Classifier directory BuiltClassifiers created under CHASM/BuiltClassifiers
/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_CHASM/broadinstitute.org/cancer.genome.analysis/10194/33/CHASM/snvGetTranscriptList
Generating set of 5000 Passenger Mutations
Passenger generation complete
Generating set of 5000 Null Mutations
Null generation complete
Retrieving features for training set from SNVBox
Data retrieval took 654.487246037s

Training set features stored in Train.arff
Retrieving features for null set from SNVBox
Data retrieval took 331.076191902s

Null set features stored in Null.arff
Training Random Forest Classifier
Trainset classification error is  13.04% of    9948 (kappa: 0.7380 )



Classisfier training time: 623.7288239

Classifier training complete
/xchip/cga/gdac-prod/tcga-gdac/jobResults/PREPROCESSCHASM/BRCA-TP/15165592/mutationslist.arff
Data retrieval took 3050.22845602s

Features retrieved for input mutations as .arff file
Output file generated
/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CHASM/BRCA-TP/15230825
/xchip/cga/gdac-prod/tcga-gdac/jobResults/PREPROCESSCHASM/BRCA-TP/15165592
