(12Q24.31) WILD-TYPE  33 687
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 28(12Q24.31) MUTATED      5  171
  DEL PEAK 28(12Q24.31) WILD-TYPE   33  687
                        clus
vv                       DEL PEAK 28(12Q24.31) MUTATED
  HISPANIC OR LATINO                                 5
  NOT HISPANIC OR LATINO                           171
                        clus
vv                       DEL PEAK 28(12Q24.31) WILD-TYPE
  HISPANIC OR LATINO                                  33
  NOT HISPANIC OR LATINO                             687
[1] 2 2
[1] FALSE

Clustering(58) Variable = DEL PEAK 29(13Q14.2) MUTATION ANALYSIS
D58V1, survival
                                sevent
clus2                              0   1
  DEL PEAK 29(13Q14.2) MUTATED   415  63
  DEL PEAK 29(13Q14.2) WILD-TYPE 501  65
  DEL PEAK 29(13Q14.2) MUTATED DEL PEAK 29(13Q14.2) WILD-TYPE 
                           478                            566 
  DEL PEAK 29(13Q14.2) MUTATED DEL PEAK 29(13Q14.2) WILD-TYPE 
                            63                             65 
$`DEL PEAK 29(13Q14.2) MUTATED`
TCGA-3C-AAAU TCGA-3C-AALI TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SI TCGA-A1-A0SJ 
      129.14       131.67        14.37        43.43        20.88        13.68 
TCGA-A1-A0SK TCGA-A1-A0SN TCGA-A1-A0SO TCGA-A1-A0SP TCGA-A1-A0SQ TCGA-A2-A04Q 
       31.79        39.32        28.01        19.20        18.21        78.41 
TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04X TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CS 
      121.94        73.84        55.43        24.79       114.81        75.55 
TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0CX TCGA-A2-A0D0 
       75.25         5.19        98.99       107.93        56.81        67.33 
TCGA-A2-A0D1 TCGA-A2-A0D4 TCGA-A2-A0EO TCGA-A2-A0ER TCGA-A2-A0EU TCGA-A2-A0EV 
       34.55        25.22        80.28        74.40        34.29        31.82 
TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0T4 TCGA-A2-A0YE TCGA-A2-A0YI TCGA-A2-A0YL 
       27.12        44.88        20.52        18.21        49.48        48.46 
TCGA-A2-A0YM TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A25E TCGA-A2-A3XT 
       31.73        23.77        23.47        17.36       105.34        83.01 
TCGA-A2-A3XU TCGA-A2-A3XW TCGA-A2-A3XX TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4RX 
       29.98        49.48        47.31        38.37         7.30        24.39 
TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A7-A0CD TCGA-A7-A0CE TCGA-A7-A0CJ TCGA-A7-A0DC 
       26.96        21.14        38.30        35.31        30.61        29.79 
TCGA-A7-A13D TCGA-A7-A13E TCGA-A7-A13F TCGA-A7-A26E TCGA-A7-A26G TCGA-A7-A26I 
       31.73        20.19        25.15        31.36        23.74        21.73 
TCGA-A7-A2KD TCGA-A7-A3IZ TCGA-A7-A4SA TCGA-A7-A4SD TCGA-A7-A4SF TCGA-A7-A6VV 
       22.32        10.59        14.93        14.50        17.92        10.29 
TCGA-A7-A6VW TCGA-A7-A6VX TCGA-A7-A6VY TCGA-A8-A06O TCGA-A8-A06R TCGA-A8-A06T 
        9.37        10.42         8.75        13.02        17.98        53.06 
TCGA-A8-A06U TCGA-A8-A06X TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A076 TCGA-A8-A079 
       29.03        31.00        26.01         1.02        53.98         9.01 
TCGA-A8-A07B TCGA-A8-A07F TCGA-A8-A07I TCGA-A8-A07L TCGA-A8-A07O TCGA-A8-A07P 
       43.00        18.97        14.01        32.05         9.99        10.98 
TCGA-A8-A07R TCGA-A8-A07W TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08B TCGA-A8-A08F 
        8.98         9.99        36.95        13.02        38.01        33.01 
TCGA-A8-A08I TCGA-A8-A08L TCGA-A8-A08O TCGA-A8-A08P TCGA-A8-A08S TCGA-A8-A092 
       12.00         9.99        31.00        31.00        33.01        30.97 
TCGA-A8-A095 TCGA-A8-A099 TCGA-A8-A09B TCGA-A8-A09I TCGA-A8-A09K TCGA-A8-A09M 
       41.98         9.99        12.00        45.07        29.98        33.07 
TCGA-A8-A09N TCGA-A8-A09Q TCGA-A8-A09W TCGA-A8-A09X TCGA-A8-A0A2 TCGA-A8-A0A9 
        1.02        25.02         0.99        14.01        19.04        27.02 
TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23E TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2QH 
       17.03        38.04         2.37        38.53        99.35        33.04 
TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3W5 TCGA-AC-A3W6 TCGA-AC-A62X TCGA-AC-A62Y 
        2.27        32.45        16.57        19.79        13.71        17.42 
TCGA-AC-A6IW TCGA-AC-A7VB TCGA-AC-A7VC TCGA-AC-A8OP TCGA-AN-A03X TCGA-AN-A046 
       13.58         8.22         0.03        20.19         0.33         0.33 
TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AL TCGA-AN-A0AR 
        2.96         1.78         1.71         9.96         6.51         0.33 
TCGA-AN-A0AT TCGA-AN-A0FS TCGA-AN-A0FX TCGA-AN-A0FY TCGA-AN-A0XL TCGA-AN-A0XN 
        0.33         6.28         0.33         0.33         0.33         0.33 
TCGA-AN-A0XO TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03L 
       12.33         0.33         0.33         5.33         5.59        80.28 
TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A0J3 TCGA-AO-A0J4 
       66.77        81.63        68.75        47.87        21.40        52.18 
TCGA-AO-A0J6 TCGA-AO-A0JE TCGA-AO-A0JG TCGA-AO-A0JI TCGA-AO-A0JJ TCGA-AO-A0JL 
       37.48        76.77        26.24        50.24        62.04        55.33 
TCGA-AO-A0JM TCGA-AO-A124 TCGA-AO-A126 TCGA-AO-A129 TCGA-AO-A12E TCGA-AO-A12F 
       71.80       102.58       108.72       108.03        57.30        48.36 
TCGA-AO-A12G TCGA-AO-A1KQ TCGA-AO-A1KR TCGA-AO-A1KS TCGA-AO-A1KT TCGA-AQ-A04H 
       41.62        61.87        70.39         0.53        17.79        24.79 
TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A1H2 TCGA-AQ-A54N TCGA-AQ-A54O TCGA-AQ-A7U7 
       26.93       130.09        15.62         2.56        32.91        19.20 
TCGA-AR-A0TP TCGA-AR-A0TR TCGA-AR-A0TV TCGA-AR-A0TX TCGA-AR-A0TZ TCGA-AR-A0U0 
      111.32         5.26        42.35        64.83       107.24        65.36 
TCGA-AR-A0U1 TCGA-AR-A0U2 TCGA-AR-A0U4 TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AJ 
      101.95        83.87        85.97        75.55        61.84        52.77 
TCGA-AR-A1AK TCGA-AR-A1AR TCGA-AR-A1AW TCGA-AR-A1AY TCGA-AR-A24K TCGA-AR-A24L 
       51.25        17.23        63.62        33.73        50.89        94.22 
TCGA-AR-A24N TCGA-AR-A24Q TCGA-AR-A24S TCGA-AR-A24T TCGA-AR-A24V TCGA-AR-A24W 
       78.51       104.28        97.84        76.01        85.35        50.96 
TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A251 TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A255 
       79.00        89.00        78.48        73.18        72.76        58.92 
TCGA-AR-A2LK TCGA-AR-A5QM TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0IB TCGA-B6-A0IE 
       54.21        54.74        10.59        77.62       129.57        65.72 
TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RL TCGA-B6-A0RP TCGA-B6-A0RQ 
      140.88       211.56        68.45        81.17       102.77       140.48 
TCGA-B6-A0RU TCGA-B6-A0WS TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0X5 
      131.21        97.48        79.63        18.35        21.47        68.94 
TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A401 
       43.59       101.52        73.51       139.17       170.17        85.35 
TCGA-B6-A408 TCGA-BH-A0AV TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0AZ TCGA-BH-A0B0 
       68.12        59.84        20.45        25.55        28.50        46.95 
TCGA-BH-A0B4 TCGA-BH-A0B6 TCGA-BH-A0B7 TCGA-BH-A0B9 TCGA-BH-A0BA TCGA-BH-A0BC 
       39.16        56.94        56.98        51.68        37.22        32.02 
TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BP TCGA-BH-A0BR TCGA-BH-A0BV TCGA-BH-A0BW 
       21.70        44.05        48.69        53.69        49.94        11.67 
TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DH 
       49.05        41.75        44.02        42.90        45.83        38.01 
TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0E0 TCGA-BH-A0E6 
       13.91        48.23        15.65         3.22         4.41         9.63 
TCGA-BH-A0E9 TCGA-BH-A0EE TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H7 TCGA-BH-A0HB 
       46.19        31.00        10.78        15.16        23.08        26.50 
TCGA-BH-A0HU TCGA-BH-A0HX TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W7 TCGA-BH-A0WA 
       12.89        27.25         5.59        23.93        44.81        23.05 
TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18Q TCGA-BH-A18S TCGA-BH-A18T TCGA-BH-A18U 
       90.84        26.66        55.63        66.05         7.36        51.39 
TCGA-BH-A1EN TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1EY TCGA-BH-A1F6 
       69.93        42.28        12.00        55.69        17.69        97.48 
TCGA-BH-A1F8 TCGA-BH-A1FC TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FH TCGA-BH-A1FJ 
       24.66       114.15        33.17        74.73        36.92        63.35 
TCGA-BH-A1FN TCGA-BH-A1FU TCGA-BH-A202 TCGA-BH-A209 TCGA-BH-A28Q TCGA-BH-A5IZ 
       72.07        72.07        26.14       130.16         6.44        18.64 
TCGA-BH-A5J0 TCGA-BH-A6R8 TCGA-BH-A8FY TCGA-BH-A8FZ TCGA-C8-A12M TCGA-C8-A12O 
       23.51         9.63         9.70        18.87        11.77        12.66 
TCGA-C8-A12P TCGA-C8-A12U TCGA-C8-A135 TCGA-C8-A138 TCGA-C8-A1HF TCGA-C8-A1HG 
       11.77        12.66         1.05         4.08        10.92        11.34 
TCGA-C8-A1HI TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HN TCGA-C8-A26V TCGA-C8-A26X 
       11.28         0.16        12.03         3.25         0.30         0.36 
TCGA-C8-A26Y TCGA-C8-A274 TCGA-C8-A278 TCGA-C8-A27B TCGA-C8-A3M8 TCGA-C8-A8HR 
        0.43         9.53         9.50         0.99         0.23        13.41 
TCGA-D8-A13Y TCGA-D8-A13Z TCGA-D8-A140 TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A145 
       11.90        20.88        13.25        13.97        14.17        13.48 
TCGA-D8-A146 TCGA-D8-A147 TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JC 
       21.14        19.20        14.17        17.49        16.50        15.78 
TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JG TCGA-D8-A1JI TCGA-D8-A1JK TCGA-D8-A1JL 
       18.15        18.90        12.03        18.97        20.12        20.09 
TCGA-D8-A1JM TCGA-D8-A1JP TCGA-D8-A1JT TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X9 
       19.40        21.01        13.32        18.58        17.79        23.90 
TCGA-D8-A1XA TCGA-D8-A1XD TCGA-D8-A1XK TCGA-D8-A1XL TCGA-D8-A1XR TCGA-D8-A1XU 
       27.58        17.16        14.50        19.92        15.85        12.99 
TCGA-D8-A1XY TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 TCGA-D8-A1Y3 TCGA-D8-A27F 
       16.54        15.52         9.93        14.24        14.14        16.04 
TCGA-D8-A27I TCGA-D8-A27N TCGA-D8-A27R TCGA-D8-A27T TCGA-D8-A27V TCGA-E2-A107 
       14.43         4.80        10.09        13.08        12.53        34.42 
TCGA-E2-A109 TCGA-E2-A10C TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14T TCGA-E2-A14V 
       46.59        40.11        47.15        44.68        33.30        34.26 
TCGA-E2-A14W TCGA-E2-A14X TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A155 TCGA-E2-A156 
       32.02        31.96        25.41        27.12        21.04        23.87 
TCGA-E2-A158 TCGA-E2-A159 TCGA-E2-A15G TCGA-E2-A15M TCGA-E2-A15O TCGA-E2-A15P 
       14.79        25.05        18.21        11.05        13.02        19.56 
TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A1AZ TCGA-E2-A1IE TCGA-E2-A1IG TCGA-E2-A1II 
       17.06        14.07        60.53        38.30        32.78        33.70 
TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IO TCGA-E2-A1L8 TCGA-E2-A1LA TCGA-E2-A1LG 
        3.88        22.19        20.98        39.62        24.59        18.87 
TCGA-E2-A1LK TCGA-E2-A1LL TCGA-E2-A2P5 TCGA-E2-A56Z TCGA-E2-A576 TCGA-E9-A1N6 
        8.75        43.04        16.93         8.28        34.29        13.48 
TCGA-E9-A1N8 TCGA-E9-A1N9 TCGA-E9-A1NA TCGA-E9-A1NE TCGA-E9-A1NI TCGA-E9-A1R2 
       12.00        13.12        36.56        35.77         9.86        34.95 
TCGA-E9-A1R6 TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RD TCGA-E9-A1RG 
        2.76        32.09        32.09        40.24         1.12        21.27 
TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A22H TCGA-E9-A247 TCGA-E9-A248 
       41.03        12.89        23.51        20.71        27.22         1.94 
TCGA-E9-A249 TCGA-E9-A295 TCGA-E9-A3HO TCGA-E9-A3QA TCGA-E9-A54Y TCGA-E9-A5UO 
        7.13         0.72        26.07        30.18        23.84        13.81 
TCGA-E9-A5UP TCGA-E9-A6HE TCGA-EW-A1IW TCGA-EW-A1OV TCGA-EW-A1OW TCGA-EW-A1OY 
       14.40        15.39        12.20        25.94        22.82        29.85 
TCGA-EW-A1OZ TCGA-EW-A1P3 TCGA-EW-A1P5 TCGA-EW-A1P7 TCGA-EW-A1P8 TCGA-EW-A1PA 
       40.41        52.96        23.11        30.08         7.86        18.90 
TCGA-EW-A1PC TCGA-EW-A1PF TCGA-EW-A1PH TCGA-EW-A2FS TCGA-EW-A3U0 TCGA-GM-A2DB 
        6.15        14.43        19.96        52.73        17.49        79.10 
TCGA-GM-A2DC TCGA-GM-A2DD TCGA-GM-A2DF TCGA-GM-A2DL TCGA-GM-A3NW TCGA-GM-A3XL 
       83.34        75.02        70.85       115.69       110.50        69.30 
TCGA-GM-A5PX TCGA-HN-A2NL TCGA-LD-A66U TCGA-LD-A74U TCGA-LD-A7W5 TCGA-LL-A5YM 
       18.12         2.60        21.24        13.22         7.10        15.32 
TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LL-A5YP TCGA-LL-A6FP TCGA-LL-A6FR TCGA-LL-A7SZ 
       14.70        14.47        14.79        22.26        16.08        14.70 
TCGA-LL-A7T0 TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OL-A5D7 TCGA-OL-A5DA TCGA-OL-A5RW 
       12.36        27.91        22.39        58.52        58.62        36.36 
TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66I TCGA-OL-A66K TCGA-OL-A66N TCGA-OL-A66O 
       22.32        20.38        23.47        41.92        26.04        17.36 
TCGA-PE-A5DC TCGA-PE-A5DD TCGA-S3-A6ZG TCGA-S3-A6ZH TCGA-S3-AA10 TCGA-S3-AA14 
       47.01        64.21        13.12        16.93        15.39        14.96 
TCGA-S3-AA17 TCGA-UL-AAZ6 TCGA-XX-A89A TCGA-Z7-A8R5 
       13.94        17.03        16.04       108.07 

$`DEL PEAK 29(13Q14.2) WILD-TYPE`
TCGA-3C-AALJ TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT0 TCGA-5L-AAT1 TCGA-5T-A9QA 
       42.81        40.14        11.44        48.56        48.36         9.96 
TCGA-A1-A0SB TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SM TCGA-A2-A04N 
        8.52        48.10        14.27        47.24         7.96       104.81 
TCGA-A2-A04P TCGA-A2-A04U TCGA-A2-A04V TCGA-A2-A04W TCGA-A2-A04Y TCGA-A2-A0CK 
       18.02        87.25        63.12       101.98        36.13       136.73 
TCGA-A2-A0CL TCGA-A2-A0CP TCGA-A2-A0CQ TCGA-A2-A0CR TCGA-A2-A0D2 TCGA-A2-A0D3 
       99.12        92.48        88.60       107.93        33.76        61.58 
TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EP TCGA-A2-A0EQ TCGA-A2-A0ES TCGA-A2-A0ET 
      101.72       134.40       107.61        79.76        72.00        35.05 
TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0EY TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SX 
       61.94        24.72        63.29        99.19        54.64        50.43 
TCGA-A2-A0SY TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T5 
       44.28        17.52        17.13         8.38        49.84        17.46 
TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YF TCGA-A2-A0YG 
       18.90        20.75        32.55        25.28        50.47        21.90 
TCGA-A2-A0YH TCGA-A2-A0YJ TCGA-A2-A0YK TCGA-A2-A1FX TCGA-A2-A1FZ TCGA-A2-A1G0 
       21.67        18.61        19.33        60.72        22.45        20.25 
TCGA-A2-A1G1 TCGA-A2-A1G4 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25A TCGA-A2-A25B 
       19.20        19.56        16.47        52.47       107.70        42.44 
TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD TCGA-A2-A3XS 
       17.19        18.15        10.59        20.88        39.65        33.93 
TCGA-A2-A3XV TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S3 
       32.75        34.98        50.37        21.30        23.21        21.90 
TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A13G 
       34.29        35.47        37.45        35.67        33.11        23.61 
TCGA-A7-A13H TCGA-A7-A26F TCGA-A7-A26H TCGA-A7-A26J TCGA-A7-A3IY TCGA-A7-A3J0 
       29.56        24.26        23.80        20.61        11.34        10.29 
TCGA-A7-A3J1 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A426 TCGA-A7-A4SB TCGA-A7-A4SE 
       11.28        13.41        14.70        11.97        13.74        21.17 
TCGA-A7-A56D TCGA-A7-A5ZV TCGA-A7-A5ZW TCGA-A7-A5ZX TCGA-A8-A06P TCGA-A8-A06Q 
       14.73        12.10        10.72        11.05        13.02         1.02 
TCGA-A8-A075 TCGA-A8-A07E TCGA-A8-A07G TCGA-A8-A07J TCGA-A8-A07S TCGA-A8-A07U 
       17.03        19.99        18.97        12.00         7.99        24.99 
TCGA-A8-A07Z TCGA-A8-A082 TCGA-A8-A084 TCGA-A8-A08A TCGA-A8-A08C TCGA-A8-A08G 
       45.07        18.05        15.06         0.99        28.96        19.96 
TCGA-A8-A08J TCGA-A8-A08R TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A08Z TCGA-A8-A091 
       37.05         0.99       112.08        43.00        40.01        33.01 
TCGA-A8-A093 TCGA-A8-A097 TCGA-A8-A09A TCGA-A8-A09C TCGA-A8-A09D TCGA-A8-A09E 
       17.95        12.00         9.99         1.02        50.04        49.05 
TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A0A1 TCGA-A8-A0A4 TCGA-A8-A0A6 
        8.98        19.04        15.02        12.00        13.02        21.04 
TCGA-A8-A0A7 TCGA-AC-A23C TCGA-AC-A23G TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2FB 
        0.99         0.95        10.85         5.72         1.48        40.57 
TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A2QI 
       55.43        36.99        38.79        26.04        50.70         0.92 
TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3TN TCGA-AC-A3YI TCGA-AC-A3YJ 
       16.31        14.83        22.19        14.99        23.24        24.79 
TCGA-AC-A5XS TCGA-AC-A62V TCGA-AC-A6IV TCGA-AC-A6IX TCGA-AC-A6NO TCGA-AC-A8OQ 
        1.55        11.44        18.67        12.26         1.68         1.12 
TCGA-AC-A8OR TCGA-AC-A8OS TCGA-AN-A03Y TCGA-AN-A041 TCGA-AN-A049 TCGA-AN-A0AK 
        1.32         2.30         0.33         0.23         0.62         7.36 
TCGA-AN-A0AM TCGA-AN-A0AS TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FK 
        0.16         0.33         6.44         5.65         7.96         7.00 
TCGA-AN-A0FL TCGA-AN-A0FN TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FZ 
        7.59         7.17         7.04         0.33         0.36         0.33 
TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS TCGA-AO-A03M TCGA-AO-A03P TCGA-AO-A03U 
        0.30         0.33         0.33        61.35        95.70        58.95 
TCGA-AO-A03V TCGA-AO-A0J2 TCGA-AO-A0J5 TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 
       29.13        32.78        26.04        20.32        22.36        53.03 
TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JC TCGA-AO-A0JD TCGA-AO-A0JF TCGA-AO-A125 
       21.53        50.70        50.86        72.00        21.37        99.25 
TCGA-AO-A128 TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A12H TCGA-AO-A1KO 
      106.78        90.58        98.27        64.04        28.37        14.73 
TCGA-AO-A1KP TCGA-AQ-A0Y5 TCGA-AQ-A1H3 TCGA-AR-A0TQ TCGA-AR-A0TS TCGA-AR-A0TT 
       82.62         5.65        32.52        73.64        74.79        86.66 
TCGA-AR-A0TW TCGA-AR-A0TY TCGA-AR-A0U3 TCGA-AR-A1AL TCGA-AR-A1AM TCGA-AR-A1AN 
       98.93        55.86       114.02        48.82        76.11        43.73 
TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AQ TCGA-AR-A1AS TCGA-AR-A1AU TCGA-AR-A1AV 
       43.56        39.98        43.07        37.81        76.21        61.28 
TCGA-AR-A1AX TCGA-AR-A24H TCGA-AR-A24M TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24R 
       62.14       160.90        96.89        84.20         2.76        87.22 
TCGA-AR-A24U TCGA-AR-A24X TCGA-AR-A256 TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ 
       53.36        83.77        93.83       143.21        20.25        62.86 
TCGA-AR-A2LL TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A2LR 
       66.15        52.11        38.17        39.39        40.54        20.38 
TCGA-AR-A5QN TCGA-AR-A5QP TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0I9 TCGA-B6-A0IA 
       16.04        20.45       143.38       149.59        12.13       220.90 
TCGA-B6-A0IC TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0IM 
       50.70       146.50       112.37       176.98        18.77       126.12 
TCGA-B6-A0IN TCGA-B6-A0IO TCGA-B6-A0IP TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RM 
       84.59       110.14       110.93       189.01       234.28        78.02 
TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RS TCGA-B6-A0RT TCGA-B6-A0RV TCGA-B6-A0WT 
      172.96       162.05       100.70        89.46       157.41       188.68 
TCGA-B6-A0WY TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X7 
      113.79       129.57       129.70       186.48        28.27        58.88 
TCGA-B6-A402 TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AU TCGA-BH-A0B2 TCGA-BH-A0B3 
       74.99       103.63        71.15        24.53        40.83        39.55 
TCGA-BH-A0B5 TCGA-BH-A0BD TCGA-BH-A0BF TCGA-BH-A0BG TCGA-BH-A0BM TCGA-BH-A0BO 
       48.36        18.21        25.71        24.85        61.68        35.67 
TCGA-BH-A0BQ TCGA-BH-A0BS TCGA-BH-A0BT TCGA-BH-A0C3 TCGA-BH-A0DE TCGA-BH-A0DG 
       27.19        53.95        45.57        48.13        31.17        23.44 
TCGA-BH-A0DI TCGA-BH-A0DO TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX 
       22.13        17.26         2.56        38.47        67.86        47.41 
TCGA-BH-A0DZ TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E7 TCGA-BH-A0EA TCGA-BH-A0EB 
       16.27        15.68        14.30        44.81        32.58        24.49 
TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H9 
       24.43        30.35        37.78        35.51        24.56        41.00 
TCGA-BH-A0HA TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ 
       52.96        20.38         5.85         2.50        13.61        36.85 
TCGA-BH-A0HW TCGA-BH-A0HY TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A18F TCGA-BH-A18G 
       51.32        50.79        24.95        42.35         8.81         2.01 
TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18R 
        7.23        20.12        72.56        37.74        30.28        37.55 
TCGA-BH-A18V TCGA-BH-A1EO TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EX TCGA-BH-A1F0 
       51.16        91.99       113.82        82.85        49.58        25.81 
TCGA-BH-A1F2 TCGA-BH-A1F5 TCGA-BH-A1FB TCGA-BH-A1FG TCGA-BH-A1FL TCGA-BH-A1FM 
       31.53        89.16       120.62       122.89        55.00        45.63 
TCGA-BH-A1FR TCGA-BH-A201 TCGA-BH-A203 TCGA-BH-A204 TCGA-BH-A208 TCGA-BH-A28O 
      144.59        28.14        38.60        83.31        57.83        10.65 
TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A6R9 TCGA-BH-A8G0 
       20.12        10.52       109.28         8.94         5.26        21.76 
TCGA-BH-AB28 TCGA-C8-A12L TCGA-C8-A12N TCGA-C8-A12Q TCGA-C8-A12V TCGA-C8-A12W 
        9.44        11.93        11.77        12.66        12.66        12.66 
TCGA-C8-A12X TCGA-C8-A12Z TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A132 TCGA-C8-A134 
       12.66         0.39         3.16         2.24         1.87         1.12 
TCGA-C8-A137 TCGA-C8-A1HE TCGA-C8-A1HL TCGA-C8-A1HM TCGA-C8-A26W TCGA-C8-A26Z 
        4.11        12.33        10.42         2.30         0.23         8.28 
TCGA-C8-A273 TCGA-C8-A275 TCGA-C8-A27A TCGA-C8-A3M7 TCGA-C8-A8HP TCGA-C8-A8HQ 
        9.67         0.03        12.20         0.03        13.02        12.49 
TCGA-C8-A9FZ TCGA-D8-A141 TCGA-D8-A1JB TCGA-D8-A1JF TCGA-D8-A1JH TCGA-D8-A1JJ 
       19.46        20.58        18.71        12.03        14.01        20.09 
TCGA-D8-A1JN TCGA-D8-A1JS TCGA-D8-A1JU TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1XB 
       20.38        12.20        14.70        16.73        25.74        18.15 
TCGA-D8-A1XC TCGA-D8-A1XF TCGA-D8-A1XG TCGA-D8-A1XJ TCGA-D8-A1XM TCGA-D8-A1XO 
       12.39        15.22        14.73        21.83        17.69        15.55 
TCGA-D8-A1XQ TCGA-D8-A1XS TCGA-D8-A1XT TCGA-D8-A1XV TCGA-D8-A1XW TCGA-D8-A1XZ 
       16.41        16.31         6.35        15.16        12.66        15.32 
TCGA-D8-A27E TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27M 
       17.42        13.45        13.05         9.44        16.41        13.48 
TCGA-D8-A27P TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-D8-A73U 
        0.76        12.26        33.37        18.51        21.67        16.18 
TCGA-D8-A73W TCGA-D8-A73X TCGA-E2-A105 TCGA-E2-A108 TCGA-E2-A10A TCGA-E2-A10B 
        8.02        12.10        43.00        27.52        40.41        37.51 
TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14P TCGA-E2-A14Q TCGA-E2-A14R TCGA-E2-A14S 
       28.44        28.87        40.96        38.24        38.60        33.17 
TCGA-E2-A14U TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A153 TCGA-E2-A154 TCGA-E2-A15A 
       43.33        28.60        18.51        23.24        19.43        23.34 
TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15H TCGA-E2-A15I 
       22.82        17.29        20.71        21.63        12.92        17.42 
TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15T TCGA-E2-A1B0 TCGA-E2-A1B1 
       19.40         9.04        20.58        14.99        53.62        53.03 
TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BC TCGA-E2-A1BD TCGA-E2-A1IF 
       33.01        32.35        28.50        16.47        17.10        37.41 
TCGA-E2-A1IH TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L7 
       33.73        28.44        22.65        11.08        54.18        27.42 
TCGA-E2-A1L9 TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A2P6 
       19.66        40.47        28.90       106.75       102.61         5.52 
TCGA-E2-A3DX TCGA-E2-A570 TCGA-E2-A573 TCGA-E2-A574 TCGA-E2-A9RU TCGA-E9-A1N3 
       15.72        30.61        34.92        26.56        12.85        34.82 
TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NF TCGA-E9-A1NG 
       32.88        36.82        39.55        12.59        35.24        25.84 
TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R7 
       11.90        28.27         2.56         6.12         3.02        21.21 
TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RH TCGA-E9-A1RI TCGA-E9-A226 TCGA-E9-A227 
       34.65         6.58        34.59        35.64        34.13        32.05 
TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A243 TCGA-E9-A244 
       12.53        13.32        39.09        22.75        17.06         0.69 
TCGA-E9-A24A TCGA-E9-A2JS TCGA-E9-A2JT TCGA-E9-A3Q9 TCGA-E9-A3X8 TCGA-E9-A54X 
       24.56        29.72         0.76        18.41        15.72        12.33 
TCGA-E9-A5FK TCGA-E9-A5FL TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 
       14.70         0.79        39.72         8.48        18.21        18.90 
TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J5 TCGA-EW-A1J6 TCGA-EW-A1OX TCGA-EW-A1P0 
       13.25        16.57        15.68        28.77        29.95        41.13 
TCGA-EW-A1P1 TCGA-EW-A1P4 TCGA-EW-A1P6 TCGA-EW-A1PB TCGA-EW-A1PD TCGA-EW-A1PE 
       39.78        29.82        18.48        19.99        13.94        10.52 
TCGA-EW-A1PG TCGA-EW-A2FR TCGA-EW-A2FV TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A423 
       34.55        55.00        25.91        22.09        34.03        10.16 
TCGA-EW-A424 TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DH 
       23.51         7.40       109.87        59.57       216.76        72.10 
TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A2DO TCGA-GM-A3NY 
       85.15        86.96       106.06       101.62        85.35        38.20 
TCGA-GM-A3XG TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-HN-A2OB TCGA-JL-A3YW 
       43.73        66.38        72.03        13.55        62.43        11.84 
TCGA-JL-A3YX TCGA-LD-A7W6 TCGA-LD-A9QF TCGA-LL-A440 TCGA-LL-A441 TCGA-LL-A442 
       11.57        13.28        10.62        24.95        11.44        10.95 
TCGA-LL-A50Y TCGA-LL-A5YL TCGA-LL-A6FQ TCGA-LL-A73Y TCGA-LL-A73Z TCGA-LL-A740 
       25.05        17.06         2.63        15.68         7.46        14.50 
TCGA-LL-A8F5 TCGA-LL-A9Q3 TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5D8 TCGA-OL-A5RU 
       14.73        14.07         2.10        36.30        31.99        40.08 
TCGA-OL-A5RV TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A66H TCGA-OL-A66J TCGA-OL-A66L 
       34.92        28.87        24.72        26.70        65.62        42.77 
TCGA-OL-A66P TCGA-OL-A6VO TCGA-OL-A6VQ TCGA-OL-A6VR TCGA-OL-A97C TCGA-PE-A5DE 
       14.07        28.21        19.73        40.11         8.91        86.96 
TCGA-PL-A8LX TCGA-PL-A8LY TCGA-PL-A8LZ TCGA-S3-A6ZF TCGA-S3-AA0Z TCGA-S3-AA11 
        0.16         0.26         9.93        16.50        16.80        13.84 
TCGA-S3-AA12 TCGA-S3-AA15 TCGA-UU-A93S TCGA-W8-A86G TCGA-WT-AB41 TCGA-WT-AB44 
       15.35        13.84         3.81        11.41        52.96        29.03 
TCGA-XX-A899 TCGA-Z7-A8R6 
       15.35       107.05 

  DEL PEAK 29(13Q14.2) MUTATED DEL PEAK 29(13Q14.2) WILD-TYPE 
                          0.03                           0.03 
  DEL PEAK 29(13Q14.2) MUTATED DEL PEAK 29(13Q14.2) WILD-TYPE 
                        211.56                         234.28 
  DEL PEAK 29(13Q14.2) MUTATED DEL PEAK 29(13Q14.2) WILD-TYPE 
                        24.725                         24.460 
[1] "0.0 - 211.6 (24.7)" "0.0 - 234.3 (24.5)"
[1] "hr=" "1.3"
D58V2, continuous
                                vv
clus                             STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  DEL PEAK 29(13Q14.2) MUTATED        37       32        3        1       174
  DEL PEAK 29(13Q14.2) WILD-TYPE      52       49        5        2       179
                                vv
clus                             STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  DEL PEAK 29(13Q14.2) MUTATED         113         1         71         14
  DEL PEAK 29(13Q14.2) WILD-TYPE       132         1         79         15
                                vv
clus                             STAGE IIIC STAGE IV STAGE TIS STAGE X
  DEL PEAK 29(13Q14.2) MUTATED           26        7         1       5
  DEL PEAK 29(13Q14.2) WILD-TYPE         37       13         0       8
D58V3, multiclass
            clus
vv           DEL PEAK 29(13Q14.2) MUTATED DEL PEAK 29(13Q14.2) WILD-TYPE
  STAGE I                              37                             52
  STAGE IA                             32                             49
  STAGE IB                              3                              5
  STAGE II                              1                              2
  STAGE IIA                           174                            179
  STAGE IIB                           113                            132
  STAGE III                             1                              1
  STAGE IIIA                           71                             79
  STAGE IIIB                           14                             15
  STAGE IIIC                           26                             37
  STAGE IV                              7                             13
  STAGE TIS                             1                              0
  STAGE X                               5                              8
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              T1  T2  T3  T4
  DEL PEAK 29(13Q14.2) MUTATED   106 303  59  18
  DEL PEAK 29(13Q14.2) WILD-TYPE 166 313  71  22
D58V4, multiclass
    clus
vv   DEL PEAK 29(13Q14.2) MUTATED DEL PEAK 29(13Q14.2) WILD-TYPE
  T1                          106                            166
  T2                          303                            313
  T3                           59                             71
  T4                           18                             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              N0  N1  N2  N3
  DEL PEAK 29(13Q14.2) MUTATED   236 153  60  32
  DEL PEAK 29(13Q14.2) WILD-TYPE 265 197  57  43
D58V5, multiclass
    clus
vv   DEL PEAK 29(13Q14.2) MUTATED DEL PEAK 29(13Q14.2) WILD-TYPE
  N0                          236                            265
  N1                          153                            197
  N2                           60                             57
  N3                           32                             43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D58V6, binary
                                cls
clus                               0   1
  DEL PEAK 29(13Q14.2) MUTATED   410   8
  DEL PEAK 29(13Q14.2) WILD-TYPE 469  13
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 29(13Q14.2) MUTATED    410    8
  DEL PEAK 29(13Q14.2) WILD-TYPE  469   13
   clus
vv  DEL PEAK 29(13Q14.2) MUTATED DEL PEAK 29(13Q14.2) WILD-TYPE
  0                          410                            469
  1                            8                             13
[1] 2 2
[1] FALSE
D58V7, binary
                                cls
clus                               0   1
  DEL PEAK 29(13Q14.2) MUTATED   483   6
  DEL PEAK 29(13Q14.2) WILD-TYPE 568   5
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 29(13Q14.2) MUTATED    483    6
  DEL PEAK 29(13Q14.2) WILD-TYPE  568    5
        clus
vv       DEL PEAK 29(13Q14.2) MUTATED DEL PEAK 29(13Q14.2) WILD-TYPE
  FEMALE                          483                            568
  MALE                              6                              5
[1] 2 2
[1] FALSE
                                vv
clus                             INFILTRATING CARCINOMA NOS
  DEL PEAK 29(13Q14.2) MUTATED                            0
  DEL PEAK 29(13Q14.2) WILD-TYPE                          1
                                vv
clus                             INFILTRATING DUCTAL CARCINOMA
  DEL PEAK 29(13Q14.2) MUTATED                             386
  DEL PEAK 29(13Q14.2) WILD-TYPE                           377
                                vv
clus                             INFILTRATING LOBULAR CARCINOMA
  DEL PEAK 29(13Q14.2) MUTATED                               65
  DEL PEAK 29(13Q14.2) WILD-TYPE                            127
                                vv
clus                             MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  DEL PEAK 29(13Q14.2) MUTATED                     5                     1
  DEL PEAK 29(13Q14.2) WILD-TYPE                   1                     3
                                vv
clus                             MIXED HISTOLOGY (PLEASE SPECIFY)
  DEL PEAK 29(13Q14.2) MUTATED                                 12
  DEL PEAK 29(13Q14.2) WILD-TYPE                               18
                                vv
clus                             MUCINOUS CARCINOMA OTHER  SPECIFY
  DEL PEAK 29(13Q14.2) MUTATED                    2             17
  DEL PEAK 29(13Q14.2) WILD-TYPE                 15             31
D58V8, multiclass
                                  clus
vv                                 DEL PEAK 29(13Q14.2) MUTATED
  INFILTRATING CARCINOMA NOS                                  0
  INFILTRATING DUCTAL CARCINOMA                             386
  INFILTRATING LOBULAR CARCINOMA                             65
  MEDULLARY CARCINOMA                                         5
  METAPLASTIC CARCINOMA                                       1
  MIXED HISTOLOGY (PLEASE SPECIFY)                           12
  MUCINOUS CARCINOMA                                          2
  OTHER  SPECIFY                                             17
                                  clus
vv                                 DEL PEAK 29(13Q14.2) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                    1
  INFILTRATING DUCTAL CARCINOMA                               377
  INFILTRATING LOBULAR CARCINOMA                              127
  MEDULLARY CARCINOMA                                           1
  METAPLASTIC CARCINOMA                                         3
  MIXED HISTOLOGY (PLEASE SPECIFY)                             18
  MUCINOUS CARCINOMA                                           15
  OTHER  SPECIFY                                               31
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D58V9, binary
                                cls
clus                               0   1
  DEL PEAK 29(13Q14.2) MUTATED   143 346
  DEL PEAK 29(13Q14.2) WILD-TYPE 145 428
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 29(13Q14.2) MUTATED    143  346
  DEL PEAK 29(13Q14.2) WILD-TYPE  145  428
     clus
vv    DEL PEAK 29(13Q14.2) MUTATED DEL PEAK 29(13Q14.2) WILD-TYPE
  NO                           143                            145
  YES                          346                            428
[1] 2 2
[1] FALSE
D58V10, continuous
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 29(13Q14.2) MUTATED                                  0    28
  DEL PEAK 29(13Q14.2) WILD-TYPE                                1    32
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 29(13Q14.2) MUTATED                          90   318
  DEL PEAK 29(13Q14.2) WILD-TYPE                        80   418
D58V11, multiclass
                                  clus
vv                                 DEL PEAK 29(13Q14.2) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            0
  ASIAN                                                      28
  BLACK OR AFRICAN AMERICAN                                  90
  WHITE                                                     318
                                  clus
vv                                 DEL PEAK 29(13Q14.2) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              1
  ASIAN                                                        32
  BLACK OR AFRICAN AMERICAN                                    80
  WHITE                                                       418
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D58V12, binary
                                cls
clus                               0   1
  DEL PEAK 29(13Q14.2) MUTATED    12 387
  DEL PEAK 29(13Q14.2) WILD-TYPE  26 471
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 29(13Q14.2) MUTATED     12  387
  DEL PEAK 29(13Q14.2) WILD-TYPE   26  471
                        clus
vv                       DEL PEAK 29(13Q14.2) MUTATED
  HISPANIC OR LATINO                               12
  NOT HISPANIC OR LATINO                          387
                        clus
vv                       DEL PEAK 29(13Q14.2) WILD-TYPE
  HISPANIC OR LATINO                                 26
  NOT HISPANIC OR LATINO                            471
[1] 2 2
[1] FALSE

Clustering(59) Variable = DEL PEAK 30(14Q24.1) MUTATION ANALYSIS
D59V1, survival
                                sevent
clus2                              0   1
  DEL PEAK 30(14Q24.1) MUTATED   291  51
  DEL PEAK 30(14Q24.1) WILD-TYPE 625  77
  DEL PEAK 30(14Q24.1) MUTATED DEL PEAK 30(14Q24.1) WILD-TYPE 
                           342                            702 
  DEL PEAK 30(14Q24.1) MUTATED DEL PEAK 30(14Q24.1) WILD-TYPE 
                            51                             77 
$`DEL PEAK 30(14Q24.1) MUTATED`
TCGA-3C-AAAU TCGA-3C-AALJ TCGA-A1-A0SK TCGA-A1-A0SO TCGA-A1-A0SP TCGA-A2-A04P 
      129.14        42.81        31.79        28.01        19.20        18.02 
TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04W TCGA-A2-A0CM TCGA-A2-A0CU TCGA-A2-A0CW 
       73.84        87.25       101.98        24.79         5.19       107.93 
TCGA-A2-A0D0 TCGA-A2-A0D4 TCGA-A2-A0EQ TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EY 
       67.33        25.22        79.76        35.05        34.29        63.29 
TCGA-A2-A0SV TCGA-A2-A0SX TCGA-A2-A0T0 TCGA-A2-A0YE TCGA-A2-A0YJ TCGA-A2-A0YT 
       27.12        50.43        17.52        18.21        18.61        23.77 
TCGA-A2-A1FV TCGA-A2-A1G1 TCGA-A2-A25B TCGA-A2-A25E TCGA-A2-A3XS TCGA-A2-A3XT 
       23.47        19.20        42.44       105.34        33.93        83.01 
TCGA-A2-A3XU TCGA-A2-A3XW TCGA-A2-A3XX TCGA-A2-A3Y0 TCGA-A7-A0CE TCGA-A7-A0DA 
       29.98        49.48        47.31        38.37        35.31        35.67 
TCGA-A7-A13D TCGA-A7-A13E TCGA-A7-A13F TCGA-A7-A26G TCGA-A7-A26I TCGA-A7-A2KD 
       31.73        20.19        25.15        23.74        21.73        22.32 
TCGA-A7-A3J1 TCGA-A7-A4SB TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A5ZV TCGA-A7-A6VW 
       11.28        13.74        14.50        21.17        12.10         9.37 
TCGA-A7-A6VX TCGA-A7-A6VY TCGA-A8-A06Q TCGA-A8-A06T TCGA-A8-A06U TCGA-A8-A06X 
       10.42         8.75         1.02        53.06        29.03        31.00 
TCGA-A8-A06Z TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07L TCGA-A8-A07O TCGA-A8-A07R 
        1.02        18.97        18.97        32.05         9.99         8.98 
TCGA-A8-A07W TCGA-A8-A085 TCGA-A8-A08G TCGA-A8-A08L TCGA-A8-A08O TCGA-A8-A08P 
        9.99        36.95        19.96         9.99        31.00        31.00 
TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09D TCGA-A8-A09I TCGA-A8-A09K TCGA-A8-A09M 
        9.99         9.99        50.04        45.07        29.98        33.07 
TCGA-A8-A09N TCGA-A8-A09R TCGA-A8-A0A6 TCGA-A8-A0AB TCGA-AC-A23C TCGA-AC-A2BK 
        1.02         8.98        21.04        17.03         0.95        38.53 
TCGA-AC-A2BM TCGA-AC-A2QH TCGA-AC-A2QJ TCGA-AC-A3W5 TCGA-AC-A62X TCGA-AC-A6IW 
       99.35        33.04         2.27        16.57        13.71        13.58 
TCGA-AC-A7VB TCGA-AC-A7VC TCGA-AC-A8OQ TCGA-AN-A04C TCGA-AN-A04D TCGA-AN-A0AK 
        8.22         0.03         1.12         1.78         1.71         7.36 
TCGA-AN-A0AS TCGA-AN-A0FD TCGA-AN-A0FJ TCGA-AN-A0FT TCGA-AN-A0FX TCGA-AN-A0XN 
        0.33         6.44         7.96         7.04         0.33         0.33 
TCGA-AN-A0XT TCGA-AO-A03N TCGA-AO-A03P TCGA-AO-A03T TCGA-AO-A0J2 TCGA-AO-A0J4 
        0.33        66.77        95.70        47.87        32.78        52.18 
TCGA-AO-A0J6 TCGA-AO-A0JL TCGA-AO-A124 TCGA-AO-A129 TCGA-AO-A12F TCGA-AO-A1KQ 
       37.48        55.33       102.58       108.03        48.36        61.87 
TCGA-AO-A1KR TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A0Y5 TCGA-AQ-A54N 
       70.39        24.79        26.93       130.09         5.65         2.56 
TCGA-AQ-A54O TCGA-AQ-A7U7 TCGA-AR-A0TP TCGA-AR-A0TR TCGA-AR-A0TT TCGA-AR-A0TV 
       32.91        19.20       111.32         5.26        86.66        42.35 
TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A0U4 TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AJ 
       65.36       101.95        85.97        75.55        61.84        52.77 
TCGA-AR-A1AL TCGA-AR-A1AM TCGA-AR-A1AP TCGA-AR-A1AQ TCGA-AR-A1AU TCGA-AR-A1AX 
       48.82        76.11        39.98        43.07        76.21        62.14 
TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24K TCGA-AR-A24L TCGA-AR-A24Q TCGA-AR-A24V 
       33.73       160.90        50.89        94.22       104.28        85.35 
TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A251 TCGA-AR-A255 TCGA-AR-A256 TCGA-B6-A0I1 
       79.00        89.00        78.48        58.92        93.83        77.62 
TCGA-B6-A0I9 TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IO 
       12.13       112.37       176.98       126.12        84.59       110.14 
TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RL TCGA-B6-A0WS TCGA-B6-A0WW TCGA-B6-A0WX 
      140.88       211.56        81.17        97.48        18.35        21.47 
TCGA-B6-A0WY TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A1KN TCGA-BH-A0AU 
      113.79        43.59       101.52        73.51       139.17        24.53 
TCGA-BH-A0AV TCGA-BH-A0AW TCGA-BH-A0AZ TCGA-BH-A0B3 TCGA-BH-A0B5 TCGA-BH-A0B7 
       59.84        20.45        28.50        39.55        48.36        56.98 
TCGA-BH-A0B9 TCGA-BH-A0BF TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BP 
       51.68        25.71        24.85        21.70        44.05        48.69 
TCGA-BH-A0BR TCGA-BH-A0BW TCGA-BH-A0BZ TCGA-BH-A0C1 TCGA-BH-A0C7 TCGA-BH-A0DE 
       53.69        11.67        49.05        44.02        42.90        31.17 
TCGA-BH-A0E0 TCGA-BH-A0E2 TCGA-BH-A0E6 TCGA-BH-A0H7 TCGA-BH-A0HX TCGA-BH-A0RX 
        4.41        14.30         9.63        23.08        27.25         5.59 
TCGA-BH-A0WA TCGA-BH-A18F TCGA-BH-A18Q TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A18V 
       23.05         8.81        55.63         7.36        51.39        51.16 
TCGA-BH-A1EN TCGA-BH-A1EW TCGA-BH-A1EY TCGA-BH-A1F6 TCGA-BH-A1F8 TCGA-BH-A1FC 
       69.93        55.69        17.69        97.48        24.66       114.15 
TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FM TCGA-BH-A202 TCGA-BH-A204 TCGA-BH-A42T 
       33.17        74.73        45.63        26.14        83.31        10.52 
TCGA-BH-A5IZ TCGA-C8-A12L TCGA-C8-A12M TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A132 
       18.64        11.93        11.77        12.66        12.66         1.87 
TCGA-C8-A134 TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HK TCGA-C8-A1HM TCGA-C8-A1HN 
        1.12        10.92        11.34        12.03         2.30         3.25 
TCGA-C8-A26V TCGA-C8-A26Y TCGA-C8-A27B TCGA-C8-A8HP TCGA-C8-A9FZ TCGA-D8-A13Y 
        0.30         0.43         0.99        13.02        19.46        11.90 
TCGA-D8-A13Z TCGA-D8-A142 TCGA-D8-A147 TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JG 
       20.88        13.97        19.20        18.71        15.78        12.03 
TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JP TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XF 
       20.09        19.40        21.01        27.58        18.15        15.22 
TCGA-D8-A1XG TCGA-D8-A1XK TCGA-D8-A1XL TCGA-D8-A1XO TCGA-D8-A1XT TCGA-D8-A1XU 
       14.73        14.50        19.92        15.55         6.35        12.99 
TCGA-D8-A1XW TCGA-D8-A1XY TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A1Y3 TCGA-D8-A27F 
       12.66        16.54        15.32        15.52        14.14        16.04 
TCGA-D8-A27I TCGA-D8-A27M TCGA-D8-A27R TCGA-D8-A27T TCGA-E2-A108 TCGA-E2-A10A 
       14.43        13.48        10.09        13.08        27.52        40.41 
TCGA-E2-A10F TCGA-E2-A14R TCGA-E2-A14T TCGA-E2-A14V TCGA-E2-A14W TCGA-E2-A14Z 
       28.87        38.60        33.30        34.26        32.02        18.51 
TCGA-E2-A150 TCGA-E2-A155 TCGA-E2-A158 TCGA-E2-A159 TCGA-E2-A15A TCGA-E2-A15F 
       25.41        21.04        14.79        25.05        23.34        21.63 
TCGA-E2-A15M TCGA-E2-A15P TCGA-E2-A1AZ TCGA-E2-A1IE TCGA-E2-A1IH TCGA-E2-A1II 
       11.05        19.56        60.53        38.30        33.73        33.70 
TCGA-E2-A1L7 TCGA-E2-A1LA TCGA-E2-A1LE TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A56Z 
       27.42        24.59        28.90       106.75       102.61         8.28 
TCGA-E2-A573 TCGA-E2-A574 TCGA-E2-A9RU TCGA-E9-A1N6 TCGA-E9-A1N8 TCGA-E9-A1N9 
       34.92        26.56        12.85        13.48        12.00        13.12 
TCGA-E9-A1QZ TCGA-E9-A1R2 TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1R7 
       11.90        34.95         6.12         3.02         2.76        21.21 
TCGA-E9-A1RB TCGA-E9-A226 TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A22E TCGA-E9-A22G 
       32.09        34.13        39.09        22.75        12.89        23.51 
TCGA-E9-A244 TCGA-E9-A2JS TCGA-E9-A3HO TCGA-E9-A3QA TCGA-EW-A1IZ TCGA-EW-A1J6 
        0.69        29.72        26.07        30.18        18.21        28.77 
TCGA-EW-A1OV TCGA-EW-A1OW TCGA-EW-A1P4 TCGA-EW-A1P8 TCGA-EW-A1PF TCGA-EW-A1PH 
       25.94        22.82        29.82         7.86        14.43        19.96 
TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A423 TCGA-EW-A424 TCGA-GI-A2C9 
       55.00        52.73        25.91        10.16        23.51       109.87 
TCGA-GM-A2DC TCGA-GM-A2DH TCGA-GM-A2DK TCGA-GM-A3XL TCGA-GM-A5PX TCGA-HN-A2NL 
       83.34        72.10        86.96        69.30        18.12         2.60 
TCGA-JL-A3YX TCGA-LD-A7W5 TCGA-LL-A441 TCGA-LL-A5YP TCGA-LL-A7T0 TCGA-LL-A8F5 
       11.57         7.10        11.44        14.79        12.36        14.73 
TCGA-OL-A5D7 TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66I TCGA-OL-A66K TCGA-OL-A66N 
       58.52        22.32        20.38        23.47        41.92        26.04 
TCGA-OL-A6VO TCGA-OL-A6VR TCGA-PL-A8LX TCGA-S3-A6ZF TCGA-S3-AA0Z TCGA-S3-AA10 
       28.21        40.11         0.16        16.50        16.80        15.39 
TCGA-S3-AA17 TCGA-UL-AAZ6 TCGA-UU-A93S TCGA-WT-AB41 TCGA-XX-A899 TCGA-XX-A89A 
       13.94        17.03         3.81        52.96        15.35        16.04 

$`DEL PEAK 30(14Q24.1) WILD-TYPE`
TCGA-3C-AALI TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT0 TCGA-5L-AAT1 TCGA-5T-A9QA 
      131.67        40.14        11.44        48.56        48.36         9.96 
TCGA-A1-A0SB TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH 
        8.52        14.37        43.43        48.10        14.27        47.24 
TCGA-A1-A0SI TCGA-A1-A0SJ TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SQ TCGA-A2-A04N 
       20.88        13.68         7.96        39.32        18.21       104.81 
TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04V TCGA-A2-A04X TCGA-A2-A04Y TCGA-A2-A0CK 
       78.41       121.94        63.12        55.43        36.13       136.73 
TCGA-A2-A0CL TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CQ TCGA-A2-A0CR TCGA-A2-A0CS 
       99.12       114.81        92.48        88.60       107.93        75.55 
TCGA-A2-A0CT TCGA-A2-A0CV TCGA-A2-A0CX TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 
       75.25        98.99        56.81        34.55        33.76        61.58 
TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0ER TCGA-A2-A0ES 
      101.72       134.40        80.28       107.61        74.40        72.00 
TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SW 
       31.82        61.94        24.72        99.19        54.64        44.88 
TCGA-A2-A0SY TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T4 TCGA-A2-A0T5 
       44.28        17.13         8.38        49.84        20.52        17.46 
TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YF TCGA-A2-A0YG 
       18.90        20.75        32.55        25.28        50.47        21.90 
TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A0YM TCGA-A2-A1FW 
       21.67        49.48        19.33        48.46        31.73        17.36 
TCGA-A2-A1FX TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G4 TCGA-A2-A1G6 TCGA-A2-A259 
       60.72        22.45        20.25        19.56        16.47        52.47 
TCGA-A2-A25A TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD 
      107.70        17.19        18.15        10.59        20.88        39.65 
TCGA-A2-A3XV TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4RY 
       32.75        34.98        50.37         7.30        24.39        21.30 
TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CD TCGA-A7-A0CG 
       23.21        26.96        21.14        21.90        38.30        34.29 
TCGA-A7-A0CH TCGA-A7-A0CJ TCGA-A7-A0D9 TCGA-A7-A0DB TCGA-A7-A0DC TCGA-A7-A13G 
       35.47        30.61        37.45        33.11        29.79        23.61 
TCGA-A7-A13H TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26H TCGA-A7-A26J TCGA-A7-A3IY 
       29.56        31.36        24.26        23.80        20.61        11.34 
TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A426 TCGA-A7-A4SA 
       10.59        10.29        13.41        14.70        11.97        14.93 
TCGA-A7-A4SF TCGA-A7-A56D TCGA-A7-A5ZW TCGA-A7-A5ZX TCGA-A7-A6VV TCGA-A8-A06O 
       17.92        14.73        10.72        11.05        10.29        13.02 
TCGA-A8-A06P TCGA-A8-A06R TCGA-A8-A06Y TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A079 
       13.02        17.98        26.01        17.03        53.98         9.01 
TCGA-A8-A07B TCGA-A8-A07E TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07P TCGA-A8-A07S 
       43.00        19.99        14.01        12.00        10.98         7.99 
TCGA-A8-A07U TCGA-A8-A07Z TCGA-A8-A082 TCGA-A8-A084 TCGA-A8-A086 TCGA-A8-A08A 
       24.99        45.07        18.05        15.06        13.02         0.99 
TCGA-A8-A08B TCGA-A8-A08C TCGA-A8-A08F TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08R 
       38.01        28.96        33.01        12.00        37.05         0.99 
TCGA-A8-A08S TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A08Z TCGA-A8-A091 TCGA-A8-A092 
       33.01       112.08        43.00        40.01        33.01        30.97 
TCGA-A8-A093 TCGA-A8-A095 TCGA-A8-A097 TCGA-A8-A09B TCGA-A8-A09C TCGA-A8-A09E 
       17.95        41.98        12.00        12.00         1.02        49.05 
TCGA-A8-A09Q TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A09X TCGA-A8-A0A1 
       25.02        19.04        15.02         0.99        14.01        12.00 
TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A7 TCGA-A8-A0A9 TCGA-A8-A0AD TCGA-AC-A23E 
       19.04        13.02         0.99        27.02        38.04         2.37 
TCGA-AC-A23G TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2FB TCGA-AC-A2FF TCGA-AC-A2FG 
       10.85         5.72         1.48        40.57        55.43        36.99 
TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A2QI TCGA-AC-A3BB TCGA-AC-A3HN 
       38.79        26.04        50.70         0.92        32.45        16.31 
TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3TN TCGA-AC-A3W6 TCGA-AC-A3YI TCGA-AC-A3YJ 
       14.83        22.19        14.99        19.79        23.24        24.79 
TCGA-AC-A5XS TCGA-AC-A62V TCGA-AC-A62Y TCGA-AC-A6IV TCGA-AC-A6IX TCGA-AC-A6NO 
        1.55        11.44        17.42        18.67        12.26         1.68 
TCGA-AC-A8OP TCGA-AC-A8OR TCGA-AC-A8OS TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A041 
       20.19         1.32         2.30         0.33         0.33         0.23 
TCGA-AN-A046 TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A0AJ TCGA-AN-A0AL TCGA-AN-A0AM 
        0.33         0.62         2.96         9.96         6.51         0.16 
TCGA-AN-A0AR TCGA-AN-A0AT TCGA-AN-A0FF TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FN 
        0.33         0.33         5.65         7.00         7.59         7.17 
TCGA-AN-A0FS TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FY TCGA-AN-A0FZ TCGA-AN-A0XL 
        6.28         0.33         0.36         0.33         0.33         0.33 
TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS TCGA-AN-A0XU TCGA-AN-A0XV 
       12.33         0.30         0.33         0.33         0.33         5.33 
TCGA-AN-A0XW TCGA-AO-A03L TCGA-AO-A03M TCGA-AO-A03O TCGA-AO-A03R TCGA-AO-A03U 
        5.59        80.28        61.35        81.63        68.75        58.95 
TCGA-AO-A03V TCGA-AO-A0J3 TCGA-AO-A0J5 TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 
       29.13        21.40        26.04        20.32        22.36        53.03 
TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JC TCGA-AO-A0JD TCGA-AO-A0JE TCGA-AO-A0JF 
       21.53        50.70        50.86        72.00        76.77        21.37 
TCGA-AO-A0JG TCGA-AO-A0JI TCGA-AO-A0JJ TCGA-AO-A0JM TCGA-AO-A125 TCGA-AO-A126 
       26.24        50.24        62.04        71.80        99.25       108.72 
TCGA-AO-A128 TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A12E TCGA-AO-A12G 
      106.78        90.58        98.27        64.04        57.30        41.62 
TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KS TCGA-AO-A1KT TCGA-AQ-A1H2 
       28.37        14.73        82.62         0.53        17.79        15.62 
TCGA-AQ-A1H3 TCGA-AR-A0TQ TCGA-AR-A0TS TCGA-AR-A0TW TCGA-AR-A0TX TCGA-AR-A0TY 
       32.52        73.64        74.79        98.93        64.83        55.86 
TCGA-AR-A0TZ TCGA-AR-A0U2 TCGA-AR-A0U3 TCGA-AR-A1AK TCGA-AR-A1AN TCGA-AR-A1AO 
      107.24        83.87       114.02        51.25        43.73        43.56 
TCGA-AR-A1AR TCGA-AR-A1AS TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A24M TCGA-AR-A24N 
       17.23        37.81        61.28        63.62        96.89        78.51 
TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24R TCGA-AR-A24S TCGA-AR-A24T TCGA-AR-A24U 
       84.20         2.76        87.22        97.84        76.01        53.36 
TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A2LE TCGA-AR-A2LH 
       50.96        83.77        73.18        72.76       143.21        20.25 
TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LL TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO 
       62.86        54.21        66.15        52.11        38.17        39.39 
TCGA-AR-A2LQ TCGA-AR-A2LR TCGA-AR-A5QM TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ 
       40.54        20.38        54.74        16.04        20.45        10.59 
TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0IA TCGA-B6-A0IB TCGA-B6-A0IC TCGA-B6-A0IE 
      143.38       149.59       220.90       129.57        50.70        65.72 
TCGA-B6-A0IG TCGA-B6-A0IK TCGA-B6-A0IP TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RI 
      146.50        18.77       110.93        68.45       189.01       234.28 
TCGA-B6-A0RM TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RS 
       78.02       172.96       162.05       102.77       140.48       100.70 
TCGA-B6-A0RT TCGA-B6-A0RU TCGA-B6-A0RV TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0WZ 
       89.46       131.21       157.41       188.68        79.63       129.57 
TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A2IU 
      129.70       186.48        28.27        68.94        58.88       170.17 
TCGA-B6-A401 TCGA-B6-A402 TCGA-B6-A408 TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AY 
       85.35        74.99        68.12       103.63        71.15        25.55 
TCGA-BH-A0B0 TCGA-BH-A0B2 TCGA-BH-A0B4 TCGA-BH-A0B6 TCGA-BH-A0BA TCGA-BH-A0BC 
       46.95        40.83        39.16        56.94        37.22        32.02 
TCGA-BH-A0BD TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BQ TCGA-BH-A0BS TCGA-BH-A0BT 
       18.21        61.68        35.67        27.19        53.95        45.57 
TCGA-BH-A0BV TCGA-BH-A0C0 TCGA-BH-A0C3 TCGA-BH-A0DD TCGA-BH-A0DG TCGA-BH-A0DH 
       49.94        41.75        48.13        45.83        23.44        38.01 
TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DO TCGA-BH-A0DP TCGA-BH-A0DQ 
       22.13        13.91        48.23        17.26        15.65         3.22 
TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E1 
        2.56        38.47        67.86        47.41        16.27        15.68 
TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EA TCGA-BH-A0EB TCGA-BH-A0EE TCGA-BH-A0EI 
       44.81        46.19        32.58        24.49        31.00        24.43 
TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 
       30.35        10.78        15.16        37.78        35.51        24.56 
TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HO 
       41.00        52.96        26.50        20.38         5.85         2.50 
TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HY TCGA-BH-A0W3 
       13.61        36.85        12.89        51.32        50.79        23.93 
TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J 
       24.95        42.35        44.81         2.01         7.23        20.12 
TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18R 
       90.84        26.66        72.56        37.74        30.28        37.55 
TCGA-BH-A18S TCGA-BH-A1EO TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EV 
       66.05        91.99       113.82        82.85        42.28        12.00 
TCGA-BH-A1EX TCGA-BH-A1F0 TCGA-BH-A1F2 TCGA-BH-A1F5 TCGA-BH-A1FB TCGA-BH-A1FG 
       49.58        25.81        31.53        89.16       120.62       122.89 
TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FN TCGA-BH-A1FR TCGA-BH-A1FU 
       36.92        63.35        55.00        72.07       144.59        72.07 
TCGA-BH-A201 TCGA-BH-A203 TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A28Q 
       28.14        38.60        57.83       130.16        10.65         6.44 
TCGA-BH-A2L8 TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5J0 TCGA-BH-A6R8 TCGA-BH-A6R9 
       20.12       109.28         8.94        23.51         9.63         5.26 
TCGA-BH-A8FY TCGA-BH-A8FZ TCGA-BH-A8G0 TCGA-BH-AB28 TCGA-C8-A12N TCGA-C8-A12O 
        9.70        18.87        21.76         9.44        11.77        12.66 
TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12U TCGA-C8-A12V TCGA-C8-A12Z TCGA-C8-A130 
       11.77        12.66        12.66        12.66         0.39         3.16 
TCGA-C8-A131 TCGA-C8-A135 TCGA-C8-A137 TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HI 
        2.24         1.05         4.11         4.08        12.33        11.28 
TCGA-C8-A1HJ TCGA-C8-A1HL TCGA-C8-A26W TCGA-C8-A26X TCGA-C8-A26Z TCGA-C8-A273 
        0.16        10.42         0.23         0.36         8.28         9.67 
TCGA-C8-A274 TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A3M7 TCGA-C8-A3M8 
        9.53         0.03         9.50        12.20         0.03         0.23 
TCGA-C8-A8HQ TCGA-C8-A8HR TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A143 TCGA-D8-A145 
       12.49        13.41        13.25        20.58        14.17        13.48 
TCGA-D8-A146 TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JD TCGA-D8-A1JE 
       21.14        14.17        17.49        16.50        18.15        18.90 
TCGA-D8-A1JF TCGA-D8-A1JH TCGA-D8-A1JI TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JN 
       12.03        14.01        18.97        20.09        20.12        20.38 
TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X7 
       12.20        13.32        14.70        18.58        17.79        16.73 
TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XC TCGA-D8-A1XD TCGA-D8-A1XJ TCGA-D8-A1XM 
       25.74        23.90        12.39        17.16        21.83        17.69 
TCGA-D8-A1XQ TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XV TCGA-D8-A1Y1 TCGA-D8-A1Y2 
       16.41        15.85        16.31        15.16         9.93        14.24 
TCGA-D8-A27E TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27N 
       17.42        13.45        13.05         9.44        16.41         4.80 
TCGA-D8-A27P TCGA-D8-A27V TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 
        0.76        12.53        12.26        33.37        18.51        21.67 
TCGA-D8-A73U TCGA-D8-A73W TCGA-D8-A73X TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A109 
       16.18         8.02        12.10        43.00        34.42        46.59 
TCGA-E2-A10B TCGA-E2-A10C TCGA-E2-A10E TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P 
       37.51        40.11        28.44        47.15        44.68        40.96 
TCGA-E2-A14Q TCGA-E2-A14S TCGA-E2-A14U TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A152 
       38.24        33.17        43.33        31.96        28.60        27.12 
TCGA-E2-A153 TCGA-E2-A154 TCGA-E2-A156 TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15E 
       23.24        19.43        23.87        22.82        17.29        20.71 
TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L 
       18.21        12.92        17.42        19.40         9.04        20.58 
TCGA-E2-A15O TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1B0 TCGA-E2-A1B1 
       13.02        17.06        14.07        14.99        53.62        53.03 
TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BC TCGA-E2-A1BD TCGA-E2-A1IF 
       33.01        32.35        28.50        16.47        17.10        37.41 
TCGA-E2-A1IG TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IO 
       32.78        28.44        22.65         3.88        22.19        20.98 
TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L8 TCGA-E2-A1L9 TCGA-E2-A1LB TCGA-E2-A1LG 
       11.08        54.18        39.62        19.66        40.47        18.87 
TCGA-E2-A1LK TCGA-E2-A1LL TCGA-E2-A2P5 TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A570 
        8.75        43.04        16.93         5.52        15.72        30.61 
TCGA-E2-A576 TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1NA TCGA-E9-A1NC 
       34.29        34.82        32.88        36.82        36.56        39.55 
TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1NI TCGA-E9-A1R0 
       12.59        35.77        35.24        25.84         9.86        28.27 
TCGA-E9-A1R3 TCGA-E9-A1RA TCGA-E9-A1RC TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RF 
        2.56        32.09        40.24         1.12        34.65         6.58 
TCGA-E9-A1RG TCGA-E9-A1RH TCGA-E9-A1RI TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 
       21.27        34.59        35.64        32.05        12.53        13.32 
TCGA-E9-A22D TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A247 TCGA-E9-A248 TCGA-E9-A249 
       41.03        20.71        17.06        27.22         1.94         7.13 
TCGA-E9-A24A TCGA-E9-A295 TCGA-E9-A2JT TCGA-E9-A3Q9 TCGA-E9-A3X8 TCGA-E9-A54X 
       24.56         0.72         0.76        18.41        15.72        12.33 
TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UO TCGA-E9-A5UP TCGA-E9-A6HE 
       23.84        14.70         0.79        13.81        14.40        15.39 
TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1J3 
       12.20        39.72         8.48        18.90        13.25        16.57 
TCGA-EW-A1J5 TCGA-EW-A1OX TCGA-EW-A1OY TCGA-EW-A1OZ TCGA-EW-A1P0 TCGA-EW-A1P1 
       15.68        29.95        29.85        40.41        41.13        39.78 
TCGA-EW-A1P3 TCGA-EW-A1P5 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1PA TCGA-EW-A1PB 
       52.96        23.11        18.48        30.08        18.90        19.99 
TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PG TCGA-EW-A2FW TCGA-EW-A3E8 
        6.15        13.94        10.52        34.55        22.09        34.03 
TCGA-EW-A3U0 TCGA-GI-A2C8 TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DD 
       17.49         7.40        59.57       216.76        79.10        75.02 
TCGA-GM-A2DF TCGA-GM-A2DI TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A2DO 
       70.85        85.15       115.69       106.06       101.62        85.35 
TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV 
      110.50        38.20        43.73        66.38        72.03        13.55 
TCGA-HN-A2OB TCGA-JL-A3YW TCGA-LD-A66U TCGA-LD-A74U TCGA-LD-A7W6 TCGA-LD-A9QF 
       62.43        11.84        21.24        13.22        13.28        10.62 
TCGA-LL-A440 TCGA-LL-A442 TCGA-LL-A50Y TCGA-LL-A5YL TCGA-LL-A5YM TCGA-LL-A5YN 
       24.95        10.95        25.05        17.06        15.32        14.70 
TCGA-LL-A5YO TCGA-LL-A6FP TCGA-LL-A6FQ TCGA-LL-A6FR TCGA-LL-A73Y TCGA-LL-A73Z 
       14.47        22.26         2.63        16.08        15.68         7.46 
TCGA-LL-A740 TCGA-LL-A7SZ TCGA-LL-A9Q3 TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 
       14.50        14.70        14.07        27.91        22.39         2.10 
TCGA-OL-A5D6 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RU TCGA-OL-A5RV TCGA-OL-A5RW 
       36.30        31.99        58.62        40.08        34.92        36.36 
TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A66H TCGA-OL-A66J TCGA-OL-A66L TCGA-OL-A66O 
       28.87        24.72        26.70        65.62        42.77        17.36 
TCGA-OL-A66P TCGA-OL-A6VQ TCGA-OL-A97C TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE 
       14.07        19.73         8.91        47.01        64.21        86.96 
TCGA-PL-A8LY TCGA-PL-A8LZ TCGA-S3-A6ZG TCGA-S3-A6ZH TCGA-S3-AA11 TCGA-S3-AA12 
        0.26         9.93        13.12        16.93        13.84        15.35 
TCGA-S3-AA14 TCGA-S3-AA15 TCGA-W8-A86G TCGA-WT-AB44 TCGA-Z7-A8R5 TCGA-Z7-A8R6 
       14.96        13.84        11.41        29.03       108.07       107.05 

  DEL PEAK 30(14Q24.1) MUTATED DEL PEAK 30(14Q24.1) WILD-TYPE 
                          0.03                           0.03 
  DEL PEAK 30(14Q24.1) MUTATED DEL PEAK 30(14Q24.1) WILD-TYPE 
                        211.56                         234.28 
  DEL PEAK 30(14Q24.1) MUTATED DEL PEAK 30(14Q24.1) WILD-TYPE 
                        24.790                         24.325 
[1] "0.0 - 211.6 (24.8)" "0.0 - 234.3 (24.3)"
[1] "hr=" "1.4"
D59V2, continuous
                                vv
clus                             STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  DEL PEAK 30(14Q24.1) MUTATED        22       23        0        1       118
  DEL PEAK 30(14Q24.1) WILD-TYPE      67       58        8        2       235
                                vv
clus                             STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  DEL PEAK 30(14Q24.1) MUTATED          90         0         51          7
  DEL PEAK 30(14Q24.1) WILD-TYPE       155         2         99         22
                                vv
clus                             STAGE IIIC STAGE IV STAGE TIS STAGE X
  DEL PEAK 30(14Q24.1) MUTATED           17        7         0       7
  DEL PEAK 30(14Q24.1) WILD-TYPE         46       13         1       6
D59V3, multiclass
            clus
vv           DEL PEAK 30(14Q24.1) MUTATED DEL PEAK 30(14Q24.1) WILD-TYPE
  STAGE I                              22                             67
  STAGE IA                             23                             58
  STAGE IB                              0                              8
  STAGE II                              1                              2
  STAGE IIA                           118                            235
  STAGE IIB                            90                            155
  STAGE III                             0                              2
  STAGE IIIA                           51                             99
  STAGE IIIB                            7                             22
  STAGE IIIC                           17                             46
  STAGE IV                              7                             13
  STAGE TIS                             0                              1
  STAGE X                               7                              6
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              T1  T2  T3  T4
  DEL PEAK 30(14Q24.1) MUTATED    65 233  35  11
  DEL PEAK 30(14Q24.1) WILD-TYPE 207 383  95  29
D59V4, multiclass
    clus
vv   DEL PEAK 30(14Q24.1) MUTATED DEL PEAK 30(14Q24.1) WILD-TYPE
  T1                           65                            207
  T2                          233                            383
  T3                           35                             95
  T4                           11                             29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              N0  N1  N2  N3
  DEL PEAK 30(14Q24.1) MUTATED   166 109  44  20
  DEL PEAK 30(14Q24.1) WILD-TYPE 335 241  73  55
D59V5, multiclass
    clus
vv   DEL PEAK 30(14Q24.1) MUTATED DEL PEAK 30(14Q24.1) WILD-TYPE
  N0                          166                            335
  N1                          109                            241
  N2                           44                             73
  N3                           20                             55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D59V6, binary
                                cls
clus                               0   1
  DEL PEAK 30(14Q24.1) MUTATED   283   7
  DEL PEAK 30(14Q24.1) WILD-TYPE 596  14
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 30(14Q24.1) MUTATED    283    7
  DEL PEAK 30(14Q24.1) WILD-TYPE  596   14
   clus
vv  DEL PEAK 30(14Q24.1) MUTATED DEL PEAK 30(14Q24.1) WILD-TYPE
  0                          283                            596
  1                            7                             14
[1] 2 2
[1] FALSE
D59V7, binary
                                cls
clus                               0   1
  DEL PEAK 30(14Q24.1) MUTATED   342   4
  DEL PEAK 30(14Q24.1) WILD-TYPE 709   7
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 30(14Q24.1) MUTATED    342    4
  DEL PEAK 30(14Q24.1) WILD-TYPE  709    7
        clus
vv       DEL PEAK 30(14Q24.1) MUTATED DEL PEAK 30(14Q24.1) WILD-TYPE
  FEMALE                          342                            709
  MALE                              4                              7
[1] 2 2
[1] FALSE
                                vv
clus                             INFILTRATING CARCINOMA NOS
  DEL PEAK 30(14Q24.1) MUTATED                            1
  DEL PEAK 30(14Q24.1) WILD-TYPE                          0
                                vv
clus                             INFILTRATING DUCTAL CARCINOMA
  DEL PEAK 30(14Q24.1) MUTATED                             292
  DEL PEAK 30(14Q24.1) WILD-TYPE                           471
                                vv
clus                             INFILTRATING LOBULAR CARCINOMA
  DEL PEAK 30(14Q24.1) MUTATED                               31
  DEL PEAK 30(14Q24.1) WILD-TYPE                            161
                                vv
clus                             MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  DEL PEAK 30(14Q24.1) MUTATED                     4                     2
  DEL PEAK 30(14Q24.1) WILD-TYPE                   2                     2
                                vv
clus                             MIXED HISTOLOGY (PLEASE SPECIFY)
  DEL PEAK 30(14Q24.1) MUTATED                                  3
  DEL PEAK 30(14Q24.1) WILD-TYPE                               27
                                vv
clus                             MUCINOUS CARCINOMA OTHER  SPECIFY
  DEL PEAK 30(14Q24.1) MUTATED                    1             11
  DEL PEAK 30(14Q24.1) WILD-TYPE                 16             37
D59V8, multiclass
                                  clus
vv                                 DEL PEAK 30(14Q24.1) MUTATED
  INFILTRATING CARCINOMA NOS                                  1
  INFILTRATING DUCTAL CARCINOMA                             292
  INFILTRATING LOBULAR CARCINOMA                             31
  MEDULLARY CARCINOMA                                         4
  METAPLASTIC CARCINOMA                                       2
  MIXED HISTOLOGY (PLEASE SPECIFY)                            3
  MUCINOUS CARCINOMA                                          1
  OTHER  SPECIFY                                             11
                                  clus
vv                                 DEL PEAK 30(14Q24.1) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                    0
  INFILTRATING DUCTAL CARCINOMA                               471
  INFILTRATING LOBULAR CARCINOMA                              161
  MEDULLARY CARCINOMA                                           2
  METAPLASTIC CARCINOMA                                         2
  MIXED HISTOLOGY (PLEASE SPECIFY)                             27
  MUCINOUS CARCINOMA                                           16
  OTHER  SPECIFY                                               37
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D59V9, binary
                                cls
clus                               0   1
  DEL PEAK 30(14Q24.1) MUTATED   107 239
  DEL PEAK 30(14Q24.1) WILD-TYPE 181 535
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 30(14Q24.1) MUTATED    107  239
  DEL PEAK 30(14Q24.1) WILD-TYPE  181  535
     clus
vv    DEL PEAK 30(14Q24.1) MUTATED DEL PEAK 30(14Q24.1) WILD-TYPE
  NO                           107                            181
  YES                          239                            535
[1] 2 2
[1] FALSE
D59V10, continuous
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 30(14Q24.1) MUTATED                                  0    18
  DEL PEAK 30(14Q24.1) WILD-TYPE                                1    42
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 30(14Q24.1) MUTATED                          77   218
  DEL PEAK 30(14Q24.1) WILD-TYPE                        93   518
D59V11, multiclass
                                  clus
vv                                 DEL PEAK 30(14Q24.1) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            0
  ASIAN                                                      18
  BLACK OR AFRICAN AMERICAN                                  77
  WHITE                                                     218
                                  clus
vv                                 DEL PEAK 30(14Q24.1) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              1
  ASIAN                                                        42
  BLACK OR AFRICAN AMERICAN                                    93
  WHITE                                                       518
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D59V12, binary
                                cls
clus                               0   1
  DEL PEAK 30(14Q24.1) MUTATED    11 281
  DEL PEAK 30(14Q24.1) WILD-TYPE  27 577
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 30(14Q24.1) MUTATED     11  281
  DEL PEAK 30(14Q24.1) WILD-TYPE   27  577
                        clus
vv                       DEL PEAK 30(14Q24.1) MUTATED
  HISPANIC OR LATINO                               11
  NOT HISPANIC OR LATINO                          281
                        clus
vv                       DEL PEAK 30(14Q24.1) WILD-TYPE
  HISPANIC OR LATINO                                 27
  NOT HISPANIC OR LATINO                            577
[1] 2 2
[1] FALSE

Clustering(60) Variable = DEL PEAK 31(15Q13.1) MUTATION ANALYSIS
D60V1, survival
                                sevent
clus2                              0   1
  DEL PEAK 31(15Q13.1) MUTATED   317  47
  DEL PEAK 31(15Q13.1) WILD-TYPE 599  81
  DEL PEAK 31(15Q13.1) MUTATED DEL PEAK 31(15Q13.1) WILD-TYPE 
                           364                            680 
  DEL PEAK 31(15Q13.1) MUTATED DEL PEAK 31(15Q13.1) WILD-TYPE 
                            47                             81 
$`DEL PEAK 31(15Q13.1) MUTATED`
TCGA-3C-AALI TCGA-3C-AALJ TCGA-A1-A0SF TCGA-A1-A0SI TCGA-A1-A0SK TCGA-A1-A0SO 
      131.67        42.81        48.10        20.88        31.79        28.01 
TCGA-A1-A0SP TCGA-A2-A04P TCGA-A2-A04Q TCGA-A2-A04U TCGA-A2-A04W TCGA-A2-A0CL 
       19.20        18.02        78.41        87.25       101.98        99.12 
TCGA-A2-A0CM TCGA-A2-A0CS TCGA-A2-A0CT TCGA-A2-A0CW TCGA-A2-A0CX TCGA-A2-A0D0 
       24.79        75.55        75.25       107.93        56.81        67.33 
TCGA-A2-A0D4 TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EQ TCGA-A2-A0ET TCGA-A2-A0EY 
       25.22       134.40        80.28        79.76        35.05        63.29 
TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0T3 TCGA-A2-A0T7 TCGA-A2-A0YE 
       54.64        27.12        44.88        49.84        20.75        18.21 
TCGA-A2-A0YJ TCGA-A2-A0YM TCGA-A2-A1G1 TCGA-A2-A25B TCGA-A2-A3XS TCGA-A2-A3XU 
       18.61        31.73        19.20        42.44        33.93        29.98 
TCGA-A2-A3XX TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4S3 TCGA-A7-A0CE TCGA-A7-A0D9 
       47.31        38.37         7.30        21.90        35.31        37.45 
TCGA-A7-A0DA TCGA-A7-A0DC TCGA-A7-A13D TCGA-A7-A13E TCGA-A7-A13H TCGA-A7-A26E 
       35.67        29.79        31.73        20.19        29.56        31.36 
TCGA-A7-A26I TCGA-A7-A2KD TCGA-A7-A3J1 TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A56D 
       21.73        22.32        11.28        14.50        21.17        14.73 
TCGA-A7-A5ZV TCGA-A7-A6VV TCGA-A7-A6VW TCGA-A8-A06R TCGA-A8-A06X TCGA-A8-A06Y 
       12.10        10.29         9.37        17.98        31.00        26.01 
TCGA-A8-A06Z TCGA-A8-A076 TCGA-A8-A07B TCGA-A8-A07F TCGA-A8-A07L TCGA-A8-A07R 
        1.02        53.98        43.00        18.97        32.05         8.98 
TCGA-A8-A07U TCGA-A8-A084 TCGA-A8-A08G TCGA-A8-A08I TCGA-A8-A08L TCGA-A8-A08O 
       24.99        15.06        19.96        12.00         9.99        31.00 
TCGA-A8-A08X TCGA-A8-A092 TCGA-A8-A093 TCGA-A8-A09A TCGA-A8-A09C TCGA-A8-A09M 
       43.00        30.97        17.95         9.99         1.02        33.07 
TCGA-A8-A09N TCGA-A8-A0A7 TCGA-A8-A0AB TCGA-AC-A23E TCGA-AC-A2BK TCGA-AC-A2BM 
        1.02         0.99        17.03         2.37        38.53        99.35 
TCGA-AC-A2FM TCGA-AC-A2QJ TCGA-AC-A3OD TCGA-AC-A62X TCGA-AC-A6IW TCGA-AC-A8OP 
       26.04         2.27        14.83        13.71        13.58        20.19 
TCGA-AC-A8OQ TCGA-AN-A04A TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AK TCGA-AN-A0AR 
        1.12         2.96         1.71         9.96         7.36         0.33 
TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FT TCGA-AN-A0FV 
        0.33         6.44         7.96         7.00         7.04         0.33 
TCGA-AN-A0FW TCGA-AN-A0FX TCGA-AN-A0FY TCGA-AN-A0FZ TCGA-AN-A0XN TCGA-AN-A0XO 
        0.36         0.33         0.33         0.33         0.33        12.33 
TCGA-AN-A0XS TCGA-AO-A03L TCGA-AO-A03M TCGA-AO-A03P TCGA-AO-A03V TCGA-AO-A0J6 
        0.33        80.28        61.35        95.70        29.13        37.48 
TCGA-AO-A0J7 TCGA-AO-A0J9 TCGA-AO-A0JB TCGA-AO-A0JD TCGA-AO-A0JL TCGA-AO-A124 
       20.32        53.03        50.70        72.00        55.33       102.58 
TCGA-AO-A129 TCGA-AO-A12D TCGA-AO-A1KQ TCGA-AO-A1KS TCGA-AO-A1KT TCGA-AQ-A04H 
      108.03        64.04        61.87         0.53        17.79        24.79 
TCGA-AQ-A04J TCGA-AQ-A54N TCGA-AQ-A54O TCGA-AR-A0TR TCGA-AR-A0TS TCGA-AR-A0TT 
       26.93         2.56        32.91         5.26        74.79        86.66 
TCGA-AR-A0TV TCGA-AR-A0TW TCGA-AR-A0TX TCGA-AR-A0TY TCGA-AR-A0U1 TCGA-AR-A0U4 
       42.35        98.93        64.83        55.86       101.95        85.97 
TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AN TCGA-AR-A1AQ TCGA-AR-A1AR 
       75.55        61.84        52.77        43.73        43.07        17.23 
TCGA-AR-A1AW TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24R TCGA-AR-A24S TCGA-AR-A24V 
       63.62        33.73       160.90        87.22        97.84        85.35 
TCGA-AR-A24W TCGA-AR-A24Z TCGA-AR-A251 TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LK 
       50.96        79.00        78.48        58.92        93.83        54.21 
TCGA-AR-A2LR TCGA-B6-A0I1 TCGA-B6-A0IB TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IQ 
       20.38        77.62       129.57       112.37       176.98       140.88 
TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RO TCGA-B6-A0RP TCGA-B6-A0RS TCGA-B6-A0RU 
      211.56        68.45       162.05       102.77       100.70       131.21 
TCGA-B6-A0WV TCGA-B6-A0WY TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A402 
       79.63       113.79        43.59       101.52        73.51        74.99 
TCGA-B6-A40C TCGA-BH-A0AU TCGA-BH-A0AV TCGA-BH-A0B2 TCGA-BH-A0B5 TCGA-BH-A0B6 
       71.15        24.53        59.84        40.83        48.36        56.94 
TCGA-BH-A0B9 TCGA-BH-A0BA TCGA-BH-A0BP TCGA-BH-A0BT TCGA-BH-A0BW TCGA-BH-A0BZ 
       51.68        37.22        48.69        45.57        11.67        49.05 
TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0C7 TCGA-BH-A0DP TCGA-BH-A0DX TCGA-BH-A0E0 
       41.75        44.02        42.90        15.65        47.41         4.41 
TCGA-BH-A0E6 TCGA-BH-A0EB TCGA-BH-A0H7 TCGA-BH-A0H9 TCGA-BH-A0HB TCGA-BH-A0HP 
        9.63        24.49        23.08        41.00        26.50        13.61 
TCGA-BH-A0HU TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0RX TCGA-BH-A0W7 TCGA-BH-A0WA 
       12.89        27.25        50.79         5.59        44.81        23.05 
TCGA-BH-A18F TCGA-BH-A18J TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18Q TCGA-BH-A18T 
        8.81        20.12        90.84        26.66        55.63         7.36 
TCGA-BH-A18U TCGA-BH-A1EN TCGA-BH-A1EO TCGA-BH-A1ES TCGA-BH-A1EV TCGA-BH-A1F2 
       51.39        69.93        91.99       113.82        12.00        31.53 
TCGA-BH-A1F6 TCGA-BH-A1FC TCGA-BH-A1FH TCGA-BH-A1FM TCGA-BH-A203 TCGA-BH-A208 
       97.48       114.15        36.92        45.63        38.60        57.83 
TCGA-BH-A5IZ TCGA-C8-A12L TCGA-C8-A12P TCGA-C8-A12U TCGA-C8-A12X TCGA-C8-A130 
       18.64        11.93        11.77        12.66        12.66         3.16 
TCGA-C8-A134 TCGA-C8-A135 TCGA-C8-A138 TCGA-C8-A1HF TCGA-C8-A1HJ TCGA-C8-A1HK 
        1.12         1.05         4.08        10.92         0.16        12.03 
TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A26Y TCGA-C8-A274 TCGA-C8-A278 TCGA-D8-A13Z 
        2.30         3.25         0.43         9.53         9.50        20.88 
TCGA-D8-A142 TCGA-D8-A146 TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JE TCGA-D8-A1JF 
       13.97        21.14        14.17        17.49        18.90        12.03 
TCGA-D8-A1JG TCGA-D8-A1JP TCGA-D8-A1XB TCGA-D8-A1XF TCGA-D8-A1XK TCGA-D8-A1XL 
       12.03        21.01        18.15        15.22        14.50        19.92 
TCGA-D8-A1XO TCGA-D8-A1XQ TCGA-D8-A1XS TCGA-D8-A1XU TCGA-D8-A1XY TCGA-D8-A1XZ 
       15.55        16.41        16.31        12.99        16.54        15.32 
TCGA-D8-A1Y1 TCGA-D8-A27F TCGA-D8-A27M TCGA-D8-A73U TCGA-D8-A73X TCGA-E2-A109 
        9.93        16.04        13.48        16.18        12.10        46.59 
TCGA-E2-A10C TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14R TCGA-E2-A14V 
       40.11        28.87        47.15        44.68        38.60        34.26 
TCGA-E2-A14W TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A154 TCGA-E2-A159 TCGA-E2-A15G 
       32.02        25.41        27.12        19.43        25.05        18.21 
TCGA-E2-A15H TCGA-E2-A1AZ TCGA-E2-A1B6 TCGA-E2-A1BD TCGA-E2-A1IF TCGA-E2-A1II 
       12.92        60.53        28.50        17.10        37.41        33.70 
TCGA-E2-A1IO TCGA-E2-A1L7 TCGA-E2-A1L8 TCGA-E2-A1LB TCGA-E2-A1LH TCGA-E2-A1LI 
       20.98        27.42        39.62        40.47       106.75       102.61 
TCGA-E2-A1LK TCGA-E2-A2P5 TCGA-E2-A573 TCGA-E2-A574 TCGA-E2-A576 TCGA-E9-A1N6 
        8.75        16.93        34.92        26.56        34.29        13.48 
TCGA-E9-A1N8 TCGA-E9-A1N9 TCGA-E9-A1NA TCGA-E9-A1ND TCGA-E9-A1NI TCGA-E9-A1R4 
       12.00        13.12        36.56        12.59         9.86         6.12 
TCGA-E9-A1RC TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RG TCGA-E9-A1RH TCGA-E9-A1RI 
       40.24        34.65         6.58        21.27        34.59        35.64 
TCGA-E9-A226 TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A244 TCGA-E9-A247 
       34.13        41.03        12.89        23.51         0.69        27.22 
TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A295 TCGA-E9-A3HO TCGA-E9-A3QA TCGA-E9-A3X8 
        1.94         7.13         0.72        26.07        30.18        15.72 
TCGA-E9-A5FL TCGA-E9-A5UP TCGA-EW-A1J6 TCGA-EW-A1OV TCGA-EW-A1OW TCGA-EW-A1OZ 
        0.79        14.40        28.77        25.94        22.82        40.41 
TCGA-EW-A1P4 TCGA-EW-A1P8 TCGA-EW-A1PC TCGA-EW-A1PH TCGA-EW-A2FR TCGA-EW-A2FS 
       29.82         7.86         6.15        19.96        55.00        52.73 
TCGA-EW-A2FV TCGA-EW-A3E8 TCGA-EW-A3U0 TCGA-EW-A423 TCGA-EW-A424 TCGA-GI-A2C9 
       25.91        34.03        17.49        10.16        23.51       109.87 
TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A3XL TCGA-HN-A2NL TCGA-JL-A3YX TCGA-LL-A441 
       70.85        72.10        69.30         2.60        11.57        11.44 
TCGA-LL-A5YN TCGA-LL-A5YP TCGA-LL-A6FP TCGA-LL-A6FQ TCGA-LL-A6FR TCGA-LL-A8F5 
       14.70        14.79        22.26         2.63        16.08        14.73 
TCGA-OL-A5D7 TCGA-OL-A5S0 TCGA-OL-A66I TCGA-OL-A66K TCGA-OL-A6VO TCGA-OL-A97C 
       58.52        20.38        23.47        41.92        28.21         8.91 
TCGA-PE-A5DD TCGA-S3-A6ZF TCGA-S3-A6ZG TCGA-S3-AA10 TCGA-S3-AA17 TCGA-UL-AAZ6 
       64.21        16.50        13.12        15.39        13.94        17.03 
TCGA-UU-A93S TCGA-W8-A86G TCGA-WT-AB44 TCGA-Z7-A8R5 
        3.81        11.41        29.03       108.07 

$`DEL PEAK 31(15Q13.1) WILD-TYPE`
TCGA-3C-AAAU TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT0 TCGA-5L-AAT1 TCGA-5T-A9QA 
      129.14        40.14        11.44        48.56        48.36         9.96 
TCGA-A1-A0SB TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SJ 
        8.52        14.37        43.43        14.27        47.24        13.68 
TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04R TCGA-A2-A04T 
        7.96        39.32        18.21       104.81       121.94        73.84 
TCGA-A2-A04V TCGA-A2-A04X TCGA-A2-A04Y TCGA-A2-A0CK TCGA-A2-A0CO TCGA-A2-A0CP 
       63.12        55.43        36.13       136.73       114.81        92.48 
TCGA-A2-A0CQ TCGA-A2-A0CR TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0D1 TCGA-A2-A0D2 
       88.60       107.93         5.19        98.99        34.55        33.76 
TCGA-A2-A0D3 TCGA-A2-A0EM TCGA-A2-A0EP TCGA-A2-A0ER TCGA-A2-A0ES TCGA-A2-A0EU 
       61.58       101.72       107.61        74.40        72.00        34.29 
TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0ST TCGA-A2-A0SX TCGA-A2-A0SY 
       31.82        61.94        24.72        99.19        50.43        44.28 
TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T4 TCGA-A2-A0T5 TCGA-A2-A0T6 
       17.52        17.13         8.38        20.52        17.46        18.90 
TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YF TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A0YI 
       32.55        25.28        50.47        21.90        21.67        49.48 
TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1FX 
       19.33        48.46        23.77        23.47        17.36        60.72 
TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G4 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25A 
       22.45        20.25        19.56        16.47        52.47       107.70 
TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD 
       17.19        18.15       105.34        10.59        20.88        39.65 
TCGA-A2-A3XT TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A4RX 
       83.01        32.75        49.48        34.98        50.37        24.39 
TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A7-A0CD TCGA-A7-A0CG 
       21.30        23.21        26.96        21.14        38.30        34.29 
TCGA-A7-A0CH TCGA-A7-A0CJ TCGA-A7-A0DB TCGA-A7-A13F TCGA-A7-A13G TCGA-A7-A26F 
       35.47        30.61        33.11        25.15        23.61        24.26 
TCGA-A7-A26G TCGA-A7-A26H TCGA-A7-A26J TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J0 
       23.74        23.80        20.61        11.34        10.59        10.29 
TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A426 TCGA-A7-A4SA TCGA-A7-A4SB TCGA-A7-A4SF 
       13.41        14.70        11.97        14.93        13.74        17.92 
TCGA-A7-A5ZW TCGA-A7-A5ZX TCGA-A7-A6VX TCGA-A7-A6VY TCGA-A8-A06O TCGA-A8-A06P 
       10.72        11.05        10.42         8.75        13.02        13.02 
TCGA-A8-A06Q TCGA-A8-A06T TCGA-A8-A06U TCGA-A8-A075 TCGA-A8-A079 TCGA-A8-A07E 
        1.02        53.06        29.03        17.03         9.01        19.99 
TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07O TCGA-A8-A07P TCGA-A8-A07S 
       18.97        14.01        12.00         9.99        10.98         7.99 
TCGA-A8-A07W TCGA-A8-A07Z TCGA-A8-A082 TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A 
        9.99        45.07        18.05        36.95        13.02         0.99 
TCGA-A8-A08B TCGA-A8-A08C TCGA-A8-A08F TCGA-A8-A08J TCGA-A8-A08P TCGA-A8-A08R 
       38.01        28.96        33.01        37.05        31.00         0.99 
TCGA-A8-A08S TCGA-A8-A08T TCGA-A8-A08Z TCGA-A8-A091 TCGA-A8-A095 TCGA-A8-A097 
       33.01       112.08        40.01        33.01        41.98        12.00 
TCGA-A8-A099 TCGA-A8-A09B TCGA-A8-A09D TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K 
        9.99        12.00        50.04        49.05        45.07        29.98 
TCGA-A8-A09Q TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A09X 
       25.02         8.98        19.04        15.02         0.99        14.01 
TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A9 TCGA-A8-A0AD 
       12.00        19.04        13.02        21.04        27.02        38.04 
TCGA-AC-A23C TCGA-AC-A23G TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2FB TCGA-AC-A2FF 
        0.95        10.85         5.72         1.48        40.57        55.43 
TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FO TCGA-AC-A2QH TCGA-AC-A2QI TCGA-AC-A3BB 
       36.99        38.79        50.70        33.04         0.92        32.45 
TCGA-AC-A3HN TCGA-AC-A3QP TCGA-AC-A3TN TCGA-AC-A3W5 TCGA-AC-A3W6 TCGA-AC-A3YI 
       16.31        22.19        14.99        16.57        19.79        23.24 
TCGA-AC-A3YJ TCGA-AC-A5XS TCGA-AC-A62V TCGA-AC-A62Y TCGA-AC-A6IV TCGA-AC-A6IX 
       24.79         1.55        11.44        17.42        18.67        12.26 
TCGA-AC-A6NO TCGA-AC-A7VB TCGA-AC-A7VC TCGA-AC-A8OR TCGA-AC-A8OS TCGA-AN-A03X 
        1.68         8.22         0.03         1.32         2.30         0.33 
TCGA-AN-A03Y TCGA-AN-A041 TCGA-AN-A046 TCGA-AN-A049 TCGA-AN-A04C TCGA-AN-A0AL 
        0.33         0.23         0.33         0.62         1.78         6.51 
TCGA-AN-A0AM TCGA-AN-A0AS TCGA-AN-A0FF TCGA-AN-A0FL TCGA-AN-A0FN TCGA-AN-A0FS 
        0.16         0.33         5.65         7.59         7.17         6.28 
TCGA-AN-A0XL TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AN-A0XV 
        0.33         0.30         0.33         0.33         0.33         5.33 
TCGA-AN-A0XW TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03U 
        5.59        66.77        81.63        68.75        47.87        58.95 
TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J4 TCGA-AO-A0J5 TCGA-AO-A0J8 TCGA-AO-A0JA 
       32.78        21.40        52.18        26.04        22.36        21.53 
TCGA-AO-A0JC TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JG TCGA-AO-A0JI TCGA-AO-A0JJ 
       50.86        76.77        21.37        26.24        50.24        62.04 
TCGA-AO-A0JM TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 TCGA-AO-A12A TCGA-AO-A12B 
       71.80        99.25       108.72       106.78        90.58        98.27 
TCGA-AO-A12E TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP 
       57.30        48.36        41.62        28.37        14.73        82.62 
TCGA-AO-A1KR TCGA-AQ-A04L TCGA-AQ-A0Y5 TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AQ-A7U7 
       70.39       130.09         5.65        15.62        32.52        19.20 
TCGA-AR-A0TP TCGA-AR-A0TQ TCGA-AR-A0TZ TCGA-AR-A0U0 TCGA-AR-A0U2 TCGA-AR-A0U3 
      111.32        73.64       107.24        65.36        83.87       114.02 
TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AM TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AS 
       51.25        48.82        76.11        43.56        39.98        37.81 
TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A1AX TCGA-AR-A24K TCGA-AR-A24L TCGA-AR-A24M 
       76.21        61.28        62.14        50.89        94.22        96.89 
TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24Q TCGA-AR-A24T TCGA-AR-A24U 
       78.51        84.20         2.76       104.28        76.01        53.36 
TCGA-AR-A24X TCGA-AR-A250 TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A2LE TCGA-AR-A2LH 
       83.77        89.00        73.18        72.76       143.21        20.25 
TCGA-AR-A2LJ TCGA-AR-A2LL TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ 
       62.86        66.15        52.11        38.17        39.39        40.54 
TCGA-AR-A5QM TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I2 TCGA-B6-A0I5 
       54.74        16.04        20.45        10.59       143.38       149.59 
TCGA-B6-A0I9 TCGA-B6-A0IA TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IK 
       12.13       220.90        50.70        65.72       146.50        18.77 
TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IO TCGA-B6-A0IP TCGA-B6-A0RH TCGA-B6-A0RI 
      126.12        84.59       110.14       110.93       189.01       234.28 
TCGA-B6-A0RL TCGA-B6-A0RM TCGA-B6-A0RN TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RV 
       81.17        78.02       172.96       140.48        89.46       157.41 
TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WZ TCGA-B6-A0X0 
       97.48       188.68        18.35        21.47       129.57       129.70 
TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KN TCGA-B6-A2IU 
      186.48        28.27        68.94        58.88       139.17       170.17 
TCGA-B6-A401 TCGA-B6-A408 TCGA-B6-A40B TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0AZ 
       85.35        68.12       103.63        20.45        25.55        28.50 
TCGA-BH-A0B0 TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B7 TCGA-BH-A0BC TCGA-BH-A0BD 
       46.95        39.55        39.16        56.98        32.02        18.21 
TCGA-BH-A0BF TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BM TCGA-BH-A0BO 
       25.71        24.85        21.70        44.05        61.68        35.67 
TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BV TCGA-BH-A0C3 TCGA-BH-A0DD 
       27.19        53.69        53.95        49.94        48.13        45.83 
TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL 
       31.17        23.44        38.01        22.13        13.91        48.23 
TCGA-BH-A0DO TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DZ 
       17.26         3.22         2.56        38.47        67.86        16.27 
TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EA TCGA-BH-A0EE 
       15.68        14.30        44.81        46.19        32.58        31.00 
TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 
       24.43        30.35        10.78        15.16        37.78        35.51 
TCGA-BH-A0H6 TCGA-BH-A0HA TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HO TCGA-BH-A0HQ 
       24.56        52.96        20.38         5.85         2.50        36.85 
TCGA-BH-A0HW TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A18G TCGA-BH-A18I 
       51.32        23.93        24.95        42.35         2.01         7.23 
TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18R TCGA-BH-A18S TCGA-BH-A18V 
       72.56        37.74        30.28        37.55        66.05        51.16 
TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EW TCGA-BH-A1EX TCGA-BH-A1EY TCGA-BH-A1F0 
       82.85        42.28        55.69        49.58        17.69        25.81 
TCGA-BH-A1F5 TCGA-BH-A1F8 TCGA-BH-A1FB TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FG 
       89.16        24.66       120.62        33.17        74.73       122.89 
TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FN TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A201 
       63.35        55.00        72.07       144.59        72.07        28.14 
TCGA-BH-A202 TCGA-BH-A204 TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 
       26.14        83.31       130.16        10.65         6.44        20.12 
TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5J0 TCGA-BH-A6R8 TCGA-BH-A6R9 
       10.52       109.28         8.94        23.51         9.63         5.26 
TCGA-BH-A8FY TCGA-BH-A8FZ TCGA-BH-A8G0 TCGA-BH-AB28 TCGA-C8-A12M TCGA-C8-A12N 
        9.70        18.87        21.76         9.44        11.77        11.77 
TCGA-C8-A12O TCGA-C8-A12Q TCGA-C8-A12V TCGA-C8-A12W TCGA-C8-A12Z TCGA-C8-A131 
       12.66        12.66        12.66        12.66         0.39         2.24 
TCGA-C8-A132 TCGA-C8-A137 TCGA-C8-A1HE TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HL 
        1.87         4.11        12.33        11.34        11.28        10.42 
TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A26X TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A275 
        0.30         0.23         0.36         8.28         9.67         0.03 
TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-C8-A8HP TCGA-C8-A8HQ 
       12.20         0.99         0.03         0.23        13.02        12.49 
TCGA-C8-A8HR TCGA-C8-A9FZ TCGA-D8-A13Y TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A143 
       13.41        19.46        11.90        13.25        20.58        14.17 
TCGA-D8-A145 TCGA-D8-A147 TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JD 
       13.48        19.20        16.50        18.71        15.78        18.15 
TCGA-D8-A1JH TCGA-D8-A1JI TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JM 
       14.01        18.97        20.09        20.12        20.09        19.40 
TCGA-D8-A1JN TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X6 
       20.38        12.20        13.32        14.70        18.58        17.79 
TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XC TCGA-D8-A1XD 
       16.73        25.74        23.90        27.58        12.39        17.16 
TCGA-D8-A1XG TCGA-D8-A1XJ TCGA-D8-A1XM TCGA-D8-A1XR TCGA-D8-A1XT TCGA-D8-A1XV 
       14.73        21.83        17.69        15.85         6.35        15.16 
TCGA-D8-A1XW TCGA-D8-A1Y0 TCGA-D8-A1Y2 TCGA-D8-A1Y3 TCGA-D8-A27E TCGA-D8-A27G 
       12.66        15.52        14.24        14.14        17.42        13.45 
TCGA-D8-A27H TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27N TCGA-D8-A27P 
       13.05        14.43         9.44        16.41         4.80         0.76 
TCGA-D8-A27R TCGA-D8-A27T TCGA-D8-A27V TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A3Z6 
       10.09        13.08        12.53        12.26        33.37        18.51 
TCGA-D8-A4Z1 TCGA-D8-A73W TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A10A 
       21.67         8.02        43.00        34.42        27.52        40.41 
TCGA-E2-A10B TCGA-E2-A10E TCGA-E2-A14P TCGA-E2-A14Q TCGA-E2-A14S TCGA-E2-A14T 
       37.51        28.44        40.96        38.24        33.17        33.30 
TCGA-E2-A14U TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A153 TCGA-E2-A155 
       43.33        31.96        28.60        18.51        23.24        21.04 
TCGA-E2-A156 TCGA-E2-A158 TCGA-E2-A15A TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15E 
       23.87        14.79        23.34        22.82        17.29        20.71 
TCGA-E2-A15F TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M 
       21.63        17.42        19.40         9.04        20.58        11.05 
TCGA-E2-A15O TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1B0 
       13.02        19.56        17.06        14.07        14.99        53.62 
TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1BC TCGA-E2-A1IE TCGA-E2-A1IG 
       53.03        33.01        32.35        16.47        38.30        32.78 
TCGA-E2-A1IH TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IU 
       33.73        28.44        22.65         3.88        22.19        11.08 
TCGA-E2-A1L6 TCGA-E2-A1L9 TCGA-E2-A1LA TCGA-E2-A1LE TCGA-E2-A1LG TCGA-E2-A1LL 
       54.18        19.66        24.59        28.90        18.87        43.04 
TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A9RU TCGA-E9-A1N3 
        5.52        15.72         8.28        30.61        12.85        34.82 
TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1NC TCGA-E9-A1NE TCGA-E9-A1NF TCGA-E9-A1NG 
       32.88        36.82        39.55        35.77        35.24        25.84 
TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R5 TCGA-E9-A1R6 
       11.90        28.27        34.95         2.56         3.02         2.76 
TCGA-E9-A1R7 TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RD TCGA-E9-A227 TCGA-E9-A228 
       21.21        32.09        32.09         1.12        32.05        12.53 
TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A24A 
       13.32        39.09        22.75        20.71        17.06        24.56 
TCGA-E9-A2JS TCGA-E9-A2JT TCGA-E9-A3Q9 TCGA-E9-A54X TCGA-E9-A54Y TCGA-E9-A5FK 
       29.72         0.76        18.41        12.33        23.84        14.70 
TCGA-E9-A5UO TCGA-E9-A6HE TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ 
       13.81        15.39        12.20        39.72         8.48        18.21 
TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J5 TCGA-EW-A1OX TCGA-EW-A1OY 
       18.90        13.25        16.57        15.68        29.95        29.85 
TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P3 TCGA-EW-A1P5 TCGA-EW-A1P6 TCGA-EW-A1P7 
       41.13        39.78        52.96        23.11        18.48        30.08 
TCGA-EW-A1PA TCGA-EW-A1PB TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PF TCGA-EW-A1PG 
       18.90        19.99        13.94        10.52        14.43        34.55 
TCGA-EW-A2FW TCGA-GI-A2C8 TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DC 
       22.09         7.40        59.57       216.76        79.10        83.34 
TCGA-GM-A2DD TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN 
       75.02        85.15        86.96       115.69       106.06       101.62 
TCGA-GM-A2DO TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XN TCGA-GM-A4E0 
       85.35       110.50        38.20        43.73        66.38        72.03 
TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2OB TCGA-JL-A3YW TCGA-LD-A66U TCGA-LD-A74U 
       13.55        18.12        62.43        11.84        21.24        13.22 
TCGA-LD-A7W5 TCGA-LD-A7W6 TCGA-LD-A9QF TCGA-LL-A440 TCGA-LL-A442 TCGA-LL-A50Y 
        7.10        13.28        10.62        24.95        10.95        25.05 
TCGA-LL-A5YL TCGA-LL-A5YM TCGA-LL-A5YO TCGA-LL-A73Y TCGA-LL-A73Z TCGA-LL-A740 
       17.06        15.32        14.47        15.68         7.46        14.50 
TCGA-LL-A7SZ TCGA-LL-A7T0 TCGA-LL-A9Q3 TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 
       14.70        12.36        14.07        27.91        22.39         2.10 
TCGA-OL-A5D6 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RU TCGA-OL-A5RV TCGA-OL-A5RW 
       36.30        31.99        58.62        40.08        34.92        36.36 
TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A66H TCGA-OL-A66J TCGA-OL-A66L 
       28.87        24.72        22.32        26.70        65.62        42.77 
TCGA-OL-A66N TCGA-OL-A66O TCGA-OL-A66P TCGA-OL-A6VQ TCGA-OL-A6VR TCGA-PE-A5DC 
       26.04        17.36        14.07        19.73        40.11        47.01 
TCGA-PE-A5DE TCGA-PL-A8LX TCGA-PL-A8LY TCGA-PL-A8LZ TCGA-S3-A6ZH TCGA-S3-AA0Z 
       86.96         0.16         0.26         9.93        16.93        16.80 
TCGA-S3-AA11 TCGA-S3-AA12 TCGA-S3-AA14 TCGA-S3-AA15 TCGA-WT-AB41 TCGA-XX-A899 
       13.84        15.35        14.96        13.84        52.96        15.35 
TCGA-XX-A89A TCGA-Z7-A8R6 
       16.04       107.05 

  DEL PEAK 31(15Q13.1) MUTATED DEL PEAK 31(15Q13.1) WILD-TYPE 
                          0.16                           0.03 
  DEL PEAK 31(15Q13.1) MUTATED DEL PEAK 31(15Q13.1) WILD-TYPE 
                        211.56                         234.28 
  DEL PEAK 31(15Q13.1) MUTATED DEL PEAK 31(15Q13.1) WILD-TYPE 
                        26.285                         23.560 
[1] "0.2 - 211.6 (26.3)" "0.0 - 234.3 (23.6)"
[1] "hr=" "1.1"
D60V2, continuous
                                vv
clus                             STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  DEL PEAK 31(15Q13.1) MUTATED        27       22        2        0       139
  DEL PEAK 31(15Q13.1) WILD-TYPE      62       59        6        3       214
                                vv
clus                             STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  DEL PEAK 31(15Q13.1) MUTATED          85         1         57          6
  DEL PEAK 31(15Q13.1) WILD-TYPE       160         1         93         23
                                vv
clus                             STAGE IIIC STAGE IV STAGE TIS STAGE X
  DEL PEAK 31(15Q13.1) MUTATED           16        9         0       3
  DEL PEAK 31(15Q13.1) WILD-TYPE         47       11         1      10
D60V3, multiclass
            clus
vv           DEL PEAK 31(15Q13.1) MUTATED DEL PEAK 31(15Q13.1) WILD-TYPE
  STAGE I                              27                             62
  STAGE IA                             22                             59
  STAGE IB                              2                              6
  STAGE II                              0                              3
  STAGE IIA                           139                            214
  STAGE IIB                            85                            160
  STAGE III                             1                              1
  STAGE IIIA                           57                             93
  STAGE IIIB                            6                             23
  STAGE IIIC                           16                             47
  STAGE IV                              9                             11
  STAGE TIS                             0                              1
  STAGE X                               3                             10
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              T1  T2  T3  T4
  DEL PEAK 31(15Q13.1) MUTATED    72 243  41  12
  DEL PEAK 31(15Q13.1) WILD-TYPE 200 373  89  28
D60V4, multiclass
    clus
vv   DEL PEAK 31(15Q13.1) MUTATED DEL PEAK 31(15Q13.1) WILD-TYPE
  T1                           72                            200
  T2                          243                            373
  T3                           41                             89
  T4                           12                             28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              N0  N1  N2  N3
  DEL PEAK 31(15Q13.1) MUTATED   190 108  48  20
  DEL PEAK 31(15Q13.1) WILD-TYPE 311 242  69  55
D60V5, multiclass
    clus
vv   DEL PEAK 31(15Q13.1) MUTATED DEL PEAK 31(15Q13.1) WILD-TYPE
  N0                          190                            311
  N1                          108                            242
  N2                           48                             69
  N3                           20                             55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D60V6, binary
                                cls
clus                               0   1
  DEL PEAK 31(15Q13.1) MUTATED   311   9
  DEL PEAK 31(15Q13.1) WILD-TYPE 568  12
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 31(15Q13.1) MUTATED    311    9
  DEL PEAK 31(15Q13.1) WILD-TYPE  568   12
   clus
vv  DEL PEAK 31(15Q13.1) MUTATED DEL PEAK 31(15Q13.1) WILD-TYPE
  0                          311                            568
  1                            9                             12
[1] 2 2
[1] FALSE
D60V7, binary
                                cls
clus                               0   1
  DEL PEAK 31(15Q13.1) MUTATED   365   4
  DEL PEAK 31(15Q13.1) WILD-TYPE 686   7
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 31(15Q13.1) MUTATED    365    4
  DEL PEAK 31(15Q13.1) WILD-TYPE  686    7
        clus
vv       DEL PEAK 31(15Q13.1) MUTATED DEL PEAK 31(15Q13.1) WILD-TYPE
  FEMALE                          365                            686
  MALE                              4                              7
[1] 2 2
[1] FALSE
                                vv
clus                             INFILTRATING CARCINOMA NOS
  DEL PEAK 31(15Q13.1) MUTATED                            1
  DEL PEAK 31(15Q13.1) WILD-TYPE                          0
                                vv
clus                             INFILTRATING DUCTAL CARCINOMA
  DEL PEAK 31(15Q13.1) MUTATED                             300
  DEL PEAK 31(15Q13.1) WILD-TYPE                           463
                                vv
clus                             INFILTRATING LOBULAR CARCINOMA
  DEL PEAK 31(15Q13.1) MUTATED                               38
  DEL PEAK 31(15Q13.1) WILD-TYPE                            154
                                vv
clus                             MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  DEL PEAK 31(15Q13.1) MUTATED                     4                     1
  DEL PEAK 31(15Q13.1) WILD-TYPE                   2                     3
                                vv
clus                             MIXED HISTOLOGY (PLEASE SPECIFY)
  DEL PEAK 31(15Q13.1) MUTATED                                  9
  DEL PEAK 31(15Q13.1) WILD-TYPE                               21
                                vv
clus                             MUCINOUS CARCINOMA OTHER  SPECIFY
  DEL PEAK 31(15Q13.1) MUTATED                    1             14
  DEL PEAK 31(15Q13.1) WILD-TYPE                 16             34
D60V8, multiclass
                                  clus
vv                                 DEL PEAK 31(15Q13.1) MUTATED
  INFILTRATING CARCINOMA NOS                                  1
  INFILTRATING DUCTAL CARCINOMA                             300
  INFILTRATING LOBULAR CARCINOMA                             38
  MEDULLARY CARCINOMA                                         4
  METAPLASTIC CARCINOMA                                       1
  MIXED HISTOLOGY (PLEASE SPECIFY)                            9
  MUCINOUS CARCINOMA                                          1
  OTHER  SPECIFY                                             14
                                  clus
vv                                 DEL PEAK 31(15Q13.1) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                    0
  INFILTRATING DUCTAL CARCINOMA                               463
  INFILTRATING LOBULAR CARCINOMA                              154
  MEDULLARY CARCINOMA                                           2
  METAPLASTIC CARCINOMA                                         3
  MIXED HISTOLOGY (PLEASE SPECIFY)                             21
  MUCINOUS CARCINOMA                                           16
  OTHER  SPECIFY                                               34
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D60V9, binary
                                cls
clus                               0   1
  DEL PEAK 31(15Q13.1) MUTATED   114 255
  DEL PEAK 31(15Q13.1) WILD-TYPE 174 519
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 31(15Q13.1) MUTATED    114  255
  DEL PEAK 31(15Q13.1) WILD-TYPE  174  519
     clus
vv    DEL PEAK 31(15Q13.1) MUTATED DEL PEAK 31(15Q13.1) WILD-TYPE
  NO                           114                            174
  YES                          255                            519
[1] 2 2
[1] FALSE
D60V10, continuous
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 31(15Q13.1) MUTATED                                  0    23
  DEL PEAK 31(15Q13.1) WILD-TYPE                                1    37
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 31(15Q13.1) MUTATED                          73   242
  DEL PEAK 31(15Q13.1) WILD-TYPE                        97   494
D60V11, multiclass
                                  clus
vv                                 DEL PEAK 31(15Q13.1) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            0
  ASIAN                                                      23
  BLACK OR AFRICAN AMERICAN                                  73
  WHITE                                                     242
                                  clus
vv                                 DEL PEAK 31(15Q13.1) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              1
  ASIAN                                                        37
  BLACK OR AFRICAN AMERICAN                                    97
  WHITE                                                       494
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D60V12, binary
                                cls
clus                               0   1
  DEL PEAK 31(15Q13.1) MUTATED    12 303
  DEL PEAK 31(15Q13.1) WILD-TYPE  26 555
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 31(15Q13.1) MUTATED     12  303
  DEL PEAK 31(15Q13.1) WILD-TYPE   26  555
                        clus
vv                       DEL PEAK 31(15Q13.1) MUTATED
  HISPANIC OR LATINO                               12
  NOT HISPANIC OR LATINO                          303
                        clus
vv                       DEL PEAK 31(15Q13.1) WILD-TYPE
  HISPANIC OR LATINO                                 26
  NOT HISPANIC OR LATINO                            555
[1] 2 2
[1] FALSE

Clustering(61) Variable = DEL PEAK 32(16Q24.3) MUTATION ANALYSIS
D61V1, survival
                                sevent
clus2                              0   1
  DEL PEAK 32(16Q24.3) MUTATED   584  82
  DEL PEAK 32(16Q24.3) WILD-TYPE 332  46
  DEL PEAK 32(16Q24.3) MUTATED DEL PEAK 32(16Q24.3) WILD-TYPE 
                           666                            378 
  DEL PEAK 32(16Q24.3) MUTATED DEL PEAK 32(16Q24.3) WILD-TYPE 
                            82                             46 
$`DEL PEAK 32(16Q24.3) MUTATED`
TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT0 TCGA-5L-AAT1 TCGA-A1-A0SD TCGA-A1-A0SE 
       40.14        11.44        48.56        48.36        14.37        43.43 
TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI TCGA-A1-A0SK TCGA-A1-A0SM 
       48.10        14.27        47.24        20.88        31.79         7.96 
TCGA-A1-A0SN TCGA-A1-A0SO TCGA-A2-A04N TCGA-A2-A04R TCGA-A2-A04U TCGA-A2-A04V 
       39.32        28.01       104.81       121.94        87.25        63.12 
TCGA-A2-A0CK TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CQ TCGA-A2-A0CR TCGA-A2-A0CS 
      136.73       114.81        92.48        88.60       107.93        75.55 
TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CX TCGA-A2-A0D0 TCGA-A2-A0D1 
       75.25         5.19        98.99        56.81        67.33        34.55 
TCGA-A2-A0D3 TCGA-A2-A0D4 TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EQ 
       61.58        25.22       101.72       134.40        80.28        79.76 
TCGA-A2-A0ER TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0EY 
       74.40        34.29        31.82        61.94        24.72        63.29 
TCGA-A2-A0SU TCGA-A2-A0SY TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T4 TCGA-A2-A0T5 
       54.64        44.28        17.52        17.13        20.52        17.46 
TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YF TCGA-A2-A0YH 
       18.90        20.75        32.55        25.28        50.47        21.67 
TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A0YM TCGA-A2-A1FV TCGA-A2-A1FX TCGA-A2-A1G0 
       19.33        48.46        31.73        23.47        60.72        20.25 
TCGA-A2-A1G4 TCGA-A2-A259 TCGA-A2-A25A TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A3KC 
       19.56        52.47       107.70        18.15       105.34        20.88 
TCGA-A2-A3KD TCGA-A2-A3XT TCGA-A2-A4RY TCGA-A2-A4S3 TCGA-A7-A0CD TCGA-A7-A0CE 
       39.65        83.01        21.30        21.90        38.30        35.31 
TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0CJ TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A0DC 
       34.29        35.47        30.61        35.67        33.11        29.79 
TCGA-A7-A13D TCGA-A7-A13F TCGA-A7-A13G TCGA-A7-A13H TCGA-A7-A26E TCGA-A7-A26I 
       31.73        25.15        23.61        29.56        31.36        21.73 
TCGA-A7-A26J TCGA-A7-A3IZ TCGA-A7-A3J1 TCGA-A7-A426 TCGA-A7-A4SA TCGA-A7-A4SB 
       20.61        10.59        11.28        11.97        14.93        13.74 
TCGA-A7-A4SE TCGA-A7-A5ZW TCGA-A7-A5ZX TCGA-A7-A6VW TCGA-A8-A06O TCGA-A8-A06P 
       21.17        10.72        11.05         9.37        13.02        13.02 
TCGA-A8-A06Q TCGA-A8-A06T TCGA-A8-A06U TCGA-A8-A06X TCGA-A8-A06Z TCGA-A8-A075 
        1.02        53.06        29.03        31.00         1.02        17.03 
TCGA-A8-A079 TCGA-A8-A07B TCGA-A8-A07E TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07J 
        9.01        43.00        19.99        18.97        18.97        12.00 
TCGA-A8-A07L TCGA-A8-A07P TCGA-A8-A07S TCGA-A8-A084 TCGA-A8-A085 TCGA-A8-A086 
       32.05        10.98         7.99        15.06        36.95        13.02 
TCGA-A8-A08B TCGA-A8-A08C TCGA-A8-A08F TCGA-A8-A08G TCGA-A8-A08L TCGA-A8-A08O 
       38.01        28.96        33.01        19.96         9.99        31.00 
TCGA-A8-A08P TCGA-A8-A08S TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A08Z TCGA-A8-A091 
       31.00        33.01       112.08        43.00        40.01        33.01 
TCGA-A8-A092 TCGA-A8-A093 TCGA-A8-A095 TCGA-A8-A097 TCGA-A8-A099 TCGA-A8-A09A 
       30.97        17.95        41.98        12.00         9.99         9.99 
TCGA-A8-A09B TCGA-A8-A09K TCGA-A8-A09M TCGA-A8-A09N TCGA-A8-A09Q TCGA-A8-A09R 
       12.00        29.98        33.07         1.02        25.02         8.98 
TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0A2 
       19.04        15.02         0.99        14.01        12.00        19.04 
TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A7 TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-A8-A0AD 
       13.02        21.04         0.99        27.02        17.03        38.04 
TCGA-AC-A23E TCGA-AC-A23G TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FB 
        2.37        10.85         1.48        38.53        99.35        40.57 
TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A2QI TCGA-AC-A3BB 
       55.43        36.99        26.04        50.70         0.92        32.45 
TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3TN TCGA-AC-A3W5 TCGA-AC-A3W6 
       16.31        14.83        22.19        14.99        16.57        19.79 
TCGA-AC-A3YI TCGA-AC-A5XS TCGA-AC-A62V TCGA-AC-A62X TCGA-AC-A6IV TCGA-AC-A6IW 
       23.24         1.55        11.44        13.71        18.67        13.58 
TCGA-AC-A6IX TCGA-AC-A6NO TCGA-AC-A7VB TCGA-AC-A7VC TCGA-AC-A8OP TCGA-AC-A8OQ 
       12.26         1.68         8.22         0.03        20.19         1.12 
TCGA-AC-A8OS TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A041 TCGA-AN-A046 TCGA-AN-A049 
        2.30         0.33         0.33         0.23         0.33         0.62 
TCGA-AN-A04C TCGA-AN-A0AJ TCGA-AN-A0AK TCGA-AN-A0AR TCGA-AN-A0FK TCGA-AN-A0FN 
        1.78         9.96         7.36         0.33         7.00         7.17 
TCGA-AN-A0FS TCGA-AN-A0FW TCGA-AN-A0FZ TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO 
        6.28         0.36         0.33         0.33         0.33        12.33 
TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AO-A03L TCGA-AO-A03N 
        0.30         0.33         0.33         0.33        80.28        66.77 
TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A03V TCGA-AO-A0J3 TCGA-AO-A0J5 
       81.63        95.70        68.75        29.13        21.40        26.04 
TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JC 
       20.32        22.36        53.03        21.53        50.70        50.86 
TCGA-AO-A0JD TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JI TCGA-AO-A0JJ TCGA-AO-A125 
       72.00        76.77        21.37        50.24        62.04        99.25 
TCGA-AO-A126 TCGA-AO-A129 TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12E TCGA-AO-A12G 
      108.72       108.03        90.58        98.27        57.30        41.62 
TCGA-AO-A1KP TCGA-AO-A1KQ TCGA-AO-A1KR TCGA-AO-A1KS TCGA-AO-A1KT TCGA-AQ-A1H2 
       82.62        61.87        70.39         0.53        17.79        15.62 
TCGA-AQ-A1H3 TCGA-AQ-A54N TCGA-AQ-A7U7 TCGA-AR-A0TV TCGA-AR-A0TY TCGA-AR-A0TZ 
       32.52         2.56        19.20        42.35        55.86       107.24 
TCGA-AR-A0U2 TCGA-AR-A0U3 TCGA-AR-A0U4 TCGA-AR-A1AH TCGA-AR-A1AK TCGA-AR-A1AL 
       83.87       114.02        85.97        75.55        51.25        48.82 
TCGA-AR-A1AM TCGA-AR-A1AN TCGA-AR-A1AP TCGA-AR-A1AQ TCGA-AR-A1AR TCGA-AR-A1AW 
       76.11        43.73        39.98        43.07        17.23        63.62 
TCGA-AR-A1AX TCGA-AR-A24H TCGA-AR-A24K TCGA-AR-A24L TCGA-AR-A24N TCGA-AR-A24O 
       62.14       160.90        50.89        94.22        78.51        84.20 
TCGA-AR-A24P TCGA-AR-A24S TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24V TCGA-AR-A24X 
        2.76        97.84        76.01        53.36        85.35        83.77 
TCGA-AR-A251 TCGA-AR-A254 TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LE TCGA-AR-A2LJ 
       78.48        72.76        58.92        93.83       143.21        62.86 
TCGA-AR-A2LK TCGA-AR-A2LL TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ 
       54.21        66.15        52.11        38.17        39.39        40.54 
TCGA-AR-A5QN TCGA-B6-A0I5 TCGA-B6-A0IA TCGA-B6-A0IB TCGA-B6-A0IC TCGA-B6-A0IH 
       16.04       149.59       220.90       129.57        50.70       112.37 
TCGA-B6-A0IM TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RH 
      126.12       110.93       140.88       211.56        68.45       189.01 
TCGA-B6-A0RI TCGA-B6-A0RL TCGA-B6-A0RM TCGA-B6-A0RN TCGA-B6-A0RP TCGA-B6-A0RQ 
      234.28        81.17        78.02       172.96       102.77       140.48 
TCGA-B6-A0RS TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WW TCGA-B6-A0WZ 
      100.70       157.41        97.48       188.68        18.35       129.57 
TCGA-B6-A0X0 TCGA-B6-A0X7 TCGA-B6-A1KC TCGA-B6-A1KI TCGA-B6-A2IU TCGA-B6-A402 
      129.70        58.88        43.59        73.51       170.17        74.99 
TCGA-B6-A408 TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AU TCGA-BH-A0AW TCGA-BH-A0AY 
       68.12       103.63        71.15        24.53        20.45        25.55 
TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B2 TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0B6 
       28.50        46.95        40.83        39.16        48.36        56.94 
TCGA-BH-A0B7 TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BF TCGA-BH-A0BM TCGA-BH-A0BO 
       56.98        37.22        32.02        25.71        61.68        35.67 
TCGA-BH-A0BP TCGA-BH-A0BQ TCGA-BH-A0BS TCGA-BH-A0BT TCGA-BH-A0C1 TCGA-BH-A0C3 
       48.69        27.19        53.95        45.57        44.02        48.13 
TCGA-BH-A0C7 TCGA-BH-A0DE TCGA-BH-A0DH TCGA-BH-A0DK TCGA-BH-A0DO TCGA-BH-A0DP 
       42.90        31.17        38.01        13.91        17.26        15.65 
TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E1 
        2.56        38.47        67.86        16.27         4.41        15.68 
TCGA-BH-A0E2 TCGA-BH-A0E6 TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EA TCGA-BH-A0EB 
       14.30         9.63        44.81        46.19        32.58        24.49 
TCGA-BH-A0EE TCGA-BH-A0GY TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 
       31.00        30.35        15.16        37.78        35.51        24.56 
TCGA-BH-A0HB TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ 
       26.50        20.38         5.85         2.50        13.61        36.85 
TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0W3 TCGA-BH-A0W4 
       12.89        51.32        27.25        50.79        23.93        24.95 
TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A18F TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18K 
       42.35        44.81         8.81         7.23        20.12        90.84 
TCGA-BH-A18L TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18T TCGA-BH-A18U 
       26.66        72.56        37.74        30.28         7.36        51.39 
TCGA-BH-A1EN TCGA-BH-A1EO TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EW 
       69.93        91.99        82.85        42.28        12.00        55.69 
TCGA-BH-A1EY TCGA-BH-A1F2 TCGA-BH-A1F5 TCGA-BH-A1F8 TCGA-BH-A1FB TCGA-BH-A1FC 
       17.69        31.53        89.16        24.66       120.62       114.15 
TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FL TCGA-BH-A1FN TCGA-BH-A202 
       33.17        74.73       122.89        55.00        72.07        26.14 
TCGA-BH-A203 TCGA-BH-A204 TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A28Q 
       38.60        83.31        57.83       130.16        10.65         6.44 
TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42V TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-BH-A8FY 
       20.12        10.52         8.94        18.64        23.51         9.70 
TCGA-BH-A8FZ TCGA-BH-A8G0 TCGA-BH-AB28 TCGA-C8-A12L TCGA-C8-A12N TCGA-C8-A12P 
       18.87        21.76         9.44        11.93        11.77        11.77 
TCGA-C8-A12Z TCGA-C8-A135 TCGA-C8-A137 TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HF 
        0.39         1.05         4.11         4.08        12.33        10.92 
TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A26V TCGA-C8-A26W 
       11.34        11.28         2.30         3.25         0.30         0.23 
TCGA-C8-A26X TCGA-C8-A26Y TCGA-C8-A274 TCGA-C8-A278 TCGA-C8-A3M7 TCGA-C8-A3M8 
        0.36         0.43         9.53         9.50         0.03         0.23 
TCGA-C8-A8HQ TCGA-D8-A13Y TCGA-D8-A13Z TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A145 
       12.49        11.90        20.88        20.58        13.97        13.48 
TCGA-D8-A146 TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JC TCGA-D8-A1JD TCGA-D8-A1JE 
       21.14        14.17        17.49        15.78        18.15        18.90 
TCGA-D8-A1JG TCGA-D8-A1JI TCGA-D8-A1JJ TCGA-D8-A1JN TCGA-D8-A1JP TCGA-D8-A1JS 
       12.03        18.97        20.09        20.38        21.01        12.20 
TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X8 TCGA-D8-A1X9 
       13.32        14.70        18.58        17.79        25.74        23.90 
TCGA-D8-A1XB TCGA-D8-A1XK TCGA-D8-A1XL TCGA-D8-A1XO TCGA-D8-A1XQ TCGA-D8-A1XR 
       18.15        14.50        19.92        15.55        16.41        15.85 
TCGA-D8-A1XS TCGA-D8-A1XY TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y3 TCGA-D8-A27G 
       16.31        16.54        15.52         9.93        14.14        13.45 
TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27P TCGA-D8-A27T TCGA-D8-A27V 
       14.43         9.44        16.41         0.76        13.08        12.53 
TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-D8-A73U TCGA-D8-A73W TCGA-D8-A73X 
       33.37        18.51        21.67        16.18         8.02        12.10 
TCGA-E2-A107 TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10C TCGA-E2-A10E TCGA-E2-A10F 
       34.42        46.59        40.41        40.11        28.44        28.87 
TCGA-E2-A14O TCGA-E2-A14Q TCGA-E2-A14S TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14W 
       44.68        38.24        33.17        43.33        34.26        32.02 
TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A153 TCGA-E2-A154 TCGA-E2-A155 TCGA-E2-A156 
       28.60        18.51        23.24        19.43        21.04        23.87 
TCGA-E2-A159 TCGA-E2-A15A TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15E TCGA-E2-A15F 
       25.05        23.34        22.82        17.29        20.71        21.63 
TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L 
       18.21        12.92        17.42        19.40         9.04        20.58 
TCGA-E2-A15M TCGA-E2-A15O TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A15T 
       11.05        13.02        19.56        17.06        14.07        14.99 
TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1BC TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF 
       33.01        32.35        16.47        17.10        38.30        37.41 
TCGA-E2-A1IH TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IL TCGA-E2-A1IO TCGA-E2-A1IU 
       33.73        33.70        28.44         3.88        20.98        11.08 
TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L8 TCGA-E2-A1LA TCGA-E2-A1LG TCGA-E2-A1LH 
       54.18        27.42        39.62        24.59        18.87       106.75 
TCGA-E2-A1LK TCGA-E2-A1LL TCGA-E2-A2P5 TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A570 
        8.75        43.04        16.93         5.52        15.72        30.61 
TCGA-E2-A573 TCGA-E2-A576 TCGA-E2-A9RU TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N8 
       34.92        34.29        12.85        32.88        36.82        12.00 
TCGA-E9-A1NC TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R0 
       39.55        35.24        25.84         9.86        11.90        28.27 
TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1R7 
       34.95         2.56         6.12         3.02         2.76        21.21 
TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RG TCGA-E9-A1RI 
       32.09        32.09         1.12        34.65        21.27        35.64 
TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A22H 
       34.13        32.05        41.03        12.89        23.51        20.71 
TCGA-E9-A243 TCGA-E9-A244 TCGA-E9-A247 TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A 
       17.06         0.69        27.22         1.94         7.13        24.56 
TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A3HO TCGA-E9-A3X8 TCGA-E9-A54Y TCGA-E9-A5UP 
        0.72        29.72        26.07        15.72        23.84        14.40 
TCGA-E9-A6HE TCGA-EW-A1IW TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 
       15.39        12.20         8.48        18.21        18.90        13.25 
TCGA-EW-A1J3 TCGA-EW-A1J5 TCGA-EW-A1J6 TCGA-EW-A1OV TCGA-EW-A1OZ TCGA-EW-A1P3 
       16.57        15.68        28.77        25.94        40.41        52.96 
TCGA-EW-A1P5 TCGA-EW-A1P6 TCGA-EW-A1P8 TCGA-EW-A1PC TCGA-EW-A1PE TCGA-EW-A1PG 
       23.11        18.48         7.86         6.15        10.52        34.55 
TCGA-EW-A2FS TCGA-EW-A3E8 TCGA-EW-A423 TCGA-EW-A424 TCGA-GI-A2C8 TCGA-GM-A2D9 
       52.73        34.03        10.16        23.51         7.40        59.57 
TCGA-GM-A2DA TCGA-GM-A2DC TCGA-GM-A2DH TCGA-GM-A2DI TCGA-GM-A2DL TCGA-GM-A2DN 
      216.76        83.34        72.10        85.15       115.69       101.62 
TCGA-GM-A2DO TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV 
       85.35       110.50        38.20        66.38        72.03        13.55 
TCGA-GM-A5PX TCGA-HN-A2NL TCGA-HN-A2OB TCGA-JL-A3YX TCGA-LD-A66U TCGA-LD-A74U 
       18.12         2.60        62.43        11.57        21.24        13.22 
TCGA-LD-A7W6 TCGA-LD-A9QF TCGA-LL-A50Y TCGA-LL-A5YL TCGA-LL-A5YN TCGA-LL-A6FP 
       13.28        10.62        25.05        17.06        14.70        22.26 
TCGA-LL-A7T0 TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5D7 
       12.36        27.91        22.39         2.10        36.30        58.52 
TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RV TCGA-OL-A5RW TCGA-OL-A5RX TCGA-OL-A5S0 
       31.99        58.62        34.92        36.36        28.87        20.38 
TCGA-OL-A66J TCGA-OL-A66K TCGA-OL-A66L TCGA-OL-A66N TCGA-OL-A66P TCGA-OL-A6VO 
       65.62        41.92        42.77        26.04        14.07        28.21 
TCGA-OL-A6VQ TCGA-OL-A6VR TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE TCGA-S3-A6ZF 
       19.73        40.11        47.01        64.21        86.96        16.50 
TCGA-S3-A6ZG TCGA-S3-AA0Z TCGA-S3-AA10 TCGA-S3-AA12 TCGA-S3-AA14 TCGA-S3-AA17 
       13.12        16.80        15.39        15.35        14.96        13.94 
TCGA-W8-A86G TCGA-WT-AB44 TCGA-XX-A899 TCGA-XX-A89A TCGA-Z7-A8R5 TCGA-Z7-A8R6 
       11.41        29.03        15.35        16.04       108.07       107.05 

$`DEL PEAK 32(16Q24.3) WILD-TYPE`
TCGA-3C-AAAU TCGA-3C-AALI TCGA-3C-AALJ TCGA-5T-A9QA TCGA-A1-A0SB TCGA-A1-A0SJ 
      129.14       131.67        42.81         9.96         8.52        13.68 
TCGA-A1-A0SP TCGA-A1-A0SQ TCGA-A2-A04P TCGA-A2-A04Q TCGA-A2-A04T TCGA-A2-A04W 
       19.20        18.21        18.02        78.41        73.84       101.98 
TCGA-A2-A04X TCGA-A2-A04Y TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CW TCGA-A2-A0D2 
       55.43        36.13        99.12        24.79       107.93        33.76 
TCGA-A2-A0EP TCGA-A2-A0ES TCGA-A2-A0ET TCGA-A2-A0ST TCGA-A2-A0SV TCGA-A2-A0SW 
      107.61        72.00        35.05        99.19        27.12        44.88 
TCGA-A2-A0SX TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0YE TCGA-A2-A0YG TCGA-A2-A0YI 
       50.43         8.38        49.84        18.21        21.90        49.48 
TCGA-A2-A0YJ TCGA-A2-A0YT TCGA-A2-A1FW TCGA-A2-A1FZ TCGA-A2-A1G1 TCGA-A2-A1G6 
       18.61        23.77        17.36        22.45        19.20        16.47 
TCGA-A2-A25B TCGA-A2-A25C TCGA-A2-A25F TCGA-A2-A3XS TCGA-A2-A3XU TCGA-A2-A3XV 
       42.44        17.19        10.59        33.93        29.98        32.75 
TCGA-A2-A3XW TCGA-A2-A3XX TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A3Y0 TCGA-A2-A4RW 
       49.48        47.31        34.98        50.37        38.37         7.30 
TCGA-A2-A4RX TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A7-A0D9 TCGA-A7-A13E 
       24.39        23.21        26.96        21.14        37.45        20.19 
TCGA-A7-A26F TCGA-A7-A26G TCGA-A7-A26H TCGA-A7-A2KD TCGA-A7-A3IY TCGA-A7-A3J0 
       24.26        23.74        23.80        22.32        11.34        10.29 
TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A4SD TCGA-A7-A4SF TCGA-A7-A56D TCGA-A7-A5ZV 
       13.41        14.70        14.50        17.92        14.73        12.10 
TCGA-A7-A6VV TCGA-A7-A6VX TCGA-A7-A6VY TCGA-A8-A06R TCGA-A8-A06Y TCGA-A8-A076 
       10.29        10.42         8.75        17.98        26.01        53.98 
TCGA-A8-A07I TCGA-A8-A07O TCGA-A8-A07R TCGA-A8-A07U TCGA-A8-A07W TCGA-A8-A07Z 
       14.01         9.99         8.98        24.99         9.99        45.07 
TCGA-A8-A082 TCGA-A8-A08A TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08R TCGA-A8-A09C 
       18.05         0.99        12.00        37.05         0.99         1.02 
TCGA-A8-A09D TCGA-A8-A09E TCGA-A8-A09I TCGA-AC-A23C TCGA-AC-A23H TCGA-AC-A2FK 
       50.04        49.05        45.07         0.95         5.72        38.79 
TCGA-AC-A2QH TCGA-AC-A2QJ TCGA-AC-A3YJ TCGA-AC-A62Y TCGA-AC-A8OR TCGA-AN-A04A 
       33.04         2.27        24.79        17.42         1.32         2.96 
TCGA-AN-A04D TCGA-AN-A0AL TCGA-AN-A0AM TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FD 
        1.71         6.51         0.16         0.33         0.33         6.44 
TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FL TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FX 
        5.65         7.96         7.59         7.04         0.33         0.33 
TCGA-AN-A0FY TCGA-AN-A0XU TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03M TCGA-AO-A03T 
        0.33         0.33         5.33         5.59        61.35        47.87 
TCGA-AO-A03U TCGA-AO-A0J2 TCGA-AO-A0J4 TCGA-AO-A0J6 TCGA-AO-A0JG TCGA-AO-A0JL 
       58.95        32.78        52.18        37.48        26.24        55.33 
TCGA-AO-A0JM TCGA-AO-A124 TCGA-AO-A128 TCGA-AO-A12D TCGA-AO-A12F TCGA-AO-A12H 
       71.80       102.58       106.78        64.04        48.36        28.37 
TCGA-AO-A1KO TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A0Y5 TCGA-AQ-A54O 
       14.73        24.79        26.93       130.09         5.65        32.91 
TCGA-AR-A0TP TCGA-AR-A0TQ TCGA-AR-A0TR TCGA-AR-A0TS TCGA-AR-A0TT TCGA-AR-A0TW 
      111.32        73.64         5.26        74.79        86.66        98.93 
TCGA-AR-A0TX TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AO 
       64.83        65.36       101.95        61.84        52.77        43.56 
TCGA-AR-A1AS TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A1AY TCGA-AR-A24M TCGA-AR-A24Q 
       37.81        76.21        61.28        33.73        96.89       104.28 
TCGA-AR-A24R TCGA-AR-A24W TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A252 TCGA-AR-A2LH 
       87.22        50.96        79.00        89.00        73.18        20.25 
TCGA-AR-A2LR TCGA-AR-A5QM TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I2 
       20.38        54.74        20.45        10.59        77.62       143.38 
TCGA-B6-A0I9 TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0IN 
       12.13        65.72       146.50       176.98        18.77        84.59 
TCGA-B6-A0IO TCGA-B6-A0RO TCGA-B6-A0RT TCGA-B6-A0RU TCGA-B6-A0WV TCGA-B6-A0WX 
      110.14       162.05        89.46       131.21        79.63        21.47 
TCGA-B6-A0WY TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A1KF TCGA-B6-A1KN 
      113.79       186.48        28.27        68.94       101.52       139.17 
TCGA-B6-A401 TCGA-BH-A0AV TCGA-BH-A0B3 TCGA-BH-A0B9 TCGA-BH-A0BD TCGA-BH-A0BG 
       85.35        59.84        39.55        51.68        18.21        24.85 
TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BR TCGA-BH-A0BV TCGA-BH-A0BW TCGA-BH-A0BZ 
       21.70        44.05        53.69        49.94        11.67        49.05 
TCGA-BH-A0C0 TCGA-BH-A0DD TCGA-BH-A0DG TCGA-BH-A0DI TCGA-BH-A0DL TCGA-BH-A0DQ 
       41.75        45.83        23.44        22.13        48.23         3.22 
TCGA-BH-A0DX TCGA-BH-A0EI TCGA-BH-A0GZ TCGA-BH-A0H7 TCGA-BH-A0H9 TCGA-BH-A0HA 
       47.41        24.43        10.78        23.08        41.00        52.96 
TCGA-BH-A0RX TCGA-BH-A0WA TCGA-BH-A18G TCGA-BH-A18Q TCGA-BH-A18R TCGA-BH-A18S 
        5.59        23.05         2.01        55.63        37.55        66.05 
TCGA-BH-A18V TCGA-BH-A1ES TCGA-BH-A1EX TCGA-BH-A1F0 TCGA-BH-A1F6 TCGA-BH-A1FH 
       51.16       113.82        49.58        25.81        97.48        36.92 
TCGA-BH-A1FJ TCGA-BH-A1FM TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A201 TCGA-BH-A42U 
       63.35        45.63       144.59        72.07        28.14       109.28 
TCGA-BH-A6R8 TCGA-BH-A6R9 TCGA-C8-A12M TCGA-C8-A12O TCGA-C8-A12Q TCGA-C8-A12U 
        9.63         5.26        11.77        12.66        12.66        12.66 
TCGA-C8-A12V TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A132 
       12.66        12.66        12.66         3.16         2.24         1.87 
TCGA-C8-A134 TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HL TCGA-C8-A26Z TCGA-C8-A273 
        1.12         0.16        12.03        10.42         8.28         9.67 
TCGA-C8-A275 TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A8HP TCGA-C8-A8HR TCGA-C8-A9FZ 
        0.03        12.20         0.99        13.02        13.41        19.46 
TCGA-D8-A140 TCGA-D8-A143 TCGA-D8-A147 TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JF 
       13.25        14.17        19.20        16.50        18.71        12.03 
TCGA-D8-A1JH TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1X7 TCGA-D8-A1XA 
       14.01        20.12        20.09        19.40        16.73        27.58 
TCGA-D8-A1XC TCGA-D8-A1XD TCGA-D8-A1XF TCGA-D8-A1XG TCGA-D8-A1XJ TCGA-D8-A1XM 
       12.39        17.16        15.22        14.73        21.83        17.69 
TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1XV TCGA-D8-A1XW TCGA-D8-A1XZ TCGA-D8-A1Y2 
        6.35        12.99        15.16        12.66        15.32        14.24 
TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27H TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27R 
       17.42        16.04        13.05        13.48         4.80        10.09 
TCGA-D8-A27W TCGA-E2-A105 TCGA-E2-A108 TCGA-E2-A10B TCGA-E2-A14N TCGA-E2-A14P 
       12.26        43.00        27.52        37.51        47.15        40.96 
TCGA-E2-A14R TCGA-E2-A14T TCGA-E2-A14X TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A158 
       38.60        33.30        31.96        25.41        27.12        14.79 
TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B6 TCGA-E2-A1IG TCGA-E2-A1IK 
       60.53        53.62        53.03        28.50        32.78        22.65 
TCGA-E2-A1IN TCGA-E2-A1L9 TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LI TCGA-E2-A56Z 
       22.19        19.66        40.47        28.90       102.61         8.28 
TCGA-E2-A574 TCGA-E9-A1N3 TCGA-E9-A1N6 TCGA-E9-A1N9 TCGA-E9-A1NA TCGA-E9-A1ND 
       26.56        34.82        13.48        13.12        36.56        12.59 
TCGA-E9-A1NE TCGA-E9-A1RC TCGA-E9-A1RF TCGA-E9-A1RH TCGA-E9-A228 TCGA-E9-A229 
       35.77        40.24         6.58        34.59        12.53        13.32 
TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A2JT TCGA-E9-A3Q9 TCGA-E9-A3QA TCGA-E9-A54X 
       39.09        22.75         0.76        18.41        30.18        12.33 
TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UO TCGA-EW-A1IX TCGA-EW-A1OW TCGA-EW-A1OX 
       14.70         0.79        13.81        39.72        22.82        29.95 
TCGA-EW-A1OY TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P4 TCGA-EW-A1P7 TCGA-EW-A1PA 
       29.85        41.13        39.78        29.82        30.08        18.90 
TCGA-EW-A1PB TCGA-EW-A1PD TCGA-EW-A1PF TCGA-EW-A1PH TCGA-EW-A2FR TCGA-EW-A2FV 
       19.99        13.94        14.43        19.96        55.00        25.91 
TCGA-EW-A2FW TCGA-EW-A3U0 TCGA-GI-A2C9 TCGA-GM-A2DB TCGA-GM-A2DD TCGA-GM-A2DF 
       22.09        17.49       109.87        79.10        75.02        70.85 
TCGA-GM-A2DK TCGA-GM-A2DM TCGA-GM-A3XG TCGA-GM-A3XL TCGA-JL-A3YW TCGA-LD-A7W5 
       86.96       106.06        43.73        69.30        11.84         7.10 
TCGA-LL-A440 TCGA-LL-A441 TCGA-LL-A442 TCGA-LL-A5YM TCGA-LL-A5YO TCGA-LL-A5YP 
       24.95        11.44        10.95        15.32        14.47        14.79 
TCGA-LL-A6FQ TCGA-LL-A6FR TCGA-LL-A73Y TCGA-LL-A73Z TCGA-LL-A740 TCGA-LL-A7SZ 
        2.63        16.08        15.68         7.46        14.50        14.70 
TCGA-LL-A8F5 TCGA-LL-A9Q3 TCGA-OL-A5RU TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A66H 
       14.73        14.07        40.08        24.72        22.32        26.70 
TCGA-OL-A66I TCGA-OL-A66O TCGA-OL-A97C TCGA-PL-A8LX TCGA-PL-A8LY TCGA-PL-A8LZ 
       23.47        17.36         8.91         0.16         0.26         9.93 
TCGA-S3-A6ZH TCGA-S3-AA11 TCGA-S3-AA15 TCGA-UL-AAZ6 TCGA-UU-A93S TCGA-WT-AB41 
       16.93        13.84        13.84        17.03         3.81        52.96 

  DEL PEAK 32(16Q24.3) MUTATED DEL PEAK 32(16Q24.3) WILD-TYPE 
                          0.03                           0.03 
  DEL PEAK 32(16Q24.3) MUTATED DEL PEAK 32(16Q24.3) WILD-TYPE 
                        234.28                         186.48 
  DEL PEAK 32(16Q24.3) MUTATED DEL PEAK 32(16Q24.3) WILD-TYPE 
                        25.100                         23.145 
[1] "0.0 - 234.3 (25.1)" "0.0 - 186.5 (23.1)"
[1] "hr=" "1.1"
D61V2, continuous
                                vv
clus                             STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  DEL PEAK 32(16Q24.3) MUTATED        64       50        5        3       225
  DEL PEAK 32(16Q24.3) WILD-TYPE      25       31        3        0       128
                                vv
clus                             STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  DEL PEAK 32(16Q24.3) MUTATED         155         1         96         15
  DEL PEAK 32(16Q24.3) WILD-TYPE        90         1         54         14
                                vv
clus                             STAGE IIIC STAGE IV STAGE TIS STAGE X
  DEL PEAK 32(16Q24.3) MUTATED           44        8         0      10
  DEL PEAK 32(16Q24.3) WILD-TYPE         19       12         1       3
D61V3, multiclass
            clus
vv           DEL PEAK 32(16Q24.3) MUTATED DEL PEAK 32(16Q24.3) WILD-TYPE
  STAGE I                              64                             25
  STAGE IA                             50                             31
  STAGE IB                              5                              3
  STAGE II                              3                              0
  STAGE IIA                           225                            128
  STAGE IIB                           155                             90
  STAGE III                             1                              1
  STAGE IIIA                           96                             54
  STAGE IIIB                           15                             14
  STAGE IIIC                           44                             19
  STAGE IV                              8                             12
  STAGE TIS                             0                              1
  STAGE X                              10                              3
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              T1  T2  T3  T4
  DEL PEAK 32(16Q24.3) MUTATED   179 386  91  20
  DEL PEAK 32(16Q24.3) WILD-TYPE  93 230  39  20
D61V4, multiclass
    clus
vv   DEL PEAK 32(16Q24.3) MUTATED DEL PEAK 32(16Q24.3) WILD-TYPE
  T1                          179                             93
  T2                          386                            230
  T3                           91                             39
  T4                           20                             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              N0  N1  N2  N3
  DEL PEAK 32(16Q24.3) MUTATED   328 217  71  52
  DEL PEAK 32(16Q24.3) WILD-TYPE 173 133  46  23
D61V5, multiclass
    clus
vv   DEL PEAK 32(16Q24.3) MUTATED DEL PEAK 32(16Q24.3) WILD-TYPE
  N0                          328                            173
  N1                          217                            133
  N2                           71                             46
  N3                           52                             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D61V6, binary
                                cls
clus                               0   1
  DEL PEAK 32(16Q24.3) MUTATED   561   9
  DEL PEAK 32(16Q24.3) WILD-TYPE 318  12
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 32(16Q24.3) MUTATED    561    9
  DEL PEAK 32(16Q24.3) WILD-TYPE  318   12
   clus
vv  DEL PEAK 32(16Q24.3) MUTATED DEL PEAK 32(16Q24.3) WILD-TYPE
  0                          561                            318
  1                            9                             12
[1] 2 2
[1] FALSE
D61V7, binary
                                cls
clus                               0   1
  DEL PEAK 32(16Q24.3) MUTATED   671   7
  DEL PEAK 32(16Q24.3) WILD-TYPE 380   4
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 32(16Q24.3) MUTATED    671    7
  DEL PEAK 32(16Q24.3) WILD-TYPE  380    4
        clus
vv       DEL PEAK 32(16Q24.3) MUTATED DEL PEAK 32(16Q24.3) WILD-TYPE
  FEMALE                          671                            380
  MALE                              7                              4
[1] 2 2
[1] FALSE
                                vv
clus                             INFILTRATING CARCINOMA NOS
  DEL PEAK 32(16Q24.3) MUTATED                            0
  DEL PEAK 32(16Q24.3) WILD-TYPE                          1
                                vv
clus                             INFILTRATING DUCTAL CARCINOMA
  DEL PEAK 32(16Q24.3) MUTATED                             460
  DEL PEAK 32(16Q24.3) WILD-TYPE                           303
                                vv
clus                             INFILTRATING LOBULAR CARCINOMA
  DEL PEAK 32(16Q24.3) MUTATED                              172
  DEL PEAK 32(16Q24.3) WILD-TYPE                             20
                                vv
clus                             MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  DEL PEAK 32(16Q24.3) MUTATED                     3                     1
  DEL PEAK 32(16Q24.3) WILD-TYPE                   3                     3
                                vv
clus                             MIXED HISTOLOGY (PLEASE SPECIFY)
  DEL PEAK 32(16Q24.3) MUTATED                                 20
  DEL PEAK 32(16Q24.3) WILD-TYPE                               10
                                vv
clus                             MUCINOUS CARCINOMA OTHER  SPECIFY
  DEL PEAK 32(16Q24.3) MUTATED                    3             19
  DEL PEAK 32(16Q24.3) WILD-TYPE                 14             29
D61V8, multiclass
                                  clus
vv                                 DEL PEAK 32(16Q24.3) MUTATED
  INFILTRATING CARCINOMA NOS                                  0
  INFILTRATING DUCTAL CARCINOMA                             460
  INFILTRATING LOBULAR CARCINOMA                            172
  MEDULLARY CARCINOMA                                         3
  METAPLASTIC CARCINOMA                                       1
  MIXED HISTOLOGY (PLEASE SPECIFY)                           20
  MUCINOUS CARCINOMA                                          3
  OTHER  SPECIFY                                             19
                                  clus
vv                                 DEL PEAK 32(16Q24.3) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                    1
  INFILTRATING DUCTAL CARCINOMA                               303
  INFILTRATING LOBULAR CARCINOMA                               20
  MEDULLARY CARCINOMA                                           3
  METAPLASTIC CARCINOMA                                         3
  MIXED HISTOLOGY (PLEASE SPECIFY)                             10
  MUCINOUS CARCINOMA                                           14
  OTHER  SPECIFY                                               29
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D61V9, binary
                                cls
clus                               0   1
  DEL PEAK 32(16Q24.3) MUTATED   180 498
  DEL PEAK 32(16Q24.3) WILD-TYPE 108 276
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 32(16Q24.3) MUTATED    180  498
  DEL PEAK 32(16Q24.3) WILD-TYPE  108  276
     clus
vv    DEL PEAK 32(16Q24.3) MUTATED DEL PEAK 32(16Q24.3) WILD-TYPE
  NO                           180                            108
  YES                          498                            276
[1] 2 2
[1] FALSE
D61V10, continuous
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 32(16Q24.3) MUTATED                                  1    34
  DEL PEAK 32(16Q24.3) WILD-TYPE                                0    26
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 32(16Q24.3) MUTATED                          89   483
  DEL PEAK 32(16Q24.3) WILD-TYPE                        81   253
D61V11, multiclass
                                  clus
vv                                 DEL PEAK 32(16Q24.3) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            1
  ASIAN                                                      34
  BLACK OR AFRICAN AMERICAN                                  89
  WHITE                                                     483
                                  clus
vv                                 DEL PEAK 32(16Q24.3) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              0
  ASIAN                                                        26
  BLACK OR AFRICAN AMERICAN                                    81
  WHITE                                                       253
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D61V12, binary
                                cls
clus                               0   1
  DEL PEAK 32(16Q24.3) MUTATED    20 540
  DEL PEAK 32(16Q24.3) WILD-TYPE  18 318
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 32(16Q24.3) MUTATED     20  540
  DEL PEAK 32(16Q24.3) WILD-TYPE   18  318
                        clus
vv                       DEL PEAK 32(16Q24.3) MUTATED
  HISPANIC OR LATINO                               20
  NOT HISPANIC OR LATINO                          540
                        clus
vv                       DEL PEAK 32(16Q24.3) WILD-TYPE
  HISPANIC OR LATINO                                 18
  NOT HISPANIC OR LATINO                            318
[1] 2 2
[1] FALSE

Clustering(62) Variable = DEL PEAK 33(17P12) MUTATION ANALYSIS
D62V1, survival
                              sevent
clus2                            0   1
  DEL PEAK 33(17P12) MUTATED   546  81
  DEL PEAK 33(17P12) WILD-TYPE 370  47
  DEL PEAK 33(17P12) MUTATED DEL PEAK 33(17P12) WILD-TYPE 
                         627                          417 
  DEL PEAK 33(17P12) MUTATED DEL PEAK 33(17P12) WILD-TYPE 
                          81                           47 
$`DEL PEAK 33(17P12) MUTATED`
TCGA-3C-AAAU TCGA-3C-AALI TCGA-3C-AALJ TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT0 
      129.14       131.67        42.81        40.14        11.44        48.56 
TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SH TCGA-A1-A0SI TCGA-A1-A0SJ 
       14.37        43.43        48.10        47.24        20.88        13.68 
TCGA-A1-A0SK TCGA-A1-A0SN TCGA-A1-A0SO TCGA-A1-A0SP TCGA-A1-A0SQ TCGA-A2-A04P 
       31.79        39.32        28.01        19.20        18.21        18.02 
TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04V TCGA-A2-A04W TCGA-A2-A04Y TCGA-A2-A0CK 
      121.94        73.84        63.12       101.98        36.13       136.73 
TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CR TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV 
       24.79       114.81       107.93        75.25         5.19        98.99 
TCGA-A2-A0CW TCGA-A2-A0CX TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D4 TCGA-A2-A0EN 
      107.93        56.81        67.33        34.55        25.22       134.40 
TCGA-A2-A0EO TCGA-A2-A0EQ TCGA-A2-A0EV TCGA-A2-A0EX TCGA-A2-A0EY TCGA-A2-A0SV 
       80.28        79.76        31.82        24.72        63.29        27.12 
TCGA-A2-A0SW TCGA-A2-A0SX TCGA-A2-A0SY TCGA-A2-A0T1 TCGA-A2-A0T3 TCGA-A2-A0T4 
       44.88        50.43        44.28        17.13        49.84        20.52 
TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YE TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A0YK 
       20.75        32.55        18.21        21.90        21.67        19.33 
TCGA-A2-A0YL TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1G0 TCGA-A2-A1G1 
       48.46        23.77        23.47        17.36        20.25        19.20 
TCGA-A2-A1G4 TCGA-A2-A259 TCGA-A2-A25A TCGA-A2-A25B TCGA-A2-A25D TCGA-A2-A3KD 
       19.56        52.47       107.70        42.44        18.15        39.65 
TCGA-A2-A3XT TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A3Y0 
       83.01        32.75        49.48        34.98        50.37        38.37 
TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4S1 TCGA-A2-A4S3 TCGA-A7-A0CD TCGA-A7-A0CG 
        7.30        24.39        26.96        21.90        38.30        34.29 
TCGA-A7-A0CJ TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A13D TCGA-A7-A13F TCGA-A7-A13H 
       30.61        37.45        35.67        31.73        25.15        29.56 
TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26G TCGA-A7-A26H TCGA-A7-A26I TCGA-A7-A2KD 
       31.36        24.26        23.74        23.80        21.73        22.32 
TCGA-A7-A4SA TCGA-A7-A4SB TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF TCGA-A7-A56D 
       14.93        13.74        14.50        21.17        17.92        14.73 
TCGA-A7-A5ZX TCGA-A7-A6VW TCGA-A7-A6VX TCGA-A7-A6VY TCGA-A8-A06O TCGA-A8-A06R 
       11.05         9.37        10.42         8.75        13.02        17.98 
TCGA-A8-A06U TCGA-A8-A06X TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A079 
       29.03        31.00         1.02        17.03        53.98         9.01 
TCGA-A8-A07B TCGA-A8-A07E TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07L TCGA-A8-A07O 
       43.00        19.99        18.97        14.01        32.05         9.99 
TCGA-A8-A07R TCGA-A8-A07W TCGA-A8-A084 TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08B 
        8.98         9.99        15.06        36.95        13.02        38.01 
TCGA-A8-A08F TCGA-A8-A08G TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08O 
       33.01        19.96        12.00        37.05         9.99        31.00 
TCGA-A8-A08R TCGA-A8-A08S TCGA-A8-A08X TCGA-A8-A092 TCGA-A8-A093 TCGA-A8-A097 
        0.99        33.01        43.00        30.97        17.95        12.00 
TCGA-A8-A09A TCGA-A8-A09C TCGA-A8-A09I TCGA-A8-A09K TCGA-A8-A09M TCGA-A8-A09N 
        9.99         1.02        45.07        29.98        33.07         1.02 
TCGA-A8-A09R TCGA-A8-A09X TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A7 
        8.98        14.01        19.04        13.02        21.04         0.99 
TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23E TCGA-AC-A2BM TCGA-AC-A2FB 
       17.03        38.04         0.95         2.37        99.35        40.57 
TCGA-AC-A2FM TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3OD TCGA-AC-A3TN 
       26.04         0.92         2.27        32.45        14.83        14.99 
TCGA-AC-A3W5 TCGA-AC-A3W6 TCGA-AC-A62X TCGA-AC-A62Y TCGA-AC-A6IX TCGA-AC-A7VB 
       16.57        19.79        13.71        17.42        12.26         8.22 
TCGA-AC-A8OP TCGA-AC-A8OQ TCGA-AC-A8OS TCGA-AN-A041 TCGA-AN-A046 TCGA-AN-A04A 
       20.19         1.12         2.30         0.23         0.33         2.96 
TCGA-AN-A04C TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AL TCGA-AN-A0AM TCGA-AN-A0AS 
        1.78         1.71         9.96         6.51         0.16         0.33 
TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0FJ TCGA-AN-A0FL TCGA-AN-A0FT TCGA-AN-A0FV 
        0.33         6.44         7.96         7.59         7.04         0.33 
TCGA-AN-A0FX TCGA-AN-A0FY TCGA-AN-A0FZ TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO 
        0.33         0.33         0.33         0.33         0.33        12.33 
TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AN-A0XW TCGA-AO-A03M 
        0.30         0.33         0.33         0.33         5.59        61.35 
TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03V 
       66.77        81.63        95.70        68.75        47.87        29.13 
TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J4 TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JD 
       32.78        21.40        52.18        21.53        50.70        72.00 
TCGA-AO-A0JE TCGA-AO-A0JG TCGA-AO-A0JJ TCGA-AO-A0JM TCGA-AO-A124 TCGA-AO-A126 
       76.77        26.24        62.04        71.80       102.58       108.72 
TCGA-AO-A129 TCGA-AO-A12D TCGA-AO-A12G TCGA-AO-A1KQ TCGA-AO-A1KR TCGA-AO-A1KS 
      108.03        64.04        41.62        61.87        70.39         0.53 
TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A0Y5 TCGA-AQ-A1H3 TCGA-AQ-A54N 
       24.79        26.93       130.09         5.65        32.52         2.56 
TCGA-AQ-A54O TCGA-AR-A0TP TCGA-AR-A0TR TCGA-AR-A0TT TCGA-AR-A0TW TCGA-AR-A0TY 
       32.91       111.32         5.26        86.66        98.93        55.86 
TCGA-AR-A0TZ TCGA-AR-A0U1 TCGA-AR-A0U2 TCGA-AR-A0U3 TCGA-AR-A0U4 TCGA-AR-A1AH 
      107.24       101.95        83.87       114.02        85.97        75.55 
TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AM TCGA-AR-A1AN TCGA-AR-A1AQ TCGA-AR-A1AR 
       61.84        52.77        76.11        43.73        43.07        17.23 
TCGA-AR-A1AS TCGA-AR-A1AU TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24L 
       37.81        76.21        62.14        33.73       160.90        94.22 
TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24R TCGA-AR-A24S TCGA-AR-A24T TCGA-AR-A24U 
       84.20         2.76        87.22        97.84        76.01        53.36 
TCGA-AR-A24V TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A255 
       85.35        79.00        89.00        73.18        72.76        58.92 
TCGA-AR-A256 TCGA-AR-A2LE TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LL TCGA-AR-A2LM 
       93.83       143.21        62.86        54.21        66.15        52.11 
TCGA-AR-A5QM TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I9 TCGA-B6-A0IB TCGA-B6-A0IE 
       54.74        20.45        10.59        12.13       129.57        65.72 
TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN 
      146.50       112.37       176.98        18.77       126.12        84.59 
TCGA-B6-A0IO TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RI 
      110.14       140.88       211.56        68.45       189.01       234.28 
TCGA-B6-A0RL TCGA-B6-A0RS TCGA-B6-A0RT TCGA-B6-A0RU TCGA-B6-A0RV TCGA-B6-A0WS 
       81.17       100.70        89.46       131.21       157.41        97.48 
TCGA-B6-A0WV TCGA-B6-A0WY TCGA-B6-A0WZ TCGA-B6-A0X1 TCGA-B6-A0X7 TCGA-B6-A1KN 
       79.63       113.79       129.57       186.48        58.88       139.17 
TCGA-B6-A402 TCGA-B6-A408 TCGA-BH-A0AV TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0B0 
       74.99        68.12        59.84        20.45        25.55        46.95 
TCGA-BH-A0B2 TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0B6 TCGA-BH-A0B9 
       40.83        39.55        39.16        48.36        56.94        51.68 
TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BF TCGA-BH-A0BM TCGA-BH-A0BP TCGA-BH-A0BQ 
       37.22        32.02        25.71        61.68        48.69        27.19 
TCGA-BH-A0BR TCGA-BH-A0BW TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0C7 
       53.69        11.67        49.05        41.75        44.02        42.90 
TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DP 
       45.83        31.17        22.13        13.91        48.23        15.65 
TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E2 TCGA-BH-A0E6 TCGA-BH-A0E9 
       47.41        16.27         4.41        14.30         9.63        46.19 
TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0H0 TCGA-BH-A0H7 TCGA-BH-A0HA TCGA-BH-A0HB 
       31.00        24.43        15.16        23.08        52.96        26.50 
TCGA-BH-A0HK TCGA-BH-A0HP TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HY TCGA-BH-A0W4 
        5.85        13.61        12.89        51.32        50.79        24.95 
TCGA-BH-A0W7 TCGA-BH-A0WA TCGA-BH-A18F TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18L 
       44.81        23.05         8.81         7.23        20.12        26.66 
TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18S TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A18V 
       30.28        55.63        66.05         7.36        51.39        51.16 
TCGA-BH-A1EO TCGA-BH-A1ES TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EY TCGA-BH-A1F2 
       91.99       113.82        42.28        12.00        17.69        31.53 
TCGA-BH-A1F6 TCGA-BH-A1F8 TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH 
       97.48        24.66        33.17        74.73       122.89        36.92 
TCGA-BH-A1FJ TCGA-BH-A1FM TCGA-BH-A1FN TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A203 
       63.35        45.63        72.07        28.14        26.14        38.60 
TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A42T TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-BH-A8FZ 
       57.83       130.16        10.52        18.64        23.51        18.87 
TCGA-C8-A12L TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12U TCGA-C8-A12Z 
       11.93        12.66        11.77        12.66        12.66         0.39 
TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A135 TCGA-C8-A137 
        3.16         2.24         1.87         1.12         1.05         4.11 
TCGA-C8-A138 TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HJ TCGA-C8-A1HK 
        4.08        10.92        11.34        11.28         0.16        12.03 
TCGA-C8-A1HL TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A26X 
       10.42         2.30         3.25         0.30         0.23         0.36 
TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A3M7 
        0.43         8.28         9.50        12.20         0.99         0.03 
TCGA-C8-A3M8 TCGA-C8-A8HP TCGA-C8-A8HQ TCGA-C8-A9FZ TCGA-D8-A13Y TCGA-D8-A13Z 
        0.23        13.02        12.49        19.46        11.90        20.88 
TCGA-D8-A145 TCGA-D8-A146 TCGA-D8-A147 TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JA 
       13.48        21.14        19.20        14.17        17.49        16.50 
TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JG TCGA-D8-A1JJ 
       18.71        15.78        18.15        18.90        12.03        20.09 
TCGA-D8-A1JK TCGA-D8-A1JN TCGA-D8-A1JP TCGA-D8-A1JT TCGA-D8-A1X5 TCGA-D8-A1X7 
       20.12        20.38        21.01        13.32        18.58        16.73 
TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XF TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XL 
       23.90        27.58        15.22        21.83        14.50        19.92 
TCGA-D8-A1XM TCGA-D8-A1XQ TCGA-D8-A1XS TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1XY 
       17.69        16.41        16.31         6.35        12.99        16.54 
TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 TCGA-D8-A1Y3 TCGA-D8-A27G 
       15.32        15.52         9.93        14.24        14.14        13.45 
TCGA-D8-A27H TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27R TCGA-D8-A27T TCGA-D8-A73U 
       13.05        13.48         4.80        10.09        13.08        16.18 
TCGA-D8-A73W TCGA-E2-A105 TCGA-E2-A10C TCGA-E2-A10F TCGA-E2-A14O TCGA-E2-A14Q 
        8.02        43.00        40.11        28.87        44.68        38.24 
TCGA-E2-A14R TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14V TCGA-E2-A14W TCGA-E2-A14X 
       38.60        33.17        33.30        34.26        32.02        31.96 
TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A153 TCGA-E2-A155 
       28.60        18.51        25.41        27.12        23.24        21.04 
TCGA-E2-A156 TCGA-E2-A158 TCGA-E2-A159 TCGA-E2-A15A TCGA-E2-A15E TCGA-E2-A15G 
       23.87        14.79        25.05        23.34        20.71        18.21 
TCGA-E2-A15H TCGA-E2-A15I TCGA-E2-A15M TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1AZ 
       12.92        17.42        11.05        14.07        14.99        60.53 
TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BC TCGA-E2-A1IE 
       53.62        53.03        32.35        28.50        16.47        38.30 
TCGA-E2-A1IG TCGA-E2-A1IH TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IN TCGA-E2-A1IO 
       32.78        33.73        33.70        28.44        22.19        20.98 
TCGA-E2-A1L7 TCGA-E2-A1L8 TCGA-E2-A1LA TCGA-E2-A1LE TCGA-E2-A1LG TCGA-E2-A1LH 
       27.42        39.62        24.59        28.90        18.87       106.75 
TCGA-E2-A1LI TCGA-E2-A1LL TCGA-E2-A2P5 TCGA-E2-A2P6 TCGA-E2-A56Z TCGA-E2-A573 
      102.61        43.04        16.93         5.52         8.28        34.92 
TCGA-E2-A576 TCGA-E2-A9RU TCGA-E9-A1N5 TCGA-E9-A1N6 TCGA-E9-A1N8 TCGA-E9-A1N9 
       34.29        12.85        36.82        13.48        12.00        13.12 
TCGA-E9-A1NA TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NF TCGA-E9-A1QZ TCGA-E9-A1R0 
       36.56        39.55        12.59        35.24        11.90        28.27 
TCGA-E9-A1R2 TCGA-E9-A1R4 TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RA TCGA-E9-A1RB 
       34.95         6.12         2.76        21.21        32.09        32.09 
TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RG TCGA-E9-A1RH TCGA-E9-A1RI TCGA-E9-A226 
       34.65         6.58        21.27        34.59        35.64        34.13 
TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A22D TCGA-E9-A22G 
       12.53        13.32        39.09        22.75        41.03        23.51 
TCGA-E9-A244 TCGA-E9-A247 TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A3HO TCGA-E9-A3QA 
        0.69        27.22         0.72        29.72        26.07        30.18 
TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A54Y TCGA-E9-A5FL TCGA-E9-A5UO TCGA-E9-A5UP 
       15.72        12.33        23.84         0.79        13.81        14.40 
TCGA-E9-A6HE TCGA-EW-A1IW TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J5 
       15.39        12.20        18.90        13.25        16.57        15.68 
TCGA-EW-A1J6 TCGA-EW-A1OV TCGA-EW-A1OY TCGA-EW-A1OZ TCGA-EW-A1P3 TCGA-EW-A1P4 
       28.77        25.94        29.85        40.41        52.96        29.82 
TCGA-EW-A1P5 TCGA-EW-A1P8 TCGA-EW-A1PA TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A1PE 
       23.11         7.86        18.90         6.15        13.94        10.52 
TCGA-EW-A1PF TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A3E8 TCGA-EW-A423 
       14.43        55.00        52.73        25.91        34.03        10.16 
TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DC TCGA-GM-A2DD 
        7.40       109.87       216.76        79.10        83.34        75.02 
TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A3XL 
       70.85        72.10        85.15        86.96       115.69        69.30 
TCGA-HN-A2OB TCGA-JL-A3YW TCGA-LD-A74U TCGA-LD-A7W5 TCGA-LD-A9QF TCGA-LL-A441 
       62.43        11.84        13.22         7.10        10.62        11.44 
TCGA-LL-A5YM TCGA-LL-A5YO TCGA-LL-A73Z TCGA-LL-A740 TCGA-LL-A7SZ TCGA-LL-A7T0 
       15.32        14.47         7.46        14.50        14.70        12.36 
TCGA-LL-A8F5 TCGA-LL-A9Q3 TCGA-LQ-A4E4 TCGA-OL-A5D6 TCGA-OL-A5D7 TCGA-OL-A5D8 
       14.73        14.07        27.91        36.30        58.52        31.99 
TCGA-OL-A5DA TCGA-OL-A5RW TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66I 
       58.62        36.36        24.72        22.32        20.38        23.47 
TCGA-OL-A66O TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE TCGA-S3-A6ZF TCGA-S3-A6ZH 
       17.36        47.01        64.21        86.96        16.50        16.93 
TCGA-S3-AA10 TCGA-S3-AA17 TCGA-UL-AAZ6 TCGA-UU-A93S TCGA-W8-A86G TCGA-WT-AB41 
       15.39        13.94        17.03         3.81        11.41        52.96 
TCGA-WT-AB44 TCGA-XX-A89A TCGA-Z7-A8R6 
       29.03        16.04       107.05 

$`DEL PEAK 33(17P12) WILD-TYPE`
TCGA-5L-AAT1 TCGA-5T-A9QA TCGA-A1-A0SB TCGA-A1-A0SG TCGA-A1-A0SM TCGA-A2-A04N 
       48.36         9.96         8.52        14.27         7.96       104.81 
TCGA-A2-A04Q TCGA-A2-A04U TCGA-A2-A04X TCGA-A2-A0CL TCGA-A2-A0CP TCGA-A2-A0CQ 
       78.41        87.25        55.43        99.12        92.48        88.60 
TCGA-A2-A0CS TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0EM TCGA-A2-A0EP TCGA-A2-A0ER 
       75.55        33.76        61.58       101.72       107.61        74.40 
TCGA-A2-A0ES TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EW TCGA-A2-A0ST TCGA-A2-A0SU 
       72.00        35.05        34.29        61.94        99.19        54.64 
TCGA-A2-A0T0 TCGA-A2-A0T2 TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0YD TCGA-A2-A0YF 
       17.52         8.38        17.46        18.90        25.28        50.47 
TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A0YM TCGA-A2-A1FX TCGA-A2-A1FZ TCGA-A2-A1G6 
       49.48        18.61        31.73        60.72        22.45        16.47 
TCGA-A2-A25C TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3XS TCGA-A2-A3XU 
       17.19       105.34        10.59        20.88        33.93        29.98 
TCGA-A2-A3XX TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S2 TCGA-A7-A0CE TCGA-A7-A0CH 
       47.31        21.30        23.21        21.14        35.31        35.47 
TCGA-A7-A0DB TCGA-A7-A0DC TCGA-A7-A13E TCGA-A7-A13G TCGA-A7-A26J TCGA-A7-A3IY 
       33.11        29.79        20.19        23.61        20.61        11.34 
TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3J1 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A426 
       10.59        10.29        11.28        13.41        14.70        11.97 
TCGA-A7-A5ZV TCGA-A7-A5ZW TCGA-A7-A6VV TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06T 
       12.10        10.72        10.29        13.02         1.02        53.06 
TCGA-A8-A06Y TCGA-A8-A07F TCGA-A8-A07J TCGA-A8-A07P TCGA-A8-A07S TCGA-A8-A07U 
       26.01        18.97        12.00        10.98         7.99        24.99 
TCGA-A8-A07Z TCGA-A8-A082 TCGA-A8-A08A TCGA-A8-A08C TCGA-A8-A08P TCGA-A8-A08T 
       45.07        18.05         0.99        28.96        31.00       112.08 
TCGA-A8-A08Z TCGA-A8-A091 TCGA-A8-A095 TCGA-A8-A099 TCGA-A8-A09B TCGA-A8-A09D 
       40.01        33.01        41.98         9.99        12.00        50.04 
TCGA-A8-A09E TCGA-A8-A09Q TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A0A1 
       49.05        25.02        19.04        15.02         0.99        12.00 
TCGA-A8-A0A9 TCGA-AC-A23G TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2FF 
       27.02        10.85         5.72         1.48        38.53        55.43 
TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FO TCGA-AC-A2QH TCGA-AC-A3HN TCGA-AC-A3QP 
       36.99        38.79        50.70        33.04        16.31        22.19 
TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A5XS TCGA-AC-A62V TCGA-AC-A6IV TCGA-AC-A6IW 
       23.24        24.79         1.55        11.44        18.67        13.58 
TCGA-AC-A6NO TCGA-AC-A7VC TCGA-AC-A8OR TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A049 
        1.68         0.03         1.32         0.33         0.33         0.62 
TCGA-AN-A0AK TCGA-AN-A0AR TCGA-AN-A0FF TCGA-AN-A0FK TCGA-AN-A0FN TCGA-AN-A0FS 
        7.36         0.33         5.65         7.00         7.17         6.28 
TCGA-AN-A0FW TCGA-AN-A0XS TCGA-AN-A0XV TCGA-AO-A03L TCGA-AO-A03U TCGA-AO-A0J5 
        0.36         0.33         5.33        80.28        58.95        26.04 
TCGA-AO-A0J6 TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JC TCGA-AO-A0JF 
       37.48        20.32        22.36        53.03        50.86        21.37 
TCGA-AO-A0JI TCGA-AO-A0JL TCGA-AO-A125 TCGA-AO-A128 TCGA-AO-A12A TCGA-AO-A12B 
       50.24        55.33        99.25       106.78        90.58        98.27 
TCGA-AO-A12E TCGA-AO-A12F TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KT 
       57.30        48.36        28.37        14.73        82.62        17.79 
TCGA-AQ-A1H2 TCGA-AQ-A7U7 TCGA-AR-A0TQ TCGA-AR-A0TS TCGA-AR-A0TV TCGA-AR-A0TX 
       15.62        19.20        73.64        74.79        42.35        64.83 
TCGA-AR-A0U0 TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AV 
       65.36        51.25        48.82        43.56        39.98        61.28 
TCGA-AR-A1AW TCGA-AR-A24K TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24Q TCGA-AR-A24W 
       63.62        50.89        96.89        78.51       104.28        50.96 
TCGA-AR-A24X TCGA-AR-A251 TCGA-AR-A2LH TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ 
       83.77        78.48        20.25        38.17        39.39        40.54 
TCGA-AR-A2LR TCGA-AR-A5QN TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0IA 
       20.38        16.04        77.62       143.38       149.59       220.90 
TCGA-B6-A0IC TCGA-B6-A0IP TCGA-B6-A0RM TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RP 
       50.70       110.93        78.02       172.96       162.05       102.77 
TCGA-B6-A0RQ TCGA-B6-A0WT TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0X0 TCGA-B6-A0X4 
      140.48       188.68        18.35        21.47       129.70        28.27 
TCGA-B6-A0X5 TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A2IU TCGA-B6-A401 
       68.94        43.59       101.52        73.51       170.17        85.35 
TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AU TCGA-BH-A0AZ TCGA-BH-A0B7 TCGA-BH-A0BD 
      103.63        71.15        24.53        28.50        56.98        18.21 
TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BO TCGA-BH-A0BS TCGA-BH-A0BT 
       24.85        21.70        44.05        35.67        53.95        45.57 
TCGA-BH-A0BV TCGA-BH-A0C3 TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DO TCGA-BH-A0DQ 
       49.94        48.13        23.44        38.01        17.26         3.22 
TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0E1 TCGA-BH-A0E7 TCGA-BH-A0EA 
        2.56        38.47        67.86        15.68        44.81        32.58 
TCGA-BH-A0EB TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 
       24.49        30.35        10.78        37.78        35.51        24.56 
TCGA-BH-A0H9 TCGA-BH-A0HI TCGA-BH-A0HO TCGA-BH-A0HQ TCGA-BH-A0HX TCGA-BH-A0RX 
       41.00        20.38         2.50        36.85        27.25         5.59 
TCGA-BH-A0W3 TCGA-BH-A0W5 TCGA-BH-A18G TCGA-BH-A18K TCGA-BH-A18M TCGA-BH-A18N 
       23.93        42.35         2.01        90.84        72.56        37.74 
TCGA-BH-A18R TCGA-BH-A1EN TCGA-BH-A1ET TCGA-BH-A1EW TCGA-BH-A1EX TCGA-BH-A1F0 
       37.55        69.93        82.85        55.69        49.58        25.81 
TCGA-BH-A1F5 TCGA-BH-A1FB TCGA-BH-A1FC TCGA-BH-A1FL TCGA-BH-A1FR TCGA-BH-A1FU 
       89.16       120.62       114.15        55.00       144.59        72.07 
TCGA-BH-A204 TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42U TCGA-BH-A42V 
       83.31        10.65         6.44        20.12       109.28         8.94 
TCGA-BH-A6R8 TCGA-BH-A6R9 TCGA-BH-A8FY TCGA-BH-A8G0 TCGA-BH-AB28 TCGA-C8-A12M 
        9.63         5.26         9.70        21.76         9.44        11.77 
TCGA-C8-A12N TCGA-C8-A12V TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A1HE TCGA-C8-A273 
       11.77        12.66        12.66        12.66        12.33         9.67 
TCGA-C8-A274 TCGA-C8-A275 TCGA-C8-A8HR TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A142 
        9.53         0.03        13.41        13.25        20.58        13.97 
TCGA-D8-A143 TCGA-D8-A1JF TCGA-D8-A1JH TCGA-D8-A1JI TCGA-D8-A1JL TCGA-D8-A1JM 
       14.17        12.03        14.01        18.97        20.09        19.40 
TCGA-D8-A1JS TCGA-D8-A1JU TCGA-D8-A1X6 TCGA-D8-A1X8 TCGA-D8-A1XB TCGA-D8-A1XC 
       12.20        14.70        17.79        25.74        18.15        12.39 
TCGA-D8-A1XD TCGA-D8-A1XG TCGA-D8-A1XO TCGA-D8-A1XR TCGA-D8-A1XV TCGA-D8-A1XW 
       17.16        14.73        15.55        15.85        15.16        12.66 
TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27P 
       17.42        16.04        14.43         9.44        16.41         0.76 
TCGA-D8-A27V TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-D8-A73X 
       12.53        12.26        33.37        18.51        21.67        12.10 
TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10E 
       34.42        27.52        46.59        40.41        37.51        28.44 
TCGA-E2-A14N TCGA-E2-A14P TCGA-E2-A14U TCGA-E2-A154 TCGA-E2-A15C TCGA-E2-A15D 
       47.15        40.96        43.33        19.43        22.82        17.29 
TCGA-E2-A15F TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15O TCGA-E2-A15P 
       21.63        19.40         9.04        20.58        13.02        19.56 
TCGA-E2-A15R TCGA-E2-A1B4 TCGA-E2-A1BD TCGA-E2-A1IF TCGA-E2-A1IK TCGA-E2-A1IL 
       17.06        33.01        17.10        37.41        22.65         3.88 
TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L9 TCGA-E2-A1LB TCGA-E2-A1LK TCGA-E2-A3DX 
       11.08        54.18        19.66        40.47         8.75        15.72 
TCGA-E2-A570 TCGA-E2-A574 TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1NE TCGA-E9-A1NG 
       30.61        26.56        34.82        32.88        35.77        25.84 
TCGA-E9-A1NI TCGA-E9-A1R3 TCGA-E9-A1R5 TCGA-E9-A1RC TCGA-E9-A1RD TCGA-E9-A227 
        9.86         2.56         3.02        40.24         1.12        32.05 
TCGA-E9-A22E TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A 
       12.89        20.71        17.06         1.94         7.13        24.56 
TCGA-E9-A2JT TCGA-E9-A3Q9 TCGA-E9-A5FK TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ 
        0.76        18.41        14.70        39.72         8.48        18.21 
TCGA-EW-A1OW TCGA-EW-A1OX TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P6 TCGA-EW-A1P7 
       22.82        29.95        41.13        39.78        18.48        30.08 
TCGA-EW-A1PB TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FW TCGA-EW-A3U0 TCGA-EW-A424 
       19.99        34.55        19.96        22.09        17.49        23.51 
TCGA-GM-A2D9 TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A2DO TCGA-GM-A3NW TCGA-GM-A3NY 
       59.57       106.06       101.62        85.35       110.50        38.20 
TCGA-GM-A3XG TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2NL 
       43.73        66.38        72.03        13.55        18.12         2.60 
TCGA-JL-A3YX TCGA-LD-A66U TCGA-LD-A7W6 TCGA-LL-A440 TCGA-LL-A442 TCGA-LL-A50Y 
       11.57        21.24        13.28        24.95        10.95        25.05 
TCGA-LL-A5YL TCGA-LL-A5YN TCGA-LL-A5YP TCGA-LL-A6FP TCGA-LL-A6FQ TCGA-LL-A6FR 
       17.06        14.70        14.79        22.26         2.63        16.08 
TCGA-LL-A73Y TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5RU TCGA-OL-A5RV TCGA-OL-A5RX 
       15.68        22.39         2.10        40.08        34.92        28.87 
TCGA-OL-A66H TCGA-OL-A66J TCGA-OL-A66K TCGA-OL-A66L TCGA-OL-A66N TCGA-OL-A66P 
       26.70        65.62        41.92        42.77        26.04        14.07 
TCGA-OL-A6VO TCGA-OL-A6VQ TCGA-OL-A6VR TCGA-OL-A97C TCGA-PL-A8LX TCGA-PL-A8LY 
       28.21        19.73        40.11         8.91         0.16         0.26 
TCGA-PL-A8LZ TCGA-S3-A6ZG TCGA-S3-AA0Z TCGA-S3-AA11 TCGA-S3-AA12 TCGA-S3-AA14 
        9.93        13.12        16.80        13.84        15.35        14.96 
TCGA-S3-AA15 TCGA-XX-A899 TCGA-Z7-A8R5 
       13.84        15.35       108.07 

  DEL PEAK 33(17P12) MUTATED DEL PEAK 33(17P12) WILD-TYPE 
                        0.03                         0.03 
  DEL PEAK 33(17P12) MUTATED DEL PEAK 33(17P12) WILD-TYPE 
                      234.28                       220.90 
  DEL PEAK 33(17P12) MUTATED DEL PEAK 33(17P12) WILD-TYPE 
                       24.79                        23.51 
[1] "0.0 - 234.3 (24.8)" "0.0 - 220.9 (23.5)"
[1] "hr=" "1.1"
D62V2, continuous
                              vv
clus                           STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  DEL PEAK 33(17P12) MUTATED        53       45        2        2       203
  DEL PEAK 33(17P12) WILD-TYPE      36       36        6        1       150
                              vv
clus                           STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  DEL PEAK 33(17P12) MUTATED         156         1         94         15
  DEL PEAK 33(17P12) WILD-TYPE        89         1         56         14
                              vv
clus                           STAGE IIIC STAGE IV STAGE TIS STAGE X
  DEL PEAK 33(17P12) MUTATED           41       13         1       8
  DEL PEAK 33(17P12) WILD-TYPE         22        7         0       5
D62V3, multiclass
            clus
vv           DEL PEAK 33(17P12) MUTATED DEL PEAK 33(17P12) WILD-TYPE
  STAGE I                            53                           36
  STAGE IA                           45                           36
  STAGE IB                            2                            6
  STAGE II                            2                            1
  STAGE IIA                         203                          150
  STAGE IIB                         156                           89
  STAGE III                           1                            1
  STAGE IIIA                         94                           56
  STAGE IIIB                         15                           14
  STAGE IIIC                         41                           22
  STAGE IV                           13                            7
  STAGE TIS                           1                            0
  STAGE X                             8                            5
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                            T1  T2  T3  T4
  DEL PEAK 33(17P12) MUTATED   146 388  79  22
  DEL PEAK 33(17P12) WILD-TYPE 126 228  51  18
D62V4, multiclass
    clus
vv   DEL PEAK 33(17P12) MUTATED DEL PEAK 33(17P12) WILD-TYPE
  T1                        146                          126
  T2                        388                          228
  T3                         79                           51
  T4                         22                           18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                            N0  N1  N2  N3
  DEL PEAK 33(17P12) MUTATED   301 205  74  47
  DEL PEAK 33(17P12) WILD-TYPE 200 145  43  28
D62V5, multiclass
    clus
vv   DEL PEAK 33(17P12) MUTATED DEL PEAK 33(17P12) WILD-TYPE
  N0                        301                          200
  N1                        205                          145
  N2                         74                           43
  N3                         47                           28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D62V6, binary
                              cls
clus                             0   1
  DEL PEAK 33(17P12) MUTATED   532  14
  DEL PEAK 33(17P12) WILD-TYPE 347   7
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 33(17P12) MUTATED    532   14
  DEL PEAK 33(17P12) WILD-TYPE  347    7
   clus
vv  DEL PEAK 33(17P12) MUTATED DEL PEAK 33(17P12) WILD-TYPE
  0                        532                          347
  1                         14                            7
[1] 2 2
[1] FALSE
D62V7, binary
                              cls
clus                             0   1
  DEL PEAK 33(17P12) MUTATED   630   8
  DEL PEAK 33(17P12) WILD-TYPE 421   3
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 33(17P12) MUTATED    630    8
  DEL PEAK 33(17P12) WILD-TYPE  421    3
        clus
vv       DEL PEAK 33(17P12) MUTATED DEL PEAK 33(17P12) WILD-TYPE
  FEMALE                        630                          421
  MALE                            8                            3
[1] 2 2
[1] FALSE
                              vv
clus                           INFILTRATING CARCINOMA NOS
  DEL PEAK 33(17P12) MUTATED                            0
  DEL PEAK 33(17P12) WILD-TYPE                          1
                              vv
clus                           INFILTRATING DUCTAL CARCINOMA
  DEL PEAK 33(17P12) MUTATED                             482
  DEL PEAK 33(17P12) WILD-TYPE                           281
                              vv
clus                           INFILTRATING LOBULAR CARCINOMA
  DEL PEAK 33(17P12) MUTATED                               99
  DEL PEAK 33(17P12) WILD-TYPE                             93
                              vv
clus                           MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  DEL PEAK 33(17P12) MUTATED                     5                     2
  DEL PEAK 33(17P12) WILD-TYPE                   1                     2
                              vv
clus                           MIXED HISTOLOGY (PLEASE SPECIFY)
  DEL PEAK 33(17P12) MUTATED                                 18
  DEL PEAK 33(17P12) WILD-TYPE                               12
                              vv
clus                           MUCINOUS CARCINOMA OTHER  SPECIFY
  DEL PEAK 33(17P12) MUTATED                    6             25
  DEL PEAK 33(17P12) WILD-TYPE                 11             23
D62V8, multiclass
                                  clus
vv                                 DEL PEAK 33(17P12) MUTATED
  INFILTRATING CARCINOMA NOS                                0
  INFILTRATING DUCTAL CARCINOMA                           482
  INFILTRATING LOBULAR CARCINOMA                           99
  MEDULLARY CARCINOMA                                       5
  METAPLASTIC CARCINOMA                                     2
  MIXED HISTOLOGY (PLEASE SPECIFY)                         18
  MUCINOUS CARCINOMA                                        6
  OTHER  SPECIFY                                           25
                                  clus
vv                                 DEL PEAK 33(17P12) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                  1
  INFILTRATING DUCTAL CARCINOMA                             281
  INFILTRATING LOBULAR CARCINOMA                             93
  MEDULLARY CARCINOMA                                         1
  METAPLASTIC CARCINOMA                                       2
  MIXED HISTOLOGY (PLEASE SPECIFY)                           12
  MUCINOUS CARCINOMA                                         11
  OTHER  SPECIFY                                             23
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D62V9, binary
                              cls
clus                             0   1
  DEL PEAK 33(17P12) MUTATED   176 462
  DEL PEAK 33(17P12) WILD-TYPE 112 312
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 33(17P12) MUTATED    176  462
  DEL PEAK 33(17P12) WILD-TYPE  112  312
     clus
vv    DEL PEAK 33(17P12) MUTATED DEL PEAK 33(17P12) WILD-TYPE
  NO                         176                          112
  YES                        462                          312
[1] 2 2
[1] FALSE
D62V10, continuous
                              vv
clus                           AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 33(17P12) MUTATED                                  1    44
  DEL PEAK 33(17P12) WILD-TYPE                                0    16
                              vv
clus                           BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 33(17P12) MUTATED                         107   428
  DEL PEAK 33(17P12) WILD-TYPE                        63   308
D62V11, multiclass
                                  clus
vv                                 DEL PEAK 33(17P12) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                          1
  ASIAN                                                    44
  BLACK OR AFRICAN AMERICAN                               107
  WHITE                                                   428
                                  clus
vv                                 DEL PEAK 33(17P12) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                            0
  ASIAN                                                      16
  BLACK OR AFRICAN AMERICAN                                  63
  WHITE                                                     308
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D62V12, binary
                              cls
clus                             0   1
  DEL PEAK 33(17P12) MUTATED    22 520
  DEL PEAK 33(17P12) WILD-TYPE  16 338
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 33(17P12) MUTATED     22  520
  DEL PEAK 33(17P12) WILD-TYPE   16  338
                        clus
vv                       DEL PEAK 33(17P12) MUTATED
  HISPANIC OR LATINO                             22
  NOT HISPANIC OR LATINO                        520
                        clus
vv                       DEL PEAK 33(17P12) WILD-TYPE
  HISPANIC OR LATINO                               16
  NOT HISPANIC OR LATINO                          338
[1] 2 2
[1] FALSE

Clustering(63) Variable = DEL PEAK 34(17Q21.31) MUTATION ANALYSIS
D63V1, survival
                                 sevent
clus2                               0   1
  DEL PEAK 34(17Q21.31) MUTATED   310  46
  DEL PEAK 34(17Q21.31) WILD-TYPE 606  82
  DEL PEAK 34(17Q21.31) MUTATED DEL PEAK 34(17Q21.31) WILD-TYPE 
                            356                             688 
  DEL PEAK 34(17Q21.31) MUTATED DEL PEAK 34(17Q21.31) WILD-TYPE 
                             46                              82 
$`DEL PEAK 34(17Q21.31) MUTATED`
TCGA-3C-AALI TCGA-3C-AALJ TCGA-3C-AALK TCGA-A1-A0SI TCGA-A1-A0SJ TCGA-A1-A0SK 
      131.67        42.81        40.14        20.88        13.68        31.79 
TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SP TCGA-A2-A04P TCGA-A2-A04T TCGA-A2-A04W 
        7.96        39.32        19.20        18.02        73.84       101.98 
TCGA-A2-A04X TCGA-A2-A0CM TCGA-A2-A0CR TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0CX 
       55.43        24.79       107.93        98.99       107.93        56.81 
TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0EQ TCGA-A2-A0SW TCGA-A2-A0SX TCGA-A2-A0SY 
       67.33        34.55        79.76        44.88        50.43        44.28 
TCGA-A2-A0T3 TCGA-A2-A0YE TCGA-A2-A0YG TCGA-A2-A0YJ TCGA-A2-A0YK TCGA-A2-A0YL 
       49.84        18.21        21.90        18.61        19.33        48.46 
TCGA-A2-A0YT TCGA-A2-A1FW TCGA-A2-A1G1 TCGA-A2-A259 TCGA-A2-A25A TCGA-A2-A25B 
       23.77        17.36        19.20        52.47       107.70        42.44 
TCGA-A2-A3XT TCGA-A2-A3XY TCGA-A2-A3Y0 TCGA-A2-A4RX TCGA-A2-A4S1 TCGA-A7-A0CG 
       83.01        34.98        38.37        24.39        26.96        34.29 
TCGA-A7-A0CJ TCGA-A7-A0DA TCGA-A7-A13D TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26G 
       30.61        35.67        31.73        31.36        24.26        23.74 
TCGA-A7-A26I TCGA-A7-A426 TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF TCGA-A7-A56D 
       21.73        11.97        14.50        21.17        17.92        14.73 
TCGA-A7-A6VV TCGA-A7-A6VW TCGA-A7-A6VX TCGA-A7-A6VY TCGA-A8-A06Q TCGA-A8-A06R 
       10.29         9.37        10.42         8.75         1.02        17.98 
TCGA-A8-A06X TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A079 TCGA-A8-A07B TCGA-A8-A07E 
       31.00        17.03        53.98         9.01        43.00        19.99 
TCGA-A8-A07I TCGA-A8-A07L TCGA-A8-A084 TCGA-A8-A08B TCGA-A8-A08I TCGA-A8-A08J 
       14.01        32.05        15.06        38.01        12.00        37.05 
TCGA-A8-A08L TCGA-A8-A08X TCGA-A8-A09C TCGA-A8-A09D TCGA-A8-A09I TCGA-A8-A09K 
        9.99        43.00         1.02        50.04        45.07        29.98 
TCGA-A8-A09N TCGA-A8-A09X TCGA-A8-A0A7 TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23H 
        1.02        14.01         0.99        38.04         0.95         5.72 
TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2QH TCGA-AC-A3BB TCGA-AC-A3W5 
        1.48        38.53        99.35        33.04        32.45        16.57 
TCGA-AC-A3W6 TCGA-AC-A62Y TCGA-AC-A6IX TCGA-AC-A8OS TCGA-AN-A046 TCGA-AN-A04A 
       19.79        17.42        12.26         2.30         0.33         2.96 
TCGA-AN-A0AL TCGA-AN-A0AM TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0FJ 
        6.51         0.16         0.33         0.33         6.44         7.96 
TCGA-AN-A0FL TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FY TCGA-AN-A0XR 
        7.59         7.04         0.33         0.36         0.33         0.33 
TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AN-A0XW TCGA-AO-A03L TCGA-AO-A03M TCGA-AO-A03N 
        0.33         0.33         5.59        80.28        61.35        66.77 
TCGA-AO-A03V TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J5 TCGA-AO-A0JA TCGA-AO-A0JB 
       29.13        32.78        21.40        26.04        21.53        50.70 
TCGA-AO-A0JD TCGA-AO-A0JG TCGA-AO-A0JL TCGA-AO-A0JM TCGA-AO-A129 TCGA-AO-A12D 
       72.00        26.24        55.33        71.80       108.03        64.04 
TCGA-AO-A1KR TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A0Y5 TCGA-AQ-A54N TCGA-AQ-A54O 
       70.39        26.93       130.09         5.65         2.56        32.91 
TCGA-AR-A0TP TCGA-AR-A0TQ TCGA-AR-A0TT TCGA-AR-A0TX TCGA-AR-A0TY TCGA-AR-A0U1 
      111.32        73.64        86.66        64.83        55.86       101.95 
TCGA-AR-A0U3 TCGA-AR-A0U4 TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AN 
      114.02        85.97        75.55        61.84        52.77        43.73 
TCGA-AR-A1AP TCGA-AR-A1AQ TCGA-AR-A1AR TCGA-AR-A1AY TCGA-AR-A24Q TCGA-AR-A24R 
       39.98        43.07        17.23        33.73       104.28        87.22 
TCGA-AR-A24S TCGA-AR-A24U TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A256 TCGA-B6-A0I9 
       97.84        53.36        73.18        72.76        93.83        12.13 
TCGA-B6-A0IB TCGA-B6-A0IE TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IQ TCGA-B6-A0RE 
      129.57        65.72       112.37       176.98       140.88       211.56 
TCGA-B6-A0RH TCGA-B6-A0RU TCGA-B6-A0RV TCGA-B6-A1KF TCGA-B6-A1KN TCGA-B6-A408 
      189.01       131.21       157.41       101.52       139.17        68.12 
TCGA-BH-A0AV TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0B0 TCGA-BH-A0B5 TCGA-BH-A0B6 
       59.84        20.45        25.55        46.95        48.36        56.94 
TCGA-BH-A0B7 TCGA-BH-A0B9 TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BF TCGA-BH-A0BP 
       56.98        51.68        37.22        32.02        25.71        48.69 
TCGA-BH-A0BR TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0DG TCGA-BH-A0DK TCGA-BH-A0DL 
       53.69        41.75        44.02        23.44        13.91        48.23 
TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E2 TCGA-BH-A0E6 TCGA-BH-A0E9 
       47.41        16.27         4.41        14.30         9.63        46.19 
TCGA-BH-A0EE TCGA-BH-A0HB TCGA-BH-A0HP TCGA-BH-A0HY TCGA-BH-A0W7 TCGA-BH-A0WA 
       31.00        26.50        13.61        50.79        44.81        23.05 
TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18P TCGA-BH-A18Q 
        8.81         2.01         7.23        20.12        30.28        55.63 
TCGA-BH-A18R TCGA-BH-A1EN TCGA-BH-A1ES TCGA-BH-A1EU TCGA-BH-A1EY TCGA-BH-A1F6 
       37.55        69.93       113.82        42.28        17.69        97.48 
TCGA-BH-A1FD TCGA-BH-A1FH TCGA-BH-A1FM TCGA-BH-A1FU TCGA-BH-A203 TCGA-BH-A208 
       33.17        36.92        45.63        72.07        38.60        57.83 
TCGA-BH-A209 TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-C8-A12L TCGA-C8-A12M TCGA-C8-A12P 
      130.16        18.64        23.51        11.93        11.77        11.77 
TCGA-C8-A12Q TCGA-C8-A12U TCGA-C8-A12Z TCGA-C8-A131 TCGA-C8-A132 TCGA-C8-A135 
       12.66        12.66         0.39         2.24         1.87         1.05 
TCGA-C8-A137 TCGA-C8-A138 TCGA-C8-A1HF TCGA-C8-A1HI TCGA-C8-A1HJ TCGA-C8-A1HK 
        4.11         4.08        10.92        11.28         0.16        12.03 
TCGA-C8-A1HL TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A26X TCGA-C8-A273 TCGA-C8-A275 
       10.42         0.30         0.23         0.36         9.67         0.03 
TCGA-C8-A278 TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A8HP TCGA-D8-A13Y TCGA-D8-A13Z 
        9.50         0.99         0.03        13.02        11.90        20.88 
TCGA-D8-A140 TCGA-D8-A145 TCGA-D8-A146 TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JA 
       13.25        13.48        21.14        14.17        17.49        16.50 
TCGA-D8-A1JG TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1X5 
       12.03        20.09        20.12        19.40        20.38        18.58 
TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XQ TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1XZ 
       21.83        14.50        16.41         6.35        12.99        15.32 
TCGA-D8-A27F TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27T 
       16.04        13.45        13.05        13.48         4.80        13.08 
TCGA-D8-A27V TCGA-E2-A14Q TCGA-E2-A14R TCGA-E2-A14V TCGA-E2-A14X TCGA-E2-A14Y 
       12.53        38.24        38.60        34.26        31.96        28.60 
TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A155 TCGA-E2-A158 TCGA-E2-A159 
       18.51        25.41        27.12        21.04        14.79        25.05 
TCGA-E2-A15E TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15M TCGA-E2-A1AZ TCGA-E2-A1B0 
       20.71        18.21        12.92        11.05        60.53        53.62 
TCGA-E2-A1B1 TCGA-E2-A1B5 TCGA-E2-A1II TCGA-E2-A1L7 TCGA-E2-A1LB TCGA-E2-A1LE 
       53.03        32.35        33.70        27.42        40.47        28.90 
TCGA-E2-A1LL TCGA-E2-A2P5 TCGA-E2-A573 TCGA-E2-A9RU TCGA-E9-A1N5 TCGA-E9-A1N6 
       43.04        16.93        34.92        12.85        36.82        13.48 
TCGA-E9-A1N8 TCGA-E9-A1NA TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NF TCGA-E9-A1RA 
       12.00        36.56        39.55        12.59        35.24        32.09 
TCGA-E9-A1RB TCGA-E9-A1RF TCGA-E9-A226 TCGA-E9-A22A TCGA-E9-A22D TCGA-E9-A22E 
       32.09         6.58        34.13        39.09        41.03        12.89 
TCGA-E9-A22G TCGA-E9-A244 TCGA-E9-A3QA TCGA-E9-A3X8 TCGA-E9-A5FL TCGA-EW-A1J1 
       23.51         0.69        30.18        15.72         0.79        18.90 
TCGA-EW-A1OX TCGA-EW-A1OZ TCGA-EW-A1P4 TCGA-EW-A1P8 TCGA-EW-A1PA TCGA-EW-A1PF 
       29.95        40.41        29.82         7.86        18.90        14.43 
TCGA-EW-A1PH TCGA-EW-A2FV TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2DA TCGA-GM-A2DB 
       19.96        25.91         7.40       109.87       216.76        79.10 
TCGA-GM-A2DD TCGA-GM-A2DI TCGA-GM-A2DL TCGA-HN-A2NL TCGA-JL-A3YW TCGA-LD-A74U 
       75.02        85.15       115.69         2.60        11.84        13.22 
TCGA-LD-A7W5 TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LL-A6FP TCGA-LL-A73Z TCGA-LL-A7SZ 
        7.10        14.70        14.47        22.26         7.46        14.70 
TCGA-OL-A5D6 TCGA-OL-A5D7 TCGA-OL-A5RW TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66I 
       36.30        58.52        36.36        22.32        20.38        23.47 
TCGA-OL-A66O TCGA-PE-A5DD TCGA-PE-A5DE TCGA-S3-AA14 TCGA-UL-AAZ6 TCGA-UU-A93S 
       17.36        64.21        86.96        14.96        17.03         3.81 
TCGA-WT-AB44 TCGA-XX-A89A 
       29.03        16.04 

$`DEL PEAK 34(17Q21.31) WILD-TYPE`
TCGA-3C-AAAU TCGA-4H-AAAK TCGA-5L-AAT0 TCGA-5L-AAT1 TCGA-5T-A9QA TCGA-A1-A0SB 
      129.14        11.44        48.56        48.36         9.96         8.52 
TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SO 
       14.37        43.43        48.10        14.27        47.24        28.01 
TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04U TCGA-A2-A04V 
       18.21       104.81        78.41       121.94        87.25        63.12 
TCGA-A2-A04Y TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CQ 
       36.13       136.73        99.12       114.81        92.48        88.60 
TCGA-A2-A0CS TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0D4 
       75.55        75.25         5.19        33.76        61.58        25.22 
TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0ER TCGA-A2-A0ES 
      101.72       134.40        80.28       107.61        74.40        72.00 
TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0EY 
       35.05        34.29        31.82        61.94        24.72        63.29 
TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T2 
       99.19        54.64        27.12        17.52        17.13         8.38 
TCGA-A2-A0T4 TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD 
       20.52        17.46        18.90        20.75        32.55        25.28 
TCGA-A2-A0YF TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YM TCGA-A2-A1FV TCGA-A2-A1FX 
       50.47        21.67        49.48        31.73        23.47        60.72 
TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G4 TCGA-A2-A1G6 TCGA-A2-A25C TCGA-A2-A25D 
       22.45        20.25        19.56        16.47        17.19        18.15 
TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD TCGA-A2-A3XS TCGA-A2-A3XU 
      105.34        10.59        20.88        39.65        33.93        29.98 
TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX TCGA-A2-A3XZ TCGA-A2-A4RW TCGA-A2-A4RY 
       32.75        49.48        47.31        50.37         7.30        21.30 
TCGA-A2-A4S0 TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CD TCGA-A7-A0CE TCGA-A7-A0CH 
       23.21        21.14        21.90        38.30        35.31        35.47 
TCGA-A7-A0D9 TCGA-A7-A0DB TCGA-A7-A0DC TCGA-A7-A13E TCGA-A7-A13F TCGA-A7-A13G 
       37.45        33.11        29.79        20.19        25.15        23.61 
TCGA-A7-A13H TCGA-A7-A26H TCGA-A7-A26J TCGA-A7-A2KD TCGA-A7-A3IY TCGA-A7-A3IZ 
       29.56        23.80        20.61        22.32        11.34        10.59 
TCGA-A7-A3J0 TCGA-A7-A3J1 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A4SA TCGA-A7-A4SB 
       10.29        11.28        13.41        14.70        14.93        13.74 
TCGA-A7-A5ZV TCGA-A7-A5ZW TCGA-A7-A5ZX TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06T 
       12.10        10.72        11.05        13.02        13.02        53.06 
TCGA-A8-A06U TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07J 
       29.03        26.01         1.02        18.97        18.97        12.00 
TCGA-A8-A07O TCGA-A8-A07P TCGA-A8-A07R TCGA-A8-A07S TCGA-A8-A07U TCGA-A8-A07W 
        9.99        10.98         8.98         7.99        24.99         9.99 
TCGA-A8-A07Z TCGA-A8-A082 TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08C 
       45.07        18.05        36.95        13.02         0.99        28.96 
TCGA-A8-A08F TCGA-A8-A08G TCGA-A8-A08O TCGA-A8-A08P TCGA-A8-A08R TCGA-A8-A08S 
       33.01        19.96        31.00        31.00         0.99        33.01 
TCGA-A8-A08T TCGA-A8-A08Z TCGA-A8-A091 TCGA-A8-A092 TCGA-A8-A093 TCGA-A8-A095 
      112.08        40.01        33.01        30.97        17.95        41.98 
TCGA-A8-A097 TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09E TCGA-A8-A09M 
       12.00         9.99         9.99        12.00        49.05        33.07 
TCGA-A8-A09Q TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A0A1 
       25.02         8.98        19.04        15.02         0.99        12.00 
TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-AC-A23E 
       19.04        13.02        21.04        27.02        17.03         2.37 
TCGA-AC-A23G TCGA-AC-A2FB TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM 
       10.85        40.57        55.43        36.99        38.79        26.04 
TCGA-AC-A2FO TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QP 
       50.70         0.92         2.27        16.31        14.83        22.19 
TCGA-AC-A3TN TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A5XS TCGA-AC-A62V TCGA-AC-A62X 
       14.99        23.24        24.79         1.55        11.44        13.71 
TCGA-AC-A6IV TCGA-AC-A6IW TCGA-AC-A6NO TCGA-AC-A7VB TCGA-AC-A7VC TCGA-AC-A8OP 
       18.67        13.58         1.68         8.22         0.03        20.19 
TCGA-AC-A8OQ TCGA-AC-A8OR TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A041 TCGA-AN-A049 
        1.12         1.32         0.33         0.33         0.23         0.62 
TCGA-AN-A04C TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AK TCGA-AN-A0AR TCGA-AN-A0FF 
        1.78         1.71         9.96         7.36         0.33         5.65 
TCGA-AN-A0FK TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FX TCGA-AN-A0FZ TCGA-AN-A0XL 
        7.00         7.17         6.28         0.33         0.33         0.33 
TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XS TCGA-AN-A0XV TCGA-AO-A03O 
        0.33        12.33         0.30         0.33         5.33        81.63 
TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A0J4 TCGA-AO-A0J6 
       95.70        68.75        47.87        58.95        52.18        37.48 
TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JC TCGA-AO-A0JE TCGA-AO-A0JF 
       20.32        22.36        53.03        50.86        76.77        21.37 
TCGA-AO-A0JI TCGA-AO-A0JJ TCGA-AO-A124 TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 
       50.24        62.04       102.58        99.25       108.72       106.78 
TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12E TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A12H 
       90.58        98.27        57.30        48.36        41.62        28.37 
TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KQ TCGA-AO-A1KS TCGA-AO-A1KT TCGA-AQ-A04H 
       14.73        82.62        61.87         0.53        17.79        24.79 
TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AQ-A7U7 TCGA-AR-A0TR TCGA-AR-A0TS TCGA-AR-A0TV 
       15.62        32.52        19.20         5.26        74.79        42.35 
TCGA-AR-A0TW TCGA-AR-A0TZ TCGA-AR-A0U0 TCGA-AR-A0U2 TCGA-AR-A1AK TCGA-AR-A1AL 
       98.93       107.24        65.36        83.87        51.25        48.82 
TCGA-AR-A1AM TCGA-AR-A1AO TCGA-AR-A1AS TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A1AW 
       76.11        43.56        37.81        76.21        61.28        63.62 
TCGA-AR-A1AX TCGA-AR-A24H TCGA-AR-A24K TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24N 
       62.14       160.90        50.89        94.22        96.89        78.51 
TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24T TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A24X 
       84.20         2.76        76.01        85.35        50.96        83.77 
TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A251 TCGA-AR-A255 TCGA-AR-A2LE TCGA-AR-A2LH 
       79.00        89.00        78.48        58.92       143.21        20.25 
TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LL TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO 
       62.86        54.21        66.15        52.11        38.17        39.39 
TCGA-AR-A2LQ TCGA-AR-A2LR TCGA-AR-A5QM TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ 
       40.54        20.38        54.74        16.04        20.45        10.59 
TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0IA TCGA-B6-A0IC TCGA-B6-A0IG 
       77.62       143.38       149.59       220.90        50.70       146.50 
TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IO TCGA-B6-A0IP TCGA-B6-A0RG 
       18.77       126.12        84.59       110.14       110.93        68.45 
TCGA-B6-A0RI TCGA-B6-A0RL TCGA-B6-A0RM TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RP 
      234.28        81.17        78.02       172.96       162.05       102.77 
TCGA-B6-A0RQ TCGA-B6-A0RS TCGA-B6-A0RT TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WV 
      140.48       100.70        89.46        97.48       188.68        79.63 
TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WY TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 
       18.35        21.47       113.79       129.57       129.70       186.48 
TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KC TCGA-B6-A1KI TCGA-B6-A2IU 
       28.27        68.94        58.88        43.59        73.51       170.17 
TCGA-B6-A401 TCGA-B6-A402 TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AU TCGA-BH-A0AZ 
       85.35        74.99       103.63        71.15        24.53        28.50 
TCGA-BH-A0B2 TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0BD TCGA-BH-A0BG TCGA-BH-A0BJ 
       40.83        39.55        39.16        18.21        24.85        21.70 
TCGA-BH-A0BL TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BQ TCGA-BH-A0BS TCGA-BH-A0BT 
       44.05        61.68        35.67        27.19        53.95        45.57 
TCGA-BH-A0BV TCGA-BH-A0BW TCGA-BH-A0BZ TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DD 
       49.94        11.67        49.05        48.13        42.90        45.83 
TCGA-BH-A0DE TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DO TCGA-BH-A0DP TCGA-BH-A0DQ 
       31.17        38.01        22.13        17.26        15.65         3.22 
TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0E1 TCGA-BH-A0E7 TCGA-BH-A0EA 
        2.56        38.47        67.86        15.68        44.81        32.58 
TCGA-BH-A0EB TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 
       24.49        24.43        30.35        10.78        15.16        37.78 
TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H7 TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0HI 
       35.51        24.56        23.08        41.00        52.96        20.38 
TCGA-BH-A0HK TCGA-BH-A0HO TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HX 
        5.85         2.50        36.85        12.89        51.32        27.25 
TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A18K TCGA-BH-A18L 
        5.59        23.93        24.95        42.35        90.84        26.66 
TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18S TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A18V 
       72.56        37.74        66.05         7.36        51.39        51.16 
TCGA-BH-A1EO TCGA-BH-A1ET TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1EX TCGA-BH-A1F0 
       91.99        82.85        12.00        55.69        49.58        25.81 
TCGA-BH-A1F2 TCGA-BH-A1F5 TCGA-BH-A1F8 TCGA-BH-A1FB TCGA-BH-A1FC TCGA-BH-A1FE 
       31.53        89.16        24.66       120.62       114.15        74.73 
TCGA-BH-A1FG TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FN TCGA-BH-A1FR TCGA-BH-A201 
      122.89        63.35        55.00        72.07       144.59        28.14 
TCGA-BH-A202 TCGA-BH-A204 TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42T 
       26.14        83.31        10.65         6.44        20.12        10.52 
TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A6R8 TCGA-BH-A6R9 TCGA-BH-A8FY TCGA-BH-A8FZ 
      109.28         8.94         9.63         5.26         9.70        18.87 
TCGA-BH-A8G0 TCGA-BH-AB28 TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12V TCGA-C8-A12W 
       21.76         9.44        11.77        12.66        12.66        12.66 
TCGA-C8-A12X TCGA-C8-A130 TCGA-C8-A134 TCGA-C8-A1HE TCGA-C8-A1HG TCGA-C8-A1HM 
       12.66         3.16         1.12        12.33        11.34         2.30 
TCGA-C8-A1HN TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A274 TCGA-C8-A27A TCGA-C8-A3M8 
        3.25         0.43         8.28         9.53        12.20         0.23 
TCGA-C8-A8HQ TCGA-C8-A8HR TCGA-C8-A9FZ TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A143 
       12.49        13.41        19.46        20.58        13.97        14.17 
TCGA-D8-A147 TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JF 
       19.20        18.71        15.78        18.15        18.90        12.03 
TCGA-D8-A1JH TCGA-D8-A1JI TCGA-D8-A1JL TCGA-D8-A1JP TCGA-D8-A1JS TCGA-D8-A1JT 
       14.01        18.97        20.09        21.01        12.20        13.32 
TCGA-D8-A1JU TCGA-D8-A1X6 TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XA 
       14.70        17.79        16.73        25.74        23.90        27.58 
TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XD TCGA-D8-A1XF TCGA-D8-A1XG TCGA-D8-A1XL 
       18.15        12.39        17.16        15.22        14.73        19.92 
TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XV TCGA-D8-A1XW 
       17.69        15.55        15.85        16.31        15.16        12.66 
TCGA-D8-A1XY TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 TCGA-D8-A1Y3 TCGA-D8-A27E 
       16.54        15.52         9.93        14.24        14.14        17.42 
TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27P TCGA-D8-A27R TCGA-D8-A27W 
       14.43         9.44        16.41         0.76        10.09        12.26 
TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-D8-A73U TCGA-D8-A73W TCGA-D8-A73X 
       33.37        18.51        21.67        16.18         8.02        12.10 
TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10B 
       43.00        34.42        27.52        46.59        40.41        37.51 
TCGA-E2-A10C TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P 
       40.11        28.44        28.87        47.15        44.68        40.96 
TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14W TCGA-E2-A153 TCGA-E2-A154 
       33.17        33.30        43.33        32.02        23.24        19.43 
TCGA-E2-A156 TCGA-E2-A15A TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15F TCGA-E2-A15I 
       23.87        23.34        22.82        17.29        21.63        17.42 
TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15O TCGA-E2-A15P TCGA-E2-A15R 
       19.40         9.04        20.58        13.02        19.56        17.06 
TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1B4 TCGA-E2-A1B6 TCGA-E2-A1BC TCGA-E2-A1BD 
       14.07        14.99        33.01        28.50        16.47        17.10 
TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1IH TCGA-E2-A1IJ TCGA-E2-A1IK 
       38.30        37.41        32.78        33.73        28.44        22.65 
TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IO TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L8 
        3.88        22.19        20.98        11.08        54.18        39.62 
TCGA-E2-A1L9 TCGA-E2-A1LA TCGA-E2-A1LG TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK 
       19.66        24.59        18.87       106.75       102.61         8.75 
TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A574 TCGA-E2-A576 
        5.52        15.72         8.28        30.61        26.56        34.29 
TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N9 TCGA-E9-A1NE TCGA-E9-A1NG TCGA-E9-A1NI 
       34.82        32.88        13.12        35.77        25.84         9.86 
TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R5 
       11.90        28.27        34.95         2.56         6.12         3.02 
TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RC TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RG 
        2.76        21.21        40.24         1.12        34.65        21.27 
TCGA-E9-A1RH TCGA-E9-A1RI TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22B 
       34.59        35.64        32.05        12.53        13.32        22.75 
TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A247 TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A 
       20.71        17.06        27.22         1.94         7.13        24.56 
TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A54X 
        0.72        29.72         0.76        26.07        18.41        12.33 
TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5UO TCGA-E9-A5UP TCGA-E9-A6HE TCGA-EW-A1IW 
       23.84        14.70        13.81        14.40        15.39        12.20 
TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J5 
       39.72         8.48        18.21        13.25        16.57        15.68 
TCGA-EW-A1J6 TCGA-EW-A1OV TCGA-EW-A1OW TCGA-EW-A1OY TCGA-EW-A1P0 TCGA-EW-A1P1 
       28.77        25.94        22.82        29.85        41.13        39.78 
TCGA-EW-A1P3 TCGA-EW-A1P5 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1PB TCGA-EW-A1PC 
       52.96        23.11        18.48        30.08        19.99         6.15 
TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PG TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FW 
       13.94        10.52        34.55        55.00        52.73        22.09 
TCGA-EW-A3E8 TCGA-EW-A3U0 TCGA-EW-A423 TCGA-EW-A424 TCGA-GM-A2D9 TCGA-GM-A2DC 
       34.03        17.49        10.16        23.51        59.57        83.34 
TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A2DK TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A2DO 
       70.85        72.10        86.96       106.06       101.62        85.35 
TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XL TCGA-GM-A3XN TCGA-GM-A4E0 
      110.50        38.20        43.73        69.30        66.38        72.03 
TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2OB TCGA-JL-A3YX TCGA-LD-A66U TCGA-LD-A7W6 
       13.55        18.12        62.43        11.57        21.24        13.28 
TCGA-LD-A9QF TCGA-LL-A440 TCGA-LL-A441 TCGA-LL-A442 TCGA-LL-A50Y TCGA-LL-A5YL 
       10.62        24.95        11.44        10.95        25.05        17.06 
TCGA-LL-A5YM TCGA-LL-A5YP TCGA-LL-A6FQ TCGA-LL-A6FR TCGA-LL-A73Y TCGA-LL-A740 
       15.32        14.79         2.63        16.08        15.68        14.50 
TCGA-LL-A7T0 TCGA-LL-A8F5 TCGA-LL-A9Q3 TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 
       12.36        14.73        14.07        27.91        22.39         2.10 
TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RU TCGA-OL-A5RV TCGA-OL-A5RX TCGA-OL-A5RY 
       31.99        58.62        40.08        34.92        28.87        24.72 
TCGA-OL-A66H TCGA-OL-A66J TCGA-OL-A66K TCGA-OL-A66L TCGA-OL-A66N TCGA-OL-A66P 
       26.70        65.62        41.92        42.77        26.04        14.07 
TCGA-OL-A6VO TCGA-OL-A6VQ TCGA-OL-A6VR TCGA-OL-A97C TCGA-PE-A5DC TCGA-PL-A8LX 
       28.21        19.73        40.11         8.91        47.01         0.16 
TCGA-PL-A8LY TCGA-PL-A8LZ TCGA-S3-A6ZF TCGA-S3-A6ZG TCGA-S3-A6ZH TCGA-S3-AA0Z 
        0.26         9.93        16.50        13.12        16.93        16.80 
TCGA-S3-AA10 TCGA-S3-AA11 TCGA-S3-AA12 TCGA-S3-AA15 TCGA-S3-AA17 TCGA-W8-A86G 
       15.39        13.84        15.35        13.84        13.94        11.41 
TCGA-WT-AB41 TCGA-XX-A899 TCGA-Z7-A8R5 TCGA-Z7-A8R6 
       52.96        15.35       108.07       107.05 

  DEL PEAK 34(17Q21.31) MUTATED DEL PEAK 34(17Q21.31) WILD-TYPE 
                           0.03                            0.03 
  DEL PEAK 34(17Q21.31) MUTATED DEL PEAK 34(17Q21.31) WILD-TYPE 
                         216.76                          234.28 
  DEL PEAK 34(17Q21.31) MUTATED DEL PEAK 34(17Q21.31) WILD-TYPE 
                         24.590                          24.545 
[1] "0.0 - 216.8 (24.6)" "0.0 - 234.3 (24.5)"
[1] "hr=" "1.1"
D63V2, continuous
                                 vv
clus                              STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  DEL PEAK 34(17Q21.31) MUTATED        29       22        2        0       125
  DEL PEAK 34(17Q21.31) WILD-TYPE      60       59        6        3       228
                                 vv
clus                              STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  DEL PEAK 34(17Q21.31) MUTATED          82         0         56          6
  DEL PEAK 34(17Q21.31) WILD-TYPE       163         2         94         23
                                 vv
clus                              STAGE IIIC STAGE IV STAGE TIS STAGE X
  DEL PEAK 34(17Q21.31) MUTATED           23       10         1       3
  DEL PEAK 34(17Q21.31) WILD-TYPE         40       10         0      10
D63V3, multiclass
            clus
vv           DEL PEAK 34(17Q21.31) MUTATED DEL PEAK 34(17Q21.31) WILD-TYPE
  STAGE I                               29                              60
  STAGE IA                              22                              59
  STAGE IB                               2                               6
  STAGE II                               0                               3
  STAGE IIA                            125                             228
  STAGE IIB                             82                             163
  STAGE III                              0                               2
  STAGE IIIA                            56                              94
  STAGE IIIB                             6                              23
  STAGE IIIC                            23                              40
  STAGE IV                              10                              10
  STAGE TIS                              1                               0
  STAGE X                                3                              10
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                               T1  T2  T3  T4
  DEL PEAK 34(17Q21.31) MUTATED    76 226  44  14
  DEL PEAK 34(17Q21.31) WILD-TYPE 196 390  86  26
D63V4, multiclass
    clus
vv   DEL PEAK 34(17Q21.31) MUTATED DEL PEAK 34(17Q21.31) WILD-TYPE
  T1                            76                             196
  T2                           226                             390
  T3                            44                              86
  T4                            14                              26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                               N0  N1  N2  N3
  DEL PEAK 34(17Q21.31) MUTATED   170 108  50  28
  DEL PEAK 34(17Q21.31) WILD-TYPE 331 242  67  47
D63V5, multiclass
    clus
vv   DEL PEAK 34(17Q21.31) MUTATED DEL PEAK 34(17Q21.31) WILD-TYPE
  N0                           170                             331
  N1                           108                             242
  N2                            50                              67
  N3                            28                              47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D63V6, binary
                                 cls
clus                                0   1
  DEL PEAK 34(17Q21.31) MUTATED   306  10
  DEL PEAK 34(17Q21.31) WILD-TYPE 573  11
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 34(17Q21.31) MUTATED    306   10
  DEL PEAK 34(17Q21.31) WILD-TYPE  573   11
   clus
vv  DEL PEAK 34(17Q21.31) MUTATED DEL PEAK 34(17Q21.31) WILD-TYPE
  0                           306                             573
  1                            10                              11
[1] 2 2
[1] FALSE
D63V7, binary
                                 cls
clus                                0   1
  DEL PEAK 34(17Q21.31) MUTATED   360   2
  DEL PEAK 34(17Q21.31) WILD-TYPE 691   9
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 34(17Q21.31) MUTATED    360    2
  DEL PEAK 34(17Q21.31) WILD-TYPE  691    9
        clus
vv       DEL PEAK 34(17Q21.31) MUTATED DEL PEAK 34(17Q21.31) WILD-TYPE
  FEMALE                           360                             691
  MALE                               2                               9
[1] 2 2
[1] FALSE
                                 vv
clus                              INFILTRATING CARCINOMA NOS
  DEL PEAK 34(17Q21.31) MUTATED                            0
  DEL PEAK 34(17Q21.31) WILD-TYPE                          1
                                 vv
clus                              INFILTRATING DUCTAL CARCINOMA
  DEL PEAK 34(17Q21.31) MUTATED                             290
  DEL PEAK 34(17Q21.31) WILD-TYPE                           473
                                 vv
clus                              INFILTRATING LOBULAR CARCINOMA
  DEL PEAK 34(17Q21.31) MUTATED                               37
  DEL PEAK 34(17Q21.31) WILD-TYPE                            155
                                 vv
clus                              MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  DEL PEAK 34(17Q21.31) MUTATED                     4                     2
  DEL PEAK 34(17Q21.31) WILD-TYPE                   2                     2
                                 vv
clus                              MIXED HISTOLOGY (PLEASE SPECIFY)
  DEL PEAK 34(17Q21.31) MUTATED                                 11
  DEL PEAK 34(17Q21.31) WILD-TYPE                               19
                                 vv
clus                              MUCINOUS CARCINOMA OTHER  SPECIFY
  DEL PEAK 34(17Q21.31) MUTATED                    1             16
  DEL PEAK 34(17Q21.31) WILD-TYPE                 16             32
D63V8, multiclass
                                  clus
vv                                 DEL PEAK 34(17Q21.31) MUTATED
  INFILTRATING CARCINOMA NOS                                   0
  INFILTRATING DUCTAL CARCINOMA                              290
  INFILTRATING LOBULAR CARCINOMA                              37
  MEDULLARY CARCINOMA                                          4
  METAPLASTIC CARCINOMA                                        2
  MIXED HISTOLOGY (PLEASE SPECIFY)                            11
  MUCINOUS CARCINOMA                                           1
  OTHER  SPECIFY                                              16
                                  clus
vv                                 DEL PEAK 34(17Q21.31) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                     1
  INFILTRATING DUCTAL CARCINOMA                                473
  INFILTRATING LOBULAR CARCINOMA                               155
  MEDULLARY CARCINOMA                                            2
  METAPLASTIC CARCINOMA                                          2
  MIXED HISTOLOGY (PLEASE SPECIFY)                              19
  MUCINOUS CARCINOMA                                            16
  OTHER  SPECIFY                                                32
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D63V9, binary
                                 cls
clus                                0   1
  DEL PEAK 34(17Q21.31) MUTATED   101 261
  DEL PEAK 34(17Q21.31) WILD-TYPE 187 513
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 34(17Q21.31) MUTATED    101  261
  DEL PEAK 34(17Q21.31) WILD-TYPE  187  513
     clus
vv    DEL PEAK 34(17Q21.31) MUTATED DEL PEAK 34(17Q21.31) WILD-TYPE
  NO                            101                             187
  YES                           261                             513
[1] 2 2
[1] FALSE
D63V10, continuous
                                 vv
clus                              AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 34(17Q21.31) MUTATED                                  0    34
  DEL PEAK 34(17Q21.31) WILD-TYPE                                1    26
                                 vv
clus                              BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 34(17Q21.31) MUTATED                          67   232
  DEL PEAK 34(17Q21.31) WILD-TYPE                       103   504
D63V11, multiclass
                                  clus
vv                                 DEL PEAK 34(17Q21.31) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                             0
  ASIAN                                                       34
  BLACK OR AFRICAN AMERICAN                                   67
  WHITE                                                      232
                                  clus
vv                                 DEL PEAK 34(17Q21.31) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                               1
  ASIAN                                                         26
  BLACK OR AFRICAN AMERICAN                                    103
  WHITE                                                        504
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D63V12, binary
                                 cls
clus                                0   1
  DEL PEAK 34(17Q21.31) MUTATED    12 292
  DEL PEAK 34(17Q21.31) WILD-TYPE  26 566
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 34(17Q21.31) MUTATED     12  292
  DEL PEAK 34(17Q21.31) WILD-TYPE   26  566
                        clus
vv                       DEL PEAK 34(17Q21.31) MUTATED
  HISPANIC OR LATINO                                12
  NOT HISPANIC OR LATINO                           292
                        clus
vv                       DEL PEAK 34(17Q21.31) WILD-TYPE
  HISPANIC OR LATINO                                  26
  NOT HISPANIC OR LATINO                             566
[1] 2 2
[1] FALSE

Clustering(64) Variable = DEL PEAK 35(18Q23) MUTATION ANALYSIS
D64V1, survival
                              sevent
clus2                            0   1
  DEL PEAK 35(18Q23) MUTATED   295  45
  DEL PEAK 35(18Q23) WILD-TYPE 621  83
  DEL PEAK 35(18Q23) MUTATED DEL PEAK 35(18Q23) WILD-TYPE 
                         340                          704 
  DEL PEAK 35(18Q23) MUTATED DEL PEAK 35(18Q23) WILD-TYPE 
                          45                           83 
$`DEL PEAK 35(18Q23) MUTATED`
TCGA-3C-AALI TCGA-A1-A0SD TCGA-A1-A0SI TCGA-A1-A0SO TCGA-A2-A04P TCGA-A2-A04Q 
      131.67        14.37        20.88        28.01        18.02        78.41 
TCGA-A2-A04U TCGA-A2-A04X TCGA-A2-A0CM TCGA-A2-A0CU TCGA-A2-A0CW TCGA-A2-A0D0 
       87.25        55.43        24.79         5.19       107.93        67.33 
TCGA-A2-A0EN TCGA-A2-A0EP TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0SV TCGA-A2-A0SX 
      134.40       107.61        34.29        31.82        27.12        50.43 
TCGA-A2-A0SY TCGA-A2-A0T4 TCGA-A2-A0T7 TCGA-A2-A0YE TCGA-A2-A0YG TCGA-A2-A0YH 
       44.28        20.52        20.75        18.21        21.90        21.67 
TCGA-A2-A0YI TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A0YM TCGA-A2-A0YT TCGA-A2-A1FW 
       49.48        19.33        48.46        31.73        23.77        17.36 
TCGA-A2-A1FX TCGA-A2-A1G1 TCGA-A2-A25B TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A3XU 
       60.72        19.20        42.44        17.19        18.15        29.98 
TCGA-A2-A4S1 TCGA-A2-A4S3 TCGA-A7-A0CG TCGA-A7-A0DA TCGA-A7-A13D TCGA-A7-A13F 
       26.96        21.90        34.29        35.67        31.73        25.15 
TCGA-A7-A26F TCGA-A7-A3J1 TCGA-A7-A4SA TCGA-A7-A4SB TCGA-A7-A4SE TCGA-A7-A4SF 
       24.26        11.28        14.93        13.74        21.17        17.92 
TCGA-A7-A56D TCGA-A7-A5ZV TCGA-A7-A6VV TCGA-A7-A6VW TCGA-A7-A6VX TCGA-A8-A06R 
       14.73        12.10        10.29         9.37        10.42        17.98 
TCGA-A8-A06U TCGA-A8-A06X TCGA-A8-A06Y TCGA-A8-A075 TCGA-A8-A07G TCGA-A8-A07P 
       29.03        31.00        26.01        17.03        18.97        10.98 
TCGA-A8-A07R TCGA-A8-A07W TCGA-A8-A084 TCGA-A8-A085 TCGA-A8-A08B TCGA-A8-A08F 
        8.98         9.99        15.06        36.95        38.01        33.01 
TCGA-A8-A08J TCGA-A8-A08R TCGA-A8-A092 TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09D 
       37.05         0.99        30.97         9.99        12.00        50.04 
TCGA-A8-A09E TCGA-A8-A09N TCGA-A8-A09Q TCGA-A8-A09X TCGA-A8-A0A2 TCGA-A8-A0A6 
       49.05         1.02        25.02        14.01        19.04        21.04 
TCGA-AC-A23C TCGA-AC-A23H TCGA-AC-A2FF TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3W5 
        0.95         5.72        55.43         2.27        32.45        16.57 
TCGA-AC-A3W6 TCGA-AC-A62V TCGA-AC-A6IX TCGA-AC-A7VC TCGA-AC-A8OP TCGA-AC-A8OQ 
       19.79        11.44        12.26         0.03        20.19         1.12 
TCGA-AC-A8OS TCGA-AN-A03X TCGA-AN-A041 TCGA-AN-A04A TCGA-AN-A0AK TCGA-AN-A0AL 
        2.30         0.33         0.23         2.96         7.36         6.51 
TCGA-AN-A0AM TCGA-AN-A0FL TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FZ TCGA-AN-A0XN 
        0.16         7.59         0.33         0.36         0.33         0.33 
TCGA-AN-A0XP TCGA-AN-A0XU TCGA-AO-A03L TCGA-AO-A03N TCGA-AO-A0J2 TCGA-AO-A0J4 
        0.30         0.33        80.28        66.77        32.78        52.18 
TCGA-AO-A0J6 TCGA-AO-A0J7 TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JD TCGA-AO-A0JJ 
       37.48        20.32        21.53        50.70        72.00        62.04 
TCGA-AO-A124 TCGA-AO-A12D TCGA-AO-A12E TCGA-AO-A12F TCGA-AO-A1KT TCGA-AQ-A04H 
      102.58        64.04        57.30        48.36        17.79        24.79 
TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A0Y5 TCGA-AQ-A1H2 TCGA-AQ-A54O TCGA-AR-A0TP 
       26.93       130.09         5.65        15.62        32.91       111.32 
TCGA-AR-A0TT TCGA-AR-A0U1 TCGA-AR-A1AP TCGA-AR-A1AV TCGA-AR-A24H TCGA-AR-A24M 
       86.66       101.95        39.98        61.28       160.90        96.89 
TCGA-AR-A24R TCGA-AR-A24S TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A250 TCGA-AR-A251 
       87.22        97.84        85.35        50.96        89.00        78.48 
TCGA-AR-A252 TCGA-AR-A255 TCGA-AR-A2LN TCGA-AR-A2LR TCGA-AR-A5QM TCGA-AR-A5QQ 
       73.18        58.92        38.17        20.38        54.74        10.59 
TCGA-B6-A0IK TCGA-B6-A0IO TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RL TCGA-B6-A0RP 
       18.77       110.14       211.56        68.45        81.17       102.77 
TCGA-B6-A0RS TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0WY TCGA-B6-A1KF TCGA-B6-A1KI 
      100.70        79.63        18.35       113.79       101.52        73.51 
TCGA-B6-A2IU TCGA-B6-A402 TCGA-BH-A0AZ TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0BA 
      170.17        74.99        28.50        39.55        39.16        37.22 
TCGA-BH-A0BD TCGA-BH-A0BG TCGA-BH-A0BP TCGA-BH-A0BT TCGA-BH-A0BW TCGA-BH-A0BZ 
       18.21        24.85        48.69        45.57        11.67        49.05 
TCGA-BH-A0C0 TCGA-BH-A0C7 TCGA-BH-A0DH TCGA-BH-A0DQ TCGA-BH-A0GY TCGA-BH-A0H7 
       41.75        42.90        38.01         3.22        30.35        23.08 
TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0HI TCGA-BH-A0HU TCGA-BH-A0HX TCGA-BH-A0W3 
       41.00        52.96        20.38        12.89        27.25        23.93 
TCGA-BH-A0WA TCGA-BH-A18F TCGA-BH-A18K TCGA-BH-A18Q TCGA-BH-A18U TCGA-BH-A18V 
       23.05         8.81        90.84        55.63        51.39        51.16 
TCGA-BH-A1EN TCGA-BH-A1EO TCGA-BH-A1EV TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F6 
       69.93        91.99        12.00        17.69        25.81        97.48 
TCGA-BH-A1F8 TCGA-BH-A1FM TCGA-BH-A201 TCGA-BH-A203 TCGA-BH-A204 TCGA-BH-A209 
       24.66        45.63        28.14        38.60        83.31       130.16 
TCGA-BH-A5J0 TCGA-BH-A8FZ TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12W TCGA-C8-A12Z 
       23.51        18.87        11.77        12.66        12.66         0.39 
TCGA-C8-A130 TCGA-C8-A134 TCGA-C8-A135 TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HI 
        3.16         1.12         1.05         4.08        12.33        11.28 
TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HM TCGA-C8-A26X TCGA-C8-A26Y TCGA-C8-A26Z 
        0.16        12.03         2.30         0.36         0.43         8.28 
TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A27B 
        9.67         9.53         0.03         9.50        12.20         0.99 
TCGA-C8-A3M7 TCGA-D8-A13Y TCGA-D8-A13Z TCGA-D8-A142 TCGA-D8-A146 TCGA-D8-A1J8 
        0.03        11.90        20.88        13.97        21.14        14.17 
TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JC TCGA-D8-A1JE TCGA-D8-A1JG TCGA-D8-A1JH 
       17.49        16.50        15.78        18.90        12.03        14.01 
TCGA-D8-A1JI TCGA-D8-A1JJ TCGA-D8-A1JL TCGA-D8-A1JN TCGA-D8-A1JP TCGA-D8-A1X5 
       18.97        20.09        20.09        20.38        21.01        18.58 
TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XJ TCGA-D8-A1XL TCGA-D8-A1XU TCGA-D8-A1XY 
       23.90        27.58        21.83        19.92        12.99        16.54 
TCGA-D8-A1Y3 TCGA-D8-A27F TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27R TCGA-D8-A3Z6 
       14.14        16.04        13.48         4.80        10.09        18.51 
TCGA-D8-A73U TCGA-E2-A107 TCGA-E2-A109 TCGA-E2-A10C TCGA-E2-A10E TCGA-E2-A14O 
       16.18        34.42        46.59        40.11        28.44        44.68 
TCGA-E2-A14Q TCGA-E2-A14R TCGA-E2-A14V TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A154 
       38.24        38.60        34.26        25.41        27.12        19.43 
TCGA-E2-A159 TCGA-E2-A15A TCGA-E2-A15E TCGA-E2-A1BD TCGA-E2-A1IH TCGA-E2-A1IN 
       25.05        23.34        20.71        17.10        33.73        22.19 
TCGA-E2-A1IO TCGA-E2-A1LE TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A1LL 
       20.98        28.90       106.75       102.61         8.75        43.04 
TCGA-E2-A2P6 TCGA-E2-A573 TCGA-E2-A574 TCGA-E2-A9RU TCGA-E9-A1N4 TCGA-E9-A1NA 
        5.52        34.92        26.56        12.85        32.88        36.56 
TCGA-E9-A1ND TCGA-E9-A1NF TCGA-E9-A1RF TCGA-E9-A1RG TCGA-E9-A1RH TCGA-E9-A1RI 
       12.59        35.24         6.58        21.27        34.59        35.64 
TCGA-E9-A22E TCGA-E9-A248 TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A3QA TCGA-E9-A54Y 
       12.89         1.94         0.72        29.72        30.18        23.84 
TCGA-E9-A5FL TCGA-EW-A1IW TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1OW TCGA-EW-A1OY 
        0.79        12.20        18.21        18.90        22.82        29.85 
TCGA-EW-A1OZ TCGA-EW-A1P3 TCGA-EW-A1P8 TCGA-EW-A1PA TCGA-EW-A1PF TCGA-EW-A2FR 
       40.41        52.96         7.86        18.90        14.43        55.00 
TCGA-EW-A2FV TCGA-EW-A423 TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2DL TCGA-HN-A2NL 
       25.91        10.16         7.40       109.87       115.69         2.60 
TCGA-JL-A3YW TCGA-LD-A74U TCGA-LD-A9QF TCGA-LL-A441 TCGA-LL-A5YL TCGA-LL-A5YM 
       11.84        13.22        10.62        11.44        17.06        15.32 
TCGA-LL-A5YO TCGA-LL-A5YP TCGA-LL-A6FP TCGA-LL-A6FR TCGA-LL-A9Q3 TCGA-LQ-A4E4 
       14.47        14.79        22.26        16.08        14.07        27.91 
TCGA-OL-A5D6 TCGA-OL-A5RW TCGA-OL-A5S0 TCGA-OL-A66N TCGA-OL-A6VO TCGA-OL-A6VQ 
       36.30        36.36        20.38        26.04        28.21        19.73 
TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE TCGA-PL-A8LX TCGA-PL-A8LZ TCGA-S3-A6ZF 
       47.01        64.21        86.96         0.16         9.93        16.50 
TCGA-S3-A6ZH TCGA-UU-A93S TCGA-WT-AB44 TCGA-XX-A89A 
       16.93         3.81        29.03        16.04 

$`DEL PEAK 35(18Q23) WILD-TYPE`
TCGA-3C-AAAU TCGA-3C-AALJ TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT0 TCGA-5L-AAT1 
      129.14        42.81        40.14        11.44        48.56        48.36 
TCGA-5T-A9QA TCGA-A1-A0SB TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH 
        9.96         8.52        43.43        48.10        14.27        47.24 
TCGA-A1-A0SJ TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SP TCGA-A1-A0SQ 
       13.68        31.79         7.96        39.32        19.20        18.21 
TCGA-A2-A04N TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04V TCGA-A2-A04W TCGA-A2-A04Y 
      104.81       121.94        73.84        63.12       101.98        36.13 
TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CQ TCGA-A2-A0CR 
      136.73        99.12       114.81        92.48        88.60       107.93 
TCGA-A2-A0CS TCGA-A2-A0CT TCGA-A2-A0CV TCGA-A2-A0CX TCGA-A2-A0D1 TCGA-A2-A0D2 
       75.55        75.25        98.99        56.81        34.55        33.76 
TCGA-A2-A0D3 TCGA-A2-A0D4 TCGA-A2-A0EM TCGA-A2-A0EO TCGA-A2-A0EQ TCGA-A2-A0ER 
       61.58        25.22       101.72        80.28        79.76        74.40 
TCGA-A2-A0ES TCGA-A2-A0ET TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0EY TCGA-A2-A0ST 
       72.00        35.05        61.94        24.72        63.29        99.19 
TCGA-A2-A0SU TCGA-A2-A0SW TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 
       54.64        44.88        17.52        17.13         8.38        49.84 
TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YF TCGA-A2-A0YJ 
       17.46        18.90        32.55        25.28        50.47        18.61 
TCGA-A2-A1FV TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G4 TCGA-A2-A1G6 TCGA-A2-A259 
       23.47        22.45        20.25        19.56        16.47        52.47 
TCGA-A2-A25A TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD TCGA-A2-A3XS 
      107.70       105.34        10.59        20.88        39.65        33.93 
TCGA-A2-A3XT TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX TCGA-A2-A3XY TCGA-A2-A3XZ 
       83.01        32.75        49.48        47.31        34.98        50.37 
TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S2 
       38.37         7.30        24.39        21.30        23.21        21.14 
TCGA-A7-A0CD TCGA-A7-A0CE TCGA-A7-A0CH TCGA-A7-A0CJ TCGA-A7-A0D9 TCGA-A7-A0DB 
       38.30        35.31        35.47        30.61        37.45        33.11 
TCGA-A7-A0DC TCGA-A7-A13E TCGA-A7-A13G TCGA-A7-A13H TCGA-A7-A26E TCGA-A7-A26G 
       29.79        20.19        23.61        29.56        31.36        23.74 
TCGA-A7-A26H TCGA-A7-A26I TCGA-A7-A26J TCGA-A7-A2KD TCGA-A7-A3IY TCGA-A7-A3IZ 
       23.80        21.73        20.61        22.32        11.34        10.59 
TCGA-A7-A3J0 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A426 TCGA-A7-A4SD TCGA-A7-A5ZW 
       10.29        13.41        14.70        11.97        14.50        10.72 
TCGA-A7-A5ZX TCGA-A7-A6VY TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06T 
       11.05         8.75        13.02        13.02         1.02        53.06 
TCGA-A8-A06Z TCGA-A8-A076 TCGA-A8-A079 TCGA-A8-A07B TCGA-A8-A07E TCGA-A8-A07F 
        1.02        53.98         9.01        43.00        19.99        18.97 
TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07L TCGA-A8-A07O TCGA-A8-A07S TCGA-A8-A07U 
       14.01        12.00        32.05         9.99         7.99        24.99 
TCGA-A8-A07Z TCGA-A8-A082 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08C TCGA-A8-A08G 
       45.07        18.05        13.02         0.99        28.96        19.96 
TCGA-A8-A08I TCGA-A8-A08L TCGA-A8-A08O TCGA-A8-A08P TCGA-A8-A08S TCGA-A8-A08T 
       12.00         9.99        31.00        31.00        33.01       112.08 
TCGA-A8-A08X TCGA-A8-A08Z TCGA-A8-A091 TCGA-A8-A093 TCGA-A8-A095 TCGA-A8-A097 
       43.00        40.01        33.01        17.95        41.98        12.00 
TCGA-A8-A099 TCGA-A8-A09C TCGA-A8-A09I TCGA-A8-A09K TCGA-A8-A09M TCGA-A8-A09R 
        9.99         1.02        45.07        29.98        33.07         8.98 
TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A0A1 TCGA-A8-A0A4 TCGA-A8-A0A7 
       19.04        15.02         0.99        12.00        13.02         0.99 
TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23E TCGA-AC-A23G TCGA-AC-A2B8 
       27.02        17.03        38.04         2.37        10.85         1.48 
TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM 
       38.53        99.35        40.57        36.99        38.79        26.04 
TCGA-AC-A2FO TCGA-AC-A2QH TCGA-AC-A2QI TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QP 
       50.70        33.04         0.92        16.31        14.83        22.19 
TCGA-AC-A3TN TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A5XS TCGA-AC-A62X TCGA-AC-A62Y 
       14.99        23.24        24.79         1.55        13.71        17.42 
TCGA-AC-A6IV TCGA-AC-A6IW TCGA-AC-A6NO TCGA-AC-A7VB TCGA-AC-A8OR TCGA-AN-A03Y 
       18.67        13.58         1.68         8.22         1.32         0.33 
TCGA-AN-A046 TCGA-AN-A049 TCGA-AN-A04C TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AR 
        0.33         0.62         1.78         1.71         9.96         0.33 
TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FK 
        0.33         0.33         6.44         5.65         7.96         7.00 
TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FX TCGA-AN-A0FY TCGA-AN-A0XL 
        7.17         6.28         7.04         0.33         0.33         0.33 
TCGA-AN-A0XO TCGA-AN-A0XR TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XV TCGA-AN-A0XW 
       12.33         0.33         0.33         0.33         5.33         5.59 
TCGA-AO-A03M TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03U 
       61.35        81.63        95.70        68.75        47.87        58.95 
TCGA-AO-A03V TCGA-AO-A0J3 TCGA-AO-A0J5 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JC 
       29.13        21.40        26.04        22.36        53.03        50.86 
TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JG TCGA-AO-A0JI TCGA-AO-A0JL TCGA-AO-A0JM 
       76.77        21.37        26.24        50.24        55.33        71.80 
TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 TCGA-AO-A129 TCGA-AO-A12A TCGA-AO-A12B 
       99.25       108.72       106.78       108.03        90.58        98.27 
TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KQ TCGA-AO-A1KR 
       41.62        28.37        14.73        82.62        61.87        70.39 
TCGA-AO-A1KS TCGA-AQ-A1H3 TCGA-AQ-A54N TCGA-AQ-A7U7 TCGA-AR-A0TQ TCGA-AR-A0TR 
        0.53        32.52         2.56        19.20        73.64         5.26 
TCGA-AR-A0TS TCGA-AR-A0TV TCGA-AR-A0TW TCGA-AR-A0TX TCGA-AR-A0TY TCGA-AR-A0TZ 
       74.79        42.35        98.93        64.83        55.86       107.24 
TCGA-AR-A0U0 TCGA-AR-A0U2 TCGA-AR-A0U3 TCGA-AR-A0U4 TCGA-AR-A1AH TCGA-AR-A1AI 
       65.36        83.87       114.02        85.97        75.55        61.84 
TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AM TCGA-AR-A1AN TCGA-AR-A1AO 
       52.77        51.25        48.82        76.11        43.73        43.56 
TCGA-AR-A1AQ TCGA-AR-A1AR TCGA-AR-A1AS TCGA-AR-A1AU TCGA-AR-A1AW TCGA-AR-A1AX 
       43.07        17.23        37.81        76.21        63.62        62.14 
TCGA-AR-A1AY TCGA-AR-A24K TCGA-AR-A24L TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P 
       33.73        50.89        94.22        78.51        84.20         2.76 
TCGA-AR-A24Q TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24X TCGA-AR-A24Z TCGA-AR-A254 
      104.28        76.01        53.36        83.77        79.00        72.76 
TCGA-AR-A256 TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LL 
       93.83       143.21        20.25        62.86        54.21        66.15 
TCGA-AR-A2LM TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A5QN TCGA-AR-A5QP TCGA-B6-A0I1 
       52.11        39.39        40.54        16.04        20.45        77.62 
TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0I9 TCGA-B6-A0IA TCGA-B6-A0IB TCGA-B6-A0IC 
      143.38       149.59        12.13       220.90       129.57        50.70 
TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IM TCGA-B6-A0IN 
       65.72       146.50       112.37       176.98       126.12        84.59 
TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RM TCGA-B6-A0RN 
      110.93       140.88       189.01       234.28        78.02       172.96 
TCGA-B6-A0RO TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RU TCGA-B6-A0RV TCGA-B6-A0WS 
      162.05       140.48        89.46       131.21       157.41        97.48 
TCGA-B6-A0WT TCGA-B6-A0WX TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 
      188.68        21.47       129.57       129.70       186.48        28.27 
TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KC TCGA-B6-A1KN TCGA-B6-A401 TCGA-B6-A408 
       68.94        58.88        43.59       139.17        85.35        68.12 
TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AU TCGA-BH-A0AV TCGA-BH-A0AW TCGA-BH-A0AY 
      103.63        71.15        24.53        59.84        20.45        25.55 
TCGA-BH-A0B0 TCGA-BH-A0B2 TCGA-BH-A0B5 TCGA-BH-A0B6 TCGA-BH-A0B7 TCGA-BH-A0B9 
       46.95        40.83        48.36        56.94        56.98        51.68 
TCGA-BH-A0BC TCGA-BH-A0BF TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BM TCGA-BH-A0BO 
       32.02        25.71        21.70        44.05        61.68        35.67 
TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BV TCGA-BH-A0C1 TCGA-BH-A0C3 
       27.19        53.69        53.95        49.94        44.02        48.13 
TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL 
       45.83        31.17        23.44        22.13        13.91        48.23 
TCGA-BH-A0DO TCGA-BH-A0DP TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX 
       17.26        15.65         2.56        38.47        67.86        47.41 
TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E6 TCGA-BH-A0E7 
       16.27         4.41        15.68        14.30         9.63        44.81 
TCGA-BH-A0E9 TCGA-BH-A0EA TCGA-BH-A0EB TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0GZ 
       46.19        32.58        24.49        31.00        24.43        10.78 
TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0HB TCGA-BH-A0HK 
       15.16        37.78        35.51        24.56        26.50         5.85 
TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HW TCGA-BH-A0HY TCGA-BH-A0RX 
        2.50        13.61        36.85        51.32        50.79         5.59 
TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J 
       24.95        42.35        44.81         2.01         7.23        20.12 
TCGA-BH-A18L TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18R TCGA-BH-A18S 
       26.66        72.56        37.74        30.28        37.55        66.05 
TCGA-BH-A18T TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EW TCGA-BH-A1EX 
        7.36       113.82        82.85        42.28        55.69        49.58 
TCGA-BH-A1F2 TCGA-BH-A1F5 TCGA-BH-A1FB TCGA-BH-A1FC TCGA-BH-A1FD TCGA-BH-A1FE 
       31.53        89.16       120.62       114.15        33.17        74.73 
TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FN TCGA-BH-A1FR 
      122.89        36.92        63.35        55.00        72.07       144.59 
TCGA-BH-A1FU TCGA-BH-A202 TCGA-BH-A208 TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 
       72.07        26.14        57.83        10.65         6.44        20.12 
TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5IZ TCGA-BH-A6R8 TCGA-BH-A6R9 
       10.52       109.28         8.94        18.64         9.63         5.26 
TCGA-BH-A8FY TCGA-BH-A8G0 TCGA-BH-AB28 TCGA-C8-A12L TCGA-C8-A12M TCGA-C8-A12N 
        9.70        21.76         9.44        11.93        11.77        11.77 
TCGA-C8-A12O TCGA-C8-A12U TCGA-C8-A12V TCGA-C8-A12X TCGA-C8-A131 TCGA-C8-A132 
       12.66        12.66        12.66        12.66         2.24         1.87 
TCGA-C8-A137 TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HL TCGA-C8-A1HN TCGA-C8-A26V 
        4.11        10.92        11.34        10.42         3.25         0.30 
TCGA-C8-A26W TCGA-C8-A3M8 TCGA-C8-A8HP TCGA-C8-A8HQ TCGA-C8-A8HR TCGA-C8-A9FZ 
        0.23         0.23        13.02        12.49        13.41        19.46 
TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A143 TCGA-D8-A145 TCGA-D8-A147 TCGA-D8-A1JB 
       13.25        20.58        14.17        13.48        19.20        18.71 
TCGA-D8-A1JD TCGA-D8-A1JF TCGA-D8-A1JK TCGA-D8-A1JM TCGA-D8-A1JS TCGA-D8-A1JT 
       18.15        12.03        20.12        19.40        12.20        13.32 
TCGA-D8-A1JU TCGA-D8-A1X6 TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1XB TCGA-D8-A1XC 
       14.70        17.79        16.73        25.74        18.15        12.39 
TCGA-D8-A1XD TCGA-D8-A1XF TCGA-D8-A1XG TCGA-D8-A1XK TCGA-D8-A1XM TCGA-D8-A1XO 
       17.16        15.22        14.73        14.50        17.69        15.55 
TCGA-D8-A1XQ TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XT TCGA-D8-A1XV TCGA-D8-A1XW 
       16.41        15.85        16.31         6.35        15.16        12.66 
TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 TCGA-D8-A27E TCGA-D8-A27G 
       15.32        15.52         9.93        14.24        17.42        13.45 
TCGA-D8-A27H TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27P TCGA-D8-A27T 
       13.05        14.43         9.44        16.41         0.76        13.08 
TCGA-D8-A27V TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A4Z1 TCGA-D8-A73W TCGA-D8-A73X 
       12.53        12.26        33.37        21.67         8.02        12.10 
TCGA-E2-A105 TCGA-E2-A108 TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10F TCGA-E2-A14N 
       43.00        27.52        40.41        37.51        28.87        47.15 
TCGA-E2-A14P TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14W TCGA-E2-A14X 
       40.96        33.17        33.30        43.33        32.02        31.96 
TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A153 TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A158 
       28.60        18.51        23.24        21.04        23.87        14.79 
TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15I 
       22.82        17.29        21.63        18.21        12.92        17.42 
TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15O TCGA-E2-A15P 
       19.40         9.04        20.58        11.05        13.02        19.56 
TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B1 
       17.06        14.07        14.99        60.53        53.62        53.03 
TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BC TCGA-E2-A1IE TCGA-E2-A1IF 
       33.01        32.35        28.50        16.47        38.30        37.41 
TCGA-E2-A1IG TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IU 
       32.78        33.70        28.44        22.65         3.88        11.08 
TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L8 TCGA-E2-A1L9 TCGA-E2-A1LA TCGA-E2-A1LB 
       54.18        27.42        39.62        19.66        24.59        40.47 
TCGA-E2-A1LG TCGA-E2-A2P5 TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A576 
       18.87        16.93        15.72         8.28        30.61        34.29 
TCGA-E9-A1N3 TCGA-E9-A1N5 TCGA-E9-A1N6 TCGA-E9-A1N8 TCGA-E9-A1N9 TCGA-E9-A1NC 
       34.82        36.82        13.48        12.00        13.12        39.55 
TCGA-E9-A1NE TCGA-E9-A1NG TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 
       35.77        25.84         9.86        11.90        28.27        34.95 
TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RA 
        2.56         6.12         3.02         2.76        21.21        32.09 
TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A226 TCGA-E9-A227 
       32.09        40.24         1.12        34.65        34.13        32.05 
TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A22D TCGA-E9-A22G 
       12.53        13.32        39.09        22.75        41.03        23.51 
TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A244 TCGA-E9-A247 TCGA-E9-A249 TCGA-E9-A24A 
       20.71        17.06         0.69        27.22         7.13        24.56 
TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A5FK 
        0.76        26.07        18.41        15.72        12.33        14.70 
TCGA-E9-A5UO TCGA-E9-A5UP TCGA-E9-A6HE TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1J2 
       13.81        14.40        15.39        39.72         8.48        13.25 
TCGA-EW-A1J3 TCGA-EW-A1J5 TCGA-EW-A1J6 TCGA-EW-A1OV TCGA-EW-A1OX TCGA-EW-A1P0 
       16.57        15.68        28.77        25.94        29.95        41.13 
TCGA-EW-A1P1 TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1PB 
       39.78        29.82        23.11        18.48        30.08        19.99 
TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FS 
        6.15        13.94        10.52        34.55        19.96        52.73 
TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A3U0 TCGA-EW-A424 TCGA-GM-A2D9 TCGA-GM-A2DA 
       22.09        34.03        17.49        23.51        59.57       216.76 
TCGA-GM-A2DB TCGA-GM-A2DC TCGA-GM-A2DD TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A2DI 
       79.10        83.34        75.02        70.85        72.10        85.15 
TCGA-GM-A2DK TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A2DO TCGA-GM-A3NW TCGA-GM-A3NY 
       86.96       106.06       101.62        85.35       110.50        38.20 
TCGA-GM-A3XG TCGA-GM-A3XL TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX 
       43.73        69.30        66.38        72.03        13.55        18.12 
TCGA-HN-A2OB TCGA-JL-A3YX TCGA-LD-A66U TCGA-LD-A7W5 TCGA-LD-A7W6 TCGA-LL-A440 
       62.43        11.57        21.24         7.10        13.28        24.95 
TCGA-LL-A442 TCGA-LL-A50Y TCGA-LL-A5YN TCGA-LL-A6FQ TCGA-LL-A73Y TCGA-LL-A73Z 
       10.95        25.05        14.70         2.63        15.68         7.46 
TCGA-LL-A740 TCGA-LL-A7SZ TCGA-LL-A7T0 TCGA-LL-A8F5 TCGA-MS-A51U TCGA-OK-A5Q2 
       14.50        14.70        12.36        14.73        22.39         2.10 
TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RU TCGA-OL-A5RV TCGA-OL-A5RX 
       58.52        31.99        58.62        40.08        34.92        28.87 
TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66K 
       24.72        22.32        26.70        23.47        65.62        41.92 
TCGA-OL-A66L TCGA-OL-A66O TCGA-OL-A66P TCGA-OL-A6VR TCGA-OL-A97C TCGA-PL-A8LY 
       42.77        17.36        14.07        40.11         8.91         0.26 
TCGA-S3-A6ZG TCGA-S3-AA0Z TCGA-S3-AA10 TCGA-S3-AA11 TCGA-S3-AA12 TCGA-S3-AA14 
       13.12        16.80        15.39        13.84        15.35        14.96 
TCGA-S3-AA15 TCGA-S3-AA17 TCGA-UL-AAZ6 TCGA-W8-A86G TCGA-WT-AB41 TCGA-XX-A899 
       13.84        13.94        17.03        11.41        52.96        15.35 
TCGA-Z7-A8R5 TCGA-Z7-A8R6 
      108.07       107.05 

  DEL PEAK 35(18Q23) MUTATED DEL PEAK 35(18Q23) WILD-TYPE 
                        0.03                         0.23 
  DEL PEAK 35(18Q23) MUTATED DEL PEAK 35(18Q23) WILD-TYPE 
                      211.56                       234.28 
  DEL PEAK 35(18Q23) MUTATED DEL PEAK 35(18Q23) WILD-TYPE 
                       21.75                        25.79 
[1] "0.0 - 211.6 (21.8)" "0.2 - 234.3 (25.8)"
[1] "hr=" "1.4"
D64V2, continuous
                              vv
clus                           STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  DEL PEAK 35(18Q23) MUTATED        23       29        0        0       113
  DEL PEAK 35(18Q23) WILD-TYPE      66       52        8        3       240
                              vv
clus                           STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  DEL PEAK 35(18Q23) MUTATED          74         0         55         15
  DEL PEAK 35(18Q23) WILD-TYPE       171         2         95         14
                              vv
clus                           STAGE IIIC STAGE IV STAGE TIS STAGE X
  DEL PEAK 35(18Q23) MUTATED           28        6         0       3
  DEL PEAK 35(18Q23) WILD-TYPE         35       14         1      10
D64V3, multiclass
            clus
vv           DEL PEAK 35(18Q23) MUTATED DEL PEAK 35(18Q23) WILD-TYPE
  STAGE I                            23                           66
  STAGE IA                           29                           52
  STAGE IB                            0                            8
  STAGE II                            0                            3
  STAGE IIA                         113                          240
  STAGE IIB                          74                          171
  STAGE III                           0                            2
  STAGE IIIA                         55                           95
  STAGE IIIB                         15                           14
  STAGE IIIC                         28                           35
  STAGE IV                            6                           14
  STAGE TIS                           0                            1
  STAGE X                             3                           10
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                            T1  T2  T3  T4
  DEL PEAK 35(18Q23) MUTATED    74 212  42  20
  DEL PEAK 35(18Q23) WILD-TYPE 198 404  88  20
D64V4, multiclass
    clus
vv   DEL PEAK 35(18Q23) MUTATED DEL PEAK 35(18Q23) WILD-TYPE
  T1                         74                          198
  T2                        212                          404
  T3                         42                           88
  T4                         20                           20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                            N0  N1  N2  N3
  DEL PEAK 35(18Q23) MUTATED   160 104  48  30
  DEL PEAK 35(18Q23) WILD-TYPE 341 246  69  45
D64V5, multiclass
    clus
vv   DEL PEAK 35(18Q23) MUTATED DEL PEAK 35(18Q23) WILD-TYPE
  N0                        160                          341
  N1                        104                          246
  N2                         48                           69
  N3                         30                           45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D64V6, binary
                              cls
clus                             0   1
  DEL PEAK 35(18Q23) MUTATED   289   6
  DEL PEAK 35(18Q23) WILD-TYPE 590  15
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 35(18Q23) MUTATED    289    6
  DEL PEAK 35(18Q23) WILD-TYPE  590   15
   clus
vv  DEL PEAK 35(18Q23) MUTATED DEL PEAK 35(18Q23) WILD-TYPE
  0                        289                          590
  1                          6                           15
[1] 2 2
[1] FALSE
D64V7, binary
                              cls
clus                             0   1
  DEL PEAK 35(18Q23) MUTATED   344   5
  DEL PEAK 35(18Q23) WILD-TYPE 707   6
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 35(18Q23) MUTATED    344    5
  DEL PEAK 35(18Q23) WILD-TYPE  707    6
        clus
vv       DEL PEAK 35(18Q23) MUTATED DEL PEAK 35(18Q23) WILD-TYPE
  FEMALE                        344                          707
  MALE                            5                            6
[1] 2 2
[1] FALSE
                              vv
clus                           INFILTRATING CARCINOMA NOS
  DEL PEAK 35(18Q23) MUTATED                            1
  DEL PEAK 35(18Q23) WILD-TYPE                          0
                              vv
clus                           INFILTRATING DUCTAL CARCINOMA
  DEL PEAK 35(18Q23) MUTATED                             271
  DEL PEAK 35(18Q23) WILD-TYPE                           492
                              vv
clus                           INFILTRATING LOBULAR CARCINOMA
  DEL PEAK 35(18Q23) MUTATED                               52
  DEL PEAK 35(18Q23) WILD-TYPE                            140
                              vv
clus                           MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  DEL PEAK 35(18Q23) MUTATED                     3                     2
  DEL PEAK 35(18Q23) WILD-TYPE                   3                     2
                              vv
clus                           MIXED HISTOLOGY (PLEASE SPECIFY)
  DEL PEAK 35(18Q23) MUTATED                                  8
  DEL PEAK 35(18Q23) WILD-TYPE                               22
                              vv
clus                           MUCINOUS CARCINOMA OTHER  SPECIFY
  DEL PEAK 35(18Q23) MUTATED                    0             11
  DEL PEAK 35(18Q23) WILD-TYPE                 17             37
D64V8, multiclass
                                  clus
vv                                 DEL PEAK 35(18Q23) MUTATED
  INFILTRATING CARCINOMA NOS                                1
  INFILTRATING DUCTAL CARCINOMA                           271
  INFILTRATING LOBULAR CARCINOMA                           52
  MEDULLARY CARCINOMA                                       3
  METAPLASTIC CARCINOMA                                     2
  MIXED HISTOLOGY (PLEASE SPECIFY)                          8
  MUCINOUS CARCINOMA                                        0
  OTHER  SPECIFY                                           11
                                  clus
vv                                 DEL PEAK 35(18Q23) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                  0
  INFILTRATING DUCTAL CARCINOMA                             492
  INFILTRATING LOBULAR CARCINOMA                            140
  MEDULLARY CARCINOMA                                         3
  METAPLASTIC CARCINOMA                                       2
  MIXED HISTOLOGY (PLEASE SPECIFY)                           22
  MUCINOUS CARCINOMA                                         17
  OTHER  SPECIFY                                             37
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D64V9, binary
                              cls
clus                             0   1
  DEL PEAK 35(18Q23) MUTATED   105 244
  DEL PEAK 35(18Q23) WILD-TYPE 183 530
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 35(18Q23) MUTATED    105  244
  DEL PEAK 35(18Q23) WILD-TYPE  183  530
     clus
vv    DEL PEAK 35(18Q23) MUTATED DEL PEAK 35(18Q23) WILD-TYPE
  NO                         105                          183
  YES                        244                          530
[1] 2 2
[1] FALSE
D64V10, continuous
                              vv
clus                           AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 35(18Q23) MUTATED                                  0    28
  DEL PEAK 35(18Q23) WILD-TYPE                                1    32
                              vv
clus                           BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 35(18Q23) MUTATED                          56   232
  DEL PEAK 35(18Q23) WILD-TYPE                       114   504
D64V11, multiclass
                                  clus
vv                                 DEL PEAK 35(18Q23) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                          0
  ASIAN                                                    28
  BLACK OR AFRICAN AMERICAN                                56
  WHITE                                                   232
                                  clus
vv                                 DEL PEAK 35(18Q23) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                            1
  ASIAN                                                      32
  BLACK OR AFRICAN AMERICAN                                 114
  WHITE                                                     504
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D64V12, binary
                              cls
clus                             0   1
  DEL PEAK 35(18Q23) MUTATED    11 285
  DEL PEAK 35(18Q23) WILD-TYPE  27 573
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 35(18Q23) MUTATED     11  285
  DEL PEAK 35(18Q23) WILD-TYPE   27  573
                        clus
vv                       DEL PEAK 35(18Q23) MUTATED
  HISPANIC OR LATINO                             11
  NOT HISPANIC OR LATINO                        285
                        clus
vv                       DEL PEAK 35(18Q23) WILD-TYPE
  HISPANIC OR LATINO                               27
  NOT HISPANIC OR LATINO                          573
[1] 2 2
[1] FALSE

Clustering(65) Variable = DEL PEAK 36(19P13.3) MUTATION ANALYSIS
D65V1, survival
                                sevent
clus2                              0   1
  DEL PEAK 36(19P13.3) MUTATED   302  50
  DEL PEAK 36(19P13.3) WILD-TYPE 614  78
  DEL PEAK 36(19P13.3) MUTATED DEL PEAK 36(19P13.3) WILD-TYPE 
                           352                            692 
  DEL PEAK 36(19P13.3) MUTATED DEL PEAK 36(19P13.3) WILD-TYPE 
                            50                             78 
$`DEL PEAK 36(19P13.3) MUTATED`
TCGA-3C-AALI TCGA-3C-AALJ TCGA-4H-AAAK TCGA-5T-A9QA TCGA-A1-A0SD TCGA-A1-A0SJ 
      131.67        42.81        11.44         9.96        14.37        13.68 
TCGA-A1-A0SK TCGA-A1-A0SQ TCGA-A2-A04P TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04X 
       31.79        18.21        18.02        73.84        87.25        55.43 
TCGA-A2-A0CM TCGA-A2-A0CW TCGA-A2-A0D0 TCGA-A2-A0D4 TCGA-A2-A0EO TCGA-A2-A0SX 
       24.79       107.93        67.33        25.22        80.28        50.43 
TCGA-A2-A0T3 TCGA-A2-A0T7 TCGA-A2-A0YE TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A0YJ 
       49.84        20.75        18.21        21.90        21.67        18.61 
TCGA-A2-A0YT TCGA-A2-A1FW TCGA-A2-A1G0 TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A3XT 
       23.77        17.36        20.25        18.15       105.34        83.01 
TCGA-A2-A3XX TCGA-A2-A3XZ TCGA-A2-A3Y0 TCGA-A2-A4S1 TCGA-A2-A4S3 TCGA-A7-A0CE 
       47.31        50.37        38.37        26.96        21.90        35.31 
TCGA-A7-A0DA TCGA-A7-A13D TCGA-A7-A13E TCGA-A7-A26G TCGA-A7-A26I TCGA-A7-A2KD 
       35.67        31.73        20.19        23.74        21.73        22.32 
TCGA-A7-A3IZ TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF TCGA-A7-A56D TCGA-A7-A5ZV 
       10.59        14.50        21.17        17.92        14.73        12.10 
TCGA-A7-A6VV TCGA-A7-A6VW TCGA-A7-A6VX TCGA-A7-A6VY TCGA-A8-A06Q TCGA-A8-A06R 
       10.29         9.37        10.42         8.75         1.02        17.98 
TCGA-A8-A06T TCGA-A8-A06U TCGA-A8-A06X TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A076 
       53.06        29.03        31.00         1.02        17.03        53.98 
TCGA-A8-A079 TCGA-A8-A07G TCGA-A8-A07L TCGA-A8-A07O TCGA-A8-A07P TCGA-A8-A07R 
        9.01        18.97        32.05         9.99        10.98         8.98 
TCGA-A8-A07W TCGA-A8-A085 TCGA-A8-A08F TCGA-A8-A08G TCGA-A8-A08I TCGA-A8-A08J 
        9.99        36.95        33.01        19.96        12.00        37.05 
TCGA-A8-A08O TCGA-A8-A08R TCGA-A8-A08S TCGA-A8-A092 TCGA-A8-A097 TCGA-A8-A09A 
       31.00         0.99        33.01        30.97        12.00         9.99 
TCGA-A8-A09C TCGA-A8-A09I TCGA-A8-A09K TCGA-A8-A09M TCGA-A8-A09Q TCGA-AC-A2B8 
        1.02        45.07        29.98        33.07        25.02         1.48 
TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FM TCGA-AC-A2QH TCGA-AC-A3OD TCGA-AC-A62V 
       38.53        99.35        26.04        33.04        14.83        11.44 
TCGA-AC-A6IX TCGA-AC-A7VB TCGA-AC-A8OQ TCGA-AN-A041 TCGA-AN-A04C TCGA-AN-A0AJ 
       12.26         8.22         1.12         0.23         1.78         9.96 
TCGA-AN-A0AK TCGA-AN-A0AL TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FD 
        7.36         6.51         0.33         0.33         0.33         6.44 
TCGA-AN-A0FJ TCGA-AN-A0FL TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FY TCGA-AN-A0FZ 
        7.96         7.59         7.04         0.33         0.33         0.33 
TCGA-AN-A0XU TCGA-AN-A0XW TCGA-AO-A03M TCGA-AO-A03N TCGA-AO-A03P TCGA-AO-A0J2 
        0.33         5.59        61.35        66.77        95.70        32.78 
TCGA-AO-A0J3 TCGA-AO-A0J4 TCGA-AO-A0JD TCGA-AO-A0JM TCGA-AO-A129 TCGA-AO-A12D 
       21.40        52.18        72.00        71.80       108.03        64.04 
TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A1KR TCGA-AO-A1KT TCGA-AQ-A04J TCGA-AQ-A04L 
       48.36        41.62        70.39        17.79        26.93       130.09 
TCGA-AQ-A0Y5 TCGA-AQ-A54N TCGA-AR-A0TP TCGA-AR-A0TQ TCGA-AR-A0TS TCGA-AR-A0TT 
        5.65         2.56       111.32        73.64        74.79        86.66 
TCGA-AR-A0TW TCGA-AR-A0U1 TCGA-AR-A0U2 TCGA-AR-A0U3 TCGA-AR-A1AH TCGA-AR-A1AJ 
       98.93       101.95        83.87       114.02        75.55        52.77 
TCGA-AR-A1AK TCGA-AR-A1AQ TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A24H TCGA-AR-A24R 
       51.25        43.07        63.62        62.14       160.90        87.22 
TCGA-AR-A24S TCGA-AR-A250 TCGA-AR-A252 TCGA-AR-A256 TCGA-AR-A2LK TCGA-AR-A2LR 
       97.84        89.00        73.18        93.83        54.21        20.38 
TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0IB TCGA-B6-A0IJ TCGA-B6-A0IM 
       10.59        77.62       143.38       129.57       176.98       126.12 
TCGA-B6-A0IN TCGA-B6-A0IO TCGA-B6-A0IQ TCGA-B6-A0RL TCGA-B6-A0RO TCGA-B6-A0RS 
       84.59       110.14       140.88        81.17       162.05       100.70 
TCGA-B6-A0RU TCGA-B6-A0WY TCGA-B6-A1KF TCGA-B6-A1KN TCGA-B6-A402 TCGA-B6-A408 
      131.21       113.79       101.52       139.17        74.99        68.12 
TCGA-BH-A0AU TCGA-BH-A0AV TCGA-BH-A0AY TCGA-BH-A0B3 TCGA-BH-A0B6 TCGA-BH-A0B9 
       24.53        59.84        25.55        39.55        56.94        51.68 
TCGA-BH-A0BF TCGA-BH-A0BG TCGA-BH-A0BL TCGA-BH-A0BP TCGA-BH-A0BR TCGA-BH-A0BT 
       25.71        24.85        44.05        48.69        53.69        45.57 
TCGA-BH-A0BW TCGA-BH-A0DQ TCGA-BH-A0E0 TCGA-BH-A0E6 TCGA-BH-A0EB TCGA-BH-A0H0 
       11.67         3.22         4.41         9.63        24.49        15.16 
TCGA-BH-A0H7 TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0WA 
       23.08        12.89        51.32        27.25        50.79        23.05 
TCGA-BH-A18F TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18Q 
        8.81         7.23        20.12        90.84        26.66        55.63 
TCGA-BH-A18S TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1EN TCGA-BH-A1EV TCGA-BH-A1EW 
       66.05        51.39        51.16        69.93        12.00        55.69 
TCGA-BH-A1F8 TCGA-BH-A1FC TCGA-BH-A1FJ TCGA-BH-A1FM TCGA-BH-A1FN TCGA-BH-A1FU 
       24.66       114.15        63.35        45.63        72.07        72.07 
TCGA-BH-A204 TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A5IZ TCGA-BH-A8FZ TCGA-C8-A12L 
       83.31        57.83       130.16        18.64        18.87        11.93 
TCGA-C8-A12M TCGA-C8-A12Q TCGA-C8-A12U TCGA-C8-A12W TCGA-C8-A12Z TCGA-C8-A130 
       11.77        12.66        12.66        12.66         0.39         3.16 
TCGA-C8-A132 TCGA-C8-A135 TCGA-C8-A138 TCGA-C8-A1HF TCGA-C8-A1HJ TCGA-C8-A1HK 
        1.87         1.05         4.08        10.92         0.16        12.03 
TCGA-C8-A1HL TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A273 
       10.42         2.30         3.25         0.43         8.28         9.67 
TCGA-C8-A27A TCGA-C8-A8HP TCGA-C8-A8HQ TCGA-C8-A8HR TCGA-C8-A9FZ TCGA-D8-A13Y 
       12.20        13.02        12.49        13.41        19.46        11.90 
TCGA-D8-A140 TCGA-D8-A147 TCGA-D8-A1JC TCGA-D8-A1JF TCGA-D8-A1JI TCGA-D8-A1JJ 
       13.25        19.20        15.78        12.03        18.97        20.09 
TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1X5 TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XJ 
       20.09        19.40        18.58        23.90        27.58        21.83 
TCGA-D8-A1XL TCGA-D8-A1XQ TCGA-D8-A1XT TCGA-D8-A1XY TCGA-D8-A1XZ TCGA-D8-A1Y2 
       19.92        16.41         6.35        16.54        15.32        14.24 
TCGA-D8-A1Y3 TCGA-D8-A27G TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27R TCGA-D8-A27W 
       14.14        13.45        13.48         4.80        10.09        12.26 
TCGA-E2-A109 TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14R TCGA-E2-A14Y TCGA-E2-A150 
       46.59        44.68        40.96        38.60        28.60        25.41 
TCGA-E2-A152 TCGA-E2-A158 TCGA-E2-A159 TCGA-E2-A15A TCGA-E2-A15E TCGA-E2-A15H 
       27.12        14.79        25.05        23.34        20.71        12.92 
TCGA-E2-A15M TCGA-E2-A15P TCGA-E2-A15S TCGA-E2-A1AZ TCGA-E2-A1B1 TCGA-E2-A1IH 
       11.05        19.56        14.07        60.53        53.03        33.73 
TCGA-E2-A1II TCGA-E2-A1IN TCGA-E2-A1LG TCGA-E2-A1LL TCGA-E2-A573 TCGA-E2-A9RU 
       33.70        22.19        18.87        43.04        34.92        12.85 
TCGA-E9-A1N6 TCGA-E9-A1N8 TCGA-E9-A1N9 TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NF 
       13.48        12.00        13.12        39.55        12.59        35.24 
TCGA-E9-A1NG TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1RB 
       25.84         9.86        11.90        34.95         2.56        32.09 
TCGA-E9-A1RC TCGA-E9-A1RG TCGA-E9-A1RH TCGA-E9-A1RI TCGA-E9-A226 TCGA-E9-A22B 
       40.24        21.27        34.59        35.64        34.13        22.75 
TCGA-E9-A22D TCGA-E9-A22G TCGA-E9-A244 TCGA-E9-A248 TCGA-E9-A295 TCGA-E9-A2JS 
       41.03        23.51         0.69         1.94         0.72        29.72 
TCGA-E9-A3QA TCGA-E9-A5FK TCGA-E9-A5UO TCGA-EW-A1J1 TCGA-EW-A1J6 TCGA-EW-A1OV 
       30.18        14.70        13.81        18.90        28.77        25.94 
TCGA-EW-A1OW TCGA-EW-A1OX TCGA-EW-A1OY TCGA-EW-A1OZ TCGA-EW-A1P4 TCGA-EW-A1P8 
       22.82        29.95        29.85        40.41        29.82         7.86 
TCGA-EW-A1PC TCGA-EW-A1PH TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A3U0 TCGA-EW-A423 
        6.15        19.96        55.00        52.73        17.49        10.16 
TCGA-GM-A2DA TCGA-GM-A2DC TCGA-GM-A2DH TCGA-LL-A5YN TCGA-LL-A5YP TCGA-LL-A6FP 
      216.76        83.34        72.10        14.70        14.79        22.26 
TCGA-LL-A6FR TCGA-LL-A7T0 TCGA-LL-A8F5 TCGA-OL-A5D7 TCGA-OL-A5RW TCGA-OL-A5S0 
       16.08        12.36        14.73        58.52        36.36        20.38 
TCGA-OL-A6VO TCGA-PE-A5DD TCGA-PL-A8LX TCGA-PL-A8LZ TCGA-S3-A6ZF TCGA-S3-A6ZH 
       28.21        64.21         0.16         9.93        16.50        16.93 
TCGA-S3-AA14 TCGA-WT-AB41 TCGA-WT-AB44 TCGA-XX-A89A 
       14.96        52.96        29.03        16.04 

$`DEL PEAK 36(19P13.3) WILD-TYPE`
TCGA-3C-AAAU TCGA-3C-AALK TCGA-5L-AAT0 TCGA-5L-AAT1 TCGA-A1-A0SB TCGA-A1-A0SE 
      129.14        40.14        48.56        48.36         8.52        43.43 
TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI TCGA-A1-A0SM TCGA-A1-A0SN 
       48.10        14.27        47.24        20.88         7.96        39.32 
TCGA-A1-A0SO TCGA-A1-A0SP TCGA-A2-A04N TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04V 
       28.01        19.20       104.81        78.41       121.94        63.12 
TCGA-A2-A04W TCGA-A2-A04Y TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CO TCGA-A2-A0CP 
      101.98        36.13       136.73        99.12       114.81        92.48 
TCGA-A2-A0CQ TCGA-A2-A0CR TCGA-A2-A0CS TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV 
       88.60       107.93        75.55        75.25         5.19        98.99 
TCGA-A2-A0CX TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0EM TCGA-A2-A0EN 
       56.81        34.55        33.76        61.58       101.72       134.40 
TCGA-A2-A0EP TCGA-A2-A0EQ TCGA-A2-A0ER TCGA-A2-A0ES TCGA-A2-A0ET TCGA-A2-A0EU 
      107.61        79.76        74.40        72.00        35.05        34.29 
TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0EY TCGA-A2-A0ST TCGA-A2-A0SU 
       31.82        61.94        24.72        63.29        99.19        54.64 
TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0SY TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T2 
       27.12        44.88        44.28        17.52        17.13         8.38 
TCGA-A2-A0T4 TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YF 
       20.52        17.46        18.90        32.55        25.28        50.47 
TCGA-A2-A0YI TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A0YM TCGA-A2-A1FV TCGA-A2-A1FX 
       49.48        19.33        48.46        31.73        23.47        60.72 
TCGA-A2-A1FZ TCGA-A2-A1G1 TCGA-A2-A1G4 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25A 
       22.45        19.20        19.56        16.47        52.47       107.70 
TCGA-A2-A25B TCGA-A2-A25C TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD TCGA-A2-A3XS 
       42.44        17.19        10.59        20.88        39.65        33.93 
TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XY TCGA-A2-A4RW TCGA-A2-A4RX 
       29.98        32.75        49.48        34.98         7.30        24.39 
TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S2 TCGA-A7-A0CD TCGA-A7-A0CG TCGA-A7-A0CH 
       21.30        23.21        21.14        38.30        34.29        35.47 
TCGA-A7-A0CJ TCGA-A7-A0D9 TCGA-A7-A0DB TCGA-A7-A0DC TCGA-A7-A13F TCGA-A7-A13G 
       30.61        37.45        33.11        29.79        25.15        23.61 
TCGA-A7-A13H TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26H TCGA-A7-A26J TCGA-A7-A3IY 
       29.56        31.36        24.26        23.80        20.61        11.34 
TCGA-A7-A3J0 TCGA-A7-A3J1 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A426 TCGA-A7-A4SA 
       10.29        11.28        13.41        14.70        11.97        14.93 
TCGA-A7-A4SB TCGA-A7-A5ZW TCGA-A7-A5ZX TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06Y 
       13.74        10.72        11.05        13.02        13.02        26.01 
TCGA-A8-A07B TCGA-A8-A07E TCGA-A8-A07F TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07S 
       43.00        19.99        18.97        14.01        12.00         7.99 
TCGA-A8-A07U TCGA-A8-A07Z TCGA-A8-A082 TCGA-A8-A084 TCGA-A8-A086 TCGA-A8-A08A 
       24.99        45.07        18.05        15.06        13.02         0.99 
TCGA-A8-A08B TCGA-A8-A08C TCGA-A8-A08L TCGA-A8-A08P TCGA-A8-A08T TCGA-A8-A08X 
       38.01        28.96         9.99        31.00       112.08        43.00 
TCGA-A8-A08Z TCGA-A8-A091 TCGA-A8-A093 TCGA-A8-A095 TCGA-A8-A099 TCGA-A8-A09B 
       40.01        33.01        17.95        41.98         9.99        12.00 
TCGA-A8-A09D TCGA-A8-A09E TCGA-A8-A09N TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09V 
       50.04        49.05         1.02         8.98        19.04        15.02 
TCGA-A8-A09W TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A6 
        0.99        14.01        12.00        19.04        13.02        21.04 
TCGA-A8-A0A7 TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23E 
        0.99        27.02        17.03        38.04         0.95         2.37 
TCGA-AC-A23G TCGA-AC-A23H TCGA-AC-A2FB TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK 
       10.85         5.72        40.57        55.43        36.99        38.79 
TCGA-AC-A2FO TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3HN TCGA-AC-A3QP 
       50.70         0.92         2.27        32.45        16.31        22.19 
TCGA-AC-A3TN TCGA-AC-A3W5 TCGA-AC-A3W6 TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A5XS 
       14.99        16.57        19.79        23.24        24.79         1.55 
TCGA-AC-A62X TCGA-AC-A62Y TCGA-AC-A6IV TCGA-AC-A6IW TCGA-AC-A6NO TCGA-AC-A7VC 
       13.71        17.42        18.67        13.58         1.68         0.03 
TCGA-AC-A8OP TCGA-AC-A8OR TCGA-AC-A8OS TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A046 
       20.19         1.32         2.30         0.33         0.33         0.33 
TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04D TCGA-AN-A0AM TCGA-AN-A0FF TCGA-AN-A0FK 
        0.62         2.96         1.71         0.16         5.65         7.00 
TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FW TCGA-AN-A0FX TCGA-AN-A0XL TCGA-AN-A0XN 
        7.17         6.28         0.36         0.33         0.33         0.33 
TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XV 
       12.33         0.30         0.33         0.33         0.33         5.33 
TCGA-AO-A03L TCGA-AO-A03O TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V 
       80.28        81.63        68.75        47.87        58.95        29.13 
TCGA-AO-A0J5 TCGA-AO-A0J6 TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA 
       26.04        37.48        20.32        22.36        53.03        21.53 
TCGA-AO-A0JB TCGA-AO-A0JC TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JG TCGA-AO-A0JI 
       50.70        50.86        76.77        21.37        26.24        50.24 
TCGA-AO-A0JJ TCGA-AO-A0JL TCGA-AO-A124 TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 
       62.04        55.33       102.58        99.25       108.72       106.78 
TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12E TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP 
       90.58        98.27        57.30        28.37        14.73        82.62 
TCGA-AO-A1KQ TCGA-AO-A1KS TCGA-AQ-A04H TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AQ-A54O 
       61.87         0.53        24.79        15.62        32.52        32.91 
TCGA-AQ-A7U7 TCGA-AR-A0TR TCGA-AR-A0TV TCGA-AR-A0TX TCGA-AR-A0TY TCGA-AR-A0TZ 
       19.20         5.26        42.35        64.83        55.86       107.24 
TCGA-AR-A0U0 TCGA-AR-A0U4 TCGA-AR-A1AI TCGA-AR-A1AL TCGA-AR-A1AM TCGA-AR-A1AN 
       65.36        85.97        61.84        48.82        76.11        43.73 
TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AR TCGA-AR-A1AS TCGA-AR-A1AU TCGA-AR-A1AV 
       43.56        39.98        17.23        37.81        76.21        61.28 
TCGA-AR-A1AY TCGA-AR-A24K TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O 
       33.73        50.89        94.22        96.89        78.51        84.20 
TCGA-AR-A24P TCGA-AR-A24Q TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24V TCGA-AR-A24W 
        2.76       104.28        76.01        53.36        85.35        50.96 
TCGA-AR-A24X TCGA-AR-A24Z TCGA-AR-A251 TCGA-AR-A254 TCGA-AR-A255 TCGA-AR-A2LE 
       83.77        79.00        78.48        72.76        58.92       143.21 
TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LL TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO 
       20.25        62.86        66.15        52.11        38.17        39.39 
TCGA-AR-A2LQ TCGA-AR-A5QM TCGA-AR-A5QN TCGA-AR-A5QP TCGA-B6-A0I5 TCGA-B6-A0I9 
       40.54        54.74        16.04        20.45       149.59        12.13 
TCGA-B6-A0IA TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0IK 
      220.90        50.70        65.72       146.50       112.37        18.77 
TCGA-B6-A0IP TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RM 
      110.93       211.56        68.45       189.01       234.28        78.02 
TCGA-B6-A0RN TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RV TCGA-B6-A0WS 
      172.96       102.77       140.48        89.46       157.41        97.48 
TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WZ TCGA-B6-A0X0 
      188.68        79.63        18.35        21.47       129.57       129.70 
TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KC TCGA-B6-A1KI 
      186.48        28.27        68.94        58.88        43.59        73.51 
TCGA-B6-A2IU TCGA-B6-A401 TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AW TCGA-BH-A0AZ 
      170.17        85.35       103.63        71.15        20.45        28.50 
TCGA-BH-A0B0 TCGA-BH-A0B2 TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0B7 TCGA-BH-A0BA 
       46.95        40.83        39.16        48.36        56.98        37.22 
TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BJ TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BQ 
       32.02        18.21        21.70        61.68        35.67        27.19 
TCGA-BH-A0BS TCGA-BH-A0BV TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0C3 
       53.95        49.94        49.05        41.75        44.02        48.13 
TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DI 
       42.90        45.83        31.17        23.44        38.01        22.13 
TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DO TCGA-BH-A0DP TCGA-BH-A0DS TCGA-BH-A0DT 
       13.91        48.23        17.26        15.65         2.56        38.47 
TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E7 
       67.86        47.41        16.27        15.68        14.30        44.81 
TCGA-BH-A0E9 TCGA-BH-A0EA TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ 
       46.19        32.58        31.00        24.43        30.35        10.78 
TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0HB 
       37.78        35.51        24.56        41.00        52.96        26.50 
TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0RX 
       20.38         5.85         2.50        13.61        36.85         5.59 
TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A18G TCGA-BH-A18M 
       23.93        24.95        42.35        44.81         2.01        72.56 
TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18R TCGA-BH-A18T TCGA-BH-A1EO TCGA-BH-A1ES 
       37.74        30.28        37.55         7.36        91.99       113.82 
TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EX TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F2 
       82.85        42.28        49.58        17.69        25.81        31.53 
TCGA-BH-A1F5 TCGA-BH-A1F6 TCGA-BH-A1FB TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FG 
       89.16        97.48       120.62        33.17        74.73       122.89 
TCGA-BH-A1FH TCGA-BH-A1FL TCGA-BH-A1FR TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A203 
       36.92        55.00       144.59        28.14        26.14        38.60 
TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V 
       10.65         6.44        20.12        10.52       109.28         8.94 
TCGA-BH-A5J0 TCGA-BH-A6R8 TCGA-BH-A6R9 TCGA-BH-A8FY TCGA-BH-A8G0 TCGA-BH-AB28 
       23.51         9.63         5.26         9.70        21.76         9.44 
TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12V TCGA-C8-A12X TCGA-C8-A131 
       11.77        12.66        11.77        12.66        12.66         2.24 
TCGA-C8-A134 TCGA-C8-A137 TCGA-C8-A1HE TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A26V 
        1.12         4.11        12.33        11.34        11.28         0.30 
TCGA-C8-A26W TCGA-C8-A26X TCGA-C8-A274 TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A27B 
        0.23         0.36         9.53         0.03         9.50         0.99 
TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-D8-A13Z TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A143 
        0.03         0.23        20.88        20.58        13.97        14.17 
TCGA-D8-A145 TCGA-D8-A146 TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JB 
       13.48        21.14        14.17        17.49        16.50        18.71 
TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JG TCGA-D8-A1JH TCGA-D8-A1JK TCGA-D8-A1JN 
       18.15        18.90        12.03        14.01        20.12        20.38 
TCGA-D8-A1JP TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X6 TCGA-D8-A1X7 
       21.01        12.20        13.32        14.70        17.79        16.73 
TCGA-D8-A1X8 TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XD TCGA-D8-A1XF TCGA-D8-A1XG 
       25.74        18.15        12.39        17.16        15.22        14.73 
TCGA-D8-A1XK TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XU 
       14.50        17.69        15.55        15.85        16.31        12.99 
TCGA-D8-A1XV TCGA-D8-A1XW TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A27E TCGA-D8-A27F 
       15.16        12.66        15.52         9.93        17.42        16.04 
TCGA-D8-A27H TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27P TCGA-D8-A27T 
       13.05        14.43         9.44        16.41         0.76        13.08 
TCGA-D8-A27V TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-D8-A73U TCGA-D8-A73W 
       12.53        33.37        18.51        21.67        16.18         8.02 
TCGA-D8-A73X TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A10A TCGA-E2-A10B 
       12.10        43.00        34.42        27.52        40.41        37.51 
TCGA-E2-A10C TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14Q TCGA-E2-A14S 
       40.11        28.44        28.87        47.15        38.24        33.17 
TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14W TCGA-E2-A14X TCGA-E2-A14Z 
       33.30        43.33        34.26        32.02        31.96        18.51 
TCGA-E2-A153 TCGA-E2-A154 TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A15C TCGA-E2-A15D 
       23.24        19.43        21.04        23.87        22.82        17.29 
TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L 
       21.63        18.21        17.42        19.40         9.04        20.58 
TCGA-E2-A15O TCGA-E2-A15R TCGA-E2-A15T TCGA-E2-A1B0 TCGA-E2-A1B4 TCGA-E2-A1B5 
       13.02        17.06        14.99        53.62        33.01        32.35 
TCGA-E2-A1B6 TCGA-E2-A1BC TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IG 
       28.50        16.47        17.10        38.30        37.41        32.78 
TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IO TCGA-E2-A1IU TCGA-E2-A1L6 
       28.44        22.65         3.88        20.98        11.08        54.18 
TCGA-E2-A1L7 TCGA-E2-A1L8 TCGA-E2-A1L9 TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LE 
       27.42        39.62        19.66        24.59        40.47        28.90 
TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A2P5 TCGA-E2-A2P6 TCGA-E2-A3DX 
      106.75       102.61         8.75        16.93         5.52        15.72 
TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A574 TCGA-E2-A576 TCGA-E9-A1N3 TCGA-E9-A1N4 
        8.28        30.61        26.56        34.29        34.82        32.88 
TCGA-E9-A1N5 TCGA-E9-A1NA TCGA-E9-A1NE TCGA-E9-A1R0 TCGA-E9-A1R4 TCGA-E9-A1R5 
       36.82        36.56        35.77        28.27         6.12         3.02 
TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RA TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RF 
        2.76        21.21        32.09         1.12        34.65         6.58 
TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22E TCGA-E9-A22H 
       32.05        12.53        13.32        39.09        12.89        20.71 
TCGA-E9-A243 TCGA-E9-A247 TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A2JT TCGA-E9-A3HO 
       17.06        27.22         7.13        24.56         0.76        26.07 
TCGA-E9-A3Q9 TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A54Y TCGA-E9-A5FL TCGA-E9-A5UP 
       18.41        15.72        12.33        23.84         0.79        14.40 
TCGA-E9-A6HE TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J2 
       15.39        12.20        39.72         8.48        18.21        13.25 
TCGA-EW-A1J3 TCGA-EW-A1J5 TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P3 TCGA-EW-A1P5 
       16.57        15.68        41.13        39.78        52.96        23.11 
TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1PA TCGA-EW-A1PB TCGA-EW-A1PD TCGA-EW-A1PE 
       18.48        30.08        18.90        19.99        13.94        10.52 
TCGA-EW-A1PF TCGA-EW-A1PG TCGA-EW-A2FV TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A424 
       14.43        34.55        25.91        22.09        34.03        23.51 
TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2D9 TCGA-GM-A2DB TCGA-GM-A2DD TCGA-GM-A2DF 
        7.40       109.87        59.57        79.10        75.02        70.85 
TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A2DO 
       85.15        86.96       115.69       106.06       101.62        85.35 
TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XL TCGA-GM-A3XN TCGA-GM-A4E0 
      110.50        38.20        43.73        69.30        66.38        72.03 
TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2NL TCGA-HN-A2OB TCGA-JL-A3YW TCGA-JL-A3YX 
       13.55        18.12         2.60        62.43        11.84        11.57 
TCGA-LD-A66U TCGA-LD-A74U TCGA-LD-A7W5 TCGA-LD-A7W6 TCGA-LD-A9QF TCGA-LL-A440 
       21.24        13.22         7.10        13.28        10.62        24.95 
TCGA-LL-A441 TCGA-LL-A442 TCGA-LL-A50Y TCGA-LL-A5YL TCGA-LL-A5YM TCGA-LL-A5YO 
       11.44        10.95        25.05        17.06        15.32        14.47 
TCGA-LL-A6FQ TCGA-LL-A73Y TCGA-LL-A73Z TCGA-LL-A740 TCGA-LL-A7SZ TCGA-LL-A9Q3 
        2.63        15.68         7.46        14.50        14.70        14.07 
TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5D8 TCGA-OL-A5DA 
       27.91        22.39         2.10        36.30        31.99        58.62 
TCGA-OL-A5RU TCGA-OL-A5RV TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A66H 
       40.08        34.92        28.87        24.72        22.32        26.70 
TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66K TCGA-OL-A66L TCGA-OL-A66N TCGA-OL-A66O 
       23.47        65.62        41.92        42.77        26.04        17.36 
TCGA-OL-A66P TCGA-OL-A6VQ TCGA-OL-A6VR TCGA-OL-A97C TCGA-PE-A5DC TCGA-PE-A5DE 
       14.07        19.73        40.11         8.91        47.01        86.96 
TCGA-PL-A8LY TCGA-S3-A6ZG TCGA-S3-AA0Z TCGA-S3-AA10 TCGA-S3-AA11 TCGA-S3-AA12 
        0.26        13.12        16.80        15.39        13.84        15.35 
TCGA-S3-AA15 TCGA-S3-AA17 TCGA-UL-AAZ6 TCGA-UU-A93S TCGA-W8-A86G TCGA-XX-A899 
       13.84        13.94        17.03         3.81        11.41        15.35 
TCGA-Z7-A8R5 TCGA-Z7-A8R6 
      108.07       107.05 

  DEL PEAK 36(19P13.3) MUTATED DEL PEAK 36(19P13.3) WILD-TYPE 
                          0.16                           0.03 
  DEL PEAK 36(19P13.3) MUTATED DEL PEAK 36(19P13.3) WILD-TYPE 
                        216.76                         234.28 
  DEL PEAK 36(19P13.3) MUTATED DEL PEAK 36(19P13.3) WILD-TYPE 
                        23.065                         24.950 
[1] "0.2 - 216.8 (23.1)" "0.0 - 234.3 (24.9)"
[1] "hr=" "1.3"
D65V2, continuous
                                vv
clus                             STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  DEL PEAK 36(19P13.3) MUTATED        28       22        2        0       126
  DEL PEAK 36(19P13.3) WILD-TYPE      61       59        6        3       227
                                vv
clus                             STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  DEL PEAK 36(19P13.3) MUTATED          83         1         49         11
  DEL PEAK 36(19P13.3) WILD-TYPE       162         1        101         18
                                vv
clus                             STAGE IIIC STAGE IV STAGE TIS STAGE X
  DEL PEAK 36(19P13.3) MUTATED           22        8         0       3
  DEL PEAK 36(19P13.3) WILD-TYPE         41       12         1      10
D65V3, multiclass
            clus
vv           DEL PEAK 36(19P13.3) MUTATED DEL PEAK 36(19P13.3) WILD-TYPE
  STAGE I                              28                             61
  STAGE IA                             22                             59
  STAGE IB                              2                              6
  STAGE II                              0                              3
  STAGE IIA                           126                            227
  STAGE IIB                            83                            162
  STAGE III                             1                              1
  STAGE IIIA                           49                            101
  STAGE IIIB                           11                             18
  STAGE IIIC                           22                             41
  STAGE IV                              8                             12
  STAGE TIS                             0                              1
  STAGE X                               3                             10
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              T1  T2  T3  T4
  DEL PEAK 36(19P13.3) MUTATED    78 227  36  15
  DEL PEAK 36(19P13.3) WILD-TYPE 194 389  94  25
D65V4, multiclass
    clus
vv   DEL PEAK 36(19P13.3) MUTATED DEL PEAK 36(19P13.3) WILD-TYPE
  T1                           78                            194
  T2                          227                            389
  T3                           36                             94
  T4                           15                             25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              N0  N1  N2  N3
  DEL PEAK 36(19P13.3) MUTATED   170 114  40  26
  DEL PEAK 36(19P13.3) WILD-TYPE 331 236  77  49
D65V5, multiclass
    clus
vv   DEL PEAK 36(19P13.3) MUTATED DEL PEAK 36(19P13.3) WILD-TYPE
  N0                          170                            331
  N1                          114                            236
  N2                           40                             77
  N3                           26                             49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D65V6, binary
                                cls
clus                               0   1
  DEL PEAK 36(19P13.3) MUTATED   300   8
  DEL PEAK 36(19P13.3) WILD-TYPE 579  13
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 36(19P13.3) MUTATED    300    8
  DEL PEAK 36(19P13.3) WILD-TYPE  579   13
   clus
vv  DEL PEAK 36(19P13.3) MUTATED DEL PEAK 36(19P13.3) WILD-TYPE
  0                          300                            579
  1                            8                             13
[1] 2 2
[1] FALSE
D65V7, binary
                                cls
clus                               0   1
  DEL PEAK 36(19P13.3) MUTATED   354   2
  DEL PEAK 36(19P13.3) WILD-TYPE 697   9
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 36(19P13.3) MUTATED    354    2
  DEL PEAK 36(19P13.3) WILD-TYPE  697    9
        clus
vv       DEL PEAK 36(19P13.3) MUTATED DEL PEAK 36(19P13.3) WILD-TYPE
  FEMALE                          354                            697
  MALE                              2                              9
[1] 2 2
[1] FALSE
                                vv
clus                             INFILTRATING CARCINOMA NOS
  DEL PEAK 36(19P13.3) MUTATED                            1
  DEL PEAK 36(19P13.3) WILD-TYPE                          0
                                vv
clus                             INFILTRATING DUCTAL CARCINOMA
  DEL PEAK 36(19P13.3) MUTATED                             295
  DEL PEAK 36(19P13.3) WILD-TYPE                           468
                                vv
clus                             INFILTRATING LOBULAR CARCINOMA
  DEL PEAK 36(19P13.3) MUTATED                               24
  DEL PEAK 36(19P13.3) WILD-TYPE                            168
                                vv
clus                             MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  DEL PEAK 36(19P13.3) MUTATED                     5                     1
  DEL PEAK 36(19P13.3) WILD-TYPE                   1                     3
                                vv
clus                             MIXED HISTOLOGY (PLEASE SPECIFY)
  DEL PEAK 36(19P13.3) MUTATED                                  9
  DEL PEAK 36(19P13.3) WILD-TYPE                               21
                                vv
clus                             MUCINOUS CARCINOMA OTHER  SPECIFY
  DEL PEAK 36(19P13.3) MUTATED                    5             15
  DEL PEAK 36(19P13.3) WILD-TYPE                 12             33
D65V8, multiclass
                                  clus
vv                                 DEL PEAK 36(19P13.3) MUTATED
  INFILTRATING CARCINOMA NOS                                  1
  INFILTRATING DUCTAL CARCINOMA                             295
  INFILTRATING LOBULAR CARCINOMA                             24
  MEDULLARY CARCINOMA                                         5
  METAPLASTIC CARCINOMA                                       1
  MIXED HISTOLOGY (PLEASE SPECIFY)                            9
  MUCINOUS CARCINOMA                                          5
  OTHER  SPECIFY                                             15
                                  clus
vv                                 DEL PEAK 36(19P13.3) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                    0
  INFILTRATING DUCTAL CARCINOMA                               468
  INFILTRATING LOBULAR CARCINOMA                              168
  MEDULLARY CARCINOMA                                           1
  METAPLASTIC CARCINOMA                                         3
  MIXED HISTOLOGY (PLEASE SPECIFY)                             21
  MUCINOUS CARCINOMA                                           12
  OTHER  SPECIFY                                               33
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D65V9, binary
                                cls
clus                               0   1
  DEL PEAK 36(19P13.3) MUTATED    98 258
  DEL PEAK 36(19P13.3) WILD-TYPE 190 516
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 36(19P13.3) MUTATED     98  258
  DEL PEAK 36(19P13.3) WILD-TYPE  190  516
     clus
vv    DEL PEAK 36(19P13.3) MUTATED DEL PEAK 36(19P13.3) WILD-TYPE
  NO                            98                            190
  YES                          258                            516
[1] 2 2
[1] FALSE
D65V10, continuous
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 36(19P13.3) MUTATED                                  0    28
  DEL PEAK 36(19P13.3) WILD-TYPE                                1    32
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 36(19P13.3) MUTATED                          72   223
  DEL PEAK 36(19P13.3) WILD-TYPE                        98   513
D65V11, multiclass
                                  clus
vv                                 DEL PEAK 36(19P13.3) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            0
  ASIAN                                                      28
  BLACK OR AFRICAN AMERICAN                                  72
  WHITE                                                     223
                                  clus
vv                                 DEL PEAK 36(19P13.3) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              1
  ASIAN                                                        32
  BLACK OR AFRICAN AMERICAN                                    98
  WHITE                                                       513
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D65V12, binary
                                cls
clus                               0   1
  DEL PEAK 36(19P13.3) MUTATED    12 290
  DEL PEAK 36(19P13.3) WILD-TYPE  26 568
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 36(19P13.3) MUTATED     12  290
  DEL PEAK 36(19P13.3) WILD-TYPE   26  568
                        clus
vv                       DEL PEAK 36(19P13.3) MUTATED
  HISPANIC OR LATINO                               12
  NOT HISPANIC OR LATINO                          290
                        clus
vv                       DEL PEAK 36(19P13.3) WILD-TYPE
  HISPANIC OR LATINO                                 26
  NOT HISPANIC OR LATINO                            568
[1] 2 2
[1] FALSE

Clustering(66) Variable = DEL PEAK 37(19Q13.32) MUTATION ANALYSIS
D66V1, survival
                                 sevent
clus2                               0   1
  DEL PEAK 37(19Q13.32) MUTATED   177  33
  DEL PEAK 37(19Q13.32) WILD-TYPE 739  95
  DEL PEAK 37(19Q13.32) MUTATED DEL PEAK 37(19Q13.32) WILD-TYPE 
                            210                             834 
  DEL PEAK 37(19Q13.32) MUTATED DEL PEAK 37(19Q13.32) WILD-TYPE 
                             33                              95 
$`DEL PEAK 37(19Q13.32) MUTATED`
TCGA-5L-AAT0 TCGA-5T-A9QA TCGA-A1-A0SO TCGA-A1-A0SQ TCGA-A2-A04U TCGA-A2-A04X 
       48.56         9.96        28.01        18.21        87.25        55.43 
TCGA-A2-A0CW TCGA-A2-A0D1 TCGA-A2-A0EO TCGA-A2-A0SV TCGA-A2-A0SX TCGA-A2-A0T7 
      107.93        34.55        80.28        27.12        50.43        20.75 
TCGA-A2-A0YG TCGA-A2-A0YJ TCGA-A2-A0YM TCGA-A2-A0YT TCGA-A2-A1FW TCGA-A2-A1G1 
       21.90        18.61        31.73        23.77        17.36        19.20 
TCGA-A2-A3XT TCGA-A7-A0CJ TCGA-A7-A13E TCGA-A7-A2KD TCGA-A7-A3J1 TCGA-A7-A4SE 
       83.01        30.61        20.19        22.32        11.28        21.17 
TCGA-A7-A56D TCGA-A7-A6VY TCGA-A8-A06Q TCGA-A8-A06R TCGA-A8-A06T TCGA-A8-A076 
       14.73         8.75         1.02        17.98        53.06        53.98 
TCGA-A8-A07G TCGA-A8-A07O TCGA-A8-A08B TCGA-A8-A08F TCGA-A8-A08G TCGA-A8-A08L 
       18.97         9.99        38.01        33.01        19.96         9.99 
TCGA-A8-A08S TCGA-A8-A09C TCGA-A8-A09I TCGA-A8-A09M TCGA-A8-A09N TCGA-AC-A23C 
       33.01         1.02        45.07        33.07         1.02         0.95 
TCGA-AC-A2FM TCGA-AC-A62V TCGA-AC-A8OQ TCGA-AN-A041 TCGA-AN-A0AS TCGA-AN-A0AT 
       26.04        11.44         1.12         0.23         0.33         0.33 
TCGA-AN-A0FV TCGA-AN-A0FZ TCGA-AO-A03L TCGA-AO-A03N TCGA-AO-A03P TCGA-AO-A03V 
        0.33         0.33        80.28        66.77        95.70        29.13 
TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0JD TCGA-AO-A0JE TCGA-AO-A0JL TCGA-AO-A124 
       32.78        21.40        72.00        76.77        55.33       102.58 
TCGA-AO-A129 TCGA-AO-A1KQ TCGA-AO-A1KT TCGA-AQ-A04H TCGA-AQ-A04L TCGA-AQ-A0Y5 
      108.03        61.87        17.79        24.79       130.09         5.65 
TCGA-AR-A0TY TCGA-AR-A0U0 TCGA-AR-A0U2 TCGA-AR-A0U3 TCGA-AR-A0U4 TCGA-AR-A1AJ 
       55.86        65.36        83.87       114.02        85.97        52.77 
TCGA-AR-A24H TCGA-AR-A24L TCGA-AR-A24R TCGA-AR-A24S TCGA-AR-A251 TCGA-AR-A252 
      160.90        94.22        87.22        97.84        78.48        73.18 
TCGA-AR-A2LK TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0IB TCGA-B6-A0IQ TCGA-B6-A0RV 
       54.21        10.59        77.62       129.57       140.88       157.41 
TCGA-B6-A0WX TCGA-B6-A0WY TCGA-B6-A0X1 TCGA-B6-A1KF TCGA-B6-A1KN TCGA-B6-A402 
       21.47       113.79       186.48       101.52       139.17        74.99 
TCGA-B6-A408 TCGA-BH-A0AV TCGA-BH-A0B9 TCGA-BH-A0BP TCGA-BH-A0BR TCGA-BH-A0C0 
       68.12        59.84        51.68        48.69        53.69        41.75 
TCGA-BH-A0C7 TCGA-BH-A0DQ TCGA-BH-A0EB TCGA-BH-A0EE TCGA-BH-A0H7 TCGA-BH-A0HY 
       42.90         3.22        24.49        31.00        23.08        50.79 
TCGA-BH-A0WA TCGA-BH-A18F TCGA-BH-A18I TCGA-BH-A18K TCGA-BH-A18S TCGA-BH-A18T 
       23.05         8.81         7.23        90.84        66.05         7.36 
TCGA-BH-A18V TCGA-BH-A1ES TCGA-BH-A1EY TCGA-BH-A1F6 TCGA-BH-A1FC TCGA-BH-A1FU 
       51.16       113.82        17.69        97.48       114.15        72.07 
TCGA-BH-A204 TCGA-BH-A209 TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-C8-A12M TCGA-C8-A12P 
       83.31       130.16        18.64        23.51        11.77        11.77 
TCGA-C8-A12Q TCGA-C8-A12U TCGA-C8-A12Z TCGA-C8-A132 TCGA-C8-A1HF TCGA-C8-A1HL 
       12.66        12.66         0.39         1.87        10.92        10.42 
TCGA-C8-A26X TCGA-C8-A26Y TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A8HP 
        0.36         0.43         9.50        12.20         0.99        13.02 
TCGA-C8-A8HQ TCGA-C8-A9FZ TCGA-D8-A13Y TCGA-D8-A140 TCGA-D8-A147 TCGA-D8-A1JC 
       12.49        19.46        11.90        13.25        19.20        15.78 
TCGA-D8-A1JG TCGA-D8-A1JI TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JP TCGA-D8-A1XA 
       12.03        18.97        20.09        20.12        21.01        27.58 
TCGA-D8-A1XD TCGA-D8-A1XK TCGA-D8-A1XQ TCGA-D8-A1XT TCGA-D8-A1XY TCGA-D8-A1XZ 
       17.16        14.50        16.41         6.35        16.54        15.32 
TCGA-D8-A1Y3 TCGA-D8-A27F TCGA-D8-A27R TCGA-E2-A109 TCGA-E2-A14O TCGA-E2-A14P 
       14.14        16.04        10.09        46.59        44.68        40.96 
TCGA-E2-A14R TCGA-E2-A159 TCGA-E2-A15H TCGA-E2-A15S TCGA-E2-A1L7 TCGA-E2-A1LL 
       38.60        25.05        12.92        14.07        27.42        43.04 
TCGA-E2-A573 TCGA-E9-A1N6 TCGA-E9-A1NA TCGA-E9-A1NF TCGA-E9-A1NI TCGA-E9-A1QZ 
       34.92        13.48        36.56        35.24         9.86        11.90 
TCGA-E9-A1R3 TCGA-E9-A1R7 TCGA-E9-A1RB TCGA-E9-A1RG TCGA-E9-A1RH TCGA-E9-A226 
        2.56        21.21        32.09        21.27        34.59        34.13 
TCGA-E9-A22A TCGA-E9-A22G TCGA-E9-A243 TCGA-E9-A244 TCGA-E9-A3HO TCGA-E9-A3QA 
       39.09        23.51        17.06         0.69        26.07        30.18 
TCGA-E9-A5UO TCGA-EW-A1OW TCGA-EW-A1OX TCGA-EW-A1OY TCGA-EW-A1OZ TCGA-EW-A1PA 
       13.81        22.82        29.95        29.85        40.41        18.90 
TCGA-EW-A1PC TCGA-EW-A1PF TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A3U0 TCGA-GM-A2DB 
        6.15        14.43        55.00        52.73        17.49        79.10 
TCGA-GM-A2DF TCGA-GM-A2DH TCGA-HN-A2NL TCGA-LL-A5YL TCGA-LL-A6FR TCGA-LL-A7T0 
       70.85        72.10         2.60        17.06        16.08        12.36 
TCGA-OL-A5D7 TCGA-OL-A5RY TCGA-OL-A5S0 TCGA-OL-A6VO TCGA-PE-A5DC TCGA-PL-A8LX 
       58.52        24.72        20.38        28.21        47.01         0.16 
TCGA-S3-A6ZF TCGA-S3-AA14 TCGA-UL-AAZ6 TCGA-UU-A93S TCGA-WT-AB41 TCGA-WT-AB44 
       16.50        14.96        17.03         3.81        52.96        29.03 

$`DEL PEAK 37(19Q13.32) WILD-TYPE`
TCGA-3C-AAAU TCGA-3C-AALI TCGA-3C-AALJ TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT1 
      129.14       131.67        42.81        40.14        11.44        48.36 
TCGA-A1-A0SB TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH 
        8.52        14.37        43.43        48.10        14.27        47.24 
TCGA-A1-A0SI TCGA-A1-A0SJ TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SP 
       20.88        13.68        31.79         7.96        39.32        19.20 
TCGA-A2-A04N TCGA-A2-A04P TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04V 
      104.81        18.02        78.41       121.94        73.84        63.12 
TCGA-A2-A04W TCGA-A2-A04Y TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO 
      101.98        36.13       136.73        99.12        24.79       114.81 
TCGA-A2-A0CP TCGA-A2-A0CQ TCGA-A2-A0CR TCGA-A2-A0CS TCGA-A2-A0CT TCGA-A2-A0CU 
       92.48        88.60       107.93        75.55        75.25         5.19 
TCGA-A2-A0CV TCGA-A2-A0CX TCGA-A2-A0D0 TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0D4 
       98.99        56.81        67.33        33.76        61.58        25.22 
TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EP TCGA-A2-A0EQ TCGA-A2-A0ER TCGA-A2-A0ES 
      101.72       134.40       107.61        79.76        74.40        72.00 
TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0EY 
       35.05        34.29        31.82        61.94        24.72        63.29 
TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SW TCGA-A2-A0SY TCGA-A2-A0T0 TCGA-A2-A0T1 
       99.19        54.64        44.88        44.28        17.52        17.13 
TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T4 TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0YC 
        8.38        49.84        20.52        17.46        18.90        32.55 
TCGA-A2-A0YD TCGA-A2-A0YE TCGA-A2-A0YF TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YK 
       25.28        18.21        50.47        21.67        49.48        19.33 
TCGA-A2-A0YL TCGA-A2-A1FV TCGA-A2-A1FX TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G4 
       48.46        23.47        60.72        22.45        20.25        19.56 
TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25A TCGA-A2-A25B TCGA-A2-A25C TCGA-A2-A25D 
       16.47        52.47       107.70        42.44        17.19        18.15 
TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD TCGA-A2-A3XS TCGA-A2-A3XU 
      105.34        10.59        20.88        39.65        33.93        29.98 
TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A3Y0 
       32.75        49.48        47.31        34.98        50.37        38.37 
TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S2 
        7.30        24.39        21.30        23.21        26.96        21.14 
TCGA-A2-A4S3 TCGA-A7-A0CD TCGA-A7-A0CE TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0D9 
       21.90        38.30        35.31        34.29        35.47        37.45 
TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A0DC TCGA-A7-A13D TCGA-A7-A13F TCGA-A7-A13G 
       35.67        33.11        29.79        31.73        25.15        23.61 
TCGA-A7-A13H TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26G TCGA-A7-A26H TCGA-A7-A26I 
       29.56        31.36        24.26        23.74        23.80        21.73 
TCGA-A7-A26J TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3RF TCGA-A7-A425 
       20.61        11.34        10.59        10.29        13.41        14.70 
TCGA-A7-A426 TCGA-A7-A4SA TCGA-A7-A4SB TCGA-A7-A4SD TCGA-A7-A4SF TCGA-A7-A5ZV 
       11.97        14.93        13.74        14.50        17.92        12.10 
TCGA-A7-A5ZW TCGA-A7-A5ZX TCGA-A7-A6VV TCGA-A7-A6VW TCGA-A7-A6VX TCGA-A8-A06O 
       10.72        11.05        10.29         9.37        10.42        13.02 
TCGA-A8-A06P TCGA-A8-A06U TCGA-A8-A06X TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A075 
       13.02        29.03        31.00        26.01         1.02        17.03 
TCGA-A8-A079 TCGA-A8-A07B TCGA-A8-A07E TCGA-A8-A07F TCGA-A8-A07I TCGA-A8-A07J 
        9.01        43.00        19.99        18.97        14.01        12.00 
TCGA-A8-A07L TCGA-A8-A07P TCGA-A8-A07R TCGA-A8-A07S TCGA-A8-A07U TCGA-A8-A07W 
       32.05        10.98         8.98         7.99        24.99         9.99 
TCGA-A8-A07Z TCGA-A8-A082 TCGA-A8-A084 TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A 
       45.07        18.05        15.06        36.95        13.02         0.99 
TCGA-A8-A08C TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08O TCGA-A8-A08P TCGA-A8-A08R 
       28.96        12.00        37.05        31.00        31.00         0.99 
TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A08Z TCGA-A8-A091 TCGA-A8-A092 TCGA-A8-A093 
      112.08        43.00        40.01        33.01        30.97        17.95 
TCGA-A8-A095 TCGA-A8-A097 TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09D 
       41.98        12.00         9.99         9.99        12.00        50.04 
TCGA-A8-A09E TCGA-A8-A09K TCGA-A8-A09Q TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09V 
       49.05        29.98        25.02         8.98        19.04        15.02 
TCGA-A8-A09W TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A6 
        0.99        14.01        12.00        19.04        13.02        21.04 
TCGA-A8-A0A7 TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23E TCGA-AC-A23G 
        0.99        27.02        17.03        38.04         2.37        10.85 
TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FF 
        5.72         1.48        38.53        99.35        40.57        55.43 
TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FO TCGA-AC-A2QH TCGA-AC-A2QI TCGA-AC-A2QJ 
       36.99        38.79        50.70        33.04         0.92         2.27 
TCGA-AC-A3BB TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3TN TCGA-AC-A3W5 
       32.45        16.31        14.83        22.19        14.99        16.57 
TCGA-AC-A3W6 TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A5XS TCGA-AC-A62X TCGA-AC-A62Y 
       19.79        23.24        24.79         1.55        13.71        17.42 
TCGA-AC-A6IV TCGA-AC-A6IW TCGA-AC-A6IX TCGA-AC-A6NO TCGA-AC-A7VB TCGA-AC-A7VC 
       18.67        13.58        12.26         1.68         8.22         0.03 
TCGA-AC-A8OP TCGA-AC-A8OR TCGA-AC-A8OS TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A046 
       20.19         1.32         2.30         0.33         0.33         0.33 
TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AK 
        0.62         2.96         1.78         1.71         9.96         7.36 
TCGA-AN-A0AL TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FJ 
        6.51         0.16         0.33         6.44         5.65         7.96 
TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FW 
        7.00         7.59         7.17         6.28         7.04         0.36 
TCGA-AN-A0FX TCGA-AN-A0FY TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XP 
        0.33         0.33         0.33         0.33        12.33         0.30 
TCGA-AN-A0XR TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AN-A0XV TCGA-AN-A0XW 
        0.33         0.33         0.33         0.33         5.33         5.59 
TCGA-AO-A03M TCGA-AO-A03O TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A0J4 
       61.35        81.63        68.75        47.87        58.95        52.18 
TCGA-AO-A0J5 TCGA-AO-A0J6 TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA 
       26.04        37.48        20.32        22.36        53.03        21.53 
TCGA-AO-A0JB TCGA-AO-A0JC TCGA-AO-A0JF TCGA-AO-A0JG TCGA-AO-A0JI TCGA-AO-A0JJ 
       50.70        50.86        21.37        26.24        50.24        62.04 
TCGA-AO-A0JM TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 TCGA-AO-A12A TCGA-AO-A12B 
       71.80        99.25       108.72       106.78        90.58        98.27 
TCGA-AO-A12D TCGA-AO-A12E TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO 
       64.04        57.30        48.36        41.62        28.37        14.73 
TCGA-AO-A1KP TCGA-AO-A1KR TCGA-AO-A1KS TCGA-AQ-A04J TCGA-AQ-A1H2 TCGA-AQ-A1H3 
       82.62        70.39         0.53        26.93        15.62        32.52 
TCGA-AQ-A54N TCGA-AQ-A54O TCGA-AQ-A7U7 TCGA-AR-A0TP TCGA-AR-A0TQ TCGA-AR-A0TR 
        2.56        32.91        19.20       111.32        73.64         5.26 
TCGA-AR-A0TS TCGA-AR-A0TT TCGA-AR-A0TV TCGA-AR-A0TW TCGA-AR-A0TX TCGA-AR-A0TZ 
       74.79        86.66        42.35        98.93        64.83       107.24 
TCGA-AR-A0U1 TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AM 
      101.95        75.55        61.84        51.25        48.82        76.11 
TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AQ TCGA-AR-A1AR TCGA-AR-A1AS 
       43.73        43.56        39.98        43.07        17.23        37.81 
TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24K 
       76.21        61.28        63.62        62.14        33.73        50.89 
TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24Q TCGA-AR-A24T 
       96.89        78.51        84.20         2.76       104.28        76.01 
TCGA-AR-A24U TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A24Z TCGA-AR-A250 
       53.36        85.35        50.96        83.77        79.00        89.00 
TCGA-AR-A254 TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ 
       72.76        58.92        93.83       143.21        20.25        62.86 
TCGA-AR-A2LL TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A2LR 
       66.15        52.11        38.17        39.39        40.54        20.38 
TCGA-AR-A5QM TCGA-AR-A5QN TCGA-AR-A5QP TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0I9 
       54.74        16.04        20.45       143.38       149.59        12.13 
TCGA-B6-A0IA TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0IJ 
      220.90        50.70        65.72       146.50       112.37       176.98 
TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IO TCGA-B6-A0IP TCGA-B6-A0RE 
       18.77       126.12        84.59       110.14       110.93       211.56 
TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RL TCGA-B6-A0RM TCGA-B6-A0RN 
       68.45       189.01       234.28        81.17        78.02       172.96 
TCGA-B6-A0RO TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RS TCGA-B6-A0RT TCGA-B6-A0RU 
      162.05       102.77       140.48       100.70        89.46       131.21 
TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0WZ TCGA-B6-A0X0 
       97.48       188.68        79.63        18.35       129.57       129.70 
TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KC TCGA-B6-A1KI TCGA-B6-A2IU 
       28.27        68.94        58.88        43.59        73.51       170.17 
TCGA-B6-A401 TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AU TCGA-BH-A0AW TCGA-BH-A0AY 
       85.35       103.63        71.15        24.53        20.45        25.55 
TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B2 TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B5 
       28.50        46.95        40.83        39.55        39.16        48.36 
TCGA-BH-A0B6 TCGA-BH-A0B7 TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BF 
       56.94        56.98        37.22        32.02        18.21        25.71 
TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BQ 
       24.85        21.70        44.05        61.68        35.67        27.19 
TCGA-BH-A0BS TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0BW TCGA-BH-A0BZ TCGA-BH-A0C1 
       53.95        45.57        49.94        11.67        49.05        44.02 
TCGA-BH-A0C3 TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DI 
       48.13        45.83        31.17        23.44        38.01        22.13 
TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DO TCGA-BH-A0DP TCGA-BH-A0DS TCGA-BH-A0DT 
       13.91        48.23        17.26        15.65         2.56        38.47 
TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E2 
       67.86        47.41        16.27         4.41        15.68        14.30 
TCGA-BH-A0E6 TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EA TCGA-BH-A0EI TCGA-BH-A0GY 
        9.63        44.81        46.19        32.58        24.43        30.35 
TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H9 
       10.78        15.16        37.78        35.51        24.56        41.00 
TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HO TCGA-BH-A0HP 
       52.96        26.50        20.38         5.85         2.50        13.61 
TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0RX TCGA-BH-A0W3 
       36.85        12.89        51.32        27.25         5.59        23.93 
TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A18G TCGA-BH-A18J TCGA-BH-A18L 
       24.95        42.35        44.81         2.01        20.12        26.66 
TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18R TCGA-BH-A18U 
       72.56        37.74        30.28        55.63        37.55        51.39 
TCGA-BH-A1EN TCGA-BH-A1EO TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EW 
       69.93        91.99        82.85        42.28        12.00        55.69 
TCGA-BH-A1EX TCGA-BH-A1F0 TCGA-BH-A1F2 TCGA-BH-A1F5 TCGA-BH-A1F8 TCGA-BH-A1FB 
       49.58        25.81        31.53        89.16        24.66       120.62 
TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL 
       33.17        74.73       122.89        36.92        63.35        55.00 
TCGA-BH-A1FM TCGA-BH-A1FN TCGA-BH-A1FR TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A203 
       45.63        72.07       144.59        28.14        26.14        38.60 
TCGA-BH-A208 TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U 
       57.83        10.65         6.44        20.12        10.52       109.28 
TCGA-BH-A42V TCGA-BH-A6R8 TCGA-BH-A6R9 TCGA-BH-A8FY TCGA-BH-A8FZ TCGA-BH-A8G0 
        8.94         9.63         5.26         9.70        18.87        21.76 
TCGA-BH-AB28 TCGA-C8-A12L TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12V TCGA-C8-A12W 
        9.44        11.93        11.77        12.66        12.66        12.66 
TCGA-C8-A12X TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A134 TCGA-C8-A135 TCGA-C8-A137 
       12.66         3.16         2.24         1.12         1.05         4.11 
TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HJ TCGA-C8-A1HK 
        4.08        12.33        11.34        11.28         0.16        12.03 
TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A26Z TCGA-C8-A273 
        2.30         3.25         0.30         0.23         8.28         9.67 
TCGA-C8-A274 TCGA-C8-A275 TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-C8-A8HR TCGA-D8-A13Z 
        9.53         0.03         0.03         0.23        13.41        20.88 
TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A145 TCGA-D8-A146 TCGA-D8-A1J8 
       20.58        13.97        14.17        13.48        21.14        14.17 
TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JF 
       17.49        16.50        18.71        18.15        18.90        12.03 
TCGA-D8-A1JH TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1JS TCGA-D8-A1JT 
       14.01        20.09        19.40        20.38        12.20        13.32 
TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1X9 
       14.70        18.58        17.79        16.73        25.74        23.90 
TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XF TCGA-D8-A1XG TCGA-D8-A1XJ TCGA-D8-A1XL 
       18.15        12.39        15.22        14.73        21.83        19.92 
TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XU TCGA-D8-A1XV 
       17.69        15.55        15.85        16.31        12.99        15.16 
TCGA-D8-A1XW TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 TCGA-D8-A27E TCGA-D8-A27G 
       12.66        15.52         9.93        14.24        17.42        13.45 
TCGA-D8-A27H TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27N 
       13.05        14.43         9.44        16.41        13.48         4.80 
TCGA-D8-A27P TCGA-D8-A27T TCGA-D8-A27V TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A3Z6 
        0.76        13.08        12.53        12.26        33.37        18.51 
TCGA-D8-A4Z1 TCGA-D8-A73U TCGA-D8-A73W TCGA-D8-A73X TCGA-E2-A105 TCGA-E2-A107 
       21.67        16.18         8.02        12.10        43.00        34.42 
TCGA-E2-A108 TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10C TCGA-E2-A10E TCGA-E2-A10F 
       27.52        40.41        37.51        40.11        28.44        28.87 
TCGA-E2-A14N TCGA-E2-A14Q TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V 
       47.15        38.24        33.17        33.30        43.33        34.26 
TCGA-E2-A14W TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A152 
       32.02        31.96        28.60        18.51        25.41        27.12 
TCGA-E2-A153 TCGA-E2-A154 TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A158 TCGA-E2-A15A 
       23.24        19.43        21.04        23.87        14.79        23.34 
TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15I 
       22.82        17.29        20.71        21.63        18.21        17.42 
TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15O TCGA-E2-A15P 
       19.40         9.04        20.58        11.05        13.02        19.56 
TCGA-E2-A15R TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 
       17.06        14.99        60.53        53.62        53.03        33.01 
TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BC TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF 
       32.35        28.50        16.47        17.10        38.30        37.41 
TCGA-E2-A1IG TCGA-E2-A1IH TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL 
       32.78        33.73        33.70        28.44        22.65         3.88 
TCGA-E2-A1IN TCGA-E2-A1IO TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L8 TCGA-E2-A1L9 
       22.19        20.98        11.08        54.18        39.62        19.66 
TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LG TCGA-E2-A1LH TCGA-E2-A1LI 
       24.59        40.47        28.90        18.87       106.75       102.61 
TCGA-E2-A1LK TCGA-E2-A2P5 TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 
        8.75        16.93         5.52        15.72         8.28        30.61 
TCGA-E2-A574 TCGA-E2-A576 TCGA-E2-A9RU TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 
       26.56        34.29        12.85        34.82        32.88        36.82 
TCGA-E9-A1N8 TCGA-E9-A1N9 TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NG 
       12.00        13.12        39.55        12.59        35.77        25.84 
TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1RA 
       28.27        34.95         6.12         3.02         2.76        32.09 
TCGA-E9-A1RC TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RI TCGA-E9-A227 
       40.24         1.12        34.65         6.58        35.64        32.05 
TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22B TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A22H 
       12.53        13.32        22.75        41.03        12.89        20.71 
TCGA-E9-A247 TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A295 TCGA-E9-A2JS 
       27.22         1.94         7.13        24.56         0.72        29.72 
TCGA-E9-A2JT TCGA-E9-A3Q9 TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A54Y TCGA-E9-A5FK 
        0.76        18.41        15.72        12.33        23.84        14.70 
TCGA-E9-A5FL TCGA-E9-A5UP TCGA-E9-A6HE TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY 
        0.79        14.40        15.39        12.20        39.72         8.48 
TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J5 TCGA-EW-A1J6 
       18.21        18.90        13.25        16.57        15.68        28.77 
TCGA-EW-A1OV TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P3 TCGA-EW-A1P4 TCGA-EW-A1P5 
       25.94        41.13        39.78        52.96        29.82        23.11 
TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1P8 TCGA-EW-A1PB TCGA-EW-A1PD TCGA-EW-A1PE 
       18.48        30.08         7.86        19.99        13.94        10.52 
TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FV TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A423 
       34.55        19.96        25.91        22.09        34.03        10.16 
TCGA-EW-A424 TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DC 
       23.51         7.40       109.87        59.57       216.76        83.34 
TCGA-GM-A2DD TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN 
       75.02        85.15        86.96       115.69       106.06       101.62 
TCGA-GM-A2DO TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XL TCGA-GM-A3XN 
       85.35       110.50        38.20        43.73        69.30        66.38 
TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2OB TCGA-JL-A3YW TCGA-JL-A3YX 
       72.03        13.55        18.12        62.43        11.84        11.57 
TCGA-LD-A66U TCGA-LD-A74U TCGA-LD-A7W5 TCGA-LD-A7W6 TCGA-LD-A9QF TCGA-LL-A440 
       21.24        13.22         7.10        13.28        10.62        24.95 
TCGA-LL-A441 TCGA-LL-A442 TCGA-LL-A50Y TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A5YO 
       11.44        10.95        25.05        15.32        14.70        14.47 
TCGA-LL-A5YP TCGA-LL-A6FP TCGA-LL-A6FQ TCGA-LL-A73Y TCGA-LL-A73Z TCGA-LL-A740 
       14.79        22.26         2.63        15.68         7.46        14.50 
TCGA-LL-A7SZ TCGA-LL-A8F5 TCGA-LL-A9Q3 TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 
       14.70        14.73        14.07        27.91        22.39         2.10 
TCGA-OL-A5D6 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RU TCGA-OL-A5RV TCGA-OL-A5RW 
       36.30        31.99        58.62        40.08        34.92        36.36 
TCGA-OL-A5RX TCGA-OL-A5RZ TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66K 
       28.87        22.32        26.70        23.47        65.62        41.92 
TCGA-OL-A66L TCGA-OL-A66N TCGA-OL-A66O TCGA-OL-A66P TCGA-OL-A6VQ TCGA-OL-A6VR 
       42.77        26.04        17.36        14.07        19.73        40.11 
TCGA-OL-A97C TCGA-PE-A5DD TCGA-PE-A5DE TCGA-PL-A8LY TCGA-PL-A8LZ TCGA-S3-A6ZG 
        8.91        64.21        86.96         0.26         9.93        13.12 
TCGA-S3-A6ZH TCGA-S3-AA0Z TCGA-S3-AA10 TCGA-S3-AA11 TCGA-S3-AA12 TCGA-S3-AA15 
       16.93        16.80        15.39        13.84        15.35        13.84 
TCGA-S3-AA17 TCGA-W8-A86G TCGA-XX-A899 TCGA-XX-A89A TCGA-Z7-A8R5 TCGA-Z7-A8R6 
       13.94        11.41        15.35        16.04       108.07       107.05 

  DEL PEAK 37(19Q13.32) MUTATED DEL PEAK 37(19Q13.32) WILD-TYPE 
                           0.16                            0.03 
  DEL PEAK 37(19Q13.32) MUTATED DEL PEAK 37(19Q13.32) WILD-TYPE 
                         186.48                          234.28 
  DEL PEAK 37(19Q13.32) MUTATED DEL PEAK 37(19Q13.32) WILD-TYPE 
                          24.13                           24.56 
[1] "0.2 - 186.5 (24.1)" "0.0 - 234.3 (24.6)"
[1] "hr=" "1.2"
D66V2, continuous
                                 vv
clus                              STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  DEL PEAK 37(19Q13.32) MUTATED        15       15        0        0        75
  DEL PEAK 37(19Q13.32) WILD-TYPE      74       66        8        3       278
                                 vv
clus                              STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  DEL PEAK 37(19Q13.32) MUTATED          46         1         38          3
  DEL PEAK 37(19Q13.32) WILD-TYPE       199         1        112         26
                                 vv
clus                              STAGE IIIC STAGE IV STAGE TIS STAGE X
  DEL PEAK 37(19Q13.32) MUTATED           10        6         0       1
  DEL PEAK 37(19Q13.32) WILD-TYPE         53       14         1      12
D66V3, multiclass
            clus
vv           DEL PEAK 37(19Q13.32) MUTATED DEL PEAK 37(19Q13.32) WILD-TYPE
  STAGE I                               15                              74
  STAGE IA                              15                              66
  STAGE IB                               0                               8
  STAGE II                               0                               3
  STAGE IIA                             75                             278
  STAGE IIB                             46                             199
  STAGE III                              1                               1
  STAGE IIIA                            38                             112
  STAGE IIIB                             3                              26
  STAGE IIIC                            10                              53
  STAGE IV                               6                              14
  STAGE TIS                              0                               1
  STAGE X                                1                              12
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                               T1  T2  T3  T4
  DEL PEAK 37(19Q13.32) MUTATED    49 135  22   6
  DEL PEAK 37(19Q13.32) WILD-TYPE 223 481 108  34
D66V4, multiclass
    clus
vv   DEL PEAK 37(19Q13.32) MUTATED DEL PEAK 37(19Q13.32) WILD-TYPE
  T1                            49                             223
  T2                           135                             481
  T3                            22                             108
  T4                             6                              34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                               N0  N1  N2  N3
  DEL PEAK 37(19Q13.32) MUTATED    97  68  34  12
  DEL PEAK 37(19Q13.32) WILD-TYPE 404 282  83  63
D66V5, multiclass
    clus
vv   DEL PEAK 37(19Q13.32) MUTATED DEL PEAK 37(19Q13.32) WILD-TYPE
  N0                            97                             404
  N1                            68                             282
  N2                            34                              83
  N3                            12                              63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D66V6, binary
                                 cls
clus                                0   1
  DEL PEAK 37(19Q13.32) MUTATED   170   6
  DEL PEAK 37(19Q13.32) WILD-TYPE 709  15
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 37(19Q13.32) MUTATED    170    6
  DEL PEAK 37(19Q13.32) WILD-TYPE  709   15
   clus
vv  DEL PEAK 37(19Q13.32) MUTATED DEL PEAK 37(19Q13.32) WILD-TYPE
  0                           170                             709
  1                             6                              15
[1] 2 2
[1] FALSE
D66V7, binary
                                 cls
clus                                0   1
  DEL PEAK 37(19Q13.32) MUTATED   210   2
  DEL PEAK 37(19Q13.32) WILD-TYPE 841   9
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 37(19Q13.32) MUTATED    210    2
  DEL PEAK 37(19Q13.32) WILD-TYPE  841    9
        clus
vv       DEL PEAK 37(19Q13.32) MUTATED DEL PEAK 37(19Q13.32) WILD-TYPE
  FEMALE                           210                             841
  MALE                               2                               9
[1] 2 2
[1] FALSE
                                 vv
clus                              INFILTRATING CARCINOMA NOS
  DEL PEAK 37(19Q13.32) MUTATED                            0
  DEL PEAK 37(19Q13.32) WILD-TYPE                          1
                                 vv
clus                              INFILTRATING DUCTAL CARCINOMA
  DEL PEAK 37(19Q13.32) MUTATED                             181
  DEL PEAK 37(19Q13.32) WILD-TYPE                           582
                                 vv
clus                              INFILTRATING LOBULAR CARCINOMA
  DEL PEAK 37(19Q13.32) MUTATED                                9
  DEL PEAK 37(19Q13.32) WILD-TYPE                            183
                                 vv
clus                              MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  DEL PEAK 37(19Q13.32) MUTATED                     3                     1
  DEL PEAK 37(19Q13.32) WILD-TYPE                   3                     3
                                 vv
clus                              MIXED HISTOLOGY (PLEASE SPECIFY)
  DEL PEAK 37(19Q13.32) MUTATED                                  6
  DEL PEAK 37(19Q13.32) WILD-TYPE                               24
                                 vv
clus                              MUCINOUS CARCINOMA OTHER  SPECIFY
  DEL PEAK 37(19Q13.32) MUTATED                    4              7
  DEL PEAK 37(19Q13.32) WILD-TYPE                 13             41
D66V8, multiclass
                                  clus
vv                                 DEL PEAK 37(19Q13.32) MUTATED
  INFILTRATING CARCINOMA NOS                                   0
  INFILTRATING DUCTAL CARCINOMA                              181
  INFILTRATING LOBULAR CARCINOMA                               9
  MEDULLARY CARCINOMA                                          3
  METAPLASTIC CARCINOMA                                        1
  MIXED HISTOLOGY (PLEASE SPECIFY)                             6
  MUCINOUS CARCINOMA                                           4
  OTHER  SPECIFY                                               7
                                  clus
vv                                 DEL PEAK 37(19Q13.32) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                     1
  INFILTRATING DUCTAL CARCINOMA                                582
  INFILTRATING LOBULAR CARCINOMA                               183
  MEDULLARY CARCINOMA                                            3
  METAPLASTIC CARCINOMA                                          3
  MIXED HISTOLOGY (PLEASE SPECIFY)                              24
  MUCINOUS CARCINOMA                                            13
  OTHER  SPECIFY                                                41
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D66V9, binary
                                 cls
clus                                0   1
  DEL PEAK 37(19Q13.32) MUTATED    72 140
  DEL PEAK 37(19Q13.32) WILD-TYPE 216 634
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 37(19Q13.32) MUTATED     72  140
  DEL PEAK 37(19Q13.32) WILD-TYPE  216  634
     clus
vv    DEL PEAK 37(19Q13.32) MUTATED DEL PEAK 37(19Q13.32) WILD-TYPE
  NO                             72                             216
  YES                           140                             634
[1] 2 2
[1] FALSE
D66V10, continuous
                                 vv
clus                              AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 37(19Q13.32) MUTATED                                  0    17
  DEL PEAK 37(19Q13.32) WILD-TYPE                                1    43
                                 vv
clus                              BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 37(19Q13.32) MUTATED                          40   138
  DEL PEAK 37(19Q13.32) WILD-TYPE                       130   598
D66V11, multiclass
                                  clus
vv                                 DEL PEAK 37(19Q13.32) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                             0
  ASIAN                                                       17
  BLACK OR AFRICAN AMERICAN                                   40
  WHITE                                                      138
                                  clus
vv                                 DEL PEAK 37(19Q13.32) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                               1
  ASIAN                                                         43
  BLACK OR AFRICAN AMERICAN                                    130
  WHITE                                                        598
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D66V12, binary
                                 cls
clus                                0   1
  DEL PEAK 37(19Q13.32) MUTATED     6 177
  DEL PEAK 37(19Q13.32) WILD-TYPE  32 681
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 37(19Q13.32) MUTATED      6  177
  DEL PEAK 37(19Q13.32) WILD-TYPE   32  681
                        clus
vv                       DEL PEAK 37(19Q13.32) MUTATED
  HISPANIC OR LATINO                                 6
  NOT HISPANIC OR LATINO                           177
                        clus
vv                       DEL PEAK 37(19Q13.32) WILD-TYPE
  HISPANIC OR LATINO                                  32
  NOT HISPANIC OR LATINO                             681
[1] 2 2
[1] FALSE

Clustering(67) Variable = DEL PEAK 38(20P13) MUTATION ANALYSIS
D67V1, survival
                              sevent
clus2                            0   1
  DEL PEAK 38(20P13) MUTATED   134  23
  DEL PEAK 38(20P13) WILD-TYPE 782 105
  DEL PEAK 38(20P13) MUTATED DEL PEAK 38(20P13) WILD-TYPE 
                         157                          887 
  DEL PEAK 38(20P13) MUTATED DEL PEAK 38(20P13) WILD-TYPE 
                          23                          105 
$`DEL PEAK 38(20P13) MUTATED`
TCGA-5T-A9QA TCGA-A1-A0SK TCGA-A1-A0SO TCGA-A2-A04T TCGA-A2-A0CM TCGA-A2-A0D0 
        9.96        31.79        28.01        73.84        24.79        67.33 
TCGA-A2-A0ST TCGA-A2-A0T3 TCGA-A2-A0YE TCGA-A2-A0YH TCGA-A2-A3XU TCGA-A2-A4S3 
       99.19        49.84        18.21        21.67        29.98        21.90 
TCGA-A7-A0CE TCGA-A7-A13F TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26I TCGA-A7-A4SE 
       35.31        25.15        31.36        24.26        21.73        21.17 
TCGA-A7-A5ZV TCGA-A8-A06Q TCGA-A8-A06R TCGA-A8-A06X TCGA-A8-A079 TCGA-A8-A07L 
       12.10         1.02        17.98        31.00         9.01        32.05 
TCGA-A8-A07P TCGA-A8-A082 TCGA-A8-A08F TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08O 
       10.98        18.05        33.01        37.05         9.99        31.00 
TCGA-A8-A09Q TCGA-A8-A09W TCGA-A8-A0A2 TCGA-A8-A0AB TCGA-AC-A3W5 TCGA-AC-A62V 
       25.02         0.99        19.04        17.03        16.57        11.44 
TCGA-AC-A62X TCGA-AC-A7VB TCGA-AC-A8OP TCGA-AN-A0AT TCGA-AN-A0FY TCGA-AN-A0XW 
       13.71         8.22        20.19         0.33         0.33         5.59 
TCGA-AO-A03R TCGA-AO-A0J2 TCGA-AO-A0J6 TCGA-AO-A1KQ TCGA-AO-A1KT TCGA-AQ-A04H 
       68.75        32.78        37.48        61.87        17.79        24.79 
TCGA-AQ-A04J TCGA-AQ-A54N TCGA-AR-A0TS TCGA-AR-A0TW TCGA-AR-A0TY TCGA-AR-A0U1 
       26.93         2.56        74.79        98.93        55.86       101.95 
TCGA-AR-A0U3 TCGA-AR-A1AR TCGA-AR-A1AU TCGA-AR-A1AY TCGA-AR-A24K TCGA-AR-A251 
      114.02        17.23        76.21        33.73        50.89        78.48 
TCGA-AR-A252 TCGA-B6-A0I9 TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0RL TCGA-B6-A0RS 
       73.18        12.13       176.98        18.77        81.17       100.70 
TCGA-B6-A0WT TCGA-B6-A0WX TCGA-B6-A0X1 TCGA-B6-A1KN TCGA-BH-A0AV TCGA-BH-A0B4 
      188.68        21.47       186.48       139.17        59.84        39.16 
TCGA-BH-A0B7 TCGA-BH-A0B9 TCGA-BH-A0BG TCGA-BH-A0BP TCGA-BH-A0BR TCGA-BH-A0BZ 
       56.98        51.68        24.85        48.69        53.69        49.05 
TCGA-BH-A0C0 TCGA-BH-A0C7 TCGA-BH-A0DH TCGA-BH-A0E1 TCGA-BH-A0EE TCGA-BH-A0HB 
       41.75        42.90        38.01        15.68        31.00        26.50 
TCGA-BH-A18R TCGA-BH-A18T TCGA-BH-A18V TCGA-BH-A1FC TCGA-BH-A1FD TCGA-BH-A1FM 
       37.55         7.36        51.16       114.15        33.17        45.63 
TCGA-BH-A1FN TCGA-BH-A203 TCGA-C8-A12L TCGA-C8-A12M TCGA-C8-A130 TCGA-C8-A134 
       72.07        38.60        11.93        11.77         3.16         1.12 
TCGA-C8-A135 TCGA-C8-A1HJ TCGA-C8-A1HN TCGA-C8-A26Z TCGA-C8-A8HQ TCGA-D8-A1J9 
        1.05         0.16         3.25         8.28        12.49        17.49 
TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XD TCGA-D8-A1XJ 
       20.12        20.09        23.90        27.58        17.16        21.83 
TCGA-D8-A1XK TCGA-D8-A1XQ TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A1Y3 TCGA-D8-A27F 
       14.50        16.41        15.32        15.52        14.14        16.04 
TCGA-D8-A27H TCGA-D8-A27R TCGA-E2-A14R TCGA-E2-A150 TCGA-E2-A15A TCGA-E2-A15E 
       13.05        10.09        38.60        25.41        23.34        20.71 
TCGA-E2-A15F TCGA-E2-A15S TCGA-E2-A1L7 TCGA-E2-A1LH TCGA-E2-A2P5 TCGA-E2-A573 
       21.63        14.07        27.42       106.75        16.93        34.92 
TCGA-E9-A1N5 TCGA-E9-A1N9 TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RE TCGA-E9-A1RH 
       36.82        13.12         2.76        21.21        34.65        34.59 
TCGA-E9-A22D TCGA-E9-A22G TCGA-E9-A244 TCGA-E9-A3HO TCGA-EW-A1OZ TCGA-EW-A1P4 
       41.03        23.51         0.69        26.07        40.41        29.82 
TCGA-EW-A1P8 TCGA-EW-A2FR TCGA-EW-A2FV TCGA-GI-A2C9 TCGA-GM-A2DF TCGA-GM-A2DH 
        7.86        55.00        25.91       109.87        70.85        72.10 
TCGA-GM-A3XL TCGA-HN-A2NL TCGA-JL-A3YX TCGA-LL-A5YP TCGA-LL-A8F5 TCGA-MS-A51U 
       69.30         2.60        11.57        14.79        14.73        22.39 
TCGA-OL-A5RW TCGA-OL-A5S0 TCGA-OL-A66O TCGA-OL-A6VO TCGA-PL-A8LX TCGA-S3-AA0Z 
       36.36        20.38        17.36        28.21         0.16        16.80 
TCGA-WT-AB44 
       29.03 

$`DEL PEAK 38(20P13) WILD-TYPE`
TCGA-3C-AAAU TCGA-3C-AALI TCGA-3C-AALJ TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT0 
      129.14       131.67        42.81        40.14        11.44        48.56 
TCGA-5L-AAT1 TCGA-A1-A0SB TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG 
       48.36         8.52        14.37        43.43        48.10        14.27 
TCGA-A1-A0SH TCGA-A1-A0SI TCGA-A1-A0SJ TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SP 
       47.24        20.88        13.68         7.96        39.32        19.20 
TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04P TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04U 
       18.21       104.81        18.02        78.41       121.94        87.25 
TCGA-A2-A04V TCGA-A2-A04W TCGA-A2-A04X TCGA-A2-A04Y TCGA-A2-A0CK TCGA-A2-A0CL 
       63.12       101.98        55.43        36.13       136.73        99.12 
TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CQ TCGA-A2-A0CR TCGA-A2-A0CS TCGA-A2-A0CT 
      114.81        92.48        88.60       107.93        75.55        75.25 
TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0CX TCGA-A2-A0D1 TCGA-A2-A0D2 
        5.19        98.99       107.93        56.81        34.55        33.76 
TCGA-A2-A0D3 TCGA-A2-A0D4 TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP 
       61.58        25.22       101.72       134.40        80.28       107.61 
TCGA-A2-A0EQ TCGA-A2-A0ER TCGA-A2-A0ES TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EV 
       79.76        74.40        72.00        35.05        34.29        31.82 
TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0EY TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW 
       61.94        24.72        63.29        54.64        27.12        44.88 
TCGA-A2-A0SX TCGA-A2-A0SY TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T4 
       50.43        44.28        17.52        17.13         8.38        20.52 
TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YF 
       17.46        18.90        20.75        32.55        25.28        50.47 
TCGA-A2-A0YG TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A0YM 
       21.90        49.48        18.61        19.33        48.46        31.73 
TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1FX TCGA-A2-A1FZ TCGA-A2-A1G0 
       23.77        23.47        17.36        60.72        22.45        20.25 
TCGA-A2-A1G1 TCGA-A2-A1G4 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25A TCGA-A2-A25B 
       19.20        19.56        16.47        52.47       107.70        42.44 
TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD 
       17.19        18.15       105.34        10.59        20.88        39.65 
TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX TCGA-A2-A3XY 
       33.93        83.01        32.75        49.48        47.31        34.98 
TCGA-A2-A3XZ TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 
       50.37        38.37         7.30        24.39        21.30        23.21 
TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A7-A0CD TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0CJ 
       26.96        21.14        38.30        34.29        35.47        30.61 
TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A0DC TCGA-A7-A13D TCGA-A7-A13E 
       37.45        35.67        33.11        29.79        31.73        20.19 
TCGA-A7-A13G TCGA-A7-A13H TCGA-A7-A26G TCGA-A7-A26H TCGA-A7-A26J TCGA-A7-A2KD 
       23.61        29.56        23.74        23.80        20.61        22.32 
TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3J1 TCGA-A7-A3RF TCGA-A7-A425 
       11.34        10.59        10.29        11.28        13.41        14.70 
TCGA-A7-A426 TCGA-A7-A4SA TCGA-A7-A4SB TCGA-A7-A4SD TCGA-A7-A4SF TCGA-A7-A56D 
       11.97        14.93        13.74        14.50        17.92        14.73 
TCGA-A7-A5ZW TCGA-A7-A5ZX TCGA-A7-A6VV TCGA-A7-A6VW TCGA-A7-A6VX TCGA-A7-A6VY 
       10.72        11.05        10.29         9.37        10.42         8.75 
TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06T TCGA-A8-A06U TCGA-A8-A06Y TCGA-A8-A06Z 
       13.02        13.02        53.06        29.03        26.01         1.02 
TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A07B TCGA-A8-A07E TCGA-A8-A07F TCGA-A8-A07G 
       17.03        53.98        43.00        19.99        18.97        18.97 
TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07O TCGA-A8-A07R TCGA-A8-A07S TCGA-A8-A07U 
       14.01        12.00         9.99         8.98         7.99        24.99 
TCGA-A8-A07W TCGA-A8-A07Z TCGA-A8-A084 TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A 
        9.99        45.07        15.06        36.95        13.02         0.99 
TCGA-A8-A08B TCGA-A8-A08C TCGA-A8-A08G TCGA-A8-A08I TCGA-A8-A08P TCGA-A8-A08R 
       38.01        28.96        19.96        12.00        31.00         0.99 
TCGA-A8-A08S TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A08Z TCGA-A8-A091 TCGA-A8-A092 
       33.01       112.08        43.00        40.01        33.01        30.97 
TCGA-A8-A093 TCGA-A8-A095 TCGA-A8-A097 TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09B 
       17.95        41.98        12.00         9.99         9.99        12.00 
TCGA-A8-A09C TCGA-A8-A09D TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K TCGA-A8-A09M 
        1.02        50.04        49.05        45.07        29.98        33.07 
TCGA-A8-A09N TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09X TCGA-A8-A0A1 
        1.02         8.98        19.04        15.02        14.01        12.00 
TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A7 TCGA-A8-A0A9 TCGA-A8-A0AD TCGA-AC-A23C 
       13.02        21.04         0.99        27.02        38.04         0.95 
TCGA-AC-A23E TCGA-AC-A23G TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM 
        2.37        10.85         5.72         1.48        38.53        99.35 
TCGA-AC-A2FB TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2FO 
       40.57        55.43        36.99        38.79        26.04        50.70 
TCGA-AC-A2QH TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3HN TCGA-AC-A3OD 
       33.04         0.92         2.27        32.45        16.31        14.83 
TCGA-AC-A3QP TCGA-AC-A3TN TCGA-AC-A3W6 TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A5XS 
       22.19        14.99        19.79        23.24        24.79         1.55 
TCGA-AC-A62Y TCGA-AC-A6IV TCGA-AC-A6IW TCGA-AC-A6IX TCGA-AC-A6NO TCGA-AC-A7VC 
       17.42        18.67        13.58        12.26         1.68         0.03 
TCGA-AC-A8OQ TCGA-AC-A8OR TCGA-AC-A8OS TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A041 
        1.12         1.32         2.30         0.33         0.33         0.23 
TCGA-AN-A046 TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A04D TCGA-AN-A0AJ 
        0.33         0.62         2.96         1.78         1.71         9.96 
TCGA-AN-A0AK TCGA-AN-A0AL TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0FD 
        7.36         6.51         0.16         0.33         0.33         6.44 
TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FN TCGA-AN-A0FS 
        5.65         7.96         7.00         7.59         7.17         6.28 
TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FX TCGA-AN-A0FZ TCGA-AN-A0XL 
        7.04         0.33         0.36         0.33         0.33         0.33 
TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS TCGA-AN-A0XT 
        0.33        12.33         0.30         0.33         0.33         0.33 
TCGA-AN-A0XU TCGA-AN-A0XV TCGA-AO-A03L TCGA-AO-A03M TCGA-AO-A03N TCGA-AO-A03O 
        0.33         5.33        80.28        61.35        66.77        81.63 
TCGA-AO-A03P TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J3 TCGA-AO-A0J4 
       95.70        47.87        58.95        29.13        21.40        52.18 
TCGA-AO-A0J5 TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JB 
       26.04        20.32        22.36        53.03        21.53        50.70 
TCGA-AO-A0JC TCGA-AO-A0JD TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JG TCGA-AO-A0JI 
       50.86        72.00        76.77        21.37        26.24        50.24 
TCGA-AO-A0JJ TCGA-AO-A0JL TCGA-AO-A0JM TCGA-AO-A124 TCGA-AO-A125 TCGA-AO-A126 
       62.04        55.33        71.80       102.58        99.25       108.72 
TCGA-AO-A128 TCGA-AO-A129 TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A12E 
      106.78       108.03        90.58        98.27        64.04        57.30 
TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KR 
       48.36        41.62        28.37        14.73        82.62        70.39 
TCGA-AO-A1KS TCGA-AQ-A04L TCGA-AQ-A0Y5 TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AQ-A54O 
        0.53       130.09         5.65        15.62        32.52        32.91 
TCGA-AQ-A7U7 TCGA-AR-A0TP TCGA-AR-A0TQ TCGA-AR-A0TR TCGA-AR-A0TT TCGA-AR-A0TV 
       19.20       111.32        73.64         5.26        86.66        42.35 
TCGA-AR-A0TX TCGA-AR-A0TZ TCGA-AR-A0U0 TCGA-AR-A0U2 TCGA-AR-A0U4 TCGA-AR-A1AH 
       64.83       107.24        65.36        83.87        85.97        75.55 
TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AM TCGA-AR-A1AN 
       61.84        52.77        51.25        48.82        76.11        43.73 
TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AQ TCGA-AR-A1AS TCGA-AR-A1AV TCGA-AR-A1AW 
       43.56        39.98        43.07        37.81        61.28        63.62 
TCGA-AR-A1AX TCGA-AR-A24H TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O 
       62.14       160.90        94.22        96.89        78.51        84.20 
TCGA-AR-A24P TCGA-AR-A24Q TCGA-AR-A24R TCGA-AR-A24S TCGA-AR-A24T TCGA-AR-A24U 
        2.76       104.28        87.22        97.84        76.01        53.36 
TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A254 
       85.35        50.96        83.77        79.00        89.00        72.76 
TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LK 
       58.92        93.83       143.21        20.25        62.86        54.21 
TCGA-AR-A2LL TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A2LR 
       66.15        52.11        38.17        39.39        40.54        20.38 
TCGA-AR-A5QM TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I2 
       54.74        16.04        20.45        10.59        77.62       143.38 
TCGA-B6-A0I5 TCGA-B6-A0IA TCGA-B6-A0IB TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG 
      149.59       220.90       129.57        50.70        65.72       146.50 
TCGA-B6-A0IH TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IO TCGA-B6-A0IP TCGA-B6-A0IQ 
      112.37       126.12        84.59       110.14       110.93       140.88 
TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RM TCGA-B6-A0RN 
      211.56        68.45       189.01       234.28        78.02       172.96 
TCGA-B6-A0RO TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RU TCGA-B6-A0RV 
      162.05       102.77       140.48        89.46       131.21       157.41 
TCGA-B6-A0WS TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0WY TCGA-B6-A0WZ TCGA-B6-A0X0 
       97.48        79.63        18.35       113.79       129.57       129.70 
TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A1KI 
       28.27        68.94        58.88        43.59       101.52        73.51 
TCGA-B6-A2IU TCGA-B6-A401 TCGA-B6-A402 TCGA-B6-A408 TCGA-B6-A40B TCGA-B6-A40C 
      170.17        85.35        74.99        68.12       103.63        71.15 
TCGA-BH-A0AU TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B2 
       24.53        20.45        25.55        28.50        46.95        40.83 
TCGA-BH-A0B3 TCGA-BH-A0B5 TCGA-BH-A0B6 TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BD 
       39.55        48.36        56.94        37.22        32.02        18.21 
TCGA-BH-A0BF TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BQ 
       25.71        21.70        44.05        61.68        35.67        27.19 
TCGA-BH-A0BS TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0BW TCGA-BH-A0C1 TCGA-BH-A0C3 
       53.95        45.57        49.94        11.67        44.02        48.13 
TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL 
       45.83        31.17        23.44        22.13        13.91        48.23 
TCGA-BH-A0DO TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV 
       17.26        15.65         3.22         2.56        38.47        67.86 
TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E2 TCGA-BH-A0E6 TCGA-BH-A0E7 
       47.41        16.27         4.41        14.30         9.63        44.81 
TCGA-BH-A0E9 TCGA-BH-A0EA TCGA-BH-A0EB TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ 
       46.19        32.58        24.49        24.43        30.35        10.78 
TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H7 TCGA-BH-A0H9 
       15.16        37.78        35.51        24.56        23.08        41.00 
TCGA-BH-A0HA TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ 
       52.96        20.38         5.85         2.50        13.61        36.85 
TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0RX TCGA-BH-A0W3 
       12.89        51.32        27.25        50.79         5.59        23.93 
TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A0WA TCGA-BH-A18F TCGA-BH-A18G 
       24.95        42.35        44.81        23.05         8.81         2.01 
TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18M TCGA-BH-A18N 
        7.23        20.12        90.84        26.66        72.56        37.74 
TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18S TCGA-BH-A18U TCGA-BH-A1EN TCGA-BH-A1EO 
       30.28        55.63        66.05        51.39        69.93        91.99 
TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1EX 
      113.82        82.85        42.28        12.00        55.69        49.58 
TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F2 TCGA-BH-A1F5 TCGA-BH-A1F6 TCGA-BH-A1F8 
       17.69        25.81        31.53        89.16        97.48        24.66 
TCGA-BH-A1FB TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL 
      120.62        74.73       122.89        36.92        63.35        55.00 
TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A204 TCGA-BH-A208 
      144.59        72.07        28.14        26.14        83.31        57.83 
TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U 
      130.16        10.65         6.44        20.12        10.52       109.28 
TCGA-BH-A42V TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-BH-A6R8 TCGA-BH-A6R9 TCGA-BH-A8FY 
        8.94        18.64        23.51         9.63         5.26         9.70 
TCGA-BH-A8FZ TCGA-BH-A8G0 TCGA-BH-AB28 TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12P 
       18.87        21.76         9.44        11.77        12.66        11.77 
TCGA-C8-A12Q TCGA-C8-A12U TCGA-C8-A12V TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A12Z 
       12.66        12.66        12.66        12.66        12.66         0.39 
TCGA-C8-A131 TCGA-C8-A132 TCGA-C8-A137 TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HF 
        2.24         1.87         4.11         4.08        12.33        10.92 
TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HK TCGA-C8-A1HL TCGA-C8-A1HM TCGA-C8-A26V 
       11.34        11.28        12.03        10.42         2.30         0.30 
TCGA-C8-A26W TCGA-C8-A26X TCGA-C8-A26Y TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A275 
        0.23         0.36         0.43         9.67         9.53         0.03 
TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-C8-A8HP 
        9.50        12.20         0.99         0.03         0.23        13.02 
TCGA-C8-A8HR TCGA-C8-A9FZ TCGA-D8-A13Y TCGA-D8-A13Z TCGA-D8-A140 TCGA-D8-A141 
       13.41        19.46        11.90        20.88        13.25        20.58 
TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A145 TCGA-D8-A146 TCGA-D8-A147 TCGA-D8-A1J8 
       13.97        14.17        13.48        21.14        19.20        14.17 
TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JF 
       16.50        18.71        15.78        18.15        18.90        12.03 
TCGA-D8-A1JG TCGA-D8-A1JH TCGA-D8-A1JI TCGA-D8-A1JJ TCGA-D8-A1JM TCGA-D8-A1JN 
       12.03        14.01        18.97        20.09        19.40        20.38 
TCGA-D8-A1JP TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X6 
       21.01        12.20        13.32        14.70        18.58        17.79 
TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XF TCGA-D8-A1XG 
       16.73        25.74        18.15        12.39        15.22        14.73 
TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XT 
       19.92        17.69        15.55        15.85        16.31         6.35 
TCGA-D8-A1XU TCGA-D8-A1XV TCGA-D8-A1XW TCGA-D8-A1XY TCGA-D8-A1Y1 TCGA-D8-A1Y2 
       12.99        15.16        12.66        16.54         9.93        14.24 
TCGA-D8-A27E TCGA-D8-A27G TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27M 
       17.42        13.45        14.43         9.44        16.41        13.48 
TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27T TCGA-D8-A27V TCGA-D8-A27W TCGA-D8-A3Z5 
        4.80         0.76        13.08        12.53        12.26        33.37 
TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-D8-A73U TCGA-D8-A73W TCGA-D8-A73X TCGA-E2-A105 
       18.51        21.67        16.18         8.02        12.10        43.00 
TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10C 
       34.42        27.52        46.59        40.41        37.51        40.11 
TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14Q 
       28.44        28.87        47.15        44.68        40.96        38.24 
TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14W TCGA-E2-A14X 
       33.17        33.30        43.33        34.26        32.02        31.96 
TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A152 TCGA-E2-A153 TCGA-E2-A154 TCGA-E2-A155 
       28.60        18.51        27.12        23.24        19.43        21.04 
TCGA-E2-A156 TCGA-E2-A158 TCGA-E2-A159 TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15G 
       23.87        14.79        25.05        22.82        17.29        18.21 
TCGA-E2-A15H TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M 
       12.92        17.42        19.40         9.04        20.58        11.05 
TCGA-E2-A15O TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B0 
       13.02        19.56        17.06        14.99        60.53        53.62 
TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BC TCGA-E2-A1BD 
       53.03        33.01        32.35        28.50        16.47        17.10 
TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1IH TCGA-E2-A1II TCGA-E2-A1IJ 
       38.30        37.41        32.78        33.73        33.70        28.44 
TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IO TCGA-E2-A1IU TCGA-E2-A1L6 
       22.65         3.88        22.19        20.98        11.08        54.18 
TCGA-E2-A1L8 TCGA-E2-A1L9 TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LG 
       39.62        19.66        24.59        40.47        28.90        18.87 
TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A1LL TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z 
      102.61         8.75        43.04         5.52        15.72         8.28 
TCGA-E2-A570 TCGA-E2-A574 TCGA-E2-A576 TCGA-E2-A9RU TCGA-E9-A1N3 TCGA-E9-A1N4 
       30.61        26.56        34.29        12.85        34.82        32.88 
TCGA-E9-A1N6 TCGA-E9-A1N8 TCGA-E9-A1NA TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NE 
       13.48        12.00        36.56        39.55        12.59        35.77 
TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 
       35.24        25.84         9.86        11.90        28.27        34.95 
TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RC 
        2.56         6.12         3.02        32.09        32.09        40.24 
TCGA-E9-A1RD TCGA-E9-A1RF TCGA-E9-A1RG TCGA-E9-A1RI TCGA-E9-A226 TCGA-E9-A227 
        1.12         6.58        21.27        35.64        34.13        32.05 
TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A22E TCGA-E9-A22H 
       12.53        13.32        39.09        22.75        12.89        20.71 
TCGA-E9-A243 TCGA-E9-A247 TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A295 
       17.06        27.22         1.94         7.13        24.56         0.72 
TCGA-E9-A2JS TCGA-E9-A2JT TCGA-E9-A3Q9 TCGA-E9-A3QA TCGA-E9-A3X8 TCGA-E9-A54X 
       29.72         0.76        18.41        30.18        15.72        12.33 
TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UO TCGA-E9-A5UP TCGA-E9-A6HE 
       23.84        14.70         0.79        13.81        14.40        15.39 
TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 
       12.20        39.72         8.48        18.21        18.90        13.25 
TCGA-EW-A1J3 TCGA-EW-A1J5 TCGA-EW-A1J6 TCGA-EW-A1OV TCGA-EW-A1OW TCGA-EW-A1OX 
       16.57        15.68        28.77        25.94        22.82        29.95 
TCGA-EW-A1OY TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P3 TCGA-EW-A1P5 TCGA-EW-A1P6 
       29.85        41.13        39.78        52.96        23.11        18.48 
TCGA-EW-A1P7 TCGA-EW-A1PA TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A1PE 
       30.08        18.90        19.99         6.15        13.94        10.52 
TCGA-EW-A1PF TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FS TCGA-EW-A2FW TCGA-EW-A3E8 
       14.43        34.55        19.96        52.73        22.09        34.03 
TCGA-EW-A3U0 TCGA-EW-A423 TCGA-EW-A424 TCGA-GI-A2C8 TCGA-GM-A2D9 TCGA-GM-A2DA 
       17.49        10.16        23.51         7.40        59.57       216.76 
TCGA-GM-A2DB TCGA-GM-A2DC TCGA-GM-A2DD TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL 
       79.10        83.34        75.02        85.15        86.96       115.69 
TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A2DO TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG 
      106.06       101.62        85.35       110.50        38.20        43.73 
TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2OB TCGA-JL-A3YW 
       66.38        72.03        13.55        18.12        62.43        11.84 
TCGA-LD-A66U TCGA-LD-A74U TCGA-LD-A7W5 TCGA-LD-A7W6 TCGA-LD-A9QF TCGA-LL-A440 
       21.24        13.22         7.10        13.28        10.62        24.95 
TCGA-LL-A441 TCGA-LL-A442 TCGA-LL-A50Y TCGA-LL-A5YL TCGA-LL-A5YM TCGA-LL-A5YN 
       11.44        10.95        25.05        17.06        15.32        14.70 
TCGA-LL-A5YO TCGA-LL-A6FP TCGA-LL-A6FQ TCGA-LL-A6FR TCGA-LL-A73Y TCGA-LL-A73Z 
       14.47        22.26         2.63        16.08        15.68         7.46 
TCGA-LL-A740 TCGA-LL-A7SZ TCGA-LL-A7T0 TCGA-LL-A9Q3 TCGA-LQ-A4E4 TCGA-OK-A5Q2 
       14.50        14.70        12.36        14.07        27.91         2.10 
TCGA-OL-A5D6 TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RU TCGA-OL-A5RV 
       36.30        58.52        31.99        58.62        40.08        34.92 
TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J 
       28.87        24.72        22.32        26.70        23.47        65.62 
TCGA-OL-A66K TCGA-OL-A66L TCGA-OL-A66N TCGA-OL-A66P TCGA-OL-A6VQ TCGA-OL-A6VR 
       41.92        42.77        26.04        14.07        19.73        40.11 
TCGA-OL-A97C TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE TCGA-PL-A8LY TCGA-PL-A8LZ 
        8.91        47.01        64.21        86.96         0.26         9.93 
TCGA-S3-A6ZF TCGA-S3-A6ZG TCGA-S3-A6ZH TCGA-S3-AA10 TCGA-S3-AA11 TCGA-S3-AA12 
       16.50        13.12        16.93        15.39        13.84        15.35 
TCGA-S3-AA14 TCGA-S3-AA15 TCGA-S3-AA17 TCGA-UL-AAZ6 TCGA-UU-A93S TCGA-W8-A86G 
       14.96        13.84        13.94        17.03         3.81        11.41 
TCGA-WT-AB41 TCGA-XX-A899 TCGA-XX-A89A TCGA-Z7-A8R5 TCGA-Z7-A8R6 
       52.96        15.35        16.04       108.07       107.05 

  DEL PEAK 38(20P13) MUTATED DEL PEAK 38(20P13) WILD-TYPE 
                        0.16                         0.03 
  DEL PEAK 38(20P13) MUTATED DEL PEAK 38(20P13) WILD-TYPE 
                      188.68                       234.28 
  DEL PEAK 38(20P13) MUTATED DEL PEAK 38(20P13) WILD-TYPE 
                       24.85                        24.43 
[1] "0.2 - 188.7 (24.9)" "0.0 - 234.3 (24.4)"
[1] "hr=" "1.4"
D67V2, continuous
                              vv
clus                           STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  DEL PEAK 38(20P13) MUTATED        10       11        2        0        60
  DEL PEAK 38(20P13) WILD-TYPE      79       70        6        3       293
                              vv
clus                           STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  DEL PEAK 38(20P13) MUTATED          33         0         24          6
  DEL PEAK 38(20P13) WILD-TYPE       212         2        126         23
                              vv
clus                           STAGE IIIC STAGE IV STAGE TIS STAGE X
  DEL PEAK 38(20P13) MUTATED            7        6         0       0
  DEL PEAK 38(20P13) WILD-TYPE         56       14         1      13
D67V3, multiclass
            clus
vv           DEL PEAK 38(20P13) MUTATED DEL PEAK 38(20P13) WILD-TYPE
  STAGE I                            10                           79
  STAGE IA                           11                           70
  STAGE IB                            2                            6
  STAGE II                            0                            3
  STAGE IIA                          60                          293
  STAGE IIB                          33                          212
  STAGE III                           0                            2
  STAGE IIIA                         24                          126
  STAGE IIIB                          6                           23
  STAGE IIIC                          7                           56
  STAGE IV                            6                           14
  STAGE TIS                           0                            1
  STAGE X                             0                           13
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                            T1  T2  T3  T4
  DEL PEAK 38(20P13) MUTATED    36 100  16   7
  DEL PEAK 38(20P13) WILD-TYPE 236 516 114  33
D67V4, multiclass
    clus
vv   DEL PEAK 38(20P13) MUTATED DEL PEAK 38(20P13) WILD-TYPE
  T1                         36                          236
  T2                        100                          516
  T3                         16                          114
  T4                          7                           33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                            N0  N1  N2  N3
  DEL PEAK 38(20P13) MUTATED    76  51  19  11
  DEL PEAK 38(20P13) WILD-TYPE 425 299  98  64
D67V5, multiclass
    clus
vv   DEL PEAK 38(20P13) MUTATED DEL PEAK 38(20P13) WILD-TYPE
  N0                         76                          425
  N1                         51                          299
  N2                         19                           98
  N3                         11                           64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D67V6, binary
                              cls
clus                             0   1
  DEL PEAK 38(20P13) MUTATED   132   6
  DEL PEAK 38(20P13) WILD-TYPE 747  15
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 38(20P13) MUTATED    132    6
  DEL PEAK 38(20P13) WILD-TYPE  747   15
   clus
vv  DEL PEAK 38(20P13) MUTATED DEL PEAK 38(20P13) WILD-TYPE
  0                        132                          747
  1                          6                           15
[1] 2 2
[1] FALSE
D67V7, binary
                              cls
clus                             0   1
  DEL PEAK 38(20P13) MUTATED   156   3
  DEL PEAK 38(20P13) WILD-TYPE 895   8
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 38(20P13) MUTATED    156    3
  DEL PEAK 38(20P13) WILD-TYPE  895    8
        clus
vv       DEL PEAK 38(20P13) MUTATED DEL PEAK 38(20P13) WILD-TYPE
  FEMALE                        156                          895
  MALE                            3                            8
[1] 2 2
[1] FALSE
                              vv
clus                           INFILTRATING CARCINOMA NOS
  DEL PEAK 38(20P13) MUTATED                            1
  DEL PEAK 38(20P13) WILD-TYPE                          0
                              vv
clus                           INFILTRATING DUCTAL CARCINOMA
  DEL PEAK 38(20P13) MUTATED                             136
  DEL PEAK 38(20P13) WILD-TYPE                           627
                              vv
clus                           INFILTRATING LOBULAR CARCINOMA
  DEL PEAK 38(20P13) MUTATED                               10
  DEL PEAK 38(20P13) WILD-TYPE                            182
                              vv
clus                           MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  DEL PEAK 38(20P13) MUTATED                     2                     0
  DEL PEAK 38(20P13) WILD-TYPE                   4                     4
                              vv
clus                           MIXED HISTOLOGY (PLEASE SPECIFY)
  DEL PEAK 38(20P13) MUTATED                                  2
  DEL PEAK 38(20P13) WILD-TYPE                               28
                              vv
clus                           MUCINOUS CARCINOMA OTHER  SPECIFY
  DEL PEAK 38(20P13) MUTATED                    1              7
  DEL PEAK 38(20P13) WILD-TYPE                 16             41
D67V8, multiclass
                                  clus
vv                                 DEL PEAK 38(20P13) MUTATED
  INFILTRATING CARCINOMA NOS                                1
  INFILTRATING DUCTAL CARCINOMA                           136
  INFILTRATING LOBULAR CARCINOMA                           10
  MEDULLARY CARCINOMA                                       2
  METAPLASTIC CARCINOMA                                     0
  MIXED HISTOLOGY (PLEASE SPECIFY)                          2
  MUCINOUS CARCINOMA                                        1
  OTHER  SPECIFY                                            7
                                  clus
vv                                 DEL PEAK 38(20P13) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                  0
  INFILTRATING DUCTAL CARCINOMA                             627
  INFILTRATING LOBULAR CARCINOMA                            182
  MEDULLARY CARCINOMA                                         4
  METAPLASTIC CARCINOMA                                       4
  MIXED HISTOLOGY (PLEASE SPECIFY)                           28
  MUCINOUS CARCINOMA                                         16
  OTHER  SPECIFY                                             41
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D67V9, binary
                              cls
clus                             0   1
  DEL PEAK 38(20P13) MUTATED    51 108
  DEL PEAK 38(20P13) WILD-TYPE 237 666
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 38(20P13) MUTATED     51  108
  DEL PEAK 38(20P13) WILD-TYPE  237  666
     clus
vv    DEL PEAK 38(20P13) MUTATED DEL PEAK 38(20P13) WILD-TYPE
  NO                          51                          237
  YES                        108                          666
[1] 2 2
[1] FALSE
D67V10, continuous
                              vv
clus                           AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 38(20P13) MUTATED                                  0    11
  DEL PEAK 38(20P13) WILD-TYPE                                1    49
                              vv
clus                           BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 38(20P13) MUTATED                          33    98
  DEL PEAK 38(20P13) WILD-TYPE                       137   638
D67V11, multiclass
                                  clus
vv                                 DEL PEAK 38(20P13) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                          0
  ASIAN                                                    11
  BLACK OR AFRICAN AMERICAN                                33
  WHITE                                                    98
                                  clus
vv                                 DEL PEAK 38(20P13) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                            1
  ASIAN                                                      49
  BLACK OR AFRICAN AMERICAN                                 137
  WHITE                                                     638
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D67V12, binary
                              cls
clus                             0   1
  DEL PEAK 38(20P13) MUTATED     4 126
  DEL PEAK 38(20P13) WILD-TYPE  34 732
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 38(20P13) MUTATED      4  126
  DEL PEAK 38(20P13) WILD-TYPE   34  732
                        clus
vv                       DEL PEAK 38(20P13) MUTATED
  HISPANIC OR LATINO                              4
  NOT HISPANIC OR LATINO                        126
                        clus
vv                       DEL PEAK 38(20P13) WILD-TYPE
  HISPANIC OR LATINO                               34
  NOT HISPANIC OR LATINO                          732
[1] 2 2
[1] FALSE

Clustering(68) Variable = DEL PEAK 39(21Q11.2) MUTATION ANALYSIS
D68V1, survival
                                sevent
clus2                              0   1
  DEL PEAK 39(21Q11.2) MUTATED   180  28
  DEL PEAK 39(21Q11.2) WILD-TYPE 736 100
  DEL PEAK 39(21Q11.2) MUTATED DEL PEAK 39(21Q11.2) WILD-TYPE 
                           208                            836 
  DEL PEAK 39(21Q11.2) MUTATED DEL PEAK 39(21Q11.2) WILD-TYPE 
                            28                            100 
$`DEL PEAK 39(21Q11.2) MUTATED`
TCGA-3C-AALI TCGA-3C-AALJ TCGA-5L-AAT1 TCGA-A1-A0SN TCGA-A2-A04T TCGA-A2-A0CW 
      131.67        42.81        48.36        39.32        73.84       107.93 
TCGA-A2-A0D0 TCGA-A2-A0EU TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0YT TCGA-A2-A1FV 
       67.33        34.29        54.64        27.12        23.77        23.47 
TCGA-A2-A1FW TCGA-A2-A1G1 TCGA-A2-A25B TCGA-A2-A3Y0 TCGA-A7-A0CE TCGA-A7-A0CJ 
       17.36        19.20        42.44        38.37        35.31        30.61 
TCGA-A7-A26G TCGA-A7-A4SD TCGA-A7-A6VX TCGA-A8-A06P TCGA-A8-A06R TCGA-A8-A06U 
       23.74        14.50        10.42        13.02        17.98        29.03 
TCGA-A8-A079 TCGA-A8-A07R TCGA-A8-A08F TCGA-A8-A08G TCGA-A8-A08I TCGA-A8-A08J 
        9.01         8.98        33.01        19.96        12.00        37.05 
TCGA-A8-A08O TCGA-A8-A08P TCGA-A8-A08R TCGA-A8-A08S TCGA-A8-A09A TCGA-A8-A09B 
       31.00        31.00         0.99        33.01         9.99        12.00 
TCGA-A8-A09I TCGA-A8-A09R TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A9 TCGA-AC-A7VB 
       45.07         8.98        19.04        13.02        27.02         8.22 
TCGA-AC-A8OP TCGA-AC-A8OQ TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A0AM 
       20.19         1.12         0.62         2.96         1.78         0.16 
TCGA-AN-A0AR TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FV TCGA-AN-A0FY 
        0.33         6.44         5.65         7.96         0.33         0.33 
TCGA-AN-A0FZ TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AO-A03M TCGA-AO-A03P TCGA-AO-A03R 
        0.33         0.33         0.33        61.35        95.70        68.75 
TCGA-AO-A0J3 TCGA-AO-A0J7 TCGA-AO-A0JB TCGA-AO-A0JD TCGA-AO-A0JE TCGA-AO-A124 
       21.40        20.32        50.70        72.00        76.77       102.58 
TCGA-AQ-A04L TCGA-AQ-A0Y5 TCGA-AQ-A54O TCGA-AQ-A7U7 TCGA-AR-A0TS TCGA-AR-A0TT 
      130.09         5.65        32.91        19.20        74.79        86.66 
TCGA-AR-A0TV TCGA-AR-A0TY TCGA-AR-A0TZ TCGA-AR-A0U1 TCGA-AR-A0U2 TCGA-AR-A1AH 
       42.35        55.86       107.24       101.95        83.87        75.55 
TCGA-AR-A1AP TCGA-AR-A1AU TCGA-AR-A1AW TCGA-AR-A24M TCGA-AR-A24S TCGA-AR-A24U 
       39.98        76.21        63.62        96.89        97.84        53.36 
TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A250 TCGA-AR-A252 TCGA-AR-A2LK TCGA-B6-A0IB 
       85.35        50.96        89.00        73.18        54.21       129.57 
TCGA-B6-A0IE TCGA-B6-A0IK TCGA-B6-A0RH TCGA-B6-A0RP TCGA-B6-A0RS TCGA-B6-A0WV 
       65.72        18.77       189.01       102.77       100.70        79.63 
TCGA-B6-A0WW TCGA-B6-A0WY TCGA-B6-A0X7 TCGA-B6-A1KC TCGA-B6-A1KN TCGA-B6-A2IU 
       18.35       113.79        58.88        43.59       139.17       170.17 
TCGA-B6-A408 TCGA-BH-A0AU TCGA-BH-A0B9 TCGA-BH-A0BL TCGA-BH-A0BR TCGA-BH-A0DE 
       68.12        24.53        51.68        44.05        53.69        31.17 
TCGA-BH-A0DP TCGA-BH-A0E2 TCGA-BH-A0H7 TCGA-BH-A0HU TCGA-BH-A0HX TCGA-BH-A0HY 
       15.65        14.30        23.08        12.89        27.25        50.79 
TCGA-BH-A0W3 TCGA-BH-A18L TCGA-BH-A18V TCGA-BH-A1F2 TCGA-BH-A1FM TCGA-BH-A5J0 
       23.93        26.66        51.16        31.53        45.63        23.51 
TCGA-C8-A12O TCGA-C8-A12Q TCGA-C8-A12U TCGA-C8-A12W TCGA-C8-A130 TCGA-C8-A137 
       12.66        12.66        12.66        12.66         3.16         4.11 
TCGA-C8-A138 TCGA-C8-A1HF TCGA-C8-A1HK TCGA-C8-A1HN TCGA-C8-A26W TCGA-C8-A27B 
        4.08        10.92        12.03         3.25         0.23         0.99 
TCGA-C8-A8HP TCGA-C8-A8HQ TCGA-C8-A8HR TCGA-D8-A145 TCGA-D8-A1J8 TCGA-D8-A1JB 
       13.02        12.49        13.41        13.48        14.17        18.71 
TCGA-D8-A1JC TCGA-D8-A1JD TCGA-D8-A1JF TCGA-D8-A1JM TCGA-D8-A1X6 TCGA-D8-A1XA 
       15.78        18.15        12.03        19.40        17.79        27.58 
TCGA-D8-A1XB TCGA-D8-A1XJ TCGA-D8-A1XL TCGA-D8-A1XR TCGA-D8-A1XT TCGA-D8-A1XY 
       18.15        21.83        19.92        15.85         6.35        16.54 
TCGA-D8-A1XZ TCGA-D8-A1Y1 TCGA-D8-A1Y3 TCGA-D8-A27T TCGA-D8-A27W TCGA-E2-A105 
       15.32         9.93        14.14        13.08        12.26        43.00 
TCGA-E2-A107 TCGA-E2-A109 TCGA-E2-A10C TCGA-E2-A14Y TCGA-E2-A152 TCGA-E2-A15A 
       34.42        46.59        40.11        28.60        27.12        23.34 
TCGA-E2-A15E TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A1IH TCGA-E2-A1IO TCGA-E2-A1L8 
       20.71        18.21        12.92        33.73        20.98        39.62 
TCGA-E2-A1LL TCGA-E2-A56Z TCGA-E2-A574 TCGA-E9-A1N8 TCGA-E9-A1N9 TCGA-E9-A1NF 
       43.04         8.28        26.56        12.00        13.12        35.24 
TCGA-E9-A1R0 TCGA-E9-A1R4 TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RG TCGA-E9-A226 
       28.27         6.12        32.09        32.09        21.27        34.13 
TCGA-E9-A228 TCGA-E9-A22A TCGA-E9-A247 TCGA-E9-A248 TCGA-E9-A295 TCGA-E9-A3QA 
       12.53        39.09        27.22         1.94         0.72        30.18 
TCGA-E9-A5FL TCGA-EW-A1IW TCGA-EW-A1J6 TCGA-EW-A1OY TCGA-EW-A2FS TCGA-GI-A2C8 
        0.79        12.20        28.77        29.85        52.73         7.40 
TCGA-GI-A2C9 TCGA-GM-A2DB TCGA-GM-A2DL TCGA-GM-A4E0 TCGA-HN-A2NL TCGA-JL-A3YX 
      109.87        79.10       115.69        72.03         2.60        11.57 
TCGA-LD-A7W5 TCGA-LL-A5YM TCGA-LL-A7SZ TCGA-OL-A5RZ TCGA-OL-A66N TCGA-OL-A6VQ 
        7.10        15.32        14.70        22.32        26.04        19.73 
TCGA-PL-A8LX TCGA-S3-A6ZF TCGA-S3-A6ZG TCGA-S3-AA17 
        0.16        16.50        13.12        13.94 

$`DEL PEAK 39(21Q11.2) WILD-TYPE`
TCGA-3C-AAAU TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT0 TCGA-5T-A9QA TCGA-A1-A0SB 
      129.14        40.14        11.44        48.56         9.96         8.52 
TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI 
       14.37        43.43        48.10        14.27        47.24        20.88 
TCGA-A1-A0SJ TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SO TCGA-A1-A0SP TCGA-A1-A0SQ 
       13.68        31.79         7.96        28.01        19.20        18.21 
TCGA-A2-A04N TCGA-A2-A04P TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04U TCGA-A2-A04V 
      104.81        18.02        78.41       121.94        87.25        63.12 
TCGA-A2-A04W TCGA-A2-A04X TCGA-A2-A04Y TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CM 
      101.98        55.43        36.13       136.73        99.12        24.79 
TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CQ TCGA-A2-A0CR TCGA-A2-A0CS TCGA-A2-A0CT 
      114.81        92.48        88.60       107.93        75.55        75.25 
TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CX TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 
        5.19        98.99        56.81        34.55        33.76        61.58 
TCGA-A2-A0D4 TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0EQ 
       25.22       101.72       134.40        80.28       107.61        79.76 
TCGA-A2-A0ER TCGA-A2-A0ES TCGA-A2-A0ET TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX 
       74.40        72.00        35.05        31.82        61.94        24.72 
TCGA-A2-A0EY TCGA-A2-A0ST TCGA-A2-A0SW TCGA-A2-A0SX TCGA-A2-A0SY TCGA-A2-A0T0 
       63.29        99.19        44.88        50.43        44.28        17.52 
TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T4 TCGA-A2-A0T5 TCGA-A2-A0T6 
       17.13         8.38        49.84        20.52        17.46        18.90 
TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YE TCGA-A2-A0YF TCGA-A2-A0YG 
       20.75        32.55        25.28        18.21        50.47        21.90 
TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A0YM 
       21.67        49.48        18.61        19.33        48.46        31.73 
TCGA-A2-A1FX TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G4 TCGA-A2-A1G6 TCGA-A2-A259 
       60.72        22.45        20.25        19.56        16.47        52.47 
TCGA-A2-A25A TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC 
      107.70        17.19        18.15       105.34        10.59        20.88 
TCGA-A2-A3KD TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW 
       39.65        33.93        83.01        29.98        32.75        49.48 
TCGA-A2-A3XX TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4RY 
       47.31        34.98        50.37         7.30        24.39        21.30 
TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CD TCGA-A7-A0CG 
       23.21        26.96        21.14        21.90        38.30        34.29 
TCGA-A7-A0CH TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A0DC TCGA-A7-A13D 
       35.47        37.45        35.67        33.11        29.79        31.73 
TCGA-A7-A13E TCGA-A7-A13F TCGA-A7-A13G TCGA-A7-A13H TCGA-A7-A26E TCGA-A7-A26F 
       20.19        25.15        23.61        29.56        31.36        24.26 
TCGA-A7-A26H TCGA-A7-A26I TCGA-A7-A26J TCGA-A7-A2KD TCGA-A7-A3IY TCGA-A7-A3IZ 
       23.80        21.73        20.61        22.32        11.34        10.59 
TCGA-A7-A3J0 TCGA-A7-A3J1 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A426 TCGA-A7-A4SA 
       10.29        11.28        13.41        14.70        11.97        14.93 
TCGA-A7-A4SB TCGA-A7-A4SE TCGA-A7-A4SF TCGA-A7-A56D TCGA-A7-A5ZV TCGA-A7-A5ZW 
       13.74        21.17        17.92        14.73        12.10        10.72 
TCGA-A7-A5ZX TCGA-A7-A6VV TCGA-A7-A6VW TCGA-A7-A6VY TCGA-A8-A06O TCGA-A8-A06Q 
       11.05        10.29         9.37         8.75        13.02         1.02 
TCGA-A8-A06T TCGA-A8-A06X TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A076 
       53.06        31.00        26.01         1.02        17.03        53.98 
TCGA-A8-A07B TCGA-A8-A07E TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07J 
       43.00        19.99        18.97        18.97        14.01        12.00 
TCGA-A8-A07L TCGA-A8-A07O TCGA-A8-A07P TCGA-A8-A07S TCGA-A8-A07U TCGA-A8-A07W 
       32.05         9.99        10.98         7.99        24.99         9.99 
TCGA-A8-A07Z TCGA-A8-A082 TCGA-A8-A084 TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A 
       45.07        18.05        15.06        36.95        13.02         0.99 
TCGA-A8-A08B TCGA-A8-A08C TCGA-A8-A08L TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A08Z 
       38.01        28.96         9.99       112.08        43.00        40.01 
TCGA-A8-A091 TCGA-A8-A092 TCGA-A8-A093 TCGA-A8-A095 TCGA-A8-A097 TCGA-A8-A099 
       33.01        30.97        17.95        41.98        12.00         9.99 
TCGA-A8-A09C TCGA-A8-A09D TCGA-A8-A09E TCGA-A8-A09K TCGA-A8-A09M TCGA-A8-A09N 
        1.02        50.04        49.05        29.98        33.07         1.02 
TCGA-A8-A09Q TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A09X TCGA-A8-A0A1 
       25.02        19.04        15.02         0.99        14.01        12.00 
TCGA-A8-A0A6 TCGA-A8-A0A7 TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23E 
       21.04         0.99        17.03        38.04         0.95         2.37 
TCGA-AC-A23G TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FB 
       10.85         5.72         1.48        38.53        99.35        40.57 
TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A2QH 
       55.43        36.99        38.79        26.04        50.70        33.04 
TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QP 
        0.92         2.27        32.45        16.31        14.83        22.19 
TCGA-AC-A3TN TCGA-AC-A3W5 TCGA-AC-A3W6 TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A5XS 
       14.99        16.57        19.79        23.24        24.79         1.55 
TCGA-AC-A62V TCGA-AC-A62X TCGA-AC-A62Y TCGA-AC-A6IV TCGA-AC-A6IW TCGA-AC-A6IX 
       11.44        13.71        17.42        18.67        13.58        12.26 
TCGA-AC-A6NO TCGA-AC-A7VC TCGA-AC-A8OR TCGA-AC-A8OS TCGA-AN-A03X TCGA-AN-A03Y 
        1.68         0.03         1.32         2.30         0.33         0.33 
TCGA-AN-A041 TCGA-AN-A046 TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AK TCGA-AN-A0AL 
        0.23         0.33         1.71         9.96         7.36         6.51 
TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FN TCGA-AN-A0FS 
        0.33         0.33         7.00         7.59         7.17         6.28 
TCGA-AN-A0FT TCGA-AN-A0FW TCGA-AN-A0FX TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO 
        7.04         0.36         0.33         0.33         0.33        12.33 
TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XU TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03L 
        0.30         0.33         0.33         5.33         5.59        80.28 
TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J2 
       66.77        81.63        47.87        58.95        29.13        32.78 
TCGA-AO-A0J4 TCGA-AO-A0J5 TCGA-AO-A0J6 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA 
       52.18        26.04        37.48        22.36        53.03        21.53 
TCGA-AO-A0JC TCGA-AO-A0JF TCGA-AO-A0JG TCGA-AO-A0JI TCGA-AO-A0JJ TCGA-AO-A0JL 
       50.86        21.37        26.24        50.24        62.04        55.33 
TCGA-AO-A0JM TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 TCGA-AO-A129 TCGA-AO-A12A 
       71.80        99.25       108.72       106.78       108.03        90.58 
TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A12E TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A12H 
       98.27        64.04        57.30        48.36        41.62        28.37 
TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KQ TCGA-AO-A1KR TCGA-AO-A1KS TCGA-AO-A1KT 
       14.73        82.62        61.87        70.39         0.53        17.79 
TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AQ-A54N TCGA-AR-A0TP 
       24.79        26.93        15.62        32.52         2.56       111.32 
TCGA-AR-A0TQ TCGA-AR-A0TR TCGA-AR-A0TW TCGA-AR-A0TX TCGA-AR-A0U0 TCGA-AR-A0U3 
       73.64         5.26        98.93        64.83        65.36       114.02 
TCGA-AR-A0U4 TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AM 
       85.97        61.84        52.77        51.25        48.82        76.11 
TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AQ TCGA-AR-A1AR TCGA-AR-A1AS TCGA-AR-A1AV 
       43.73        43.56        43.07        17.23        37.81        61.28 
TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24K TCGA-AR-A24L TCGA-AR-A24N 
       62.14        33.73       160.90        50.89        94.22        78.51 
TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24Q TCGA-AR-A24R TCGA-AR-A24T TCGA-AR-A24X 
       84.20         2.76       104.28        87.22        76.01        83.77 
TCGA-AR-A24Z TCGA-AR-A251 TCGA-AR-A254 TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LE 
       79.00        78.48        72.76        58.92        93.83       143.21 
TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LL TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO 
       20.25        62.86        66.15        52.11        38.17        39.39 
TCGA-AR-A2LQ TCGA-AR-A2LR TCGA-AR-A5QM TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ 
       40.54        20.38        54.74        16.04        20.45        10.59 
TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0I9 TCGA-B6-A0IA TCGA-B6-A0IC 
       77.62       143.38       149.59        12.13       220.90        50.70 
TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IO 
      146.50       112.37       176.98       126.12        84.59       110.14 
TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RI TCGA-B6-A0RL 
      110.93       140.88       211.56        68.45       234.28        81.17 
TCGA-B6-A0RM TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RU 
       78.02       172.96       162.05       140.48        89.46       131.21 
TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WX TCGA-B6-A0WZ TCGA-B6-A0X0 
      157.41        97.48       188.68        21.47       129.57       129.70 
TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A401 
      186.48        28.27        68.94       101.52        73.51        85.35 
TCGA-B6-A402 TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AV TCGA-BH-A0AW TCGA-BH-A0AY 
       74.99       103.63        71.15        59.84        20.45        25.55 
TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B2 TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B5 
       28.50        46.95        40.83        39.55        39.16        48.36 
TCGA-BH-A0B6 TCGA-BH-A0B7 TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BF 
       56.94        56.98        37.22        32.02        18.21        25.71 
TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BP TCGA-BH-A0BQ 
       24.85        21.70        61.68        35.67        48.69        27.19 
TCGA-BH-A0BS TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0BW TCGA-BH-A0BZ TCGA-BH-A0C0 
       53.95        45.57        49.94        11.67        49.05        41.75 
TCGA-BH-A0C1 TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DG TCGA-BH-A0DH 
       44.02        48.13        42.90        45.83        23.44        38.01 
TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DO TCGA-BH-A0DQ TCGA-BH-A0DS 
       22.13        13.91        48.23        17.26         3.22         2.56 
TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E1 
       38.47        67.86        47.41        16.27         4.41        15.68 
TCGA-BH-A0E6 TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EA TCGA-BH-A0EB TCGA-BH-A0EE 
        9.63        44.81        46.19        32.58        24.49        31.00 
TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 
       24.43        30.35        10.78        15.16        37.78        35.51 
TCGA-BH-A0H6 TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HI TCGA-BH-A0HK 
       24.56        41.00        52.96        26.50        20.38         5.85 
TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HW TCGA-BH-A0RX TCGA-BH-A0W4 
        2.50        13.61        36.85        51.32         5.59        24.95 
TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A0WA TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18I 
       42.35        44.81        23.05         8.81         2.01         7.23 
TCGA-BH-A18J TCGA-BH-A18K TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18Q 
       20.12        90.84        72.56        37.74        30.28        55.63 
TCGA-BH-A18R TCGA-BH-A18S TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A1EN TCGA-BH-A1EO 
       37.55        66.05         7.36        51.39        69.93        91.99 
TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1EX 
      113.82        82.85        42.28        12.00        55.69        49.58 
TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F5 TCGA-BH-A1F6 TCGA-BH-A1F8 TCGA-BH-A1FB 
       17.69        25.81        89.16        97.48        24.66       120.62 
TCGA-BH-A1FC TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ 
      114.15        33.17        74.73       122.89        36.92        63.35 
TCGA-BH-A1FL TCGA-BH-A1FN TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A201 TCGA-BH-A202 
       55.00        72.07       144.59        72.07        28.14        26.14 
TCGA-BH-A203 TCGA-BH-A204 TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A28Q 
       38.60        83.31        57.83       130.16        10.65         6.44 
TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5IZ TCGA-BH-A6R8 
       20.12        10.52       109.28         8.94        18.64         9.63 
TCGA-BH-A6R9 TCGA-BH-A8FY TCGA-BH-A8FZ TCGA-BH-A8G0 TCGA-BH-AB28 TCGA-C8-A12L 
        5.26         9.70        18.87        21.76         9.44        11.93 
TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12P TCGA-C8-A12V TCGA-C8-A12X TCGA-C8-A12Z 
       11.77        11.77        11.77        12.66        12.66         0.39 
TCGA-C8-A131 TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A135 TCGA-C8-A1HE TCGA-C8-A1HG 
        2.24         1.87         1.12         1.05        12.33        11.34 
TCGA-C8-A1HI TCGA-C8-A1HJ TCGA-C8-A1HL TCGA-C8-A1HM TCGA-C8-A26V TCGA-C8-A26X 
       11.28         0.16        10.42         2.30         0.30         0.36 
TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A275 TCGA-C8-A278 
        0.43         8.28         9.67         9.53         0.03         9.50 
TCGA-C8-A27A TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-C8-A9FZ TCGA-D8-A13Y TCGA-D8-A13Z 
       12.20         0.03         0.23        19.46        11.90        20.88 
TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A146 TCGA-D8-A147 
       13.25        20.58        13.97        14.17        21.14        19.20 
TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JE TCGA-D8-A1JG TCGA-D8-A1JH TCGA-D8-A1JI 
       17.49        16.50        18.90        12.03        14.01        18.97 
TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JN TCGA-D8-A1JP TCGA-D8-A1JS 
       20.09        20.12        20.09        20.38        21.01        12.20 
TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1X9 
       13.32        14.70        18.58        16.73        25.74        23.90 
TCGA-D8-A1XC TCGA-D8-A1XD TCGA-D8-A1XF TCGA-D8-A1XG TCGA-D8-A1XK TCGA-D8-A1XM 
       12.39        17.16        15.22        14.73        14.50        17.69 
TCGA-D8-A1XO TCGA-D8-A1XQ TCGA-D8-A1XS TCGA-D8-A1XU TCGA-D8-A1XV TCGA-D8-A1XW 
       15.55        16.41        16.31        12.99        15.16        12.66 
TCGA-D8-A1Y0 TCGA-D8-A1Y2 TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27G TCGA-D8-A27H 
       15.52        14.24        17.42        16.04        13.45        13.05 
TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27P 
       14.43         9.44        16.41        13.48         4.80         0.76 
TCGA-D8-A27R TCGA-D8-A27V TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-D8-A73U 
       10.09        12.53        33.37        18.51        21.67        16.18 
TCGA-D8-A73W TCGA-D8-A73X TCGA-E2-A108 TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10E 
        8.02        12.10        27.52        40.41        37.51        28.44 
TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14Q TCGA-E2-A14R 
       28.87        47.15        44.68        40.96        38.24        38.60 
TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14W TCGA-E2-A14X 
       33.17        33.30        43.33        34.26        32.02        31.96 
TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A153 TCGA-E2-A154 TCGA-E2-A155 TCGA-E2-A156 
       18.51        25.41        23.24        19.43        21.04        23.87 
TCGA-E2-A158 TCGA-E2-A159 TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15F TCGA-E2-A15I 
       14.79        25.05        22.82        17.29        21.63        17.42 
TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15O TCGA-E2-A15P 
       19.40         9.04        20.58        11.05        13.02        19.56 
TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B1 
       17.06        14.07        14.99        60.53        53.62        53.03 
TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BC TCGA-E2-A1BD TCGA-E2-A1IE 
       33.01        32.35        28.50        16.47        17.10        38.30 
TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL 
       37.41        32.78        33.70        28.44        22.65         3.88 
TCGA-E2-A1IN TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L9 TCGA-E2-A1LA 
       22.19        11.08        54.18        27.42        19.66        24.59 
TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LG TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK 
       40.47        28.90        18.87       106.75       102.61         8.75 
TCGA-E2-A2P5 TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A570 TCGA-E2-A573 TCGA-E2-A576 
       16.93         5.52        15.72        30.61        34.92        34.29 
TCGA-E2-A9RU TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N6 TCGA-E9-A1NA 
       12.85        34.82        32.88        36.82        13.48        36.56 
TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NG TCGA-E9-A1NI TCGA-E9-A1QZ 
       39.55        12.59        35.77        25.84         9.86        11.90 
TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RC 
       34.95         2.56         3.02         2.76        21.21        40.24 
TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RH TCGA-E9-A1RI TCGA-E9-A227 
        1.12        34.65         6.58        34.59        35.64        32.05 
TCGA-E9-A229 TCGA-E9-A22B TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A22H 
       13.32        22.75        41.03        12.89        23.51        20.71 
TCGA-E9-A243 TCGA-E9-A244 TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A2JS TCGA-E9-A2JT 
       17.06         0.69         7.13        24.56        29.72         0.76 
TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A54Y TCGA-E9-A5FK 
       26.07        18.41        15.72        12.33        23.84        14.70 
TCGA-E9-A5UO TCGA-E9-A5UP TCGA-E9-A6HE TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ 
       13.81        14.40        15.39        39.72         8.48        18.21 
TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J5 TCGA-EW-A1OV TCGA-EW-A1OW 
       18.90        13.25        16.57        15.68        25.94        22.82 
TCGA-EW-A1OX TCGA-EW-A1OZ TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P3 TCGA-EW-A1P4 
       29.95        40.41        41.13        39.78        52.96        29.82 
TCGA-EW-A1P5 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1P8 TCGA-EW-A1PA TCGA-EW-A1PB 
       23.11        18.48        30.08         7.86        18.90        19.99 
TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PF TCGA-EW-A1PG TCGA-EW-A1PH 
        6.15        13.94        10.52        14.43        34.55        19.96 
TCGA-EW-A2FR TCGA-EW-A2FV TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A3U0 TCGA-EW-A423 
       55.00        25.91        22.09        34.03        17.49        10.16 
TCGA-EW-A424 TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DC TCGA-GM-A2DD TCGA-GM-A2DF 
       23.51        59.57       216.76        83.34        75.02        70.85 
TCGA-GM-A2DH TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A2DO 
       72.10        85.15        86.96       106.06       101.62        85.35 
TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XL TCGA-GM-A3XN TCGA-GM-A5PV 
      110.50        38.20        43.73        69.30        66.38        13.55 
TCGA-GM-A5PX TCGA-HN-A2OB TCGA-JL-A3YW TCGA-LD-A66U TCGA-LD-A74U TCGA-LD-A7W6 
       18.12        62.43        11.84        21.24        13.22        13.28 
TCGA-LD-A9QF TCGA-LL-A440 TCGA-LL-A441 TCGA-LL-A442 TCGA-LL-A50Y TCGA-LL-A5YL 
       10.62        24.95        11.44        10.95        25.05        17.06 
TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LL-A5YP TCGA-LL-A6FP TCGA-LL-A6FQ TCGA-LL-A6FR 
       14.70        14.47        14.79        22.26         2.63        16.08 
TCGA-LL-A73Y TCGA-LL-A73Z TCGA-LL-A740 TCGA-LL-A7T0 TCGA-LL-A8F5 TCGA-LL-A9Q3 
       15.68         7.46        14.50        12.36        14.73        14.07 
TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5D7 TCGA-OL-A5D8 
       27.91        22.39         2.10        36.30        58.52        31.99 
TCGA-OL-A5DA TCGA-OL-A5RU TCGA-OL-A5RV TCGA-OL-A5RW TCGA-OL-A5RX TCGA-OL-A5RY 
       58.62        40.08        34.92        36.36        28.87        24.72 
TCGA-OL-A5S0 TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66K TCGA-OL-A66L 
       20.38        26.70        23.47        65.62        41.92        42.77 
TCGA-OL-A66O TCGA-OL-A66P TCGA-OL-A6VO TCGA-OL-A6VR TCGA-OL-A97C TCGA-PE-A5DC 
       17.36        14.07        28.21        40.11         8.91        47.01 
TCGA-PE-A5DD TCGA-PE-A5DE TCGA-PL-A8LY TCGA-PL-A8LZ TCGA-S3-A6ZH TCGA-S3-AA0Z 
       64.21        86.96         0.26         9.93        16.93        16.80 
TCGA-S3-AA10 TCGA-S3-AA11 TCGA-S3-AA12 TCGA-S3-AA14 TCGA-S3-AA15 TCGA-UL-AAZ6 
       15.39        13.84        15.35        14.96        13.84        17.03 
TCGA-UU-A93S TCGA-W8-A86G TCGA-WT-AB41 TCGA-WT-AB44 TCGA-XX-A899 TCGA-XX-A89A 
        3.81        11.41        52.96        29.03        15.35        16.04 
TCGA-Z7-A8R5 TCGA-Z7-A8R6 
      108.07       107.05 

  DEL PEAK 39(21Q11.2) MUTATED DEL PEAK 39(21Q11.2) WILD-TYPE 
                          0.16                           0.03 
  DEL PEAK 39(21Q11.2) MUTATED DEL PEAK 39(21Q11.2) WILD-TYPE 
                        189.01                         234.28 
  DEL PEAK 39(21Q11.2) MUTATED DEL PEAK 39(21Q11.2) WILD-TYPE 
                         23.49                          24.72 
[1] "0.2 - 189.0 (23.5)" "0.0 - 234.3 (24.7)"
[1] "hr=" "1.2"
D68V2, continuous
                                vv
clus                             STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  DEL PEAK 39(21Q11.2) MUTATED        12       11        1        0        67
  DEL PEAK 39(21Q11.2) WILD-TYPE      77       70        7        3       286
                                vv
clus                             STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  DEL PEAK 39(21Q11.2) MUTATED          51         1         38         12
  DEL PEAK 39(21Q11.2) WILD-TYPE       194         1        112         17
                                vv
clus                             STAGE IIIC STAGE IV STAGE TIS STAGE X
  DEL PEAK 39(21Q11.2) MUTATED            8        7         1       3
  DEL PEAK 39(21Q11.2) WILD-TYPE         55       13         0      10
D68V3, multiclass
            clus
vv           DEL PEAK 39(21Q11.2) MUTATED DEL PEAK 39(21Q11.2) WILD-TYPE
  STAGE I                              12                             77
  STAGE IA                             11                             70
  STAGE IB                              1                              7
  STAGE II                              0                              3
  STAGE IIA                            67                            286
  STAGE IIB                            51                            194
  STAGE III                             1                              1
  STAGE IIIA                           38                            112
  STAGE IIIB                           12                             17
  STAGE IIIC                            8                             55
  STAGE IV                              7                             13
  STAGE TIS                             1                              0
  STAGE X                               3                             10
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              T1  T2  T3  T4
  DEL PEAK 39(21Q11.2) MUTATED    41 136  21  13
  DEL PEAK 39(21Q11.2) WILD-TYPE 231 480 109  27
D68V4, multiclass
    clus
vv   DEL PEAK 39(21Q11.2) MUTATED DEL PEAK 39(21Q11.2) WILD-TYPE
  T1                           41                            231
  T2                          136                            480
  T3                           21                            109
  T4                           13                             27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              N0  N1  N2  N3
  DEL PEAK 39(21Q11.2) MUTATED    88  73  36  12
  DEL PEAK 39(21Q11.2) WILD-TYPE 413 277  81  63
D68V5, multiclass
    clus
vv   DEL PEAK 39(21Q11.2) MUTATED DEL PEAK 39(21Q11.2) WILD-TYPE
  N0                           88                            413
  N1                           73                            277
  N2                           36                             81
  N3                           12                             63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D68V6, binary
                                cls
clus                               0   1
  DEL PEAK 39(21Q11.2) MUTATED   178   8
  DEL PEAK 39(21Q11.2) WILD-TYPE 701  13
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 39(21Q11.2) MUTATED    178    8
  DEL PEAK 39(21Q11.2) WILD-TYPE  701   13
   clus
vv  DEL PEAK 39(21Q11.2) MUTATED DEL PEAK 39(21Q11.2) WILD-TYPE
  0                          178                            701
  1                            8                             13
[1] 2 2
[1] FALSE
D68V7, binary
                                cls
clus                               0   1
  DEL PEAK 39(21Q11.2) MUTATED   211   1
  DEL PEAK 39(21Q11.2) WILD-TYPE 840  10
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 39(21Q11.2) MUTATED    211    1
  DEL PEAK 39(21Q11.2) WILD-TYPE  840   10
        clus
vv       DEL PEAK 39(21Q11.2) MUTATED DEL PEAK 39(21Q11.2) WILD-TYPE
  FEMALE                          211                            840
  MALE                              1                             10
[1] 2 2
[1] FALSE
                                vv
clus                             INFILTRATING CARCINOMA NOS
  DEL PEAK 39(21Q11.2) MUTATED                            0
  DEL PEAK 39(21Q11.2) WILD-TYPE                          1
                                vv
clus                             INFILTRATING DUCTAL CARCINOMA
  DEL PEAK 39(21Q11.2) MUTATED                             172
  DEL PEAK 39(21Q11.2) WILD-TYPE                           591
                                vv
clus                             INFILTRATING LOBULAR CARCINOMA
  DEL PEAK 39(21Q11.2) MUTATED                               19
  DEL PEAK 39(21Q11.2) WILD-TYPE                            173
                                vv
clus                             MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  DEL PEAK 39(21Q11.2) MUTATED                     2                     2
  DEL PEAK 39(21Q11.2) WILD-TYPE                   4                     2
                                vv
clus                             MIXED HISTOLOGY (PLEASE SPECIFY)
  DEL PEAK 39(21Q11.2) MUTATED                                  9
  DEL PEAK 39(21Q11.2) WILD-TYPE                               21
                                vv
clus                             MUCINOUS CARCINOMA OTHER  SPECIFY
  DEL PEAK 39(21Q11.2) MUTATED                    2              6
  DEL PEAK 39(21Q11.2) WILD-TYPE                 15             42
D68V8, multiclass
                                  clus
vv                                 DEL PEAK 39(21Q11.2) MUTATED
  INFILTRATING CARCINOMA NOS                                  0
  INFILTRATING DUCTAL CARCINOMA                             172
  INFILTRATING LOBULAR CARCINOMA                             19
  MEDULLARY CARCINOMA                                         2
  METAPLASTIC CARCINOMA                                       2
  MIXED HISTOLOGY (PLEASE SPECIFY)                            9
  MUCINOUS CARCINOMA                                          2
  OTHER  SPECIFY                                              6
                                  clus
vv                                 DEL PEAK 39(21Q11.2) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                    1
  INFILTRATING DUCTAL CARCINOMA                               591
  INFILTRATING LOBULAR CARCINOMA                              173
  MEDULLARY CARCINOMA                                           4
  METAPLASTIC CARCINOMA                                         2
  MIXED HISTOLOGY (PLEASE SPECIFY)                             21
  MUCINOUS CARCINOMA                                           15
  OTHER  SPECIFY                                               42
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D68V9, binary
                                cls
clus                               0   1
  DEL PEAK 39(21Q11.2) MUTATED    61 151
  DEL PEAK 39(21Q11.2) WILD-TYPE 227 623
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 39(21Q11.2) MUTATED     61  151
  DEL PEAK 39(21Q11.2) WILD-TYPE  227  623
     clus
vv    DEL PEAK 39(21Q11.2) MUTATED DEL PEAK 39(21Q11.2) WILD-TYPE
  NO                            61                            227
  YES                          151                            623
[1] 2 2
[1] FALSE
D68V10, continuous
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 39(21Q11.2) MUTATED                                  0    17
  DEL PEAK 39(21Q11.2) WILD-TYPE                                1    43
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 39(21Q11.2) MUTATED                          36   136
  DEL PEAK 39(21Q11.2) WILD-TYPE                       134   600
D68V11, multiclass
                                  clus
vv                                 DEL PEAK 39(21Q11.2) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            0
  ASIAN                                                      17
  BLACK OR AFRICAN AMERICAN                                  36
  WHITE                                                     136
                                  clus
vv                                 DEL PEAK 39(21Q11.2) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              1
  ASIAN                                                        43
  BLACK OR AFRICAN AMERICAN                                   134
  WHITE                                                       600
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D68V12, binary
                                cls
clus                               0   1
  DEL PEAK 39(21Q11.2) MUTATED     5 174
  DEL PEAK 39(21Q11.2) WILD-TYPE  33 684
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 39(21Q11.2) MUTATED      5  174
  DEL PEAK 39(21Q11.2) WILD-TYPE   33  684
                        clus
vv                       DEL PEAK 39(21Q11.2) MUTATED
  HISPANIC OR LATINO                                5
  NOT HISPANIC OR LATINO                          174
                        clus
vv                       DEL PEAK 39(21Q11.2) WILD-TYPE
  HISPANIC OR LATINO                                 33
  NOT HISPANIC OR LATINO                            684
[1] 2 2
[1] FALSE

Clustering(69) Variable = DEL PEAK 40(22Q13.32) MUTATION ANALYSIS
D69V1, survival
                                 sevent
clus2                               0   1
  DEL PEAK 40(22Q13.32) MUTATED   415  60
  DEL PEAK 40(22Q13.32) WILD-TYPE 501  68
  DEL PEAK 40(22Q13.32) MUTATED DEL PEAK 40(22Q13.32) WILD-TYPE 
                            475                             569 
  DEL PEAK 40(22Q13.32) MUTATED DEL PEAK 40(22Q13.32) WILD-TYPE 
                             60                              68 
$`DEL PEAK 40(22Q13.32) MUTATED`
TCGA-3C-AAAU TCGA-3C-AALI TCGA-3C-AALJ TCGA-A1-A0SD TCGA-A1-A0SG TCGA-A1-A0SJ 
      129.14       131.67        42.81        14.37        14.27        13.68 
TCGA-A1-A0SK TCGA-A1-A0SN TCGA-A1-A0SO TCGA-A2-A04N TCGA-A2-A04P TCGA-A2-A04Q 
       31.79        39.32        28.01       104.81        18.02        78.41 
TCGA-A2-A04R TCGA-A2-A04V TCGA-A2-A04Y TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CP 
      121.94        63.12        36.13        99.12        24.79        92.48 
TCGA-A2-A0CQ TCGA-A2-A0CR TCGA-A2-A0CS TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW 
       88.60       107.93        75.55         5.19        98.99       107.93 
TCGA-A2-A0D0 TCGA-A2-A0D4 TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0ET TCGA-A2-A0EU 
       67.33        25.22       134.40        80.28        35.05        34.29 
TCGA-A2-A0EW TCGA-A2-A0SU TCGA-A2-A0SX TCGA-A2-A0T3 TCGA-A2-A0T4 TCGA-A2-A0T6 
       61.94        54.64        50.43        49.84        20.52        18.90 
TCGA-A2-A0T7 TCGA-A2-A0YD TCGA-A2-A0YE TCGA-A2-A0YF TCGA-A2-A0YG TCGA-A2-A0YH 
       20.75        25.28        18.21        50.47        21.90        21.67 
TCGA-A2-A0YT TCGA-A2-A1FW TCGA-A2-A25A TCGA-A2-A25B TCGA-A2-A25C TCGA-A2-A3XS 
       23.77        17.36       107.70        42.44        17.19        33.93 
TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4RY TCGA-A7-A0CE 
       34.98        50.37        38.37         7.30        21.30        35.31 
TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0CJ TCGA-A7-A0DB TCGA-A7-A13E TCGA-A7-A13H 
       34.29        35.47        30.61        33.11        20.19        29.56 
TCGA-A7-A26E TCGA-A7-A26I TCGA-A7-A26J TCGA-A7-A3J1 TCGA-A7-A426 TCGA-A7-A4SB 
       31.36        21.73        20.61        11.28        11.97        13.74 
TCGA-A7-A4SD TCGA-A7-A4SF TCGA-A7-A56D TCGA-A7-A5ZV TCGA-A7-A6VW TCGA-A7-A6VY 
       14.50        17.92        14.73        12.10         9.37         8.75 
TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06R TCGA-A8-A06T TCGA-A8-A06U TCGA-A8-A06X 
       13.02         1.02        17.98        53.06        29.03        31.00 
TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A07B TCGA-A8-A07E 
       26.01         1.02        17.03        53.98        43.00        19.99 
TCGA-A8-A07F TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07W TCGA-A8-A084 TCGA-A8-A085 
       18.97        14.01        12.00         9.99        15.06        36.95 
TCGA-A8-A08G TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08O TCGA-A8-A08S TCGA-A8-A08Z 
       19.96        12.00        37.05        31.00        33.01        40.01 
TCGA-A8-A09B TCGA-A8-A09C TCGA-A8-A09D TCGA-A8-A09E TCGA-A8-A09M TCGA-A8-A09N 
       12.00         1.02        50.04        49.05        33.07         1.02 
TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09W TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A6 
        8.98        19.04         0.99        19.04        13.02        21.04 
TCGA-A8-A0A7 TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-AC-A23G TCGA-AC-A2FF TCGA-AC-A2FM 
        0.99        27.02        17.03        10.85        55.43        26.04 
TCGA-AC-A2QH TCGA-AC-A3BB TCGA-AC-A3HN TCGA-AC-A3QP TCGA-AC-A5XS TCGA-AC-A62Y 
       33.04        32.45        16.31        22.19         1.55        17.42 
TCGA-AC-A6IV TCGA-AC-A6IX TCGA-AC-A6NO TCGA-AC-A7VB TCGA-AC-A8OP TCGA-AN-A041 
       18.67        12.26         1.68         8.22        20.19         0.23 
TCGA-AN-A049 TCGA-AN-A0AJ TCGA-AN-A0AK TCGA-AN-A0AL TCGA-AN-A0AT TCGA-AN-A0FD 
        0.62         9.96         7.36         6.51         0.33         6.44 
TCGA-AN-A0FF TCGA-AN-A0FK TCGA-AN-A0FW TCGA-AN-A0FY TCGA-AN-A0FZ TCGA-AN-A0XO 
        5.65         7.00         0.36         0.33         0.33        12.33 
TCGA-AN-A0XR TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AO-A03L TCGA-AO-A03N 
        0.33         0.33         0.33         0.33        80.28        66.77 
TCGA-AO-A03P TCGA-AO-A0J3 TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA 
       95.70        21.40        20.32        22.36        53.03        21.53 
TCGA-AO-A0JB TCGA-AO-A0JD TCGA-AO-A0JG TCGA-AO-A124 TCGA-AO-A12A TCGA-AO-A12E 
       50.70        72.00        26.24       102.58        90.58        57.30 
TCGA-AO-A1KP TCGA-AO-A1KQ TCGA-AO-A1KS TCGA-AQ-A54N TCGA-AQ-A54O TCGA-AQ-A7U7 
       82.62        61.87         0.53         2.56        32.91        19.20 
TCGA-AR-A0TP TCGA-AR-A0TR TCGA-AR-A0TS TCGA-AR-A0TT TCGA-AR-A0TW TCGA-AR-A0TY 
      111.32         5.26        74.79        86.66        98.93        55.86 
TCGA-AR-A0TZ TCGA-AR-A0U0 TCGA-AR-A0U3 TCGA-AR-A1AH TCGA-AR-A1AJ TCGA-AR-A1AM 
      107.24        65.36       114.02        75.55        52.77        76.11 
TCGA-AR-A1AP TCGA-AR-A1AQ TCGA-AR-A1AR TCGA-AR-A1AV TCGA-AR-A1AY TCGA-AR-A24H 
       39.98        43.07        17.23        61.28        33.73       160.90 
TCGA-AR-A24K TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24R TCGA-AR-A24S TCGA-AR-A24W 
       50.89        84.20         2.76        87.22        97.84        50.96 
TCGA-AR-A24X TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A251 TCGA-AR-A252 TCGA-AR-A255 
       83.77        79.00        89.00        78.48        73.18        58.92 
TCGA-AR-A256 TCGA-AR-A2LK TCGA-AR-A2LO TCGA-AR-A5QP TCGA-B6-A0IG TCGA-B6-A0IO 
       93.83        54.21        39.39        20.45       146.50       110.14 
TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RL TCGA-B6-A0RN TCGA-B6-A0RO 
      140.88       211.56        68.45        81.17       172.96       162.05 
TCGA-B6-A0RP TCGA-B6-A0RS TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A1KN TCGA-B6-A408 
      102.77       100.70        18.35        21.47       139.17        68.12 
TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AY TCGA-BH-A0B0 TCGA-BH-A0B3 TCGA-BH-A0B4 
      103.63        71.15        25.55        46.95        39.55        39.16 
TCGA-BH-A0B5 TCGA-BH-A0B6 TCGA-BH-A0B7 TCGA-BH-A0B9 TCGA-BH-A0BA TCGA-BH-A0BF 
       48.36        56.94        56.98        51.68        37.22        25.71 
TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BR TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0BZ 
       21.70        44.05        53.69        45.57        49.94        49.05 
TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DH TCGA-BH-A0DL TCGA-BH-A0DQ TCGA-BH-A0E0 
       48.13        42.90        38.01        48.23         3.22         4.41 
TCGA-BH-A0E6 TCGA-BH-A0EB TCGA-BH-A0EE TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H9 
        9.63        24.49        31.00        30.35        10.78        41.00 
TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0RX TCGA-BH-A0W3 
       52.96        26.50        36.85        12.89         5.59        23.93 
TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A0WA TCGA-BH-A18F TCGA-BH-A18I TCGA-BH-A18J 
       42.35        44.81        23.05         8.81         7.23        20.12 
TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18M TCGA-BH-A18T TCGA-BH-A1ES TCGA-BH-A1ET 
       90.84        26.66        72.56         7.36       113.82        82.85 
TCGA-BH-A1EU TCGA-BH-A1EX TCGA-BH-A1EY TCGA-BH-A1F5 TCGA-BH-A1F8 TCGA-BH-A1FC 
       42.28        49.58        17.69        89.16        24.66       114.15 
TCGA-BH-A1FD TCGA-BH-A1FL TCGA-BH-A1FM TCGA-BH-A1FN TCGA-BH-A204 TCGA-BH-A208 
       33.17        55.00        45.63        72.07        83.31        57.83 
TCGA-BH-A209 TCGA-BH-A42T TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-BH-A6R8 TCGA-C8-A12M 
      130.16        10.52        18.64        23.51         9.63        11.77 
TCGA-C8-A12U TCGA-C8-A132 TCGA-C8-A138 TCGA-C8-A1HI TCGA-C8-A1HK TCGA-C8-A1HL 
       12.66         1.87         4.08        11.28        12.03        10.42 
TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A26Y TCGA-C8-A274 TCGA-C8-A27A TCGA-C8-A8HP 
        2.30         3.25         0.43         9.53        12.20        13.02 
TCGA-C8-A9FZ TCGA-D8-A13Y TCGA-D8-A13Z TCGA-D8-A143 TCGA-D8-A145 TCGA-D8-A146 
       19.46        11.90        20.88        14.17        13.48        21.14 
TCGA-D8-A1J8 TCGA-D8-A1JB TCGA-D8-A1JD TCGA-D8-A1JG TCGA-D8-A1JJ TCGA-D8-A1JL 
       14.17        18.71        18.15        12.03        20.09        20.09 
TCGA-D8-A1JN TCGA-D8-A1JP TCGA-D8-A1X5 TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XB 
       20.38        21.01        18.58        23.90        27.58        18.15 
TCGA-D8-A1XD TCGA-D8-A1XK TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XR 
       17.16        14.50        19.92        17.69        15.55        15.85 
TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 TCGA-D8-A1Y3 
        6.35        12.99        15.52         9.93        14.24        14.14 
TCGA-D8-A27I TCGA-D8-A27L TCGA-D8-A27T TCGA-D8-A3Z5 TCGA-D8-A73X TCGA-E2-A105 
       14.43        16.41        13.08        33.37        12.10        43.00 
TCGA-E2-A107 TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10C TCGA-E2-A10F TCGA-E2-A14O 
       34.42        46.59        40.41        40.11        28.87        44.68 
TCGA-E2-A14Q TCGA-E2-A14T TCGA-E2-A14V TCGA-E2-A14W TCGA-E2-A14Z TCGA-E2-A150 
       38.24        33.30        34.26        32.02        18.51        25.41 
TCGA-E2-A152 TCGA-E2-A153 TCGA-E2-A158 TCGA-E2-A159 TCGA-E2-A15C TCGA-E2-A15E 
       27.12        23.24        14.79        25.05        22.82        20.71 
TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15I TCGA-E2-A15M TCGA-E2-A15O 
       21.63        18.21        12.92        17.42        11.05        13.02 
TCGA-E2-A15P TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B1 TCGA-E2-A1B5 TCGA-E2-A1BD 
       19.56        14.99        60.53        53.03        32.35        17.10 
TCGA-E2-A1IF TCGA-E2-A1IH TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IL TCGA-E2-A1IN 
       37.41        33.73        33.70        28.44         3.88        22.19 
TCGA-E2-A1IO TCGA-E2-A1L8 TCGA-E2-A1LE TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A2P5 
       20.98        39.62        28.90       102.61         8.75        16.93 
TCGA-E2-A56Z TCGA-E2-A573 TCGA-E2-A574 TCGA-E2-A576 TCGA-E2-A9RU TCGA-E9-A1N3 
        8.28        34.92        26.56        34.29        12.85        34.82 
TCGA-E9-A1N5 TCGA-E9-A1N8 TCGA-E9-A1N9 TCGA-E9-A1NA TCGA-E9-A1ND TCGA-E9-A1NE 
       36.82        12.00        13.12        36.56        12.59        35.77 
TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1NI TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R4 
       35.24        25.84         9.86        34.95         2.56         6.12 
TCGA-E9-A1R6 TCGA-E9-A1RA TCGA-E9-A1RC TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RF 
        2.76        32.09        40.24         1.12        34.65         6.58 
TCGA-E9-A1RG TCGA-E9-A1RI TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22D 
       21.27        35.64        12.53        13.32        39.09        41.03 
TCGA-E9-A22E TCGA-E9-A22H TCGA-E9-A244 TCGA-E9-A247 TCGA-E9-A248 TCGA-E9-A249 
       12.89        20.71         0.69        27.22         1.94         7.13 
TCGA-E9-A24A TCGA-E9-A2JS TCGA-E9-A3HO TCGA-E9-A3X8 TCGA-E9-A54Y TCGA-E9-A5FK 
       24.56        29.72        26.07        15.72        23.84        14.70 
TCGA-E9-A5FL TCGA-E9-A5UO TCGA-E9-A6HE TCGA-EW-A1IX TCGA-EW-A1J1 TCGA-EW-A1J2 
        0.79        13.81        15.39        39.72        18.90        13.25 
TCGA-EW-A1J6 TCGA-EW-A1OW TCGA-EW-A1OY TCGA-EW-A1P3 TCGA-EW-A1P4 TCGA-EW-A1P5 
       28.77        22.82        29.85        52.96        29.82        23.11 
TCGA-EW-A1P6 TCGA-EW-A1P8 TCGA-EW-A1PA TCGA-EW-A1PC TCGA-EW-A1PH TCGA-EW-A2FS 
       18.48         7.86        18.90         6.15        19.96        52.73 
TCGA-EW-A2FV TCGA-EW-A3U0 TCGA-EW-A423 TCGA-GI-A2C8 TCGA-GM-A2DA TCGA-GM-A2DB 
       25.91        17.49        10.16         7.40       216.76        79.10 
TCGA-GM-A2DH TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A3NY TCGA-GM-A3XL TCGA-GM-A3XN 
       72.10        86.96       115.69        38.20        69.30        66.38 
TCGA-GM-A4E0 TCGA-HN-A2NL TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LD-A66U TCGA-LD-A7W6 
       72.03         2.60        11.84        11.57        21.24        13.28 
TCGA-LL-A442 TCGA-LL-A50Y TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LL-A6FP TCGA-LL-A6FQ 
       10.95        25.05        14.70        14.47        22.26         2.63 
TCGA-LL-A6FR TCGA-LL-A7SZ TCGA-LL-A7T0 TCGA-LQ-A4E4 TCGA-OL-A5D7 TCGA-OL-A5RV 
       16.08        14.70        12.36        27.91        58.52        34.92 
TCGA-OL-A5RW TCGA-OL-A5RZ TCGA-OL-A66K TCGA-OL-A66L TCGA-OL-A6VO TCGA-OL-A6VQ 
       36.36        22.32        41.92        42.77        28.21        19.73 
TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE TCGA-PL-A8LX TCGA-PL-A8LZ TCGA-S3-A6ZF 
       47.01        64.21        86.96         0.16         9.93        16.50 
TCGA-S3-A6ZG TCGA-S3-A6ZH TCGA-S3-AA10 TCGA-UL-AAZ6 TCGA-WT-AB44 TCGA-XX-A89A 
       13.12        16.93        15.39        17.03        29.03        16.04 
TCGA-Z7-A8R5 
      108.07 

$`DEL PEAK 40(22Q13.32) WILD-TYPE`
TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT0 TCGA-5L-AAT1 TCGA-5T-A9QA TCGA-A1-A0SB 
       40.14        11.44        48.56        48.36         9.96         8.52 
TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SH TCGA-A1-A0SI TCGA-A1-A0SM TCGA-A1-A0SP 
       43.43        48.10        47.24        20.88         7.96        19.20 
TCGA-A1-A0SQ TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04W TCGA-A2-A04X TCGA-A2-A0CK 
       18.21        73.84        87.25       101.98        55.43       136.73 
TCGA-A2-A0CO TCGA-A2-A0CT TCGA-A2-A0CX TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 
      114.81        75.25        56.81        34.55        33.76        61.58 
TCGA-A2-A0EM TCGA-A2-A0EP TCGA-A2-A0EQ TCGA-A2-A0ER TCGA-A2-A0ES TCGA-A2-A0EV 
      101.72       107.61        79.76        74.40        72.00        31.82 
TCGA-A2-A0EX TCGA-A2-A0EY TCGA-A2-A0ST TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0SY 
       24.72        63.29        99.19        27.12        44.88        44.28 
TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T5 TCGA-A2-A0YC TCGA-A2-A0YI 
       17.52        17.13         8.38        17.46        32.55        49.48 
TCGA-A2-A0YJ TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A0YM TCGA-A2-A1FV TCGA-A2-A1FX 
       18.61        19.33        48.46        31.73        23.47        60.72 
TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G1 TCGA-A2-A1G4 TCGA-A2-A1G6 TCGA-A2-A259 
       22.45        20.25        19.20        19.56        16.47        52.47 
TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD TCGA-A2-A3XT 
       18.15       105.34        10.59        20.88        39.65        83.01 
TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX TCGA-A2-A4RX TCGA-A2-A4S0 
       29.98        32.75        49.48        47.31        24.39        23.21 
TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CD TCGA-A7-A0D9 TCGA-A7-A0DA 
       26.96        21.14        21.90        38.30        37.45        35.67 
TCGA-A7-A0DC TCGA-A7-A13D TCGA-A7-A13F TCGA-A7-A13G TCGA-A7-A26F TCGA-A7-A26G 
       29.79        31.73        25.15        23.61        24.26        23.74 
TCGA-A7-A26H TCGA-A7-A2KD TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3RF 
       23.80        22.32        11.34        10.59        10.29        13.41 
TCGA-A7-A425 TCGA-A7-A4SA TCGA-A7-A4SE TCGA-A7-A5ZW TCGA-A7-A5ZX TCGA-A7-A6VV 
       14.70        14.93        21.17        10.72        11.05        10.29 
TCGA-A7-A6VX TCGA-A8-A06O TCGA-A8-A079 TCGA-A8-A07G TCGA-A8-A07L TCGA-A8-A07O 
       10.42        13.02         9.01        18.97        32.05         9.99 
TCGA-A8-A07P TCGA-A8-A07R TCGA-A8-A07S TCGA-A8-A07U TCGA-A8-A07Z TCGA-A8-A082 
       10.98         8.98         7.99        24.99        45.07        18.05 
TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08B TCGA-A8-A08C TCGA-A8-A08F TCGA-A8-A08L 
       13.02         0.99        38.01        28.96        33.01         9.99 
TCGA-A8-A08P TCGA-A8-A08R TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A091 TCGA-A8-A092 
       31.00         0.99       112.08        43.00        33.01        30.97 
TCGA-A8-A093 TCGA-A8-A095 TCGA-A8-A097 TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09I 
       17.95        41.98        12.00         9.99         9.99        45.07 
TCGA-A8-A09K TCGA-A8-A09Q TCGA-A8-A09V TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0AD 
       29.98        25.02        15.02        14.01        12.00        38.04 
TCGA-AC-A23C TCGA-AC-A23E TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM 
        0.95         2.37         5.72         1.48        38.53        99.35 
TCGA-AC-A2FB TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FO TCGA-AC-A2QI TCGA-AC-A2QJ 
       40.57        36.99        38.79        50.70         0.92         2.27 
TCGA-AC-A3OD TCGA-AC-A3TN TCGA-AC-A3W5 TCGA-AC-A3W6 TCGA-AC-A3YI TCGA-AC-A3YJ 
       14.83        14.99        16.57        19.79        23.24        24.79 
TCGA-AC-A62V TCGA-AC-A62X TCGA-AC-A6IW TCGA-AC-A7VC TCGA-AC-A8OQ TCGA-AC-A8OR 
       11.44        13.71        13.58         0.03         1.12         1.32 
TCGA-AC-A8OS TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A046 TCGA-AN-A04A TCGA-AN-A04C 
        2.30         0.33         0.33         0.33         2.96         1.78 
TCGA-AN-A04D TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0FJ TCGA-AN-A0FL 
        1.71         0.16         0.33         0.33         7.96         7.59 
TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FX TCGA-AN-A0XL 
        7.17         6.28         7.04         0.33         0.33         0.33 
TCGA-AN-A0XN TCGA-AN-A0XP TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03M TCGA-AO-A03O 
        0.33         0.30         5.33         5.59        61.35        81.63 
TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J2 TCGA-AO-A0J4 
       68.75        47.87        58.95        29.13        32.78        52.18 
TCGA-AO-A0J5 TCGA-AO-A0J6 TCGA-AO-A0JC TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JI 
       26.04        37.48        50.86        76.77        21.37        50.24 
TCGA-AO-A0JJ TCGA-AO-A0JL TCGA-AO-A0JM TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 
       62.04        55.33        71.80        99.25       108.72       106.78 
TCGA-AO-A129 TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A12H 
      108.03        98.27        64.04        48.36        41.62        28.37 
TCGA-AO-A1KO TCGA-AO-A1KR TCGA-AO-A1KT TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A04L 
       14.73        70.39        17.79        24.79        26.93       130.09 
TCGA-AQ-A0Y5 TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AR-A0TQ TCGA-AR-A0TV TCGA-AR-A0TX 
        5.65        15.62        32.52        73.64        42.35        64.83 
TCGA-AR-A0U1 TCGA-AR-A0U2 TCGA-AR-A0U4 TCGA-AR-A1AI TCGA-AR-A1AK TCGA-AR-A1AL 
      101.95        83.87        85.97        61.84        51.25        48.82 
TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AS TCGA-AR-A1AU TCGA-AR-A1AW TCGA-AR-A1AX 
       43.73        43.56        37.81        76.21        63.62        62.14 
TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24Q TCGA-AR-A24T TCGA-AR-A24U 
       94.22        96.89        78.51       104.28        76.01        53.36 
TCGA-AR-A24V TCGA-AR-A254 TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LL 
       85.35        72.76       143.21        20.25        62.86        66.15 
TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LQ TCGA-AR-A2LR TCGA-AR-A5QM TCGA-AR-A5QN 
       52.11        38.17        40.54        20.38        54.74        16.04 
TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0I9 TCGA-B6-A0IA 
       10.59        77.62       143.38       149.59        12.13       220.90 
TCGA-B6-A0IB TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IK 
      129.57        50.70        65.72       112.37       176.98        18.77 
TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IP TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RM 
      126.12        84.59       110.93       189.01       234.28        78.02 
TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RU TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT 
      140.48        89.46       131.21       157.41        97.48       188.68 
TCGA-B6-A0WV TCGA-B6-A0WY TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 
       79.63       113.79       129.57       129.70       186.48        28.27 
TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A2IU 
       68.94        58.88        43.59       101.52        73.51       170.17 
TCGA-B6-A401 TCGA-B6-A402 TCGA-BH-A0AU TCGA-BH-A0AV TCGA-BH-A0AW TCGA-BH-A0AZ 
       85.35        74.99        24.53        59.84        20.45        28.50 
TCGA-BH-A0B2 TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BG TCGA-BH-A0BM TCGA-BH-A0BO 
       40.83        32.02        18.21        24.85        61.68        35.67 
TCGA-BH-A0BP TCGA-BH-A0BQ TCGA-BH-A0BS TCGA-BH-A0BW TCGA-BH-A0C0 TCGA-BH-A0C1 
       48.69        27.19        53.95        11.67        41.75        44.02 
TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DO 
       45.83        31.17        23.44        22.13        13.91        17.26 
TCGA-BH-A0DP TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ 
       15.65         2.56        38.47        67.86        47.41        16.27 
TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EA TCGA-BH-A0EI 
       15.68        14.30        44.81        46.19        32.58        24.43 
TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H7 TCGA-BH-A0HI 
       15.16        37.78        35.51        24.56        23.08        20.38 
TCGA-BH-A0HK TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0HY 
        5.85         2.50        13.61        51.32        27.25        50.79 
TCGA-BH-A0W4 TCGA-BH-A18G TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18R 
       24.95         2.01        37.74        30.28        55.63        37.55 
TCGA-BH-A18S TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1EN TCGA-BH-A1EO TCGA-BH-A1EV 
       66.05        51.39        51.16        69.93        91.99        12.00 
TCGA-BH-A1EW TCGA-BH-A1F0 TCGA-BH-A1F2 TCGA-BH-A1F6 TCGA-BH-A1FB TCGA-BH-A1FE 
       55.69        25.81        31.53        97.48       120.62        74.73 
TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A201 
      122.89        36.92        63.35       144.59        72.07        28.14 
TCGA-BH-A202 TCGA-BH-A203 TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42U 
       26.14        38.60        10.65         6.44        20.12       109.28 
TCGA-BH-A42V TCGA-BH-A6R9 TCGA-BH-A8FY TCGA-BH-A8FZ TCGA-BH-A8G0 TCGA-BH-AB28 
        8.94         5.26         9.70        18.87        21.76         9.44 
TCGA-C8-A12L TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12V 
       11.93        11.77        12.66        11.77        12.66        12.66 
TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A12Z TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A134 
       12.66        12.66         0.39         3.16         2.24         1.12 
TCGA-C8-A135 TCGA-C8-A137 TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HJ 
        1.05         4.11        12.33        10.92        11.34         0.16 
TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A26X TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A275 
        0.30         0.23         0.36         8.28         9.67         0.03 
TCGA-C8-A278 TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-C8-A8HQ TCGA-C8-A8HR 
        9.50         0.99         0.03         0.23        12.49        13.41 
TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A147 TCGA-D8-A1J9 TCGA-D8-A1JA 
       13.25        20.58        13.97        19.20        17.49        16.50 
TCGA-D8-A1JC TCGA-D8-A1JE TCGA-D8-A1JF TCGA-D8-A1JH TCGA-D8-A1JI TCGA-D8-A1JK 
       15.78        18.90        12.03        14.01        18.97        20.12 
TCGA-D8-A1JM TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X6 TCGA-D8-A1X7 
       19.40        12.20        13.32        14.70        17.79        16.73 
TCGA-D8-A1X8 TCGA-D8-A1XC TCGA-D8-A1XF TCGA-D8-A1XG TCGA-D8-A1XJ TCGA-D8-A1XQ 
       25.74        12.39        15.22        14.73        21.83        16.41 
TCGA-D8-A1XS TCGA-D8-A1XV TCGA-D8-A1XW TCGA-D8-A1XY TCGA-D8-A1XZ TCGA-D8-A27E 
       16.31        15.16        12.66        16.54        15.32        17.42 
TCGA-D8-A27F TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27K TCGA-D8-A27M TCGA-D8-A27N 
       16.04        13.45        13.05         9.44        13.48         4.80 
TCGA-D8-A27P TCGA-D8-A27R TCGA-D8-A27V TCGA-D8-A27W TCGA-D8-A3Z6 TCGA-D8-A4Z1 
        0.76        10.09        12.53        12.26        18.51        21.67 
TCGA-D8-A73U TCGA-D8-A73W TCGA-E2-A108 TCGA-E2-A10B TCGA-E2-A10E TCGA-E2-A14N 
       16.18         8.02        27.52        37.51        28.44        47.15 
TCGA-E2-A14P TCGA-E2-A14R TCGA-E2-A14S TCGA-E2-A14U TCGA-E2-A14X TCGA-E2-A14Y 
       40.96        38.60        33.17        43.33        31.96        28.60 
TCGA-E2-A154 TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A15A TCGA-E2-A15D TCGA-E2-A15J 
       19.43        21.04        23.87        23.34        17.29        19.40 
TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A1B0 TCGA-E2-A1B4 
        9.04        20.58        17.06        14.07        53.62        33.01 
TCGA-E2-A1B6 TCGA-E2-A1BC TCGA-E2-A1IE TCGA-E2-A1IG TCGA-E2-A1IK TCGA-E2-A1IU 
       28.50        16.47        38.30        32.78        22.65        11.08 
TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L9 TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LG 
       54.18        27.42        19.66        24.59        40.47        18.87 
TCGA-E2-A1LH TCGA-E2-A1LL TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A570 TCGA-E9-A1N4 
      106.75        43.04         5.52        15.72        30.61        32.88 
TCGA-E9-A1N6 TCGA-E9-A1NC TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R5 TCGA-E9-A1R7 
       13.48        39.55        11.90        28.27         3.02        21.21 
TCGA-E9-A1RB TCGA-E9-A1RH TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A22B TCGA-E9-A22G 
       32.09        34.59        34.13        32.05        22.75        23.51 
TCGA-E9-A243 TCGA-E9-A295 TCGA-E9-A2JT TCGA-E9-A3Q9 TCGA-E9-A3QA TCGA-E9-A54X 
       17.06         0.72         0.76        18.41        30.18        12.33 
TCGA-E9-A5UP TCGA-EW-A1IW TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J3 TCGA-EW-A1J5 
       14.40        12.20         8.48        18.21        16.57        15.68 
TCGA-EW-A1OV TCGA-EW-A1OX TCGA-EW-A1OZ TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P7 
       25.94        29.95        40.41        41.13        39.78        30.08 
TCGA-EW-A1PB TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PF TCGA-EW-A1PG TCGA-EW-A2FR 
       19.99        13.94        10.52        14.43        34.55        55.00 
TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A424 TCGA-GI-A2C9 TCGA-GM-A2D9 TCGA-GM-A2DC 
       22.09        34.03        23.51       109.87        59.57        83.34 
TCGA-GM-A2DD TCGA-GM-A2DF TCGA-GM-A2DI TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A2DO 
       75.02        70.85        85.15       106.06       101.62        85.35 
TCGA-GM-A3NW TCGA-GM-A3XG TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2OB TCGA-LD-A74U 
      110.50        43.73        13.55        18.12        62.43        13.22 
TCGA-LD-A7W5 TCGA-LD-A9QF TCGA-LL-A440 TCGA-LL-A441 TCGA-LL-A5YL TCGA-LL-A5YM 
        7.10        10.62        24.95        11.44        17.06        15.32 
TCGA-LL-A5YP TCGA-LL-A73Y TCGA-LL-A73Z TCGA-LL-A740 TCGA-LL-A8F5 TCGA-LL-A9Q3 
       14.79        15.68         7.46        14.50        14.73        14.07 
TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RU 
       22.39         2.10        36.30        31.99        58.62        40.08 
TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5S0 TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J 
       28.87        24.72        20.38        26.70        23.47        65.62 
TCGA-OL-A66N TCGA-OL-A66O TCGA-OL-A66P TCGA-OL-A6VR TCGA-OL-A97C TCGA-PL-A8LY 
       26.04        17.36        14.07        40.11         8.91         0.26 
TCGA-S3-AA0Z TCGA-S3-AA11 TCGA-S3-AA12 TCGA-S3-AA14 TCGA-S3-AA15 TCGA-S3-AA17 
       16.80        13.84        15.35        14.96        13.84        13.94 
TCGA-UU-A93S TCGA-W8-A86G TCGA-WT-AB41 TCGA-XX-A899 TCGA-Z7-A8R6 
        3.81        11.41        52.96        15.35       107.05 

  DEL PEAK 40(22Q13.32) MUTATED DEL PEAK 40(22Q13.32) WILD-TYPE 
                           0.16                            0.03 
  DEL PEAK 40(22Q13.32) MUTATED DEL PEAK 40(22Q13.32) WILD-TYPE 
                         216.76                          234.28 
  DEL PEAK 40(22Q13.32) MUTATED DEL PEAK 40(22Q13.32) WILD-TYPE 
                          24.66                           24.43 
[1] "0.2 - 216.8 (24.7)" "0.0 - 234.3 (24.4)"
[1] "hr=" "1.1"
D69V2, continuous
                                 vv
clus                              STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  DEL PEAK 40(22Q13.32) MUTATED        38       36        2        0       156
  DEL PEAK 40(22Q13.32) WILD-TYPE      51       45        6        3       197
                                 vv
clus                              STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  DEL PEAK 40(22Q13.32) MUTATED         121         1         65         15
  DEL PEAK 40(22Q13.32) WILD-TYPE       124         1         85         14
                                 vv
clus                              STAGE IIIC STAGE IV STAGE TIS STAGE X
  DEL PEAK 40(22Q13.32) MUTATED           33        6         0       6
  DEL PEAK 40(22Q13.32) WILD-TYPE         30       14         1       7
D69V3, multiclass
            clus
vv           DEL PEAK 40(22Q13.32) MUTATED DEL PEAK 40(22Q13.32) WILD-TYPE
  STAGE I                               38                              51
  STAGE IA                              36                              45
  STAGE IB                               2                               6
  STAGE II                               0                               3
  STAGE IIA                            156                             197
  STAGE IIB                            121                             124
  STAGE III                              1                               1
  STAGE IIIA                            65                              85
  STAGE IIIB                            15                              14
  STAGE IIIC                            33                              30
  STAGE IV                               6                              14
  STAGE TIS                              0                               1
  STAGE X                                6                               7
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                               T1  T2  T3  T4
  DEL PEAK 40(22Q13.32) MUTATED   114 293  51  20
  DEL PEAK 40(22Q13.32) WILD-TYPE 158 323  79  20
D69V4, multiclass
    clus
vv   DEL PEAK 40(22Q13.32) MUTATED DEL PEAK 40(22Q13.32) WILD-TYPE
  T1                           114                             158
  T2                           293                             323
  T3                            51                              79
  T4                            20                              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                               N0  N1  N2  N3
  DEL PEAK 40(22Q13.32) MUTATED   226 159  52  39
  DEL PEAK 40(22Q13.32) WILD-TYPE 275 191  65  36
D69V5, multiclass
    clus
vv   DEL PEAK 40(22Q13.32) MUTATED DEL PEAK 40(22Q13.32) WILD-TYPE
  N0                           226                             275
  N1                           159                             191
  N2                            52                              65
  N3                            39                              36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D69V6, binary
                                 cls
clus                                0   1
  DEL PEAK 40(22Q13.32) MUTATED   402   7
  DEL PEAK 40(22Q13.32) WILD-TYPE 477  14
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 40(22Q13.32) MUTATED    402    7
  DEL PEAK 40(22Q13.32) WILD-TYPE  477   14
   clus
vv  DEL PEAK 40(22Q13.32) MUTATED DEL PEAK 40(22Q13.32) WILD-TYPE
  0                           402                             477
  1                             7                              14
[1] 2 2
[1] FALSE
D69V7, binary
                                 cls
clus                                0   1
  DEL PEAK 40(22Q13.32) MUTATED   474   6
  DEL PEAK 40(22Q13.32) WILD-TYPE 577   5
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 40(22Q13.32) MUTATED    474    6
  DEL PEAK 40(22Q13.32) WILD-TYPE  577    5
        clus
vv       DEL PEAK 40(22Q13.32) MUTATED DEL PEAK 40(22Q13.32) WILD-TYPE
  FEMALE                           474                             577
  MALE                               6                               5
[1] 2 2
[1] FALSE
                                 vv
clus                              INFILTRATING CARCINOMA NOS
  DEL PEAK 40(22Q13.32) MUTATED                            1
  DEL PEAK 40(22Q13.32) WILD-TYPE                          0
                                 vv
clus                              INFILTRATING DUCTAL CARCINOMA
  DEL PEAK 40(22Q13.32) MUTATED                             353
  DEL PEAK 40(22Q13.32) WILD-TYPE                           410
                                 vv
clus                              INFILTRATING LOBULAR CARCINOMA
  DEL PEAK 40(22Q13.32) MUTATED                               87
  DEL PEAK 40(22Q13.32) WILD-TYPE                            105
                                 vv
clus                              MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  DEL PEAK 40(22Q13.32) MUTATED                     3                     2
  DEL PEAK 40(22Q13.32) WILD-TYPE                   3                     2
                                 vv
clus                              MIXED HISTOLOGY (PLEASE SPECIFY)
  DEL PEAK 40(22Q13.32) MUTATED                                 18
  DEL PEAK 40(22Q13.32) WILD-TYPE                               12
                                 vv
clus                              MUCINOUS CARCINOMA OTHER  SPECIFY
  DEL PEAK 40(22Q13.32) MUTATED                    1             14
  DEL PEAK 40(22Q13.32) WILD-TYPE                 16             34
D69V8, multiclass
                                  clus
vv                                 DEL PEAK 40(22Q13.32) MUTATED
  INFILTRATING CARCINOMA NOS                                   1
  INFILTRATING DUCTAL CARCINOMA                              353
  INFILTRATING LOBULAR CARCINOMA                              87
  MEDULLARY CARCINOMA                                          3
  METAPLASTIC CARCINOMA                                        2
  MIXED HISTOLOGY (PLEASE SPECIFY)                            18
  MUCINOUS CARCINOMA                                           1
  OTHER  SPECIFY                                              14
                                  clus
vv                                 DEL PEAK 40(22Q13.32) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                     0
  INFILTRATING DUCTAL CARCINOMA                                410
  INFILTRATING LOBULAR CARCINOMA                               105
  MEDULLARY CARCINOMA                                            3
  METAPLASTIC CARCINOMA                                          2
  MIXED HISTOLOGY (PLEASE SPECIFY)                              12
  MUCINOUS CARCINOMA                                            16
  OTHER  SPECIFY                                                34
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D69V9, binary
                                 cls
clus                                0   1
  DEL PEAK 40(22Q13.32) MUTATED   151 329
  DEL PEAK 40(22Q13.32) WILD-TYPE 137 445
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 40(22Q13.32) MUTATED    151  329
  DEL PEAK 40(22Q13.32) WILD-TYPE  137  445
     clus
vv    DEL PEAK 40(22Q13.32) MUTATED DEL PEAK 40(22Q13.32) WILD-TYPE
  NO                            151                             137
  YES                           329                             445
[1] 2 2
[1] FALSE
D69V10, continuous
                                 vv
clus                              AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 40(22Q13.32) MUTATED                                  0    23
  DEL PEAK 40(22Q13.32) WILD-TYPE                                1    37
                                 vv
clus                              BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 40(22Q13.32) MUTATED                          78   337
  DEL PEAK 40(22Q13.32) WILD-TYPE                        92   399
D69V11, multiclass
                                  clus
vv                                 DEL PEAK 40(22Q13.32) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                             0
  ASIAN                                                       23
  BLACK OR AFRICAN AMERICAN                                   78
  WHITE                                                      337
                                  clus
vv                                 DEL PEAK 40(22Q13.32) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                               1
  ASIAN                                                         37
  BLACK OR AFRICAN AMERICAN                                     92
  WHITE                                                        399
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D69V12, binary
                                 cls
clus                                0   1
  DEL PEAK 40(22Q13.32) MUTATED    15 386
  DEL PEAK 40(22Q13.32) WILD-TYPE  23 472
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 40(22Q13.32) MUTATED     15  386
  DEL PEAK 40(22Q13.32) WILD-TYPE   23  472
                        clus
vv                       DEL PEAK 40(22Q13.32) MUTATED
  HISPANIC OR LATINO                                15
  NOT HISPANIC OR LATINO                           386
                        clus
vv                       DEL PEAK 40(22Q13.32) WILD-TYPE
  HISPANIC OR LATINO                                  23
  NOT HISPANIC OR LATINO                             472
[1] 2 2
[1] FALSE
