[1] "ofn"        "-oTBRCA-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/BRCA-TP/15246568/BRCA-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/BRCA-TP/15086288/transformed.cor.cli.txt"

nPatients in clinical file=1098, in cluster file=1080, common to both=1080
[1]   69 1080
[1] "AMP PEAK  1(1P22.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE 
                          250                           830 
  AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE 
                          250                           830 
[1] "AMP PEAK  2(1Q21.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE 
                          781                           299 
  AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE 
                          781                           299 
[1] "AMP PEAK  3(1Q44) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE 
                        789                         291 
  AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE 
                        789                         291 
[1] "AMP PEAK  4(3P25.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  4(3P25.1) MUTATED AMP PEAK  4(3P25.1) WILD-TYPE 
                          198                           882 
  AMP PEAK  4(3P25.1) MUTATED AMP PEAK  4(3P25.1) WILD-TYPE 
                          198                           882 
[1] "AMP PEAK  5(3Q26.32) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  5(3Q26.32) MUTATED AMP PEAK  5(3Q26.32) WILD-TYPE 
                           340                            740 
  AMP PEAK  5(3Q26.32) MUTATED AMP PEAK  5(3Q26.32) WILD-TYPE 
                           340                            740 
[1] "AMP PEAK  6(4Q13.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  6(4Q13.3) MUTATED AMP PEAK  6(4Q13.3) WILD-TYPE 
                          163                           917 
  AMP PEAK  6(4Q13.3) MUTATED AMP PEAK  6(4Q13.3) WILD-TYPE 
                          163                           917 
[1] "AMP PEAK  7(5P15.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE 
                           394                            686 
  AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE 
                           394                            686 
[1] "AMP PEAK  8(6P23) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  8(6P23) MUTATED AMP PEAK  8(6P23) WILD-TYPE 
                        299                         781 
  AMP PEAK  8(6P23) MUTATED AMP PEAK  8(6P23) WILD-TYPE 
                        299                         781 
[1] "AMP PEAK  9(6Q21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE 
                        202                         878 
  AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE 
                        202                         878 
[1] "AMP PEAK 10(8P11.23) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 10(8P11.23) MUTATED AMP PEAK 10(8P11.23) WILD-TYPE 
                           412                            668 
  AMP PEAK 10(8P11.23) MUTATED AMP PEAK 10(8P11.23) WILD-TYPE 
                           412                            668 
[1] "AMP PEAK 11(8P11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 11(8P11.21) MUTATED AMP PEAK 11(8P11.21) WILD-TYPE 
                           421                            659 
  AMP PEAK 11(8P11.21) MUTATED AMP PEAK 11(8P11.21) WILD-TYPE 
                           421                            659 
[1] "AMP PEAK 12(8Q24.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE 
                           678                            402 
  AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE 
                           678                            402 
[1] "AMP PEAK 13(10P15.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 13(10P15.1) MUTATED AMP PEAK 13(10P15.1) WILD-TYPE 
                           304                            776 
  AMP PEAK 13(10P15.1) MUTATED AMP PEAK 13(10P15.1) WILD-TYPE 
                           304                            776 
[1] "AMP PEAK 14(10Q22.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 14(10Q22.3) MUTATED AMP PEAK 14(10Q22.3) WILD-TYPE 
                           150                            930 
  AMP PEAK 14(10Q22.3) MUTATED AMP PEAK 14(10Q22.3) WILD-TYPE 
                           150                            930 
[1] "AMP PEAK 15(11P13) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 15(11P13) MUTATED AMP PEAK 15(11P13) WILD-TYPE 
                         223                          857 
  AMP PEAK 15(11P13) MUTATED AMP PEAK 15(11P13) WILD-TYPE 
                         223                          857 
[1] "AMP PEAK 16(11Q13.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE 
                           398                            682 
  AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE 
                           398                            682 
[1] "AMP PEAK 17(11Q14.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 17(11Q14.1) MUTATED AMP PEAK 17(11Q14.1) WILD-TYPE 
                           267                            813 
  AMP PEAK 17(11Q14.1) MUTATED AMP PEAK 17(11Q14.1) WILD-TYPE 
                           267                            813 
[1] "AMP PEAK 18(12P13.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 18(12P13.33) MUTATED AMP PEAK 18(12P13.33) WILD-TYPE 
                            282                             798 
  AMP PEAK 18(12P13.33) MUTATED AMP PEAK 18(12P13.33) WILD-TYPE 
                            282                             798 
[1] "AMP PEAK 19(12Q15) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE 
                         276                          804 
  AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE 
                         276                          804 
[1] "AMP PEAK 20(13Q34) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 20(13Q34) MUTATED AMP PEAK 20(13Q34) WILD-TYPE 
                         179                          901 
  AMP PEAK 20(13Q34) MUTATED AMP PEAK 20(13Q34) WILD-TYPE 
                         179                          901 
[1] "AMP PEAK 21(14Q21.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 21(14Q21.1) MUTATED AMP PEAK 21(14Q21.1) WILD-TYPE 
                           220                            860 
  AMP PEAK 21(14Q21.1) MUTATED AMP PEAK 21(14Q21.1) WILD-TYPE 
                           220                            860 
[1] "AMP PEAK 22(15Q26.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE 
                           194                            886 
  AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE 
                           194                            886 
[1] "AMP PEAK 23(17P11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 23(17P11.2) MUTATED AMP PEAK 23(17P11.2) WILD-TYPE 
                           147                            933 
  AMP PEAK 23(17P11.2) MUTATED AMP PEAK 23(17P11.2) WILD-TYPE 
                           147                            933 
[1] "AMP PEAK 24(17Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 24(17Q12) MUTATED AMP PEAK 24(17Q12) WILD-TYPE 
                         333                          747 
  AMP PEAK 24(17Q12) MUTATED AMP PEAK 24(17Q12) WILD-TYPE 
                         333                          747 
[1] "AMP PEAK 25(17Q23.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 25(17Q23.1) MUTATED AMP PEAK 25(17Q23.1) WILD-TYPE 
                           426                            654 
  AMP PEAK 25(17Q23.1) MUTATED AMP PEAK 25(17Q23.1) WILD-TYPE 
                           426                            654 
[1] "AMP PEAK 26(19P13.12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 26(19P13.12) MUTATED AMP PEAK 26(19P13.12) WILD-TYPE 
                            230                             850 
  AMP PEAK 26(19P13.12) MUTATED AMP PEAK 26(19P13.12) WILD-TYPE 
                            230                             850 
[1] "AMP PEAK 27(19Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 27(19Q12) MUTATED AMP PEAK 27(19Q12) WILD-TYPE 
                         284                          796 
  AMP PEAK 27(19Q12) MUTATED AMP PEAK 27(19Q12) WILD-TYPE 
                         284                          796 
[1] "AMP PEAK 28(19Q13.42) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 28(19Q13.42) MUTATED AMP PEAK 28(19Q13.42) WILD-TYPE 
                            276                             804 
  AMP PEAK 28(19Q13.42) MUTATED AMP PEAK 28(19Q13.42) WILD-TYPE 
                            276                             804 
[1] "AMP PEAK 29(20Q13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 29(20Q13.2) MUTATED AMP PEAK 29(20Q13.2) WILD-TYPE 
                           548                            532 
  AMP PEAK 29(20Q13.2) MUTATED AMP PEAK 29(20Q13.2) WILD-TYPE 
                           548                            532 
[1] "DEL PEAK  1(1P36.13) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE 
                           452                            628 
  DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE 
                           452                            628 
[1] "DEL PEAK  2(1P22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE 
                          362                           718 
  DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE 
                          362                           718 
[1] "DEL PEAK  3(2Q37.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE 
                          317                           763 
  DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE 
                          317                           763 
[1] "DEL PEAK  4(3P21.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(3P21.31) MUTATED DEL PEAK  4(3P21.31) WILD-TYPE 
                           347                            733 
  DEL PEAK  4(3P21.31) MUTATED DEL PEAK  4(3P21.31) WILD-TYPE 
                           347                            733 
[1] "DEL PEAK  5(4P16.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(4P16.3) MUTATED DEL PEAK  5(4P16.3) WILD-TYPE 
                          339                           741 
  DEL PEAK  5(4P16.3) MUTATED DEL PEAK  5(4P16.3) WILD-TYPE 
                          339                           741 
[1] "DEL PEAK  6(4Q35.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(4Q35.1) MUTATED DEL PEAK  6(4Q35.1) WILD-TYPE 
                          345                           735 
  DEL PEAK  6(4Q35.1) MUTATED DEL PEAK  6(4Q35.1) WILD-TYPE 
                          345                           735 
[1] "DEL PEAK  7(5Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(5Q11.2) MUTATED DEL PEAK  7(5Q11.2) WILD-TYPE 
                          280                           800 
  DEL PEAK  7(5Q11.2) MUTATED DEL PEAK  7(5Q11.2) WILD-TYPE 
                          280                           800 
[1] "DEL PEAK  8(5Q21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(5Q21.3) MUTATED DEL PEAK  8(5Q21.3) WILD-TYPE 
                          272                           808 
  DEL PEAK  8(5Q21.3) MUTATED DEL PEAK  8(5Q21.3) WILD-TYPE 
                          272                           808 
[1] "DEL PEAK  9(6P25.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(6P25.3) MUTATED DEL PEAK  9(6P25.3) WILD-TYPE 
                          204                           876 
  DEL PEAK  9(6P25.3) MUTATED DEL PEAK  9(6P25.3) WILD-TYPE 
                          204                           876 
[1] "DEL PEAK 10(6Q15) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(6Q15) MUTATED DEL PEAK 10(6Q15) WILD-TYPE 
                        358                         722 
  DEL PEAK 10(6Q15) MUTATED DEL PEAK 10(6Q15) WILD-TYPE 
                        358                         722 
[1] "DEL PEAK 11(6Q27) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE 
                        375                         705 
  DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE 
                        375                         705 
[1] "DEL PEAK 12(7P22.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(7P22.3) MUTATED DEL PEAK 12(7P22.3) WILD-TYPE 
                          137                           943 
  DEL PEAK 12(7P22.3) MUTATED DEL PEAK 12(7P22.3) WILD-TYPE 
                          137                           943 
[1] "DEL PEAK 13(7Q36.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE 
                          200                           880 
  DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE 
                          200                           880 
[1] "DEL PEAK 14(8P23.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE 
                          558                           522 
  DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE 
                          558                           522 
[1] "DEL PEAK 15(8P11.21) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(8P11.21) MUTATED DEL PEAK 15(8P11.21) WILD-TYPE 
                           200                            880 
  DEL PEAK 15(8P11.21) MUTATED DEL PEAK 15(8P11.21) WILD-TYPE 
                           200                            880 
[1] "DEL PEAK 16(9P23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE 
                        325                         755 
  DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE 
                        325                         755 
[1] "DEL PEAK 17(9P21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE 
                          364                           716 
  DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE 
                          364                           716 
[1] "DEL PEAK 18(9Q21.11) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(9Q21.11) MUTATED DEL PEAK 18(9Q21.11) WILD-TYPE 
                           294                            786 
  DEL PEAK 18(9Q21.11) MUTATED DEL PEAK 18(9Q21.11) WILD-TYPE 
                           294                            786 
[1] "DEL PEAK 19(9Q34.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 19(9Q34.2) MUTATED DEL PEAK 19(9Q34.2) WILD-TYPE 
                          297                           783 
  DEL PEAK 19(9Q34.2) MUTATED DEL PEAK 19(9Q34.2) WILD-TYPE 
                          297                           783 
[1] "DEL PEAK 20(10Q23.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 20(10Q23.31) MUTATED DEL PEAK 20(10Q23.31) WILD-TYPE 
                            320                             760 
  DEL PEAK 20(10Q23.31) MUTATED DEL PEAK 20(10Q23.31) WILD-TYPE 
                            320                             760 
[1] "DEL PEAK 21(10Q26.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE 
                           319                            761 
  DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE 
                           319                            761 
[1] "DEL PEAK 22(11P15.5) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE 
                           309                            771 
  DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE 
                           309                            771 
[1] "DEL PEAK 23(11Q13.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 23(11Q13.1) MUTATED DEL PEAK 23(11Q13.1) WILD-TYPE 
                           241                            839 
  DEL PEAK 23(11Q13.1) MUTATED DEL PEAK 23(11Q13.1) WILD-TYPE 
                           241                            839 
[1] "DEL PEAK 24(11Q23.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 24(11Q23.3) MUTATED DEL PEAK 24(11Q23.3) WILD-TYPE 
                           547                            533 
  DEL PEAK 24(11Q23.3) MUTATED DEL PEAK 24(11Q23.3) WILD-TYPE 
                           547                            533 
[1] "DEL PEAK 25(11Q25) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 25(11Q25) MUTATED DEL PEAK 25(11Q25) WILD-TYPE 
                         513                          567 
  DEL PEAK 25(11Q25) MUTATED DEL PEAK 25(11Q25) WILD-TYPE 
                         513                          567 
[1] "DEL PEAK 26(12P13.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 26(12P13.1) MUTATED DEL PEAK 26(12P13.1) WILD-TYPE 
                           188                            892 
  DEL PEAK 26(12P13.1) MUTATED DEL PEAK 26(12P13.1) WILD-TYPE 
                           188                            892 
[1] "DEL PEAK 27(12Q23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE 
                           201                            879 
  DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE 
                           201                            879 
[1] "DEL PEAK 28(12Q24.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 28(12Q24.31) MUTATED DEL PEAK 28(12Q24.31) WILD-TYPE 
                            211                             869 
  DEL PEAK 28(12Q24.31) MUTATED DEL PEAK 28(12Q24.31) WILD-TYPE 
                            211                             869 
[1] "DEL PEAK 29(13Q14.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 29(13Q14.2) MUTATED DEL PEAK 29(13Q14.2) WILD-TYPE 
                           495                            585 
  DEL PEAK 29(13Q14.2) MUTATED DEL PEAK 29(13Q14.2) WILD-TYPE 
                           495                            585 
[1] "DEL PEAK 30(14Q24.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 30(14Q24.1) MUTATED DEL PEAK 30(14Q24.1) WILD-TYPE 
                           353                            727 
  DEL PEAK 30(14Q24.1) MUTATED DEL PEAK 30(14Q24.1) WILD-TYPE 
                           353                            727 
[1] "DEL PEAK 31(15Q13.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 31(15Q13.1) MUTATED DEL PEAK 31(15Q13.1) WILD-TYPE 
                           375                            705 
  DEL PEAK 31(15Q13.1) MUTATED DEL PEAK 31(15Q13.1) WILD-TYPE 
                           375                            705 
[1] "DEL PEAK 32(16Q24.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 32(16Q24.3) MUTATED DEL PEAK 32(16Q24.3) WILD-TYPE 
                           693                            387 
  DEL PEAK 32(16Q24.3) MUTATED DEL PEAK 32(16Q24.3) WILD-TYPE 
                           693                            387 
[1] "DEL PEAK 33(17P12) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 33(17P12) MUTATED DEL PEAK 33(17P12) WILD-TYPE 
                         650                          430 
  DEL PEAK 33(17P12) MUTATED DEL PEAK 33(17P12) WILD-TYPE 
                         650                          430 
[1] "DEL PEAK 34(17Q21.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 34(17Q21.31) MUTATED DEL PEAK 34(17Q21.31) WILD-TYPE 
                            371                             709 
  DEL PEAK 34(17Q21.31) MUTATED DEL PEAK 34(17Q21.31) WILD-TYPE 
                            371                             709 
[1] "DEL PEAK 35(18Q23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 35(18Q23) MUTATED DEL PEAK 35(18Q23) WILD-TYPE 
                         354                          726 
  DEL PEAK 35(18Q23) MUTATED DEL PEAK 35(18Q23) WILD-TYPE 
                         354                          726 
[1] "DEL PEAK 36(19P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 36(19P13.3) MUTATED DEL PEAK 36(19P13.3) WILD-TYPE 
                           363                            717 
  DEL PEAK 36(19P13.3) MUTATED DEL PEAK 36(19P13.3) WILD-TYPE 
                           363                            717 
[1] "DEL PEAK 37(19Q13.32) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 37(19Q13.32) MUTATED DEL PEAK 37(19Q13.32) WILD-TYPE 
                            216                             864 
  DEL PEAK 37(19Q13.32) MUTATED DEL PEAK 37(19Q13.32) WILD-TYPE 
                            216                             864 
[1] "DEL PEAK 38(20P13) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 38(20P13) MUTATED DEL PEAK 38(20P13) WILD-TYPE 
                         160                          920 
  DEL PEAK 38(20P13) MUTATED DEL PEAK 38(20P13) WILD-TYPE 
                         160                          920 
[1] "DEL PEAK 39(21Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 39(21Q11.2) MUTATED DEL PEAK 39(21Q11.2) WILD-TYPE 
                           217                            863 
  DEL PEAK 39(21Q11.2) MUTATED DEL PEAK 39(21Q11.2) WILD-TYPE 
                           217                            863 
[1] "DEL PEAK 40(22Q13.32) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 40(22Q13.32) MUTATED DEL PEAK 40(22Q13.32) WILD-TYPE 
                            492                             588 
  DEL PEAK 40(22Q13.32) MUTATED DEL PEAK 40(22Q13.32) WILD-TYPE 
                            492                             588 
[1] "data2feature, selection=ALL"
 [1] "MRNA_CNMF"                   "MRNA_CHIERARCHICAL"         
 [3] "CN_CNMF"                     "METHLYATION_CNMF"           
 [5] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [7] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [9] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[11] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 12 rows and 1080 columns.

Variable 1:'MRNA_CNMF':	nDistinctValues=8,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'MRNA_CHIERARCHICAL':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'CN_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'METHLYATION_CNMF':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'RPPA_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'RPPA_CHIERARCHICAL':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MRNASEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 11:'MIRSEQ_MATURE_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "## **** detect survival parameters (defined in index such as ind_OS, ind_MFS, ind_RFS, ind_RFS, ind_BCR and ind_d2ssd) *** ##"
[1] "detected survival parameters using [ind_OS, overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_OS, curated_overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_TCGAOS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survivial parameters using [ind_MFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_RFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_BCR]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_Progression]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [index_additional_survival_time]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using condition: [is.null(surv.mat)&&(selection=='SURV')]"
[1] "survival parameters accumulated so far"
NULL
[1] "************ conversion from categorical data to rank data ********** "
[1] "****** SUMMARY ***** "
Output Data has 1080 columns, 0 survival variables, and 12 non-survival variables.
[1] "* survival variables: "
NULL
[1] "* non-survival variables: "
 [1] "MRNA_CNMF"                   "MRNA_CHIERARCHICAL"         
 [3] "CN_CNMF"                     "METHLYATION_CNMF"           
 [5] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [7] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [9] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[11] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
MRNA_CNMF, nv=8, binary=FALSE, numeric=FALSE
MRNA_CHIERARCHICAL, nv=5, binary=FALSE, numeric=FALSE
CN_CNMF, nv=5, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=6, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=6, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=6, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=6, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=5, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE

Clustering(1) Variable = AMP PEAK  1(1P22.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1P22.3) MUTATED        4      3     14     51     24     15
  AMP PEAK  1(1P22.3) WILD-TYPE     17     33    105     45     85     57
                               vv
clus                            CLUS_7 CLUS_8
  AMP PEAK  1(1P22.3) MUTATED        2      2
  AMP PEAK  1(1P22.3) WILD-TYPE     18     38
D1V1, multiclass
        clus
vv       AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE
  CLUS_1                           4                            17
  CLUS_2                           3                            33
  CLUS_3                          14                           105
  CLUS_4                          51                            45
  CLUS_5                          24                            85
  CLUS_6                          15                            57
  CLUS_7                           2                            18
  CLUS_8                           2                            38
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1P22.3) MUTATED       14     19     24     47     11
  AMP PEAK  1(1P22.3) WILD-TYPE     87    133     90     41     47
D1V2, multiclass
        clus
vv       AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE
  CLUS_1                          14                            87
  CLUS_2                          19                           133
  CLUS_3                          24                            90
  CLUS_4                          47                            41
  CLUS_5                          11                            47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1P22.3) MUTATED       42     52     32    110     14
  AMP PEAK  1(1P22.3) WILD-TYPE    233    355     66    147     29
D1V3, multiclass
        clus
vv       AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE
  CLUS_1                          42                           233
  CLUS_2                          52                           355
  CLUS_3                          32                            66
  CLUS_4                         110                           147
  CLUS_5                          14                            29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1P22.3) MUTATED       20     26     28     27     69      5
  AMP PEAK  1(1P22.3) WILD-TYPE    133     87    149    104     59     50
D1V4, multiclass
        clus
vv       AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE
  CLUS_1                          20                           133
  CLUS_2                          26                            87
  CLUS_3                          28                           149
  CLUS_4                          27                           104
  CLUS_5                          69                            59
  CLUS_6                           5                            50
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P22.3) MUTATED       51     28     17
  AMP PEAK  1(1P22.3) WILD-TYPE     97    106    100
D1V5, multiclass
        clus
vv       AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE
  CLUS_1                          51                            97
  CLUS_2                          28                           106
  CLUS_3                          17                           100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1P22.3) MUTATED       15      4     45      9     18      5
  AMP PEAK  1(1P22.3) WILD-TYPE     49     42     45     43     98     26
D1V6, multiclass
        clus
vv       AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE
  CLUS_1                          15                            49
  CLUS_2                           4                            42
  CLUS_3                          45                            45
  CLUS_4                           9                            43
  CLUS_5                          18                            98
  CLUS_6                           5                            26
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P22.3) MUTATED      100    129     20
  AMP PEAK  1(1P22.3) WILD-TYPE    459    175    192
D1V7, multiclass
        clus
vv       AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE
  CLUS_1                         100                           459
  CLUS_2                         129                           175
  CLUS_3                          20                           192
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1P22.3) MUTATED       48     35      7     44     99     16
  AMP PEAK  1(1P22.3) WILD-TYPE    241    128     83    246     84     44
D1V8, multiclass
        clus
vv       AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE
  CLUS_1                          48                           241
  CLUS_2                          35                           128
  CLUS_3                           7                            83
  CLUS_4                          44                           246
  CLUS_5                          99                            84
  CLUS_6                          16                            44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1P22.3) MUTATED      126     32     51     38
  AMP PEAK  1(1P22.3) WILD-TYPE    179    180    218    237
D1V9, multiclass
        clus
vv       AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE
  CLUS_1                         126                           179
  CLUS_2                          32                           180
  CLUS_3                          51                           218
  CLUS_4                          38                           237
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1P22.3) MUTATED       53     41     39     25      9     80
  AMP PEAK  1(1P22.3) WILD-TYPE    241    111    206    115     87     54
D1V10, multiclass
        clus
vv       AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE
  CLUS_1                          53                           241
  CLUS_2                          41                           111
  CLUS_3                          39                           206
  CLUS_4                          25                           115
  CLUS_5                           9                            87
  CLUS_6                          80                            54
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1P22.3) MUTATED       29     73     13     12     30
  AMP PEAK  1(1P22.3) WILD-TYPE    151     66     86     99    103
D1V11, multiclass
        clus
vv       AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE
  CLUS_1                          29                           151
  CLUS_2                          73                            66
  CLUS_3                          13                            86
  CLUS_4                          12                            99
  CLUS_5                          30                           103
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P22.3) MUTATED       97     48     12
  AMP PEAK  1(1P22.3) WILD-TYPE    208    199     98
D1V12, multiclass
        clus
vv       AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE
  CLUS_1                          97                           208
  CLUS_2                          48                           199
  CLUS_3                          12                            98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = AMP PEAK  2(1Q21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(1Q21.3) MUTATED       16     19     75     88     88     54
  AMP PEAK  2(1Q21.3) WILD-TYPE      5     17     44      8     21     18
                               vv
clus                            CLUS_7 CLUS_8
  AMP PEAK  2(1Q21.3) MUTATED       10     29
  AMP PEAK  2(1Q21.3) WILD-TYPE     10     11
D2V1, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          16                             5
  CLUS_2                          19                            17
  CLUS_3                          75                            44
  CLUS_4                          88                             8
  CLUS_5                          88                            21
  CLUS_6                          54                            18
  CLUS_7                          10                            10
  CLUS_8                          29                            11
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(1Q21.3) MUTATED       62    102     89     81     45
  AMP PEAK  2(1Q21.3) WILD-TYPE     39     50     25      7     13
D2V2, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          62                            39
  CLUS_2                         102                            50
  CLUS_3                          89                            25
  CLUS_4                          81                             7
  CLUS_5                          45                            13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(1Q21.3) MUTATED      200    249     96    204     32
  AMP PEAK  2(1Q21.3) WILD-TYPE     75    158      2     53     11
D2V3, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                         200                            75
  CLUS_2                         249                           158
  CLUS_3                          96                             2
  CLUS_4                         204                            53
  CLUS_5                          32                            11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(1Q21.3) MUTATED       97     91    139     76    108     34
  AMP PEAK  2(1Q21.3) WILD-TYPE     56     22     38     55     20     21
D2V4, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          97                            56
  CLUS_2                          91                            22
  CLUS_3                         139                            38
  CLUS_4                          76                            55
  CLUS_5                         108                            20
  CLUS_6                          34                            21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q21.3) MUTATED      119     97     79
  AMP PEAK  2(1Q21.3) WILD-TYPE     29     37     38
D2V5, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                         119                            29
  CLUS_2                          97                            37
  CLUS_3                          79                            38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(1Q21.3) MUTATED       49     29     77     35     80     25
  AMP PEAK  2(1Q21.3) WILD-TYPE     15     17     13     17     36      6
D2V6, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          49                            15
  CLUS_2                          29                            17
  CLUS_3                          77                            13
  CLUS_4                          35                            17
  CLUS_5                          80                            36
  CLUS_6                          25                             6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q21.3) MUTATED      398    242    138
  AMP PEAK  2(1Q21.3) WILD-TYPE    161     62     74
D2V7, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                         398                           161
  CLUS_2                         242                            62
  CLUS_3                         138                            74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(1Q21.3) MUTATED      193    130     53    208    159     35
  AMP PEAK  2(1Q21.3) WILD-TYPE     96     33     37     82     24     25
D2V8, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                         193                            96
  CLUS_2                         130                            33
  CLUS_3                          53                            37
  CLUS_4                         208                            82
  CLUS_5                         159                            24
  CLUS_6                          35                            25
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q21.3) MUTATED      244    137    198    185
  AMP PEAK  2(1Q21.3) WILD-TYPE     61     75     71     90
D2V9, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                         244                            61
  CLUS_2                         137                            75
  CLUS_3                         198                            71
  CLUS_4                         185                            90
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(1Q21.3) MUTATED      211    107    159    112     54    121
  AMP PEAK  2(1Q21.3) WILD-TYPE     83     45     86     28     42     13
D2V10, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                         211                            83
  CLUS_2                         107                            45
  CLUS_3                         159                            86
  CLUS_4                         112                            28
  CLUS_5                          54                            42
  CLUS_6                         121                            13
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(1Q21.3) MUTATED      125    114     70     64     90
  AMP PEAK  2(1Q21.3) WILD-TYPE     55     25     29     47     43
D2V11, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                         125                            55
  CLUS_2                         114                            25
  CLUS_3                          70                            29
  CLUS_4                          64                            47
  CLUS_5                          90                            43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q21.3) MUTATED      223    171     69
  AMP PEAK  2(1Q21.3) WILD-TYPE     82     76     41
D2V12, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                         223                            82
  CLUS_2                         171                            76
  CLUS_3                          69                            41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = AMP PEAK  3(1Q44) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK  3(1Q44) MUTATED       16     20     69     78     91     57     11
  AMP PEAK  3(1Q44) WILD-TYPE      5     16     50     18     18     15      9
                             vv
clus                          CLUS_8
  AMP PEAK  3(1Q44) MUTATED       32
  AMP PEAK  3(1Q44) WILD-TYPE      8
D3V1, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        16                           5
  CLUS_2                        20                          16
  CLUS_3                        69                          50
  CLUS_4                        78                          18
  CLUS_5                        91                          18
  CLUS_6                        57                          15
  CLUS_7                        11                           9
  CLUS_8                        32                           8
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(1Q44) MUTATED       59    107     92     72     44
  AMP PEAK  3(1Q44) WILD-TYPE     42     45     22     16     14
D3V2, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        59                          42
  CLUS_2                       107                          45
  CLUS_3                        92                          22
  CLUS_4                        72                          16
  CLUS_5                        44                          14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(1Q44) MUTATED      205    261     98    196     29
  AMP PEAK  3(1Q44) WILD-TYPE     70    146      0     61     14
D3V3, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                       205                          70
  CLUS_2                       261                         146
  CLUS_3                        98                           0
  CLUS_4                       196                          61
  CLUS_5                        29                          14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(1Q44) MUTATED       97     98    143     81     97     37
  AMP PEAK  3(1Q44) WILD-TYPE     56     15     34     50     31     18
D3V4, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        97                          56
  CLUS_2                        98                          15
  CLUS_3                       143                          34
  CLUS_4                        81                          50
  CLUS_5                        97                          31
  CLUS_6                        37                          18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q44) MUTATED      110     96     84
  AMP PEAK  3(1Q44) WILD-TYPE     38     38     33
D3V5, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                       110                          38
  CLUS_2                        96                          38
  CLUS_3                        84                          33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(1Q44) MUTATED       50     32     70     36     78     24
  AMP PEAK  3(1Q44) WILD-TYPE     14     14     20     16     38      7
D3V6, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        50                          14
  CLUS_2                        32                          14
  CLUS_3                        70                          20
  CLUS_4                        36                          16
  CLUS_5                        78                          38
  CLUS_6                        24                           7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q44) MUTATED      406    226    154
  AMP PEAK  3(1Q44) WILD-TYPE    153     78     58
D3V7, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                       406                         153
  CLUS_2                       226                          78
  CLUS_3                       154                          58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(1Q44) MUTATED      191    133     61    221    143     37
  AMP PEAK  3(1Q44) WILD-TYPE     98     30     29     69     40     23
D3V8, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                       191                          98
  CLUS_2                       133                          30
  CLUS_3                        61                          29
  CLUS_4                       221                          69
  CLUS_5                       143                          40
  CLUS_6                        37                          23
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(1Q44) MUTATED      225    153    203    192
  AMP PEAK  3(1Q44) WILD-TYPE     80     59     66     83
D3V9, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                       225                          80
  CLUS_2                       153                          59
  CLUS_3                       203                          66
  CLUS_4                       192                          83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(1Q44) MUTATED      212    112    174    117     54    104
  AMP PEAK  3(1Q44) WILD-TYPE     82     40     71     23     42     30
D3V10, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                       212                          82
  CLUS_2                       112                          40
  CLUS_3                       174                          71
  CLUS_4                       117                          23
  CLUS_5                        54                          42
  CLUS_6                       104                          30
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(1Q44) MUTATED      124    107     76     71     99
  AMP PEAK  3(1Q44) WILD-TYPE     56     32     23     40     34
D3V11, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                       124                          56
  CLUS_2                       107                          32
  CLUS_3                        76                          23
  CLUS_4                        71                          40
  CLUS_5                        99                          34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q44) MUTATED      212    189     76
  AMP PEAK  3(1Q44) WILD-TYPE     93     58     34
D3V12, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                       212                          93
  CLUS_2                       189                          58
  CLUS_3                        76                          34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = AMP PEAK  4(3P25.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(3P25.1) MUTATED        6      7     34     20     18     25
  AMP PEAK  4(3P25.1) WILD-TYPE     15     29     85     76     91     47
                               vv
clus                            CLUS_7 CLUS_8
  AMP PEAK  4(3P25.1) MUTATED        7      1
  AMP PEAK  4(3P25.1) WILD-TYPE     13     39
D4V1, multiclass
        clus
vv       AMP PEAK  4(3P25.1) MUTATED AMP PEAK  4(3P25.1) WILD-TYPE
  CLUS_1                           6                            15
  CLUS_2                           7                            29
  CLUS_3                          34                            85
  CLUS_4                          20                            76
  CLUS_5                          18                            91
  CLUS_6                          25                            47
  CLUS_7                           7                            13
  CLUS_8                           1                            39
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(3P25.1) MUTATED       27     18     42     18     13
  AMP PEAK  4(3P25.1) WILD-TYPE     74    134     72     70     45
D4V2, multiclass
        clus
vv       AMP PEAK  4(3P25.1) MUTATED AMP PEAK  4(3P25.1) WILD-TYPE
  CLUS_1                          27                            74
  CLUS_2                          18                           134
  CLUS_3                          42                            72
  CLUS_4                          18                            70
  CLUS_5                          13                            45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(3P25.1) MUTATED       76     19     23     69     11
  AMP PEAK  4(3P25.1) WILD-TYPE    199    388     75    188     32
D4V3, multiclass
        clus
vv       AMP PEAK  4(3P25.1) MUTATED AMP PEAK  4(3P25.1) WILD-TYPE
  CLUS_1                          76                           199
  CLUS_2                          19                           388
  CLUS_3                          23                            75
  CLUS_4                          69                           188
  CLUS_5                          11                            32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(3P25.1) MUTATED       32     24     11     13     31      5
  AMP PEAK  4(3P25.1) WILD-TYPE    121     89    166    118     97     50
D4V4, multiclass
        clus
vv       AMP PEAK  4(3P25.1) MUTATED AMP PEAK  4(3P25.1) WILD-TYPE
  CLUS_1                          32                           121
  CLUS_2                          24                            89
  CLUS_3                          11                           166
  CLUS_4                          13                           118
  CLUS_5                          31                            97
  CLUS_6                           5                            50
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(3P25.1) MUTATED       42     29     23
  AMP PEAK  4(3P25.1) WILD-TYPE    106    105     94
D4V5, multiclass
        clus
vv       AMP PEAK  4(3P25.1) MUTATED AMP PEAK  4(3P25.1) WILD-TYPE
  CLUS_1                          42                           106
  CLUS_2                          29                           105
  CLUS_3                          23                            94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(3P25.1) MUTATED       16      9     20      9     30     10
  AMP PEAK  4(3P25.1) WILD-TYPE     48     37     70     43     86     21
D4V6, multiclass
        clus
vv       AMP PEAK  4(3P25.1) MUTATED AMP PEAK  4(3P25.1) WILD-TYPE
  CLUS_1                          16                            48
  CLUS_2                           9                            37
  CLUS_3                          20                            70
  CLUS_4                           9                            43
  CLUS_5                          30                            86
  CLUS_6                          10                            21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(3P25.1) MUTATED      108     79     11
  AMP PEAK  4(3P25.1) WILD-TYPE    451    225    201
D4V7, multiclass
        clus
vv       AMP PEAK  4(3P25.1) MUTATED AMP PEAK  4(3P25.1) WILD-TYPE
  CLUS_1                         108                           451
  CLUS_2                          79                           225
  CLUS_3                          11                           201
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(3P25.1) MUTATED       57     53      4     28     43     13
  AMP PEAK  4(3P25.1) WILD-TYPE    232    110     86    262    140     47
D4V8, multiclass
        clus
vv       AMP PEAK  4(3P25.1) MUTATED AMP PEAK  4(3P25.1) WILD-TYPE
  CLUS_1                          57                           232
  CLUS_2                          53                           110
  CLUS_3                           4                            86
  CLUS_4                          28                           262
  CLUS_5                          43                           140
  CLUS_6                          13                            47
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(3P25.1) MUTATED       81     14     40     55
  AMP PEAK  4(3P25.1) WILD-TYPE    224    198    229    220
D4V9, multiclass
        clus
vv       AMP PEAK  4(3P25.1) MUTATED AMP PEAK  4(3P25.1) WILD-TYPE
  CLUS_1                          81                           224
  CLUS_2                          14                           198
  CLUS_3                          40                           229
  CLUS_4                          55                           220
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(3P25.1) MUTATED       68     37     20     20     12     33
  AMP PEAK  4(3P25.1) WILD-TYPE    226    115    225    120     84    101
D4V10, multiclass
        clus
vv       AMP PEAK  4(3P25.1) MUTATED AMP PEAK  4(3P25.1) WILD-TYPE
  CLUS_1                          68                           226
  CLUS_2                          37                           115
  CLUS_3                          20                           225
  CLUS_4                          20                           120
  CLUS_5                          12                            84
  CLUS_6                          33                           101
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(3P25.1) MUTATED       36     27     13      9     18
  AMP PEAK  4(3P25.1) WILD-TYPE    144    112     86    102    115
D4V11, multiclass
        clus
vv       AMP PEAK  4(3P25.1) MUTATED AMP PEAK  4(3P25.1) WILD-TYPE
  CLUS_1                          36                           144
  CLUS_2                          27                           112
  CLUS_3                          13                            86
  CLUS_4                           9                           102
  CLUS_5                          18                           115
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(3P25.1) MUTATED       58     33     12
  AMP PEAK  4(3P25.1) WILD-TYPE    247    214     98
D4V12, multiclass
        clus
vv       AMP PEAK  4(3P25.1) MUTATED AMP PEAK  4(3P25.1) WILD-TYPE
  CLUS_1                          58                           247
  CLUS_2                          33                           214
  CLUS_3                          12                            98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = AMP PEAK  5(3Q26.32) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(3Q26.32) MUTATED        5     11     41     58     19     34
  AMP PEAK  5(3Q26.32) WILD-TYPE     16     25     78     38     90     38
                                vv
clus                             CLUS_7 CLUS_8
  AMP PEAK  5(3Q26.32) MUTATED        9      4
  AMP PEAK  5(3Q26.32) WILD-TYPE     11     36
D5V1, multiclass
        clus
vv       AMP PEAK  5(3Q26.32) MUTATED AMP PEAK  5(3Q26.32) WILD-TYPE
  CLUS_1                            5                             16
  CLUS_2                           11                             25
  CLUS_3                           41                             78
  CLUS_4                           58                             38
  CLUS_5                           19                             90
  CLUS_6                           34                             38
  CLUS_7                            9                             11
  CLUS_8                            4                             36
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(3Q26.32) MUTATED       29     29     57     53     13
  AMP PEAK  5(3Q26.32) WILD-TYPE     72    123     57     35     45
D5V2, multiclass
        clus
vv       AMP PEAK  5(3Q26.32) MUTATED AMP PEAK  5(3Q26.32) WILD-TYPE
  CLUS_1                           29                             72
  CLUS_2                           29                            123
  CLUS_3                           57                             57
  CLUS_4                           53                             35
  CLUS_5                           13                             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(3Q26.32) MUTATED      103     37     29    158     13
  AMP PEAK  5(3Q26.32) WILD-TYPE    172    370     69     99     30
D5V3, multiclass
        clus
vv       AMP PEAK  5(3Q26.32) MUTATED AMP PEAK  5(3Q26.32) WILD-TYPE
  CLUS_1                          103                            172
  CLUS_2                           37                            370
  CLUS_3                           29                             69
  CLUS_4                          158                             99
  CLUS_5                           13                             30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(3Q26.32) MUTATED       44     35     20     25     81     14
  AMP PEAK  5(3Q26.32) WILD-TYPE    109     78    157    106     47     41
D5V4, multiclass
        clus
vv       AMP PEAK  5(3Q26.32) MUTATED AMP PEAK  5(3Q26.32) WILD-TYPE
  CLUS_1                           44                            109
  CLUS_2                           35                             78
  CLUS_3                           20                            157
  CLUS_4                           25                            106
  CLUS_5                           81                             47
  CLUS_6                           14                             41
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(3Q26.32) MUTATED       76     36     30
  AMP PEAK  5(3Q26.32) WILD-TYPE     72     98     87
D5V5, multiclass
        clus
vv       AMP PEAK  5(3Q26.32) MUTATED AMP PEAK  5(3Q26.32) WILD-TYPE
  CLUS_1                           76                             72
  CLUS_2                           36                             98
  CLUS_3                           30                             87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(3Q26.32) MUTATED       22     12     54     12     32     10
  AMP PEAK  5(3Q26.32) WILD-TYPE     42     34     36     40     84     21
D5V6, multiclass
        clus
vv       AMP PEAK  5(3Q26.32) MUTATED AMP PEAK  5(3Q26.32) WILD-TYPE
  CLUS_1                           22                             42
  CLUS_2                           12                             34
  CLUS_3                           54                             36
  CLUS_4                           12                             40
  CLUS_5                           32                             84
  CLUS_6                           10                             21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(3Q26.32) MUTATED      146    170     22
  AMP PEAK  5(3Q26.32) WILD-TYPE    413    134    190
D5V7, multiclass
        clus
vv       AMP PEAK  5(3Q26.32) MUTATED AMP PEAK  5(3Q26.32) WILD-TYPE
  CLUS_1                          146                            413
  CLUS_2                          170                            134
  CLUS_3                           22                            190
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(3Q26.32) MUTATED       72     67      5     52    116     26
  AMP PEAK  5(3Q26.32) WILD-TYPE    217     96     85    238     67     34
D5V8, multiclass
        clus
vv       AMP PEAK  5(3Q26.32) MUTATED AMP PEAK  5(3Q26.32) WILD-TYPE
  CLUS_1                           72                            217
  CLUS_2                           67                             96
  CLUS_3                            5                             85
  CLUS_4                           52                            238
  CLUS_5                          116                             67
  CLUS_6                           26                             34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(3Q26.32) MUTATED      162     32     52     85
  AMP PEAK  5(3Q26.32) WILD-TYPE    143    180    217    190
D5V9, multiclass
        clus
vv       AMP PEAK  5(3Q26.32) MUTATED AMP PEAK  5(3Q26.32) WILD-TYPE
  CLUS_1                          162                            143
  CLUS_2                           32                            180
  CLUS_3                           52                            217
  CLUS_4                           85                            190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(3Q26.32) MUTATED       93     70     30     33     20     85
  AMP PEAK  5(3Q26.32) WILD-TYPE    201     82    215    107     76     49
D5V10, multiclass
        clus
vv       AMP PEAK  5(3Q26.32) MUTATED AMP PEAK  5(3Q26.32) WILD-TYPE
  CLUS_1                           93                            201
  CLUS_2                           70                             82
  CLUS_3                           30                            215
  CLUS_4                           33                            107
  CLUS_5                           20                             76
  CLUS_6                           85                             49
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(3Q26.32) MUTATED       52     77     14     21     29
  AMP PEAK  5(3Q26.32) WILD-TYPE    128     62     85     90    104
D5V11, multiclass
        clus
vv       AMP PEAK  5(3Q26.32) MUTATED AMP PEAK  5(3Q26.32) WILD-TYPE
  CLUS_1                           52                            128
  CLUS_2                           77                             62
  CLUS_3                           14                             85
  CLUS_4                           21                             90
  CLUS_5                           29                            104
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(3Q26.32) MUTATED      119     49     25
  AMP PEAK  5(3Q26.32) WILD-TYPE    186    198     85
D5V12, multiclass
        clus
vv       AMP PEAK  5(3Q26.32) MUTATED AMP PEAK  5(3Q26.32) WILD-TYPE
  CLUS_1                          119                            186
  CLUS_2                           49                            198
  CLUS_3                           25                             85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = AMP PEAK  6(4Q13.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(4Q13.3) MUTATED        4      3     32     18      3     18
  AMP PEAK  6(4Q13.3) WILD-TYPE     17     33     87     78    106     54
                               vv
clus                            CLUS_7 CLUS_8
  AMP PEAK  6(4Q13.3) MUTATED        4      3
  AMP PEAK  6(4Q13.3) WILD-TYPE     16     37
D6V1, multiclass
        clus
vv       AMP PEAK  6(4Q13.3) MUTATED AMP PEAK  6(4Q13.3) WILD-TYPE
  CLUS_1                           4                            17
  CLUS_2                           3                            33
  CLUS_3                          32                            87
  CLUS_4                          18                            78
  CLUS_5                           3                           106
  CLUS_6                          18                            54
  CLUS_7                           4                            16
  CLUS_8                           3                            37
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(4Q13.3) MUTATED       22     12     31     18      2
  AMP PEAK  6(4Q13.3) WILD-TYPE     79    140     83     70     56
D6V2, multiclass
        clus
vv       AMP PEAK  6(4Q13.3) MUTATED AMP PEAK  6(4Q13.3) WILD-TYPE
  CLUS_1                          22                            79
  CLUS_2                          12                           140
  CLUS_3                          31                            83
  CLUS_4                          18                            70
  CLUS_5                           2                            56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(4Q13.3) MUTATED       75     21      2     59      6
  AMP PEAK  6(4Q13.3) WILD-TYPE    200    386     96    198     37
D6V3, multiclass
        clus
vv       AMP PEAK  6(4Q13.3) MUTATED AMP PEAK  6(4Q13.3) WILD-TYPE
  CLUS_1                          75                           200
  CLUS_2                          21                           386
  CLUS_3                           2                            96
  CLUS_4                          59                           198
  CLUS_5                           6                            37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(4Q13.3) MUTATED       37     12      8     13     30      5
  AMP PEAK  6(4Q13.3) WILD-TYPE    116    101    169    118     98     50
D6V4, multiclass
        clus
vv       AMP PEAK  6(4Q13.3) MUTATED AMP PEAK  6(4Q13.3) WILD-TYPE
  CLUS_1                          37                           116
  CLUS_2                          12                           101
  CLUS_3                           8                           169
  CLUS_4                          13                           118
  CLUS_5                          30                            98
  CLUS_6                           5                            50
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(4Q13.3) MUTATED       31     16     17
  AMP PEAK  6(4Q13.3) WILD-TYPE    117    118    100
D6V5, multiclass
        clus
vv       AMP PEAK  6(4Q13.3) MUTATED AMP PEAK  6(4Q13.3) WILD-TYPE
  CLUS_1                          31                           117
  CLUS_2                          16                           118
  CLUS_3                          17                           100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(4Q13.3) MUTATED        5      4     16      8     25      6
  AMP PEAK  6(4Q13.3) WILD-TYPE     59     42     74     44     91     25
D6V6, multiclass
        clus
vv       AMP PEAK  6(4Q13.3) MUTATED AMP PEAK  6(4Q13.3) WILD-TYPE
  CLUS_1                           5                            59
  CLUS_2                           4                            42
  CLUS_3                          16                            74
  CLUS_4                           8                            44
  CLUS_5                          25                            91
  CLUS_6                           6                            25
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(4Q13.3) MUTATED       84     68     11
  AMP PEAK  6(4Q13.3) WILD-TYPE    475    236    201
D6V7, multiclass
        clus
vv       AMP PEAK  6(4Q13.3) MUTATED AMP PEAK  6(4Q13.3) WILD-TYPE
  CLUS_1                          84                           475
  CLUS_2                          68                           236
  CLUS_3                          11                           201
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(4Q13.3) MUTATED       41     34      2     29     39     18
  AMP PEAK  6(4Q13.3) WILD-TYPE    248    129     88    261    144     42
D6V8, multiclass
        clus
vv       AMP PEAK  6(4Q13.3) MUTATED AMP PEAK  6(4Q13.3) WILD-TYPE
  CLUS_1                          41                           248
  CLUS_2                          34                           129
  CLUS_3                           2                            88
  CLUS_4                          29                           261
  CLUS_5                          39                           144
  CLUS_6                          18                            42
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(4Q13.3) MUTATED       72     14     31     44
  AMP PEAK  6(4Q13.3) WILD-TYPE    233    198    238    231
D6V9, multiclass
        clus
vv       AMP PEAK  6(4Q13.3) MUTATED AMP PEAK  6(4Q13.3) WILD-TYPE
  CLUS_1                          72                           233
  CLUS_2                          14                           198
  CLUS_3                          31                           238
  CLUS_4                          44                           231
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(4Q13.3) MUTATED       59     38     18      5     11     30
  AMP PEAK  6(4Q13.3) WILD-TYPE    235    114    227    135     85    104
D6V10, multiclass
        clus
vv       AMP PEAK  6(4Q13.3) MUTATED AMP PEAK  6(4Q13.3) WILD-TYPE
  CLUS_1                          59                           235
  CLUS_2                          38                           114
  CLUS_3                          18                           227
  CLUS_4                           5                           135
  CLUS_5                          11                            85
  CLUS_6                          30                           104
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(4Q13.3) MUTATED       33     31      9      9     15
  AMP PEAK  6(4Q13.3) WILD-TYPE    147    108     90    102    118
D6V11, multiclass
        clus
vv       AMP PEAK  6(4Q13.3) MUTATED AMP PEAK  6(4Q13.3) WILD-TYPE
  CLUS_1                          33                           147
  CLUS_2                          31                           108
  CLUS_3                           9                            90
  CLUS_4                           9                           102
  CLUS_5                          15                           118
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(4Q13.3) MUTATED       65     22     10
  AMP PEAK  6(4Q13.3) WILD-TYPE    240    225    100
D6V12, multiclass
        clus
vv       AMP PEAK  6(4Q13.3) MUTATED AMP PEAK  6(4Q13.3) WILD-TYPE
  CLUS_1                          65                           240
  CLUS_2                          22                           225
  CLUS_3                          10                           100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = AMP PEAK  7(5P15.33) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(5P15.33) MUTATED        8     13     43     46     32     32
  AMP PEAK  7(5P15.33) WILD-TYPE     13     23     76     50     77     40
                                vv
clus                             CLUS_7 CLUS_8
  AMP PEAK  7(5P15.33) MUTATED       12      8
  AMP PEAK  7(5P15.33) WILD-TYPE      8     32
D7V1, multiclass
        clus
vv       AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                            8                             13
  CLUS_2                           13                             23
  CLUS_3                           43                             76
  CLUS_4                           46                             50
  CLUS_5                           32                             77
  CLUS_6                           32                             40
  CLUS_7                           12                              8
  CLUS_8                            8                             32
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(5P15.33) MUTATED       34     44     59     40     17
  AMP PEAK  7(5P15.33) WILD-TYPE     67    108     55     48     41
D7V2, multiclass
        clus
vv       AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                           34                             67
  CLUS_2                           44                            108
  CLUS_3                           59                             55
  CLUS_4                           40                             48
  CLUS_5                           17                             41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(5P15.33) MUTATED      126     68     51    132     17
  AMP PEAK  7(5P15.33) WILD-TYPE    149    339     47    125     26
D7V3, multiclass
        clus
vv       AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                          126                            149
  CLUS_2                           68                            339
  CLUS_3                           51                             47
  CLUS_4                          132                            125
  CLUS_5                           17                             26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(5P15.33) MUTATED       50     52     49     34     68     13
  AMP PEAK  7(5P15.33) WILD-TYPE    103     61    128     97     60     42
D7V4, multiclass
        clus
vv       AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                           50                            103
  CLUS_2                           52                             61
  CLUS_3                           49                            128
  CLUS_4                           34                             97
  CLUS_5                           68                             60
  CLUS_6                           13                             42
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(5P15.33) MUTATED       69     46     42
  AMP PEAK  7(5P15.33) WILD-TYPE     79     88     75
D7V5, multiclass
        clus
vv       AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                           69                             79
  CLUS_2                           46                             88
  CLUS_3                           42                             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(5P15.33) MUTATED       25     18     38     16     46     14
  AMP PEAK  7(5P15.33) WILD-TYPE     39     28     52     36     70     17
D7V6, multiclass
        clus
vv       AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                           25                             39
  CLUS_2                           18                             28
  CLUS_3                           38                             52
  CLUS_4                           16                             36
  CLUS_5                           46                             70
  CLUS_6                           14                             17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(5P15.33) MUTATED      189    147     55
  AMP PEAK  7(5P15.33) WILD-TYPE    370    157    157
D7V7, multiclass
        clus
vv       AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                          189                            370
  CLUS_2                          147                            157
  CLUS_3                           55                            157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(5P15.33) MUTATED       97     78     20     81     89     26
  AMP PEAK  7(5P15.33) WILD-TYPE    192     85     70    209     94     34
D7V8, multiclass
        clus
vv       AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                           97                            192
  CLUS_2                           78                             85
  CLUS_3                           20                             70
  CLUS_4                           81                            209
  CLUS_5                           89                             94
  CLUS_6                           26                             34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(5P15.33) MUTATED      136     50     88    110
  AMP PEAK  7(5P15.33) WILD-TYPE    169    162    181    165
D7V9, multiclass
        clus
vv       AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                          136                            169
  CLUS_2                           50                            162
  CLUS_3                           88                            181
  CLUS_4                          110                            165
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(5P15.33) MUTATED      110     68     58     52     32     64
  AMP PEAK  7(5P15.33) WILD-TYPE    184     84    187     88     64     70
D7V10, multiclass
        clus
vv       AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                          110                            184
  CLUS_2                           68                             84
  CLUS_3                           58                            187
  CLUS_4                           52                             88
  CLUS_5                           32                             64
  CLUS_6                           64                             70
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(5P15.33) MUTATED       68     66     36     33     33
  AMP PEAK  7(5P15.33) WILD-TYPE    112     73     63     78    100
D7V11, multiclass
        clus
vv       AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                           68                            112
  CLUS_2                           66                             73
  CLUS_3                           36                             63
  CLUS_4                           33                             78
  CLUS_5                           33                            100
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(5P15.33) MUTATED      128     71     37
  AMP PEAK  7(5P15.33) WILD-TYPE    177    176     73
D7V12, multiclass
        clus
vv       AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                          128                            177
  CLUS_2                           71                            176
  CLUS_3                           37                             73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = AMP PEAK  8(6P23) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK  8(6P23) MUTATED        3      7     30     49     18     28      9
  AMP PEAK  8(6P23) WILD-TYPE     18     29     89     47     91     44     11
                             vv
clus                          CLUS_8
  AMP PEAK  8(6P23) MUTATED        6
  AMP PEAK  8(6P23) WILD-TYPE     34
D8V1, multiclass
        clus
vv       AMP PEAK  8(6P23) MUTATED AMP PEAK  8(6P23) WILD-TYPE
  CLUS_1                         3                          18
  CLUS_2                         7                          29
  CLUS_3                        30                          89
  CLUS_4                        49                          47
  CLUS_5                        18                          91
  CLUS_6                        28                          44
  CLUS_7                         9                          11
  CLUS_8                         6                          34
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(6P23) MUTATED       22     28     48     45      7
  AMP PEAK  8(6P23) WILD-TYPE     79    124     66     43     51
D8V2, multiclass
        clus
vv       AMP PEAK  8(6P23) MUTATED AMP PEAK  8(6P23) WILD-TYPE
  CLUS_1                        22                          79
  CLUS_2                        28                         124
  CLUS_3                        48                          66
  CLUS_4                        45                          43
  CLUS_5                         7                          51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(6P23) MUTATED       87     30     22    145     15
  AMP PEAK  8(6P23) WILD-TYPE    188    377     76    112     28
D8V3, multiclass
        clus
vv       AMP PEAK  8(6P23) MUTATED AMP PEAK  8(6P23) WILD-TYPE
  CLUS_1                        87                         188
  CLUS_2                        30                         377
  CLUS_3                        22                          76
  CLUS_4                       145                         112
  CLUS_5                        15                          28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(6P23) MUTATED       60     31     11     24     72      4
  AMP PEAK  8(6P23) WILD-TYPE     93     82    166    107     56     51
D8V4, multiclass
        clus
vv       AMP PEAK  8(6P23) MUTATED AMP PEAK  8(6P23) WILD-TYPE
  CLUS_1                        60                          93
  CLUS_2                        31                          82
  CLUS_3                        11                         166
  CLUS_4                        24                         107
  CLUS_5                        72                          56
  CLUS_6                         4                          51
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(6P23) MUTATED       67     26     24
  AMP PEAK  8(6P23) WILD-TYPE     81    108     93
D8V5, multiclass
        clus
vv       AMP PEAK  8(6P23) MUTATED AMP PEAK  8(6P23) WILD-TYPE
  CLUS_1                        67                          81
  CLUS_2                        26                         108
  CLUS_3                        24                          93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(6P23) MUTATED       14      9     46     12     28      8
  AMP PEAK  8(6P23) WILD-TYPE     50     37     44     40     88     23
D8V6, multiclass
        clus
vv       AMP PEAK  8(6P23) MUTATED AMP PEAK  8(6P23) WILD-TYPE
  CLUS_1                        14                          50
  CLUS_2                         9                          37
  CLUS_3                        46                          44
  CLUS_4                        12                          40
  CLUS_5                        28                          88
  CLUS_6                         8                          23
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(6P23) MUTATED      130    147     21
  AMP PEAK  8(6P23) WILD-TYPE    429    157    191
D8V7, multiclass
        clus
vv       AMP PEAK  8(6P23) MUTATED AMP PEAK  8(6P23) WILD-TYPE
  CLUS_1                       130                         429
  CLUS_2                       147                         157
  CLUS_3                        21                         191
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(6P23) MUTATED       56     70      3     53     97     19
  AMP PEAK  8(6P23) WILD-TYPE    233     93     87    237     86     41
D8V8, multiclass
        clus
vv       AMP PEAK  8(6P23) MUTATED AMP PEAK  8(6P23) WILD-TYPE
  CLUS_1                        56                         233
  CLUS_2                        70                          93
  CLUS_3                         3                          87
  CLUS_4                        53                         237
  CLUS_5                        97                          86
  CLUS_6                        19                          41
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(6P23) MUTATED      146     24     56     61
  AMP PEAK  8(6P23) WILD-TYPE    159    188    213    214
D8V9, multiclass
        clus
vv       AMP PEAK  8(6P23) MUTATED AMP PEAK  8(6P23) WILD-TYPE
  CLUS_1                       146                         159
  CLUS_2                        24                         188
  CLUS_3                        56                         213
  CLUS_4                        61                         214
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(6P23) MUTATED       83     63     28     21     20     72
  AMP PEAK  8(6P23) WILD-TYPE    211     89    217    119     76     62
D8V10, multiclass
        clus
vv       AMP PEAK  8(6P23) MUTATED AMP PEAK  8(6P23) WILD-TYPE
  CLUS_1                        83                         211
  CLUS_2                        63                          89
  CLUS_3                        28                         217
  CLUS_4                        21                         119
  CLUS_5                        20                          76
  CLUS_6                        72                          62
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(6P23) MUTATED       42     67     21     12     24
  AMP PEAK  8(6P23) WILD-TYPE    138     72     78     99    109
D8V11, multiclass
        clus
vv       AMP PEAK  8(6P23) MUTATED AMP PEAK  8(6P23) WILD-TYPE
  CLUS_1                        42                         138
  CLUS_2                        67                          72
  CLUS_3                        21                          78
  CLUS_4                        12                          99
  CLUS_5                        24                         109
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(6P23) MUTATED      110     44     12
  AMP PEAK  8(6P23) WILD-TYPE    195    203     98
D8V12, multiclass
        clus
vv       AMP PEAK  8(6P23) MUTATED AMP PEAK  8(6P23) WILD-TYPE
  CLUS_1                       110                         195
  CLUS_2                        44                         203
  CLUS_3                        12                          98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = AMP PEAK  9(6Q21) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK  9(6Q21) MUTATED        4      1     11     42     11     24      9
  AMP PEAK  9(6Q21) WILD-TYPE     17     35    108     54     98     48     11
                             vv
clus                          CLUS_8
  AMP PEAK  9(6Q21) MUTATED        2
  AMP PEAK  9(6Q21) WILD-TYPE     38
D9V1, multiclass
        clus
vv       AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE
  CLUS_1                         4                          17
  CLUS_2                         1                          35
  CLUS_3                        11                         108
  CLUS_4                        42                          54
  CLUS_5                        11                          98
  CLUS_6                        24                          48
  CLUS_7                         9                          11
  CLUS_8                         2                          38
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(6Q21) MUTATED       10     14     39     37      4
  AMP PEAK  9(6Q21) WILD-TYPE     91    138     75     51     54
D9V2, multiclass
        clus
vv       AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE
  CLUS_1                        10                          91
  CLUS_2                        14                         138
  CLUS_3                        39                          75
  CLUS_4                        37                          51
  CLUS_5                         4                          54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(6Q21) MUTATED       29     24     16    128      5
  AMP PEAK  9(6Q21) WILD-TYPE    246    383     82    129     38
D9V3, multiclass
        clus
vv       AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE
  CLUS_1                        29                         246
  CLUS_2                        24                         383
  CLUS_3                        16                          82
  CLUS_4                       128                         129
  CLUS_5                         5                          38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(6Q21) MUTATED       20     18      5     22     61      4
  AMP PEAK  9(6Q21) WILD-TYPE    133     95    172    109     67     51
D9V4, multiclass
        clus
vv       AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE
  CLUS_1                        20                         133
  CLUS_2                        18                          95
  CLUS_3                         5                         172
  CLUS_4                        22                         109
  CLUS_5                        61                          67
  CLUS_6                         4                          51
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(6Q21) MUTATED       54     13     16
  AMP PEAK  9(6Q21) WILD-TYPE     94    121    101
D9V5, multiclass
        clus
vv       AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE
  CLUS_1                        54                          94
  CLUS_2                        13                         121
  CLUS_3                        16                         101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(6Q21) MUTATED        6      6     38      8     18      7
  AMP PEAK  9(6Q21) WILD-TYPE     58     40     52     44     98     24
D9V6, multiclass
        clus
vv       AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE
  CLUS_1                         6                          58
  CLUS_2                         6                          40
  CLUS_3                        38                          52
  CLUS_4                         8                          44
  CLUS_5                        18                          98
  CLUS_6                         7                          24
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(6Q21) MUTATED       65    123     12
  AMP PEAK  9(6Q21) WILD-TYPE    494    181    200
D9V7, multiclass
        clus
vv       AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE
  CLUS_1                        65                         494
  CLUS_2                       123                         181
  CLUS_3                        12                         200
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(6Q21) MUTATED       25     47      2     24     82     20
  AMP PEAK  9(6Q21) WILD-TYPE    264    116     88    266    101     40
D9V8, multiclass
        clus
vv       AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE
  CLUS_1                        25                         264
  CLUS_2                        47                         116
  CLUS_3                         2                          88
  CLUS_4                        24                         266
  CLUS_5                        82                         101
  CLUS_6                        20                          40
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(6Q21) MUTATED      115     16     25     36
  AMP PEAK  9(6Q21) WILD-TYPE    190    196    244    239
D9V9, multiclass
        clus
vv       AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE
  CLUS_1                       115                         190
  CLUS_2                        16                         196
  CLUS_3                        25                         244
  CLUS_4                        36                         239
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(6Q21) MUTATED       50     58     14      8      4     58
  AMP PEAK  9(6Q21) WILD-TYPE    244     94    231    132     92     76
D9V10, multiclass
        clus
vv       AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE
  CLUS_1                        50                         244
  CLUS_2                        58                          94
  CLUS_3                        14                         231
  CLUS_4                         8                         132
  CLUS_5                         4                          92
  CLUS_6                        58                          76
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(6Q21) MUTATED       21     68      8      7     16
  AMP PEAK  9(6Q21) WILD-TYPE    159     71     91    104    117
D9V11, multiclass
        clus
vv       AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE
  CLUS_1                        21                         159
  CLUS_2                        68                          71
  CLUS_3                         8                          91
  CLUS_4                         7                         104
  CLUS_5                        16                         117
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(6Q21) MUTATED       85     26      9
  AMP PEAK  9(6Q21) WILD-TYPE    220    221    101
D9V12, multiclass
        clus
vv       AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE
  CLUS_1                        85                         220
  CLUS_2                        26                         221
  CLUS_3                         9                         101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = AMP PEAK 10(8P11.23) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(8P11.23) MUTATED       11     18     74     33     36     23
  AMP PEAK 10(8P11.23) WILD-TYPE     10     18     45     63     73     49
                                vv
clus                             CLUS_7 CLUS_8
  AMP PEAK 10(8P11.23) MUTATED        5      9
  AMP PEAK 10(8P11.23) WILD-TYPE     15     31
D10V1, multiclass
        clus
vv       AMP PEAK 10(8P11.23) MUTATED AMP PEAK 10(8P11.23) WILD-TYPE
  CLUS_1                           11                             10
  CLUS_2                           18                             18
  CLUS_3                           74                             45
  CLUS_4                           33                             63
  CLUS_5                           36                             73
  CLUS_6                           23                             49
  CLUS_7                            5                             15
  CLUS_8                            9                             31
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(8P11.23) MUTATED       64     62     41     30     12
  AMP PEAK 10(8P11.23) WILD-TYPE     37     90     73     58     46
D10V2, multiclass
        clus
vv       AMP PEAK 10(8P11.23) MUTATED AMP PEAK 10(8P11.23) WILD-TYPE
  CLUS_1                           64                             37
  CLUS_2                           62                             90
  CLUS_3                           41                             73
  CLUS_4                           30                             58
  CLUS_5                           12                             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(8P11.23) MUTATED      147    111     36     76     42
  AMP PEAK 10(8P11.23) WILD-TYPE    128    296     62    181      1
D10V3, multiclass
        clus
vv       AMP PEAK 10(8P11.23) MUTATED AMP PEAK 10(8P11.23) WILD-TYPE
  CLUS_1                          147                            128
  CLUS_2                          111                            296
  CLUS_3                           36                             62
  CLUS_4                           76                            181
  CLUS_5                           42                              1
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(8P11.23) MUTATED       94     49     40     36     46     19
  AMP PEAK 10(8P11.23) WILD-TYPE     59     64    137     95     82     36
D10V4, multiclass
        clus
vv       AMP PEAK 10(8P11.23) MUTATED AMP PEAK 10(8P11.23) WILD-TYPE
  CLUS_1                           94                             59
  CLUS_2                           49                             64
  CLUS_3                           40                            137
  CLUS_4                           36                             95
  CLUS_5                           46                             82
  CLUS_6                           19                             36
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(8P11.23) MUTATED       51     55     58
  AMP PEAK 10(8P11.23) WILD-TYPE     97     79     59
D10V5, multiclass
        clus
vv       AMP PEAK 10(8P11.23) MUTATED AMP PEAK 10(8P11.23) WILD-TYPE
  CLUS_1                           51                             97
  CLUS_2                           55                             79
  CLUS_3                           58                             59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(8P11.23) MUTATED       28     17     32     28     57      2
  AMP PEAK 10(8P11.23) WILD-TYPE     36     29     58     24     59     29
D10V6, multiclass
        clus
vv       AMP PEAK 10(8P11.23) MUTATED AMP PEAK 10(8P11.23) WILD-TYPE
  CLUS_1                           28                             36
  CLUS_2                           17                             29
  CLUS_3                           32                             58
  CLUS_4                           28                             24
  CLUS_5                           57                             59
  CLUS_6                            2                             29
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(8P11.23) MUTATED      246     98     64
  AMP PEAK 10(8P11.23) WILD-TYPE    313    206    148
D10V7, multiclass
        clus
vv       AMP PEAK 10(8P11.23) MUTATED AMP PEAK 10(8P11.23) WILD-TYPE
  CLUS_1                          246                            313
  CLUS_2                           98                            206
  CLUS_3                           64                            148
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(8P11.23) MUTATED      137     72     29     96     59     15
  AMP PEAK 10(8P11.23) WILD-TYPE    152     91     61    194    124     45
D10V8, multiclass
        clus
vv       AMP PEAK 10(8P11.23) MUTATED AMP PEAK 10(8P11.23) WILD-TYPE
  CLUS_1                          137                            152
  CLUS_2                           72                             91
  CLUS_3                           29                             61
  CLUS_4                           96                            194
  CLUS_5                           59                            124
  CLUS_6                           15                             45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(8P11.23) MUTATED      121     67    115    103
  AMP PEAK 10(8P11.23) WILD-TYPE    184    145    154    172
D10V9, multiclass
        clus
vv       AMP PEAK 10(8P11.23) MUTATED AMP PEAK 10(8P11.23) WILD-TYPE
  CLUS_1                          121                            184
  CLUS_2                           67                            145
  CLUS_3                          115                            154
  CLUS_4                          103                            172
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(8P11.23) MUTATED      127     51     93     47     42     46
  AMP PEAK 10(8P11.23) WILD-TYPE    167    101    152     93     54     88
D10V10, multiclass
        clus
vv       AMP PEAK 10(8P11.23) MUTATED AMP PEAK 10(8P11.23) WILD-TYPE
  CLUS_1                          127                            167
  CLUS_2                           51                            101
  CLUS_3                           93                            152
  CLUS_4                           47                             93
  CLUS_5                           42                             54
  CLUS_6                           46                             88
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(8P11.23) MUTATED       79     51     36     36     42
  AMP PEAK 10(8P11.23) WILD-TYPE    101     88     63     75     91
D10V11, multiclass
        clus
vv       AMP PEAK 10(8P11.23) MUTATED AMP PEAK 10(8P11.23) WILD-TYPE
  CLUS_1                           79                            101
  CLUS_2                           51                             88
  CLUS_3                           36                             63
  CLUS_4                           36                             75
  CLUS_5                           42                             91
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(8P11.23) MUTATED      117     87     40
  AMP PEAK 10(8P11.23) WILD-TYPE    188    160     70
D10V12, multiclass
        clus
vv       AMP PEAK 10(8P11.23) MUTATED AMP PEAK 10(8P11.23) WILD-TYPE
  CLUS_1                          117                            188
  CLUS_2                           87                            160
  CLUS_3                           40                             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = AMP PEAK 11(8P11.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(8P11.21) MUTATED       11     13     60     44     39     27
  AMP PEAK 11(8P11.21) WILD-TYPE     10     23     59     52     70     45
                                vv
clus                             CLUS_7 CLUS_8
  AMP PEAK 11(8P11.21) MUTATED        7      9
  AMP PEAK 11(8P11.21) WILD-TYPE     13     31
D11V1, multiclass
        clus
vv       AMP PEAK 11(8P11.21) MUTATED AMP PEAK 11(8P11.21) WILD-TYPE
  CLUS_1                           11                             10
  CLUS_2                           13                             23
  CLUS_3                           60                             59
  CLUS_4                           44                             52
  CLUS_5                           39                             70
  CLUS_6                           27                             45
  CLUS_7                            7                             13
  CLUS_8                            9                             31
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(8P11.21) MUTATED       54     57     45     40     14
  AMP PEAK 11(8P11.21) WILD-TYPE     47     95     69     48     44
D11V2, multiclass
        clus
vv       AMP PEAK 11(8P11.21) MUTATED AMP PEAK 11(8P11.21) WILD-TYPE
  CLUS_1                           54                             47
  CLUS_2                           57                             95
  CLUS_3                           45                             69
  CLUS_4                           40                             48
  CLUS_5                           14                             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(8P11.21) MUTATED      127    107     40    104     43
  AMP PEAK 11(8P11.21) WILD-TYPE    148    300     58    153      0
D11V3, multiclass
        clus
vv       AMP PEAK 11(8P11.21) MUTATED AMP PEAK 11(8P11.21) WILD-TYPE
  CLUS_1                          127                            148
  CLUS_2                          107                            300
  CLUS_3                           40                             58
  CLUS_4                          104                            153
  CLUS_5                           43                              0
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(8P11.21) MUTATED       78     45     42     41     69     17
  AMP PEAK 11(8P11.21) WILD-TYPE     75     68    135     90     59     38
D11V4, multiclass
        clus
vv       AMP PEAK 11(8P11.21) MUTATED AMP PEAK 11(8P11.21) WILD-TYPE
  CLUS_1                           78                             75
  CLUS_2                           45                             68
  CLUS_3                           42                            135
  CLUS_4                           41                             90
  CLUS_5                           69                             59
  CLUS_6                           17                             38
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(8P11.21) MUTATED       57     57     48
  AMP PEAK 11(8P11.21) WILD-TYPE     91     77     69
D11V5, multiclass
        clus
vv       AMP PEAK 11(8P11.21) MUTATED AMP PEAK 11(8P11.21) WILD-TYPE
  CLUS_1                           57                             91
  CLUS_2                           57                             77
  CLUS_3                           48                             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(8P11.21) MUTATED       29     15     41     23     48      6
  AMP PEAK 11(8P11.21) WILD-TYPE     35     31     49     29     68     25
D11V6, multiclass
        clus
vv       AMP PEAK 11(8P11.21) MUTATED AMP PEAK 11(8P11.21) WILD-TYPE
  CLUS_1                           29                             35
  CLUS_2                           15                             31
  CLUS_3                           41                             49
  CLUS_4                           23                             29
  CLUS_5                           48                             68
  CLUS_6                            6                             25
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(8P11.21) MUTATED      226    136     55
  AMP PEAK 11(8P11.21) WILD-TYPE    333    168    157
D11V7, multiclass
        clus
vv       AMP PEAK 11(8P11.21) MUTATED AMP PEAK 11(8P11.21) WILD-TYPE
  CLUS_1                          226                            333
  CLUS_2                          136                            168
  CLUS_3                           55                            157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(8P11.21) MUTATED      126     71     24     87     93     16
  AMP PEAK 11(8P11.21) WILD-TYPE    163     92     66    203     90     44
D11V8, multiclass
        clus
vv       AMP PEAK 11(8P11.21) MUTATED AMP PEAK 11(8P11.21) WILD-TYPE
  CLUS_1                          126                            163
  CLUS_2                           71                             92
  CLUS_3                           24                             66
  CLUS_4                           87                            203
  CLUS_5                           93                             90
  CLUS_6                           16                             44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(8P11.21) MUTATED      144     62    107     99
  AMP PEAK 11(8P11.21) WILD-TYPE    161    150    162    176
D11V9, multiclass
        clus
vv       AMP PEAK 11(8P11.21) MUTATED AMP PEAK 11(8P11.21) WILD-TYPE
  CLUS_1                          144                            161
  CLUS_2                           62                            150
  CLUS_3                          107                            162
  CLUS_4                           99                            176
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(8P11.21) MUTATED      123     51     79     42     44     73
  AMP PEAK 11(8P11.21) WILD-TYPE    171    101    166     98     52     61
D11V10, multiclass
        clus
vv       AMP PEAK 11(8P11.21) MUTATED AMP PEAK 11(8P11.21) WILD-TYPE
  CLUS_1                          123                            171
  CLUS_2                           51                            101
  CLUS_3                           79                            166
  CLUS_4                           42                             98
  CLUS_5                           44                             52
  CLUS_6                           73                             61
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(8P11.21) MUTATED       68     74     31     29     41
  AMP PEAK 11(8P11.21) WILD-TYPE    112     65     68     82     92
D11V11, multiclass
        clus
vv       AMP PEAK 11(8P11.21) MUTATED AMP PEAK 11(8P11.21) WILD-TYPE
  CLUS_1                           68                            112
  CLUS_2                           74                             65
  CLUS_3                           31                             68
  CLUS_4                           29                             82
  CLUS_5                           41                             92
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(8P11.21) MUTATED      134     80     29
  AMP PEAK 11(8P11.21) WILD-TYPE    171    167     81
D11V12, multiclass
        clus
vv       AMP PEAK 11(8P11.21) MUTATED AMP PEAK 11(8P11.21) WILD-TYPE
  CLUS_1                          134                            171
  CLUS_2                           80                            167
  CLUS_3                           29                             81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = AMP PEAK 12(8Q24.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(8Q24.21) MUTATED       17     20     96     83     46     56
  AMP PEAK 12(8Q24.21) WILD-TYPE      4     16     23     13     63     16
                                vv
clus                             CLUS_7 CLUS_8
  AMP PEAK 12(8Q24.21) MUTATED       17     15
  AMP PEAK 12(8Q24.21) WILD-TYPE      3     25
D12V1, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                           17                              4
  CLUS_2                           20                             16
  CLUS_3                           96                             23
  CLUS_4                           83                             13
  CLUS_5                           46                             63
  CLUS_6                           56                             16
  CLUS_7                           17                              3
  CLUS_8                           15                             25
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(8Q24.21) MUTATED       84     83     92     75     16
  AMP PEAK 12(8Q24.21) WILD-TYPE     17     69     22     13     42
D12V2, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                           84                             17
  CLUS_2                           83                             69
  CLUS_3                           92                             22
  CLUS_4                           75                             13
  CLUS_5                           16                             42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(8Q24.21) MUTATED      211    151     42    233     41
  AMP PEAK 12(8Q24.21) WILD-TYPE     64    256     56     24      2
D12V3, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                          211                             64
  CLUS_2                          151                            256
  CLUS_3                           42                             56
  CLUS_4                          233                             24
  CLUS_5                           41                              2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(8Q24.21) MUTATED      114     74     52     67    115     26
  AMP PEAK 12(8Q24.21) WILD-TYPE     39     39    125     64     13     29
D12V4, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                          114                             39
  CLUS_2                           74                             39
  CLUS_3                           52                            125
  CLUS_4                           67                             64
  CLUS_5                          115                             13
  CLUS_6                           26                             29
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(8Q24.21) MUTATED      125     73     76
  AMP PEAK 12(8Q24.21) WILD-TYPE     23     61     41
D12V5, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                          125                             23
  CLUS_2                           73                             61
  CLUS_3                           76                             41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(8Q24.21) MUTATED       34     23     78     31     83     25
  AMP PEAK 12(8Q24.21) WILD-TYPE     30     23     12     21     33      6
D12V6, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                           34                             30
  CLUS_2                           23                             23
  CLUS_3                           78                             12
  CLUS_4                           31                             21
  CLUS_5                           83                             33
  CLUS_6                           25                              6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(8Q24.21) MUTATED      338    255     81
  AMP PEAK 12(8Q24.21) WILD-TYPE    221     49    131
D12V7, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                          338                            221
  CLUS_2                          255                             49
  CLUS_3                           81                            131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(8Q24.21) MUTATED      168    125     27    147    162     45
  AMP PEAK 12(8Q24.21) WILD-TYPE    121     38     63    143     21     15
D12V8, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                          168                            121
  CLUS_2                          125                             38
  CLUS_3                           27                             63
  CLUS_4                          147                            143
  CLUS_5                          162                             21
  CLUS_6                           45                             15
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(8Q24.21) MUTATED      270     83    137    173
  AMP PEAK 12(8Q24.21) WILD-TYPE     35    129    132    102
D12V9, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                          270                             35
  CLUS_2                           83                            129
  CLUS_3                          137                            132
  CLUS_4                          173                            102
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(8Q24.21) MUTATED      201    118    100     68     54    122
  AMP PEAK 12(8Q24.21) WILD-TYPE     93     34    145     72     42     12
D12V10, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                          201                             93
  CLUS_2                          118                             34
  CLUS_3                          100                            145
  CLUS_4                           68                             72
  CLUS_5                           54                             42
  CLUS_6                          122                             12
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(8Q24.21) MUTATED      114    128     41     44     65
  AMP PEAK 12(8Q24.21) WILD-TYPE     66     11     58     67     68
D12V11, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                          114                             66
  CLUS_2                          128                             11
  CLUS_3                           41                             58
  CLUS_4                           44                             67
  CLUS_5                           65                             68
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(8Q24.21) MUTATED      224    116     52
  AMP PEAK 12(8Q24.21) WILD-TYPE     81    131     58
D12V12, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                          224                             81
  CLUS_2                          116                            131
  CLUS_3                           52                             58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = AMP PEAK 13(10P15.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 13(10P15.1) MUTATED        6      4     26     67     12     33
  AMP PEAK 13(10P15.1) WILD-TYPE     15     32     93     29     97     39
                                vv
clus                             CLUS_7 CLUS_8
  AMP PEAK 13(10P15.1) MUTATED        6      7
  AMP PEAK 13(10P15.1) WILD-TYPE     14     33
D13V1, multiclass
        clus
vv       AMP PEAK 13(10P15.1) MUTATED AMP PEAK 13(10P15.1) WILD-TYPE
  CLUS_1                            6                             15
  CLUS_2                            4                             32
  CLUS_3                           26                             93
  CLUS_4                           67                             29
  CLUS_5                           12                             97
  CLUS_6                           33                             39
  CLUS_7                            6                             14
  CLUS_8                            7                             33
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(10P15.1) MUTATED       16     22     53     63      7
  AMP PEAK 13(10P15.1) WILD-TYPE     85    130     61     25     51
D13V2, multiclass
        clus
vv       AMP PEAK 13(10P15.1) MUTATED AMP PEAK 13(10P15.1) WILD-TYPE
  CLUS_1                           16                             85
  CLUS_2                           22                            130
  CLUS_3                           53                             61
  CLUS_4                           63                             25
  CLUS_5                            7                             51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(10P15.1) MUTATED       75     39     17    164      9
  AMP PEAK 13(10P15.1) WILD-TYPE    200    368     81     93     34
D13V3, multiclass
        clus
vv       AMP PEAK 13(10P15.1) MUTATED AMP PEAK 13(10P15.1) WILD-TYPE
  CLUS_1                           75                            200
  CLUS_2                           39                            368
  CLUS_3                           17                             81
  CLUS_4                          164                             93
  CLUS_5                            9                             34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 13(10P15.1) MUTATED       33     29     11     34     87      5
  AMP PEAK 13(10P15.1) WILD-TYPE    120     84    166     97     41     50
D13V4, multiclass
        clus
vv       AMP PEAK 13(10P15.1) MUTATED AMP PEAK 13(10P15.1) WILD-TYPE
  CLUS_1                           33                            120
  CLUS_2                           29                             84
  CLUS_3                           11                            166
  CLUS_4                           34                             97
  CLUS_5                           87                             41
  CLUS_6                            5                             50
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(10P15.1) MUTATED       78     22     29
  AMP PEAK 13(10P15.1) WILD-TYPE     70    112     88
D13V5, multiclass
        clus
vv       AMP PEAK 13(10P15.1) MUTATED AMP PEAK 13(10P15.1) WILD-TYPE
  CLUS_1                           78                             70
  CLUS_2                           22                            112
  CLUS_3                           29                             88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 13(10P15.1) MUTATED        8     14     61      9     28      9
  AMP PEAK 13(10P15.1) WILD-TYPE     56     32     29     43     88     22
D13V6, multiclass
        clus
vv       AMP PEAK 13(10P15.1) MUTATED AMP PEAK 13(10P15.1) WILD-TYPE
  CLUS_1                            8                             56
  CLUS_2                           14                             32
  CLUS_3                           61                             29
  CLUS_4                            9                             43
  CLUS_5                           28                             88
  CLUS_6                            9                             22
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(10P15.1) MUTATED      104    174     26
  AMP PEAK 13(10P15.1) WILD-TYPE    455    130    186
D13V7, multiclass
        clus
vv       AMP PEAK 13(10P15.1) MUTATED AMP PEAK 13(10P15.1) WILD-TYPE
  CLUS_1                          104                            455
  CLUS_2                          174                            130
  CLUS_3                           26                            186
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 13(10P15.1) MUTATED       46     55      3     48    125     27
  AMP PEAK 13(10P15.1) WILD-TYPE    243    108     87    242     58     33
D13V8, multiclass
        clus
vv       AMP PEAK 13(10P15.1) MUTATED AMP PEAK 13(10P15.1) WILD-TYPE
  CLUS_1                           46                            243
  CLUS_2                           55                            108
  CLUS_3                            3                             87
  CLUS_4                           48                            242
  CLUS_5                          125                             58
  CLUS_6                           27                             33
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(10P15.1) MUTATED      161     29     42     64
  AMP PEAK 13(10P15.1) WILD-TYPE    144    183    227    211
D13V9, multiclass
        clus
vv       AMP PEAK 13(10P15.1) MUTATED AMP PEAK 13(10P15.1) WILD-TYPE
  CLUS_1                          161                            144
  CLUS_2                           29                            183
  CLUS_3                           42                            227
  CLUS_4                           64                            211
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 13(10P15.1) MUTATED       85     72     22     20      7     90
  AMP PEAK 13(10P15.1) WILD-TYPE    209     80    223    120     89     44
D13V10, multiclass
        clus
vv       AMP PEAK 13(10P15.1) MUTATED AMP PEAK 13(10P15.1) WILD-TYPE
  CLUS_1                           85                            209
  CLUS_2                           72                             80
  CLUS_3                           22                            223
  CLUS_4                           20                            120
  CLUS_5                            7                             89
  CLUS_6                           90                             44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(10P15.1) MUTATED       35     89     16     11     25
  AMP PEAK 13(10P15.1) WILD-TYPE    145     50     83    100    108
D13V11, multiclass
        clus
vv       AMP PEAK 13(10P15.1) MUTATED AMP PEAK 13(10P15.1) WILD-TYPE
  CLUS_1                           35                            145
  CLUS_2                           89                             50
  CLUS_3                           16                             83
  CLUS_4                           11                            100
  CLUS_5                           25                            108
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(10P15.1) MUTATED      126     36     14
  AMP PEAK 13(10P15.1) WILD-TYPE    179    211     96
D13V12, multiclass
        clus
vv       AMP PEAK 13(10P15.1) MUTATED AMP PEAK 13(10P15.1) WILD-TYPE
  CLUS_1                          126                            179
  CLUS_2                           36                            211
  CLUS_3                           14                             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = AMP PEAK 14(10Q22.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 14(10Q22.3) MUTATED        6      3     16     18      9     23
  AMP PEAK 14(10Q22.3) WILD-TYPE     15     33    103     78    100     49
                                vv
clus                             CLUS_7 CLUS_8
  AMP PEAK 14(10Q22.3) MUTATED        8      3
  AMP PEAK 14(10Q22.3) WILD-TYPE     12     37
D14V1, multiclass
        clus
vv       AMP PEAK 14(10Q22.3) MUTATED AMP PEAK 14(10Q22.3) WILD-TYPE
  CLUS_1                            6                             15
  CLUS_2                            3                             33
  CLUS_3                           16                            103
  CLUS_4                           18                             78
  CLUS_5                            9                            100
  CLUS_6                           23                             49
  CLUS_7                            8                             12
  CLUS_8                            3                             37
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(10Q22.3) MUTATED       11     17     36     17      5
  AMP PEAK 14(10Q22.3) WILD-TYPE     90    135     78     71     53
D14V2, multiclass
        clus
vv       AMP PEAK 14(10Q22.3) MUTATED AMP PEAK 14(10Q22.3) WILD-TYPE
  CLUS_1                           11                             90
  CLUS_2                           17                            135
  CLUS_3                           36                             78
  CLUS_4                           17                             71
  CLUS_5                            5                             53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(10Q22.3) MUTATED       43     25     12     64      6
  AMP PEAK 14(10Q22.3) WILD-TYPE    232    382     86    193     37
D14V3, multiclass
        clus
vv       AMP PEAK 14(10Q22.3) MUTATED AMP PEAK 14(10Q22.3) WILD-TYPE
  CLUS_1                           43                            232
  CLUS_2                           25                            382
  CLUS_3                           12                             86
  CLUS_4                           64                            193
  CLUS_5                            6                             37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 14(10Q22.3) MUTATED       21     18     10     15     28      3
  AMP PEAK 14(10Q22.3) WILD-TYPE    132     95    167    116    100     52
D14V4, multiclass
        clus
vv       AMP PEAK 14(10Q22.3) MUTATED AMP PEAK 14(10Q22.3) WILD-TYPE
  CLUS_1                           21                            132
  CLUS_2                           18                             95
  CLUS_3                           10                            167
  CLUS_4                           15                            116
  CLUS_5                           28                            100
  CLUS_6                            3                             52
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(10Q22.3) MUTATED       38     14     19
  AMP PEAK 14(10Q22.3) WILD-TYPE    110    120     98
D14V5, multiclass
        clus
vv       AMP PEAK 14(10Q22.3) MUTATED AMP PEAK 14(10Q22.3) WILD-TYPE
  CLUS_1                           38                            110
  CLUS_2                           14                            120
  CLUS_3                           19                             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 14(10Q22.3) MUTATED        9     11     21      5     18      7
  AMP PEAK 14(10Q22.3) WILD-TYPE     55     35     69     47     98     24
D14V6, multiclass
        clus
vv       AMP PEAK 14(10Q22.3) MUTATED AMP PEAK 14(10Q22.3) WILD-TYPE
  CLUS_1                            9                             55
  CLUS_2                           11                             35
  CLUS_3                           21                             69
  CLUS_4                            5                             47
  CLUS_5                           18                             98
  CLUS_6                            7                             24
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(10Q22.3) MUTATED       66     69     15
  AMP PEAK 14(10Q22.3) WILD-TYPE    493    235    197
D14V7, multiclass
        clus
vv       AMP PEAK 14(10Q22.3) MUTATED AMP PEAK 14(10Q22.3) WILD-TYPE
  CLUS_1                           66                            493
  CLUS_2                           69                            235
  CLUS_3                           15                            197
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 14(10Q22.3) MUTATED       33     36      2     30     32     17
  AMP PEAK 14(10Q22.3) WILD-TYPE    256    127     88    260    151     43
D14V8, multiclass
        clus
vv       AMP PEAK 14(10Q22.3) MUTATED AMP PEAK 14(10Q22.3) WILD-TYPE
  CLUS_1                           33                            256
  CLUS_2                           36                            127
  CLUS_3                            2                             88
  CLUS_4                           30                            260
  CLUS_5                           32                            151
  CLUS_6                           17                             43
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(10Q22.3) MUTATED       58     20     21     47
  AMP PEAK 14(10Q22.3) WILD-TYPE    247    192    248    228
D14V9, multiclass
        clus
vv       AMP PEAK 14(10Q22.3) MUTATED AMP PEAK 14(10Q22.3) WILD-TYPE
  CLUS_1                           58                            247
  CLUS_2                           20                            192
  CLUS_3                           21                            248
  CLUS_4                           47                            228
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 14(10Q22.3) MUTATED       51     35     13     18      5     24
  AMP PEAK 14(10Q22.3) WILD-TYPE    243    117    232    122     91    110
D14V10, multiclass
        clus
vv       AMP PEAK 14(10Q22.3) MUTATED AMP PEAK 14(10Q22.3) WILD-TYPE
  CLUS_1                           51                            243
  CLUS_2                           35                            117
  CLUS_3                           13                            232
  CLUS_4                           18                            122
  CLUS_5                            5                             91
  CLUS_6                           24                            110
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(10Q22.3) MUTATED       28     30      7      9     11
  AMP PEAK 14(10Q22.3) WILD-TYPE    152    109     92    102    122
D14V11, multiclass
        clus
vv       AMP PEAK 14(10Q22.3) MUTATED AMP PEAK 14(10Q22.3) WILD-TYPE
  CLUS_1                           28                            152
  CLUS_2                           30                            109
  CLUS_3                            7                             92
  CLUS_4                            9                            102
  CLUS_5                           11                            122
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(10Q22.3) MUTATED       51     18     16
  AMP PEAK 14(10Q22.3) WILD-TYPE    254    229     94
D14V12, multiclass
        clus
vv       AMP PEAK 14(10Q22.3) MUTATED AMP PEAK 14(10Q22.3) WILD-TYPE
  CLUS_1                           51                            254
  CLUS_2                           18                            229
  CLUS_3                           16                             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = AMP PEAK 15(11P13) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 15(11P13) MUTATED        5      8     33     27     15     18      5
  AMP PEAK 15(11P13) WILD-TYPE     16     28     86     69     94     54     15
                              vv
clus                           CLUS_8
  AMP PEAK 15(11P13) MUTATED        6
  AMP PEAK 15(11P13) WILD-TYPE     34
D15V1, multiclass
        clus
vv       AMP PEAK 15(11P13) MUTATED AMP PEAK 15(11P13) WILD-TYPE
  CLUS_1                          5                           16
  CLUS_2                          8                           28
  CLUS_3                         33                           86
  CLUS_4                         27                           69
  CLUS_5                         15                           94
  CLUS_6                         18                           54
  CLUS_7                          5                           15
  CLUS_8                          6                           34
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(11P13) MUTATED       28     26     34     25      4
  AMP PEAK 15(11P13) WILD-TYPE     73    126     80     63     54
D15V2, multiclass
        clus
vv       AMP PEAK 15(11P13) MUTATED AMP PEAK 15(11P13) WILD-TYPE
  CLUS_1                         28                           73
  CLUS_2                         26                          126
  CLUS_3                         34                           80
  CLUS_4                         25                           63
  CLUS_5                          4                           54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(11P13) MUTATED       85     27     17     86      8
  AMP PEAK 15(11P13) WILD-TYPE    190    380     81    171     35
D15V3, multiclass
        clus
vv       AMP PEAK 15(11P13) MUTATED AMP PEAK 15(11P13) WILD-TYPE
  CLUS_1                         85                          190
  CLUS_2                         27                          380
  CLUS_3                         17                           81
  CLUS_4                         86                          171
  CLUS_5                          8                           35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 15(11P13) MUTATED       45     20     22     20     38      5
  AMP PEAK 15(11P13) WILD-TYPE    108     93    155    111     90     50
D15V4, multiclass
        clus
vv       AMP PEAK 15(11P13) MUTATED AMP PEAK 15(11P13) WILD-TYPE
  CLUS_1                         45                          108
  CLUS_2                         20                           93
  CLUS_3                         22                          155
  CLUS_4                         20                          111
  CLUS_5                         38                           90
  CLUS_6                          5                           50
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(11P13) MUTATED       44     26     27
  AMP PEAK 15(11P13) WILD-TYPE    104    108     90
D15V5, multiclass
        clus
vv       AMP PEAK 15(11P13) MUTATED AMP PEAK 15(11P13) WILD-TYPE
  CLUS_1                         44                          104
  CLUS_2                         26                          108
  CLUS_3                         27                           90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 15(11P13) MUTATED        7     12     28     11     31      8
  AMP PEAK 15(11P13) WILD-TYPE     57     34     62     41     85     23
D15V6, multiclass
        clus
vv       AMP PEAK 15(11P13) MUTATED AMP PEAK 15(11P13) WILD-TYPE
  CLUS_1                          7                           57
  CLUS_2                         12                           34
  CLUS_3                         28                           62
  CLUS_4                         11                           41
  CLUS_5                         31                           85
  CLUS_6                          8                           23
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(11P13) MUTATED      115     89     18
  AMP PEAK 15(11P13) WILD-TYPE    444    215    194
D15V7, multiclass
        clus
vv       AMP PEAK 15(11P13) MUTATED AMP PEAK 15(11P13) WILD-TYPE
  CLUS_1                        115                          444
  CLUS_2                         89                          215
  CLUS_3                         18                          194
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 15(11P13) MUTATED       58     44      7     44     59     10
  AMP PEAK 15(11P13) WILD-TYPE    231    119     83    246    124     50
D15V8, multiclass
        clus
vv       AMP PEAK 15(11P13) MUTATED AMP PEAK 15(11P13) WILD-TYPE
  CLUS_1                         58                          231
  CLUS_2                         44                          119
  CLUS_3                          7                           83
  CLUS_4                         44                          246
  CLUS_5                         59                          124
  CLUS_6                         10                           50
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(11P13) MUTATED      100     16     47     57
  AMP PEAK 15(11P13) WILD-TYPE    205    196    222    218
D15V9, multiclass
        clus
vv       AMP PEAK 15(11P13) MUTATED AMP PEAK 15(11P13) WILD-TYPE
  CLUS_1                        100                          205
  CLUS_2                         16                          196
  CLUS_3                         47                          222
  CLUS_4                         57                          218
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 15(11P13) MUTATED       80     48     20     20     14     38
  AMP PEAK 15(11P13) WILD-TYPE    214    104    225    120     82     96
D15V10, multiclass
        clus
vv       AMP PEAK 15(11P13) MUTATED AMP PEAK 15(11P13) WILD-TYPE
  CLUS_1                         80                          214
  CLUS_2                         48                          104
  CLUS_3                         20                          225
  CLUS_4                         20                          120
  CLUS_5                         14                           82
  CLUS_6                         38                           96
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(11P13) MUTATED       41     42     12     16     14
  AMP PEAK 15(11P13) WILD-TYPE    139     97     87     95    119
D15V11, multiclass
        clus
vv       AMP PEAK 15(11P13) MUTATED AMP PEAK 15(11P13) WILD-TYPE
  CLUS_1                         41                          139
  CLUS_2                         42                           97
  CLUS_3                         12                           87
  CLUS_4                         16                           95
  CLUS_5                         14                          119
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(11P13) MUTATED       79     29     17
  AMP PEAK 15(11P13) WILD-TYPE    226    218     93
D15V12, multiclass
        clus
vv       AMP PEAK 15(11P13) MUTATED AMP PEAK 15(11P13) WILD-TYPE
  CLUS_1                         79                          226
  CLUS_2                         29                          218
  CLUS_3                         17                           93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = AMP PEAK 16(11Q13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 16(11Q13.3) MUTATED       13     18     62     28     33     37
  AMP PEAK 16(11Q13.3) WILD-TYPE      8     18     57     68     76     35
                                vv
clus                             CLUS_7 CLUS_8
  AMP PEAK 16(11Q13.3) MUTATED       11     13
  AMP PEAK 16(11Q13.3) WILD-TYPE      9     27
D16V1, multiclass
        clus
vv       AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE
  CLUS_1                           13                              8
  CLUS_2                           18                             18
  CLUS_3                           62                             57
  CLUS_4                           28                             68
  CLUS_5                           33                             76
  CLUS_6                           37                             35
  CLUS_7                           11                              9
  CLUS_8                           13                             27
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(11Q13.3) MUTATED       55     57     68     24     11
  AMP PEAK 16(11Q13.3) WILD-TYPE     46     95     46     64     47
D16V2, multiclass
        clus
vv       AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE
  CLUS_1                           55                             46
  CLUS_2                           57                             95
  CLUS_3                           68                             46
  CLUS_4                           24                             64
  CLUS_5                           11                             47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(11Q13.3) MUTATED      201     55     31     97     14
  AMP PEAK 16(11Q13.3) WILD-TYPE     74    352     67    160     29
D16V3, multiclass
        clus
vv       AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE
  CLUS_1                          201                             74
  CLUS_2                           55                            352
  CLUS_3                           31                             67
  CLUS_4                           97                            160
  CLUS_5                           14                             29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 16(11Q13.3) MUTATED       82     56     41     24     43     15
  AMP PEAK 16(11Q13.3) WILD-TYPE     71     57    136    107     85     40
D16V4, multiclass
        clus
vv       AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE
  CLUS_1                           82                             71
  CLUS_2                           56                             57
  CLUS_3                           41                            136
  CLUS_4                           24                            107
  CLUS_5                           43                             85
  CLUS_6                           15                             40
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(11Q13.3) MUTATED       61     58     50
  AMP PEAK 16(11Q13.3) WILD-TYPE     87     76     67
D16V5, multiclass
        clus
vv       AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE
  CLUS_1                           61                             87
  CLUS_2                           58                             76
  CLUS_3                           50                             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 16(11Q13.3) MUTATED       17     20     29     23     67     13
  AMP PEAK 16(11Q13.3) WILD-TYPE     47     26     61     29     49     18
D16V6, multiclass
        clus
vv       AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE
  CLUS_1                           17                             47
  CLUS_2                           20                             26
  CLUS_3                           29                             61
  CLUS_4                           23                             29
  CLUS_5                           67                             49
  CLUS_6                           13                             18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(11Q13.3) MUTATED      231    112     54
  AMP PEAK 16(11Q13.3) WILD-TYPE    328    192    158
D16V7, multiclass
        clus
vv       AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE
  CLUS_1                          231                            328
  CLUS_2                          112                            192
  CLUS_3                           54                            158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 16(11Q13.3) MUTATED      120     82     19     97     58     21
  AMP PEAK 16(11Q13.3) WILD-TYPE    169     81     71    193    125     39
D16V8, multiclass
        clus
vv       AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE
  CLUS_1                          120                            169
  CLUS_2                           82                             81
  CLUS_3                           19                             71
  CLUS_4                           97                            193
  CLUS_5                           58                            125
  CLUS_6                           21                             39
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(11Q13.3) MUTATED      123     51    102    114
  AMP PEAK 16(11Q13.3) WILD-TYPE    182    161    167    161
D16V9, multiclass
        clus
vv       AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE
  CLUS_1                          123                            182
  CLUS_2                           51                            161
  CLUS_3                          102                            167
  CLUS_4                          114                            161
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 16(11Q13.3) MUTATED      134     63     68     50     33     42
  AMP PEAK 16(11Q13.3) WILD-TYPE    160     89    177     90     63     92
D16V10, multiclass
        clus
vv       AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE
  CLUS_1                          134                            160
  CLUS_2                           63                             89
  CLUS_3                           68                            177
  CLUS_4                           50                             90
  CLUS_5                           33                             63
  CLUS_6                           42                             92
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(11Q13.3) MUTATED       76     48     29     26     49
  AMP PEAK 16(11Q13.3) WILD-TYPE    104     91     70     85     84
D16V11, multiclass
        clus
vv       AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE
  CLUS_1                           76                            104
  CLUS_2                           48                             91
  CLUS_3                           29                             70
  CLUS_4                           26                             85
  CLUS_5                           49                             84
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(11Q13.3) MUTATED      123     77     28
  AMP PEAK 16(11Q13.3) WILD-TYPE    182    170     82
D16V12, multiclass
        clus
vv       AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE
  CLUS_1                          123                            182
  CLUS_2                           77                            170
  CLUS_3                           28                             82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = AMP PEAK 17(11Q14.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 17(11Q14.1) MUTATED       11     11     32     33     23     25
  AMP PEAK 17(11Q14.1) WILD-TYPE     10     25     87     63     86     47
                                vv
clus                             CLUS_7 CLUS_8
  AMP PEAK 17(11Q14.1) MUTATED        7      4
  AMP PEAK 17(11Q14.1) WILD-TYPE     13     36
D17V1, multiclass
        clus
vv       AMP PEAK 17(11Q14.1) MUTATED AMP PEAK 17(11Q14.1) WILD-TYPE
  CLUS_1                           11                             10
  CLUS_2                           11                             25
  CLUS_3                           32                             87
  CLUS_4                           33                             63
  CLUS_5                           23                             86
  CLUS_6                           25                             47
  CLUS_7                            7                             13
  CLUS_8                            4                             36
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(11Q14.1) MUTATED       30     36     45     30      5
  AMP PEAK 17(11Q14.1) WILD-TYPE     71    116     69     58     53
D17V2, multiclass
        clus
vv       AMP PEAK 17(11Q14.1) MUTATED AMP PEAK 17(11Q14.1) WILD-TYPE
  CLUS_1                           30                             71
  CLUS_2                           36                            116
  CLUS_3                           45                             69
  CLUS_4                           30                             58
  CLUS_5                            5                             53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(11Q14.1) MUTATED      111     30     22     96      8
  AMP PEAK 17(11Q14.1) WILD-TYPE    164    377     76    161     35
D17V3, multiclass
        clus
vv       AMP PEAK 17(11Q14.1) MUTATED AMP PEAK 17(11Q14.1) WILD-TYPE
  CLUS_1                          111                            164
  CLUS_2                           30                            377
  CLUS_3                           22                             76
  CLUS_4                           96                            161
  CLUS_5                            8                             35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 17(11Q14.1) MUTATED       36     38     24     17     42     12
  AMP PEAK 17(11Q14.1) WILD-TYPE    117     75    153    114     86     43
D17V4, multiclass
        clus
vv       AMP PEAK 17(11Q14.1) MUTATED AMP PEAK 17(11Q14.1) WILD-TYPE
  CLUS_1                           36                            117
  CLUS_2                           38                             75
  CLUS_3                           24                            153
  CLUS_4                           17                            114
  CLUS_5                           42                             86
  CLUS_6                           12                             43
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(11Q14.1) MUTATED       51     32     34
  AMP PEAK 17(11Q14.1) WILD-TYPE     97    102     83
D17V5, multiclass
        clus
vv       AMP PEAK 17(11Q14.1) MUTATED AMP PEAK 17(11Q14.1) WILD-TYPE
  CLUS_1                           51                             97
  CLUS_2                           32                            102
  CLUS_3                           34                             83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 17(11Q14.1) MUTATED       13     14     31     15     32     12
  AMP PEAK 17(11Q14.1) WILD-TYPE     51     32     59     37     84     19
D17V6, multiclass
        clus
vv       AMP PEAK 17(11Q14.1) MUTATED AMP PEAK 17(11Q14.1) WILD-TYPE
  CLUS_1                           13                             51
  CLUS_2                           14                             32
  CLUS_3                           31                             59
  CLUS_4                           15                             37
  CLUS_5                           32                             84
  CLUS_6                           12                             19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(11Q14.1) MUTATED      133    102     31
  AMP PEAK 17(11Q14.1) WILD-TYPE    426    202    181
D17V7, multiclass
        clus
vv       AMP PEAK 17(11Q14.1) MUTATED AMP PEAK 17(11Q14.1) WILD-TYPE
  CLUS_1                          133                            426
  CLUS_2                          102                            202
  CLUS_3                           31                            181
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 17(11Q14.1) MUTATED       63     55     10     59     61     18
  AMP PEAK 17(11Q14.1) WILD-TYPE    226    108     80    231    122     42
D17V8, multiclass
        clus
vv       AMP PEAK 17(11Q14.1) MUTATED AMP PEAK 17(11Q14.1) WILD-TYPE
  CLUS_1                           63                            226
  CLUS_2                           55                            108
  CLUS_3                           10                             80
  CLUS_4                           59                            231
  CLUS_5                           61                            122
  CLUS_6                           18                             42
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(11Q14.1) MUTATED      111     27     54     69
  AMP PEAK 17(11Q14.1) WILD-TYPE    194    185    215    206
D17V9, multiclass
        clus
vv       AMP PEAK 17(11Q14.1) MUTATED AMP PEAK 17(11Q14.1) WILD-TYPE
  CLUS_1                          111                            194
  CLUS_2                           27                            185
  CLUS_3                           54                            215
  CLUS_4                           69                            206
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 17(11Q14.1) MUTATED       79     48     36     31     20     47
  AMP PEAK 17(11Q14.1) WILD-TYPE    215    104    209    109     76     87
D17V10, multiclass
        clus
vv       AMP PEAK 17(11Q14.1) MUTATED AMP PEAK 17(11Q14.1) WILD-TYPE
  CLUS_1                           79                            215
  CLUS_2                           48                            104
  CLUS_3                           36                            209
  CLUS_4                           31                            109
  CLUS_5                           20                             76
  CLUS_6                           47                             87
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(11Q14.1) MUTATED       44     41     21     15     25
  AMP PEAK 17(11Q14.1) WILD-TYPE    136     98     78     96    108
D17V11, multiclass
        clus
vv       AMP PEAK 17(11Q14.1) MUTATED AMP PEAK 17(11Q14.1) WILD-TYPE
  CLUS_1                           44                            136
  CLUS_2                           41                             98
  CLUS_3                           21                             78
  CLUS_4                           15                             96
  CLUS_5                           25                            108
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(11Q14.1) MUTATED       82     42     22
  AMP PEAK 17(11Q14.1) WILD-TYPE    223    205     88
D17V12, multiclass
        clus
vv       AMP PEAK 17(11Q14.1) MUTATED AMP PEAK 17(11Q14.1) WILD-TYPE
  CLUS_1                           82                            223
  CLUS_2                           42                            205
  CLUS_3                           22                             88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = AMP PEAK 18(12P13.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 18(12P13.33) MUTATED        3      4     36     53     18     29
  AMP PEAK 18(12P13.33) WILD-TYPE     18     32     83     43     91     43
                                 vv
clus                              CLUS_7 CLUS_8
  AMP PEAK 18(12P13.33) MUTATED        3      3
  AMP PEAK 18(12P13.33) WILD-TYPE     17     37
D18V1, multiclass
        clus
vv       AMP PEAK 18(12P13.33) MUTATED AMP PEAK 18(12P13.33) WILD-TYPE
  CLUS_1                             3                              18
  CLUS_2                             4                              32
  CLUS_3                            36                              83
  CLUS_4                            53                              43
  CLUS_5                            18                              91
  CLUS_6                            29                              43
  CLUS_7                             3                              17
  CLUS_8                             3                              37
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(12P13.33) MUTATED       30     16     44     49     10
  AMP PEAK 18(12P13.33) WILD-TYPE     71    136     70     39     48
D18V2, multiclass
        clus
vv       AMP PEAK 18(12P13.33) MUTATED AMP PEAK 18(12P13.33) WILD-TYPE
  CLUS_1                            30                              71
  CLUS_2                            16                             136
  CLUS_3                            44                              70
  CLUS_4                            49                              39
  CLUS_5                            10                              48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(12P13.33) MUTATED       89     22     28    132     11
  AMP PEAK 18(12P13.33) WILD-TYPE    186    385     70    125     32
D18V3, multiclass
        clus
vv       AMP PEAK 18(12P13.33) MUTATED AMP PEAK 18(12P13.33) WILD-TYPE
  CLUS_1                            89                             186
  CLUS_2                            22                             385
  CLUS_3                            28                              70
  CLUS_4                           132                             125
  CLUS_5                            11                              32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 18(12P13.33) MUTATED       51     25     17     16     69      3
  AMP PEAK 18(12P13.33) WILD-TYPE    102     88    160    115     59     52
D18V4, multiclass
        clus
vv       AMP PEAK 18(12P13.33) MUTATED AMP PEAK 18(12P13.33) WILD-TYPE
  CLUS_1                            51                             102
  CLUS_2                            25                              88
  CLUS_3                            17                             160
  CLUS_4                            16                             115
  CLUS_5                            69                              59
  CLUS_6                             3                              52
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(12P13.33) MUTATED       70     32     19
  AMP PEAK 18(12P13.33) WILD-TYPE     78    102     98
D18V5, multiclass
        clus
vv       AMP PEAK 18(12P13.33) MUTATED AMP PEAK 18(12P13.33) WILD-TYPE
  CLUS_1                            70                              78
  CLUS_2                            32                             102
  CLUS_3                            19                              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 18(12P13.33) MUTATED       15      8     47      6     35     10
  AMP PEAK 18(12P13.33) WILD-TYPE     49     38     43     46     81     21
D18V6, multiclass
        clus
vv       AMP PEAK 18(12P13.33) MUTATED AMP PEAK 18(12P13.33) WILD-TYPE
  CLUS_1                            15                              49
  CLUS_2                             8                              38
  CLUS_3                            47                              43
  CLUS_4                             6                              46
  CLUS_5                            35                              81
  CLUS_6                            10                              21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(12P13.33) MUTATED      125    137     19
  AMP PEAK 18(12P13.33) WILD-TYPE    434    167    193
D18V7, multiclass
        clus
vv       AMP PEAK 18(12P13.33) MUTATED AMP PEAK 18(12P13.33) WILD-TYPE
  CLUS_1                           125                             434
  CLUS_2                           137                             167
  CLUS_3                            19                             193
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 18(12P13.33) MUTATED       63     57      7     37    102     15
  AMP PEAK 18(12P13.33) WILD-TYPE    226    106     83    253     81     45
D18V8, multiclass
        clus
vv       AMP PEAK 18(12P13.33) MUTATED AMP PEAK 18(12P13.33) WILD-TYPE
  CLUS_1                            63                             226
  CLUS_2                            57                             106
  CLUS_3                             7                              83
  CLUS_4                            37                             253
  CLUS_5                           102                              81
  CLUS_6                            15                              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(12P13.33) MUTATED      150     19     55     49
  AMP PEAK 18(12P13.33) WILD-TYPE    155    193    214    226
D18V9, multiclass
        clus
vv       AMP PEAK 18(12P13.33) MUTATED AMP PEAK 18(12P13.33) WILD-TYPE
  CLUS_1                           150                             155
  CLUS_2                            19                             193
  CLUS_3                            55                             214
  CLUS_4                            49                             226
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 18(12P13.33) MUTATED       75     48     33     25     15     77
  AMP PEAK 18(12P13.33) WILD-TYPE    219    104    212    115     81     57
D18V10, multiclass
        clus
vv       AMP PEAK 18(12P13.33) MUTATED AMP PEAK 18(12P13.33) WILD-TYPE
  CLUS_1                            75                             219
  CLUS_2                            48                             104
  CLUS_3                            33                             212
  CLUS_4                            25                             115
  CLUS_5                            15                              81
  CLUS_6                            77                              57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(12P13.33) MUTATED       39     68     15     12     24
  AMP PEAK 18(12P13.33) WILD-TYPE    141     71     84     99    109
D18V11, multiclass
        clus
vv       AMP PEAK 18(12P13.33) MUTATED AMP PEAK 18(12P13.33) WILD-TYPE
  CLUS_1                            39                             141
  CLUS_2                            68                              71
  CLUS_3                            15                              84
  CLUS_4                            12                              99
  CLUS_5                            24                             109
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(12P13.33) MUTATED       99     44     15
  AMP PEAK 18(12P13.33) WILD-TYPE    206    203     95
D18V12, multiclass
        clus
vv       AMP PEAK 18(12P13.33) MUTATED AMP PEAK 18(12P13.33) WILD-TYPE
  CLUS_1                            99                             206
  CLUS_2                            44                             203
  CLUS_3                            15                              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = AMP PEAK 19(12Q15) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 19(12Q15) MUTATED        4      6     54     21     20     35      7
  AMP PEAK 19(12Q15) WILD-TYPE     17     30     65     75     89     37     13
                              vv
clus                           CLUS_8
  AMP PEAK 19(12Q15) MUTATED        6
  AMP PEAK 19(12Q15) WILD-TYPE     34
D19V1, multiclass
        clus
vv       AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  CLUS_1                          4                           17
  CLUS_2                          6                           30
  CLUS_3                         54                           65
  CLUS_4                         21                           75
  CLUS_5                         20                           89
  CLUS_6                         35                           37
  CLUS_7                          7                           13
  CLUS_8                          6                           34
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(12Q15) MUTATED       43     24     56     18     12
  AMP PEAK 19(12Q15) WILD-TYPE     58    128     58     70     46
D19V2, multiclass
        clus
vv       AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  CLUS_1                         43                           58
  CLUS_2                         24                          128
  CLUS_3                         56                           58
  CLUS_4                         18                           70
  CLUS_5                         12                           46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(12Q15) MUTATED      141     29     30     66     10
  AMP PEAK 19(12Q15) WILD-TYPE    134    378     68    191     33
D19V3, multiclass
        clus
vv       AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  CLUS_1                        141                          134
  CLUS_2                         29                          378
  CLUS_3                         30                           68
  CLUS_4                         66                          191
  CLUS_5                         10                           33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 19(12Q15) MUTATED       77     28     24     16     21      8
  AMP PEAK 19(12Q15) WILD-TYPE     76     85    153    115    107     47
D19V4, multiclass
        clus
vv       AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  CLUS_1                         77                           76
  CLUS_2                         28                           85
  CLUS_3                         24                          153
  CLUS_4                         16                          115
  CLUS_5                         21                          107
  CLUS_6                          8                           47
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(12Q15) MUTATED       52     43     31
  AMP PEAK 19(12Q15) WILD-TYPE     96     91     86
D19V5, multiclass
        clus
vv       AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  CLUS_1                         52                           96
  CLUS_2                         43                           91
  CLUS_3                         31                           86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 19(12Q15) MUTATED       17     14     24      9     50     12
  AMP PEAK 19(12Q15) WILD-TYPE     47     32     66     43     66     19
D19V6, multiclass
        clus
vv       AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  CLUS_1                         17                           47
  CLUS_2                         14                           32
  CLUS_3                         24                           66
  CLUS_4                          9                           43
  CLUS_5                         50                           66
  CLUS_6                         12                           19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(12Q15) MUTATED      182     68     25
  AMP PEAK 19(12Q15) WILD-TYPE    377    236    187
D19V7, multiclass
        clus
vv       AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  CLUS_1                        182                          377
  CLUS_2                         68                          236
  CLUS_3                         25                          187
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 19(12Q15) MUTATED       92     79      7     55     30     12
  AMP PEAK 19(12Q15) WILD-TYPE    197     84     83    235    153     48
D19V8, multiclass
        clus
vv       AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  CLUS_1                         92                          197
  CLUS_2                         79                           84
  CLUS_3                          7                           83
  CLUS_4                         55                          235
  CLUS_5                         30                          153
  CLUS_6                         12                           48
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(12Q15) MUTATED       90     21     68     91
  AMP PEAK 19(12Q15) WILD-TYPE    215    191    201    184
D19V9, multiclass
        clus
vv       AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  CLUS_1                         90                          215
  CLUS_2                         21                          191
  CLUS_3                         68                          201
  CLUS_4                         91                          184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 19(12Q15) MUTATED      110     40     42     33     23     22
  AMP PEAK 19(12Q15) WILD-TYPE    184    112    203    107     73    112
D19V10, multiclass
        clus
vv       AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  CLUS_1                        110                          184
  CLUS_2                         40                          112
  CLUS_3                         42                          203
  CLUS_4                         33                          107
  CLUS_5                         23                           73
  CLUS_6                         22                          112
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(12Q15) MUTATED       65     24     23     14     28
  AMP PEAK 19(12Q15) WILD-TYPE    115    115     76     97    105
D19V11, multiclass
        clus
vv       AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  CLUS_1                         65                          115
  CLUS_2                         24                          115
  CLUS_3                         23                           76
  CLUS_4                         14                           97
  CLUS_5                         28                          105
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(12Q15) MUTATED       80     48     26
  AMP PEAK 19(12Q15) WILD-TYPE    225    199     84
D19V12, multiclass
        clus
vv       AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  CLUS_1                         80                          225
  CLUS_2                         48                          199
  CLUS_3                         26                           84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = AMP PEAK 20(13Q34) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 20(13Q34) MUTATED        3      5     19     43     16     10      4
  AMP PEAK 20(13Q34) WILD-TYPE     18     31    100     53     93     62     16
                              vv
clus                           CLUS_8
  AMP PEAK 20(13Q34) MUTATED        0
  AMP PEAK 20(13Q34) WILD-TYPE     40
D20V1, multiclass
        clus
vv       AMP PEAK 20(13Q34) MUTATED AMP PEAK 20(13Q34) WILD-TYPE
  CLUS_1                          3                           18
  CLUS_2                          5                           31
  CLUS_3                         19                          100
  CLUS_4                         43                           53
  CLUS_5                         16                           93
  CLUS_6                         10                           62
  CLUS_7                          4                           16
  CLUS_8                          0                           40
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(13Q34) MUTATED       17     14     23     38      8
  AMP PEAK 20(13Q34) WILD-TYPE     84    138     91     50     50
D20V2, multiclass
        clus
vv       AMP PEAK 20(13Q34) MUTATED AMP PEAK 20(13Q34) WILD-TYPE
  CLUS_1                         17                           84
  CLUS_2                         14                          138
  CLUS_3                         23                           91
  CLUS_4                         38                           50
  CLUS_5                          8                           50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(13Q34) MUTATED       41     25     13     95      5
  AMP PEAK 20(13Q34) WILD-TYPE    234    382     85    162     38
D20V3, multiclass
        clus
vv       AMP PEAK 20(13Q34) MUTATED AMP PEAK 20(13Q34) WILD-TYPE
  CLUS_1                         41                          234
  CLUS_2                         25                          382
  CLUS_3                         13                           85
  CLUS_4                         95                          162
  CLUS_5                          5                           38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 20(13Q34) MUTATED       22     16     10     13     50      2
  AMP PEAK 20(13Q34) WILD-TYPE    131     97    167    118     78     53
D20V4, multiclass
        clus
vv       AMP PEAK 20(13Q34) MUTATED AMP PEAK 20(13Q34) WILD-TYPE
  CLUS_1                         22                          131
  CLUS_2                         16                           97
  CLUS_3                         10                          167
  CLUS_4                         13                          118
  CLUS_5                         50                           78
  CLUS_6                          2                           53
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(13Q34) MUTATED       49     23     12
  AMP PEAK 20(13Q34) WILD-TYPE     99    111    105
D20V5, multiclass
        clus
vv       AMP PEAK 20(13Q34) MUTATED AMP PEAK 20(13Q34) WILD-TYPE
  CLUS_1                         49                           99
  CLUS_2                         23                          111
  CLUS_3                         12                          105
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 20(13Q34) MUTATED       10      6     39      3     17      9
  AMP PEAK 20(13Q34) WILD-TYPE     54     40     51     49     99     22
D20V6, multiclass
        clus
vv       AMP PEAK 20(13Q34) MUTATED AMP PEAK 20(13Q34) WILD-TYPE
  CLUS_1                         10                           54
  CLUS_2                          6                           40
  CLUS_3                         39                           51
  CLUS_4                          3                           49
  CLUS_5                         17                           99
  CLUS_6                          9                           22
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(13Q34) MUTATED       68     99     12
  AMP PEAK 20(13Q34) WILD-TYPE    491    205    200
D20V7, multiclass
        clus
vv       AMP PEAK 20(13Q34) MUTATED AMP PEAK 20(13Q34) WILD-TYPE
  CLUS_1                         68                          491
  CLUS_2                         99                          205
  CLUS_3                         12                          200
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 20(13Q34) MUTATED       34     22      3     28     74     18
  AMP PEAK 20(13Q34) WILD-TYPE    255    141     87    262    109     42
D20V8, multiclass
        clus
vv       AMP PEAK 20(13Q34) MUTATED AMP PEAK 20(13Q34) WILD-TYPE
  CLUS_1                         34                          255
  CLUS_2                         22                          141
  CLUS_3                          3                           87
  CLUS_4                         28                          262
  CLUS_5                         74                          109
  CLUS_6                         18                           42
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(13Q34) MUTATED      104     15     29     28
  AMP PEAK 20(13Q34) WILD-TYPE    201    197    240    247
D20V9, multiclass
        clus
vv       AMP PEAK 20(13Q34) MUTATED AMP PEAK 20(13Q34) WILD-TYPE
  CLUS_1                        104                          201
  CLUS_2                         15                          197
  CLUS_3                         29                          240
  CLUS_4                         28                          247
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 20(13Q34) MUTATED       42     39     19     10     10     56
  AMP PEAK 20(13Q34) WILD-TYPE    252    113    226    130     86     78
D20V10, multiclass
        clus
vv       AMP PEAK 20(13Q34) MUTATED AMP PEAK 20(13Q34) WILD-TYPE
  CLUS_1                         42                          252
  CLUS_2                         39                          113
  CLUS_3                         19                          226
  CLUS_4                         10                          130
  CLUS_5                         10                           86
  CLUS_6                         56                           78
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(13Q34) MUTATED       19     47      6      8     17
  AMP PEAK 20(13Q34) WILD-TYPE    161     92     93    103    116
D20V11, multiclass
        clus
vv       AMP PEAK 20(13Q34) MUTATED AMP PEAK 20(13Q34) WILD-TYPE
  CLUS_1                         19                          161
  CLUS_2                         47                           92
  CLUS_3                          6                           93
  CLUS_4                          8                          103
  CLUS_5                         17                          116
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(13Q34) MUTATED       66     23      8
  AMP PEAK 20(13Q34) WILD-TYPE    239    224    102
D20V12, multiclass
        clus
vv       AMP PEAK 20(13Q34) MUTATED AMP PEAK 20(13Q34) WILD-TYPE
  CLUS_1                         66                          239
  CLUS_2                         23                          224
  CLUS_3                          8                          102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = AMP PEAK 21(14Q21.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 21(14Q21.1) MUTATED        5      9     33     11     21     26
  AMP PEAK 21(14Q21.1) WILD-TYPE     16     27     86     85     88     46
                                vv
clus                             CLUS_7 CLUS_8
  AMP PEAK 21(14Q21.1) MUTATED        6      0
  AMP PEAK 21(14Q21.1) WILD-TYPE     14     40
D21V1, multiclass
        clus
vv       AMP PEAK 21(14Q21.1) MUTATED AMP PEAK 21(14Q21.1) WILD-TYPE
  CLUS_1                            5                             16
  CLUS_2                            9                             27
  CLUS_3                           33                             86
  CLUS_4                           11                             85
  CLUS_5                           21                             88
  CLUS_6                           26                             46
  CLUS_7                            6                             14
  CLUS_8                            0                             40
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(14Q21.1) MUTATED       29     24     42      8      8
  AMP PEAK 21(14Q21.1) WILD-TYPE     72    128     72     80     50
D21V2, multiclass
        clus
vv       AMP PEAK 21(14Q21.1) MUTATED AMP PEAK 21(14Q21.1) WILD-TYPE
  CLUS_1                           29                             72
  CLUS_2                           24                            128
  CLUS_3                           42                             72
  CLUS_4                            8                             80
  CLUS_5                            8                             50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(14Q21.1) MUTATED      102     39     22     49      8
  AMP PEAK 21(14Q21.1) WILD-TYPE    173    368     76    208     35
D21V3, multiclass
        clus
vv       AMP PEAK 21(14Q21.1) MUTATED AMP PEAK 21(14Q21.1) WILD-TYPE
  CLUS_1                          102                            173
  CLUS_2                           39                            368
  CLUS_3                           22                             76
  CLUS_4                           49                            208
  CLUS_5                            8                             35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 21(14Q21.1) MUTATED       49     31     25     13     17      4
  AMP PEAK 21(14Q21.1) WILD-TYPE    104     82    152    118    111     51
D21V4, multiclass
        clus
vv       AMP PEAK 21(14Q21.1) MUTATED AMP PEAK 21(14Q21.1) WILD-TYPE
  CLUS_1                           49                            104
  CLUS_2                           31                             82
  CLUS_3                           25                            152
  CLUS_4                           13                            118
  CLUS_5                           17                            111
  CLUS_6                            4                             51
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(14Q21.1) MUTATED       41     25     21
  AMP PEAK 21(14Q21.1) WILD-TYPE    107    109     96
D21V5, multiclass
        clus
vv       AMP PEAK 21(14Q21.1) MUTATED AMP PEAK 21(14Q21.1) WILD-TYPE
  CLUS_1                           41                            107
  CLUS_2                           25                            109
  CLUS_3                           21                             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 21(14Q21.1) MUTATED       11      6     14      8     39      9
  AMP PEAK 21(14Q21.1) WILD-TYPE     53     40     76     44     77     22
D21V6, multiclass
        clus
vv       AMP PEAK 21(14Q21.1) MUTATED AMP PEAK 21(14Q21.1) WILD-TYPE
  CLUS_1                           11                             53
  CLUS_2                            6                             40
  CLUS_3                           14                             76
  CLUS_4                            8                             44
  CLUS_5                           39                             77
  CLUS_6                            9                             22
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(14Q21.1) MUTATED      148     53     18
  AMP PEAK 21(14Q21.1) WILD-TYPE    411    251    194
D21V7, multiclass
        clus
vv       AMP PEAK 21(14Q21.1) MUTATED AMP PEAK 21(14Q21.1) WILD-TYPE
  CLUS_1                          148                            411
  CLUS_2                           53                            251
  CLUS_3                           18                            194
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 21(14Q21.1) MUTATED       62     71      7     45     17     17
  AMP PEAK 21(14Q21.1) WILD-TYPE    227     92     83    245    166     43
D21V8, multiclass
        clus
vv       AMP PEAK 21(14Q21.1) MUTATED AMP PEAK 21(14Q21.1) WILD-TYPE
  CLUS_1                           62                            227
  CLUS_2                           71                             92
  CLUS_3                            7                             83
  CLUS_4                           45                            245
  CLUS_5                           17                            166
  CLUS_6                           17                             43
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(14Q21.1) MUTATED       69     15     59     71
  AMP PEAK 21(14Q21.1) WILD-TYPE    236    197    210    204
D21V9, multiclass
        clus
vv       AMP PEAK 21(14Q21.1) MUTATED AMP PEAK 21(14Q21.1) WILD-TYPE
  CLUS_1                           69                            236
  CLUS_2                           15                            197
  CLUS_3                           59                            210
  CLUS_4                           71                            204
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 21(14Q21.1) MUTATED       95     44     28     26     10     11
  AMP PEAK 21(14Q21.1) WILD-TYPE    199    108    217    114     86    123
D21V10, multiclass
        clus
vv       AMP PEAK 21(14Q21.1) MUTATED AMP PEAK 21(14Q21.1) WILD-TYPE
  CLUS_1                           95                            199
  CLUS_2                           44                            108
  CLUS_3                           28                            217
  CLUS_4                           26                            114
  CLUS_5                           10                             86
  CLUS_6                           11                            123
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(14Q21.1) MUTATED       51     20     23     14     24
  AMP PEAK 21(14Q21.1) WILD-TYPE    129    119     76     97    109
D21V11, multiclass
        clus
vv       AMP PEAK 21(14Q21.1) MUTATED AMP PEAK 21(14Q21.1) WILD-TYPE
  CLUS_1                           51                            129
  CLUS_2                           20                            119
  CLUS_3                           23                             76
  CLUS_4                           14                             97
  CLUS_5                           24                            109
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(14Q21.1) MUTATED       64     45     23
  AMP PEAK 21(14Q21.1) WILD-TYPE    241    202     87
D21V12, multiclass
        clus
vv       AMP PEAK 21(14Q21.1) MUTATED AMP PEAK 21(14Q21.1) WILD-TYPE
  CLUS_1                           64                            241
  CLUS_2                           45                            202
  CLUS_3                           23                             87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = AMP PEAK 22(15Q26.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 22(15Q26.3) MUTATED        3      8     31     32      4     16
  AMP PEAK 22(15Q26.3) WILD-TYPE     18     28     88     64    105     56
                                vv
clus                             CLUS_7 CLUS_8
  AMP PEAK 22(15Q26.3) MUTATED        8      2
  AMP PEAK 22(15Q26.3) WILD-TYPE     12     38
D22V1, multiclass
        clus
vv       AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  CLUS_1                            3                             18
  CLUS_2                            8                             28
  CLUS_3                           31                             88
  CLUS_4                           32                             64
  CLUS_5                            4                            105
  CLUS_6                           16                             56
  CLUS_7                            8                             12
  CLUS_8                            2                             38
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 22(15Q26.3) MUTATED       23     23     25     30      3
  AMP PEAK 22(15Q26.3) WILD-TYPE     78    129     89     58     55
D22V2, multiclass
        clus
vv       AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  CLUS_1                           23                             78
  CLUS_2                           23                            129
  CLUS_3                           25                             89
  CLUS_4                           30                             58
  CLUS_5                            3                             55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 22(15Q26.3) MUTATED       67     31      6     87      3
  AMP PEAK 22(15Q26.3) WILD-TYPE    208    376     92    170     40
D22V3, multiclass
        clus
vv       AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  CLUS_1                           67                            208
  CLUS_2                           31                            376
  CLUS_3                            6                             92
  CLUS_4                           87                            170
  CLUS_5                            3                             40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 22(15Q26.3) MUTATED       33     14     13     17     35      8
  AMP PEAK 22(15Q26.3) WILD-TYPE    120     99    164    114     93     47
D22V4, multiclass
        clus
vv       AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  CLUS_1                           33                            120
  CLUS_2                           14                             99
  CLUS_3                           13                            164
  CLUS_4                           17                            114
  CLUS_5                           35                             93
  CLUS_6                            8                             47
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(15Q26.3) MUTATED       45     20     18
  AMP PEAK 22(15Q26.3) WILD-TYPE    103    114     99
D22V5, multiclass
        clus
vv       AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  CLUS_1                           45                            103
  CLUS_2                           20                            114
  CLUS_3                           18                             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 22(15Q26.3) MUTATED        9      9     30      5     26      4
  AMP PEAK 22(15Q26.3) WILD-TYPE     55     37     60     47     90     27
D22V6, multiclass
        clus
vv       AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  CLUS_1                            9                             55
  CLUS_2                            9                             37
  CLUS_3                           30                             60
  CLUS_4                            5                             47
  CLUS_5                           26                             90
  CLUS_6                            4                             27
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(15Q26.3) MUTATED       93     83     17
  AMP PEAK 22(15Q26.3) WILD-TYPE    466    221    195
D22V7, multiclass
        clus
vv       AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  CLUS_1                           93                            466
  CLUS_2                           83                            221
  CLUS_3                           17                            195
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 22(15Q26.3) MUTATED       52     33      6     34     62      6
  AMP PEAK 22(15Q26.3) WILD-TYPE    237    130     84    256    121     54
D22V8, multiclass
        clus
vv       AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  CLUS_1                           52                            237
  CLUS_2                           33                            130
  CLUS_3                            6                             84
  CLUS_4                           34                            256
  CLUS_5                           62                            121
  CLUS_6                            6                             54
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(15Q26.3) MUTATED       88     19     33     47
  AMP PEAK 22(15Q26.3) WILD-TYPE    217    193    236    228
D22V9, multiclass
        clus
vv       AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  CLUS_1                           88                            217
  CLUS_2                           19                            193
  CLUS_3                           33                            236
  CLUS_4                           47                            228
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 22(15Q26.3) MUTATED       56     41     20     13     14     43
  AMP PEAK 22(15Q26.3) WILD-TYPE    238    111    225    127     82     91
D22V10, multiclass
        clus
vv       AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  CLUS_1                           56                            238
  CLUS_2                           41                            111
  CLUS_3                           20                            225
  CLUS_4                           13                            127
  CLUS_5                           14                             82
  CLUS_6                           43                             91
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 22(15Q26.3) MUTATED       34     39     13     14     15
  AMP PEAK 22(15Q26.3) WILD-TYPE    146    100     86     97    118
D22V11, multiclass
        clus
vv       AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  CLUS_1                           34                            146
  CLUS_2                           39                            100
  CLUS_3                           13                             86
  CLUS_4                           14                             97
  CLUS_5                           15                            118
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(15Q26.3) MUTATED       75     28     12
  AMP PEAK 22(15Q26.3) WILD-TYPE    230    219     98
D22V12, multiclass
        clus
vv       AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  CLUS_1                           75                            230
  CLUS_2                           28                            219
  CLUS_3                           12                             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = AMP PEAK 23(17P11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 23(17P11.2) MUTATED        0      5     23      9     11     13
  AMP PEAK 23(17P11.2) WILD-TYPE     21     31     96     87     98     59
                                vv
clus                             CLUS_7 CLUS_8
  AMP PEAK 23(17P11.2) MUTATED        2      1
  AMP PEAK 23(17P11.2) WILD-TYPE     18     39
D23V1, multiclass
        clus
vv       AMP PEAK 23(17P11.2) MUTATED AMP PEAK 23(17P11.2) WILD-TYPE
  CLUS_1                            0                             21
  CLUS_2                            5                             31
  CLUS_3                           23                             96
  CLUS_4                            9                             87
  CLUS_5                           11                             98
  CLUS_6                           13                             59
  CLUS_7                            2                             18
  CLUS_8                            1                             39
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 23(17P11.2) MUTATED       16     12     20      7      9
  AMP PEAK 23(17P11.2) WILD-TYPE     85    140     94     81     49
D23V2, multiclass
        clus
vv       AMP PEAK 23(17P11.2) MUTATED AMP PEAK 23(17P11.2) WILD-TYPE
  CLUS_1                           16                             85
  CLUS_2                           12                            140
  CLUS_3                           20                             94
  CLUS_4                            7                             81
  CLUS_5                            9                             49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 23(17P11.2) MUTATED       63     26     14     32     12
  AMP PEAK 23(17P11.2) WILD-TYPE    212    381     84    225     31
D23V3, multiclass
        clus
vv       AMP PEAK 23(17P11.2) MUTATED AMP PEAK 23(17P11.2) WILD-TYPE
  CLUS_1                           63                            212
  CLUS_2                           26                            381
  CLUS_3                           14                             84
  CLUS_4                           32                            225
  CLUS_5                           12                             31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 23(17P11.2) MUTATED       37     22     21      7     20      3
  AMP PEAK 23(17P11.2) WILD-TYPE    116     91    156    124    108     52
D23V4, multiclass
        clus
vv       AMP PEAK 23(17P11.2) MUTATED AMP PEAK 23(17P11.2) WILD-TYPE
  CLUS_1                           37                            116
  CLUS_2                           22                             91
  CLUS_3                           21                            156
  CLUS_4                            7                            124
  CLUS_5                           20                            108
  CLUS_6                            3                             52
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(17P11.2) MUTATED       21     20     13
  AMP PEAK 23(17P11.2) WILD-TYPE    127    114    104
D23V5, multiclass
        clus
vv       AMP PEAK 23(17P11.2) MUTATED AMP PEAK 23(17P11.2) WILD-TYPE
  CLUS_1                           21                            127
  CLUS_2                           20                            114
  CLUS_3                           13                            104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 23(17P11.2) MUTATED        7      7      7      5     18     10
  AMP PEAK 23(17P11.2) WILD-TYPE     57     39     83     47     98     21
D23V6, multiclass
        clus
vv       AMP PEAK 23(17P11.2) MUTATED AMP PEAK 23(17P11.2) WILD-TYPE
  CLUS_1                            7                             57
  CLUS_2                            7                             39
  CLUS_3                            7                             83
  CLUS_4                            5                             47
  CLUS_5                           18                             98
  CLUS_6                           10                             21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(17P11.2) MUTATED       94     39     12
  AMP PEAK 23(17P11.2) WILD-TYPE    465    265    200
D23V7, multiclass
        clus
vv       AMP PEAK 23(17P11.2) MUTATED AMP PEAK 23(17P11.2) WILD-TYPE
  CLUS_1                           94                            465
  CLUS_2                           39                            265
  CLUS_3                           12                            200
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 23(17P11.2) MUTATED       44     32      5     35     18     11
  AMP PEAK 23(17P11.2) WILD-TYPE    245    131     85    255    165     49
D23V8, multiclass
        clus
vv       AMP PEAK 23(17P11.2) MUTATED AMP PEAK 23(17P11.2) WILD-TYPE
  CLUS_1                           44                            245
  CLUS_2                           32                            131
  CLUS_3                            5                             85
  CLUS_4                           35                            255
  CLUS_5                           18                            165
  CLUS_6                           11                             49
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(17P11.2) MUTATED       49     18     43     36
  AMP PEAK 23(17P11.2) WILD-TYPE    256    194    226    239
D23V9, multiclass
        clus
vv       AMP PEAK 23(17P11.2) MUTATED AMP PEAK 23(17P11.2) WILD-TYPE
  CLUS_1                           49                            256
  CLUS_2                           18                            194
  CLUS_3                           43                            226
  CLUS_4                           36                            239
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 23(17P11.2) MUTATED       50     23     24     17     19     13
  AMP PEAK 23(17P11.2) WILD-TYPE    244    129    221    123     77    121
D23V10, multiclass
        clus
vv       AMP PEAK 23(17P11.2) MUTATED AMP PEAK 23(17P11.2) WILD-TYPE
  CLUS_1                           50                            244
  CLUS_2                           23                            129
  CLUS_3                           24                            221
  CLUS_4                           17                            123
  CLUS_5                           19                             77
  CLUS_6                           13                            121
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 23(17P11.2) MUTATED       27     19     11     10     19
  AMP PEAK 23(17P11.2) WILD-TYPE    153    120     88    101    114
D23V11, multiclass
        clus
vv       AMP PEAK 23(17P11.2) MUTATED AMP PEAK 23(17P11.2) WILD-TYPE
  CLUS_1                           27                            153
  CLUS_2                           19                            120
  CLUS_3                           11                             88
  CLUS_4                           10                            101
  CLUS_5                           19                            114
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(17P11.2) MUTATED       48     29      9
  AMP PEAK 23(17P11.2) WILD-TYPE    257    218    101
D23V12, multiclass
        clus
vv       AMP PEAK 23(17P11.2) MUTATED AMP PEAK 23(17P11.2) WILD-TYPE
  CLUS_1                           48                            257
  CLUS_2                           29                            218
  CLUS_3                            9                            101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = AMP PEAK 24(17Q12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 24(17Q12) MUTATED        9     11     53     19     14     49      7
  AMP PEAK 24(17Q12) WILD-TYPE     12     25     66     77     95     23     13
                              vv
clus                           CLUS_8
  AMP PEAK 24(17Q12) MUTATED        4
  AMP PEAK 24(17Q12) WILD-TYPE     36
D24V1, multiclass
        clus
vv       AMP PEAK 24(17Q12) MUTATED AMP PEAK 24(17Q12) WILD-TYPE
  CLUS_1                          9                           12
  CLUS_2                         11                           25
  CLUS_3                         53                           66
  CLUS_4                         19                           77
  CLUS_5                         14                           95
  CLUS_6                         49                           23
  CLUS_7                          7                           13
  CLUS_8                          4                           36
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 24(17Q12) MUTATED       40     28     71     16     11
  AMP PEAK 24(17Q12) WILD-TYPE     61    124     43     72     47
D24V2, multiclass
        clus
vv       AMP PEAK 24(17Q12) MUTATED AMP PEAK 24(17Q12) WILD-TYPE
  CLUS_1                         40                           61
  CLUS_2                         28                          124
  CLUS_3                         71                           43
  CLUS_4                         16                           72
  CLUS_5                         11                           47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 24(17Q12) MUTATED      172     62     23     63     13
  AMP PEAK 24(17Q12) WILD-TYPE    103    345     75    194     30
D24V3, multiclass
        clus
vv       AMP PEAK 24(17Q12) MUTATED AMP PEAK 24(17Q12) WILD-TYPE
  CLUS_1                        172                          103
  CLUS_2                         62                          345
  CLUS_3                         23                           75
  CLUS_4                         63                          194
  CLUS_5                         13                           30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 24(17Q12) MUTATED       75     44     33     30     32     14
  AMP PEAK 24(17Q12) WILD-TYPE     78     69    144    101     96     41
D24V4, multiclass
        clus
vv       AMP PEAK 24(17Q12) MUTATED AMP PEAK 24(17Q12) WILD-TYPE
  CLUS_1                         75                           78
  CLUS_2                         44                           69
  CLUS_3                         33                          144
  CLUS_4                         30                          101
  CLUS_5                         32                           96
  CLUS_6                         14                           41
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(17Q12) MUTATED       58     40     32
  AMP PEAK 24(17Q12) WILD-TYPE     90     94     85
D24V5, multiclass
        clus
vv       AMP PEAK 24(17Q12) MUTATED AMP PEAK 24(17Q12) WILD-TYPE
  CLUS_1                         58                           90
  CLUS_2                         40                           94
  CLUS_3                         32                           85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 24(17Q12) MUTATED        9     12     20     14     44     31
  AMP PEAK 24(17Q12) WILD-TYPE     55     34     70     38     72      0
D24V6, multiclass
        clus
vv       AMP PEAK 24(17Q12) MUTATED AMP PEAK 24(17Q12) WILD-TYPE
  CLUS_1                          9                           55
  CLUS_2                         12                           34
  CLUS_3                         20                           70
  CLUS_4                         14                           38
  CLUS_5                         44                           72
  CLUS_6                         31                            0
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(17Q12) MUTATED      188    112     31
  AMP PEAK 24(17Q12) WILD-TYPE    371    192    181
D24V7, multiclass
        clus
vv       AMP PEAK 24(17Q12) MUTATED AMP PEAK 24(17Q12) WILD-TYPE
  CLUS_1                        188                          371
  CLUS_2                        112                          192
  CLUS_3                         31                          181
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 24(17Q12) MUTATED       95     85     10     68     33     40
  AMP PEAK 24(17Q12) WILD-TYPE    194     78     80    222    150     20
D24V8, multiclass
        clus
vv       AMP PEAK 24(17Q12) MUTATED AMP PEAK 24(17Q12) WILD-TYPE
  CLUS_1                         95                          194
  CLUS_2                         85                           78
  CLUS_3                         10                           80
  CLUS_4                         68                          222
  CLUS_5                         33                          150
  CLUS_6                         40                           20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(17Q12) MUTATED      105     45     69    107
  AMP PEAK 24(17Q12) WILD-TYPE    200    167    200    168
D24V9, multiclass
        clus
vv       AMP PEAK 24(17Q12) MUTATED AMP PEAK 24(17Q12) WILD-TYPE
  CLUS_1                        105                          200
  CLUS_2                         45                          167
  CLUS_3                         69                          200
  CLUS_4                        107                          168
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 24(17Q12) MUTATED      119     66     49     40     30     22
  AMP PEAK 24(17Q12) WILD-TYPE    175     86    196    100     66    112
D24V10, multiclass
        clus
vv       AMP PEAK 24(17Q12) MUTATED AMP PEAK 24(17Q12) WILD-TYPE
  CLUS_1                        119                          175
  CLUS_2                         66                           86
  CLUS_3                         49                          196
  CLUS_4                         40                          100
  CLUS_5                         30                           66
  CLUS_6                         22                          112
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 24(17Q12) MUTATED       77     38     19     29     37
  AMP PEAK 24(17Q12) WILD-TYPE    103    101     80     82     96
D24V11, multiclass
        clus
vv       AMP PEAK 24(17Q12) MUTATED AMP PEAK 24(17Q12) WILD-TYPE
  CLUS_1                         77                          103
  CLUS_2                         38                          101
  CLUS_3                         19                           80
  CLUS_4                         29                           82
  CLUS_5                         37                           96
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(17Q12) MUTATED      117     58     25
  AMP PEAK 24(17Q12) WILD-TYPE    188    189     85
D24V12, multiclass
        clus
vv       AMP PEAK 24(17Q12) MUTATED AMP PEAK 24(17Q12) WILD-TYPE
  CLUS_1                        117                          188
  CLUS_2                         58                          189
  CLUS_3                         25                           85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = AMP PEAK 25(17Q23.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 25(17Q23.1) MUTATED        9     17     81     29     16     44
  AMP PEAK 25(17Q23.1) WILD-TYPE     12     19     38     67     93     28
                                vv
clus                             CLUS_7 CLUS_8
  AMP PEAK 25(17Q23.1) MUTATED       11      9
  AMP PEAK 25(17Q23.1) WILD-TYPE      9     31
D25V1, multiclass
        clus
vv       AMP PEAK 25(17Q23.1) MUTATED AMP PEAK 25(17Q23.1) WILD-TYPE
  CLUS_1                            9                             12
  CLUS_2                           17                             19
  CLUS_3                           81                             38
  CLUS_4                           29                             67
  CLUS_5                           16                             93
  CLUS_6                           44                             28
  CLUS_7                           11                              9
  CLUS_8                            9                             31
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 25(17Q23.1) MUTATED       62     45     71     25     13
  AMP PEAK 25(17Q23.1) WILD-TYPE     39    107     43     63     45
D25V2, multiclass
        clus
vv       AMP PEAK 25(17Q23.1) MUTATED AMP PEAK 25(17Q23.1) WILD-TYPE
  CLUS_1                           62                             39
  CLUS_2                           45                            107
  CLUS_3                           71                             43
  CLUS_4                           25                             63
  CLUS_5                           13                             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 25(17Q23.1) MUTATED      201     72     25    110     18
  AMP PEAK 25(17Q23.1) WILD-TYPE     74    335     73    147     25
D25V3, multiclass
        clus
vv       AMP PEAK 25(17Q23.1) MUTATED AMP PEAK 25(17Q23.1) WILD-TYPE
  CLUS_1                          201                             74
  CLUS_2                           72                            335
  CLUS_3                           25                             73
  CLUS_4                          110                            147
  CLUS_5                           18                             25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 25(17Q23.1) MUTATED       93     51     39     35     50     20
  AMP PEAK 25(17Q23.1) WILD-TYPE     60     62    138     96     78     35
D25V4, multiclass
        clus
vv       AMP PEAK 25(17Q23.1) MUTATED AMP PEAK 25(17Q23.1) WILD-TYPE
  CLUS_1                           93                             60
  CLUS_2                           51                             62
  CLUS_3                           39                            138
  CLUS_4                           35                             96
  CLUS_5                           50                             78
  CLUS_6                           20                             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(17Q23.1) MUTATED       68     54     45
  AMP PEAK 25(17Q23.1) WILD-TYPE     80     80     72
D25V5, multiclass
        clus
vv       AMP PEAK 25(17Q23.1) MUTATED AMP PEAK 25(17Q23.1) WILD-TYPE
  CLUS_1                           68                             80
  CLUS_2                           54                             80
  CLUS_3                           45                             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 25(17Q23.1) MUTATED       13     18     26     20     71     19
  AMP PEAK 25(17Q23.1) WILD-TYPE     51     28     64     32     45     12
D25V6, multiclass
        clus
vv       AMP PEAK 25(17Q23.1) MUTATED AMP PEAK 25(17Q23.1) WILD-TYPE
  CLUS_1                           13                             51
  CLUS_2                           18                             28
  CLUS_3                           26                             64
  CLUS_4                           20                             32
  CLUS_5                           71                             45
  CLUS_6                           19                             12
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(17Q23.1) MUTATED      247    128     49
  AMP PEAK 25(17Q23.1) WILD-TYPE    312    176    163
D25V7, multiclass
        clus
vv       AMP PEAK 25(17Q23.1) MUTATED AMP PEAK 25(17Q23.1) WILD-TYPE
  CLUS_1                          247                            312
  CLUS_2                          128                            176
  CLUS_3                           49                            163
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 25(17Q23.1) MUTATED      127     99     14     95     60     29
  AMP PEAK 25(17Q23.1) WILD-TYPE    162     64     76    195    123     31
D25V8, multiclass
        clus
vv       AMP PEAK 25(17Q23.1) MUTATED AMP PEAK 25(17Q23.1) WILD-TYPE
  CLUS_1                          127                            162
  CLUS_2                           99                             64
  CLUS_3                           14                             76
  CLUS_4                           95                            195
  CLUS_5                           60                            123
  CLUS_6                           29                             31
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(17Q23.1) MUTATED      150     47     92    129
  AMP PEAK 25(17Q23.1) WILD-TYPE    155    165    177    146
D25V9, multiclass
        clus
vv       AMP PEAK 25(17Q23.1) MUTATED AMP PEAK 25(17Q23.1) WILD-TYPE
  CLUS_1                          150                            155
  CLUS_2                           47                            165
  CLUS_3                           92                            177
  CLUS_4                          129                            146
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 25(17Q23.1) MUTATED      154     77     61     42     40     44
  AMP PEAK 25(17Q23.1) WILD-TYPE    140     75    184     98     56     90
D25V10, multiclass
        clus
vv       AMP PEAK 25(17Q23.1) MUTATED AMP PEAK 25(17Q23.1) WILD-TYPE
  CLUS_1                          154                            140
  CLUS_2                           77                             75
  CLUS_3                           61                            184
  CLUS_4                           42                             98
  CLUS_5                           40                             56
  CLUS_6                           44                             90
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 25(17Q23.1) MUTATED       88     58     26     27     47
  AMP PEAK 25(17Q23.1) WILD-TYPE     92     81     73     84     86
D25V11, multiclass
        clus
vv       AMP PEAK 25(17Q23.1) MUTATED AMP PEAK 25(17Q23.1) WILD-TYPE
  CLUS_1                           88                             92
  CLUS_2                           58                             81
  CLUS_3                           26                             73
  CLUS_4                           27                             84
  CLUS_5                           47                             86
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(17Q23.1) MUTATED      150     67     29
  AMP PEAK 25(17Q23.1) WILD-TYPE    155    180     81
D25V12, multiclass
        clus
vv       AMP PEAK 25(17Q23.1) MUTATED AMP PEAK 25(17Q23.1) WILD-TYPE
  CLUS_1                          150                            155
  CLUS_2                           67                            180
  CLUS_3                           29                             81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = AMP PEAK 26(19P13.12) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 26(19P13.12) MUTATED        5      6     22     40     16     11
  AMP PEAK 26(19P13.12) WILD-TYPE     16     30     97     56     93     61
                                 vv
clus                              CLUS_7 CLUS_8
  AMP PEAK 26(19P13.12) MUTATED        5      4
  AMP PEAK 26(19P13.12) WILD-TYPE     15     36
D26V1, multiclass
        clus
vv       AMP PEAK 26(19P13.12) MUTATED AMP PEAK 26(19P13.12) WILD-TYPE
  CLUS_1                             5                              16
  CLUS_2                             6                              30
  CLUS_3                            22                              97
  CLUS_4                            40                              56
  CLUS_5                            16                              93
  CLUS_6                            11                              61
  CLUS_7                             5                              15
  CLUS_8                             4                              36
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 26(19P13.12) MUTATED       19     21     23     35     11
  AMP PEAK 26(19P13.12) WILD-TYPE     82    131     91     53     47
D26V2, multiclass
        clus
vv       AMP PEAK 26(19P13.12) MUTATED AMP PEAK 26(19P13.12) WILD-TYPE
  CLUS_1                            19                              82
  CLUS_2                            21                             131
  CLUS_3                            23                              91
  CLUS_4                            35                              53
  CLUS_5                            11                              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 26(19P13.12) MUTATED       51     43     28     96     12
  AMP PEAK 26(19P13.12) WILD-TYPE    224    364     70    161     31
D26V3, multiclass
        clus
vv       AMP PEAK 26(19P13.12) MUTATED AMP PEAK 26(19P13.12) WILD-TYPE
  CLUS_1                            51                             224
  CLUS_2                            43                             364
  CLUS_3                            28                              70
  CLUS_4                            96                             161
  CLUS_5                            12                              31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 26(19P13.12) MUTATED       26     22     22     27     49      7
  AMP PEAK 26(19P13.12) WILD-TYPE    127     91    155    104     79     48
D26V4, multiclass
        clus
vv       AMP PEAK 26(19P13.12) MUTATED AMP PEAK 26(19P13.12) WILD-TYPE
  CLUS_1                            26                             127
  CLUS_2                            22                              91
  CLUS_3                            22                             155
  CLUS_4                            27                             104
  CLUS_5                            49                              79
  CLUS_6                             7                              48
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(19P13.12) MUTATED       49     26     17
  AMP PEAK 26(19P13.12) WILD-TYPE     99    108    100
D26V5, multiclass
        clus
vv       AMP PEAK 26(19P13.12) MUTATED AMP PEAK 26(19P13.12) WILD-TYPE
  CLUS_1                            49                              99
  CLUS_2                            26                             108
  CLUS_3                            17                             100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 26(19P13.12) MUTATED       12     10     35      6     22      7
  AMP PEAK 26(19P13.12) WILD-TYPE     52     36     55     46     94     24
D26V6, multiclass
        clus
vv       AMP PEAK 26(19P13.12) MUTATED AMP PEAK 26(19P13.12) WILD-TYPE
  CLUS_1                            12                              52
  CLUS_2                            10                              36
  CLUS_3                            35                              55
  CLUS_4                             6                              46
  CLUS_5                            22                              94
  CLUS_6                             7                              24
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(19P13.12) MUTATED       91    103     33
  AMP PEAK 26(19P13.12) WILD-TYPE    468    201    179
D26V7, multiclass
        clus
vv       AMP PEAK 26(19P13.12) MUTATED AMP PEAK 26(19P13.12) WILD-TYPE
  CLUS_1                            91                             468
  CLUS_2                           103                             201
  CLUS_3                            33                             179
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 26(19P13.12) MUTATED       47     30     14     47     74     15
  AMP PEAK 26(19P13.12) WILD-TYPE    242    133     76    243    109     45
D26V8, multiclass
        clus
vv       AMP PEAK 26(19P13.12) MUTATED AMP PEAK 26(19P13.12) WILD-TYPE
  CLUS_1                            47                             242
  CLUS_2                            30                             133
  CLUS_3                            14                              76
  CLUS_4                            47                             243
  CLUS_5                            74                             109
  CLUS_6                            15                              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 26(19P13.12) MUTATED       99     35     47     43
  AMP PEAK 26(19P13.12) WILD-TYPE    206    177    222    232
D26V9, multiclass
        clus
vv       AMP PEAK 26(19P13.12) MUTATED AMP PEAK 26(19P13.12) WILD-TYPE
  CLUS_1                            99                             206
  CLUS_2                            35                             177
  CLUS_3                            47                             222
  CLUS_4                            43                             232
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 26(19P13.12) MUTATED       52     42     38     23     13     56
  AMP PEAK 26(19P13.12) WILD-TYPE    242    110    207    117     83     78
D26V10, multiclass
        clus
vv       AMP PEAK 26(19P13.12) MUTATED AMP PEAK 26(19P13.12) WILD-TYPE
  CLUS_1                            52                             242
  CLUS_2                            42                             110
  CLUS_3                            38                             207
  CLUS_4                            23                             117
  CLUS_5                            13                              83
  CLUS_6                            56                              78
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 26(19P13.12) MUTATED       27     54     16     27     18
  AMP PEAK 26(19P13.12) WILD-TYPE    153     85     83     84    115
D26V11, multiclass
        clus
vv       AMP PEAK 26(19P13.12) MUTATED AMP PEAK 26(19P13.12) WILD-TYPE
  CLUS_1                            27                             153
  CLUS_2                            54                              85
  CLUS_3                            16                              83
  CLUS_4                            27                              84
  CLUS_5                            18                             115
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(19P13.12) MUTATED       77     44     21
  AMP PEAK 26(19P13.12) WILD-TYPE    228    203     89
D26V12, multiclass
        clus
vv       AMP PEAK 26(19P13.12) MUTATED AMP PEAK 26(19P13.12) WILD-TYPE
  CLUS_1                            77                             228
  CLUS_2                            44                             203
  CLUS_3                            21                              89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = AMP PEAK 27(19Q12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 27(19Q12) MUTATED        4      5     29     55     15     20      7
  AMP PEAK 27(19Q12) WILD-TYPE     17     31     90     41     94     52     13
                              vv
clus                           CLUS_8
  AMP PEAK 27(19Q12) MUTATED        5
  AMP PEAK 27(19Q12) WILD-TYPE     35
D27V1, multiclass
        clus
vv       AMP PEAK 27(19Q12) MUTATED AMP PEAK 27(19Q12) WILD-TYPE
  CLUS_1                          4                           17
  CLUS_2                          5                           31
  CLUS_3                         29                           90
  CLUS_4                         55                           41
  CLUS_5                         15                           94
  CLUS_6                         20                           52
  CLUS_7                          7                           13
  CLUS_8                          5                           35
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 27(19Q12) MUTATED       20     24     35     50     11
  AMP PEAK 27(19Q12) WILD-TYPE     81    128     79     38     47
D27V2, multiclass
        clus
vv       AMP PEAK 27(19Q12) MUTATED AMP PEAK 27(19Q12) WILD-TYPE
  CLUS_1                         20                           81
  CLUS_2                         24                          128
  CLUS_3                         35                           79
  CLUS_4                         50                           38
  CLUS_5                         11                           47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 27(19Q12) MUTATED       57     45     29    139     14
  AMP PEAK 27(19Q12) WILD-TYPE    218    362     69    118     29
D27V3, multiclass
        clus
vv       AMP PEAK 27(19Q12) MUTATED AMP PEAK 27(19Q12) WILD-TYPE
  CLUS_1                         57                          218
  CLUS_2                         45                          362
  CLUS_3                         29                           69
  CLUS_4                        139                          118
  CLUS_5                         14                           29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 27(19Q12) MUTATED       41     24     23     29     68      6
  AMP PEAK 27(19Q12) WILD-TYPE    112     89    154    102     60     49
D27V4, multiclass
        clus
vv       AMP PEAK 27(19Q12) MUTATED AMP PEAK 27(19Q12) WILD-TYPE
  CLUS_1                         41                          112
  CLUS_2                         24                           89
  CLUS_3                         23                          154
  CLUS_4                         29                          102
  CLUS_5                         68                           60
  CLUS_6                          6                           49
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(19Q12) MUTATED       63     24     24
  AMP PEAK 27(19Q12) WILD-TYPE     85    110     93
D27V5, multiclass
        clus
vv       AMP PEAK 27(19Q12) MUTATED AMP PEAK 27(19Q12) WILD-TYPE
  CLUS_1                         63                           85
  CLUS_2                         24                          110
  CLUS_3                         24                           93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 27(19Q12) MUTATED       15     11     46     10     19     10
  AMP PEAK 27(19Q12) WILD-TYPE     49     35     44     42     97     21
D27V6, multiclass
        clus
vv       AMP PEAK 27(19Q12) MUTATED AMP PEAK 27(19Q12) WILD-TYPE
  CLUS_1                         15                           49
  CLUS_2                         11                           35
  CLUS_3                         46                           44
  CLUS_4                         10                           42
  CLUS_5                         19                           97
  CLUS_6                         10                           21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(19Q12) MUTATED      108    143     31
  AMP PEAK 27(19Q12) WILD-TYPE    451    161    181
D27V7, multiclass
        clus
vv       AMP PEAK 27(19Q12) MUTATED AMP PEAK 27(19Q12) WILD-TYPE
  CLUS_1                        108                          451
  CLUS_2                        143                          161
  CLUS_3                         31                          181
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 27(19Q12) MUTATED       52     44     12     47    104     23
  AMP PEAK 27(19Q12) WILD-TYPE    237    119     78    243     79     37
D27V8, multiclass
        clus
vv       AMP PEAK 27(19Q12) MUTATED AMP PEAK 27(19Q12) WILD-TYPE
  CLUS_1                         52                          237
  CLUS_2                         44                          119
  CLUS_3                         12                           78
  CLUS_4                         47                          243
  CLUS_5                        104                           79
  CLUS_6                         23                           37
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 27(19Q12) MUTATED      139     32     50     59
  AMP PEAK 27(19Q12) WILD-TYPE    166    180    219    216
D27V9, multiclass
        clus
vv       AMP PEAK 27(19Q12) MUTATED AMP PEAK 27(19Q12) WILD-TYPE
  CLUS_1                        139                          166
  CLUS_2                         32                          180
  CLUS_3                         50                          219
  CLUS_4                         59                          216
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 27(19Q12) MUTATED       75     59     35     22     14     75
  AMP PEAK 27(19Q12) WILD-TYPE    219     93    210    118     82     59
D27V10, multiclass
        clus
vv       AMP PEAK 27(19Q12) MUTATED AMP PEAK 27(19Q12) WILD-TYPE
  CLUS_1                         75                          219
  CLUS_2                         59                           93
  CLUS_3                         35                          210
  CLUS_4                         22                          118
  CLUS_5                         14                           82
  CLUS_6                         75                           59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 27(19Q12) MUTATED       37     72     16     25     26
  AMP PEAK 27(19Q12) WILD-TYPE    143     67     83     86    107
D27V11, multiclass
        clus
vv       AMP PEAK 27(19Q12) MUTATED AMP PEAK 27(19Q12) WILD-TYPE
  CLUS_1                         37                          143
  CLUS_2                         72                           67
  CLUS_3                         16                           83
  CLUS_4                         25                           86
  CLUS_5                         26                          107
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(19Q12) MUTATED      102     52     22
  AMP PEAK 27(19Q12) WILD-TYPE    203    195     88
D27V12, multiclass
        clus
vv       AMP PEAK 27(19Q12) MUTATED AMP PEAK 27(19Q12) WILD-TYPE
  CLUS_1                        102                          203
  CLUS_2                         52                          195
  CLUS_3                         22                           88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(28) Variable = AMP PEAK 28(19Q13.42) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 28(19Q13.42) MUTATED        5      8     36     40     17     20
  AMP PEAK 28(19Q13.42) WILD-TYPE     16     28     83     56     92     52
                                 vv
clus                              CLUS_7 CLUS_8
  AMP PEAK 28(19Q13.42) MUTATED       10      6
  AMP PEAK 28(19Q13.42) WILD-TYPE     10     34
D28V1, multiclass
        clus
vv       AMP PEAK 28(19Q13.42) MUTATED AMP PEAK 28(19Q13.42) WILD-TYPE
  CLUS_1                             5                              16
  CLUS_2                             8                              28
  CLUS_3                            36                              83
  CLUS_4                            40                              56
  CLUS_5                            17                              92
  CLUS_6                            20                              52
  CLUS_7                            10                              10
  CLUS_8                             6                              34
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 28(19Q13.42) MUTATED       23     31     42     34     12
  AMP PEAK 28(19Q13.42) WILD-TYPE     78    121     72     54     46
D28V2, multiclass
        clus
vv       AMP PEAK 28(19Q13.42) MUTATED AMP PEAK 28(19Q13.42) WILD-TYPE
  CLUS_1                            23                              78
  CLUS_2                            31                             121
  CLUS_3                            42                              72
  CLUS_4                            34                              54
  CLUS_5                            12                              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 28(19Q13.42) MUTATED       79     45     29    105     18
  AMP PEAK 28(19Q13.42) WILD-TYPE    196    362     69    152     25
D28V3, multiclass
        clus
vv       AMP PEAK 28(19Q13.42) MUTATED AMP PEAK 28(19Q13.42) WILD-TYPE
  CLUS_1                            79                             196
  CLUS_2                            45                             362
  CLUS_3                            29                              69
  CLUS_4                           105                             152
  CLUS_5                            18                              25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 28(19Q13.42) MUTATED       55     27     25     23     42      8
  AMP PEAK 28(19Q13.42) WILD-TYPE     98     86    152    108     86     47
D28V4, multiclass
        clus
vv       AMP PEAK 28(19Q13.42) MUTATED AMP PEAK 28(19Q13.42) WILD-TYPE
  CLUS_1                            55                              98
  CLUS_2                            27                              86
  CLUS_3                            25                             152
  CLUS_4                            23                             108
  CLUS_5                            42                              86
  CLUS_6                             8                              47
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(19Q13.42) MUTATED       56     28     27
  AMP PEAK 28(19Q13.42) WILD-TYPE     92    106     90
D28V5, multiclass
        clus
vv       AMP PEAK 28(19Q13.42) MUTATED AMP PEAK 28(19Q13.42) WILD-TYPE
  CLUS_1                            56                              92
  CLUS_2                            28                             106
  CLUS_3                            27                              90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 28(19Q13.42) MUTATED       16     11     32     13     28     11
  AMP PEAK 28(19Q13.42) WILD-TYPE     48     35     58     39     88     20
D28V6, multiclass
        clus
vv       AMP PEAK 28(19Q13.42) MUTATED AMP PEAK 28(19Q13.42) WILD-TYPE
  CLUS_1                            16                              48
  CLUS_2                            11                              35
  CLUS_3                            32                              58
  CLUS_4                            13                              39
  CLUS_5                            28                              88
  CLUS_6                            11                              20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(19Q13.42) MUTATED      138    101     35
  AMP PEAK 28(19Q13.42) WILD-TYPE    421    203    177
D28V7, multiclass
        clus
vv       AMP PEAK 28(19Q13.42) MUTATED AMP PEAK 28(19Q13.42) WILD-TYPE
  CLUS_1                           138                             421
  CLUS_2                           101                             203
  CLUS_3                            35                             177
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 28(19Q13.42) MUTATED       67     51     13     61     63     19
  AMP PEAK 28(19Q13.42) WILD-TYPE    222    112     77    229    120     41
D28V8, multiclass
        clus
vv       AMP PEAK 28(19Q13.42) MUTATED AMP PEAK 28(19Q13.42) WILD-TYPE
  CLUS_1                            67                             222
  CLUS_2                            51                             112
  CLUS_3                            13                              77
  CLUS_4                            61                             229
  CLUS_5                            63                             120
  CLUS_6                            19                              41
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 28(19Q13.42) MUTATED      108     35     61     68
  AMP PEAK 28(19Q13.42) WILD-TYPE    197    177    208    207
D28V9, multiclass
        clus
vv       AMP PEAK 28(19Q13.42) MUTATED AMP PEAK 28(19Q13.42) WILD-TYPE
  CLUS_1                           108                             197
  CLUS_2                            35                             177
  CLUS_3                            61                             208
  CLUS_4                            68                             207
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 28(19Q13.42) MUTATED       87     55     45     23     18     44
  AMP PEAK 28(19Q13.42) WILD-TYPE    207     97    200    117     78     90
D28V10, multiclass
        clus
vv       AMP PEAK 28(19Q13.42) MUTATED AMP PEAK 28(19Q13.42) WILD-TYPE
  CLUS_1                            87                             207
  CLUS_2                            55                              97
  CLUS_3                            45                             200
  CLUS_4                            23                             117
  CLUS_5                            18                              78
  CLUS_6                            44                              90
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 28(19Q13.42) MUTATED       50     43     19     23     31
  AMP PEAK 28(19Q13.42) WILD-TYPE    130     96     80     88    102
D28V11, multiclass
        clus
vv       AMP PEAK 28(19Q13.42) MUTATED AMP PEAK 28(19Q13.42) WILD-TYPE
  CLUS_1                            50                             130
  CLUS_2                            43                              96
  CLUS_3                            19                              80
  CLUS_4                            23                              88
  CLUS_5                            31                             102
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(19Q13.42) MUTATED       89     52     25
  AMP PEAK 28(19Q13.42) WILD-TYPE    216    195     85
D28V12, multiclass
        clus
vv       AMP PEAK 28(19Q13.42) MUTATED AMP PEAK 28(19Q13.42) WILD-TYPE
  CLUS_1                            89                             216
  CLUS_2                            52                             195
  CLUS_3                            25                              85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(29) Variable = AMP PEAK 29(20Q13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 29(20Q13.2) MUTATED       12     18     85     52     35     49
  AMP PEAK 29(20Q13.2) WILD-TYPE      9     18     34     44     74     23
                                vv
clus                             CLUS_7 CLUS_8
  AMP PEAK 29(20Q13.2) MUTATED       15     10
  AMP PEAK 29(20Q13.2) WILD-TYPE      5     30
D29V1, multiclass
        clus
vv       AMP PEAK 29(20Q13.2) MUTATED AMP PEAK 29(20Q13.2) WILD-TYPE
  CLUS_1                           12                              9
  CLUS_2                           18                             18
  CLUS_3                           85                             34
  CLUS_4                           52                             44
  CLUS_5                           35                             74
  CLUS_6                           49                             23
  CLUS_7                           15                              5
  CLUS_8                           10                             30
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 29(20Q13.2) MUTATED       73     56     86     44     17
  AMP PEAK 29(20Q13.2) WILD-TYPE     28     96     28     44     41
D29V2, multiclass
        clus
vv       AMP PEAK 29(20Q13.2) MUTATED AMP PEAK 29(20Q13.2) WILD-TYPE
  CLUS_1                           73                             28
  CLUS_2                           56                             96
  CLUS_3                           86                             28
  CLUS_4                           44                             44
  CLUS_5                           17                             41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 29(20Q13.2) MUTATED      219     77     57    169     26
  AMP PEAK 29(20Q13.2) WILD-TYPE     56    330     41     88     17
D29V3, multiclass
        clus
vv       AMP PEAK 29(20Q13.2) MUTATED AMP PEAK 29(20Q13.2) WILD-TYPE
  CLUS_1                          219                             56
  CLUS_2                           77                            330
  CLUS_3                           57                             41
  CLUS_4                          169                             88
  CLUS_5                           26                             17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 29(20Q13.2) MUTATED      115     66     44     48     76     15
  AMP PEAK 29(20Q13.2) WILD-TYPE     38     47    133     83     52     40
D29V4, multiclass
        clus
vv       AMP PEAK 29(20Q13.2) MUTATED AMP PEAK 29(20Q13.2) WILD-TYPE
  CLUS_1                          115                             38
  CLUS_2                           66                             47
  CLUS_3                           44                            133
  CLUS_4                           48                             83
  CLUS_5                           76                             52
  CLUS_6                           15                             40
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(20Q13.2) MUTATED      100     68     54
  AMP PEAK 29(20Q13.2) WILD-TYPE     48     66     63
D29V5, multiclass
        clus
vv       AMP PEAK 29(20Q13.2) MUTATED AMP PEAK 29(20Q13.2) WILD-TYPE
  CLUS_1                          100                             48
  CLUS_2                           68                             66
  CLUS_3                           54                             63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 29(20Q13.2) MUTATED       29     21     53     19     78     22
  AMP PEAK 29(20Q13.2) WILD-TYPE     35     25     37     33     38      9
D29V6, multiclass
        clus
vv       AMP PEAK 29(20Q13.2) MUTATED AMP PEAK 29(20Q13.2) WILD-TYPE
  CLUS_1                           29                             35
  CLUS_2                           21                             25
  CLUS_3                           53                             37
  CLUS_4                           19                             33
  CLUS_5                           78                             38
  CLUS_6                           22                              9
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(20Q13.2) MUTATED      310    178     57
  AMP PEAK 29(20Q13.2) WILD-TYPE    249    126    155
D29V7, multiclass
        clus
vv       AMP PEAK 29(20Q13.2) MUTATED AMP PEAK 29(20Q13.2) WILD-TYPE
  CLUS_1                          310                            249
  CLUS_2                          178                            126
  CLUS_3                           57                            155
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 29(20Q13.2) MUTATED      160    119      9    125     98     34
  AMP PEAK 29(20Q13.2) WILD-TYPE    129     44     81    165     85     26
D29V8, multiclass
        clus
vv       AMP PEAK 29(20Q13.2) MUTATED AMP PEAK 29(20Q13.2) WILD-TYPE
  CLUS_1                          160                            129
  CLUS_2                          119                             44
  CLUS_3                            9                             81
  CLUS_4                          125                            165
  CLUS_5                           98                             85
  CLUS_6                           34                             26
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 29(20Q13.2) MUTATED      193     61    124    162
  AMP PEAK 29(20Q13.2) WILD-TYPE    112    151    145    113
D29V9, multiclass
        clus
vv       AMP PEAK 29(20Q13.2) MUTATED AMP PEAK 29(20Q13.2) WILD-TYPE
  CLUS_1                          193                            112
  CLUS_2                           61                            151
  CLUS_3                          124                            145
  CLUS_4                          162                            113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 29(20Q13.2) MUTATED      190     97     78     61     43     71
  AMP PEAK 29(20Q13.2) WILD-TYPE    104     55    167     79     53     63
D29V10, multiclass
        clus
vv       AMP PEAK 29(20Q13.2) MUTATED AMP PEAK 29(20Q13.2) WILD-TYPE
  CLUS_1                          190                            104
  CLUS_2                           97                             55
  CLUS_3                           78                            167
  CLUS_4                           61                             79
  CLUS_5                           43                             53
  CLUS_6                           71                             63
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 29(20Q13.2) MUTATED      117     87     42     45     51
  AMP PEAK 29(20Q13.2) WILD-TYPE     63     52     57     66     82
D29V11, multiclass
        clus
vv       AMP PEAK 29(20Q13.2) MUTATED AMP PEAK 29(20Q13.2) WILD-TYPE
  CLUS_1                          117                             63
  CLUS_2                           87                             52
  CLUS_3                           42                             57
  CLUS_4                           45                             66
  CLUS_5                           51                             82
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(20Q13.2) MUTATED      188    103     51
  AMP PEAK 29(20Q13.2) WILD-TYPE    117    144     59
D29V12, multiclass
        clus
vv       AMP PEAK 29(20Q13.2) MUTATED AMP PEAK 29(20Q13.2) WILD-TYPE
  CLUS_1                          188                            117
  CLUS_2                          103                            144
  CLUS_3                           51                             59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(30) Variable = DEL PEAK  1(1P36.13) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.13) MUTATED        9     11     61     42     31     46
  DEL PEAK  1(1P36.13) WILD-TYPE     12     25     58     54     78     26
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK  1(1P36.13) MUTATED        7     12
  DEL PEAK  1(1P36.13) WILD-TYPE     13     28
D30V1, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                            9                             12
  CLUS_2                           11                             25
  CLUS_3                           61                             58
  CLUS_4                           42                             54
  CLUS_5                           31                             78
  CLUS_6                           46                             26
  CLUS_7                            7                             13
  CLUS_8                           12                             28
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.13) MUTATED       57     39     67     39     17
  DEL PEAK  1(1P36.13) WILD-TYPE     44    113     47     49     41
D30V2, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                           57                             44
  CLUS_2                           39                            113
  CLUS_3                           67                             47
  CLUS_4                           39                             49
  CLUS_5                           17                             41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.13) MUTATED      172     65     63    134     18
  DEL PEAK  1(1P36.13) WILD-TYPE    103    342     35    123     25
D30V3, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                          172                            103
  CLUS_2                           65                            342
  CLUS_3                           63                             35
  CLUS_4                          134                            123
  CLUS_5                           18                             25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.13) MUTATED       86     67     40     36     57     20
  DEL PEAK  1(1P36.13) WILD-TYPE     67     46    137     95     71     35
D30V4, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                           86                             67
  CLUS_2                           67                             46
  CLUS_3                           40                            137
  CLUS_4                           36                             95
  CLUS_5                           57                             71
  CLUS_6                           20                             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.13) MUTATED       79     58     38
  DEL PEAK  1(1P36.13) WILD-TYPE     69     76     79
D30V5, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                           79                             69
  CLUS_2                           58                             76
  CLUS_3                           38                             79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.13) MUTATED       24     12     41     19     61     18
  DEL PEAK  1(1P36.13) WILD-TYPE     40     34     49     33     55     13
D30V6, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                           24                             40
  CLUS_2                           12                             34
  CLUS_3                           41                             49
  CLUS_4                           19                             33
  CLUS_5                           61                             55
  CLUS_6                           18                             13
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.13) MUTATED      261    134     54
  DEL PEAK  1(1P36.13) WILD-TYPE    298    170    158
D30V7, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                          261                            298
  CLUS_2                          134                            170
  CLUS_3                           54                            158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.13) MUTATED      130    105      9    107     80     18
  DEL PEAK  1(1P36.13) WILD-TYPE    159     58     81    183    103     42
D30V8, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                          130                            159
  CLUS_2                          105                             58
  CLUS_3                            9                             81
  CLUS_4                          107                            183
  CLUS_5                           80                            103
  CLUS_6                           18                             42
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.13) MUTATED      150     56    110    122
  DEL PEAK  1(1P36.13) WILD-TYPE    155    156    159    153
D30V9, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                          150                            155
  CLUS_2                           56                            156
  CLUS_3                          110                            159
  CLUS_4                          122                            153
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.13) MUTATED      154     66     66     56     36     60
  DEL PEAK  1(1P36.13) WILD-TYPE    140     86    179     84     60     74
D30V10, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                          154                            140
  CLUS_2                           66                             86
  CLUS_3                           66                            179
  CLUS_4                           56                             84
  CLUS_5                           36                             60
  CLUS_6                           60                             74
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.13) MUTATED       82     57     42     28     41
  DEL PEAK  1(1P36.13) WILD-TYPE     98     82     57     83     92
D30V11, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                           82                             98
  CLUS_2                           57                             82
  CLUS_3                           42                             57
  CLUS_4                           28                             83
  CLUS_5                           41                             92
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.13) MUTATED      127     86     37
  DEL PEAK  1(1P36.13) WILD-TYPE    178    161     73
D30V12, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                          127                            178
  CLUS_2                           86                            161
  CLUS_3                           37                             73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(31) Variable = DEL PEAK  2(1P22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1P22.1) MUTATED        8     12     49     23     35     38
  DEL PEAK  2(1P22.1) WILD-TYPE     13     24     70     73     74     34
                               vv
clus                            CLUS_7 CLUS_8
  DEL PEAK  2(1P22.1) MUTATED        7     11
  DEL PEAK  2(1P22.1) WILD-TYPE     13     29
D31V1, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                           8                            13
  CLUS_2                          12                            24
  CLUS_3                          49                            70
  CLUS_4                          23                            73
  CLUS_5                          35                            74
  CLUS_6                          38                            34
  CLUS_7                           7                            13
  CLUS_8                          11                            29
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P22.1) MUTATED       49     40     62     18     14
  DEL PEAK  2(1P22.1) WILD-TYPE     52    112     52     70     44
D31V2, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                          49                            52
  CLUS_2                          40                           112
  CLUS_3                          62                            52
  CLUS_4                          18                            70
  CLUS_5                          14                            44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P22.1) MUTATED      146     64     59     81     12
  DEL PEAK  2(1P22.1) WILD-TYPE    129    343     39    176     31
D31V3, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                         146                           129
  CLUS_2                          64                           343
  CLUS_3                          59                            39
  CLUS_4                          81                           176
  CLUS_5                          12                            31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1P22.1) MUTATED       68     55     40     27     31     17
  DEL PEAK  2(1P22.1) WILD-TYPE     85     58    137    104     97     38
D31V4, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                          68                            85
  CLUS_2                          55                            58
  CLUS_3                          40                           137
  CLUS_4                          27                           104
  CLUS_5                          31                            97
  CLUS_6                          17                            38
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P22.1) MUTATED       58     52     28
  DEL PEAK  2(1P22.1) WILD-TYPE     90     82     89
D31V5, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                          58                            90
  CLUS_2                          52                            82
  CLUS_3                          28                            89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1P22.1) MUTATED       21     13     23     13     51     17
  DEL PEAK  2(1P22.1) WILD-TYPE     43     33     67     39     65     14
D31V6, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                          21                            43
  CLUS_2                          13                            33
  CLUS_3                          23                            67
  CLUS_4                          13                            39
  CLUS_5                          51                            65
  CLUS_6                          17                            14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P22.1) MUTATED      221     87     51
  DEL PEAK  2(1P22.1) WILD-TYPE    338    217    161
D31V7, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                         221                           338
  CLUS_2                          87                           217
  CLUS_3                          51                           161
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1P22.1) MUTATED      104     96     15     90     38     16
  DEL PEAK  2(1P22.1) WILD-TYPE    185     67     75    200    145     44
D31V8, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                         104                           185
  CLUS_2                          96                            67
  CLUS_3                          15                            75
  CLUS_4                          90                           200
  CLUS_5                          38                           145
  CLUS_6                          16                            44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P22.1) MUTATED       98     50     96    109
  DEL PEAK  2(1P22.1) WILD-TYPE    207    162    173    166
D31V9, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                          98                           207
  CLUS_2                          50                           162
  CLUS_3                          96                           173
  CLUS_4                         109                           166
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1P22.1) MUTATED      135     50     63     51     28     26
  DEL PEAK  2(1P22.1) WILD-TYPE    159    102    182     89     68    108
D31V10, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                         135                           159
  CLUS_2                          50                           102
  CLUS_3                          63                           182
  CLUS_4                          51                            89
  CLUS_5                          28                            68
  CLUS_6                          26                           108
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P22.1) MUTATED       63     35     32     27     43
  DEL PEAK  2(1P22.1) WILD-TYPE    117    104     67     84     90
D31V11, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                          63                           117
  CLUS_2                          35                           104
  CLUS_3                          32                            67
  CLUS_4                          27                            84
  CLUS_5                          43                            90
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P22.1) MUTATED       93     75     32
  DEL PEAK  2(1P22.1) WILD-TYPE    212    172     78
D31V12, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                          93                           212
  CLUS_2                          75                           172
  CLUS_3                          32                            78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(32) Variable = DEL PEAK  3(2Q37.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(2Q37.3) MUTATED        5      9     42     49     24     28
  DEL PEAK  3(2Q37.3) WILD-TYPE     16     27     77     47     85     44
                               vv
clus                            CLUS_7 CLUS_8
  DEL PEAK  3(2Q37.3) MUTATED        6      0
  DEL PEAK  3(2Q37.3) WILD-TYPE     14     40
D32V1, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                           5                            16
  CLUS_2                           9                            27
  CLUS_3                          42                            77
  CLUS_4                          49                            47
  CLUS_5                          24                            85
  CLUS_6                          28                            44
  CLUS_7                           6                            14
  CLUS_8                           0                            40
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(2Q37.3) MUTATED       40     22     48     43     10
  DEL PEAK  3(2Q37.3) WILD-TYPE     61    130     66     45     48
D32V2, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                          40                            61
  CLUS_2                          22                           130
  CLUS_3                          48                            66
  CLUS_4                          43                            45
  CLUS_5                          10                            48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(2Q37.3) MUTATED      105     46     26    126     14
  DEL PEAK  3(2Q37.3) WILD-TYPE    170    361     72    131     29
D32V3, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                         105                           170
  CLUS_2                          46                           361
  CLUS_3                          26                            72
  CLUS_4                         126                           131
  CLUS_5                          14                            29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(2Q37.3) MUTATED       59     26     27     18     60      9
  DEL PEAK  3(2Q37.3) WILD-TYPE     94     87    150    113     68     46
D32V4, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                          59                            94
  CLUS_2                          26                            87
  CLUS_3                          27                           150
  CLUS_4                          18                           113
  CLUS_5                          60                            68
  CLUS_6                           9                            46
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q37.3) MUTATED       73     41     14
  DEL PEAK  3(2Q37.3) WILD-TYPE     75     93    103
D32V5, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                          73                            75
  CLUS_2                          41                            93
  CLUS_3                          14                           103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(2Q37.3) MUTATED       19      5     41      4     47     12
  DEL PEAK  3(2Q37.3) WILD-TYPE     45     41     49     48     69     19
D32V6, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                          19                            45
  CLUS_2                           5                            41
  CLUS_3                          41                            49
  CLUS_4                           4                            48
  CLUS_5                          47                            69
  CLUS_6                          12                            19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q37.3) MUTATED      156    136     22
  DEL PEAK  3(2Q37.3) WILD-TYPE    403    168    190
D32V7, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                         156                           403
  CLUS_2                         136                           168
  CLUS_3                          22                           190
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(2Q37.3) MUTATED       87     71     10     44     88     14
  DEL PEAK  3(2Q37.3) WILD-TYPE    202     92     80    246     95     46
D32V8, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                          87                           202
  CLUS_2                          71                            92
  CLUS_3                          10                            80
  CLUS_4                          44                           246
  CLUS_5                          88                            95
  CLUS_6                          14                            46
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2Q37.3) MUTATED      136     31     57     85
  DEL PEAK  3(2Q37.3) WILD-TYPE    169    181    212    190
D32V9, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                         136                           169
  CLUS_2                          31                           181
  CLUS_3                          57                           212
  CLUS_4                          85                           190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(2Q37.3) MUTATED       94     52     34     34     27     68
  DEL PEAK  3(2Q37.3) WILD-TYPE    200    100    211    106     69     66
D32V10, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                          94                           200
  CLUS_2                          52                           100
  CLUS_3                          34                           211
  CLUS_4                          34                           106
  CLUS_5                          27                            69
  CLUS_6                          68                            66
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(2Q37.3) MUTATED       59     61     14     20     27
  DEL PEAK  3(2Q37.3) WILD-TYPE    121     78     85     91    106
D32V11, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                          59                           121
  CLUS_2                          61                            78
  CLUS_3                          14                            85
  CLUS_4                          20                            91
  CLUS_5                          27                           106
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q37.3) MUTATED      108     48     25
  DEL PEAK  3(2Q37.3) WILD-TYPE    197    199     85
D32V12, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                         108                           197
  CLUS_2                          48                           199
  CLUS_3                          25                            85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(33) Variable = DEL PEAK  4(3P21.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(3P21.31) MUTATED        5     15     38     52      8     35
  DEL PEAK  4(3P21.31) WILD-TYPE     16     21     81     44    101     37
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK  4(3P21.31) MUTATED        9      7
  DEL PEAK  4(3P21.31) WILD-TYPE     11     33
D33V1, multiclass
        clus
vv       DEL PEAK  4(3P21.31) MUTATED DEL PEAK  4(3P21.31) WILD-TYPE
  CLUS_1                            5                             16
  CLUS_2                           15                             21
  CLUS_3                           38                             81
  CLUS_4                           52                             44
  CLUS_5                            8                            101
  CLUS_6                           35                             37
  CLUS_7                            9                             11
  CLUS_8                            7                             33
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(3P21.31) MUTATED       29     36     55     48      1
  DEL PEAK  4(3P21.31) WILD-TYPE     72    116     59     40     57
D33V2, multiclass
        clus
vv       DEL PEAK  4(3P21.31) MUTATED DEL PEAK  4(3P21.31) WILD-TYPE
  CLUS_1                           29                             72
  CLUS_2                           36                            116
  CLUS_3                           55                             59
  CLUS_4                           48                             40
  CLUS_5                            1                             57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(3P21.31) MUTATED      102     58     21    161      5
  DEL PEAK  4(3P21.31) WILD-TYPE    173    349     77     96     38
D33V3, multiclass
        clus
vv       DEL PEAK  4(3P21.31) MUTATED DEL PEAK  4(3P21.31) WILD-TYPE
  CLUS_1                          102                            173
  CLUS_2                           58                            349
  CLUS_3                           21                             77
  CLUS_4                          161                             96
  CLUS_5                            5                             38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(3P21.31) MUTATED       57     48     15     27     70     18
  DEL PEAK  4(3P21.31) WILD-TYPE     96     65    162    104     58     37
D33V4, multiclass
        clus
vv       DEL PEAK  4(3P21.31) MUTATED DEL PEAK  4(3P21.31) WILD-TYPE
  CLUS_1                           57                             96
  CLUS_2                           48                             65
  CLUS_3                           15                            162
  CLUS_4                           27                            104
  CLUS_5                           70                             58
  CLUS_6                           18                             37
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(3P21.31) MUTATED       81     27     36
  DEL PEAK  4(3P21.31) WILD-TYPE     67    107     81
D33V5, multiclass
        clus
vv       DEL PEAK  4(3P21.31) MUTATED DEL PEAK  4(3P21.31) WILD-TYPE
  CLUS_1                           81                             67
  CLUS_2                           27                            107
  CLUS_3                           36                             81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(3P21.31) MUTATED        5     12     55     19     42     11
  DEL PEAK  4(3P21.31) WILD-TYPE     59     34     35     33     74     20
D33V6, multiclass
        clus
vv       DEL PEAK  4(3P21.31) MUTATED DEL PEAK  4(3P21.31) WILD-TYPE
  CLUS_1                            5                             59
  CLUS_2                           12                             34
  CLUS_3                           55                             35
  CLUS_4                           19                             33
  CLUS_5                           42                             74
  CLUS_6                           11                             20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(3P21.31) MUTATED      142    163     41
  DEL PEAK  4(3P21.31) WILD-TYPE    417    141    171
D33V7, multiclass
        clus
vv       DEL PEAK  4(3P21.31) MUTATED DEL PEAK  4(3P21.31) WILD-TYPE
  CLUS_1                          142                            417
  CLUS_2                          163                            141
  CLUS_3                           41                            171
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(3P21.31) MUTATED       53     84     12     74    100     23
  DEL PEAK  4(3P21.31) WILD-TYPE    236     79     78    216     83     37
D33V8, multiclass
        clus
vv       DEL PEAK  4(3P21.31) MUTATED DEL PEAK  4(3P21.31) WILD-TYPE
  CLUS_1                           53                            236
  CLUS_2                           84                             79
  CLUS_3                           12                             78
  CLUS_4                           74                            216
  CLUS_5                          100                             83
  CLUS_6                           23                             37
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(3P21.31) MUTATED      154     34     66     86
  DEL PEAK  4(3P21.31) WILD-TYPE    151    178    203    189
D33V9, multiclass
        clus
vv       DEL PEAK  4(3P21.31) MUTATED DEL PEAK  4(3P21.31) WILD-TYPE
  CLUS_1                          154                            151
  CLUS_2                           34                            178
  CLUS_3                           66                            203
  CLUS_4                           86                            189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(3P21.31) MUTATED      119     68     45     24     11     73
  DEL PEAK  4(3P21.31) WILD-TYPE    175     84    200    116     85     61
D33V10, multiclass
        clus
vv       DEL PEAK  4(3P21.31) MUTATED DEL PEAK  4(3P21.31) WILD-TYPE
  CLUS_1                          119                            175
  CLUS_2                           68                             84
  CLUS_3                           45                            200
  CLUS_4                           24                            116
  CLUS_5                           11                             85
  CLUS_6                           73                             61
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(3P21.31) MUTATED       54     80     22     21     36
  DEL PEAK  4(3P21.31) WILD-TYPE    126     59     77     90     97
D33V11, multiclass
        clus
vv       DEL PEAK  4(3P21.31) MUTATED DEL PEAK  4(3P21.31) WILD-TYPE
  CLUS_1                           54                            126
  CLUS_2                           80                             59
  CLUS_3                           22                             77
  CLUS_4                           21                             90
  CLUS_5                           36                             97
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(3P21.31) MUTATED      123     67     23
  DEL PEAK  4(3P21.31) WILD-TYPE    182    180     87
D33V12, multiclass
        clus
vv       DEL PEAK  4(3P21.31) MUTATED DEL PEAK  4(3P21.31) WILD-TYPE
  CLUS_1                          123                            182
  CLUS_2                           67                            180
  CLUS_3                           23                             87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(34) Variable = DEL PEAK  5(4P16.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(4P16.3) MUTATED        3     10     25     58     22     38
  DEL PEAK  5(4P16.3) WILD-TYPE     18     26     94     38     87     34
                               vv
clus                            CLUS_7 CLUS_8
  DEL PEAK  5(4P16.3) MUTATED        7      6
  DEL PEAK  5(4P16.3) WILD-TYPE     13     34
D34V1, multiclass
        clus
vv       DEL PEAK  5(4P16.3) MUTATED DEL PEAK  5(4P16.3) WILD-TYPE
  CLUS_1                           3                            18
  CLUS_2                          10                            26
  CLUS_3                          25                            94
  CLUS_4                          58                            38
  CLUS_5                          22                            87
  CLUS_6                          38                            34
  CLUS_7                           7                            13
  CLUS_8                           6                            34
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(4P16.3) MUTATED       27     28     51     52     11
  DEL PEAK  5(4P16.3) WILD-TYPE     74    124     63     36     47
D34V2, multiclass
        clus
vv       DEL PEAK  5(4P16.3) MUTATED DEL PEAK  5(4P16.3) WILD-TYPE
  CLUS_1                          27                            74
  CLUS_2                          28                           124
  CLUS_3                          51                            63
  CLUS_4                          52                            36
  CLUS_5                          11                            47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(4P16.3) MUTATED       74     52     44    158     11
  DEL PEAK  5(4P16.3) WILD-TYPE    201    355     54     99     32
D34V3, multiclass
        clus
vv       DEL PEAK  5(4P16.3) MUTATED DEL PEAK  5(4P16.3) WILD-TYPE
  CLUS_1                          74                           201
  CLUS_2                          52                           355
  CLUS_3                          44                            54
  CLUS_4                         158                            99
  CLUS_5                          11                            32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(4P16.3) MUTATED       37     33     35     33     82      7
  DEL PEAK  5(4P16.3) WILD-TYPE    116     80    142     98     46     48
D34V4, multiclass
        clus
vv       DEL PEAK  5(4P16.3) MUTATED DEL PEAK  5(4P16.3) WILD-TYPE
  CLUS_1                          37                           116
  CLUS_2                          33                            80
  CLUS_3                          35                           142
  CLUS_4                          33                            98
  CLUS_5                          82                            46
  CLUS_6                           7                            48
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(4P16.3) MUTATED       77     38     25
  DEL PEAK  5(4P16.3) WILD-TYPE     71     96     92
D34V5, multiclass
        clus
vv       DEL PEAK  5(4P16.3) MUTATED DEL PEAK  5(4P16.3) WILD-TYPE
  CLUS_1                          77                            71
  CLUS_2                          38                            96
  CLUS_3                          25                            92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(4P16.3) MUTATED       18      8     54     17     32     11
  DEL PEAK  5(4P16.3) WILD-TYPE     46     38     36     35     84     20
D34V6, multiclass
        clus
vv       DEL PEAK  5(4P16.3) MUTATED DEL PEAK  5(4P16.3) WILD-TYPE
  CLUS_1                          18                            46
  CLUS_2                           8                            38
  CLUS_3                          54                            36
  CLUS_4                          17                            35
  CLUS_5                          32                            84
  CLUS_6                          11                            20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(4P16.3) MUTATED      137    171     30
  DEL PEAK  5(4P16.3) WILD-TYPE    422    133    182
D34V7, multiclass
        clus
vv       DEL PEAK  5(4P16.3) MUTATED DEL PEAK  5(4P16.3) WILD-TYPE
  CLUS_1                         137                           422
  CLUS_2                         171                           133
  CLUS_3                          30                           182
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(4P16.3) MUTATED       66     66     10     55    112     29
  DEL PEAK  5(4P16.3) WILD-TYPE    223     97     80    235     71     31
D34V8, multiclass
        clus
vv       DEL PEAK  5(4P16.3) MUTATED DEL PEAK  5(4P16.3) WILD-TYPE
  CLUS_1                          66                           223
  CLUS_2                          66                            97
  CLUS_3                          10                            80
  CLUS_4                          55                           235
  CLUS_5                         112                            71
  CLUS_6                          29                            31
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(4P16.3) MUTATED      157     38     49     84
  DEL PEAK  5(4P16.3) WILD-TYPE    148    174    220    191
D34V9, multiclass
        clus
vv       DEL PEAK  5(4P16.3) MUTATED DEL PEAK  5(4P16.3) WILD-TYPE
  CLUS_1                         157                           148
  CLUS_2                          38                           174
  CLUS_3                          49                           220
  CLUS_4                          84                           191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(4P16.3) MUTATED       89     64     34     42     15     84
  DEL PEAK  5(4P16.3) WILD-TYPE    205     88    211     98     81     50
D34V10, multiclass
        clus
vv       DEL PEAK  5(4P16.3) MUTATED DEL PEAK  5(4P16.3) WILD-TYPE
  CLUS_1                          89                           205
  CLUS_2                          64                            88
  CLUS_3                          34                           211
  CLUS_4                          42                            98
  CLUS_5                          15                            81
  CLUS_6                          84                            50
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(4P16.3) MUTATED       48     83     21     27     23
  DEL PEAK  5(4P16.3) WILD-TYPE    132     56     78     84    110
D34V11, multiclass
        clus
vv       DEL PEAK  5(4P16.3) MUTATED DEL PEAK  5(4P16.3) WILD-TYPE
  CLUS_1                          48                           132
  CLUS_2                          83                            56
  CLUS_3                          21                            78
  CLUS_4                          27                            84
  CLUS_5                          23                           110
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(4P16.3) MUTATED      115     54     33
  DEL PEAK  5(4P16.3) WILD-TYPE    190    193     77
D34V12, multiclass
        clus
vv       DEL PEAK  5(4P16.3) MUTATED DEL PEAK  5(4P16.3) WILD-TYPE
  CLUS_1                         115                           190
  CLUS_2                          54                           193
  CLUS_3                          33                            77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(35) Variable = DEL PEAK  6(4Q35.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(4Q35.1) MUTATED        6      9     25     54     24     34
  DEL PEAK  6(4Q35.1) WILD-TYPE     15     27     94     42     85     38
                               vv
clus                            CLUS_7 CLUS_8
  DEL PEAK  6(4Q35.1) MUTATED        9      9
  DEL PEAK  6(4Q35.1) WILD-TYPE     11     31
D35V1, multiclass
        clus
vv       DEL PEAK  6(4Q35.1) MUTATED DEL PEAK  6(4Q35.1) WILD-TYPE
  CLUS_1                           6                            15
  CLUS_2                           9                            27
  CLUS_3                          25                            94
  CLUS_4                          54                            42
  CLUS_5                          24                            85
  CLUS_6                          34                            38
  CLUS_7                           9                            11
  CLUS_8                           9                            31
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(4Q35.1) MUTATED       25     31     52     49     13
  DEL PEAK  6(4Q35.1) WILD-TYPE     76    121     62     39     45
D35V2, multiclass
        clus
vv       DEL PEAK  6(4Q35.1) MUTATED DEL PEAK  6(4Q35.1) WILD-TYPE
  CLUS_1                          25                            76
  CLUS_2                          31                           121
  CLUS_3                          52                            62
  CLUS_4                          49                            39
  CLUS_5                          13                            45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(4Q35.1) MUTATED       66     53     48    165     13
  DEL PEAK  6(4Q35.1) WILD-TYPE    209    354     50     92     30
D35V3, multiclass
        clus
vv       DEL PEAK  6(4Q35.1) MUTATED DEL PEAK  6(4Q35.1) WILD-TYPE
  CLUS_1                          66                           209
  CLUS_2                          53                           354
  CLUS_3                          48                            50
  CLUS_4                         165                            92
  CLUS_5                          13                            30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(4Q35.1) MUTATED       32     29     36     41     80     10
  DEL PEAK  6(4Q35.1) WILD-TYPE    121     84    141     90     48     45
D35V4, multiclass
        clus
vv       DEL PEAK  6(4Q35.1) MUTATED DEL PEAK  6(4Q35.1) WILD-TYPE
  CLUS_1                          32                           121
  CLUS_2                          29                            84
  CLUS_3                          36                           141
  CLUS_4                          41                            90
  CLUS_5                          80                            48
  CLUS_6                          10                            45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(4Q35.1) MUTATED       79     34     27
  DEL PEAK  6(4Q35.1) WILD-TYPE     69    100     90
D35V5, multiclass
        clus
vv       DEL PEAK  6(4Q35.1) MUTATED DEL PEAK  6(4Q35.1) WILD-TYPE
  CLUS_1                          79                            69
  CLUS_2                          34                           100
  CLUS_3                          27                            90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(4Q35.1) MUTATED       15     11     54     15     34     11
  DEL PEAK  6(4Q35.1) WILD-TYPE     49     35     36     37     82     20
D35V6, multiclass
        clus
vv       DEL PEAK  6(4Q35.1) MUTATED DEL PEAK  6(4Q35.1) WILD-TYPE
  CLUS_1                          15                            49
  CLUS_2                          11                            35
  CLUS_3                          54                            36
  CLUS_4                          15                            37
  CLUS_5                          34                            82
  CLUS_6                          11                            20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(4Q35.1) MUTATED      143    171     30
  DEL PEAK  6(4Q35.1) WILD-TYPE    416    133    182
D35V7, multiclass
        clus
vv       DEL PEAK  6(4Q35.1) MUTATED DEL PEAK  6(4Q35.1) WILD-TYPE
  CLUS_1                         143                           416
  CLUS_2                         171                           133
  CLUS_3                          30                           182
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(4Q35.1) MUTATED       61     67      9     67    116     24
  DEL PEAK  6(4Q35.1) WILD-TYPE    228     96     81    223     67     36
D35V8, multiclass
        clus
vv       DEL PEAK  6(4Q35.1) MUTATED DEL PEAK  6(4Q35.1) WILD-TYPE
  CLUS_1                          61                           228
  CLUS_2                          67                            96
  CLUS_3                           9                            81
  CLUS_4                          67                           223
  CLUS_5                         116                            67
  CLUS_6                          24                            36
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(4Q35.1) MUTATED      159     38     51     85
  DEL PEAK  6(4Q35.1) WILD-TYPE    146    174    218    190
D35V9, multiclass
        clus
vv       DEL PEAK  6(4Q35.1) MUTATED DEL PEAK  6(4Q35.1) WILD-TYPE
  CLUS_1                         159                           146
  CLUS_2                          38                           174
  CLUS_3                          51                           218
  CLUS_4                          85                           190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(4Q35.1) MUTATED       82     69     36     45     14     87
  DEL PEAK  6(4Q35.1) WILD-TYPE    212     83    209     95     82     47
D35V10, multiclass
        clus
vv       DEL PEAK  6(4Q35.1) MUTATED DEL PEAK  6(4Q35.1) WILD-TYPE
  CLUS_1                          82                           212
  CLUS_2                          69                            83
  CLUS_3                          36                           209
  CLUS_4                          45                            95
  CLUS_5                          14                            82
  CLUS_6                          87                            47
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(4Q35.1) MUTATED       50     86     23     26     22
  DEL PEAK  6(4Q35.1) WILD-TYPE    130     53     76     85    111
D35V11, multiclass
        clus
vv       DEL PEAK  6(4Q35.1) MUTATED DEL PEAK  6(4Q35.1) WILD-TYPE
  CLUS_1                          50                           130
  CLUS_2                          86                            53
  CLUS_3                          23                            76
  CLUS_4                          26                            85
  CLUS_5                          22                           111
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(4Q35.1) MUTATED      116     57     34
  DEL PEAK  6(4Q35.1) WILD-TYPE    189    190     76
D35V12, multiclass
        clus
vv       DEL PEAK  6(4Q35.1) MUTATED DEL PEAK  6(4Q35.1) WILD-TYPE
  CLUS_1                         116                           189
  CLUS_2                          57                           190
  CLUS_3                          34                            76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(36) Variable = DEL PEAK  7(5Q11.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(5Q11.2) MUTATED        3      5     19     69      7     26
  DEL PEAK  7(5Q11.2) WILD-TYPE     18     31    100     27    102     46
                               vv
clus                            CLUS_7 CLUS_8
  DEL PEAK  7(5Q11.2) MUTATED        3      4
  DEL PEAK  7(5Q11.2) WILD-TYPE     17     36
D36V1, multiclass
        clus
vv       DEL PEAK  7(5Q11.2) MUTATED DEL PEAK  7(5Q11.2) WILD-TYPE
  CLUS_1                           3                            18
  CLUS_2                           5                            31
  CLUS_3                          19                           100
  CLUS_4                          69                            27
  CLUS_5                           7                           102
  CLUS_6                          26                            46
  CLUS_7                           3                            17
  CLUS_8                           4                            36
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(5Q11.2) MUTATED       18     15     38     63      2
  DEL PEAK  7(5Q11.2) WILD-TYPE     83    137     76     25     56
D36V2, multiclass
        clus
vv       DEL PEAK  7(5Q11.2) MUTATED DEL PEAK  7(5Q11.2) WILD-TYPE
  CLUS_1                          18                            83
  CLUS_2                          15                           137
  CLUS_3                          38                            76
  CLUS_4                          63                            25
  CLUS_5                           2                            56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(5Q11.2) MUTATED       43     35      8    185      9
  DEL PEAK  7(5Q11.2) WILD-TYPE    232    372     90     72     34
D36V3, multiclass
        clus
vv       DEL PEAK  7(5Q11.2) MUTATED DEL PEAK  7(5Q11.2) WILD-TYPE
  CLUS_1                          43                           232
  CLUS_2                          35                           372
  CLUS_3                           8                            90
  CLUS_4                         185                            72
  CLUS_5                           9                            34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(5Q11.2) MUTATED       33     13      6     34     99      9
  DEL PEAK  7(5Q11.2) WILD-TYPE    120    100    171     97     29     46
D36V4, multiclass
        clus
vv       DEL PEAK  7(5Q11.2) MUTATED DEL PEAK  7(5Q11.2) WILD-TYPE
  CLUS_1                          33                           120
  CLUS_2                          13                           100
  CLUS_3                           6                           171
  CLUS_4                          34                            97
  CLUS_5                          99                            29
  CLUS_6                           9                            46
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(5Q11.2) MUTATED       79     13     23
  DEL PEAK  7(5Q11.2) WILD-TYPE     69    121     94
D36V5, multiclass
        clus
vv       DEL PEAK  7(5Q11.2) MUTATED DEL PEAK  7(5Q11.2) WILD-TYPE
  CLUS_1                          79                            69
  CLUS_2                          13                           121
  CLUS_3                          23                            94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(5Q11.2) MUTATED        4      3     64     10     24     10
  DEL PEAK  7(5Q11.2) WILD-TYPE     60     43     26     42     92     21
D36V6, multiclass
        clus
vv       DEL PEAK  7(5Q11.2) MUTATED DEL PEAK  7(5Q11.2) WILD-TYPE
  CLUS_1                           4                            60
  CLUS_2                           3                            43
  CLUS_3                          64                            26
  CLUS_4                          10                            42
  CLUS_5                          24                            92
  CLUS_6                          10                            21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(5Q11.2) MUTATED       80    182     16
  DEL PEAK  7(5Q11.2) WILD-TYPE    479    122    196
D36V7, multiclass
        clus
vv       DEL PEAK  7(5Q11.2) MUTATED DEL PEAK  7(5Q11.2) WILD-TYPE
  CLUS_1                          80                           479
  CLUS_2                         182                           122
  CLUS_3                          16                           196
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(5Q11.2) MUTATED       36     44      2     33    137     26
  DEL PEAK  7(5Q11.2) WILD-TYPE    253    119     88    257     46     34
D36V8, multiclass
        clus
vv       DEL PEAK  7(5Q11.2) MUTATED DEL PEAK  7(5Q11.2) WILD-TYPE
  CLUS_1                          36                           253
  CLUS_2                          44                           119
  CLUS_3                           2                            88
  CLUS_4                          33                           257
  CLUS_5                         137                            46
  CLUS_6                          26                            34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(5Q11.2) MUTATED      166     24     24     54
  DEL PEAK  7(5Q11.2) WILD-TYPE    139    188    245    221
D36V9, multiclass
        clus
vv       DEL PEAK  7(5Q11.2) MUTATED DEL PEAK  7(5Q11.2) WILD-TYPE
  CLUS_1                         166                           139
  CLUS_2                          24                           188
  CLUS_3                          24                           245
  CLUS_4                          54                           221
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(5Q11.2) MUTATED       64     65     20      7      6    106
  DEL PEAK  7(5Q11.2) WILD-TYPE    230     87    225    133     90     28
D36V10, multiclass
        clus
vv       DEL PEAK  7(5Q11.2) MUTATED DEL PEAK  7(5Q11.2) WILD-TYPE
  CLUS_1                          64                           230
  CLUS_2                          65                            87
  CLUS_3                          20                           225
  CLUS_4                           7                           133
  CLUS_5                           6                            90
  CLUS_6                         106                            28
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(5Q11.2) MUTATED       26     98     12     15     20
  DEL PEAK  7(5Q11.2) WILD-TYPE    154     41     87     96    113
D36V11, multiclass
        clus
vv       DEL PEAK  7(5Q11.2) MUTATED DEL PEAK  7(5Q11.2) WILD-TYPE
  CLUS_1                          26                           154
  CLUS_2                          98                            41
  CLUS_3                          12                            87
  CLUS_4                          15                            96
  CLUS_5                          20                           113
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(5Q11.2) MUTATED      125     31     15
  DEL PEAK  7(5Q11.2) WILD-TYPE    180    216     95
D36V12, multiclass
        clus
vv       DEL PEAK  7(5Q11.2) MUTATED DEL PEAK  7(5Q11.2) WILD-TYPE
  CLUS_1                         125                           180
  CLUS_2                          31                           216
  CLUS_3                          15                            95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(37) Variable = DEL PEAK  8(5Q21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(5Q21.3) MUTATED        2      5     19     71      7     24
  DEL PEAK  8(5Q21.3) WILD-TYPE     19     31    100     25    102     48
                               vv
clus                            CLUS_7 CLUS_8
  DEL PEAK  8(5Q21.3) MUTATED        5      2
  DEL PEAK  8(5Q21.3) WILD-TYPE     15     38
D37V1, multiclass
        clus
vv       DEL PEAK  8(5Q21.3) MUTATED DEL PEAK  8(5Q21.3) WILD-TYPE
  CLUS_1                           2                            19
  CLUS_2                           5                            31
  CLUS_3                          19                           100
  CLUS_4                          71                            25
  CLUS_5                           7                           102
  CLUS_6                          24                            48
  CLUS_7                           5                            15
  CLUS_8                           2                            38
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(5Q21.3) MUTATED       18     13     36     66      2
  DEL PEAK  8(5Q21.3) WILD-TYPE     83    139     78     22     56
D37V2, multiclass
        clus
vv       DEL PEAK  8(5Q21.3) MUTATED DEL PEAK  8(5Q21.3) WILD-TYPE
  CLUS_1                          18                            83
  CLUS_2                          13                           139
  CLUS_3                          36                            78
  CLUS_4                          66                            22
  CLUS_5                           2                            56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(5Q21.3) MUTATED       38     26      8    192      8
  DEL PEAK  8(5Q21.3) WILD-TYPE    237    381     90     65     35
D37V3, multiclass
        clus
vv       DEL PEAK  8(5Q21.3) MUTATED DEL PEAK  8(5Q21.3) WILD-TYPE
  CLUS_1                          38                           237
  CLUS_2                          26                           381
  CLUS_3                           8                            90
  CLUS_4                         192                            65
  CLUS_5                           8                            35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(5Q21.3) MUTATED       30     13      5     30    104      6
  DEL PEAK  8(5Q21.3) WILD-TYPE    123    100    172    101     24     49
D37V4, multiclass
        clus
vv       DEL PEAK  8(5Q21.3) MUTATED DEL PEAK  8(5Q21.3) WILD-TYPE
  CLUS_1                          30                           123
  CLUS_2                          13                           100
  CLUS_3                           5                           172
  CLUS_4                          30                           101
  CLUS_5                         104                            24
  CLUS_6                           6                            49
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(5Q21.3) MUTATED       77     13     23
  DEL PEAK  8(5Q21.3) WILD-TYPE     71    121     94
D37V5, multiclass
        clus
vv       DEL PEAK  8(5Q21.3) MUTATED DEL PEAK  8(5Q21.3) WILD-TYPE
  CLUS_1                          77                            71
  CLUS_2                          13                           121
  CLUS_3                          23                            94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(5Q21.3) MUTATED        5      4     62     11     22      9
  DEL PEAK  8(5Q21.3) WILD-TYPE     59     42     28     41     94     22
D37V6, multiclass
        clus
vv       DEL PEAK  8(5Q21.3) MUTATED DEL PEAK  8(5Q21.3) WILD-TYPE
  CLUS_1                           5                            59
  CLUS_2                           4                            42
  CLUS_3                          62                            28
  CLUS_4                          11                            41
  CLUS_5                          22                            94
  CLUS_6                           9                            22
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(5Q21.3) MUTATED       69    188     13
  DEL PEAK  8(5Q21.3) WILD-TYPE    490    116    199
D37V7, multiclass
        clus
vv       DEL PEAK  8(5Q21.3) MUTATED DEL PEAK  8(5Q21.3) WILD-TYPE
  CLUS_1                          69                           490
  CLUS_2                         188                           116
  CLUS_3                          13                           199
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(5Q21.3) MUTATED       34     40      1     29    142     24
  DEL PEAK  8(5Q21.3) WILD-TYPE    255    123     89    261     41     36
D37V8, multiclass
        clus
vv       DEL PEAK  8(5Q21.3) MUTATED DEL PEAK  8(5Q21.3) WILD-TYPE
  CLUS_1                          34                           255
  CLUS_2                          40                           123
  CLUS_3                           1                            89
  CLUS_4                          29                           261
  CLUS_5                         142                            41
  CLUS_6                          24                            36
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(5Q21.3) MUTATED      171     21     23     47
  DEL PEAK  8(5Q21.3) WILD-TYPE    134    191    246    228
D37V9, multiclass
        clus
vv       DEL PEAK  8(5Q21.3) MUTATED DEL PEAK  8(5Q21.3) WILD-TYPE
  CLUS_1                         171                           134
  CLUS_2                          21                           191
  CLUS_3                          23                           246
  CLUS_4                          47                           228
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(5Q21.3) MUTATED       61     67     13      8      4    109
  DEL PEAK  8(5Q21.3) WILD-TYPE    233     85    232    132     92     25
D37V10, multiclass
        clus
vv       DEL PEAK  8(5Q21.3) MUTATED DEL PEAK  8(5Q21.3) WILD-TYPE
  CLUS_1                          61                           233
  CLUS_2                          67                            85
  CLUS_3                          13                           232
  CLUS_4                           8                           132
  CLUS_5                           4                            92
  CLUS_6                         109                            25
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(5Q21.3) MUTATED       22    101     12     12     18
  DEL PEAK  8(5Q21.3) WILD-TYPE    158     38     87     99    115
D37V11, multiclass
        clus
vv       DEL PEAK  8(5Q21.3) MUTATED DEL PEAK  8(5Q21.3) WILD-TYPE
  CLUS_1                          22                           158
  CLUS_2                         101                            38
  CLUS_3                          12                            87
  CLUS_4                          12                            99
  CLUS_5                          18                           115
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(5Q21.3) MUTATED      124     30     11
  DEL PEAK  8(5Q21.3) WILD-TYPE    181    217     99
D37V12, multiclass
        clus
vv       DEL PEAK  8(5Q21.3) MUTATED DEL PEAK  8(5Q21.3) WILD-TYPE
  CLUS_1                         124                           181
  CLUS_2                          30                           217
  CLUS_3                          11                            99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(38) Variable = DEL PEAK  9(6P25.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(6P25.3) MUTATED        5      7     28     20     15      9
  DEL PEAK  9(6P25.3) WILD-TYPE     16     29     91     76     94     63
                               vv
clus                            CLUS_7 CLUS_8
  DEL PEAK  9(6P25.3) MUTATED        2      8
  DEL PEAK  9(6P25.3) WILD-TYPE     18     32
D38V1, multiclass
        clus
vv       DEL PEAK  9(6P25.3) MUTATED DEL PEAK  9(6P25.3) WILD-TYPE
  CLUS_1                           5                            16
  CLUS_2                           7                            29
  CLUS_3                          28                            91
  CLUS_4                          20                            76
  CLUS_5                          15                            94
  CLUS_6                           9                            63
  CLUS_7                           2                            18
  CLUS_8                           8                            32
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(6P25.3) MUTATED       22     28     19     17      8
  DEL PEAK  9(6P25.3) WILD-TYPE     79    124     95     71     50
D38V2, multiclass
        clus
vv       DEL PEAK  9(6P25.3) MUTATED DEL PEAK  9(6P25.3) WILD-TYPE
  CLUS_1                          22                            79
  CLUS_2                          28                           124
  CLUS_3                          19                            95
  CLUS_4                          17                            71
  CLUS_5                           8                            50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(6P25.3) MUTATED       81     40     15     57     11
  DEL PEAK  9(6P25.3) WILD-TYPE    194    367     83    200     32
D38V3, multiclass
        clus
vv       DEL PEAK  9(6P25.3) MUTATED DEL PEAK  9(6P25.3) WILD-TYPE
  CLUS_1                          81                           194
  CLUS_2                          40                           367
  CLUS_3                          15                            83
  CLUS_4                          57                           200
  CLUS_5                          11                            32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(6P25.3) MUTATED       41     23     20     18     35      7
  DEL PEAK  9(6P25.3) WILD-TYPE    112     90    157    113     93     48
D38V4, multiclass
        clus
vv       DEL PEAK  9(6P25.3) MUTATED DEL PEAK  9(6P25.3) WILD-TYPE
  CLUS_1                          41                           112
  CLUS_2                          23                            90
  CLUS_3                          20                           157
  CLUS_4                          18                           113
  CLUS_5                          35                            93
  CLUS_6                           7                            48
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(6P25.3) MUTATED       35     24     19
  DEL PEAK  9(6P25.3) WILD-TYPE    113    110     98
D38V5, multiclass
        clus
vv       DEL PEAK  9(6P25.3) MUTATED DEL PEAK  9(6P25.3) WILD-TYPE
  CLUS_1                          35                           113
  CLUS_2                          24                           110
  CLUS_3                          19                            98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(6P25.3) MUTATED        9      7     18      7     31      6
  DEL PEAK  9(6P25.3) WILD-TYPE     55     39     72     45     85     25
D38V6, multiclass
        clus
vv       DEL PEAK  9(6P25.3) MUTATED DEL PEAK  9(6P25.3) WILD-TYPE
  CLUS_1                           9                            55
  CLUS_2                           7                            39
  CLUS_3                          18                            72
  CLUS_4                           7                            45
  CLUS_5                          31                            85
  CLUS_6                           6                            25
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(6P25.3) MUTATED      119     63     21
  DEL PEAK  9(6P25.3) WILD-TYPE    440    241    191
D38V7, multiclass
        clus
vv       DEL PEAK  9(6P25.3) MUTATED DEL PEAK  9(6P25.3) WILD-TYPE
  CLUS_1                         119                           440
  CLUS_2                          63                           241
  CLUS_3                          21                           191
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(6P25.3) MUTATED       62     34      8     49     41      9
  DEL PEAK  9(6P25.3) WILD-TYPE    227    129     82    241    142     51
D38V8, multiclass
        clus
vv       DEL PEAK  9(6P25.3) MUTATED DEL PEAK  9(6P25.3) WILD-TYPE
  CLUS_1                          62                           227
  CLUS_2                          34                           129
  CLUS_3                           8                            82
  CLUS_4                          49                           241
  CLUS_5                          41                           142
  CLUS_6                           9                            51
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(6P25.3) MUTATED       66     24     47     63
  DEL PEAK  9(6P25.3) WILD-TYPE    239    188    222    212
D38V9, multiclass
        clus
vv       DEL PEAK  9(6P25.3) MUTATED DEL PEAK  9(6P25.3) WILD-TYPE
  CLUS_1                          66                           239
  CLUS_2                          24                           188
  CLUS_3                          47                           222
  CLUS_4                          63                           212
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(6P25.3) MUTATED       65     31     31     24     17     32
  DEL PEAK  9(6P25.3) WILD-TYPE    229    121    214    116     79    102
D38V10, multiclass
        clus
vv       DEL PEAK  9(6P25.3) MUTATED DEL PEAK  9(6P25.3) WILD-TYPE
  CLUS_1                          65                           229
  CLUS_2                          31                           121
  CLUS_3                          31                           214
  CLUS_4                          24                           116
  CLUS_5                          17                            79
  CLUS_6                          32                           102
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(6P25.3) MUTATED       45     30     16     21     22
  DEL PEAK  9(6P25.3) WILD-TYPE    135    109     83     90    111
D38V11, multiclass
        clus
vv       DEL PEAK  9(6P25.3) MUTATED DEL PEAK  9(6P25.3) WILD-TYPE
  CLUS_1                          45                           135
  CLUS_2                          30                           109
  CLUS_3                          16                            83
  CLUS_4                          21                            90
  CLUS_5                          22                           111
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(6P25.3) MUTATED       69     41     24
  DEL PEAK  9(6P25.3) WILD-TYPE    236    206     86
D38V12, multiclass
        clus
vv       DEL PEAK  9(6P25.3) MUTATED DEL PEAK  9(6P25.3) WILD-TYPE
  CLUS_1                          69                           236
  CLUS_2                          41                           206
  CLUS_3                          24                            86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(39) Variable = DEL PEAK 10(6Q15) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 10(6Q15) MUTATED        6     13     63     20     24     29      4
  DEL PEAK 10(6Q15) WILD-TYPE     15     23     56     76     85     43     16
                             vv
clus                          CLUS_8
  DEL PEAK 10(6Q15) MUTATED       16
  DEL PEAK 10(6Q15) WILD-TYPE     24
D39V1, multiclass
        clus
vv       DEL PEAK 10(6Q15) MUTATED DEL PEAK 10(6Q15) WILD-TYPE
  CLUS_1                         6                          15
  CLUS_2                        13                          23
  CLUS_3                        63                          56
  CLUS_4                        20                          76
  CLUS_5                        24                          85
  CLUS_6                        29                          43
  CLUS_7                         4                          16
  CLUS_8                        16                          24
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(6Q15) MUTATED       50     51     42     18     14
  DEL PEAK 10(6Q15) WILD-TYPE     51    101     72     70     44
D39V2, multiclass
        clus
vv       DEL PEAK 10(6Q15) MUTATED DEL PEAK 10(6Q15) WILD-TYPE
  CLUS_1                        50                          51
  CLUS_2                        51                         101
  CLUS_3                        42                          72
  CLUS_4                        18                          70
  CLUS_5                        14                          44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(6Q15) MUTATED      169     90     25     50     24
  DEL PEAK 10(6Q15) WILD-TYPE    106    317     73    207     19
D39V3, multiclass
        clus
vv       DEL PEAK 10(6Q15) MUTATED DEL PEAK 10(6Q15) WILD-TYPE
  CLUS_1                       169                         106
  CLUS_2                        90                         317
  CLUS_3                        25                          73
  CLUS_4                        50                         207
  CLUS_5                        24                          19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(6Q15) MUTATED       81     42     57     27     25     11
  DEL PEAK 10(6Q15) WILD-TYPE     72     71    120    104    103     44
D39V4, multiclass
        clus
vv       DEL PEAK 10(6Q15) MUTATED DEL PEAK 10(6Q15) WILD-TYPE
  CLUS_1                        81                          72
  CLUS_2                        42                          71
  CLUS_3                        57                         120
  CLUS_4                        27                         104
  CLUS_5                        25                         103
  CLUS_6                        11                          44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6Q15) MUTATED       46     50     41
  DEL PEAK 10(6Q15) WILD-TYPE    102     84     76
D39V5, multiclass
        clus
vv       DEL PEAK 10(6Q15) MUTATED DEL PEAK 10(6Q15) WILD-TYPE
  CLUS_1                        46                         102
  CLUS_2                        50                          84
  CLUS_3                        41                          76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(6Q15) MUTATED       17     16     24     17     52     11
  DEL PEAK 10(6Q15) WILD-TYPE     47     30     66     35     64     20
D39V6, multiclass
        clus
vv       DEL PEAK 10(6Q15) MUTATED DEL PEAK 10(6Q15) WILD-TYPE
  CLUS_1                        17                          47
  CLUS_2                        16                          30
  CLUS_3                        24                          66
  CLUS_4                        17                          35
  CLUS_5                        52                          64
  CLUS_6                        11                          20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6Q15) MUTATED      225     74     58
  DEL PEAK 10(6Q15) WILD-TYPE    334    230    154
D39V7, multiclass
        clus
vv       DEL PEAK 10(6Q15) MUTATED DEL PEAK 10(6Q15) WILD-TYPE
  CLUS_1                       225                         334
  CLUS_2                        74                         230
  CLUS_3                        58                         154
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(6Q15) MUTATED      123     64     26     93     30     21
  DEL PEAK 10(6Q15) WILD-TYPE    166     99     64    197    153     39
D39V8, multiclass
        clus
vv       DEL PEAK 10(6Q15) MUTATED DEL PEAK 10(6Q15) WILD-TYPE
  CLUS_1                       123                         166
  CLUS_2                        64                          99
  CLUS_3                        26                          64
  CLUS_4                        93                         197
  CLUS_5                        30                         153
  CLUS_6                        21                          39
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(6Q15) MUTATED       97     56     90    112
  DEL PEAK 10(6Q15) WILD-TYPE    208    156    179    163
D39V9, multiclass
        clus
vv       DEL PEAK 10(6Q15) MUTATED DEL PEAK 10(6Q15) WILD-TYPE
  CLUS_1                        97                         208
  CLUS_2                        56                         156
  CLUS_3                        90                         179
  CLUS_4                       112                         163
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(6Q15) MUTATED      119     41     72     57     43     23
  DEL PEAK 10(6Q15) WILD-TYPE    175    111    173     83     53    111
D39V10, multiclass
        clus
vv       DEL PEAK 10(6Q15) MUTATED DEL PEAK 10(6Q15) WILD-TYPE
  CLUS_1                       119                         175
  CLUS_2                        41                         111
  CLUS_3                        72                         173
  CLUS_4                        57                          83
  CLUS_5                        43                          53
  CLUS_6                        23                         111
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(6Q15) MUTATED       76     25     33     38     47
  DEL PEAK 10(6Q15) WILD-TYPE    104    114     66     73     86
D39V11, multiclass
        clus
vv       DEL PEAK 10(6Q15) MUTATED DEL PEAK 10(6Q15) WILD-TYPE
  CLUS_1                        76                         104
  CLUS_2                        25                         114
  CLUS_3                        33                          66
  CLUS_4                        38                          73
  CLUS_5                        47                          86
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6Q15) MUTATED      100     78     41
  DEL PEAK 10(6Q15) WILD-TYPE    205    169     69
D39V12, multiclass
        clus
vv       DEL PEAK 10(6Q15) MUTATED DEL PEAK 10(6Q15) WILD-TYPE
  CLUS_1                       100                         205
  CLUS_2                        78                         169
  CLUS_3                        41                          69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(40) Variable = DEL PEAK 11(6Q27) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 11(6Q27) MUTATED        9     13     57     34     25     27      7
  DEL PEAK 11(6Q27) WILD-TYPE     12     23     62     62     84     45     13
                             vv
clus                          CLUS_8
  DEL PEAK 11(6Q27) MUTATED       14
  DEL PEAK 11(6Q27) WILD-TYPE     26
D40V1, multiclass
        clus
vv       DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE
  CLUS_1                         9                          12
  CLUS_2                        13                          23
  CLUS_3                        57                          62
  CLUS_4                        34                          62
  CLUS_5                        25                          84
  CLUS_6                        27                          45
  CLUS_7                         7                          13
  CLUS_8                        14                          26
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(6Q27) MUTATED       48     47     46     32     13
  DEL PEAK 11(6Q27) WILD-TYPE     53    105     68     56     45
D40V2, multiclass
        clus
vv       DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE
  CLUS_1                        48                          53
  CLUS_2                        47                         105
  CLUS_3                        46                          68
  CLUS_4                        32                          56
  CLUS_5                        13                          45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(6Q27) MUTATED      141     98     25     87     24
  DEL PEAK 11(6Q27) WILD-TYPE    134    309     73    170     19
D40V3, multiclass
        clus
vv       DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE
  CLUS_1                       141                         134
  CLUS_2                        98                         309
  CLUS_3                        25                          73
  CLUS_4                        87                         170
  CLUS_5                        24                          19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(6Q27) MUTATED       70     34     49     40     53     15
  DEL PEAK 11(6Q27) WILD-TYPE     83     79    128     91     75     40
D40V4, multiclass
        clus
vv       DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE
  CLUS_1                        70                          83
  CLUS_2                        34                          79
  CLUS_3                        49                         128
  CLUS_4                        40                          91
  CLUS_5                        53                          75
  CLUS_6                        15                          40
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q27) MUTATED       66     45     36
  DEL PEAK 11(6Q27) WILD-TYPE     82     89     81
D40V5, multiclass
        clus
vv       DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE
  CLUS_1                        66                          82
  CLUS_2                        45                          89
  CLUS_3                        36                          81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(6Q27) MUTATED       19     16     34     13     52     13
  DEL PEAK 11(6Q27) WILD-TYPE     45     30     56     39     64     18
D40V6, multiclass
        clus
vv       DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE
  CLUS_1                        19                          45
  CLUS_2                        16                          30
  CLUS_3                        34                          56
  CLUS_4                        13                          39
  CLUS_5                        52                          64
  CLUS_6                        13                          18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q27) MUTATED      198    116     59
  DEL PEAK 11(6Q27) WILD-TYPE    361    188    153
D40V7, multiclass
        clus
vv       DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE
  CLUS_1                       198                         361
  CLUS_2                       116                         188
  CLUS_3                        59                         153
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(6Q27) MUTATED      106     58     25     92     63     29
  DEL PEAK 11(6Q27) WILD-TYPE    183    105     65    198    120     31
D40V8, multiclass
        clus
vv       DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE
  CLUS_1                       106                         183
  CLUS_2                        58                         105
  CLUS_3                        25                          65
  CLUS_4                        92                         198
  CLUS_5                        63                         120
  CLUS_6                        29                          31
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(6Q27) MUTATED      128     58     89     94
  DEL PEAK 11(6Q27) WILD-TYPE    177    154    180    181
D40V9, multiclass
        clus
vv       DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE
  CLUS_1                       128                         177
  CLUS_2                        58                         154
  CLUS_3                        89                         180
  CLUS_4                        94                         181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(6Q27) MUTATED      103     59     73     50     38     46
  DEL PEAK 11(6Q27) WILD-TYPE    191     93    172     90     58     88
D40V10, multiclass
        clus
vv       DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE
  CLUS_1                       103                         191
  CLUS_2                        59                          93
  CLUS_3                        73                         172
  CLUS_4                        50                          90
  CLUS_5                        38                          58
  CLUS_6                        46                          88
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(6Q27) MUTATED       65     51     29     37     43
  DEL PEAK 11(6Q27) WILD-TYPE    115     88     70     74     90
D40V11, multiclass
        clus
vv       DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE
  CLUS_1                        65                         115
  CLUS_2                        51                          88
  CLUS_3                        29                          70
  CLUS_4                        37                          74
  CLUS_5                        43                          90
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q27) MUTATED      108     78     39
  DEL PEAK 11(6Q27) WILD-TYPE    197    169     71
D40V12, multiclass
        clus
vv       DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE
  CLUS_1                       108                         197
  CLUS_2                        78                         169
  CLUS_3                        39                          71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(41) Variable = DEL PEAK 12(7P22.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(7P22.3) MUTATED        4      3     24     25      2     12
  DEL PEAK 12(7P22.3) WILD-TYPE     17     33     95     71    107     60
                               vv
clus                            CLUS_7 CLUS_8
  DEL PEAK 12(7P22.3) MUTATED        2      4
  DEL PEAK 12(7P22.3) WILD-TYPE     18     36
D41V1, multiclass
        clus
vv       DEL PEAK 12(7P22.3) MUTATED DEL PEAK 12(7P22.3) WILD-TYPE
  CLUS_1                           4                            17
  CLUS_2                           3                            33
  CLUS_3                          24                            95
  CLUS_4                          25                            71
  CLUS_5                           2                           107
  CLUS_6                          12                            60
  CLUS_7                           2                            18
  CLUS_8                           4                            36
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(7P22.3) MUTATED       20      8     22     24      2
  DEL PEAK 12(7P22.3) WILD-TYPE     81    144     92     64     56
D41V2, multiclass
        clus
vv       DEL PEAK 12(7P22.3) MUTATED DEL PEAK 12(7P22.3) WILD-TYPE
  CLUS_1                          20                            81
  CLUS_2                           8                           144
  CLUS_3                          22                            92
  CLUS_4                          24                            64
  CLUS_5                           2                            56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(7P22.3) MUTATED       55     12      3     65      2
  DEL PEAK 12(7P22.3) WILD-TYPE    220    395     95    192     41
D41V3, multiclass
        clus
vv       DEL PEAK 12(7P22.3) MUTATED DEL PEAK 12(7P22.3) WILD-TYPE
  CLUS_1                          55                           220
  CLUS_2                          12                           395
  CLUS_3                           3                            95
  CLUS_4                          65                           192
  CLUS_5                           2                            41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(7P22.3) MUTATED       17     16      8      5     30      4
  DEL PEAK 12(7P22.3) WILD-TYPE    136     97    169    126     98     51
D41V4, multiclass
        clus
vv       DEL PEAK 12(7P22.3) MUTATED DEL PEAK 12(7P22.3) WILD-TYPE
  CLUS_1                          17                           136
  CLUS_2                          16                            97
  CLUS_3                           8                           169
  CLUS_4                           5                           126
  CLUS_5                          30                            98
  CLUS_6                           4                            51
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(7P22.3) MUTATED       32     15     10
  DEL PEAK 12(7P22.3) WILD-TYPE    116    119    107
D41V5, multiclass
        clus
vv       DEL PEAK 12(7P22.3) MUTATED DEL PEAK 12(7P22.3) WILD-TYPE
  CLUS_1                          32                           116
  CLUS_2                          15                           119
  CLUS_3                          10                           107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(7P22.3) MUTATED        5      2     23      4     19      4
  DEL PEAK 12(7P22.3) WILD-TYPE     59     44     67     48     97     27
D41V6, multiclass
        clus
vv       DEL PEAK 12(7P22.3) MUTATED DEL PEAK 12(7P22.3) WILD-TYPE
  CLUS_1                           5                            59
  CLUS_2                           2                            44
  CLUS_3                          23                            67
  CLUS_4                           4                            48
  CLUS_5                          19                            97
  CLUS_6                           4                            27
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(7P22.3) MUTATED       63     68      4
  DEL PEAK 12(7P22.3) WILD-TYPE    496    236    208
D41V7, multiclass
        clus
vv       DEL PEAK 12(7P22.3) MUTATED DEL PEAK 12(7P22.3) WILD-TYPE
  CLUS_1                          63                           496
  CLUS_2                          68                           236
  CLUS_3                           4                           208
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(7P22.3) MUTATED       35     28      0     19     48      5
  DEL PEAK 12(7P22.3) WILD-TYPE    254    135     90    271    135     55
D41V8, multiclass
        clus
vv       DEL PEAK 12(7P22.3) MUTATED DEL PEAK 12(7P22.3) WILD-TYPE
  CLUS_1                          35                           254
  CLUS_2                          28                           135
  CLUS_3                           0                            90
  CLUS_4                          19                           271
  CLUS_5                          48                           135
  CLUS_6                           5                            55
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(7P22.3) MUTATED       68      4     26     35
  DEL PEAK 12(7P22.3) WILD-TYPE    237    208    243    240
D41V9, multiclass
        clus
vv       DEL PEAK 12(7P22.3) MUTATED DEL PEAK 12(7P22.3) WILD-TYPE
  CLUS_1                          68                           237
  CLUS_2                           4                           208
  CLUS_3                          26                           243
  CLUS_4                          35                           240
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(7P22.3) MUTATED       47     25      4      9      9     39
  DEL PEAK 12(7P22.3) WILD-TYPE    247    127    241    131     87     95
D41V10, multiclass
        clus
vv       DEL PEAK 12(7P22.3) MUTATED DEL PEAK 12(7P22.3) WILD-TYPE
  CLUS_1                          47                           247
  CLUS_2                          25                           127
  CLUS_3                           4                           241
  CLUS_4                           9                           131
  CLUS_5                           9                            87
  CLUS_6                          39                            95
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(7P22.3) MUTATED       18     34      6      6     11
  DEL PEAK 12(7P22.3) WILD-TYPE    162    105     93    105    122
D41V11, multiclass
        clus
vv       DEL PEAK 12(7P22.3) MUTATED DEL PEAK 12(7P22.3) WILD-TYPE
  CLUS_1                          18                           162
  CLUS_2                          34                           105
  CLUS_3                           6                            93
  CLUS_4                           6                           105
  CLUS_5                          11                           122
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(7P22.3) MUTATED       53     16      6
  DEL PEAK 12(7P22.3) WILD-TYPE    252    231    104
D41V12, multiclass
        clus
vv       DEL PEAK 12(7P22.3) MUTATED DEL PEAK 12(7P22.3) WILD-TYPE
  CLUS_1                          53                           252
  CLUS_2                          16                           231
  CLUS_3                           6                           104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(42) Variable = DEL PEAK 13(7Q36.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(7Q36.1) MUTATED        6      7     22     21     10     26
  DEL PEAK 13(7Q36.1) WILD-TYPE     15     29     97     75     99     46
                               vv
clus                            CLUS_7 CLUS_8
  DEL PEAK 13(7Q36.1) MUTATED        4      6
  DEL PEAK 13(7Q36.1) WILD-TYPE     16     34
D42V1, multiclass
        clus
vv       DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE
  CLUS_1                           6                            15
  CLUS_2                           7                            29
  CLUS_3                          22                            97
  CLUS_4                          21                            75
  CLUS_5                          10                            99
  CLUS_6                          26                            46
  CLUS_7                           4                            16
  CLUS_8                           6                            34
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(7Q36.1) MUTATED       16     17     45     17      7
  DEL PEAK 13(7Q36.1) WILD-TYPE     85    135     69     71     51
D42V2, multiclass
        clus
vv       DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE
  CLUS_1                          16                            85
  CLUS_2                          17                           135
  CLUS_3                          45                            69
  CLUS_4                          17                            71
  CLUS_5                           7                            51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(7Q36.1) MUTATED       72     33     15     74      6
  DEL PEAK 13(7Q36.1) WILD-TYPE    203    374     83    183     37
D42V3, multiclass
        clus
vv       DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE
  CLUS_1                          72                           203
  CLUS_2                          33                           374
  CLUS_3                          15                            83
  CLUS_4                          74                           183
  CLUS_5                           6                            37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(7Q36.1) MUTATED       26     22     22     15     30     11
  DEL PEAK 13(7Q36.1) WILD-TYPE    127     91    155    116     98     44
D42V4, multiclass
        clus
vv       DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE
  CLUS_1                          26                           127
  CLUS_2                          22                            91
  CLUS_3                          22                           155
  CLUS_4                          15                           116
  CLUS_5                          30                            98
  CLUS_6                          11                            44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(7Q36.1) MUTATED       33     24     19
  DEL PEAK 13(7Q36.1) WILD-TYPE    115    110     98
D42V5, multiclass
        clus
vv       DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE
  CLUS_1                          33                           115
  CLUS_2                          24                           110
  CLUS_3                          19                            98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(7Q36.1) MUTATED        8      8     19      6     23     12
  DEL PEAK 13(7Q36.1) WILD-TYPE     56     38     71     46     93     19
D42V6, multiclass
        clus
vv       DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE
  CLUS_1                           8                            56
  CLUS_2                           8                            38
  CLUS_3                          19                            71
  CLUS_4                           6                            46
  CLUS_5                          23                            93
  CLUS_6                          12                            19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(7Q36.1) MUTATED       99     81     18
  DEL PEAK 13(7Q36.1) WILD-TYPE    460    223    194
D42V7, multiclass
        clus
vv       DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE
  CLUS_1                          99                           460
  CLUS_2                          81                           223
  CLUS_3                          18                           194
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(7Q36.1) MUTATED       53     46      5     36     40     18
  DEL PEAK 13(7Q36.1) WILD-TYPE    236    117     85    254    143     42
D42V8, multiclass
        clus
vv       DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE
  CLUS_1                          53                           236
  CLUS_2                          46                           117
  CLUS_3                           5                            85
  CLUS_4                          36                           254
  CLUS_5                          40                           143
  CLUS_6                          18                            42
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(7Q36.1) MUTATED       83     17     37     58
  DEL PEAK 13(7Q36.1) WILD-TYPE    222    195    232    217
D42V9, multiclass
        clus
vv       DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE
  CLUS_1                          83                           222
  CLUS_2                          17                           195
  CLUS_3                          37                           232
  CLUS_4                          58                           217
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(7Q36.1) MUTATED       66     46     19     18     15     31
  DEL PEAK 13(7Q36.1) WILD-TYPE    228    106    226    122     81    103
D42V10, multiclass
        clus
vv       DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE
  CLUS_1                          66                           228
  CLUS_2                          46                           106
  CLUS_3                          19                           226
  CLUS_4                          18                           122
  CLUS_5                          15                            81
  CLUS_6                          31                           103
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(7Q36.1) MUTATED       41     39      9     11     17
  DEL PEAK 13(7Q36.1) WILD-TYPE    139    100     90    100    116
D42V11, multiclass
        clus
vv       DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE
  CLUS_1                          41                           139
  CLUS_2                          39                           100
  CLUS_3                           9                            90
  CLUS_4                          11                           100
  CLUS_5                          17                           116
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(7Q36.1) MUTATED       76     21     20
  DEL PEAK 13(7Q36.1) WILD-TYPE    229    226     90
D42V12, multiclass
        clus
vv       DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE
  CLUS_1                          76                           229
  CLUS_2                          21                           226
  CLUS_3                          20                            90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(43) Variable = DEL PEAK 14(8P23.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(8P23.2) MUTATED       12     15     78     64     29     47
  DEL PEAK 14(8P23.2) WILD-TYPE      9     21     41     32     80     25
                               vv
clus                            CLUS_7 CLUS_8
  DEL PEAK 14(8P23.2) MUTATED       13     18
  DEL PEAK 14(8P23.2) WILD-TYPE      7     22
D43V1, multiclass
        clus
vv       DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                          12                             9
  CLUS_2                          15                            21
  CLUS_3                          78                            41
  CLUS_4                          64                            32
  CLUS_5                          29                            80
  CLUS_6                          47                            25
  CLUS_7                          13                             7
  CLUS_8                          18                            22
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(8P23.2) MUTATED       67     59     78     57     15
  DEL PEAK 14(8P23.2) WILD-TYPE     34     93     36     31     43
D43V2, multiclass
        clus
vv       DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                          67                            34
  CLUS_2                          59                            93
  CLUS_3                          78                            36
  CLUS_4                          57                            31
  CLUS_5                          15                            43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(8P23.2) MUTATED      188    134     22    180     34
  DEL PEAK 14(8P23.2) WILD-TYPE     87    273     76     77      9
D43V3, multiclass
        clus
vv       DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                         188                            87
  CLUS_2                         134                           273
  CLUS_3                          22                            76
  CLUS_4                         180                            77
  CLUS_5                          34                             9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(8P23.2) MUTATED       98     59     52     58     84     23
  DEL PEAK 14(8P23.2) WILD-TYPE     55     54    125     73     44     32
D43V4, multiclass
        clus
vv       DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                          98                            55
  CLUS_2                          59                            54
  CLUS_3                          52                           125
  CLUS_4                          58                            73
  CLUS_5                          84                            44
  CLUS_6                          23                            32
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(8P23.2) MUTATED       95     63     68
  DEL PEAK 14(8P23.2) WILD-TYPE     53     71     49
D43V5, multiclass
        clus
vv       DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                          95                            53
  CLUS_2                          63                            71
  CLUS_3                          68                            49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(8P23.2) MUTATED       22     21     58     32     71     22
  DEL PEAK 14(8P23.2) WILD-TYPE     42     25     32     20     45      9
D43V6, multiclass
        clus
vv       DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                          22                            42
  CLUS_2                          21                            25
  CLUS_3                          58                            32
  CLUS_4                          32                            20
  CLUS_5                          71                            45
  CLUS_6                          22                             9
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(8P23.2) MUTATED      280    201     73
  DEL PEAK 14(8P23.2) WILD-TYPE    279    103    139
D43V7, multiclass
        clus
vv       DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                         280                           279
  CLUS_2                         201                           103
  CLUS_3                          73                           139
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(8P23.2) MUTATED      146    109     25    114    113     47
  DEL PEAK 14(8P23.2) WILD-TYPE    143     54     65    176     70     13
D43V8, multiclass
        clus
vv       DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                         146                           143
  CLUS_2                         109                            54
  CLUS_3                          25                            65
  CLUS_4                         114                           176
  CLUS_5                         113                            70
  CLUS_6                          47                            13
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(8P23.2) MUTATED      200     79    116    151
  DEL PEAK 14(8P23.2) WILD-TYPE    105    133    153    124
D43V9, multiclass
        clus
vv       DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                         200                           105
  CLUS_2                          79                           133
  CLUS_3                         116                           153
  CLUS_4                         151                           124
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(8P23.2) MUTATED      168    103     97     50     45     83
  DEL PEAK 14(8P23.2) WILD-TYPE    126     49    148     90     51     51
D43V10, multiclass
        clus
vv       DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                         168                           126
  CLUS_2                         103                            49
  CLUS_3                          97                           148
  CLUS_4                          50                            90
  CLUS_5                          45                            51
  CLUS_6                          83                            51
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(8P23.2) MUTATED      100     92     43     39     58
  DEL PEAK 14(8P23.2) WILD-TYPE     80     47     56     72     75
D43V11, multiclass
        clus
vv       DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                         100                            80
  CLUS_2                          92                            47
  CLUS_3                          43                            56
  CLUS_4                          39                            72
  CLUS_5                          58                            75
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(8P23.2) MUTATED      187    105     40
  DEL PEAK 14(8P23.2) WILD-TYPE    118    142     70
D43V12, multiclass
        clus
vv       DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                         187                           118
  CLUS_2                         105                           142
  CLUS_3                          40                            70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(44) Variable = DEL PEAK 15(8P11.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(8P11.21) MUTATED        4      3     22     24      8     26
  DEL PEAK 15(8P11.21) WILD-TYPE     17     33     97     72    101     46
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 15(8P11.21) MUTATED        7      7
  DEL PEAK 15(8P11.21) WILD-TYPE     13     33
D44V1, multiclass
        clus
vv       DEL PEAK 15(8P11.21) MUTATED DEL PEAK 15(8P11.21) WILD-TYPE
  CLUS_1                            4                             17
  CLUS_2                            3                             33
  CLUS_3                           22                             97
  CLUS_4                           24                             72
  CLUS_5                            8                            101
  CLUS_6                           26                             46
  CLUS_7                            7                             13
  CLUS_8                            7                             33
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(8P11.21) MUTATED       20     18     37     21      5
  DEL PEAK 15(8P11.21) WILD-TYPE     81    134     77     67     53
D44V2, multiclass
        clus
vv       DEL PEAK 15(8P11.21) MUTATED DEL PEAK 15(8P11.21) WILD-TYPE
  CLUS_1                           20                             81
  CLUS_2                           18                            134
  CLUS_3                           37                             77
  CLUS_4                           21                             67
  CLUS_5                            5                             53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(8P11.21) MUTATED       62     45     14     79      0
  DEL PEAK 15(8P11.21) WILD-TYPE    213    362     84    178     43
D44V3, multiclass
        clus
vv       DEL PEAK 15(8P11.21) MUTATED DEL PEAK 15(8P11.21) WILD-TYPE
  CLUS_1                           62                            213
  CLUS_2                           45                            362
  CLUS_3                           14                             84
  CLUS_4                           79                            178
  CLUS_5                            0                             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(8P11.21) MUTATED       32     21     15     21     29      6
  DEL PEAK 15(8P11.21) WILD-TYPE    121     92    162    110     99     49
D44V4, multiclass
        clus
vv       DEL PEAK 15(8P11.21) MUTATED DEL PEAK 15(8P11.21) WILD-TYPE
  CLUS_1                           32                            121
  CLUS_2                           21                             92
  CLUS_3                           15                            162
  CLUS_4                           21                            110
  CLUS_5                           29                             99
  CLUS_6                            6                             49
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(8P11.21) MUTATED       42     19     25
  DEL PEAK 15(8P11.21) WILD-TYPE    106    115     92
D44V5, multiclass
        clus
vv       DEL PEAK 15(8P11.21) MUTATED DEL PEAK 15(8P11.21) WILD-TYPE
  CLUS_1                           42                            106
  CLUS_2                           19                            115
  CLUS_3                           25                             92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(8P11.21) MUTATED        5      9     21     10     25     16
  DEL PEAK 15(8P11.21) WILD-TYPE     59     37     69     42     91     15
D44V6, multiclass
        clus
vv       DEL PEAK 15(8P11.21) MUTATED DEL PEAK 15(8P11.21) WILD-TYPE
  CLUS_1                            5                             59
  CLUS_2                            9                             37
  CLUS_3                           21                             69
  CLUS_4                           10                             42
  CLUS_5                           25                             91
  CLUS_6                           16                             15
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(8P11.21) MUTATED       93     83     24
  DEL PEAK 15(8P11.21) WILD-TYPE    466    221    188
D44V7, multiclass
        clus
vv       DEL PEAK 15(8P11.21) MUTATED DEL PEAK 15(8P11.21) WILD-TYPE
  CLUS_1                           93                            466
  CLUS_2                           83                            221
  CLUS_3                           24                            188
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(8P11.21) MUTATED       42     54      3     41     35     25
  DEL PEAK 15(8P11.21) WILD-TYPE    247    109     87    249    148     35
D44V8, multiclass
        clus
vv       DEL PEAK 15(8P11.21) MUTATED DEL PEAK 15(8P11.21) WILD-TYPE
  CLUS_1                           42                            247
  CLUS_2                           54                            109
  CLUS_3                            3                             87
  CLUS_4                           41                            249
  CLUS_5                           35                            148
  CLUS_6                           25                             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(8P11.21) MUTATED       78     21     33     66
  DEL PEAK 15(8P11.21) WILD-TYPE    227    191    236    209
D44V9, multiclass
        clus
vv       DEL PEAK 15(8P11.21) MUTATED DEL PEAK 15(8P11.21) WILD-TYPE
  CLUS_1                           78                            227
  CLUS_2                           21                            191
  CLUS_3                           33                            236
  CLUS_4                           66                            209
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(8P11.21) MUTATED       64     57     19     24     12     22
  DEL PEAK 15(8P11.21) WILD-TYPE    230     95    226    116     84    112
D44V10, multiclass
        clus
vv       DEL PEAK 15(8P11.21) MUTATED DEL PEAK 15(8P11.21) WILD-TYPE
  CLUS_1                           64                            230
  CLUS_2                           57                             95
  CLUS_3                           19                            226
  CLUS_4                           24                            116
  CLUS_5                           12                             84
  CLUS_6                           22                            112
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(8P11.21) MUTATED       48     32     15     14     16
  DEL PEAK 15(8P11.21) WILD-TYPE    132    107     84     97    117
D44V11, multiclass
        clus
vv       DEL PEAK 15(8P11.21) MUTATED DEL PEAK 15(8P11.21) WILD-TYPE
  CLUS_1                           48                            132
  CLUS_2                           32                            107
  CLUS_3                           15                             84
  CLUS_4                           14                             97
  CLUS_5                           16                            117
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(8P11.21) MUTATED       77     31     17
  DEL PEAK 15(8P11.21) WILD-TYPE    228    216     93
D44V12, multiclass
        clus
vv       DEL PEAK 15(8P11.21) MUTATED DEL PEAK 15(8P11.21) WILD-TYPE
  CLUS_1                           77                            228
  CLUS_2                           31                            216
  CLUS_3                           17                             93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(45) Variable = DEL PEAK 16(9P23) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 16(9P23) MUTATED        9     15     57     21     22     34     10
  DEL PEAK 16(9P23) WILD-TYPE     12     21     62     75     87     38     10
                             vv
clus                          CLUS_8
  DEL PEAK 16(9P23) MUTATED        5
  DEL PEAK 16(9P23) WILD-TYPE     35
D45V1, multiclass
        clus
vv       DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE
  CLUS_1                         9                          12
  CLUS_2                        15                          21
  CLUS_3                        57                          62
  CLUS_4                        21                          75
  CLUS_5                        22                          87
  CLUS_6                        34                          38
  CLUS_7                        10                          10
  CLUS_8                         5                          35
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(9P23) MUTATED       49     36     61     17     10
  DEL PEAK 16(9P23) WILD-TYPE     52    116     53     71     48
D45V2, multiclass
        clus
vv       DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE
  CLUS_1                        49                          52
  CLUS_2                        36                         116
  CLUS_3                        61                          53
  CLUS_4                        17                          71
  CLUS_5                        10                          48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(9P23) MUTATED      167     46     15     88      9
  DEL PEAK 16(9P23) WILD-TYPE    108    361     83    169     34
D45V3, multiclass
        clus
vv       DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE
  CLUS_1                       167                         108
  CLUS_2                        46                         361
  CLUS_3                        15                          83
  CLUS_4                        88                         169
  CLUS_5                         9                          34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(9P23) MUTATED       82     48     18     20     34     12
  DEL PEAK 16(9P23) WILD-TYPE     71     65    159    111     94     43
D45V4, multiclass
        clus
vv       DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE
  CLUS_1                        82                          71
  CLUS_2                        48                          65
  CLUS_3                        18                         159
  CLUS_4                        20                         111
  CLUS_5                        34                          94
  CLUS_6                        12                          43
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(9P23) MUTATED       66     43     32
  DEL PEAK 16(9P23) WILD-TYPE     82     91     85
D45V5, multiclass
        clus
vv       DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE
  CLUS_1                        66                          82
  CLUS_2                        43                          91
  CLUS_3                        32                          85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(9P23) MUTATED       15     15     26     15     55     15
  DEL PEAK 16(9P23) WILD-TYPE     49     31     64     37     61     16
D45V6, multiclass
        clus
vv       DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE
  CLUS_1                        15                          49
  CLUS_2                        15                          31
  CLUS_3                        26                          64
  CLUS_4                        15                          37
  CLUS_5                        55                          61
  CLUS_6                        15                          16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(9P23) MUTATED      195     95     34
  DEL PEAK 16(9P23) WILD-TYPE    364    209    178
D45V7, multiclass
        clus
vv       DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE
  CLUS_1                       195                         364
  CLUS_2                        95                         209
  CLUS_3                        34                         178
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(9P23) MUTATED      104     83      8     65     35     29
  DEL PEAK 16(9P23) WILD-TYPE    185     80     82    225    148     31
D45V8, multiclass
        clus
vv       DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE
  CLUS_1                       104                         185
  CLUS_2                        83                          80
  CLUS_3                         8                          82
  CLUS_4                        65                         225
  CLUS_5                        35                         148
  CLUS_6                        29                          31
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(9P23) MUTATED      112     31     68    107
  DEL PEAK 16(9P23) WILD-TYPE    193    181    201    168
D45V9, multiclass
        clus
vv       DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE
  CLUS_1                       112                         193
  CLUS_2                        31                         181
  CLUS_3                        68                         201
  CLUS_4                       107                         168
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(9P23) MUTATED      132     69     39     32     24     22
  DEL PEAK 16(9P23) WILD-TYPE    162     83    206    108     72    112
D45V10, multiclass
        clus
vv       DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE
  CLUS_1                       132                         162
  CLUS_2                        69                          83
  CLUS_3                        39                         206
  CLUS_4                        32                         108
  CLUS_5                        24                          72
  CLUS_6                        22                         112
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(9P23) MUTATED       74     39     23     20     33
  DEL PEAK 16(9P23) WILD-TYPE    106    100     76     91    100
D45V11, multiclass
        clus
vv       DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE
  CLUS_1                        74                         106
  CLUS_2                        39                         100
  CLUS_3                        23                          76
  CLUS_4                        20                          91
  CLUS_5                        33                         100
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(9P23) MUTATED      112     56     21
  DEL PEAK 16(9P23) WILD-TYPE    193    191     89
D45V12, multiclass
        clus
vv       DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE
  CLUS_1                       112                         193
  CLUS_2                        56                         191
  CLUS_3                        21                          89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(46) Variable = DEL PEAK 17(9P21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(9P21.3) MUTATED        9     12     62     33     24     38
  DEL PEAK 17(9P21.3) WILD-TYPE     12     24     57     63     85     34
                               vv
clus                            CLUS_7 CLUS_8
  DEL PEAK 17(9P21.3) MUTATED        8      6
  DEL PEAK 17(9P21.3) WILD-TYPE     12     34
D46V1, multiclass
        clus
vv       DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE
  CLUS_1                           9                            12
  CLUS_2                          12                            24
  CLUS_3                          62                            57
  CLUS_4                          33                            63
  CLUS_5                          24                            85
  CLUS_6                          38                            34
  CLUS_7                           8                            12
  CLUS_8                           6                            34
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(9P21.3) MUTATED       53     34     65     28     12
  DEL PEAK 17(9P21.3) WILD-TYPE     48    118     49     60     46
D46V2, multiclass
        clus
vv       DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE
  CLUS_1                          53                            48
  CLUS_2                          34                           118
  CLUS_3                          65                            49
  CLUS_4                          28                            60
  CLUS_5                          12                            46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(9P21.3) MUTATED      170     54     19    112      9
  DEL PEAK 17(9P21.3) WILD-TYPE    105    353     79    145     34
D46V3, multiclass
        clus
vv       DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE
  CLUS_1                         170                           105
  CLUS_2                          54                           353
  CLUS_3                          19                            79
  CLUS_4                         112                           145
  CLUS_5                           9                            34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(9P21.3) MUTATED       82     47     22     25     48     10
  DEL PEAK 17(9P21.3) WILD-TYPE     71     66    155    106     80     45
D46V4, multiclass
        clus
vv       DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE
  CLUS_1                          82                            71
  CLUS_2                          47                            66
  CLUS_3                          22                           155
  CLUS_4                          25                           106
  CLUS_5                          48                            80
  CLUS_6                          10                            45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(9P21.3) MUTATED       73     45     37
  DEL PEAK 17(9P21.3) WILD-TYPE     75     89     80
D46V5, multiclass
        clus
vv       DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE
  CLUS_1                          73                            75
  CLUS_2                          45                            89
  CLUS_3                          37                            80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(9P21.3) MUTATED       17     15     34     17     55     17
  DEL PEAK 17(9P21.3) WILD-TYPE     47     31     56     35     61     14
D46V6, multiclass
        clus
vv       DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE
  CLUS_1                          17                            47
  CLUS_2                          15                            31
  CLUS_3                          34                            56
  CLUS_4                          17                            35
  CLUS_5                          55                            61
  CLUS_6                          17                            14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(9P21.3) MUTATED      205    123     32
  DEL PEAK 17(9P21.3) WILD-TYPE    354    181    180
D46V7, multiclass
        clus
vv       DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE
  CLUS_1                         205                           354
  CLUS_2                         123                           181
  CLUS_3                          32                           180
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(9P21.3) MUTATED      113     88      6     62     60     31
  DEL PEAK 17(9P21.3) WILD-TYPE    176     75     84    228    123     29
D46V8, multiclass
        clus
vv       DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE
  CLUS_1                         113                           176
  CLUS_2                          88                            75
  CLUS_3                           6                            84
  CLUS_4                          62                           228
  CLUS_5                          60                           123
  CLUS_6                          31                            29
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(9P21.3) MUTATED      132     34     73    115
  DEL PEAK 17(9P21.3) WILD-TYPE    173    178    196    160
D46V9, multiclass
        clus
vv       DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE
  CLUS_1                         132                           173
  CLUS_2                          34                           178
  CLUS_3                          73                           196
  CLUS_4                         115                           160
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(9P21.3) MUTATED      137     80     36     34     28     39
  DEL PEAK 17(9P21.3) WILD-TYPE    157     72    209    106     68     95
D46V10, multiclass
        clus
vv       DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE
  CLUS_1                         137                           157
  CLUS_2                          80                            72
  CLUS_3                          36                           209
  CLUS_4                          34                           106
  CLUS_5                          28                            68
  CLUS_6                          39                            95
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(9P21.3) MUTATED       76     54     24     25     30
  DEL PEAK 17(9P21.3) WILD-TYPE    104     85     75     86    103
D46V11, multiclass
        clus
vv       DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE
  CLUS_1                          76                           104
  CLUS_2                          54                            85
  CLUS_3                          24                            75
  CLUS_4                          25                            86
  CLUS_5                          30                           103
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(9P21.3) MUTATED      128     58     23
  DEL PEAK 17(9P21.3) WILD-TYPE    177    189     87
D46V12, multiclass
        clus
vv       DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE
  CLUS_1                         128                           177
  CLUS_2                          58                           189
  CLUS_3                          23                            87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(47) Variable = DEL PEAK 18(9Q21.11) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(9Q21.11) MUTATED        5      6     42     41     24     27
  DEL PEAK 18(9Q21.11) WILD-TYPE     16     30     77     55     85     45
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 18(9Q21.11) MUTATED        7      5
  DEL PEAK 18(9Q21.11) WILD-TYPE     13     35
D47V1, multiclass
        clus
vv       DEL PEAK 18(9Q21.11) MUTATED DEL PEAK 18(9Q21.11) WILD-TYPE
  CLUS_1                            5                             16
  CLUS_2                            6                             30
  CLUS_3                           42                             77
  CLUS_4                           41                             55
  CLUS_5                           24                             85
  CLUS_6                           27                             45
  CLUS_7                            7                             13
  CLUS_8                            5                             35
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(9Q21.11) MUTATED       37     25     50     35     10
  DEL PEAK 18(9Q21.11) WILD-TYPE     64    127     64     53     48
D47V2, multiclass
        clus
vv       DEL PEAK 18(9Q21.11) MUTATED DEL PEAK 18(9Q21.11) WILD-TYPE
  CLUS_1                           37                             64
  CLUS_2                           25                            127
  CLUS_3                           50                             64
  CLUS_4                           35                             53
  CLUS_5                           10                             48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(9Q21.11) MUTATED      115     44     18    105     12
  DEL PEAK 18(9Q21.11) WILD-TYPE    160    363     80    152     31
D47V3, multiclass
        clus
vv       DEL PEAK 18(9Q21.11) MUTATED DEL PEAK 18(9Q21.11) WILD-TYPE
  CLUS_1                          115                            160
  CLUS_2                           44                            363
  CLUS_3                           18                             80
  CLUS_4                          105                            152
  CLUS_5                           12                             31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(9Q21.11) MUTATED       62     28     17     26     51      7
  DEL PEAK 18(9Q21.11) WILD-TYPE     91     85    160    105     77     48
D47V4, multiclass
        clus
vv       DEL PEAK 18(9Q21.11) MUTATED DEL PEAK 18(9Q21.11) WILD-TYPE
  CLUS_1                           62                             91
  CLUS_2                           28                             85
  CLUS_3                           17                            160
  CLUS_4                           26                            105
  CLUS_5                           51                             77
  CLUS_6                            7                             48
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(9Q21.11) MUTATED       68     35     22
  DEL PEAK 18(9Q21.11) WILD-TYPE     80     99     95
D47V5, multiclass
        clus
vv       DEL PEAK 18(9Q21.11) MUTATED DEL PEAK 18(9Q21.11) WILD-TYPE
  CLUS_1                           68                             80
  CLUS_2                           35                             99
  CLUS_3                           22                             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(9Q21.11) MUTATED       15     12     38      9     39     12
  DEL PEAK 18(9Q21.11) WILD-TYPE     49     34     52     43     77     19
D47V6, multiclass
        clus
vv       DEL PEAK 18(9Q21.11) MUTATED DEL PEAK 18(9Q21.11) WILD-TYPE
  CLUS_1                           15                             49
  CLUS_2                           12                             34
  CLUS_3                           38                             52
  CLUS_4                            9                             43
  CLUS_5                           39                             77
  CLUS_6                           12                             19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(9Q21.11) MUTATED      157    110     26
  DEL PEAK 18(9Q21.11) WILD-TYPE    402    194    186
D47V7, multiclass
        clus
vv       DEL PEAK 18(9Q21.11) MUTATED DEL PEAK 18(9Q21.11) WILD-TYPE
  CLUS_1                          157                            402
  CLUS_2                          110                            194
  CLUS_3                           26                            186
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(9Q21.11) MUTATED       85     59      5     52     69     23
  DEL PEAK 18(9Q21.11) WILD-TYPE    204    104     85    238    114     37
D47V8, multiclass
        clus
vv       DEL PEAK 18(9Q21.11) MUTATED DEL PEAK 18(9Q21.11) WILD-TYPE
  CLUS_1                           85                            204
  CLUS_2                           59                            104
  CLUS_3                            5                             85
  CLUS_4                           52                            238
  CLUS_5                           69                            114
  CLUS_6                           23                             37
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(9Q21.11) MUTATED      128     25     53     81
  DEL PEAK 18(9Q21.11) WILD-TYPE    177    187    216    194
D47V9, multiclass
        clus
vv       DEL PEAK 18(9Q21.11) MUTATED DEL PEAK 18(9Q21.11) WILD-TYPE
  CLUS_1                          128                            177
  CLUS_2                           25                            187
  CLUS_3                           53                            216
  CLUS_4                           81                            194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(9Q21.11) MUTATED      101     61     25     25     20     55
  DEL PEAK 18(9Q21.11) WILD-TYPE    193     91    220    115     76     79
D47V10, multiclass
        clus
vv       DEL PEAK 18(9Q21.11) MUTATED DEL PEAK 18(9Q21.11) WILD-TYPE
  CLUS_1                          101                            193
  CLUS_2                           61                             91
  CLUS_3                           25                            220
  CLUS_4                           25                            115
  CLUS_5                           20                             76
  CLUS_6                           55                             79
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(9Q21.11) MUTATED       55     56     21     15     22
  DEL PEAK 18(9Q21.11) WILD-TYPE    125     83     78     96    111
D47V11, multiclass
        clus
vv       DEL PEAK 18(9Q21.11) MUTATED DEL PEAK 18(9Q21.11) WILD-TYPE
  CLUS_1                           55                            125
  CLUS_2                           56                             83
  CLUS_3                           21                             78
  CLUS_4                           15                             96
  CLUS_5                           22                            111
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(9Q21.11) MUTATED      107     45     17
  DEL PEAK 18(9Q21.11) WILD-TYPE    198    202     93
D47V12, multiclass
        clus
vv       DEL PEAK 18(9Q21.11) MUTATED DEL PEAK 18(9Q21.11) WILD-TYPE
  CLUS_1                          107                            198
  CLUS_2                           45                            202
  CLUS_3                           17                             93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(48) Variable = DEL PEAK 19(9Q34.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(9Q34.2) MUTATED        6      4     40     55     23     18
  DEL PEAK 19(9Q34.2) WILD-TYPE     15     32     79     41     86     54
                               vv
clus                            CLUS_7 CLUS_8
  DEL PEAK 19(9Q34.2) MUTATED        7      4
  DEL PEAK 19(9Q34.2) WILD-TYPE     13     36
D48V1, multiclass
        clus
vv       DEL PEAK 19(9Q34.2) MUTATED DEL PEAK 19(9Q34.2) WILD-TYPE
  CLUS_1                           6                            15
  CLUS_2                           4                            32
  CLUS_3                          40                            79
  CLUS_4                          55                            41
  CLUS_5                          23                            86
  CLUS_6                          18                            54
  CLUS_7                           7                            13
  CLUS_8                           4                            36
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(9Q34.2) MUTATED       36     23     38     50     10
  DEL PEAK 19(9Q34.2) WILD-TYPE     65    129     76     38     48
D48V2, multiclass
        clus
vv       DEL PEAK 19(9Q34.2) MUTATED DEL PEAK 19(9Q34.2) WILD-TYPE
  CLUS_1                          36                            65
  CLUS_2                          23                           129
  CLUS_3                          38                            76
  CLUS_4                          50                            38
  CLUS_5                          10                            48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(9Q34.2) MUTATED      103     30     14    138     12
  DEL PEAK 19(9Q34.2) WILD-TYPE    172    377     84    119     31
D48V3, multiclass
        clus
vv       DEL PEAK 19(9Q34.2) MUTATED DEL PEAK 19(9Q34.2) WILD-TYPE
  CLUS_1                         103                           172
  CLUS_2                          30                           377
  CLUS_3                          14                            84
  CLUS_4                         138                           119
  CLUS_5                          12                            31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(9Q34.2) MUTATED       49     29     15     21     71      7
  DEL PEAK 19(9Q34.2) WILD-TYPE    104     84    162    110     57     48
D48V4, multiclass
        clus
vv       DEL PEAK 19(9Q34.2) MUTATED DEL PEAK 19(9Q34.2) WILD-TYPE
  CLUS_1                          49                           104
  CLUS_2                          29                            84
  CLUS_3                          15                           162
  CLUS_4                          21                           110
  CLUS_5                          71                            57
  CLUS_6                           7                            48
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(9Q34.2) MUTATED       68     34     21
  DEL PEAK 19(9Q34.2) WILD-TYPE     80    100     96
D48V5, multiclass
        clus
vv       DEL PEAK 19(9Q34.2) MUTATED DEL PEAK 19(9Q34.2) WILD-TYPE
  CLUS_1                          68                            80
  CLUS_2                          34                           100
  CLUS_3                          21                            96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(9Q34.2) MUTATED       12     12     50      7     39      3
  DEL PEAK 19(9Q34.2) WILD-TYPE     52     34     40     45     77     28
D48V6, multiclass
        clus
vv       DEL PEAK 19(9Q34.2) MUTATED DEL PEAK 19(9Q34.2) WILD-TYPE
  CLUS_1                          12                            52
  CLUS_2                          12                            34
  CLUS_3                          50                            40
  CLUS_4                           7                            45
  CLUS_5                          39                            77
  CLUS_6                           3                            28
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(9Q34.2) MUTATED      141    137     17
  DEL PEAK 19(9Q34.2) WILD-TYPE    418    167    195
D48V7, multiclass
        clus
vv       DEL PEAK 19(9Q34.2) MUTATED DEL PEAK 19(9Q34.2) WILD-TYPE
  CLUS_1                         141                           418
  CLUS_2                         137                           167
  CLUS_3                          17                           195
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(9Q34.2) MUTATED       76     50      2     50    102     15
  DEL PEAK 19(9Q34.2) WILD-TYPE    213    113     88    240     81     45
D48V8, multiclass
        clus
vv       DEL PEAK 19(9Q34.2) MUTATED DEL PEAK 19(9Q34.2) WILD-TYPE
  CLUS_1                          76                           213
  CLUS_2                          50                           113
  CLUS_3                           2                            88
  CLUS_4                          50                           240
  CLUS_5                         102                            81
  CLUS_6                          15                            45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(9Q34.2) MUTATED      144     19     53     72
  DEL PEAK 19(9Q34.2) WILD-TYPE    161    193    216    203
D48V9, multiclass
        clus
vv       DEL PEAK 19(9Q34.2) MUTATED DEL PEAK 19(9Q34.2) WILD-TYPE
  CLUS_1                         144                           161
  CLUS_2                          19                           193
  CLUS_3                          53                           216
  CLUS_4                          72                           203
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(9Q34.2) MUTATED       90     58     20     24     18     78
  DEL PEAK 19(9Q34.2) WILD-TYPE    204     94    225    116     78     56
D48V10, multiclass
        clus
vv       DEL PEAK 19(9Q34.2) MUTATED DEL PEAK 19(9Q34.2) WILD-TYPE
  CLUS_1                          90                           204
  CLUS_2                          58                            94
  CLUS_3                          20                           225
  CLUS_4                          24                           116
  CLUS_5                          18                            78
  CLUS_6                          78                            56
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(9Q34.2) MUTATED       48     77     17     13     20
  DEL PEAK 19(9Q34.2) WILD-TYPE    132     62     82     98    113
D48V11, multiclass
        clus
vv       DEL PEAK 19(9Q34.2) MUTATED DEL PEAK 19(9Q34.2) WILD-TYPE
  CLUS_1                          48                           132
  CLUS_2                          77                            62
  CLUS_3                          17                            82
  CLUS_4                          13                            98
  CLUS_5                          20                           113
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(9Q34.2) MUTATED      118     43     14
  DEL PEAK 19(9Q34.2) WILD-TYPE    187    204     96
D48V12, multiclass
        clus
vv       DEL PEAK 19(9Q34.2) MUTATED DEL PEAK 19(9Q34.2) WILD-TYPE
  CLUS_1                         118                           187
  CLUS_2                          43                           204
  CLUS_3                          14                            96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(49) Variable = DEL PEAK 20(10Q23.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(10Q23.31) MUTATED        7      6     36     49     20     21
  DEL PEAK 20(10Q23.31) WILD-TYPE     14     30     83     47     89     51
                                 vv
clus                              CLUS_7 CLUS_8
  DEL PEAK 20(10Q23.31) MUTATED        7      3
  DEL PEAK 20(10Q23.31) WILD-TYPE     13     37
D49V1, multiclass
        clus
vv       DEL PEAK 20(10Q23.31) MUTATED DEL PEAK 20(10Q23.31) WILD-TYPE
  CLUS_1                             7                              14
  CLUS_2                             6                              30
  CLUS_3                            36                              83
  CLUS_4                            49                              47
  CLUS_5                            20                              89
  CLUS_6                            21                              51
  CLUS_7                             7                              13
  CLUS_8                             3                              37
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(10Q23.31) MUTATED       28     29     39     45      8
  DEL PEAK 20(10Q23.31) WILD-TYPE     73    123     75     43     50
D49V2, multiclass
        clus
vv       DEL PEAK 20(10Q23.31) MUTATED DEL PEAK 20(10Q23.31) WILD-TYPE
  CLUS_1                            28                              73
  CLUS_2                            29                             123
  CLUS_3                            39                              75
  CLUS_4                            45                              43
  CLUS_5                             8                              50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(10Q23.31) MUTATED       91     54     25    134     16
  DEL PEAK 20(10Q23.31) WILD-TYPE    184    353     73    123     27
D49V3, multiclass
        clus
vv       DEL PEAK 20(10Q23.31) MUTATED DEL PEAK 20(10Q23.31) WILD-TYPE
  CLUS_1                            91                             184
  CLUS_2                            54                             353
  CLUS_3                            25                              73
  CLUS_4                           134                             123
  CLUS_5                            16                              27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(10Q23.31) MUTATED       58     32     26     28     75     12
  DEL PEAK 20(10Q23.31) WILD-TYPE     95     81    151    103     53     43
D49V4, multiclass
        clus
vv       DEL PEAK 20(10Q23.31) MUTATED DEL PEAK 20(10Q23.31) WILD-TYPE
  CLUS_1                            58                              95
  CLUS_2                            32                              81
  CLUS_3                            26                             151
  CLUS_4                            28                             103
  CLUS_5                            75                              53
  CLUS_6                            12                              43
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(10Q23.31) MUTATED       68     30     20
  DEL PEAK 20(10Q23.31) WILD-TYPE     80    104     97
D49V5, multiclass
        clus
vv       DEL PEAK 20(10Q23.31) MUTATED DEL PEAK 20(10Q23.31) WILD-TYPE
  CLUS_1                            68                              80
  CLUS_2                            30                             104
  CLUS_3                            20                              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(10Q23.31) MUTATED       12      8     45      9     34     10
  DEL PEAK 20(10Q23.31) WILD-TYPE     52     38     45     43     82     21
D49V6, multiclass
        clus
vv       DEL PEAK 20(10Q23.31) MUTATED DEL PEAK 20(10Q23.31) WILD-TYPE
  CLUS_1                            12                              52
  CLUS_2                             8                              38
  CLUS_3                            45                              45
  CLUS_4                             9                              43
  CLUS_5                            34                              82
  CLUS_6                            10                              21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(10Q23.31) MUTATED      146    145     28
  DEL PEAK 20(10Q23.31) WILD-TYPE    413    159    184
D49V7, multiclass
        clus
vv       DEL PEAK 20(10Q23.31) MUTATED DEL PEAK 20(10Q23.31) WILD-TYPE
  CLUS_1                           146                             413
  CLUS_2                           145                             159
  CLUS_3                            28                             184
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(10Q23.31) MUTATED       71     65     10     55     96     22
  DEL PEAK 20(10Q23.31) WILD-TYPE    218     98     80    235     87     38
D49V8, multiclass
        clus
vv       DEL PEAK 20(10Q23.31) MUTATED DEL PEAK 20(10Q23.31) WILD-TYPE
  CLUS_1                            71                             218
  CLUS_2                            65                              98
  CLUS_3                            10                              80
  CLUS_4                            55                             235
  CLUS_5                            96                              87
  CLUS_6                            22                              38
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(10Q23.31) MUTATED      135     38     61     77
  DEL PEAK 20(10Q23.31) WILD-TYPE    170    174    208    198
D49V9, multiclass
        clus
vv       DEL PEAK 20(10Q23.31) MUTATED DEL PEAK 20(10Q23.31) WILD-TYPE
  CLUS_1                           135                             170
  CLUS_2                            38                             174
  CLUS_3                            61                             208
  CLUS_4                            77                             198
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(10Q23.31) MUTATED       92     64     41     21     20     73
  DEL PEAK 20(10Q23.31) WILD-TYPE    202     88    204    119     76     61
D49V10, multiclass
        clus
vv       DEL PEAK 20(10Q23.31) MUTATED DEL PEAK 20(10Q23.31) WILD-TYPE
  CLUS_1                            92                             202
  CLUS_2                            64                              88
  CLUS_3                            41                             204
  CLUS_4                            21                             119
  CLUS_5                            20                              76
  CLUS_6                            73                              61
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(10Q23.31) MUTATED       53     74     22     17     32
  DEL PEAK 20(10Q23.31) WILD-TYPE    127     65     77     94    101
D49V11, multiclass
        clus
vv       DEL PEAK 20(10Q23.31) MUTATED DEL PEAK 20(10Q23.31) WILD-TYPE
  CLUS_1                            53                             127
  CLUS_2                            74                              65
  CLUS_3                            22                              77
  CLUS_4                            17                              94
  CLUS_5                            32                             101
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(10Q23.31) MUTATED      116     61     21
  DEL PEAK 20(10Q23.31) WILD-TYPE    189    186     89
D49V12, multiclass
        clus
vv       DEL PEAK 20(10Q23.31) MUTATED DEL PEAK 20(10Q23.31) WILD-TYPE
  CLUS_1                           116                             189
  CLUS_2                            61                             186
  CLUS_3                            21                              89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(50) Variable = DEL PEAK 21(10Q26.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(10Q26.3) MUTATED        8      7     38     55     14     22
  DEL PEAK 21(10Q26.3) WILD-TYPE     13     29     81     41     95     50
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 21(10Q26.3) MUTATED        6      4
  DEL PEAK 21(10Q26.3) WILD-TYPE     14     36
D50V1, multiclass
        clus
vv       DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE
  CLUS_1                            8                             13
  CLUS_2                            7                             29
  CLUS_3                           38                             81
  CLUS_4                           55                             41
  CLUS_5                           14                             95
  CLUS_6                           22                             50
  CLUS_7                            6                             14
  CLUS_8                            4                             36
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(10Q26.3) MUTATED       31     23     44     49      7
  DEL PEAK 21(10Q26.3) WILD-TYPE     70    129     70     39     51
D50V2, multiclass
        clus
vv       DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE
  CLUS_1                           31                             70
  CLUS_2                           23                            129
  CLUS_3                           44                             70
  CLUS_4                           49                             39
  CLUS_5                            7                             51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(10Q26.3) MUTATED       98     50     22    138     11
  DEL PEAK 21(10Q26.3) WILD-TYPE    177    357     76    119     32
D50V3, multiclass
        clus
vv       DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE
  CLUS_1                           98                            177
  CLUS_2                           50                            357
  CLUS_3                           22                             76
  CLUS_4                          138                            119
  CLUS_5                           11                             32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(10Q26.3) MUTATED       52     39     22     25     75     11
  DEL PEAK 21(10Q26.3) WILD-TYPE    101     74    155    106     53     44
D50V4, multiclass
        clus
vv       DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE
  CLUS_1                           52                            101
  CLUS_2                           39                             74
  CLUS_3                           22                            155
  CLUS_4                           25                            106
  CLUS_5                           75                             53
  CLUS_6                           11                             44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(10Q26.3) MUTATED       73     28     24
  DEL PEAK 21(10Q26.3) WILD-TYPE     75    106     93
D50V5, multiclass
        clus
vv       DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE
  CLUS_1                           73                             75
  CLUS_2                           28                            106
  CLUS_3                           24                             93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(10Q26.3) MUTATED       11      6     48     10     36     14
  DEL PEAK 21(10Q26.3) WILD-TYPE     53     40     42     42     80     17
D50V6, multiclass
        clus
vv       DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE
  CLUS_1                           11                             53
  CLUS_2                            6                             40
  CLUS_3                           48                             42
  CLUS_4                           10                             42
  CLUS_5                           36                             80
  CLUS_6                           14                             17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(10Q26.3) MUTATED      145    153     21
  DEL PEAK 21(10Q26.3) WILD-TYPE    414    151    191
D50V7, multiclass
        clus
vv       DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE
  CLUS_1                          145                            414
  CLUS_2                          153                            151
  CLUS_3                           21                            191
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(10Q26.3) MUTATED       67     71      6     51     98     26
  DEL PEAK 21(10Q26.3) WILD-TYPE    222     92     84    239     85     34
D50V8, multiclass
        clus
vv       DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE
  CLUS_1                           67                            222
  CLUS_2                           71                             92
  CLUS_3                            6                             84
  CLUS_4                           51                            239
  CLUS_5                           98                             85
  CLUS_6                           26                             34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(10Q26.3) MUTATED      142     32     52     82
  DEL PEAK 21(10Q26.3) WILD-TYPE    163    180    217    193
D50V9, multiclass
        clus
vv       DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE
  CLUS_1                          142                            163
  CLUS_2                           32                            180
  CLUS_3                           52                            217
  CLUS_4                           82                            193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(10Q26.3) MUTATED      100     68     33     15     20     72
  DEL PEAK 21(10Q26.3) WILD-TYPE    194     84    212    125     76     62
D50V10, multiclass
        clus
vv       DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE
  CLUS_1                          100                            194
  CLUS_2                           68                             84
  CLUS_3                           33                            212
  CLUS_4                           15                            125
  CLUS_5                           20                             76
  CLUS_6                           72                             62
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(10Q26.3) MUTATED       60     72     20     13     33
  DEL PEAK 21(10Q26.3) WILD-TYPE    120     67     79     98    100
D50V11, multiclass
        clus
vv       DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE
  CLUS_1                           60                            120
  CLUS_2                           72                             67
  CLUS_3                           20                             79
  CLUS_4                           13                             98
  CLUS_5                           33                            100
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(10Q26.3) MUTATED      125     54     19
  DEL PEAK 21(10Q26.3) WILD-TYPE    180    193     91
D50V12, multiclass
        clus
vv       DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE
  CLUS_1                          125                            180
  CLUS_2                           54                            193
  CLUS_3                           19                             91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(51) Variable = DEL PEAK 22(11P15.5) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(11P15.5) MUTATED        3      8     33     48     14     34
  DEL PEAK 22(11P15.5) WILD-TYPE     18     28     86     48     95     38
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 22(11P15.5) MUTATED        7      9
  DEL PEAK 22(11P15.5) WILD-TYPE     13     31
D51V1, multiclass
        clus
vv       DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE
  CLUS_1                            3                             18
  CLUS_2                            8                             28
  CLUS_3                           33                             86
  CLUS_4                           48                             48
  CLUS_5                           14                             95
  CLUS_6                           34                             38
  CLUS_7                            7                             13
  CLUS_8                            9                             31
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(11P15.5) MUTATED       24     32     50     42      8
  DEL PEAK 22(11P15.5) WILD-TYPE     77    120     64     46     50
D51V2, multiclass
        clus
vv       DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE
  CLUS_1                           24                             77
  CLUS_2                           32                            120
  CLUS_3                           50                             64
  CLUS_4                           42                             46
  CLUS_5                            8                             50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(11P15.5) MUTATED       94     34     20    155      6
  DEL PEAK 22(11P15.5) WILD-TYPE    181    373     78    102     37
D51V3, multiclass
        clus
vv       DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE
  CLUS_1                           94                            181
  CLUS_2                           34                            373
  CLUS_3                           20                             78
  CLUS_4                          155                            102
  CLUS_5                            6                             37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(11P15.5) MUTATED       49     35     17     22     68     12
  DEL PEAK 22(11P15.5) WILD-TYPE    104     78    160    109     60     43
D51V4, multiclass
        clus
vv       DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE
  CLUS_1                           49                            104
  CLUS_2                           35                             78
  CLUS_3                           17                            160
  CLUS_4                           22                            109
  CLUS_5                           68                             60
  CLUS_6                           12                             43
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(11P15.5) MUTATED       77     27     26
  DEL PEAK 22(11P15.5) WILD-TYPE     71    107     91
D51V5, multiclass
        clus
vv       DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE
  CLUS_1                           77                             71
  CLUS_2                           27                            107
  CLUS_3                           26                             91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(11P15.5) MUTATED       11      9     48     11     36     15
  DEL PEAK 22(11P15.5) WILD-TYPE     53     37     42     41     80     16
D51V6, multiclass
        clus
vv       DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE
  CLUS_1                           11                             53
  CLUS_2                            9                             37
  CLUS_3                           48                             42
  CLUS_4                           11                             41
  CLUS_5                           36                             80
  CLUS_6                           15                             16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(11P15.5) MUTATED      129    153     26
  DEL PEAK 22(11P15.5) WILD-TYPE    430    151    186
D51V7, multiclass
        clus
vv       DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE
  CLUS_1                          129                            430
  CLUS_2                          153                            151
  CLUS_3                           26                            186
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(11P15.5) MUTATED       60     62      9     57     91     29
  DEL PEAK 22(11P15.5) WILD-TYPE    229    101     81    233     92     31
D51V8, multiclass
        clus
vv       DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE
  CLUS_1                           60                            229
  CLUS_2                           62                            101
  CLUS_3                            9                             81
  CLUS_4                           57                            233
  CLUS_5                           91                             92
  CLUS_6                           29                             31
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(11P15.5) MUTATED      147     26     61     67
  DEL PEAK 22(11P15.5) WILD-TYPE    158    186    208    208
D51V9, multiclass
        clus
vv       DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE
  CLUS_1                          147                            158
  CLUS_2                           26                            186
  CLUS_3                           61                            208
  CLUS_4                           67                            208
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(11P15.5) MUTATED       91     68     38     24     11     69
  DEL PEAK 22(11P15.5) WILD-TYPE    203     84    207    116     85     65
D51V10, multiclass
        clus
vv       DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE
  CLUS_1                           91                            203
  CLUS_2                           68                             84
  CLUS_3                           38                            207
  CLUS_4                           24                            116
  CLUS_5                           11                             85
  CLUS_6                           69                             65
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(11P15.5) MUTATED       47     69     20     15     30
  DEL PEAK 22(11P15.5) WILD-TYPE    133     70     79     96    103
D51V11, multiclass
        clus
vv       DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE
  CLUS_1                           47                            133
  CLUS_2                           69                             70
  CLUS_3                           20                             79
  CLUS_4                           15                             96
  CLUS_5                           30                            103
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(11P15.5) MUTATED      110     51     20
  DEL PEAK 22(11P15.5) WILD-TYPE    195    196     90
D51V12, multiclass
        clus
vv       DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE
  CLUS_1                          110                            195
  CLUS_2                           51                            196
  CLUS_3                           20                             90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(52) Variable = DEL PEAK 23(11Q13.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(11Q13.1) MUTATED        3      7     45     21     16     19
  DEL PEAK 23(11Q13.1) WILD-TYPE     18     29     74     75     93     53
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 23(11Q13.1) MUTATED        2      9
  DEL PEAK 23(11Q13.1) WILD-TYPE     18     31
D52V1, multiclass
        clus
vv       DEL PEAK 23(11Q13.1) MUTATED DEL PEAK 23(11Q13.1) WILD-TYPE
  CLUS_1                            3                             18
  CLUS_2                            7                             29
  CLUS_3                           45                             74
  CLUS_4                           21                             75
  CLUS_5                           16                             93
  CLUS_6                           19                             53
  CLUS_7                            2                             18
  CLUS_8                            9                             31
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(11Q13.1) MUTATED       39     29     26     20      8
  DEL PEAK 23(11Q13.1) WILD-TYPE     62    123     88     68     50
D52V2, multiclass
        clus
vv       DEL PEAK 23(11Q13.1) MUTATED DEL PEAK 23(11Q13.1) WILD-TYPE
  CLUS_1                           39                             62
  CLUS_2                           29                            123
  CLUS_3                           26                             88
  CLUS_4                           20                             68
  CLUS_5                            8                             50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(11Q13.1) MUTATED      110     37     28     57      9
  DEL PEAK 23(11Q13.1) WILD-TYPE    165    370     70    200     34
D52V3, multiclass
        clus
vv       DEL PEAK 23(11Q13.1) MUTATED DEL PEAK 23(11Q13.1) WILD-TYPE
  CLUS_1                          110                            165
  CLUS_2                           37                            370
  CLUS_3                           28                             70
  CLUS_4                           57                            200
  CLUS_5                            9                             34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(11Q13.1) MUTATED       53     36     23     15     30      9
  DEL PEAK 23(11Q13.1) WILD-TYPE    100     77    154    116     98     46
D52V4, multiclass
        clus
vv       DEL PEAK 23(11Q13.1) MUTATED DEL PEAK 23(11Q13.1) WILD-TYPE
  CLUS_1                           53                            100
  CLUS_2                           36                             77
  CLUS_3                           23                            154
  CLUS_4                           15                            116
  CLUS_5                           30                             98
  CLUS_6                            9                             46
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(11Q13.1) MUTATED       36     35     22
  DEL PEAK 23(11Q13.1) WILD-TYPE    112     99     95
D52V5, multiclass
        clus
vv       DEL PEAK 23(11Q13.1) MUTATED DEL PEAK 23(11Q13.1) WILD-TYPE
  CLUS_1                           36                            112
  CLUS_2                           35                             99
  CLUS_3                           22                             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(11Q13.1) MUTATED        9      8     20      9     39      8
  DEL PEAK 23(11Q13.1) WILD-TYPE     55     38     70     43     77     23
D52V6, multiclass
        clus
vv       DEL PEAK 23(11Q13.1) MUTATED DEL PEAK 23(11Q13.1) WILD-TYPE
  CLUS_1                            9                             55
  CLUS_2                            8                             38
  CLUS_3                           20                             70
  CLUS_4                            9                             43
  CLUS_5                           39                             77
  CLUS_6                            8                             23
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(11Q13.1) MUTATED      146     65     28
  DEL PEAK 23(11Q13.1) WILD-TYPE    413    239    184
D52V7, multiclass
        clus
vv       DEL PEAK 23(11Q13.1) MUTATED DEL PEAK 23(11Q13.1) WILD-TYPE
  CLUS_1                          146                            413
  CLUS_2                           65                            239
  CLUS_3                           28                            184
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(11Q13.1) MUTATED       88     39      8     55     39     10
  DEL PEAK 23(11Q13.1) WILD-TYPE    201    124     82    235    144     50
D52V8, multiclass
        clus
vv       DEL PEAK 23(11Q13.1) MUTATED DEL PEAK 23(11Q13.1) WILD-TYPE
  CLUS_1                           88                            201
  CLUS_2                           39                            124
  CLUS_3                            8                             82
  CLUS_4                           55                            235
  CLUS_5                           39                            144
  CLUS_6                           10                             50
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(11Q13.1) MUTATED       76     38     57     67
  DEL PEAK 23(11Q13.1) WILD-TYPE    229    174    212    208
D52V9, multiclass
        clus
vv       DEL PEAK 23(11Q13.1) MUTATED DEL PEAK 23(11Q13.1) WILD-TYPE
  CLUS_1                           76                            229
  CLUS_2                           38                            174
  CLUS_3                           57                            212
  CLUS_4                           67                            208
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(11Q13.1) MUTATED       79     35     38     33     22     31
  DEL PEAK 23(11Q13.1) WILD-TYPE    215    117    207    107     74    103
D52V10, multiclass
        clus
vv       DEL PEAK 23(11Q13.1) MUTATED DEL PEAK 23(11Q13.1) WILD-TYPE
  CLUS_1                           79                            215
  CLUS_2                           35                            117
  CLUS_3                           38                            207
  CLUS_4                           33                            107
  CLUS_5                           22                             74
  CLUS_6                           31                            103
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(11Q13.1) MUTATED       55     33     15     19     31
  DEL PEAK 23(11Q13.1) WILD-TYPE    125    106     84     92    102
D52V11, multiclass
        clus
vv       DEL PEAK 23(11Q13.1) MUTATED DEL PEAK 23(11Q13.1) WILD-TYPE
  CLUS_1                           55                            125
  CLUS_2                           33                            106
  CLUS_3                           15                             84
  CLUS_4                           19                             92
  CLUS_5                           31                            102
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(11Q13.1) MUTATED       78     50     25
  DEL PEAK 23(11Q13.1) WILD-TYPE    227    197     85
D52V12, multiclass
        clus
vv       DEL PEAK 23(11Q13.1) MUTATED DEL PEAK 23(11Q13.1) WILD-TYPE
  CLUS_1                           78                            227
  CLUS_2                           50                            197
  CLUS_3                           25                             85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(53) Variable = DEL PEAK 24(11Q23.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 24(11Q23.3) MUTATED       12     21     89     40     36     37
  DEL PEAK 24(11Q23.3) WILD-TYPE      9     15     30     56     73     35
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 24(11Q23.3) MUTATED       12     22
  DEL PEAK 24(11Q23.3) WILD-TYPE      8     18
D53V1, multiclass
        clus
vv       DEL PEAK 24(11Q23.3) MUTATED DEL PEAK 24(11Q23.3) WILD-TYPE
  CLUS_1                           12                              9
  CLUS_2                           21                             15
  CLUS_3                           89                             30
  CLUS_4                           40                             56
  CLUS_5                           36                             73
  CLUS_6                           37                             35
  CLUS_7                           12                              8
  CLUS_8                           22                             18
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(11Q23.3) MUTATED       77     74     64     37     17
  DEL PEAK 24(11Q23.3) WILD-TYPE     24     78     50     51     41
D53V2, multiclass
        clus
vv       DEL PEAK 24(11Q23.3) MUTATED DEL PEAK 24(11Q23.3) WILD-TYPE
  CLUS_1                           77                             24
  CLUS_2                           74                             78
  CLUS_3                           64                             50
  CLUS_4                           37                             51
  CLUS_5                           17                             41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(11Q23.3) MUTATED      234    116     48    132     17
  DEL PEAK 24(11Q23.3) WILD-TYPE     41    291     50    125     26
D53V3, multiclass
        clus
vv       DEL PEAK 24(11Q23.3) MUTATED DEL PEAK 24(11Q23.3) WILD-TYPE
  CLUS_1                          234                             41
  CLUS_2                          116                            291
  CLUS_3                           48                             50
  CLUS_4                          132                            125
  CLUS_5                           17                             26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 24(11Q23.3) MUTATED      110     75     64     43     64     26
  DEL PEAK 24(11Q23.3) WILD-TYPE     43     38    113     88     64     29
D53V4, multiclass
        clus
vv       DEL PEAK 24(11Q23.3) MUTATED DEL PEAK 24(11Q23.3) WILD-TYPE
  CLUS_1                          110                             43
  CLUS_2                           75                             38
  CLUS_3                           64                            113
  CLUS_4                           43                             88
  CLUS_5                           64                             64
  CLUS_6                           26                             29
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(11Q23.3) MUTATED       78     71     59
  DEL PEAK 24(11Q23.3) WILD-TYPE     70     63     58
D53V5, multiclass
        clus
vv       DEL PEAK 24(11Q23.3) MUTATED DEL PEAK 24(11Q23.3) WILD-TYPE
  CLUS_1                           78                             70
  CLUS_2                           71                             63
  CLUS_3                           59                             58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 24(11Q23.3) MUTATED       20     23     41     24     83     17
  DEL PEAK 24(11Q23.3) WILD-TYPE     44     23     49     28     33     14
D53V6, multiclass
        clus
vv       DEL PEAK 24(11Q23.3) MUTATED DEL PEAK 24(11Q23.3) WILD-TYPE
  CLUS_1                           20                             44
  CLUS_2                           23                             23
  CLUS_3                           41                             49
  CLUS_4                           24                             28
  CLUS_5                           83                             33
  CLUS_6                           17                             14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(11Q23.3) MUTATED      318    144     82
  DEL PEAK 24(11Q23.3) WILD-TYPE    241    160    130
D53V7, multiclass
        clus
vv       DEL PEAK 24(11Q23.3) MUTATED DEL PEAK 24(11Q23.3) WILD-TYPE
  CLUS_1                          318                            241
  CLUS_2                          144                            160
  CLUS_3                           82                            130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 24(11Q23.3) MUTATED      167    100     26    149     78     24
  DEL PEAK 24(11Q23.3) WILD-TYPE    122     63     64    141    105     36
D53V8, multiclass
        clus
vv       DEL PEAK 24(11Q23.3) MUTATED DEL PEAK 24(11Q23.3) WILD-TYPE
  CLUS_1                          167                            122
  CLUS_2                          100                             63
  CLUS_3                           26                             64
  CLUS_4                          149                            141
  CLUS_5                           78                            105
  CLUS_6                           24                             36
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(11Q23.3) MUTATED      155     87    136    154
  DEL PEAK 24(11Q23.3) WILD-TYPE    150    125    133    121
D53V9, multiclass
        clus
vv       DEL PEAK 24(11Q23.3) MUTATED DEL PEAK 24(11Q23.3) WILD-TYPE
  CLUS_1                          155                            150
  CLUS_2                           87                            125
  CLUS_3                          136                            133
  CLUS_4                          154                            121
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 24(11Q23.3) MUTATED      183     75    103     63     48     60
  DEL PEAK 24(11Q23.3) WILD-TYPE    111     77    142     77     48     74
D53V10, multiclass
        clus
vv       DEL PEAK 24(11Q23.3) MUTATED DEL PEAK 24(11Q23.3) WILD-TYPE
  CLUS_1                          183                            111
  CLUS_2                           75                             77
  CLUS_3                          103                            142
  CLUS_4                           63                             77
  CLUS_5                           48                             48
  CLUS_6                           60                             74
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(11Q23.3) MUTATED      106     63     57     37     64
  DEL PEAK 24(11Q23.3) WILD-TYPE     74     76     42     74     69
D53V11, multiclass
        clus
vv       DEL PEAK 24(11Q23.3) MUTATED DEL PEAK 24(11Q23.3) WILD-TYPE
  CLUS_1                          106                             74
  CLUS_2                           63                             76
  CLUS_3                           57                             42
  CLUS_4                           37                             74
  CLUS_5                           64                             69
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(11Q23.3) MUTATED      161    119     47
  DEL PEAK 24(11Q23.3) WILD-TYPE    144    128     63
D53V12, multiclass
        clus
vv       DEL PEAK 24(11Q23.3) MUTATED DEL PEAK 24(11Q23.3) WILD-TYPE
  CLUS_1                          161                            144
  CLUS_2                          119                            128
  CLUS_3                           47                             63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(54) Variable = DEL PEAK 25(11Q25) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 25(11Q25) MUTATED       10     20     76     47     34     38     12
  DEL PEAK 25(11Q25) WILD-TYPE     11     16     43     49     75     34      8
                              vv
clus                           CLUS_8
  DEL PEAK 25(11Q25) MUTATED       20
  DEL PEAK 25(11Q25) WILD-TYPE     20
D54V1, multiclass
        clus
vv       DEL PEAK 25(11Q25) MUTATED DEL PEAK 25(11Q25) WILD-TYPE
  CLUS_1                         10                           11
  CLUS_2                         20                           16
  CLUS_3                         76                           43
  CLUS_4                         47                           49
  CLUS_5                         34                           75
  CLUS_6                         38                           34
  CLUS_7                         12                            8
  CLUS_8                         20                           20
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(11Q25) MUTATED       65     69     62     45     16
  DEL PEAK 25(11Q25) WILD-TYPE     36     83     52     43     42
D54V2, multiclass
        clus
vv       DEL PEAK 25(11Q25) MUTATED DEL PEAK 25(11Q25) WILD-TYPE
  CLUS_1                         65                           36
  CLUS_2                         69                           83
  CLUS_3                         62                           52
  CLUS_4                         45                           43
  CLUS_5                         16                           42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(11Q25) MUTATED      216    101     41    140     15
  DEL PEAK 25(11Q25) WILD-TYPE     59    306     57    117     28
D54V3, multiclass
        clus
vv       DEL PEAK 25(11Q25) MUTATED DEL PEAK 25(11Q25) WILD-TYPE
  CLUS_1                        216                           59
  CLUS_2                        101                          306
  CLUS_3                         41                           57
  CLUS_4                        140                          117
  CLUS_5                         15                           28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 25(11Q25) MUTATED       97     68     56     42     67     22
  DEL PEAK 25(11Q25) WILD-TYPE     56     45    121     89     61     33
D54V4, multiclass
        clus
vv       DEL PEAK 25(11Q25) MUTATED DEL PEAK 25(11Q25) WILD-TYPE
  CLUS_1                         97                           56
  CLUS_2                         68                           45
  CLUS_3                         56                          121
  CLUS_4                         42                           89
  CLUS_5                         67                           61
  CLUS_6                         22                           33
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(11Q25) MUTATED       83     65     51
  DEL PEAK 25(11Q25) WILD-TYPE     65     69     66
D54V5, multiclass
        clus
vv       DEL PEAK 25(11Q25) MUTATED DEL PEAK 25(11Q25) WILD-TYPE
  CLUS_1                         83                           65
  CLUS_2                         65                           69
  CLUS_3                         51                           66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 25(11Q25) MUTATED       16     19     46     24     77     17
  DEL PEAK 25(11Q25) WILD-TYPE     48     27     44     28     39     14
D54V6, multiclass
        clus
vv       DEL PEAK 25(11Q25) MUTATED DEL PEAK 25(11Q25) WILD-TYPE
  CLUS_1                         16                           48
  CLUS_2                         19                           27
  CLUS_3                         46                           44
  CLUS_4                         24                           28
  CLUS_5                         77                           39
  CLUS_6                         17                           14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(11Q25) MUTATED      280    153     77
  DEL PEAK 25(11Q25) WILD-TYPE    279    151    135
D54V7, multiclass
        clus
vv       DEL PEAK 25(11Q25) MUTATED DEL PEAK 25(11Q25) WILD-TYPE
  CLUS_1                        280                          279
  CLUS_2                        153                          151
  CLUS_3                         77                          135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 25(11Q25) MUTATED      144     91     23    137     93     22
  DEL PEAK 25(11Q25) WILD-TYPE    145     72     67    153     90     38
D54V8, multiclass
        clus
vv       DEL PEAK 25(11Q25) MUTATED DEL PEAK 25(11Q25) WILD-TYPE
  CLUS_1                        144                          145
  CLUS_2                         91                           72
  CLUS_3                         23                           67
  CLUS_4                        137                          153
  CLUS_5                         93                           90
  CLUS_6                         22                           38
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(11Q25) MUTATED      162     79    124    136
  DEL PEAK 25(11Q25) WILD-TYPE    143    133    145    139
D54V9, multiclass
        clus
vv       DEL PEAK 25(11Q25) MUTATED DEL PEAK 25(11Q25) WILD-TYPE
  CLUS_1                        162                          143
  CLUS_2                         79                          133
  CLUS_3                        124                          145
  CLUS_4                        136                          139
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 25(11Q25) MUTATED      160     74     95     57     41     74
  DEL PEAK 25(11Q25) WILD-TYPE    134     78    150     83     55     60
D54V10, multiclass
        clus
vv       DEL PEAK 25(11Q25) MUTATED DEL PEAK 25(11Q25) WILD-TYPE
  CLUS_1                        160                          134
  CLUS_2                         74                           78
  CLUS_3                         95                          150
  CLUS_4                         57                           83
  CLUS_5                         41                           55
  CLUS_6                         74                           60
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(11Q25) MUTATED       91     71     47     36     61
  DEL PEAK 25(11Q25) WILD-TYPE     89     68     52     75     72
D54V11, multiclass
        clus
vv       DEL PEAK 25(11Q25) MUTATED DEL PEAK 25(11Q25) WILD-TYPE
  CLUS_1                         91                           89
  CLUS_2                         71                           68
  CLUS_3                         47                           52
  CLUS_4                         36                           75
  CLUS_5                         61                           72
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(11Q25) MUTATED      156    108     42
  DEL PEAK 25(11Q25) WILD-TYPE    149    139     68
D54V12, multiclass
        clus
vv       DEL PEAK 25(11Q25) MUTATED DEL PEAK 25(11Q25) WILD-TYPE
  CLUS_1                        156                          149
  CLUS_2                        108                          139
  CLUS_3                         42                           68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(55) Variable = DEL PEAK 26(12P13.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(12P13.1) MUTATED        5      8     26     24      9     13
  DEL PEAK 26(12P13.1) WILD-TYPE     16     28     93     72    100     59
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 26(12P13.1) MUTATED        5      5
  DEL PEAK 26(12P13.1) WILD-TYPE     15     35
D55V1, multiclass
        clus
vv       DEL PEAK 26(12P13.1) MUTATED DEL PEAK 26(12P13.1) WILD-TYPE
  CLUS_1                            5                             16
  CLUS_2                            8                             28
  CLUS_3                           26                             93
  CLUS_4                           24                             72
  CLUS_5                            9                            100
  CLUS_6                           13                             59
  CLUS_7                            5                             15
  CLUS_8                            5                             35
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(12P13.1) MUTATED       19     21     27     21      7
  DEL PEAK 26(12P13.1) WILD-TYPE     82    131     87     67     51
D55V2, multiclass
        clus
vv       DEL PEAK 26(12P13.1) MUTATED DEL PEAK 26(12P13.1) WILD-TYPE
  CLUS_1                           19                             82
  CLUS_2                           21                            131
  CLUS_3                           27                             87
  CLUS_4                           21                             67
  CLUS_5                            7                             51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(12P13.1) MUTATED       58     49     14     62      5
  DEL PEAK 26(12P13.1) WILD-TYPE    217    358     84    195     38
D55V3, multiclass
        clus
vv       DEL PEAK 26(12P13.1) MUTATED DEL PEAK 26(12P13.1) WILD-TYPE
  CLUS_1                           58                            217
  CLUS_2                           49                            358
  CLUS_3                           14                             84
  CLUS_4                           62                            195
  CLUS_5                            5                             38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(12P13.1) MUTATED       31     15     21     15     33     13
  DEL PEAK 26(12P13.1) WILD-TYPE    122     98    156    116     95     42
D55V4, multiclass
        clus
vv       DEL PEAK 26(12P13.1) MUTATED DEL PEAK 26(12P13.1) WILD-TYPE
  CLUS_1                           31                            122
  CLUS_2                           15                             98
  CLUS_3                           21                            156
  CLUS_4                           15                            116
  CLUS_5                           33                             95
  CLUS_6                           13                             42
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(12P13.1) MUTATED       34     23     18
  DEL PEAK 26(12P13.1) WILD-TYPE    114    111     99
D55V5, multiclass
        clus
vv       DEL PEAK 26(12P13.1) MUTATED DEL PEAK 26(12P13.1) WILD-TYPE
  CLUS_1                           34                            114
  CLUS_2                           23                            111
  CLUS_3                           18                             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(12P13.1) MUTATED       12      6     23      9     18      7
  DEL PEAK 26(12P13.1) WILD-TYPE     52     40     67     43     98     24
D55V6, multiclass
        clus
vv       DEL PEAK 26(12P13.1) MUTATED DEL PEAK 26(12P13.1) WILD-TYPE
  CLUS_1                           12                             52
  CLUS_2                            6                             40
  CLUS_3                           23                             67
  CLUS_4                            9                             43
  CLUS_5                           18                             98
  CLUS_6                            7                             24
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(12P13.1) MUTATED       86     75     26
  DEL PEAK 26(12P13.1) WILD-TYPE    473    229    186
D55V7, multiclass
        clus
vv       DEL PEAK 26(12P13.1) MUTATED DEL PEAK 26(12P13.1) WILD-TYPE
  CLUS_1                           86                            473
  CLUS_2                           75                            229
  CLUS_3                           26                            186
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(12P13.1) MUTATED       43     36      7     41     42     18
  DEL PEAK 26(12P13.1) WILD-TYPE    246    127     83    249    141     42
D55V8, multiclass
        clus
vv       DEL PEAK 26(12P13.1) MUTATED DEL PEAK 26(12P13.1) WILD-TYPE
  CLUS_1                           43                            246
  CLUS_2                           36                            127
  CLUS_3                            7                             83
  CLUS_4                           41                            249
  CLUS_5                           42                            141
  CLUS_6                           18                             42
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(12P13.1) MUTATED       69     28     33     55
  DEL PEAK 26(12P13.1) WILD-TYPE    236    184    236    220
D55V9, multiclass
        clus
vv       DEL PEAK 26(12P13.1) MUTATED DEL PEAK 26(12P13.1) WILD-TYPE
  CLUS_1                           69                            236
  CLUS_2                           28                            184
  CLUS_3                           33                            236
  CLUS_4                           55                            220
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(12P13.1) MUTATED       56     45     25     20     11     28
  DEL PEAK 26(12P13.1) WILD-TYPE    238    107    220    120     85    106
D55V10, multiclass
        clus
vv       DEL PEAK 26(12P13.1) MUTATED DEL PEAK 26(12P13.1) WILD-TYPE
  CLUS_1                           56                            238
  CLUS_2                           45                            107
  CLUS_3                           25                            220
  CLUS_4                           20                            120
  CLUS_5                           11                             85
  CLUS_6                           28                            106
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(12P13.1) MUTATED       31     38     11     13     20
  DEL PEAK 26(12P13.1) WILD-TYPE    149    101     88     98    113
D55V11, multiclass
        clus
vv       DEL PEAK 26(12P13.1) MUTATED DEL PEAK 26(12P13.1) WILD-TYPE
  CLUS_1                           31                            149
  CLUS_2                           38                            101
  CLUS_3                           11                             88
  CLUS_4                           13                             98
  CLUS_5                           20                            113
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(12P13.1) MUTATED       68     28     17
  DEL PEAK 26(12P13.1) WILD-TYPE    237    219     93
D55V12, multiclass
        clus
vv       DEL PEAK 26(12P13.1) MUTATED DEL PEAK 26(12P13.1) WILD-TYPE
  CLUS_1                           68                            237
  CLUS_2                           28                            219
  CLUS_3                           17                             93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(56) Variable = DEL PEAK 27(12Q23.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(12Q23.1) MUTATED        2      1     14     43      6     22
  DEL PEAK 27(12Q23.1) WILD-TYPE     19     35    105     53    103     50
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 27(12Q23.1) MUTATED        4      4
  DEL PEAK 27(12Q23.1) WILD-TYPE     16     36
D56V1, multiclass
        clus
vv       DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE
  CLUS_1                            2                             19
  CLUS_2                            1                             35
  CLUS_3                           14                            105
  CLUS_4                           43                             53
  CLUS_5                            6                            103
  CLUS_6                           22                             50
  CLUS_7                            4                             16
  CLUS_8                            4                             36
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(12Q23.1) MUTATED       12     10     34     37      3
  DEL PEAK 27(12Q23.1) WILD-TYPE     89    142     80     51     55
D56V2, multiclass
        clus
vv       DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE
  CLUS_1                           12                             89
  CLUS_2                           10                            142
  CLUS_3                           34                             80
  CLUS_4                           37                             51
  CLUS_5                            3                             55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(12Q23.1) MUTATED       37     32     17    112      3
  DEL PEAK 27(12Q23.1) WILD-TYPE    238    375     81    145     40
D56V3, multiclass
        clus
vv       DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE
  CLUS_1                           37                            238
  CLUS_2                           32                            375
  CLUS_3                           17                             81
  CLUS_4                          112                            145
  CLUS_5                            3                             40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(12Q23.1) MUTATED       22     22     11     14     65      7
  DEL PEAK 27(12Q23.1) WILD-TYPE    131     91    166    117     63     48
D56V4, multiclass
        clus
vv       DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE
  CLUS_1                           22                            131
  CLUS_2                           22                             91
  CLUS_3                           11                            166
  CLUS_4                           14                            117
  CLUS_5                           65                             63
  CLUS_6                            7                             48
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(12Q23.1) MUTATED       49     11     18
  DEL PEAK 27(12Q23.1) WILD-TYPE     99    123     99
D56V5, multiclass
        clus
vv       DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE
  CLUS_1                           49                             99
  CLUS_2                           11                            123
  CLUS_3                           18                             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(12Q23.1) MUTATED        5      5     40      6     15      7
  DEL PEAK 27(12Q23.1) WILD-TYPE     59     41     50     46    101     24
D56V6, multiclass
        clus
vv       DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE
  CLUS_1                            5                             59
  CLUS_2                            5                             41
  CLUS_3                           40                             50
  CLUS_4                            6                             46
  CLUS_5                           15                            101
  CLUS_6                            7                             24
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(12Q23.1) MUTATED       63    116     20
  DEL PEAK 27(12Q23.1) WILD-TYPE    496    188    192
D56V7, multiclass
        clus
vv       DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE
  CLUS_1                           63                            496
  CLUS_2                          116                            188
  CLUS_3                           20                            192
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(12Q23.1) MUTATED       28     41      6     25     80     19
  DEL PEAK 27(12Q23.1) WILD-TYPE    261    122     84    265    103     41
D56V8, multiclass
        clus
vv       DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE
  CLUS_1                           28                            261
  CLUS_2                           41                            122
  CLUS_3                            6                             84
  CLUS_4                           25                            265
  CLUS_5                           80                            103
  CLUS_6                           19                             41
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(12Q23.1) MUTATED      109     22     20     46
  DEL PEAK 27(12Q23.1) WILD-TYPE    196    190    249    229
D56V9, multiclass
        clus
vv       DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE
  CLUS_1                          109                            196
  CLUS_2                           22                            190
  CLUS_3                           20                            249
  CLUS_4                           46                            229
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(12Q23.1) MUTATED       54     43     23     13      5     59
  DEL PEAK 27(12Q23.1) WILD-TYPE    240    109    222    127     91     75
D56V10, multiclass
        clus
vv       DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE
  CLUS_1                           54                            240
  CLUS_2                           43                            109
  CLUS_3                           23                            222
  CLUS_4                           13                            127
  CLUS_5                            5                             91
  CLUS_6                           59                             75
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(12Q23.1) MUTATED       27     62      7     14     21
  DEL PEAK 27(12Q23.1) WILD-TYPE    153     77     92     97    112
D56V11, multiclass
        clus
vv       DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE
  CLUS_1                           27                            153
  CLUS_2                           62                             77
  CLUS_3                            7                             92
  CLUS_4                           14                             97
  CLUS_5                           21                            112
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(12Q23.1) MUTATED       90     30     11
  DEL PEAK 27(12Q23.1) WILD-TYPE    215    217     99
D56V12, multiclass
        clus
vv       DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE
  CLUS_1                           90                            215
  CLUS_2                           30                            217
  CLUS_3                           11                             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(57) Variable = DEL PEAK 28(12Q24.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(12Q24.31) MUTATED        4      6     12     42      6     20
  DEL PEAK 28(12Q24.31) WILD-TYPE     17     30    107     54    103     52
                                 vv
clus                              CLUS_7 CLUS_8
  DEL PEAK 28(12Q24.31) MUTATED        5      6
  DEL PEAK 28(12Q24.31) WILD-TYPE     15     34
D57V1, multiclass
        clus
vv       DEL PEAK 28(12Q24.31) MUTATED DEL PEAK 28(12Q24.31) WILD-TYPE
  CLUS_1                             4                              17
  CLUS_2                             6                              30
  CLUS_3                            12                             107
  CLUS_4                            42                              54
  CLUS_5                             6                             103
  CLUS_6                            20                              52
  CLUS_7                             5                              15
  CLUS_8                             6                              34
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(12Q24.31) MUTATED       10     15     35     37      4
  DEL PEAK 28(12Q24.31) WILD-TYPE     91    137     79     51     54
D57V2, multiclass
        clus
vv       DEL PEAK 28(12Q24.31) MUTATED DEL PEAK 28(12Q24.31) WILD-TYPE
  CLUS_1                            10                              91
  CLUS_2                            15                             137
  CLUS_3                            35                              79
  CLUS_4                            37                              51
  CLUS_5                             4                              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(12Q24.31) MUTATED       38     40     17    112      4
  DEL PEAK 28(12Q24.31) WILD-TYPE    237    367     81    145     39
D57V3, multiclass
        clus
vv       DEL PEAK 28(12Q24.31) MUTATED DEL PEAK 28(12Q24.31) WILD-TYPE
  CLUS_1                            38                             237
  CLUS_2                            40                             367
  CLUS_3                            17                              81
  CLUS_4                           112                             145
  CLUS_5                             4                              39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(12Q24.31) MUTATED       18     23     16     17     66      8
  DEL PEAK 28(12Q24.31) WILD-TYPE    135     90    161    114     62     47
D57V4, multiclass
        clus
vv       DEL PEAK 28(12Q24.31) MUTATED DEL PEAK 28(12Q24.31) WILD-TYPE
  CLUS_1                            18                             135
  CLUS_2                            23                              90
  CLUS_3                            16                             161
  CLUS_4                            17                             114
  CLUS_5                            66                              62
  CLUS_6                             8                              47
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(12Q24.31) MUTATED       49     13     20
  DEL PEAK 28(12Q24.31) WILD-TYPE     99    121     97
D57V5, multiclass
        clus
vv       DEL PEAK 28(12Q24.31) MUTATED DEL PEAK 28(12Q24.31) WILD-TYPE
  CLUS_1                            49                              99
  CLUS_2                            13                             121
  CLUS_3                            20                              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(12Q24.31) MUTATED        7      6     36      7     16     10
  DEL PEAK 28(12Q24.31) WILD-TYPE     57     40     54     45    100     21
D57V6, multiclass
        clus
vv       DEL PEAK 28(12Q24.31) MUTATED DEL PEAK 28(12Q24.31) WILD-TYPE
  CLUS_1                             7                              57
  CLUS_2                             6                              40
  CLUS_3                            36                              54
  CLUS_4                             7                              45
  CLUS_5                            16                             100
  CLUS_6                            10                              21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(12Q24.31) MUTATED       64    118     28
  DEL PEAK 28(12Q24.31) WILD-TYPE    495    186    184
D57V7, multiclass
        clus
vv       DEL PEAK 28(12Q24.31) MUTATED DEL PEAK 28(12Q24.31) WILD-TYPE
  CLUS_1                            64                             495
  CLUS_2                           118                             186
  CLUS_3                            28                             184
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(12Q24.31) MUTATED       26     37     15     31     79     22
  DEL PEAK 28(12Q24.31) WILD-TYPE    263    126     75    259    104     38
D57V8, multiclass
        clus
vv       DEL PEAK 28(12Q24.31) MUTATED DEL PEAK 28(12Q24.31) WILD-TYPE
  CLUS_1                            26                             263
  CLUS_2                            37                             126
  CLUS_3                            15                              75
  CLUS_4                            31                             259
  CLUS_5                            79                             104
  CLUS_6                            22                              38
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(12Q24.31) MUTATED      104     28     27     49
  DEL PEAK 28(12Q24.31) WILD-TYPE    201    184    242    226
D57V9, multiclass
        clus
vv       DEL PEAK 28(12Q24.31) MUTATED DEL PEAK 28(12Q24.31) WILD-TYPE
  CLUS_1                           104                             201
  CLUS_2                            28                             184
  CLUS_3                            27                             242
  CLUS_4                            49                             226
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(12Q24.31) MUTATED       55     46     31     15      3     58
  DEL PEAK 28(12Q24.31) WILD-TYPE    239    106    214    125     93     76
D57V10, multiclass
        clus
vv       DEL PEAK 28(12Q24.31) MUTATED DEL PEAK 28(12Q24.31) WILD-TYPE
  CLUS_1                            55                             239
  CLUS_2                            46                             106
  CLUS_3                            31                             214
  CLUS_4                            15                             125
  CLUS_5                             3                              93
  CLUS_6                            58                              76
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(12Q24.31) MUTATED       29     60     12     16     23
  DEL PEAK 28(12Q24.31) WILD-TYPE    151     79     87     95    110
D57V11, multiclass
        clus
vv       DEL PEAK 28(12Q24.31) MUTATED DEL PEAK 28(12Q24.31) WILD-TYPE
  CLUS_1                            29                             151
  CLUS_2                            60                              79
  CLUS_3                            12                              87
  CLUS_4                            16                              95
  CLUS_5                            23                             110
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(12Q24.31) MUTATED       88     37     15
  DEL PEAK 28(12Q24.31) WILD-TYPE    217    210     95
D57V12, multiclass
        clus
vv       DEL PEAK 28(12Q24.31) MUTATED DEL PEAK 28(12Q24.31) WILD-TYPE
  CLUS_1                            88                             217
  CLUS_2                            37                             210
  CLUS_3                            15                              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(58) Variable = DEL PEAK 29(13Q14.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 29(13Q14.2) MUTATED        8     12     70     60     34     41
  DEL PEAK 29(13Q14.2) WILD-TYPE     13     24     49     36     75     31
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 29(13Q14.2) MUTATED        9     13
  DEL PEAK 29(13Q14.2) WILD-TYPE     11     27
D58V1, multiclass
        clus
vv       DEL PEAK 29(13Q14.2) MUTATED DEL PEAK 29(13Q14.2) WILD-TYPE
  CLUS_1                            8                             13
  CLUS_2                           12                             24
  CLUS_3                           70                             49
  CLUS_4                           60                             36
  CLUS_5                           34                             75
  CLUS_6                           41                             31
  CLUS_7                            9                             11
  CLUS_8                           13                             27
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(13Q14.2) MUTATED       64     47     67     56     13
  DEL PEAK 29(13Q14.2) WILD-TYPE     37    105     47     32     45
D58V2, multiclass
        clus
vv       DEL PEAK 29(13Q14.2) MUTATED DEL PEAK 29(13Q14.2) WILD-TYPE
  CLUS_1                           64                             37
  CLUS_2                           47                            105
  CLUS_3                           67                             47
  CLUS_4                           56                             32
  CLUS_5                           13                             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(13Q14.2) MUTATED      172     86     57    154     26
  DEL PEAK 29(13Q14.2) WILD-TYPE    103    321     41    103     17
D58V3, multiclass
        clus
vv       DEL PEAK 29(13Q14.2) MUTATED DEL PEAK 29(13Q14.2) WILD-TYPE
  CLUS_1                          172                            103
  CLUS_2                           86                            321
  CLUS_3                           57                             41
  CLUS_4                          154                            103
  CLUS_5                           26                             17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 29(13Q14.2) MUTATED       82     60     55     46     81     15
  DEL PEAK 29(13Q14.2) WILD-TYPE     71     53    122     85     47     40
D58V4, multiclass
        clus
vv       DEL PEAK 29(13Q14.2) MUTATED DEL PEAK 29(13Q14.2) WILD-TYPE
  CLUS_1                           82                             71
  CLUS_2                           60                             53
  CLUS_3                           55                            122
  CLUS_4                           46                             85
  CLUS_5                           81                             47
  CLUS_6                           15                             40
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(13Q14.2) MUTATED       78     59     56
  DEL PEAK 29(13Q14.2) WILD-TYPE     70     75     61
D58V5, multiclass
        clus
vv       DEL PEAK 29(13Q14.2) MUTATED DEL PEAK 29(13Q14.2) WILD-TYPE
  CLUS_1                           78                             70
  CLUS_2                           59                             75
  CLUS_3                           56                             61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 29(13Q14.2) MUTATED       19     22     58     18     66     10
  DEL PEAK 29(13Q14.2) WILD-TYPE     45     24     32     34     50     21
D58V6, multiclass
        clus
vv       DEL PEAK 29(13Q14.2) MUTATED DEL PEAK 29(13Q14.2) WILD-TYPE
  CLUS_1                           19                             45
  CLUS_2                           22                             24
  CLUS_3                           58                             32
  CLUS_4                           18                             34
  CLUS_5                           66                             50
  CLUS_6                           10                             21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(13Q14.2) MUTATED      261    176     56
  DEL PEAK 29(13Q14.2) WILD-TYPE    298    128    156
D58V7, multiclass
        clus
vv       DEL PEAK 29(13Q14.2) MUTATED DEL PEAK 29(13Q14.2) WILD-TYPE
  CLUS_1                          261                            298
  CLUS_2                          176                            128
  CLUS_3                           56                            156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 29(13Q14.2) MUTATED      130     95     19    110    114     25
  DEL PEAK 29(13Q14.2) WILD-TYPE    159     68     71    180     69     35
D58V8, multiclass
        clus
vv       DEL PEAK 29(13Q14.2) MUTATED DEL PEAK 29(13Q14.2) WILD-TYPE
  CLUS_1                          130                            159
  CLUS_2                           95                             68
  CLUS_3                           19                             71
  CLUS_4                          110                            180
  CLUS_5                          114                             69
  CLUS_6                           25                             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(13Q14.2) MUTATED      177     57    110    140
  DEL PEAK 29(13Q14.2) WILD-TYPE    128    155    159    135
D58V9, multiclass
        clus
vv       DEL PEAK 29(13Q14.2) MUTATED DEL PEAK 29(13Q14.2) WILD-TYPE
  CLUS_1                          177                            128
  CLUS_2                           57                            155
  CLUS_3                          110                            159
  CLUS_4                          140                            135
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 29(13Q14.2) MUTATED      168     68     76     49     35     88
  DEL PEAK 29(13Q14.2) WILD-TYPE    126     84    169     91     61     46
D58V10, multiclass
        clus
vv       DEL PEAK 29(13Q14.2) MUTATED DEL PEAK 29(13Q14.2) WILD-TYPE
  CLUS_1                          168                            126
  CLUS_2                           68                             84
  CLUS_3                           76                            169
  CLUS_4                           49                             91
  CLUS_5                           35                             61
  CLUS_6                           88                             46
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(13Q14.2) MUTATED       92     87     35     25     46
  DEL PEAK 29(13Q14.2) WILD-TYPE     88     52     64     86     87
D58V11, multiclass
        clus
vv       DEL PEAK 29(13Q14.2) MUTATED DEL PEAK 29(13Q14.2) WILD-TYPE
  CLUS_1                           92                             88
  CLUS_2                           87                             52
  CLUS_3                           35                             64
  CLUS_4                           25                             86
  CLUS_5                           46                             87
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(13Q14.2) MUTATED      163     84     38
  DEL PEAK 29(13Q14.2) WILD-TYPE    142    163     72
D58V12, multiclass
        clus
vv       DEL PEAK 29(13Q14.2) MUTATED DEL PEAK 29(13Q14.2) WILD-TYPE
  CLUS_1                          163                            142
  CLUS_2                           84                            163
  CLUS_3                           38                             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(59) Variable = DEL PEAK 30(14Q24.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 30(14Q24.1) MUTATED        4      7     47     63     10     22
  DEL PEAK 30(14Q24.1) WILD-TYPE     17     29     72     33     99     50
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 30(14Q24.1) MUTATED       10      8
  DEL PEAK 30(14Q24.1) WILD-TYPE     10     32
D59V1, multiclass
        clus
vv       DEL PEAK 30(14Q24.1) MUTATED DEL PEAK 30(14Q24.1) WILD-TYPE
  CLUS_1                            4                             17
  CLUS_2                            7                             29
  CLUS_3                           47                             72
  CLUS_4                           63                             33
  CLUS_5                           10                             99
  CLUS_6                           22                             50
  CLUS_7                           10                             10
  CLUS_8                            8                             32
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(14Q24.1) MUTATED       37     30     41     59      4
  DEL PEAK 30(14Q24.1) WILD-TYPE     64    122     73     29     54
D59V2, multiclass
        clus
vv       DEL PEAK 30(14Q24.1) MUTATED DEL PEAK 30(14Q24.1) WILD-TYPE
  CLUS_1                           37                             64
  CLUS_2                           30                            122
  CLUS_3                           41                             73
  CLUS_4                           59                             29
  CLUS_5                            4                             54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(14Q24.1) MUTATED       99     49     24    167     14
  DEL PEAK 30(14Q24.1) WILD-TYPE    176    358     74     90     29
D59V3, multiclass
        clus
vv       DEL PEAK 30(14Q24.1) MUTATED DEL PEAK 30(14Q24.1) WILD-TYPE
  CLUS_1                           99                            176
  CLUS_2                           49                            358
  CLUS_3                           24                             74
  CLUS_4                          167                             90
  CLUS_5                           14                             29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 30(14Q24.1) MUTATED       60     34     22     30     86     12
  DEL PEAK 30(14Q24.1) WILD-TYPE     93     79    155    101     42     43
D59V4, multiclass
        clus
vv       DEL PEAK 30(14Q24.1) MUTATED DEL PEAK 30(14Q24.1) WILD-TYPE
  CLUS_1                           60                             93
  CLUS_2                           34                             79
  CLUS_3                           22                            155
  CLUS_4                           30                            101
  CLUS_5                           86                             42
  CLUS_6                           12                             43
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(14Q24.1) MUTATED       77     27     33
  DEL PEAK 30(14Q24.1) WILD-TYPE     71    107     84
D59V5, multiclass
        clus
vv       DEL PEAK 30(14Q24.1) MUTATED DEL PEAK 30(14Q24.1) WILD-TYPE
  CLUS_1                           77                             71
  CLUS_2                           27                            107
  CLUS_3                           33                             84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 30(14Q24.1) MUTATED        6     12     58     13     40      8
  DEL PEAK 30(14Q24.1) WILD-TYPE     58     34     32     39     76     23
D59V6, multiclass
        clus
vv       DEL PEAK 30(14Q24.1) MUTATED DEL PEAK 30(14Q24.1) WILD-TYPE
  CLUS_1                            6                             58
  CLUS_2                           12                             34
  CLUS_3                           58                             32
  CLUS_4                           13                             39
  CLUS_5                           40                             76
  CLUS_6                            8                             23
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(14Q24.1) MUTATED      151    169     31
  DEL PEAK 30(14Q24.1) WILD-TYPE    408    135    181
D59V7, multiclass
        clus
vv       DEL PEAK 30(14Q24.1) MUTATED DEL PEAK 30(14Q24.1) WILD-TYPE
  CLUS_1                          151                            408
  CLUS_2                          169                            135
  CLUS_3                           31                            181
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 30(14Q24.1) MUTATED       69     68      6     68    124     16
  DEL PEAK 30(14Q24.1) WILD-TYPE    220     95     84    222     59     44
D59V8, multiclass
        clus
vv       DEL PEAK 30(14Q24.1) MUTATED DEL PEAK 30(14Q24.1) WILD-TYPE
  CLUS_1                           69                            220
  CLUS_2                           68                             95
  CLUS_3                            6                             84
  CLUS_4                           68                            222
  CLUS_5                          124                             59
  CLUS_6                           16                             44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(14Q24.1) MUTATED      170     39     55     79
  DEL PEAK 30(14Q24.1) WILD-TYPE    135    173    214    196
D59V9, multiclass
        clus
vv       DEL PEAK 30(14Q24.1) MUTATED DEL PEAK 30(14Q24.1) WILD-TYPE
  CLUS_1                          170                            135
  CLUS_2                           39                            173
  CLUS_3                           55                            214
  CLUS_4                           79                            196
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 30(14Q24.1) MUTATED       98     64     40     27     18     96
  DEL PEAK 30(14Q24.1) WILD-TYPE    196     88    205    113     78     38
D59V10, multiclass
        clus
vv       DEL PEAK 30(14Q24.1) MUTATED DEL PEAK 30(14Q24.1) WILD-TYPE
  CLUS_1                           98                            196
  CLUS_2                           64                             88
  CLUS_3                           40                            205
  CLUS_4                           27                            113
  CLUS_5                           18                             78
  CLUS_6                           96                             38
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(14Q24.1) MUTATED       56     89     19     24     31
  DEL PEAK 30(14Q24.1) WILD-TYPE    124     50     80     87    102
D59V11, multiclass
        clus
vv       DEL PEAK 30(14Q24.1) MUTATED DEL PEAK 30(14Q24.1) WILD-TYPE
  CLUS_1                           56                            124
  CLUS_2                           89                             50
  CLUS_3                           19                             80
  CLUS_4                           24                             87
  CLUS_5                           31                            102
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(14Q24.1) MUTATED      145     52     22
  DEL PEAK 30(14Q24.1) WILD-TYPE    160    195     88
D59V12, multiclass
        clus
vv       DEL PEAK 30(14Q24.1) MUTATED DEL PEAK 30(14Q24.1) WILD-TYPE
  CLUS_1                          145                            160
  CLUS_2                           52                            195
  CLUS_3                           22                             88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(60) Variable = DEL PEAK 31(15Q13.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 31(15Q13.1) MUTATED        5     11     41     58     24     34
  DEL PEAK 31(15Q13.1) WILD-TYPE     16     25     78     38     85     38
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 31(15Q13.1) MUTATED       10      8
  DEL PEAK 31(15Q13.1) WILD-TYPE     10     32
D60V1, multiclass
        clus
vv       DEL PEAK 31(15Q13.1) MUTATED DEL PEAK 31(15Q13.1) WILD-TYPE
  CLUS_1                            5                             16
  CLUS_2                           11                             25
  CLUS_3                           41                             78
  CLUS_4                           58                             38
  CLUS_5                           24                             85
  CLUS_6                           34                             38
  CLUS_7                           10                             10
  CLUS_8                            8                             32
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(15Q13.1) MUTATED       36     35     54     54     12
  DEL PEAK 31(15Q13.1) WILD-TYPE     65    117     60     34     46
D60V2, multiclass
        clus
vv       DEL PEAK 31(15Q13.1) MUTATED DEL PEAK 31(15Q13.1) WILD-TYPE
  CLUS_1                           36                             65
  CLUS_2                           35                            117
  CLUS_3                           54                             60
  CLUS_4                           54                             34
  CLUS_5                           12                             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(15Q13.1) MUTATED       95     51     44    172     13
  DEL PEAK 31(15Q13.1) WILD-TYPE    180    356     54     85     30
D60V3, multiclass
        clus
vv       DEL PEAK 31(15Q13.1) MUTATED DEL PEAK 31(15Q13.1) WILD-TYPE
  CLUS_1                           95                            180
  CLUS_2                           51                            356
  CLUS_3                           44                             54
  CLUS_4                          172                             85
  CLUS_5                           13                             30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 31(15Q13.1) MUTATED       60     40     28     30     83     14
  DEL PEAK 31(15Q13.1) WILD-TYPE     93     73    149    101     45     41
D60V4, multiclass
        clus
vv       DEL PEAK 31(15Q13.1) MUTATED DEL PEAK 31(15Q13.1) WILD-TYPE
  CLUS_1                           60                             93
  CLUS_2                           40                             73
  CLUS_3                           28                            149
  CLUS_4                           30                            101
  CLUS_5                           83                             45
  CLUS_6                           14                             41
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(15Q13.1) MUTATED       79     41     38
  DEL PEAK 31(15Q13.1) WILD-TYPE     69     93     79
D60V5, multiclass
        clus
vv       DEL PEAK 31(15Q13.1) MUTATED DEL PEAK 31(15Q13.1) WILD-TYPE
  CLUS_1                           79                             69
  CLUS_2                           41                             93
  CLUS_3                           38                             79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 31(15Q13.1) MUTATED       18      9     54     18     46     13
  DEL PEAK 31(15Q13.1) WILD-TYPE     46     37     36     34     70     18
D60V6, multiclass
        clus
vv       DEL PEAK 31(15Q13.1) MUTATED DEL PEAK 31(15Q13.1) WILD-TYPE
  CLUS_1                           18                             46
  CLUS_2                            9                             37
  CLUS_3                           54                             36
  CLUS_4                           18                             34
  CLUS_5                           46                             70
  CLUS_6                           13                             18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(15Q13.1) MUTATED      170    170     32
  DEL PEAK 31(15Q13.1) WILD-TYPE    389    134    180
D60V7, multiclass
        clus
vv       DEL PEAK 31(15Q13.1) MUTATED DEL PEAK 31(15Q13.1) WILD-TYPE
  CLUS_1                          170                            389
  CLUS_2                          170                            134
  CLUS_3                           32                            180
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 31(15Q13.1) MUTATED       77     74     12     67    120     22
  DEL PEAK 31(15Q13.1) WILD-TYPE    212     89     78    223     63     38
D60V8, multiclass
        clus
vv       DEL PEAK 31(15Q13.1) MUTATED DEL PEAK 31(15Q13.1) WILD-TYPE
  CLUS_1                           77                            212
  CLUS_2                           74                             89
  CLUS_3                           12                             78
  CLUS_4                           67                            223
  CLUS_5                          120                             63
  CLUS_6                           22                             38
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(15Q13.1) MUTATED      172     28     63    103
  DEL PEAK 31(15Q13.1) WILD-TYPE    133    184    206    172
D60V9, multiclass
        clus
vv       DEL PEAK 31(15Q13.1) MUTATED DEL PEAK 31(15Q13.1) WILD-TYPE
  CLUS_1                          172                            133
  CLUS_2                           28                            184
  CLUS_3                           63                            206
  CLUS_4                          103                            172
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 31(15Q13.1) MUTATED      109     71     30     44     17     95
  DEL PEAK 31(15Q13.1) WILD-TYPE    185     81    215     96     79     39
D60V10, multiclass
        clus
vv       DEL PEAK 31(15Q13.1) MUTATED DEL PEAK 31(15Q13.1) WILD-TYPE
  CLUS_1                          109                            185
  CLUS_2                           71                             81
  CLUS_3                           30                            215
  CLUS_4                           44                             96
  CLUS_5                           17                             79
  CLUS_6                           95                             39
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(15Q13.1) MUTATED       65     90     21     28     26
  DEL PEAK 31(15Q13.1) WILD-TYPE    115     49     78     83    107
D60V11, multiclass
        clus
vv       DEL PEAK 31(15Q13.1) MUTATED DEL PEAK 31(15Q13.1) WILD-TYPE
  CLUS_1                           65                            115
  CLUS_2                           90                             49
  CLUS_3                           21                             78
  CLUS_4                           28                             83
  CLUS_5                           26                            107
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(15Q13.1) MUTATED      139     54     37
  DEL PEAK 31(15Q13.1) WILD-TYPE    166    193     73
D60V12, multiclass
        clus
vv       DEL PEAK 31(15Q13.1) MUTATED DEL PEAK 31(15Q13.1) WILD-TYPE
  CLUS_1                          139                            166
  CLUS_2                           54                            193
  CLUS_3                           37                             73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(61) Variable = DEL PEAK 32(16Q24.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 32(16Q24.3) MUTATED       16     25     81     27     94     45
  DEL PEAK 32(16Q24.3) WILD-TYPE      5     11     38     69     15     27
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 32(16Q24.3) MUTATED       13     35
  DEL PEAK 32(16Q24.3) WILD-TYPE      7      5
D61V1, multiclass
        clus
vv       DEL PEAK 32(16Q24.3) MUTATED DEL PEAK 32(16Q24.3) WILD-TYPE
  CLUS_1                           16                              5
  CLUS_2                           25                             11
  CLUS_3                           81                             38
  CLUS_4                           27                             69
  CLUS_5                           94                             15
  CLUS_6                           45                             27
  CLUS_7                           13                              7
  CLUS_8                           35                              5
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(16Q24.3) MUTATED       74    124     71     22     45
  DEL PEAK 32(16Q24.3) WILD-TYPE     27     28     43     66     13
D61V2, multiclass
        clus
vv       DEL PEAK 32(16Q24.3) MUTATED DEL PEAK 32(16Q24.3) WILD-TYPE
  CLUS_1                           74                             27
  CLUS_2                          124                             28
  CLUS_3                           71                             43
  CLUS_4                           22                             66
  CLUS_5                           45                             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(16Q24.3) MUTATED      176    289     80    116     32
  DEL PEAK 32(16Q24.3) WILD-TYPE     99    118     18    141     11
D61V3, multiclass
        clus
vv       DEL PEAK 32(16Q24.3) MUTATED DEL PEAK 32(16Q24.3) WILD-TYPE
  CLUS_1                          176                             99
  CLUS_2                          289                            118
  CLUS_3                           80                             18
  CLUS_4                          116                            141
  CLUS_5                           32                             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 32(16Q24.3) MUTATED       86     86    145     74     53     32
  DEL PEAK 32(16Q24.3) WILD-TYPE     67     27     32     57     75     23
D61V4, multiclass
        clus
vv       DEL PEAK 32(16Q24.3) MUTATED DEL PEAK 32(16Q24.3) WILD-TYPE
  CLUS_1                           86                             67
  CLUS_2                           86                             27
  CLUS_3                          145                             32
  CLUS_4                           74                             57
  CLUS_5                           53                             75
  CLUS_6                           32                             23
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(16Q24.3) MUTATED       64    104     84
  DEL PEAK 32(16Q24.3) WILD-TYPE     84     30     33
D61V5, multiclass
        clus
vv       DEL PEAK 32(16Q24.3) MUTATED DEL PEAK 32(16Q24.3) WILD-TYPE
  CLUS_1                           64                             84
  CLUS_2                          104                             30
  CLUS_3                           84                             33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 32(16Q24.3) MUTATED       54     36     28     36     83     15
  DEL PEAK 32(16Q24.3) WILD-TYPE     10     10     62     16     33     16
D61V6, multiclass
        clus
vv       DEL PEAK 32(16Q24.3) MUTATED DEL PEAK 32(16Q24.3) WILD-TYPE
  CLUS_1                           54                             10
  CLUS_2                           36                             10
  CLUS_3                           28                             62
  CLUS_4                           36                             16
  CLUS_5                           83                             33
  CLUS_6                           15                             16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(16Q24.3) MUTATED      398    125    167
  DEL PEAK 32(16Q24.3) WILD-TYPE    161    179     45
D61V7, multiclass
        clus
vv       DEL PEAK 32(16Q24.3) MUTATED DEL PEAK 32(16Q24.3) WILD-TYPE
  CLUS_1                          398                            161
  CLUS_2                          125                            179
  CLUS_3                          167                             45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 32(16Q24.3) MUTATED      194     99     77    231     60     29
  DEL PEAK 32(16Q24.3) WILD-TYPE     95     64     13     59    123     31
D61V8, multiclass
        clus
vv       DEL PEAK 32(16Q24.3) MUTATED DEL PEAK 32(16Q24.3) WILD-TYPE
  CLUS_1                          194                             95
  CLUS_2                           99                             64
  CLUS_3                           77                             13
  CLUS_4                          231                             59
  CLUS_5                           60                            123
  CLUS_6                           29                             31
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(16Q24.3) MUTATED      131    151    205    194
  DEL PEAK 32(16Q24.3) WILD-TYPE    174     61     64     81
D61V9, multiclass
        clus
vv       DEL PEAK 32(16Q24.3) MUTATED DEL PEAK 32(16Q24.3) WILD-TYPE
  CLUS_1                          131                            174
  CLUS_2                          151                             61
  CLUS_3                          205                             64
  CLUS_4                          194                             81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 32(16Q24.3) MUTATED      192     71    186    120     62     50
  DEL PEAK 32(16Q24.3) WILD-TYPE    102     81     59     20     34     84
D61V10, multiclass
        clus
vv       DEL PEAK 32(16Q24.3) MUTATED DEL PEAK 32(16Q24.3) WILD-TYPE
  CLUS_1                          192                            102
  CLUS_2                           71                             81
  CLUS_3                          186                             59
  CLUS_4                          120                             20
  CLUS_5                           62                             34
  CLUS_6                           50                             84
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(16Q24.3) MUTATED      119     59     68     78     92
  DEL PEAK 32(16Q24.3) WILD-TYPE     61     80     31     33     41
D61V11, multiclass
        clus
vv       DEL PEAK 32(16Q24.3) MUTATED DEL PEAK 32(16Q24.3) WILD-TYPE
  CLUS_1                          119                             61
  CLUS_2                           59                             80
  CLUS_3                           68                             31
  CLUS_4                           78                             33
  CLUS_5                           92                             41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(16Q24.3) MUTATED      154    177     85
  DEL PEAK 32(16Q24.3) WILD-TYPE    151     70     25
D61V12, multiclass
        clus
vv       DEL PEAK 32(16Q24.3) MUTATED DEL PEAK 32(16Q24.3) WILD-TYPE
  CLUS_1                          154                            151
  CLUS_2                          177                             70
  CLUS_3                           85                             25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(62) Variable = DEL PEAK 33(17P12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 33(17P12) MUTATED       14     27     78     65     33     62     15
  DEL PEAK 33(17P12) WILD-TYPE      7      9     41     31     76     10      5
                              vv
clus                           CLUS_8
  DEL PEAK 33(17P12) MUTATED       24
  DEL PEAK 33(17P12) WILD-TYPE     16
D62V1, multiclass
        clus
vv       DEL PEAK 33(17P12) MUTATED DEL PEAK 33(17P12) WILD-TYPE
  CLUS_1                         14                            7
  CLUS_2                         27                            9
  CLUS_3                         78                           41
  CLUS_4                         65                           31
  CLUS_5                         33                           76
  CLUS_6                         62                           10
  CLUS_7                         15                            5
  CLUS_8                         24                           16
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(17P12) MUTATED       69     86     93     58     12
  DEL PEAK 33(17P12) WILD-TYPE     32     66     21     30     46
D62V2, multiclass
        clus
vv       DEL PEAK 33(17P12) MUTATED DEL PEAK 33(17P12) WILD-TYPE
  CLUS_1                         69                           32
  CLUS_2                         86                           66
  CLUS_3                         93                           21
  CLUS_4                         58                           30
  CLUS_5                         12                           46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(17P12) MUTATED      217    163     45    201     24
  DEL PEAK 33(17P12) WILD-TYPE     58    244     53     56     19
D62V3, multiclass
        clus
vv       DEL PEAK 33(17P12) MUTATED DEL PEAK 33(17P12) WILD-TYPE
  CLUS_1                        217                           58
  CLUS_2                        163                          244
  CLUS_3                         45                           53
  CLUS_4                        201                           56
  CLUS_5                         24                           19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 33(17P12) MUTATED      116     78     74     63     83     33
  DEL PEAK 33(17P12) WILD-TYPE     37     35    103     68     45     22
D62V4, multiclass
        clus
vv       DEL PEAK 33(17P12) MUTATED DEL PEAK 33(17P12) WILD-TYPE
  CLUS_1                        116                           37
  CLUS_2                         78                           35
  CLUS_3                         74                          103
  CLUS_4                         63                           68
  CLUS_5                         83                           45
  CLUS_6                         33                           22
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(17P12) MUTATED      115     67     66
  DEL PEAK 33(17P12) WILD-TYPE     33     67     51
D62V5, multiclass
        clus
vv       DEL PEAK 33(17P12) MUTATED DEL PEAK 33(17P12) WILD-TYPE
  CLUS_1                        115                           33
  CLUS_2                         67                           67
  CLUS_3                         66                           51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 33(17P12) MUTATED       23     22     65     32     80     26
  DEL PEAK 33(17P12) WILD-TYPE     41     24     25     20     36      5
D62V6, multiclass
        clus
vv       DEL PEAK 33(17P12) MUTATED DEL PEAK 33(17P12) WILD-TYPE
  CLUS_1                         23                           41
  CLUS_2                         22                           24
  CLUS_3                         65                           25
  CLUS_4                         32                           20
  CLUS_5                         80                           36
  CLUS_6                         26                            5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(17P12) MUTATED      322    219    106
  DEL PEAK 33(17P12) WILD-TYPE    237     85    106
D62V7, multiclass
        clus
vv       DEL PEAK 33(17P12) MUTATED DEL PEAK 33(17P12) WILD-TYPE
  CLUS_1                        322                          237
  CLUS_2                        219                           85
  CLUS_3                        106                          106
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 33(17P12) MUTATED      152    134     43    154    116     48
  DEL PEAK 33(17P12) WILD-TYPE    137     29     47    136     67     12
D62V8, multiclass
        clus
vv       DEL PEAK 33(17P12) MUTATED DEL PEAK 33(17P12) WILD-TYPE
  CLUS_1                        152                          137
  CLUS_2                        134                           29
  CLUS_3                         43                           47
  CLUS_4                        154                          136
  CLUS_5                        116                           67
  CLUS_6                         48                           12
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(17P12) MUTATED      216    103    146    174
  DEL PEAK 33(17P12) WILD-TYPE     89    109    123    101
D62V9, multiclass
        clus
vv       DEL PEAK 33(17P12) MUTATED DEL PEAK 33(17P12) WILD-TYPE
  CLUS_1                        216                           89
  CLUS_2                        103                          109
  CLUS_3                        146                          123
  CLUS_4                        174                          101
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 33(17P12) MUTATED      204    104    118     82     38     93
  DEL PEAK 33(17P12) WILD-TYPE     90     48    127     58     58     41
D62V10, multiclass
        clus
vv       DEL PEAK 33(17P12) MUTATED DEL PEAK 33(17P12) WILD-TYPE
  CLUS_1                        204                           90
  CLUS_2                        104                           48
  CLUS_3                        118                          127
  CLUS_4                         82                           58
  CLUS_5                         38                           58
  CLUS_6                         93                           41
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(17P12) MUTATED      110     92     49     59     83
  DEL PEAK 33(17P12) WILD-TYPE     70     47     50     52     50
D62V11, multiclass
        clus
vv       DEL PEAK 33(17P12) MUTATED DEL PEAK 33(17P12) WILD-TYPE
  CLUS_1                        110                           70
  CLUS_2                         92                           47
  CLUS_3                         49                           50
  CLUS_4                         59                           52
  CLUS_5                         83                           50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(17P12) MUTATED      193    140     60
  DEL PEAK 33(17P12) WILD-TYPE    112    107     50
D62V12, multiclass
        clus
vv       DEL PEAK 33(17P12) MUTATED DEL PEAK 33(17P12) WILD-TYPE
  CLUS_1                        193                          112
  CLUS_2                        140                          107
  CLUS_3                         60                           50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(63) Variable = DEL PEAK 34(17Q21.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 34(17Q21.31) MUTATED        7     17     28     53     13     50
  DEL PEAK 34(17Q21.31) WILD-TYPE     14     19     91     43     96     22
                                 vv
clus                              CLUS_7 CLUS_8
  DEL PEAK 34(17Q21.31) MUTATED        9     15
  DEL PEAK 34(17Q21.31) WILD-TYPE     11     25
D63V1, multiclass
        clus
vv       DEL PEAK 34(17Q21.31) MUTATED DEL PEAK 34(17Q21.31) WILD-TYPE
  CLUS_1                             7                              14
  CLUS_2                            17                              19
  CLUS_3                            28                              91
  CLUS_4                            53                              43
  CLUS_5                            13                              96
  CLUS_6                            50                              22
  CLUS_7                             9                              11
  CLUS_8                            15                              25
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 34(17Q21.31) MUTATED       24     49     70     46      3
  DEL PEAK 34(17Q21.31) WILD-TYPE     77    103     44     42     55
D63V2, multiclass
        clus
vv       DEL PEAK 34(17Q21.31) MUTATED DEL PEAK 34(17Q21.31) WILD-TYPE
  CLUS_1                            24                              77
  CLUS_2                            49                             103
  CLUS_3                            70                              44
  CLUS_4                            46                              42
  CLUS_5                             3                              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 34(17Q21.31) MUTATED       92     83     24    165      7
  DEL PEAK 34(17Q21.31) WILD-TYPE    183    324     74     92     36
D63V3, multiclass
        clus
vv       DEL PEAK 34(17Q21.31) MUTATED DEL PEAK 34(17Q21.31) WILD-TYPE
  CLUS_1                            92                             183
  CLUS_2                            83                             324
  CLUS_3                            24                              74
  CLUS_4                           165                              92
  CLUS_5                             7                              36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 34(17Q21.31) MUTATED       49     39     21     38     79     15
  DEL PEAK 34(17Q21.31) WILD-TYPE    104     74    156     93     49     40
D63V4, multiclass
        clus
vv       DEL PEAK 34(17Q21.31) MUTATED DEL PEAK 34(17Q21.31) WILD-TYPE
  CLUS_1                            49                             104
  CLUS_2                            39                              74
  CLUS_3                            21                             156
  CLUS_4                            38                              93
  CLUS_5                            79                              49
  CLUS_6                            15                              40
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(17Q21.31) MUTATED       89     25     44
  DEL PEAK 34(17Q21.31) WILD-TYPE     59    109     73
D63V5, multiclass
        clus
vv       DEL PEAK 34(17Q21.31) MUTATED DEL PEAK 34(17Q21.31) WILD-TYPE
  CLUS_1                            89                              59
  CLUS_2                            25                             109
  CLUS_3                            44                              73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 34(17Q21.31) MUTATED       10     13     52     18     39     26
  DEL PEAK 34(17Q21.31) WILD-TYPE     54     33     38     34     77      5
D63V6, multiclass
        clus
vv       DEL PEAK 34(17Q21.31) MUTATED DEL PEAK 34(17Q21.31) WILD-TYPE
  CLUS_1                            10                              54
  CLUS_2                            13                              33
  CLUS_3                            52                              38
  CLUS_4                            18                              34
  CLUS_5                            39                              77
  CLUS_6                            26                               5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(17Q21.31) MUTATED      136    182     52
  DEL PEAK 34(17Q21.31) WILD-TYPE    423    122    160
D63V7, multiclass
        clus
vv       DEL PEAK 34(17Q21.31) MUTATED DEL PEAK 34(17Q21.31) WILD-TYPE
  CLUS_1                           136                             423
  CLUS_2                           182                             122
  CLUS_3                            52                             160
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 34(17Q21.31) MUTATED       44     90     21     79     96     40
  DEL PEAK 34(17Q21.31) WILD-TYPE    245     73     69    211     87     20
D63V8, multiclass
        clus
vv       DEL PEAK 34(17Q21.31) MUTATED DEL PEAK 34(17Q21.31) WILD-TYPE
  CLUS_1                            44                             245
  CLUS_2                            90                              73
  CLUS_3                            21                              69
  CLUS_4                            79                             211
  CLUS_5                            96                              87
  CLUS_6                            40                              20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(17Q21.31) MUTATED      161     46     61     95
  DEL PEAK 34(17Q21.31) WILD-TYPE    144    166    208    180
D63V9, multiclass
        clus
vv       DEL PEAK 34(17Q21.31) MUTATED DEL PEAK 34(17Q21.31) WILD-TYPE
  CLUS_1                           161                             144
  CLUS_2                            46                             166
  CLUS_3                            61                             208
  CLUS_4                            95                             180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 34(17Q21.31) MUTATED      109     73     57     34     11     79
  DEL PEAK 34(17Q21.31) WILD-TYPE    185     79    188    106     85     55
D63V10, multiclass
        clus
vv       DEL PEAK 34(17Q21.31) MUTATED DEL PEAK 34(17Q21.31) WILD-TYPE
  CLUS_1                           109                             185
  CLUS_2                            73                              79
  CLUS_3                            57                             188
  CLUS_4                            34                             106
  CLUS_5                            11                              85
  CLUS_6                            79                              55
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 34(17Q21.31) MUTATED       55     76     19     30     46
  DEL PEAK 34(17Q21.31) WILD-TYPE    125     63     80     81     87
D63V11, multiclass
        clus
vv       DEL PEAK 34(17Q21.31) MUTATED DEL PEAK 34(17Q21.31) WILD-TYPE
  CLUS_1                            55                             125
  CLUS_2                            76                              63
  CLUS_3                            19                              80
  CLUS_4                            30                              81
  CLUS_5                            46                              87
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(17Q21.31) MUTATED      128     70     28
  DEL PEAK 34(17Q21.31) WILD-TYPE    177    177     82
D63V12, multiclass
        clus
vv       DEL PEAK 34(17Q21.31) MUTATED DEL PEAK 34(17Q21.31) WILD-TYPE
  CLUS_1                           128                             177
  CLUS_2                            70                             177
  CLUS_3                            28                              82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(64) Variable = DEL PEAK 35(18Q23) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 35(18Q23) MUTATED        6     13     38     38     18     37      6
  DEL PEAK 35(18Q23) WILD-TYPE     15     23     81     58     91     35     14
                              vv
clus                           CLUS_8
  DEL PEAK 35(18Q23) MUTATED        9
  DEL PEAK 35(18Q23) WILD-TYPE     31
D64V1, multiclass
        clus
vv       DEL PEAK 35(18Q23) MUTATED DEL PEAK 35(18Q23) WILD-TYPE
  CLUS_1                          6                           15
  CLUS_2                         13                           23
  CLUS_3                         38                           81
  CLUS_4                         38                           58
  CLUS_5                         18                           91
  CLUS_6                         37                           35
  CLUS_7                          6                           14
  CLUS_8                          9                           31
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 35(18Q23) MUTATED       31     35     54     35     10
  DEL PEAK 35(18Q23) WILD-TYPE     70    117     60     53     48
D64V2, multiclass
        clus
vv       DEL PEAK 35(18Q23) MUTATED DEL PEAK 35(18Q23) WILD-TYPE
  CLUS_1                         31                           70
  CLUS_2                         35                          117
  CLUS_3                         54                           60
  CLUS_4                         35                           53
  CLUS_5                         10                           48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 35(18Q23) MUTATED      112     68     36    127     11
  DEL PEAK 35(18Q23) WILD-TYPE    163    339     62    130     32
D64V3, multiclass
        clus
vv       DEL PEAK 35(18Q23) MUTATED DEL PEAK 35(18Q23) WILD-TYPE
  CLUS_1                        112                          163
  CLUS_2                         68                          339
  CLUS_3                         36                           62
  CLUS_4                        127                          130
  CLUS_5                         11                           32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 35(18Q23) MUTATED       63     56     32     30     57     14
  DEL PEAK 35(18Q23) WILD-TYPE     90     57    145    101     71     41
D64V4, multiclass
        clus
vv       DEL PEAK 35(18Q23) MUTATED DEL PEAK 35(18Q23) WILD-TYPE
  CLUS_1                         63                           90
  CLUS_2                         56                           57
  CLUS_3                         32                          145
  CLUS_4                         30                          101
  CLUS_5                         57                           71
  CLUS_6                         14                           41
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(18Q23) MUTATED       63     36     29
  DEL PEAK 35(18Q23) WILD-TYPE     85     98     88
D64V5, multiclass
        clus
vv       DEL PEAK 35(18Q23) MUTATED DEL PEAK 35(18Q23) WILD-TYPE
  CLUS_1                         63                           85
  CLUS_2                         36                           98
  CLUS_3                         29                           88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 35(18Q23) MUTATED       13     15     32     12     47      9
  DEL PEAK 35(18Q23) WILD-TYPE     51     31     58     40     69     22
D64V6, multiclass
        clus
vv       DEL PEAK 35(18Q23) MUTATED DEL PEAK 35(18Q23) WILD-TYPE
  CLUS_1                         13                           51
  CLUS_2                         15                           31
  CLUS_3                         32                           58
  CLUS_4                         12                           40
  CLUS_5                         47                           69
  CLUS_6                          9                           22
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(18Q23) MUTATED      168    139     46
  DEL PEAK 35(18Q23) WILD-TYPE    391    165    166
D64V7, multiclass
        clus
vv       DEL PEAK 35(18Q23) MUTATED DEL PEAK 35(18Q23) WILD-TYPE
  CLUS_1                        168                          391
  CLUS_2                        139                          165
  CLUS_3                         46                          166
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 35(18Q23) MUTATED       61     94     19     74     77     28
  DEL PEAK 35(18Q23) WILD-TYPE    228     69     71    216    106     32
D64V8, multiclass
        clus
vv       DEL PEAK 35(18Q23) MUTATED DEL PEAK 35(18Q23) WILD-TYPE
  CLUS_1                         61                          228
  CLUS_2                         94                           69
  CLUS_3                         19                           71
  CLUS_4                         74                          216
  CLUS_5                         77                          106
  CLUS_6                         28                           32
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(18Q23) MUTATED      137     48     73     92
  DEL PEAK 35(18Q23) WILD-TYPE    168    164    196    183
D64V9, multiclass
        clus
vv       DEL PEAK 35(18Q23) MUTATED DEL PEAK 35(18Q23) WILD-TYPE
  CLUS_1                        137                          168
  CLUS_2                         48                          164
  CLUS_3                         73                          196
  CLUS_4                         92                          183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 35(18Q23) MUTATED      112     70     59     38     17     54
  DEL PEAK 35(18Q23) WILD-TYPE    182     82    186    102     79     80
D64V10, multiclass
        clus
vv       DEL PEAK 35(18Q23) MUTATED DEL PEAK 35(18Q23) WILD-TYPE
  CLUS_1                        112                          182
  CLUS_2                         70                           82
  CLUS_3                         59                          186
  CLUS_4                         38                          102
  CLUS_5                         17                           79
  CLUS_6                         54                           80
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 35(18Q23) MUTATED       61     62     26     27     39
  DEL PEAK 35(18Q23) WILD-TYPE    119     77     73     84     94
D64V11, multiclass
        clus
vv       DEL PEAK 35(18Q23) MUTATED DEL PEAK 35(18Q23) WILD-TYPE
  CLUS_1                         61                          119
  CLUS_2                         62                           77
  CLUS_3                         26                           73
  CLUS_4                         27                           84
  CLUS_5                         39                           94
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(18Q23) MUTATED      109     77     29
  DEL PEAK 35(18Q23) WILD-TYPE    196    170     81
D64V12, multiclass
        clus
vv       DEL PEAK 35(18Q23) MUTATED DEL PEAK 35(18Q23) WILD-TYPE
  CLUS_1                        109                          196
  CLUS_2                         77                          170
  CLUS_3                         29                           81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(65) Variable = DEL PEAK 36(19P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 36(19P13.3) MUTATED        7     10     48     57     13     35
  DEL PEAK 36(19P13.3) WILD-TYPE     14     26     71     39     96     37
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 36(19P13.3) MUTATED        6      6
  DEL PEAK 36(19P13.3) WILD-TYPE     14     34
D65V1, multiclass
        clus
vv       DEL PEAK 36(19P13.3) MUTATED DEL PEAK 36(19P13.3) WILD-TYPE
  CLUS_1                            7                             14
  CLUS_2                           10                             26
  CLUS_3                           48                             71
  CLUS_4                           57                             39
  CLUS_5                           13                             96
  CLUS_6                           35                             37
  CLUS_7                            6                             14
  CLUS_8                            6                             34
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 36(19P13.3) MUTATED       44     28     54     53      3
  DEL PEAK 36(19P13.3) WILD-TYPE     57    124     60     35     55
D65V2, multiclass
        clus
vv       DEL PEAK 36(19P13.3) MUTATED DEL PEAK 36(19P13.3) WILD-TYPE
  CLUS_1                           44                             57
  CLUS_2                           28                            124
  CLUS_3                           54                             60
  CLUS_4                           53                             35
  CLUS_5                            3                             55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 36(19P13.3) MUTATED      137     38     15    159     14
  DEL PEAK 36(19P13.3) WILD-TYPE    138    369     83     98     29
D65V3, multiclass
        clus
vv       DEL PEAK 36(19P13.3) MUTATED DEL PEAK 36(19P13.3) WILD-TYPE
  CLUS_1                          137                            138
  CLUS_2                           38                            369
  CLUS_3                           15                             83
  CLUS_4                          159                             98
  CLUS_5                           14                             29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 36(19P13.3) MUTATED       77     31     15     33     70      8
  DEL PEAK 36(19P13.3) WILD-TYPE     76     82    162     98     58     47
D65V4, multiclass
        clus
vv       DEL PEAK 36(19P13.3) MUTATED DEL PEAK 36(19P13.3) WILD-TYPE
  CLUS_1                           77                             76
  CLUS_2                           31                             82
  CLUS_3                           15                            162
  CLUS_4                           33                             98
  CLUS_5                           70                             58
  CLUS_6                            8                             47
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(19P13.3) MUTATED       80     37     32
  DEL PEAK 36(19P13.3) WILD-TYPE     68     97     85
D65V5, multiclass
        clus
vv       DEL PEAK 36(19P13.3) MUTATED DEL PEAK 36(19P13.3) WILD-TYPE
  CLUS_1                           80                             68
  CLUS_2                           37                             97
  CLUS_3                           32                             85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 36(19P13.3) MUTATED        6     16     50     13     47     17
  DEL PEAK 36(19P13.3) WILD-TYPE     58     30     40     39     69     14
D65V6, multiclass
        clus
vv       DEL PEAK 36(19P13.3) MUTATED DEL PEAK 36(19P13.3) WILD-TYPE
  CLUS_1                            6                             58
  CLUS_2                           16                             30
  CLUS_3                           50                             40
  CLUS_4                           13                             39
  CLUS_5                           47                             69
  CLUS_6                           17                             14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(19P13.3) MUTATED      170    164     27
  DEL PEAK 36(19P13.3) WILD-TYPE    389    140    185
D65V7, multiclass
        clus
vv       DEL PEAK 36(19P13.3) MUTATED DEL PEAK 36(19P13.3) WILD-TYPE
  CLUS_1                          170                            389
  CLUS_2                          164                            140
  CLUS_3                           27                            185
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 36(19P13.3) MUTATED       81     88      4     61    108     19
  DEL PEAK 36(19P13.3) WILD-TYPE    208     75     86    229     75     41
D65V8, multiclass
        clus
vv       DEL PEAK 36(19P13.3) MUTATED DEL PEAK 36(19P13.3) WILD-TYPE
  CLUS_1                           81                            208
  CLUS_2                           88                             75
  CLUS_3                            4                             86
  CLUS_4                           61                            229
  CLUS_5                          108                             75
  CLUS_6                           19                             41
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(19P13.3) MUTATED      170     31     64     88
  DEL PEAK 36(19P13.3) WILD-TYPE    135    181    205    187
D65V9, multiclass
        clus
vv       DEL PEAK 36(19P13.3) MUTATED DEL PEAK 36(19P13.3) WILD-TYPE
  CLUS_1                          170                            135
  CLUS_2                           31                            181
  CLUS_3                           64                            205
  CLUS_4                           88                            187
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 36(19P13.3) MUTATED      113     73     34     25     23     85
  DEL PEAK 36(19P13.3) WILD-TYPE    181     79    211    115     73     49
D65V10, multiclass
        clus
vv       DEL PEAK 36(19P13.3) MUTATED DEL PEAK 36(19P13.3) WILD-TYPE
  CLUS_1                          113                            181
  CLUS_2                           73                             79
  CLUS_3                           34                            211
  CLUS_4                           25                            115
  CLUS_5                           23                             73
  CLUS_6                           85                             49
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 36(19P13.3) MUTATED       62     82     17     18     37
  DEL PEAK 36(19P13.3) WILD-TYPE    118     57     82     93     96
D65V11, multiclass
        clus
vv       DEL PEAK 36(19P13.3) MUTATED DEL PEAK 36(19P13.3) WILD-TYPE
  CLUS_1                           62                            118
  CLUS_2                           82                             57
  CLUS_3                           17                             82
  CLUS_4                           18                             93
  CLUS_5                           37                             96
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(19P13.3) MUTATED      139     60     17
  DEL PEAK 36(19P13.3) WILD-TYPE    166    187     93
D65V12, multiclass
        clus
vv       DEL PEAK 36(19P13.3) MUTATED DEL PEAK 36(19P13.3) WILD-TYPE
  CLUS_1                          139                            166
  CLUS_2                           60                            187
  CLUS_3                           17                             93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(66) Variable = DEL PEAK 37(19Q13.32) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 37(19Q13.32) MUTATED        4      7     23     26      7     28
  DEL PEAK 37(19Q13.32) WILD-TYPE     17     29     96     70    102     44
                                 vv
clus                              CLUS_7 CLUS_8
  DEL PEAK 37(19Q13.32) MUTATED        1      3
  DEL PEAK 37(19Q13.32) WILD-TYPE     19     37
D66V1, multiclass
        clus
vv       DEL PEAK 37(19Q13.32) MUTATED DEL PEAK 37(19Q13.32) WILD-TYPE
  CLUS_1                             4                              17
  CLUS_2                             7                              29
  CLUS_3                            23                              96
  CLUS_4                            26                              70
  CLUS_5                             7                             102
  CLUS_6                            28                              44
  CLUS_7                             1                              19
  CLUS_8                             3                              37
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 37(19Q13.32) MUTATED       26     11     36     24      2
  DEL PEAK 37(19Q13.32) WILD-TYPE     75    141     78     64     56
D66V2, multiclass
        clus
vv       DEL PEAK 37(19Q13.32) MUTATED DEL PEAK 37(19Q13.32) WILD-TYPE
  CLUS_1                            26                              75
  CLUS_2                            11                             141
  CLUS_3                            36                              78
  CLUS_4                            24                              64
  CLUS_5                             2                              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 37(19Q13.32) MUTATED       92     22      8     88      6
  DEL PEAK 37(19Q13.32) WILD-TYPE    183    385     90    169     37
D66V3, multiclass
        clus
vv       DEL PEAK 37(19Q13.32) MUTATED DEL PEAK 37(19Q13.32) WILD-TYPE
  CLUS_1                            92                             183
  CLUS_2                            22                             385
  CLUS_3                             8                              90
  CLUS_4                            88                             169
  CLUS_5                             6                              37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 37(19Q13.32) MUTATED       47     22     10     18     46      6
  DEL PEAK 37(19Q13.32) WILD-TYPE    106     91    167    113     82     49
D66V4, multiclass
        clus
vv       DEL PEAK 37(19Q13.32) MUTATED DEL PEAK 37(19Q13.32) WILD-TYPE
  CLUS_1                            47                             106
  CLUS_2                            22                              91
  CLUS_3                            10                             167
  CLUS_4                            18                             113
  CLUS_5                            46                              82
  CLUS_6                             6                              49
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(19Q13.32) MUTATED       45     20     15
  DEL PEAK 37(19Q13.32) WILD-TYPE    103    114    102
D66V5, multiclass
        clus
vv       DEL PEAK 37(19Q13.32) MUTATED DEL PEAK 37(19Q13.32) WILD-TYPE
  CLUS_1                            45                             103
  CLUS_2                            20                             114
  CLUS_3                            15                             102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 37(19Q13.32) MUTATED        4      6     30      5     24     11
  DEL PEAK 37(19Q13.32) WILD-TYPE     60     40     60     47     92     20
D66V6, multiclass
        clus
vv       DEL PEAK 37(19Q13.32) MUTATED DEL PEAK 37(19Q13.32) WILD-TYPE
  CLUS_1                             4                              60
  CLUS_2                             6                              40
  CLUS_3                            30                              60
  CLUS_4                             5                              47
  CLUS_5                            24                              92
  CLUS_6                            11                              20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(19Q13.32) MUTATED      101    103     11
  DEL PEAK 37(19Q13.32) WILD-TYPE    458    201    201
D66V7, multiclass
        clus
vv       DEL PEAK 37(19Q13.32) MUTATED DEL PEAK 37(19Q13.32) WILD-TYPE
  CLUS_1                           101                             458
  CLUS_2                           103                             201
  CLUS_3                            11                             201
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 37(19Q13.32) MUTATED       56     55      3     24     58     19
  DEL PEAK 37(19Q13.32) WILD-TYPE    233    108     87    266    125     41
D66V8, multiclass
        clus
vv       DEL PEAK 37(19Q13.32) MUTATED DEL PEAK 37(19Q13.32) WILD-TYPE
  CLUS_1                            56                             233
  CLUS_2                            55                             108
  CLUS_3                             3                              87
  CLUS_4                            24                             266
  CLUS_5                            58                             125
  CLUS_6                            19                              41
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(19Q13.32) MUTATED      102     16     37     54
  DEL PEAK 37(19Q13.32) WILD-TYPE    203    196    232    221
D66V9, multiclass
        clus
vv       DEL PEAK 37(19Q13.32) MUTATED DEL PEAK 37(19Q13.32) WILD-TYPE
  CLUS_1                           102                             203
  CLUS_2                            16                             196
  CLUS_3                            37                             232
  CLUS_4                            54                             221
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 37(19Q13.32) MUTATED       71     44     16     16     16     46
  DEL PEAK 37(19Q13.32) WILD-TYPE    223    108    229    124     80     88
D66V10, multiclass
        clus
vv       DEL PEAK 37(19Q13.32) MUTATED DEL PEAK 37(19Q13.32) WILD-TYPE
  CLUS_1                            71                             223
  CLUS_2                            44                             108
  CLUS_3                            16                             229
  CLUS_4                            16                             124
  CLUS_5                            16                              80
  CLUS_6                            46                              88
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 37(19Q13.32) MUTATED       43     50     16      7     18
  DEL PEAK 37(19Q13.32) WILD-TYPE    137     89     83    104    115
D66V11, multiclass
        clus
vv       DEL PEAK 37(19Q13.32) MUTATED DEL PEAK 37(19Q13.32) WILD-TYPE
  CLUS_1                            43                             137
  CLUS_2                            50                              89
  CLUS_3                            16                              83
  CLUS_4                             7                             104
  CLUS_5                            18                             115
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(19Q13.32) MUTATED       92     36      6
  DEL PEAK 37(19Q13.32) WILD-TYPE    213    211    104
D66V12, multiclass
        clus
vv       DEL PEAK 37(19Q13.32) MUTATED DEL PEAK 37(19Q13.32) WILD-TYPE
  CLUS_1                            92                             213
  CLUS_2                            36                             211
  CLUS_3                             6                             104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(67) Variable = DEL PEAK 38(20P13) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 38(20P13) MUTATED        1      3     28     25      3     16      3
  DEL PEAK 38(20P13) WILD-TYPE     20     33     91     71    106     56     17
                              vv
clus                           CLUS_8
  DEL PEAK 38(20P13) MUTATED        1
  DEL PEAK 38(20P13) WILD-TYPE     39
D67V1, multiclass
        clus
vv       DEL PEAK 38(20P13) MUTATED DEL PEAK 38(20P13) WILD-TYPE
  CLUS_1                          1                           20
  CLUS_2                          3                           33
  CLUS_3                         28                           91
  CLUS_4                         25                           71
  CLUS_5                          3                          106
  CLUS_6                         16                           56
  CLUS_7                          3                           17
  CLUS_8                          1                           39
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 38(20P13) MUTATED       23      9     25     23      0
  DEL PEAK 38(20P13) WILD-TYPE     78    143     89     65     58
D67V2, multiclass
        clus
vv       DEL PEAK 38(20P13) MUTATED DEL PEAK 38(20P13) WILD-TYPE
  CLUS_1                         23                           78
  CLUS_2                          9                          143
  CLUS_3                         25                           89
  CLUS_4                         23                           65
  CLUS_5                          0                           58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 38(20P13) MUTATED       49     18      7     78      8
  DEL PEAK 38(20P13) WILD-TYPE    226    389     91    179     35
D67V3, multiclass
        clus
vv       DEL PEAK 38(20P13) MUTATED DEL PEAK 38(20P13) WILD-TYPE
  CLUS_1                         49                          226
  CLUS_2                         18                          389
  CLUS_3                          7                           91
  CLUS_4                         78                          179
  CLUS_5                          8                           35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 38(20P13) MUTATED       28     16      7      7     44      4
  DEL PEAK 38(20P13) WILD-TYPE    125     97    170    124     84     51
D67V4, multiclass
        clus
vv       DEL PEAK 38(20P13) MUTATED DEL PEAK 38(20P13) WILD-TYPE
  CLUS_1                         28                          125
  CLUS_2                         16                           97
  CLUS_3                          7                          170
  CLUS_4                          7                          124
  CLUS_5                         44                           84
  CLUS_6                          4                           51
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(20P13) MUTATED       36     11     17
  DEL PEAK 38(20P13) WILD-TYPE    112    123    100
D67V5, multiclass
        clus
vv       DEL PEAK 38(20P13) MUTATED DEL PEAK 38(20P13) WILD-TYPE
  CLUS_1                         36                          112
  CLUS_2                         11                          123
  CLUS_3                         17                          100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 38(20P13) MUTATED        5      4     24      4     20      7
  DEL PEAK 38(20P13) WILD-TYPE     59     42     66     48     96     24
D67V6, multiclass
        clus
vv       DEL PEAK 38(20P13) MUTATED DEL PEAK 38(20P13) WILD-TYPE
  CLUS_1                          5                           59
  CLUS_2                          4                           42
  CLUS_3                         24                           66
  CLUS_4                          4                           48
  CLUS_5                         20                           96
  CLUS_6                          7                           24
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(20P13) MUTATED       67     83      9
  DEL PEAK 38(20P13) WILD-TYPE    492    221    203
D67V7, multiclass
        clus
vv       DEL PEAK 38(20P13) MUTATED DEL PEAK 38(20P13) WILD-TYPE
  CLUS_1                         67                          492
  CLUS_2                         83                          221
  CLUS_3                          9                          203
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 38(20P13) MUTATED       37     33      2     20     56     11
  DEL PEAK 38(20P13) WILD-TYPE    252    130     88    270    127     49
D67V8, multiclass
        clus
vv       DEL PEAK 38(20P13) MUTATED DEL PEAK 38(20P13) WILD-TYPE
  CLUS_1                         37                          252
  CLUS_2                         33                          130
  CLUS_3                          2                           88
  CLUS_4                         20                          270
  CLUS_5                         56                          127
  CLUS_6                         11                           49
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(20P13) MUTATED       85     11     22     33
  DEL PEAK 38(20P13) WILD-TYPE    220    201    247    242
D67V9, multiclass
        clus
vv       DEL PEAK 38(20P13) MUTATED DEL PEAK 38(20P13) WILD-TYPE
  CLUS_1                         85                          220
  CLUS_2                         11                          201
  CLUS_3                         22                          247
  CLUS_4                         33                          242
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 38(20P13) MUTATED       46     36     11      5     10     43
  DEL PEAK 38(20P13) WILD-TYPE    248    116    234    135     86     91
D67V10, multiclass
        clus
vv       DEL PEAK 38(20P13) MUTATED DEL PEAK 38(20P13) WILD-TYPE
  CLUS_1                         46                          248
  CLUS_2                         36                          116
  CLUS_3                         11                          234
  CLUS_4                          5                          135
  CLUS_5                         10                           86
  CLUS_6                         43                           91
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 38(20P13) MUTATED       21     46      9      6     11
  DEL PEAK 38(20P13) WILD-TYPE    159     93     90    105    122
D67V11, multiclass
        clus
vv       DEL PEAK 38(20P13) MUTATED DEL PEAK 38(20P13) WILD-TYPE
  CLUS_1                         21                          159
  CLUS_2                         46                           93
  CLUS_3                          9                           90
  CLUS_4                          6                          105
  CLUS_5                         11                          122
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(20P13) MUTATED       72     20      1
  DEL PEAK 38(20P13) WILD-TYPE    233    227    109
D67V12, multiclass
        clus
vv       DEL PEAK 38(20P13) MUTATED DEL PEAK 38(20P13) WILD-TYPE
  CLUS_1                         72                          233
  CLUS_2                         20                          227
  CLUS_3                          1                          109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(68) Variable = DEL PEAK 39(21Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 39(21Q11.2) MUTATED        3     11     37     16     11     23
  DEL PEAK 39(21Q11.2) WILD-TYPE     18     25     82     80     98     49
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 39(21Q11.2) MUTATED        3      4
  DEL PEAK 39(21Q11.2) WILD-TYPE     17     36
D68V1, multiclass
        clus
vv       DEL PEAK 39(21Q11.2) MUTATED DEL PEAK 39(21Q11.2) WILD-TYPE
  CLUS_1                            3                             18
  CLUS_2                           11                             25
  CLUS_3                           37                             82
  CLUS_4                           16                             80
  CLUS_5                           11                             98
  CLUS_6                           23                             49
  CLUS_7                            3                             17
  CLUS_8                            4                             36
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 39(21Q11.2) MUTATED       31     22     32     15      8
  DEL PEAK 39(21Q11.2) WILD-TYPE     70    130     82     73     50
D68V2, multiclass
        clus
vv       DEL PEAK 39(21Q11.2) MUTATED DEL PEAK 39(21Q11.2) WILD-TYPE
  CLUS_1                           31                             70
  CLUS_2                           22                            130
  CLUS_3                           32                             82
  CLUS_4                           15                             73
  CLUS_5                            8                             50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 39(21Q11.2) MUTATED       93     31     17     66     10
  DEL PEAK 39(21Q11.2) WILD-TYPE    182    376     81    191     33
D68V3, multiclass
        clus
vv       DEL PEAK 39(21Q11.2) MUTATED DEL PEAK 39(21Q11.2) WILD-TYPE
  CLUS_1                           93                            182
  CLUS_2                           31                            376
  CLUS_3                           17                             81
  CLUS_4                           66                            191
  CLUS_5                           10                             33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 39(21Q11.2) MUTATED       49     29     21     19     21      8
  DEL PEAK 39(21Q11.2) WILD-TYPE    104     84    156    112    107     47
D68V4, multiclass
        clus
vv       DEL PEAK 39(21Q11.2) MUTATED DEL PEAK 39(21Q11.2) WILD-TYPE
  CLUS_1                           49                            104
  CLUS_2                           29                             84
  CLUS_3                           21                            156
  CLUS_4                           19                            112
  CLUS_5                           21                            107
  CLUS_6                            8                             47
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(21Q11.2) MUTATED       42     26     21
  DEL PEAK 39(21Q11.2) WILD-TYPE    106    108     96
D68V5, multiclass
        clus
vv       DEL PEAK 39(21Q11.2) MUTATED DEL PEAK 39(21Q11.2) WILD-TYPE
  CLUS_1                           42                            106
  CLUS_2                           26                            108
  CLUS_3                           21                             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 39(21Q11.2) MUTATED        9      8     18      9     36      9
  DEL PEAK 39(21Q11.2) WILD-TYPE     55     38     72     43     80     22
D68V6, multiclass
        clus
vv       DEL PEAK 39(21Q11.2) MUTATED DEL PEAK 39(21Q11.2) WILD-TYPE
  CLUS_1                            9                             55
  CLUS_2                            8                             38
  CLUS_3                           18                             72
  CLUS_4                            9                             43
  CLUS_5                           36                             80
  CLUS_6                            9                             22
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(21Q11.2) MUTATED      125     64     27
  DEL PEAK 39(21Q11.2) WILD-TYPE    434    240    185
D68V7, multiclass
        clus
vv       DEL PEAK 39(21Q11.2) MUTATED DEL PEAK 39(21Q11.2) WILD-TYPE
  CLUS_1                          125                            434
  CLUS_2                           64                            240
  CLUS_3                           27                            185
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 39(21Q11.2) MUTATED       57     57      6     51     31     14
  DEL PEAK 39(21Q11.2) WILD-TYPE    232    106     84    239    152     46
D68V8, multiclass
        clus
vv       DEL PEAK 39(21Q11.2) MUTATED DEL PEAK 39(21Q11.2) WILD-TYPE
  CLUS_1                           57                            232
  CLUS_2                           57                            106
  CLUS_3                            6                             84
  CLUS_4                           51                            239
  CLUS_5                           31                            152
  CLUS_6                           14                             46
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(21Q11.2) MUTATED       74     28     48     62
  DEL PEAK 39(21Q11.2) WILD-TYPE    231    184    221    213
D68V9, multiclass
        clus
vv       DEL PEAK 39(21Q11.2) MUTATED DEL PEAK 39(21Q11.2) WILD-TYPE
  CLUS_1                           74                            231
  CLUS_2                           28                            184
  CLUS_3                           48                            221
  CLUS_4                           62                            213
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 39(21Q11.2) MUTATED       75     42     33     28     12     22
  DEL PEAK 39(21Q11.2) WILD-TYPE    219    110    212    112     84    112
D68V10, multiclass
        clus
vv       DEL PEAK 39(21Q11.2) MUTATED DEL PEAK 39(21Q11.2) WILD-TYPE
  CLUS_1                           75                            219
  CLUS_2                           42                            110
  CLUS_3                           33                            212
  CLUS_4                           28                            112
  CLUS_5                           12                             84
  CLUS_6                           22                            112
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 39(21Q11.2) MUTATED       47     28     15     13     26
  DEL PEAK 39(21Q11.2) WILD-TYPE    133    111     84     98    107
D68V11, multiclass
        clus
vv       DEL PEAK 39(21Q11.2) MUTATED DEL PEAK 39(21Q11.2) WILD-TYPE
  CLUS_1                           47                            133
  CLUS_2                           28                            111
  CLUS_3                           15                             84
  CLUS_4                           13                             98
  CLUS_5                           26                            107
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(21Q11.2) MUTATED       70     41     18
  DEL PEAK 39(21Q11.2) WILD-TYPE    235    206     92
D68V12, multiclass
        clus
vv       DEL PEAK 39(21Q11.2) MUTATED DEL PEAK 39(21Q11.2) WILD-TYPE
  CLUS_1                           70                            235
  CLUS_2                           41                            206
  CLUS_3                           18                             92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(69) Variable = DEL PEAK 40(22Q13.32) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 40(22Q13.32) MUTATED        6     18     64     41     47     29
  DEL PEAK 40(22Q13.32) WILD-TYPE     15     18     55     55     62     43
                                 vv
clus                              CLUS_7 CLUS_8
  DEL PEAK 40(22Q13.32) MUTATED       12     18
  DEL PEAK 40(22Q13.32) WILD-TYPE      8     22
D69V1, multiclass
        clus
vv       DEL PEAK 40(22Q13.32) MUTATED DEL PEAK 40(22Q13.32) WILD-TYPE
  CLUS_1                             6                              15
  CLUS_2                            18                              18
  CLUS_3                            64                              55
  CLUS_4                            41                              55
  CLUS_5                            47                              62
  CLUS_6                            29                              43
  CLUS_7                            12                               8
  CLUS_8                            18                              22
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 40(22Q13.32) MUTATED       62     68     46     37     22
  DEL PEAK 40(22Q13.32) WILD-TYPE     39     84     68     51     36
D69V2, multiclass
        clus
vv       DEL PEAK 40(22Q13.32) MUTATED DEL PEAK 40(22Q13.32) WILD-TYPE
  CLUS_1                            62                              39
  CLUS_2                            68                              84
  CLUS_3                            46                              68
  CLUS_4                            37                              51
  CLUS_5                            22                              36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 40(22Q13.32) MUTATED      147    144     60    122     19
  DEL PEAK 40(22Q13.32) WILD-TYPE    128    263     38    135     24
D69V3, multiclass
        clus
vv       DEL PEAK 40(22Q13.32) MUTATED DEL PEAK 40(22Q13.32) WILD-TYPE
  CLUS_1                           147                             128
  CLUS_2                           144                             263
  CLUS_3                            60                              38
  CLUS_4                           122                             135
  CLUS_5                            19                              24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 40(22Q13.32) MUTATED       92     53     69     49     63     16
  DEL PEAK 40(22Q13.32) WILD-TYPE     61     60    108     82     65     39
D69V4, multiclass
        clus
vv       DEL PEAK 40(22Q13.32) MUTATED DEL PEAK 40(22Q13.32) WILD-TYPE
  CLUS_1                            92                              61
  CLUS_2                            53                              60
  CLUS_3                            69                             108
  CLUS_4                            49                              82
  CLUS_5                            63                              65
  CLUS_6                            16                              39
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(22Q13.32) MUTATED       65     73     53
  DEL PEAK 40(22Q13.32) WILD-TYPE     83     61     64
D69V5, multiclass
        clus
vv       DEL PEAK 40(22Q13.32) MUTATED DEL PEAK 40(22Q13.32) WILD-TYPE
  CLUS_1                            65                              83
  CLUS_2                            73                              61
  CLUS_3                            53                              64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 40(22Q13.32) MUTATED       38     24     37     23     60      9
  DEL PEAK 40(22Q13.32) WILD-TYPE     26     22     53     29     56     22
D69V6, multiclass
        clus
vv       DEL PEAK 40(22Q13.32) MUTATED DEL PEAK 40(22Q13.32) WILD-TYPE
  CLUS_1                            38                              26
  CLUS_2                            24                              22
  CLUS_3                            37                              53
  CLUS_4                            23                              29
  CLUS_5                            60                              56
  CLUS_6                             9                              22
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(22Q13.32) MUTATED      284    126     81
  DEL PEAK 40(22Q13.32) WILD-TYPE    275    178    131
D69V7, multiclass
        clus
vv       DEL PEAK 40(22Q13.32) MUTATED DEL PEAK 40(22Q13.32) WILD-TYPE
  CLUS_1                           284                             275
  CLUS_2                           126                             178
  CLUS_3                            81                             131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 40(22Q13.32) MUTATED      140     89     33    134     77     18
  DEL PEAK 40(22Q13.32) WILD-TYPE    149     74     57    156    106     42
D69V8, multiclass
        clus
vv       DEL PEAK 40(22Q13.32) MUTATED DEL PEAK 40(22Q13.32) WILD-TYPE
  CLUS_1                           140                             149
  CLUS_2                            89                              74
  CLUS_3                            33                              57
  CLUS_4                           134                             156
  CLUS_5                            77                             106
  CLUS_6                            18                              42
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(22Q13.32) MUTATED      139     72    139    133
  DEL PEAK 40(22Q13.32) WILD-TYPE    166    140    130    142
D69V9, multiclass
        clus
vv       DEL PEAK 40(22Q13.32) MUTATED DEL PEAK 40(22Q13.32) WILD-TYPE
  CLUS_1                           139                             166
  CLUS_2                            72                             140
  CLUS_3                           139                             130
  CLUS_4                           133                             142
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 40(22Q13.32) MUTATED      163     68     90     68     38     56
  DEL PEAK 40(22Q13.32) WILD-TYPE    131     84    155     72     58     78
D69V10, multiclass
        clus
vv       DEL PEAK 40(22Q13.32) MUTATED DEL PEAK 40(22Q13.32) WILD-TYPE
  CLUS_1                           163                             131
  CLUS_2                            68                              84
  CLUS_3                            90                             155
  CLUS_4                            68                              72
  CLUS_5                            38                              58
  CLUS_6                            56                              78
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 40(22Q13.32) MUTATED      103     63     47     38     56
  DEL PEAK 40(22Q13.32) WILD-TYPE     77     76     52     73     77
D69V11, multiclass
        clus
vv       DEL PEAK 40(22Q13.32) MUTATED DEL PEAK 40(22Q13.32) WILD-TYPE
  CLUS_1                           103                              77
  CLUS_2                            63                              76
  CLUS_3                            47                              52
  CLUS_4                            38                              73
  CLUS_5                            56                              77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(22Q13.32) MUTATED      156    104     47
  DEL PEAK 40(22Q13.32) WILD-TYPE    149    143     63
D69V12, multiclass
        clus
vv       DEL PEAK 40(22Q13.32) MUTATED DEL PEAK 40(22Q13.32) WILD-TYPE
  CLUS_1                           156                             149
  CLUS_2                           104                             143
  CLUS_3                            47                              63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
