[1] "ofn"        "-oTCESC-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/CESC-TP/15095897/CESC-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/CESC-TP/15082576/transformed.cor.cli.txt"

nPatients in clinical file=307, in cluster file=295, common to both=295
[1]  63 295
[1] "AMP PEAK  1(1P31.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  1(1P31.3) MUTATED AMP PEAK  1(1P31.3) WILD-TYPE 
                           96                           199 
  AMP PEAK  1(1P31.3) MUTATED AMP PEAK  1(1P31.3) WILD-TYPE 
                           96                           199 
[1] "AMP PEAK  2(1Q21.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE 
                          158                           137 
  AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE 
                          158                           137 
[1] "AMP PEAK  3(1Q44) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE 
                        152                         143 
  AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE 
                        152                         143 
[1] "AMP PEAK  4(2P24.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  4(2P24.3) MUTATED AMP PEAK  4(2P24.3) WILD-TYPE 
                           79                           216 
  AMP PEAK  4(2P24.3) MUTATED AMP PEAK  4(2P24.3) WILD-TYPE 
                           79                           216 
[1] "AMP PEAK  5(2Q33.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  5(2Q33.1) MUTATED AMP PEAK  5(2Q33.1) WILD-TYPE 
                           41                           254 
  AMP PEAK  5(2Q33.1) MUTATED AMP PEAK  5(2Q33.1) WILD-TYPE 
                           41                           254 
[1] "AMP PEAK  6(3Q26.31) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  6(3Q26.31) MUTATED AMP PEAK  6(3Q26.31) WILD-TYPE 
                           227                             68 
  AMP PEAK  6(3Q26.31) MUTATED AMP PEAK  6(3Q26.31) WILD-TYPE 
                           227                             68 
[1] "AMP PEAK  7(3Q28) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  7(3Q28) MUTATED AMP PEAK  7(3Q28) WILD-TYPE 
                        224                          71 
  AMP PEAK  7(3Q28) MUTATED AMP PEAK  7(3Q28) WILD-TYPE 
                        224                          71 
[1] "AMP PEAK  8(4Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  8(4Q12) MUTATED AMP PEAK  8(4Q12) WILD-TYPE 
                         21                         274 
  AMP PEAK  8(4Q12) MUTATED AMP PEAK  8(4Q12) WILD-TYPE 
                         21                         274 
[1] "AMP PEAK  9(5P15.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE 
                           138                            157 
  AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE 
                           138                            157 
[1] "AMP PEAK 10(6P21.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 10(6P21.33) MUTATED AMP PEAK 10(6P21.33) WILD-TYPE 
                            82                            213 
  AMP PEAK 10(6P21.33) MUTATED AMP PEAK 10(6P21.33) WILD-TYPE 
                            82                            213 
[1] "AMP PEAK 11(7P11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE 
                           52                           243 
  AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE 
                           52                           243 
[1] "AMP PEAK 12(8Q24.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE 
                           127                            168 
  AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE 
                           127                            168 
[1] "AMP PEAK 13(9P24.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 13(9P24.1) MUTATED AMP PEAK 13(9P24.1) WILD-TYPE 
                           63                           232 
  AMP PEAK 13(9P24.1) MUTATED AMP PEAK 13(9P24.1) WILD-TYPE 
                           63                           232 
[1] "AMP PEAK 14(11P12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 14(11P12) MUTATED AMP PEAK 14(11P12) WILD-TYPE 
                          23                          272 
  AMP PEAK 14(11P12) MUTATED AMP PEAK 14(11P12) WILD-TYPE 
                          23                          272 
[1] "AMP PEAK 15(11Q13.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 15(11Q13.3) MUTATED AMP PEAK 15(11Q13.3) WILD-TYPE 
                            41                            254 
  AMP PEAK 15(11Q13.3) MUTATED AMP PEAK 15(11Q13.3) WILD-TYPE 
                            41                            254 
[1] "AMP PEAK 16(11Q22.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 16(11Q22.1) MUTATED AMP PEAK 16(11Q22.1) WILD-TYPE 
                            47                            248 
  AMP PEAK 16(11Q22.1) MUTATED AMP PEAK 16(11Q22.1) WILD-TYPE 
                            47                            248 
[1] "AMP PEAK 17(13Q22.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 17(13Q22.1) MUTATED AMP PEAK 17(13Q22.1) WILD-TYPE 
                            65                            230 
  AMP PEAK 17(13Q22.1) MUTATED AMP PEAK 17(13Q22.1) WILD-TYPE 
                            65                            230 
[1] "AMP PEAK 18(13Q34) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 18(13Q34) MUTATED AMP PEAK 18(13Q34) WILD-TYPE 
                          69                          226 
  AMP PEAK 18(13Q34) MUTATED AMP PEAK 18(13Q34) WILD-TYPE 
                          69                          226 
[1] "AMP PEAK 19(15Q26.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 19(15Q26.1) MUTATED AMP PEAK 19(15Q26.1) WILD-TYPE 
                            76                            219 
  AMP PEAK 19(15Q26.1) MUTATED AMP PEAK 19(15Q26.1) WILD-TYPE 
                            76                            219 
[1] "AMP PEAK 20(16P13.13) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 20(16P13.13) MUTATED AMP PEAK 20(16P13.13) WILD-TYPE 
                             65                             230 
  AMP PEAK 20(16P13.13) MUTATED AMP PEAK 20(16P13.13) WILD-TYPE 
                             65                             230 
[1] "AMP PEAK 21(17Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 21(17Q12) MUTATED AMP PEAK 21(17Q12) WILD-TYPE 
                          55                          240 
  AMP PEAK 21(17Q12) MUTATED AMP PEAK 21(17Q12) WILD-TYPE 
                          55                          240 
[1] "AMP PEAK 22(17Q25.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 22(17Q25.1) MUTATED AMP PEAK 22(17Q25.1) WILD-TYPE 
                            74                            221 
  AMP PEAK 22(17Q25.1) MUTATED AMP PEAK 22(17Q25.1) WILD-TYPE 
                            74                            221 
[1] "AMP PEAK 23(19P13.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 23(19P13.3) MUTATED AMP PEAK 23(19P13.3) WILD-TYPE 
                            39                            256 
  AMP PEAK 23(19P13.3) MUTATED AMP PEAK 23(19P13.3) WILD-TYPE 
                            39                            256 
[1] "AMP PEAK 24(19P13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 24(19P13.2) MUTATED AMP PEAK 24(19P13.2) WILD-TYPE 
                            43                            252 
  AMP PEAK 24(19P13.2) MUTATED AMP PEAK 24(19P13.2) WILD-TYPE 
                            43                            252 
[1] "AMP PEAK 25(19Q13.13) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 25(19Q13.13) MUTATED AMP PEAK 25(19Q13.13) WILD-TYPE 
                             93                             202 
  AMP PEAK 25(19Q13.13) MUTATED AMP PEAK 25(19Q13.13) WILD-TYPE 
                             93                             202 
[1] "AMP PEAK 26(20Q11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 26(20Q11.21) MUTATED AMP PEAK 26(20Q11.21) WILD-TYPE 
                            135                             160 
  AMP PEAK 26(20Q11.21) MUTATED AMP PEAK 26(20Q11.21) WILD-TYPE 
                            135                             160 
[1] "AMP PEAK 27(21Q22.13) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 27(21Q22.13) MUTATED AMP PEAK 27(21Q22.13) WILD-TYPE 
                             48                             247 
  AMP PEAK 27(21Q22.13) MUTATED AMP PEAK 27(21Q22.13) WILD-TYPE 
                             48                             247 
[1] "AMP PEAK 28(XQ28) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 28(XQ28) MUTATED AMP PEAK 28(XQ28) WILD-TYPE 
                         75                         220 
  AMP PEAK 28(XQ28) MUTATED AMP PEAK 28(XQ28) WILD-TYPE 
                         75                         220 
[1] "DEL PEAK  1(1P36.23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE 
                            40                            255 
  DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE 
                            40                            255 
[1] "DEL PEAK  2(1P13.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE 
                           34                           261 
  DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE 
                           34                           261 
[1] "DEL PEAK  3(2Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE 
                           65                           230 
  DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE 
                           65                           230 
[1] "DEL PEAK  4(2Q37.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(2Q37.1) MUTATED DEL PEAK  4(2Q37.1) WILD-TYPE 
                          129                           166 
  DEL PEAK  4(2Q37.1) MUTATED DEL PEAK  4(2Q37.1) WILD-TYPE 
                          129                           166 
[1] "DEL PEAK  5(3P14.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(3P14.2) MUTATED DEL PEAK  5(3P14.2) WILD-TYPE 
                          134                           161 
  DEL PEAK  5(3P14.2) MUTATED DEL PEAK  5(3P14.2) WILD-TYPE 
                          134                           161 
[1] "DEL PEAK  6(4Q21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(4Q21.3) MUTATED DEL PEAK  6(4Q21.3) WILD-TYPE 
                          103                           192 
  DEL PEAK  6(4Q21.3) MUTATED DEL PEAK  6(4Q21.3) WILD-TYPE 
                          103                           192 
[1] "DEL PEAK  7(4Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(4Q22.1) MUTATED DEL PEAK  7(4Q22.1) WILD-TYPE 
                          100                           195 
  DEL PEAK  7(4Q22.1) MUTATED DEL PEAK  7(4Q22.1) WILD-TYPE 
                          100                           195 
[1] "DEL PEAK  8(4Q35.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(4Q35.2) MUTATED DEL PEAK  8(4Q35.2) WILD-TYPE 
                          114                           181 
  DEL PEAK  8(4Q35.2) MUTATED DEL PEAK  8(4Q35.2) WILD-TYPE 
                          114                           181 
[1] "DEL PEAK  9(5Q12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(5Q12.1) MUTATED DEL PEAK  9(5Q12.1) WILD-TYPE 
                           76                           219 
  DEL PEAK  9(5Q12.1) MUTATED DEL PEAK  9(5Q12.1) WILD-TYPE 
                           76                           219 
[1] "DEL PEAK 10(5Q35.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(5Q35.2) MUTATED DEL PEAK 10(5Q35.2) WILD-TYPE 
                           71                           224 
  DEL PEAK 10(5Q35.2) MUTATED DEL PEAK 10(5Q35.2) WILD-TYPE 
                           71                           224 
[1] "DEL PEAK 11(6P24.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(6P24.2) MUTATED DEL PEAK 11(6P24.2) WILD-TYPE 
                           46                           249 
  DEL PEAK 11(6P24.2) MUTATED DEL PEAK 11(6P24.2) WILD-TYPE 
                           46                           249 
[1] "DEL PEAK 12(6Q26) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(6Q26) MUTATED DEL PEAK 12(6Q26) WILD-TYPE 
                        100                         195 
  DEL PEAK 12(6Q26) MUTATED DEL PEAK 12(6Q26) WILD-TYPE 
                        100                         195 
[1] "DEL PEAK 13(7Q34) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(7Q34) MUTATED DEL PEAK 13(7Q34) WILD-TYPE 
                         60                         235 
  DEL PEAK 13(7Q34) MUTATED DEL PEAK 13(7Q34) WILD-TYPE 
                         60                         235 
[1] "DEL PEAK 14(8P23.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE 
                          104                           191 
  DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE 
                          104                           191 
[1] "DEL PEAK 15(8P23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(8P23.1) MUTATED DEL PEAK 15(8P23.1) WILD-TYPE 
                           97                           198 
  DEL PEAK 15(8P23.1) MUTATED DEL PEAK 15(8P23.1) WILD-TYPE 
                           97                           198 
[1] "DEL PEAK 16(10Q23.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(10Q23.31) MUTATED DEL PEAK 16(10Q23.31) WILD-TYPE 
                             86                             209 
  DEL PEAK 16(10Q23.31) MUTATED DEL PEAK 16(10Q23.31) WILD-TYPE 
                             86                             209 
[1] "DEL PEAK 17(11P15.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(11P15.1) MUTATED DEL PEAK 17(11P15.1) WILD-TYPE 
                           102                            193 
  DEL PEAK 17(11P15.1) MUTATED DEL PEAK 17(11P15.1) WILD-TYPE 
                           102                            193 
[1] "DEL PEAK 18(11Q23.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(11Q23.3) MUTATED DEL PEAK 18(11Q23.3) WILD-TYPE 
                           162                            133 
  DEL PEAK 18(11Q23.3) MUTATED DEL PEAK 18(11Q23.3) WILD-TYPE 
                           162                            133 
[1] "DEL PEAK 19(11Q25) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 19(11Q25) MUTATED DEL PEAK 19(11Q25) WILD-TYPE 
                         160                          135 
  DEL PEAK 19(11Q25) MUTATED DEL PEAK 19(11Q25) WILD-TYPE 
                         160                          135 
[1] "DEL PEAK 20(13Q12.11) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 20(13Q12.11) MUTATED DEL PEAK 20(13Q12.11) WILD-TYPE 
                             98                             197 
  DEL PEAK 20(13Q12.11) MUTATED DEL PEAK 20(13Q12.11) WILD-TYPE 
                             98                             197 
[1] "DEL PEAK 21(13Q14.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 21(13Q14.2) MUTATED DEL PEAK 21(13Q14.2) WILD-TYPE 
                           118                            177 
  DEL PEAK 21(13Q14.2) MUTATED DEL PEAK 21(13Q14.2) WILD-TYPE 
                           118                            177 
[1] "DEL PEAK 22(14Q32.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 22(14Q32.31) MUTATED DEL PEAK 22(14Q32.31) WILD-TYPE 
                             50                             245 
  DEL PEAK 22(14Q32.31) MUTATED DEL PEAK 22(14Q32.31) WILD-TYPE 
                             50                             245 
[1] "DEL PEAK 23(15Q21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 23(15Q21.1) MUTATED DEL PEAK 23(15Q21.1) WILD-TYPE 
                            70                            225 
  DEL PEAK 23(15Q21.1) MUTATED DEL PEAK 23(15Q21.1) WILD-TYPE 
                            70                            225 
[1] "DEL PEAK 24(16Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 24(16Q11.2) MUTATED DEL PEAK 24(16Q11.2) WILD-TYPE 
                            53                            242 
  DEL PEAK 24(16Q11.2) MUTATED DEL PEAK 24(16Q11.2) WILD-TYPE 
                            53                            242 
[1] "DEL PEAK 25(16Q23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 25(16Q23.1) MUTATED DEL PEAK 25(16Q23.1) WILD-TYPE 
                            55                            240 
  DEL PEAK 25(16Q23.1) MUTATED DEL PEAK 25(16Q23.1) WILD-TYPE 
                            55                            240 
[1] "DEL PEAK 26(17P12) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 26(17P12) MUTATED DEL PEAK 26(17P12) WILD-TYPE 
                         109                          186 
  DEL PEAK 26(17P12) MUTATED DEL PEAK 26(17P12) WILD-TYPE 
                         109                          186 
[1] "DEL PEAK 27(17Q25.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 27(17Q25.3) MUTATED DEL PEAK 27(17Q25.3) WILD-TYPE 
                            51                            244 
  DEL PEAK 27(17Q25.3) MUTATED DEL PEAK 27(17Q25.3) WILD-TYPE 
                            51                            244 
[1] "DEL PEAK 28(18Q21.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 28(18Q21.2) MUTATED DEL PEAK 28(18Q21.2) WILD-TYPE 
                            82                            213 
  DEL PEAK 28(18Q21.2) MUTATED DEL PEAK 28(18Q21.2) WILD-TYPE 
                            82                            213 
[1] "DEL PEAK 29(19P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 29(19P13.3) MUTATED DEL PEAK 29(19P13.3) WILD-TYPE 
                           105                            190 
  DEL PEAK 29(19P13.3) MUTATED DEL PEAK 29(19P13.3) WILD-TYPE 
                           105                            190 
[1] "DEL PEAK 30(19Q13.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 30(19Q13.33) MUTATED DEL PEAK 30(19Q13.33) WILD-TYPE 
                             38                             257 
  DEL PEAK 30(19Q13.33) MUTATED DEL PEAK 30(19Q13.33) WILD-TYPE 
                             38                             257 
[1] "DEL PEAK 31(20P12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 31(20P12.1) MUTATED DEL PEAK 31(20P12.1) WILD-TYPE 
                            36                            259 
  DEL PEAK 31(20P12.1) MUTATED DEL PEAK 31(20P12.1) WILD-TYPE 
                            36                            259 
[1] "DEL PEAK 32(21Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 32(21Q11.2) MUTATED DEL PEAK 32(21Q11.2) WILD-TYPE 
                            58                            237 
  DEL PEAK 32(21Q11.2) MUTATED DEL PEAK 32(21Q11.2) WILD-TYPE 
                            58                            237 
[1] "DEL PEAK 33(22Q13.32) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 33(22Q13.32) MUTATED DEL PEAK 33(22Q13.32) WILD-TYPE 
                             88                             207 
  DEL PEAK 33(22Q13.32) MUTATED DEL PEAK 33(22Q13.32) WILD-TYPE 
                             88                             207 
[1] "DEL PEAK 34(XP11.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 34(XP11.3) MUTATED DEL PEAK 34(XP11.3) WILD-TYPE 
                           72                           223 
  DEL PEAK 34(XP11.3) MUTATED DEL PEAK 34(XP11.3) WILD-TYPE 
                           72                           223 
[1] "DEL PEAK 35(XQ21.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 35(XQ21.33) MUTATED DEL PEAK 35(XQ21.33) WILD-TYPE 
                            60                            235 
  DEL PEAK 35(XQ21.33) MUTATED DEL PEAK 35(XQ21.33) WILD-TYPE 
                            60                            235 
[1] "data2feature, selection=ALL"
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 10 rows and 295 columns.

Variable 1:'CN_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'RPPA_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'RPPA_CHIERARCHICAL':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MRNASEQ_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_MATURE_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "## **** detect survival parameters (defined in index such as ind_OS, ind_MFS, ind_RFS, ind_RFS, ind_BCR and ind_d2ssd) *** ##"
[1] "detected survival parameters using [ind_OS, overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_OS, curated_overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_TCGAOS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survivial parameters using [ind_MFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_RFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_BCR]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_Progression]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [index_additional_survival_time]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using condition: [is.null(surv.mat)&&(selection=='SURV')]"
[1] "survival parameters accumulated so far"
NULL
[1] "************ conversion from categorical data to rank data ********** "
[1] "****** SUMMARY ***** "
Output Data has 295 columns, 0 survival variables, and 10 non-survival variables.
[1] "* survival variables: "
NULL
[1] "* non-survival variables: "
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
CN_CNMF, nv=3, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=6, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=5, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=4, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=5, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE

Clustering(1) Variable = AMP PEAK  1(1P31.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P31.3) MUTATED       28     26     42
  AMP PEAK  1(1P31.3) WILD-TYPE    101     47     51
D1V1, multiclass
        clus
vv       AMP PEAK  1(1P31.3) MUTATED AMP PEAK  1(1P31.3) WILD-TYPE
  CLUS_1                          28                           101
  CLUS_2                          26                            47
  CLUS_3                          42                            51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1P31.3) MUTATED       18     21     23     17      1     16
  AMP PEAK  1(1P31.3) WILD-TYPE     53     33     34     42      8     29
D1V2, multiclass
        clus
vv       AMP PEAK  1(1P31.3) MUTATED AMP PEAK  1(1P31.3) WILD-TYPE
  CLUS_1                          18                            53
  CLUS_2                          21                            33
  CLUS_3                          23                            34
  CLUS_4                          17                            42
  CLUS_5                           1                             8
  CLUS_6                          16                            29
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P31.3) MUTATED       21     13     20
  AMP PEAK  1(1P31.3) WILD-TYPE     32     29     49
D1V3, multiclass
        clus
vv       AMP PEAK  1(1P31.3) MUTATED AMP PEAK  1(1P31.3) WILD-TYPE
  CLUS_1                          21                            32
  CLUS_2                          13                            29
  CLUS_3                          20                            49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1P31.3) MUTATED       12     12     15      8      7
  AMP PEAK  1(1P31.3) WILD-TYPE     20     35     30     15     10
D1V4, multiclass
        clus
vv       AMP PEAK  1(1P31.3) MUTATED AMP PEAK  1(1P31.3) WILD-TYPE
  CLUS_1                          12                            20
  CLUS_2                          12                            35
  CLUS_3                          15                            30
  CLUS_4                           8                            15
  CLUS_5                           7                            10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1P31.3) MUTATED       21     41     17     16
  AMP PEAK  1(1P31.3) WILD-TYPE     33     59     52     53
D1V5, multiclass
        clus
vv       AMP PEAK  1(1P31.3) MUTATED AMP PEAK  1(1P31.3) WILD-TYPE
  CLUS_1                          21                            33
  CLUS_2                          41                            59
  CLUS_3                          17                            52
  CLUS_4                          16                            53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P31.3) MUTATED       15     74      6
  AMP PEAK  1(1P31.3) WILD-TYPE     57    111     29
D1V6, multiclass
        clus
vv       AMP PEAK  1(1P31.3) MUTATED AMP PEAK  1(1P31.3) WILD-TYPE
  CLUS_1                          15                            57
  CLUS_2                          74                           111
  CLUS_3                           6                            29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P31.3) MUTATED       36     27     33
  AMP PEAK  1(1P31.3) WILD-TYPE     63     50     86
D1V7, multiclass
        clus
vv       AMP PEAK  1(1P31.3) MUTATED AMP PEAK  1(1P31.3) WILD-TYPE
  CLUS_1                          36                            63
  CLUS_2                          27                            50
  CLUS_3                          33                            86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1P31.3) MUTATED       12     36     32     10      6
  AMP PEAK  1(1P31.3) WILD-TYPE     48     59     40     15     37
D1V8, multiclass
        clus
vv       AMP PEAK  1(1P31.3) MUTATED AMP PEAK  1(1P31.3) WILD-TYPE
  CLUS_1                          12                            48
  CLUS_2                          36                            59
  CLUS_3                          32                            40
  CLUS_4                          10                            15
  CLUS_5                           6                            37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P31.3) MUTATED       41     26     21
  AMP PEAK  1(1P31.3) WILD-TYPE     84     51     59
D1V9, multiclass
        clus
vv       AMP PEAK  1(1P31.3) MUTATED AMP PEAK  1(1P31.3) WILD-TYPE
  CLUS_1                          41                            84
  CLUS_2                          26                            51
  CLUS_3                          21                            59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1P31.3) MUTATED       15     20      9     44
  AMP PEAK  1(1P31.3) WILD-TYPE     49     30     17     98
D1V10, multiclass
        clus
vv       AMP PEAK  1(1P31.3) MUTATED AMP PEAK  1(1P31.3) WILD-TYPE
  CLUS_1                          15                            49
  CLUS_2                          20                            30
  CLUS_3                           9                            17
  CLUS_4                          44                            98
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = AMP PEAK  2(1Q21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q21.3) MUTATED       49     42     67
  AMP PEAK  2(1Q21.3) WILD-TYPE     80     31     26
D2V1, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          49                            80
  CLUS_2                          42                            31
  CLUS_3                          67                            26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(1Q21.3) MUTATED       32     31     33     31      4     27
  AMP PEAK  2(1Q21.3) WILD-TYPE     39     23     24     28      5     18
D2V2, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          32                            39
  CLUS_2                          31                            23
  CLUS_3                          33                            24
  CLUS_4                          31                            28
  CLUS_5                           4                             5
  CLUS_6                          27                            18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q21.3) MUTATED       31     24     32
  AMP PEAK  2(1Q21.3) WILD-TYPE     22     18     37
D2V3, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          31                            22
  CLUS_2                          24                            18
  CLUS_3                          32                            37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(1Q21.3) MUTATED       14     21     27     13     12
  AMP PEAK  2(1Q21.3) WILD-TYPE     18     26     18     10      5
D2V4, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          14                            18
  CLUS_2                          21                            26
  CLUS_3                          27                            18
  CLUS_4                          13                            10
  CLUS_5                          12                             5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q21.3) MUTATED       29     64     32     31
  AMP PEAK  2(1Q21.3) WILD-TYPE     25     36     37     38
D2V5, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          29                            25
  CLUS_2                          64                            36
  CLUS_3                          32                            37
  CLUS_4                          31                            38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q21.3) MUTATED       29    111     16
  AMP PEAK  2(1Q21.3) WILD-TYPE     43     74     19
D2V6, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          29                            43
  CLUS_2                         111                            74
  CLUS_3                          16                            19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q21.3) MUTATED       53     42     63
  AMP PEAK  2(1Q21.3) WILD-TYPE     46     35     56
D2V7, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          53                            46
  CLUS_2                          42                            35
  CLUS_3                          63                            56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(1Q21.3) MUTATED       23     62     42     16     15
  AMP PEAK  2(1Q21.3) WILD-TYPE     37     33     30      9     28
D2V8, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          23                            37
  CLUS_2                          62                            33
  CLUS_3                          42                            30
  CLUS_4                          16                             9
  CLUS_5                          15                            28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q21.3) MUTATED       68     42     40
  AMP PEAK  2(1Q21.3) WILD-TYPE     57     35     40
D2V9, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          68                            57
  CLUS_2                          42                            35
  CLUS_3                          40                            40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q21.3) MUTATED       26     30     18     76
  AMP PEAK  2(1Q21.3) WILD-TYPE     38     20      8     66
D2V10, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          26                            38
  CLUS_2                          30                            20
  CLUS_3                          18                             8
  CLUS_4                          76                            66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = AMP PEAK  3(1Q44) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q44) MUTATED       46     41     65
  AMP PEAK  3(1Q44) WILD-TYPE     83     32     28
D3V1, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        46                          83
  CLUS_2                        41                          32
  CLUS_3                        65                          28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(1Q44) MUTATED       30     34     31     27      5     25
  AMP PEAK  3(1Q44) WILD-TYPE     41     20     26     32      4     20
D3V2, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        30                          41
  CLUS_2                        34                          20
  CLUS_3                        31                          26
  CLUS_4                        27                          32
  CLUS_5                         5                           4
  CLUS_6                        25                          20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q44) MUTATED       29     23     34
  AMP PEAK  3(1Q44) WILD-TYPE     24     19     35
D3V3, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        29                          24
  CLUS_2                        23                          19
  CLUS_3                        34                          35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(1Q44) MUTATED       13     23     26     12     12
  AMP PEAK  3(1Q44) WILD-TYPE     19     24     19     11      5
D3V4, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        13                          19
  CLUS_2                        23                          24
  CLUS_3                        26                          19
  CLUS_4                        12                          11
  CLUS_5                        12                           5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(1Q44) MUTATED       30     63     30     27
  AMP PEAK  3(1Q44) WILD-TYPE     24     37     39     42
D3V5, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        30                          24
  CLUS_2                        63                          37
  CLUS_3                        30                          39
  CLUS_4                        27                          42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q44) MUTATED       27    108     15
  AMP PEAK  3(1Q44) WILD-TYPE     45     77     20
D3V6, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        27                          45
  CLUS_2                       108                          77
  CLUS_3                        15                          20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q44) MUTATED       52     41     59
  AMP PEAK  3(1Q44) WILD-TYPE     47     36     60
D3V7, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        52                          47
  CLUS_2                        41                          36
  CLUS_3                        59                          60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(1Q44) MUTATED       21     58     43     15     15
  AMP PEAK  3(1Q44) WILD-TYPE     39     37     29     10     28
D3V8, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        21                          39
  CLUS_2                        58                          37
  CLUS_3                        43                          29
  CLUS_4                        15                          10
  CLUS_5                        15                          28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q44) MUTATED       62     44     38
  AMP PEAK  3(1Q44) WILD-TYPE     63     33     42
D3V9, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        62                          63
  CLUS_2                        44                          33
  CLUS_3                        38                          42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(1Q44) MUTATED       24     30     18     72
  AMP PEAK  3(1Q44) WILD-TYPE     40     20      8     70
D3V10, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        24                          40
  CLUS_2                        30                          20
  CLUS_3                        18                           8
  CLUS_4                        72                          70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = AMP PEAK  4(2P24.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(2P24.3) MUTATED       21     35     23
  AMP PEAK  4(2P24.3) WILD-TYPE    108     38     70
D4V1, multiclass
        clus
vv       AMP PEAK  4(2P24.3) MUTATED AMP PEAK  4(2P24.3) WILD-TYPE
  CLUS_1                          21                           108
  CLUS_2                          35                            38
  CLUS_3                          23                            70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(2P24.3) MUTATED       26     14      6     21      3      9
  AMP PEAK  4(2P24.3) WILD-TYPE     45     40     51     38      6     36
D4V2, multiclass
        clus
vv       AMP PEAK  4(2P24.3) MUTATED AMP PEAK  4(2P24.3) WILD-TYPE
  CLUS_1                          26                            45
  CLUS_2                          14                            40
  CLUS_3                           6                            51
  CLUS_4                          21                            38
  CLUS_5                           3                             6
  CLUS_6                           9                            36
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(2P24.3) MUTATED       12      9     23
  AMP PEAK  4(2P24.3) WILD-TYPE     41     33     46
D4V3, multiclass
        clus
vv       AMP PEAK  4(2P24.3) MUTATED AMP PEAK  4(2P24.3) WILD-TYPE
  CLUS_1                          12                            41
  CLUS_2                           9                            33
  CLUS_3                          23                            46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(2P24.3) MUTATED        4     14     11      6      9
  AMP PEAK  4(2P24.3) WILD-TYPE     28     33     34     17      8
D4V4, multiclass
        clus
vv       AMP PEAK  4(2P24.3) MUTATED AMP PEAK  4(2P24.3) WILD-TYPE
  CLUS_1                           4                            28
  CLUS_2                          14                            33
  CLUS_3                          11                            34
  CLUS_4                           6                            17
  CLUS_5                           9                             8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(2P24.3) MUTATED       17     19     23     20
  AMP PEAK  4(2P24.3) WILD-TYPE     37     81     46     49
D4V5, multiclass
        clus
vv       AMP PEAK  4(2P24.3) MUTATED AMP PEAK  4(2P24.3) WILD-TYPE
  CLUS_1                          17                            37
  CLUS_2                          19                            81
  CLUS_3                          23                            46
  CLUS_4                          20                            49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(2P24.3) MUTATED       25     41     13
  AMP PEAK  4(2P24.3) WILD-TYPE     47    144     22
D4V6, multiclass
        clus
vv       AMP PEAK  4(2P24.3) MUTATED AMP PEAK  4(2P24.3) WILD-TYPE
  CLUS_1                          25                            47
  CLUS_2                          41                           144
  CLUS_3                          13                            22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(2P24.3) MUTATED       30     13     36
  AMP PEAK  4(2P24.3) WILD-TYPE     69     64     83
D4V7, multiclass
        clus
vv       AMP PEAK  4(2P24.3) MUTATED AMP PEAK  4(2P24.3) WILD-TYPE
  CLUS_1                          30                            69
  CLUS_2                          13                            64
  CLUS_3                          36                            83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(2P24.3) MUTATED       21     26      6     13     13
  AMP PEAK  4(2P24.3) WILD-TYPE     39     69     66     12     30
D4V8, multiclass
        clus
vv       AMP PEAK  4(2P24.3) MUTATED AMP PEAK  4(2P24.3) WILD-TYPE
  CLUS_1                          21                            39
  CLUS_2                          26                            69
  CLUS_3                           6                            66
  CLUS_4                          13                            12
  CLUS_5                          13                            30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(2P24.3) MUTATED       42     18     17
  AMP PEAK  4(2P24.3) WILD-TYPE     83     59     63
D4V9, multiclass
        clus
vv       AMP PEAK  4(2P24.3) MUTATED AMP PEAK  4(2P24.3) WILD-TYPE
  CLUS_1                          42                            83
  CLUS_2                          18                            59
  CLUS_3                          17                            63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(2P24.3) MUTATED       22      9      4     42
  AMP PEAK  4(2P24.3) WILD-TYPE     42     41     22    100
D4V10, multiclass
        clus
vv       AMP PEAK  4(2P24.3) MUTATED AMP PEAK  4(2P24.3) WILD-TYPE
  CLUS_1                          22                            42
  CLUS_2                           9                            41
  CLUS_3                           4                            22
  CLUS_4                          42                           100
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = AMP PEAK  5(2Q33.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(2Q33.1) MUTATED        7     21     13
  AMP PEAK  5(2Q33.1) WILD-TYPE    122     52     80
D5V1, multiclass
        clus
vv       AMP PEAK  5(2Q33.1) MUTATED AMP PEAK  5(2Q33.1) WILD-TYPE
  CLUS_1                           7                           122
  CLUS_2                          21                            52
  CLUS_3                          13                            80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(2Q33.1) MUTATED       14      4      3     13      1      6
  AMP PEAK  5(2Q33.1) WILD-TYPE     57     50     54     46      8     39
D5V2, multiclass
        clus
vv       AMP PEAK  5(2Q33.1) MUTATED AMP PEAK  5(2Q33.1) WILD-TYPE
  CLUS_1                          14                            57
  CLUS_2                           4                            50
  CLUS_3                           3                            54
  CLUS_4                          13                            46
  CLUS_5                           1                             8
  CLUS_6                           6                            39
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(2Q33.1) MUTATED        7     10      8
  AMP PEAK  5(2Q33.1) WILD-TYPE     46     32     61
D5V3, multiclass
        clus
vv       AMP PEAK  5(2Q33.1) MUTATED AMP PEAK  5(2Q33.1) WILD-TYPE
  CLUS_1                           7                            46
  CLUS_2                          10                            32
  CLUS_3                           8                            61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(2Q33.1) MUTATED        3      5      8      5      4
  AMP PEAK  5(2Q33.1) WILD-TYPE     29     42     37     18     13
D5V4, multiclass
        clus
vv       AMP PEAK  5(2Q33.1) MUTATED AMP PEAK  5(2Q33.1) WILD-TYPE
  CLUS_1                           3                            29
  CLUS_2                           5                            42
  CLUS_3                           8                            37
  CLUS_4                           5                            18
  CLUS_5                           4                            13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(2Q33.1) MUTATED       12      3     10     15
  AMP PEAK  5(2Q33.1) WILD-TYPE     42     97     59     54
D5V5, multiclass
        clus
vv       AMP PEAK  5(2Q33.1) MUTATED AMP PEAK  5(2Q33.1) WILD-TYPE
  CLUS_1                          12                            42
  CLUS_2                           3                            97
  CLUS_3                          10                            59
  CLUS_4                          15                            54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(2Q33.1) MUTATED       13     19      8
  AMP PEAK  5(2Q33.1) WILD-TYPE     59    166     27
D5V6, multiclass
        clus
vv       AMP PEAK  5(2Q33.1) MUTATED AMP PEAK  5(2Q33.1) WILD-TYPE
  CLUS_1                          13                            59
  CLUS_2                          19                           166
  CLUS_3                           8                            27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(2Q33.1) MUTATED       17      7     17
  AMP PEAK  5(2Q33.1) WILD-TYPE     82     70    102
D5V7, multiclass
        clus
vv       AMP PEAK  5(2Q33.1) MUTATED AMP PEAK  5(2Q33.1) WILD-TYPE
  CLUS_1                          17                            82
  CLUS_2                           7                            70
  CLUS_3                          17                           102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(2Q33.1) MUTATED       12     10      4      3     12
  AMP PEAK  5(2Q33.1) WILD-TYPE     48     85     68     22     31
D5V8, multiclass
        clus
vv       AMP PEAK  5(2Q33.1) MUTATED AMP PEAK  5(2Q33.1) WILD-TYPE
  CLUS_1                          12                            48
  CLUS_2                          10                            85
  CLUS_3                           4                            68
  CLUS_4                           3                            22
  CLUS_5                          12                            31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(2Q33.1) MUTATED       22     11      8
  AMP PEAK  5(2Q33.1) WILD-TYPE    103     66     72
D5V9, multiclass
        clus
vv       AMP PEAK  5(2Q33.1) MUTATED AMP PEAK  5(2Q33.1) WILD-TYPE
  CLUS_1                          22                           103
  CLUS_2                          11                            66
  CLUS_3                           8                            72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(2Q33.1) MUTATED       10      7      2     22
  AMP PEAK  5(2Q33.1) WILD-TYPE     54     43     24    120
D5V10, multiclass
        clus
vv       AMP PEAK  5(2Q33.1) MUTATED AMP PEAK  5(2Q33.1) WILD-TYPE
  CLUS_1                          10                            54
  CLUS_2                           7                            43
  CLUS_3                           2                            24
  CLUS_4                          22                           120
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = AMP PEAK  6(3Q26.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(3Q26.31) MUTATED       77     57     93
  AMP PEAK  6(3Q26.31) WILD-TYPE     52     16      0
D6V1, multiclass
        clus
vv       AMP PEAK  6(3Q26.31) MUTATED AMP PEAK  6(3Q26.31) WILD-TYPE
  CLUS_1                           77                             52
  CLUS_2                           57                             16
  CLUS_3                           93                              0
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(3Q26.31) MUTATED       45     46     45     39      8     44
  AMP PEAK  6(3Q26.31) WILD-TYPE     26      8     12     20      1      1
D6V2, multiclass
        clus
vv       AMP PEAK  6(3Q26.31) MUTATED AMP PEAK  6(3Q26.31) WILD-TYPE
  CLUS_1                           45                             26
  CLUS_2                           46                              8
  CLUS_3                           45                             12
  CLUS_4                           39                             20
  CLUS_5                            8                              1
  CLUS_6                           44                              1
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(3Q26.31) MUTATED       43     34     53
  AMP PEAK  6(3Q26.31) WILD-TYPE     10      8     16
D6V3, multiclass
        clus
vv       AMP PEAK  6(3Q26.31) MUTATED AMP PEAK  6(3Q26.31) WILD-TYPE
  CLUS_1                           43                             10
  CLUS_2                           34                              8
  CLUS_3                           53                             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(3Q26.31) MUTATED       27     36     36     17     14
  AMP PEAK  6(3Q26.31) WILD-TYPE      5     11      9      6      3
D6V4, multiclass
        clus
vv       AMP PEAK  6(3Q26.31) MUTATED AMP PEAK  6(3Q26.31) WILD-TYPE
  CLUS_1                           27                              5
  CLUS_2                           36                             11
  CLUS_3                           36                              9
  CLUS_4                           17                              6
  CLUS_5                           14                              3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(3Q26.31) MUTATED       45     88     46     45
  AMP PEAK  6(3Q26.31) WILD-TYPE      9     12     23     24
D6V5, multiclass
        clus
vv       AMP PEAK  6(3Q26.31) MUTATED AMP PEAK  6(3Q26.31) WILD-TYPE
  CLUS_1                           45                              9
  CLUS_2                           88                             12
  CLUS_3                           46                             23
  CLUS_4                           45                             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(3Q26.31) MUTATED       43    160     21
  AMP PEAK  6(3Q26.31) WILD-TYPE     29     25     14
D6V6, multiclass
        clus
vv       AMP PEAK  6(3Q26.31) MUTATED AMP PEAK  6(3Q26.31) WILD-TYPE
  CLUS_1                           43                             29
  CLUS_2                          160                             25
  CLUS_3                           21                             14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(3Q26.31) MUTATED       73     64     90
  AMP PEAK  6(3Q26.31) WILD-TYPE     26     13     29
D6V7, multiclass
        clus
vv       AMP PEAK  6(3Q26.31) MUTATED AMP PEAK  6(3Q26.31) WILD-TYPE
  CLUS_1                           73                             26
  CLUS_2                           64                             13
  CLUS_3                           90                             29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(3Q26.31) MUTATED       34     81     65     20     27
  AMP PEAK  6(3Q26.31) WILD-TYPE     26     14      7      5     16
D6V8, multiclass
        clus
vv       AMP PEAK  6(3Q26.31) MUTATED AMP PEAK  6(3Q26.31) WILD-TYPE
  CLUS_1                           34                             26
  CLUS_2                           81                             14
  CLUS_3                           65                              7
  CLUS_4                           20                              5
  CLUS_5                           27                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(3Q26.31) MUTATED       87     63     66
  AMP PEAK  6(3Q26.31) WILD-TYPE     38     14     14
D6V9, multiclass
        clus
vv       AMP PEAK  6(3Q26.31) MUTATED AMP PEAK  6(3Q26.31) WILD-TYPE
  CLUS_1                           87                             38
  CLUS_2                           63                             14
  CLUS_3                           66                             14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(3Q26.31) MUTATED       38     45     24    109
  AMP PEAK  6(3Q26.31) WILD-TYPE     26      5      2     33
D6V10, multiclass
        clus
vv       AMP PEAK  6(3Q26.31) MUTATED AMP PEAK  6(3Q26.31) WILD-TYPE
  CLUS_1                           38                             26
  CLUS_2                           45                              5
  CLUS_3                           24                              2
  CLUS_4                          109                             33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = AMP PEAK  7(3Q28) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(3Q28) MUTATED       77     54     93
  AMP PEAK  7(3Q28) WILD-TYPE     52     19      0
D7V1, multiclass
        clus
vv       AMP PEAK  7(3Q28) MUTATED AMP PEAK  7(3Q28) WILD-TYPE
  CLUS_1                        77                          52
  CLUS_2                        54                          19
  CLUS_3                        93                           0
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(3Q28) MUTATED       43     45     44     39      9     44
  AMP PEAK  7(3Q28) WILD-TYPE     28      9     13     20      0      1
D7V2, multiclass
        clus
vv       AMP PEAK  7(3Q28) MUTATED AMP PEAK  7(3Q28) WILD-TYPE
  CLUS_1                        43                          28
  CLUS_2                        45                           9
  CLUS_3                        44                          13
  CLUS_4                        39                          20
  CLUS_5                         9                           0
  CLUS_6                        44                           1
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(3Q28) MUTATED       41     35     53
  AMP PEAK  7(3Q28) WILD-TYPE     12      7     16
D7V3, multiclass
        clus
vv       AMP PEAK  7(3Q28) MUTATED AMP PEAK  7(3Q28) WILD-TYPE
  CLUS_1                        41                          12
  CLUS_2                        35                           7
  CLUS_3                        53                          16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(3Q28) MUTATED       26     35     37     17     14
  AMP PEAK  7(3Q28) WILD-TYPE      6     12      8      6      3
D7V4, multiclass
        clus
vv       AMP PEAK  7(3Q28) MUTATED AMP PEAK  7(3Q28) WILD-TYPE
  CLUS_1                        26                           6
  CLUS_2                        35                          12
  CLUS_3                        37                           8
  CLUS_4                        17                           6
  CLUS_5                        14                           3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(3Q28) MUTATED       43     87     45     46
  AMP PEAK  7(3Q28) WILD-TYPE     11     13     24     23
D7V5, multiclass
        clus
vv       AMP PEAK  7(3Q28) MUTATED AMP PEAK  7(3Q28) WILD-TYPE
  CLUS_1                        43                          11
  CLUS_2                        87                          13
  CLUS_3                        45                          24
  CLUS_4                        46                          23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(3Q28) MUTATED       41    158     22
  AMP PEAK  7(3Q28) WILD-TYPE     31     27     13
D7V6, multiclass
        clus
vv       AMP PEAK  7(3Q28) MUTATED AMP PEAK  7(3Q28) WILD-TYPE
  CLUS_1                        41                          31
  CLUS_2                       158                          27
  CLUS_3                        22                          13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(3Q28) MUTATED       71     63     90
  AMP PEAK  7(3Q28) WILD-TYPE     28     14     29
D7V7, multiclass
        clus
vv       AMP PEAK  7(3Q28) MUTATED AMP PEAK  7(3Q28) WILD-TYPE
  CLUS_1                        71                          28
  CLUS_2                        63                          14
  CLUS_3                        90                          29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(3Q28) MUTATED       33     80     65     19     27
  AMP PEAK  7(3Q28) WILD-TYPE     27     15      7      6     16
D7V8, multiclass
        clus
vv       AMP PEAK  7(3Q28) MUTATED AMP PEAK  7(3Q28) WILD-TYPE
  CLUS_1                        33                          27
  CLUS_2                        80                          15
  CLUS_3                        65                           7
  CLUS_4                        19                           6
  CLUS_5                        27                          16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(3Q28) MUTATED       85     62     66
  AMP PEAK  7(3Q28) WILD-TYPE     40     15     14
D7V9, multiclass
        clus
vv       AMP PEAK  7(3Q28) MUTATED AMP PEAK  7(3Q28) WILD-TYPE
  CLUS_1                        85                          40
  CLUS_2                        62                          15
  CLUS_3                        66                          14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(3Q28) MUTATED       36     44     24    109
  AMP PEAK  7(3Q28) WILD-TYPE     28      6      2     33
D7V10, multiclass
        clus
vv       AMP PEAK  7(3Q28) MUTATED AMP PEAK  7(3Q28) WILD-TYPE
  CLUS_1                        36                          28
  CLUS_2                        44                           6
  CLUS_3                        24                           2
  CLUS_4                       109                          33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = AMP PEAK  8(4Q12) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(4Q12) MUTATED       10      4      7
  AMP PEAK  8(4Q12) WILD-TYPE    119     69     86
D8V1, multiclass
        clus
vv       AMP PEAK  8(4Q12) MUTATED AMP PEAK  8(4Q12) WILD-TYPE
  CLUS_1                        10                         119
  CLUS_2                         4                          69
  CLUS_3                         7                          86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(4Q12) MUTATED        5      3      2      3      2      6
  AMP PEAK  8(4Q12) WILD-TYPE     66     51     55     56      7     39
D8V2, multiclass
        clus
vv       AMP PEAK  8(4Q12) MUTATED AMP PEAK  8(4Q12) WILD-TYPE
  CLUS_1                         5                          66
  CLUS_2                         3                          51
  CLUS_3                         2                          55
  CLUS_4                         3                          56
  CLUS_5                         2                           7
  CLUS_6                         6                          39
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(4Q12) MUTATED        3      0     11
  AMP PEAK  8(4Q12) WILD-TYPE     50     42     58
D8V3, multiclass
        clus
vv       AMP PEAK  8(4Q12) MUTATED AMP PEAK  8(4Q12) WILD-TYPE
  CLUS_1                         3                          50
  CLUS_2                         0                          42
  CLUS_3                        11                          58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(4Q12) MUTATED        1      5      5      3      0
  AMP PEAK  8(4Q12) WILD-TYPE     31     42     40     20     17
D8V4, multiclass
        clus
vv       AMP PEAK  8(4Q12) MUTATED AMP PEAK  8(4Q12) WILD-TYPE
  CLUS_1                         1                          31
  CLUS_2                         5                          42
  CLUS_3                         5                          40
  CLUS_4                         3                          20
  CLUS_5                         0                          17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(4Q12) MUTATED        5      5      6      5
  AMP PEAK  8(4Q12) WILD-TYPE     49     95     63     64
D8V5, multiclass
        clus
vv       AMP PEAK  8(4Q12) MUTATED AMP PEAK  8(4Q12) WILD-TYPE
  CLUS_1                         5                          49
  CLUS_2                         5                          95
  CLUS_3                         6                          63
  CLUS_4                         5                          64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(4Q12) MUTATED        5     13      3
  AMP PEAK  8(4Q12) WILD-TYPE     67    172     32
D8V6, multiclass
        clus
vv       AMP PEAK  8(4Q12) MUTATED AMP PEAK  8(4Q12) WILD-TYPE
  CLUS_1                         5                          67
  CLUS_2                        13                         172
  CLUS_3                         3                          32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(4Q12) MUTATED        7      5      9
  AMP PEAK  8(4Q12) WILD-TYPE     92     72    110
D8V7, multiclass
        clus
vv       AMP PEAK  8(4Q12) MUTATED AMP PEAK  8(4Q12) WILD-TYPE
  CLUS_1                         7                          92
  CLUS_2                         5                          72
  CLUS_3                         9                         110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(4Q12) MUTATED        4      9      2      3      3
  AMP PEAK  8(4Q12) WILD-TYPE     56     86     70     22     40
D8V8, multiclass
        clus
vv       AMP PEAK  8(4Q12) MUTATED AMP PEAK  8(4Q12) WILD-TYPE
  CLUS_1                         4                          56
  CLUS_2                         9                          86
  CLUS_3                         2                          70
  CLUS_4                         3                          22
  CLUS_5                         3                          40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(4Q12) MUTATED       11      3      7
  AMP PEAK  8(4Q12) WILD-TYPE    114     74     73
D8V9, multiclass
        clus
vv       AMP PEAK  8(4Q12) MUTATED AMP PEAK  8(4Q12) WILD-TYPE
  CLUS_1                        11                         114
  CLUS_2                         3                          74
  CLUS_3                         7                          73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(4Q12) MUTATED        3      1      4     13
  AMP PEAK  8(4Q12) WILD-TYPE     61     49     22    129
D8V10, multiclass
        clus
vv       AMP PEAK  8(4Q12) MUTATED AMP PEAK  8(4Q12) WILD-TYPE
  CLUS_1                         3                          61
  CLUS_2                         1                          49
  CLUS_3                         4                          22
  CLUS_4                        13                         129
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = AMP PEAK  9(5P15.33) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(5P15.33) MUTATED       34     60     44
  AMP PEAK  9(5P15.33) WILD-TYPE     95     13     49
D9V1, multiclass
        clus
vv       AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                           34                             95
  CLUS_2                           60                             13
  CLUS_3                           44                             49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(5P15.33) MUTATED       24     27     27     39      5     16
  AMP PEAK  9(5P15.33) WILD-TYPE     47     27     30     20      4     29
D9V2, multiclass
        clus
vv       AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                           24                             47
  CLUS_2                           27                             27
  CLUS_3                           27                             30
  CLUS_4                           39                             20
  CLUS_5                            5                              4
  CLUS_6                           16                             29
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(5P15.33) MUTATED       24     25     27
  AMP PEAK  9(5P15.33) WILD-TYPE     29     17     42
D9V3, multiclass
        clus
vv       AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                           24                             29
  CLUS_2                           25                             17
  CLUS_3                           27                             42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(5P15.33) MUTATED       13     18     25     10     10
  AMP PEAK  9(5P15.33) WILD-TYPE     19     29     20     13      7
D9V4, multiclass
        clus
vv       AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                           13                             19
  CLUS_2                           18                             29
  CLUS_3                           25                             20
  CLUS_4                           10                             13
  CLUS_5                           10                              7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(5P15.33) MUTATED       21     49     23     43
  AMP PEAK  9(5P15.33) WILD-TYPE     33     51     46     26
D9V5, multiclass
        clus
vv       AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                           21                             33
  CLUS_2                           49                             51
  CLUS_3                           23                             46
  CLUS_4                           43                             26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(5P15.33) MUTATED       24     89     23
  AMP PEAK  9(5P15.33) WILD-TYPE     48     96     12
D9V6, multiclass
        clus
vv       AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                           24                             48
  CLUS_2                           89                             96
  CLUS_3                           23                             12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(5P15.33) MUTATED       41     28     69
  AMP PEAK  9(5P15.33) WILD-TYPE     58     49     50
D9V7, multiclass
        clus
vv       AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                           41                             58
  CLUS_2                           28                             49
  CLUS_3                           69                             50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(5P15.33) MUTATED       17     50     28     16     27
  AMP PEAK  9(5P15.33) WILD-TYPE     43     45     44      9     16
D9V8, multiclass
        clus
vv       AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                           17                             43
  CLUS_2                           50                             45
  CLUS_3                           28                             44
  CLUS_4                           16                              9
  CLUS_5                           27                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(5P15.33) MUTATED       63     29     39
  AMP PEAK  9(5P15.33) WILD-TYPE     62     48     41
D9V9, multiclass
        clus
vv       AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                           63                             62
  CLUS_2                           29                             48
  CLUS_3                           39                             41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(5P15.33) MUTATED       21     23      9     78
  AMP PEAK  9(5P15.33) WILD-TYPE     43     27     17     64
D9V10, multiclass
        clus
vv       AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                           21                             43
  CLUS_2                           23                             27
  CLUS_3                            9                             17
  CLUS_4                           78                             64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = AMP PEAK 10(6P21.33) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(6P21.33) MUTATED       26     34     22
  AMP PEAK 10(6P21.33) WILD-TYPE    103     39     71
D10V1, multiclass
        clus
vv       AMP PEAK 10(6P21.33) MUTATED AMP PEAK 10(6P21.33) WILD-TYPE
  CLUS_1                           26                            103
  CLUS_2                           34                             39
  CLUS_3                           22                             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(6P21.33) MUTATED       24     14     10     22      3      9
  AMP PEAK 10(6P21.33) WILD-TYPE     47     40     47     37      6     36
D10V2, multiclass
        clus
vv       AMP PEAK 10(6P21.33) MUTATED AMP PEAK 10(6P21.33) WILD-TYPE
  CLUS_1                           24                             47
  CLUS_2                           14                             40
  CLUS_3                           10                             47
  CLUS_4                           22                             37
  CLUS_5                            3                              6
  CLUS_6                            9                             36
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(6P21.33) MUTATED       17     11     17
  AMP PEAK 10(6P21.33) WILD-TYPE     36     31     52
D10V3, multiclass
        clus
vv       AMP PEAK 10(6P21.33) MUTATED AMP PEAK 10(6P21.33) WILD-TYPE
  CLUS_1                           17                             36
  CLUS_2                           11                             31
  CLUS_3                           17                             52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(6P21.33) MUTATED        9      9      9     10      8
  AMP PEAK 10(6P21.33) WILD-TYPE     23     38     36     13      9
D10V4, multiclass
        clus
vv       AMP PEAK 10(6P21.33) MUTATED AMP PEAK 10(6P21.33) WILD-TYPE
  CLUS_1                            9                             23
  CLUS_2                            9                             38
  CLUS_3                            9                             36
  CLUS_4                           10                             13
  CLUS_5                            8                              9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(6P21.33) MUTATED       16     18     21     27
  AMP PEAK 10(6P21.33) WILD-TYPE     38     82     48     42
D10V5, multiclass
        clus
vv       AMP PEAK 10(6P21.33) MUTATED AMP PEAK 10(6P21.33) WILD-TYPE
  CLUS_1                           16                             38
  CLUS_2                           18                             82
  CLUS_3                           21                             48
  CLUS_4                           27                             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(6P21.33) MUTATED       22     46     14
  AMP PEAK 10(6P21.33) WILD-TYPE     50    139     21
D10V6, multiclass
        clus
vv       AMP PEAK 10(6P21.33) MUTATED AMP PEAK 10(6P21.33) WILD-TYPE
  CLUS_1                           22                             50
  CLUS_2                           46                            139
  CLUS_3                           14                             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(6P21.33) MUTATED       30     19     33
  AMP PEAK 10(6P21.33) WILD-TYPE     69     58     86
D10V7, multiclass
        clus
vv       AMP PEAK 10(6P21.33) MUTATED AMP PEAK 10(6P21.33) WILD-TYPE
  CLUS_1                           30                             69
  CLUS_2                           19                             58
  CLUS_3                           33                             86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(6P21.33) MUTATED       17     21     15      8     21
  AMP PEAK 10(6P21.33) WILD-TYPE     43     74     57     17     22
D10V8, multiclass
        clus
vv       AMP PEAK 10(6P21.33) MUTATED AMP PEAK 10(6P21.33) WILD-TYPE
  CLUS_1                           17                             43
  CLUS_2                           21                             74
  CLUS_3                           15                             57
  CLUS_4                            8                             17
  CLUS_5                           21                             22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(6P21.33) MUTATED       36     17     25
  AMP PEAK 10(6P21.33) WILD-TYPE     89     60     55
D10V9, multiclass
        clus
vv       AMP PEAK 10(6P21.33) MUTATED AMP PEAK 10(6P21.33) WILD-TYPE
  CLUS_1                           36                             89
  CLUS_2                           17                             60
  CLUS_3                           25                             55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(6P21.33) MUTATED       18     11      9     40
  AMP PEAK 10(6P21.33) WILD-TYPE     46     39     17    102
D10V10, multiclass
        clus
vv       AMP PEAK 10(6P21.33) MUTATED AMP PEAK 10(6P21.33) WILD-TYPE
  CLUS_1                           18                             46
  CLUS_2                           11                             39
  CLUS_3                            9                             17
  CLUS_4                           40                            102
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = AMP PEAK 11(7P11.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(7P11.2) MUTATED       13     25     14
  AMP PEAK 11(7P11.2) WILD-TYPE    116     48     79
D11V1, multiclass
        clus
vv       AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE
  CLUS_1                          13                           116
  CLUS_2                          25                            48
  CLUS_3                          14                            79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(7P11.2) MUTATED        5     14     11     18      2      2
  AMP PEAK 11(7P11.2) WILD-TYPE     66     40     46     41      7     43
D11V2, multiclass
        clus
vv       AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE
  CLUS_1                           5                            66
  CLUS_2                          14                            40
  CLUS_3                          11                            46
  CLUS_4                          18                            41
  CLUS_5                           2                             7
  CLUS_6                           2                            43
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(7P11.2) MUTATED       13      6      8
  AMP PEAK 11(7P11.2) WILD-TYPE     40     36     61
D11V3, multiclass
        clus
vv       AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE
  CLUS_1                          13                            40
  CLUS_2                           6                            36
  CLUS_3                           8                            61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(7P11.2) MUTATED        5      4      7     10      1
  AMP PEAK 11(7P11.2) WILD-TYPE     27     43     38     13     16
D11V4, multiclass
        clus
vv       AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE
  CLUS_1                           5                            27
  CLUS_2                           4                            43
  CLUS_3                           7                            38
  CLUS_4                          10                            13
  CLUS_5                           1                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(7P11.2) MUTATED        7     17      7     21
  AMP PEAK 11(7P11.2) WILD-TYPE     47     83     62     48
D11V5, multiclass
        clus
vv       AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE
  CLUS_1                           7                            47
  CLUS_2                          17                            83
  CLUS_3                           7                            62
  CLUS_4                          21                            48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(7P11.2) MUTATED        7     36      9
  AMP PEAK 11(7P11.2) WILD-TYPE     65    149     26
D11V6, multiclass
        clus
vv       AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE
  CLUS_1                           7                            65
  CLUS_2                          36                           149
  CLUS_3                           9                            26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(7P11.2) MUTATED       12      6     34
  AMP PEAK 11(7P11.2) WILD-TYPE     87     71     85
D11V7, multiclass
        clus
vv       AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE
  CLUS_1                          12                            87
  CLUS_2                           6                            71
  CLUS_3                          34                            85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(7P11.2) MUTATED        6     19      9      6     12
  AMP PEAK 11(7P11.2) WILD-TYPE     54     76     63     19     31
D11V8, multiclass
        clus
vv       AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE
  CLUS_1                           6                            54
  CLUS_2                          19                            76
  CLUS_3                           9                            63
  CLUS_4                           6                            19
  CLUS_5                          12                            31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(7P11.2) MUTATED       22      7     20
  AMP PEAK 11(7P11.2) WILD-TYPE    103     70     60
D11V9, multiclass
        clus
vv       AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE
  CLUS_1                          22                           103
  CLUS_2                           7                            70
  CLUS_3                          20                            60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(7P11.2) MUTATED        6      4      5     34
  AMP PEAK 11(7P11.2) WILD-TYPE     58     46     21    108
D11V10, multiclass
        clus
vv       AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE
  CLUS_1                           6                            58
  CLUS_2                           4                            46
  CLUS_3                           5                            21
  CLUS_4                          34                           108
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = AMP PEAK 12(8Q24.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(8Q24.21) MUTATED       50     37     40
  AMP PEAK 12(8Q24.21) WILD-TYPE     79     36     53
D12V1, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                           50                             79
  CLUS_2                           37                             36
  CLUS_3                           40                             53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(8Q24.21) MUTATED       25     30     23     27      6     16
  AMP PEAK 12(8Q24.21) WILD-TYPE     46     24     34     32      3     29
D12V2, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                           25                             46
  CLUS_2                           30                             24
  CLUS_3                           23                             34
  CLUS_4                           27                             32
  CLUS_5                            6                              3
  CLUS_6                           16                             29
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(8Q24.21) MUTATED       20     19     36
  AMP PEAK 12(8Q24.21) WILD-TYPE     33     23     33
D12V3, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                           20                             33
  CLUS_2                           19                             23
  CLUS_3                           36                             33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(8Q24.21) MUTATED       10     23     24     13      5
  AMP PEAK 12(8Q24.21) WILD-TYPE     22     24     21     10     12
D12V4, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                           10                             22
  CLUS_2                           23                             24
  CLUS_3                           24                             21
  CLUS_4                           13                             10
  CLUS_5                            5                             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(8Q24.21) MUTATED       24     46     24     32
  AMP PEAK 12(8Q24.21) WILD-TYPE     30     54     45     37
D12V5, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                           24                             30
  CLUS_2                           46                             54
  CLUS_3                           24                             45
  CLUS_4                           32                             37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(8Q24.21) MUTATED       23     90     13
  AMP PEAK 12(8Q24.21) WILD-TYPE     49     95     22
D12V6, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                           23                             49
  CLUS_2                           90                             95
  CLUS_3                           13                             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(8Q24.21) MUTATED       40     27     60
  AMP PEAK 12(8Q24.21) WILD-TYPE     59     50     59
D12V7, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                           40                             59
  CLUS_2                           27                             50
  CLUS_3                           60                             59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(8Q24.21) MUTATED       21     50     29      7     20
  AMP PEAK 12(8Q24.21) WILD-TYPE     39     45     43     18     23
D12V8, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                           21                             39
  CLUS_2                           50                             45
  CLUS_3                           29                             43
  CLUS_4                            7                             18
  CLUS_5                           20                             23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(8Q24.21) MUTATED       61     23     38
  AMP PEAK 12(8Q24.21) WILD-TYPE     64     54     42
D12V9, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                           61                             64
  CLUS_2                           23                             54
  CLUS_3                           38                             42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(8Q24.21) MUTATED       17     16     15     74
  AMP PEAK 12(8Q24.21) WILD-TYPE     47     34     11     68
D12V10, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                           17                             47
  CLUS_2                           16                             34
  CLUS_3                           15                             11
  CLUS_4                           74                             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = AMP PEAK 13(9P24.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(9P24.1) MUTATED       24     20     19
  AMP PEAK 13(9P24.1) WILD-TYPE    105     53     74
D13V1, multiclass
        clus
vv       AMP PEAK 13(9P24.1) MUTATED AMP PEAK 13(9P24.1) WILD-TYPE
  CLUS_1                          24                           105
  CLUS_2                          20                            53
  CLUS_3                          19                            74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 13(9P24.1) MUTATED        8     13     16     16      2      8
  AMP PEAK 13(9P24.1) WILD-TYPE     63     41     41     43      7     37
D13V2, multiclass
        clus
vv       AMP PEAK 13(9P24.1) MUTATED AMP PEAK 13(9P24.1) WILD-TYPE
  CLUS_1                           8                            63
  CLUS_2                          13                            41
  CLUS_3                          16                            41
  CLUS_4                          16                            43
  CLUS_5                           2                             7
  CLUS_6                           8                            37
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(9P24.1) MUTATED        5      9     21
  AMP PEAK 13(9P24.1) WILD-TYPE     48     33     48
D13V3, multiclass
        clus
vv       AMP PEAK 13(9P24.1) MUTATED AMP PEAK 13(9P24.1) WILD-TYPE
  CLUS_1                           5                            48
  CLUS_2                           9                            33
  CLUS_3                          21                            48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(9P24.1) MUTATED        3     12     15      5      0
  AMP PEAK 13(9P24.1) WILD-TYPE     29     35     30     18     17
D13V4, multiclass
        clus
vv       AMP PEAK 13(9P24.1) MUTATED AMP PEAK 13(9P24.1) WILD-TYPE
  CLUS_1                           3                            29
  CLUS_2                          12                            35
  CLUS_3                          15                            30
  CLUS_4                           5                            18
  CLUS_5                           0                            17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(9P24.1) MUTATED       11     23     10     19
  AMP PEAK 13(9P24.1) WILD-TYPE     43     77     59     50
D13V5, multiclass
        clus
vv       AMP PEAK 13(9P24.1) MUTATED AMP PEAK 13(9P24.1) WILD-TYPE
  CLUS_1                          11                            43
  CLUS_2                          23                            77
  CLUS_3                          10                            59
  CLUS_4                          19                            50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(9P24.1) MUTATED        9     42     12
  AMP PEAK 13(9P24.1) WILD-TYPE     63    143     23
D13V6, multiclass
        clus
vv       AMP PEAK 13(9P24.1) MUTATED AMP PEAK 13(9P24.1) WILD-TYPE
  CLUS_1                           9                            63
  CLUS_2                          42                           143
  CLUS_3                          12                            23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(9P24.1) MUTATED       18     18     27
  AMP PEAK 13(9P24.1) WILD-TYPE     81     59     92
D13V7, multiclass
        clus
vv       AMP PEAK 13(9P24.1) MUTATED AMP PEAK 13(9P24.1) WILD-TYPE
  CLUS_1                          18                            81
  CLUS_2                          18                            59
  CLUS_3                          27                            92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(9P24.1) MUTATED        8     18     20      3     14
  AMP PEAK 13(9P24.1) WILD-TYPE     52     77     52     22     29
D13V8, multiclass
        clus
vv       AMP PEAK 13(9P24.1) MUTATED AMP PEAK 13(9P24.1) WILD-TYPE
  CLUS_1                           8                            52
  CLUS_2                          18                            77
  CLUS_3                          20                            52
  CLUS_4                           3                            22
  CLUS_5                          14                            29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(9P24.1) MUTATED       21     15     23
  AMP PEAK 13(9P24.1) WILD-TYPE    104     62     57
D13V9, multiclass
        clus
vv       AMP PEAK 13(9P24.1) MUTATED AMP PEAK 13(9P24.1) WILD-TYPE
  CLUS_1                          21                           104
  CLUS_2                          15                            62
  CLUS_3                          23                            57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(9P24.1) MUTATED        8     11      4     36
  AMP PEAK 13(9P24.1) WILD-TYPE     56     39     22    106
D13V10, multiclass
        clus
vv       AMP PEAK 13(9P24.1) MUTATED AMP PEAK 13(9P24.1) WILD-TYPE
  CLUS_1                           8                            56
  CLUS_2                          11                            39
  CLUS_3                           4                            22
  CLUS_4                          36                           106
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = AMP PEAK 14(11P12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(11P12) MUTATED        9      8      6
  AMP PEAK 14(11P12) WILD-TYPE    120     65     87
D14V1, multiclass
        clus
vv       AMP PEAK 14(11P12) MUTATED AMP PEAK 14(11P12) WILD-TYPE
  CLUS_1                          9                          120
  CLUS_2                          8                           65
  CLUS_3                          6                           87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 14(11P12) MUTATED        5      2      4      9      1      2
  AMP PEAK 14(11P12) WILD-TYPE     66     52     53     50      8     43
D14V2, multiclass
        clus
vv       AMP PEAK 14(11P12) MUTATED AMP PEAK 14(11P12) WILD-TYPE
  CLUS_1                          5                           66
  CLUS_2                          2                           52
  CLUS_3                          4                           53
  CLUS_4                          9                           50
  CLUS_5                          1                            8
  CLUS_6                          2                           43
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(11P12) MUTATED        3      4      4
  AMP PEAK 14(11P12) WILD-TYPE     50     38     65
D14V3, multiclass
        clus
vv       AMP PEAK 14(11P12) MUTATED AMP PEAK 14(11P12) WILD-TYPE
  CLUS_1                          3                           50
  CLUS_2                          4                           38
  CLUS_3                          4                           65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(11P12) MUTATED        2      3      4      2      0
  AMP PEAK 14(11P12) WILD-TYPE     30     44     41     21     17
D14V4, multiclass
        clus
vv       AMP PEAK 14(11P12) MUTATED AMP PEAK 14(11P12) WILD-TYPE
  CLUS_1                          2                           30
  CLUS_2                          3                           44
  CLUS_3                          4                           41
  CLUS_4                          2                           21
  CLUS_5                          0                           17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(11P12) MUTATED        4      6      4      9
  AMP PEAK 14(11P12) WILD-TYPE     50     94     65     60
D14V5, multiclass
        clus
vv       AMP PEAK 14(11P12) MUTATED AMP PEAK 14(11P12) WILD-TYPE
  CLUS_1                          4                           50
  CLUS_2                          6                           94
  CLUS_3                          4                           65
  CLUS_4                          9                           60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(11P12) MUTATED        5     13      5
  AMP PEAK 14(11P12) WILD-TYPE     67    172     30
D14V6, multiclass
        clus
vv       AMP PEAK 14(11P12) MUTATED AMP PEAK 14(11P12) WILD-TYPE
  CLUS_1                          5                           67
  CLUS_2                         13                          172
  CLUS_3                          5                           30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(11P12) MUTATED        7      4     12
  AMP PEAK 14(11P12) WILD-TYPE     92     73    107
D14V7, multiclass
        clus
vv       AMP PEAK 14(11P12) MUTATED AMP PEAK 14(11P12) WILD-TYPE
  CLUS_1                          7                           92
  CLUS_2                          4                           73
  CLUS_3                         12                          107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(11P12) MUTATED        3      5      4      3      8
  AMP PEAK 14(11P12) WILD-TYPE     57     90     68     22     35
D14V8, multiclass
        clus
vv       AMP PEAK 14(11P12) MUTATED AMP PEAK 14(11P12) WILD-TYPE
  CLUS_1                          3                           57
  CLUS_2                          5                           90
  CLUS_3                          4                           68
  CLUS_4                          3                           22
  CLUS_5                          8                           35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(11P12) MUTATED       12      4      6
  AMP PEAK 14(11P12) WILD-TYPE    113     73     74
D14V9, multiclass
        clus
vv       AMP PEAK 14(11P12) MUTATED AMP PEAK 14(11P12) WILD-TYPE
  CLUS_1                         12                          113
  CLUS_2                          4                           73
  CLUS_3                          6                           74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(11P12) MUTATED        3      5      2     12
  AMP PEAK 14(11P12) WILD-TYPE     61     45     24    130
D14V10, multiclass
        clus
vv       AMP PEAK 14(11P12) MUTATED AMP PEAK 14(11P12) WILD-TYPE
  CLUS_1                          3                           61
  CLUS_2                          5                           45
  CLUS_3                          2                           24
  CLUS_4                         12                          130
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = AMP PEAK 15(11Q13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(11Q13.3) MUTATED       11     21      9
  AMP PEAK 15(11Q13.3) WILD-TYPE    118     52     84
D15V1, multiclass
        clus
vv       AMP PEAK 15(11Q13.3) MUTATED AMP PEAK 15(11Q13.3) WILD-TYPE
  CLUS_1                           11                            118
  CLUS_2                           21                             52
  CLUS_3                            9                             84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 15(11Q13.3) MUTATED        7     11      4     15      0      4
  AMP PEAK 15(11Q13.3) WILD-TYPE     64     43     53     44      9     41
D15V2, multiclass
        clus
vv       AMP PEAK 15(11Q13.3) MUTATED AMP PEAK 15(11Q13.3) WILD-TYPE
  CLUS_1                            7                             64
  CLUS_2                           11                             43
  CLUS_3                            4                             53
  CLUS_4                           15                             44
  CLUS_5                            0                              9
  CLUS_6                            4                             41
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(11Q13.3) MUTATED       12      4      9
  AMP PEAK 15(11Q13.3) WILD-TYPE     41     38     60
D15V3, multiclass
        clus
vv       AMP PEAK 15(11Q13.3) MUTATED AMP PEAK 15(11Q13.3) WILD-TYPE
  CLUS_1                           12                             41
  CLUS_2                            4                             38
  CLUS_3                            9                             60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(11Q13.3) MUTATED        6      5      6      8      0
  AMP PEAK 15(11Q13.3) WILD-TYPE     26     42     39     15     17
D15V4, multiclass
        clus
vv       AMP PEAK 15(11Q13.3) MUTATED AMP PEAK 15(11Q13.3) WILD-TYPE
  CLUS_1                            6                             26
  CLUS_2                            5                             42
  CLUS_3                            6                             39
  CLUS_4                            8                             15
  CLUS_5                            0                             17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(11Q13.3) MUTATED        6     10      6     18
  AMP PEAK 15(11Q13.3) WILD-TYPE     48     90     63     51
D15V5, multiclass
        clus
vv       AMP PEAK 15(11Q13.3) MUTATED AMP PEAK 15(11Q13.3) WILD-TYPE
  CLUS_1                            6                             48
  CLUS_2                           10                             90
  CLUS_3                            6                             63
  CLUS_4                           18                             51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(11Q13.3) MUTATED        6     20     14
  AMP PEAK 15(11Q13.3) WILD-TYPE     66    165     21
D15V6, multiclass
        clus
vv       AMP PEAK 15(11Q13.3) MUTATED AMP PEAK 15(11Q13.3) WILD-TYPE
  CLUS_1                            6                             66
  CLUS_2                           20                            165
  CLUS_3                           14                             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(11Q13.3) MUTATED       10      6     25
  AMP PEAK 15(11Q13.3) WILD-TYPE     89     71     94
D15V7, multiclass
        clus
vv       AMP PEAK 15(11Q13.3) MUTATED AMP PEAK 15(11Q13.3) WILD-TYPE
  CLUS_1                           10                             89
  CLUS_2                            6                             71
  CLUS_3                           25                             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(11Q13.3) MUTATED        3     10      5      6     17
  AMP PEAK 15(11Q13.3) WILD-TYPE     57     85     67     19     26
D15V8, multiclass
        clus
vv       AMP PEAK 15(11Q13.3) MUTATED AMP PEAK 15(11Q13.3) WILD-TYPE
  CLUS_1                            3                             57
  CLUS_2                           10                             85
  CLUS_3                            5                             67
  CLUS_4                            6                             19
  CLUS_5                           17                             26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(11Q13.3) MUTATED       20      7     12
  AMP PEAK 15(11Q13.3) WILD-TYPE    105     70     68
D15V9, multiclass
        clus
vv       AMP PEAK 15(11Q13.3) MUTATED AMP PEAK 15(11Q13.3) WILD-TYPE
  CLUS_1                           20                            105
  CLUS_2                            7                             70
  CLUS_3                           12                             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(11Q13.3) MUTATED        5      6      5     23
  AMP PEAK 15(11Q13.3) WILD-TYPE     59     44     21    119
D15V10, multiclass
        clus
vv       AMP PEAK 15(11Q13.3) MUTATED AMP PEAK 15(11Q13.3) WILD-TYPE
  CLUS_1                            5                             59
  CLUS_2                            6                             44
  CLUS_3                            5                             21
  CLUS_4                           23                            119
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = AMP PEAK 16(11Q22.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(11Q22.1) MUTATED       15     23      9
  AMP PEAK 16(11Q22.1) WILD-TYPE    114     50     84
D16V1, multiclass
        clus
vv       AMP PEAK 16(11Q22.1) MUTATED AMP PEAK 16(11Q22.1) WILD-TYPE
  CLUS_1                           15                            114
  CLUS_2                           23                             50
  CLUS_3                            9                             84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 16(11Q22.1) MUTATED        5      5      9     23      1      4
  AMP PEAK 16(11Q22.1) WILD-TYPE     66     49     48     36      8     41
D16V2, multiclass
        clus
vv       AMP PEAK 16(11Q22.1) MUTATED AMP PEAK 16(11Q22.1) WILD-TYPE
  CLUS_1                            5                             66
  CLUS_2                            5                             49
  CLUS_3                            9                             48
  CLUS_4                           23                             36
  CLUS_5                            1                              8
  CLUS_6                            4                             41
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(11Q22.1) MUTATED       17      4      9
  AMP PEAK 16(11Q22.1) WILD-TYPE     36     38     60
D16V3, multiclass
        clus
vv       AMP PEAK 16(11Q22.1) MUTATED AMP PEAK 16(11Q22.1) WILD-TYPE
  CLUS_1                           17                             36
  CLUS_2                            4                             38
  CLUS_3                            9                             60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(11Q22.1) MUTATED        9      5      3     13      0
  AMP PEAK 16(11Q22.1) WILD-TYPE     23     42     42     10     17
D16V4, multiclass
        clus
vv       AMP PEAK 16(11Q22.1) MUTATED AMP PEAK 16(11Q22.1) WILD-TYPE
  CLUS_1                            9                             23
  CLUS_2                            5                             42
  CLUS_3                            3                             42
  CLUS_4                           13                             10
  CLUS_5                            0                             17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(11Q22.1) MUTATED        4      9      7     26
  AMP PEAK 16(11Q22.1) WILD-TYPE     50     91     62     43
D16V5, multiclass
        clus
vv       AMP PEAK 16(11Q22.1) MUTATED AMP PEAK 16(11Q22.1) WILD-TYPE
  CLUS_1                            4                             50
  CLUS_2                            9                             91
  CLUS_3                            7                             62
  CLUS_4                           26                             43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(11Q22.1) MUTATED        4     22     20
  AMP PEAK 16(11Q22.1) WILD-TYPE     68    163     15
D16V6, multiclass
        clus
vv       AMP PEAK 16(11Q22.1) MUTATED AMP PEAK 16(11Q22.1) WILD-TYPE
  CLUS_1                            4                             68
  CLUS_2                           22                            163
  CLUS_3                           20                             15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(11Q22.1) MUTATED        8      8     31
  AMP PEAK 16(11Q22.1) WILD-TYPE     91     69     88
D16V7, multiclass
        clus
vv       AMP PEAK 16(11Q22.1) MUTATED AMP PEAK 16(11Q22.1) WILD-TYPE
  CLUS_1                            8                             91
  CLUS_2                            8                             69
  CLUS_3                           31                             88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(11Q22.1) MUTATED        2      8     11      3     23
  AMP PEAK 16(11Q22.1) WILD-TYPE     58     87     61     22     20
D16V8, multiclass
        clus
vv       AMP PEAK 16(11Q22.1) MUTATED AMP PEAK 16(11Q22.1) WILD-TYPE
  CLUS_1                            2                             58
  CLUS_2                            8                             87
  CLUS_3                           11                             61
  CLUS_4                            3                             22
  CLUS_5                           23                             20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(11Q22.1) MUTATED       18      8     19
  AMP PEAK 16(11Q22.1) WILD-TYPE    107     69     61
D16V9, multiclass
        clus
vv       AMP PEAK 16(11Q22.1) MUTATED AMP PEAK 16(11Q22.1) WILD-TYPE
  CLUS_1                           18                            107
  CLUS_2                            8                             69
  CLUS_3                           19                             61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(11Q22.1) MUTATED        3      5      7     30
  AMP PEAK 16(11Q22.1) WILD-TYPE     61     45     19    112
D16V10, multiclass
        clus
vv       AMP PEAK 16(11Q22.1) MUTATED AMP PEAK 16(11Q22.1) WILD-TYPE
  CLUS_1                            3                             61
  CLUS_2                            5                             45
  CLUS_3                            7                             19
  CLUS_4                           30                            112
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = AMP PEAK 17(13Q22.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(13Q22.1) MUTATED       23     21     21
  AMP PEAK 17(13Q22.1) WILD-TYPE    106     52     72
D17V1, multiclass
        clus
vv       AMP PEAK 17(13Q22.1) MUTATED AMP PEAK 17(13Q22.1) WILD-TYPE
  CLUS_1                           23                            106
  CLUS_2                           21                             52
  CLUS_3                           21                             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 17(13Q22.1) MUTATED       14     18     10     19      1      3
  AMP PEAK 17(13Q22.1) WILD-TYPE     57     36     47     40      8     42
D17V2, multiclass
        clus
vv       AMP PEAK 17(13Q22.1) MUTATED AMP PEAK 17(13Q22.1) WILD-TYPE
  CLUS_1                           14                             57
  CLUS_2                           18                             36
  CLUS_3                           10                             47
  CLUS_4                           19                             40
  CLUS_5                            1                              8
  CLUS_6                            3                             42
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(13Q22.1) MUTATED       14      6     16
  AMP PEAK 17(13Q22.1) WILD-TYPE     39     36     53
D17V3, multiclass
        clus
vv       AMP PEAK 17(13Q22.1) MUTATED AMP PEAK 17(13Q22.1) WILD-TYPE
  CLUS_1                           14                             39
  CLUS_2                            6                             36
  CLUS_3                           16                             53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(13Q22.1) MUTATED        6     14      7      6      3
  AMP PEAK 17(13Q22.1) WILD-TYPE     26     33     38     17     14
D17V4, multiclass
        clus
vv       AMP PEAK 17(13Q22.1) MUTATED AMP PEAK 17(13Q22.1) WILD-TYPE
  CLUS_1                            6                             26
  CLUS_2                           14                             33
  CLUS_3                            7                             38
  CLUS_4                            6                             17
  CLUS_5                            3                             14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(13Q22.1) MUTATED        7     23     18     16
  AMP PEAK 17(13Q22.1) WILD-TYPE     47     77     51     53
D17V5, multiclass
        clus
vv       AMP PEAK 17(13Q22.1) MUTATED AMP PEAK 17(13Q22.1) WILD-TYPE
  CLUS_1                            7                             47
  CLUS_2                           23                             77
  CLUS_3                           18                             51
  CLUS_4                           16                             53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(13Q22.1) MUTATED       15     43      6
  AMP PEAK 17(13Q22.1) WILD-TYPE     57    142     29
D17V6, multiclass
        clus
vv       AMP PEAK 17(13Q22.1) MUTATED AMP PEAK 17(13Q22.1) WILD-TYPE
  CLUS_1                           15                             57
  CLUS_2                           43                            142
  CLUS_3                            6                             29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(13Q22.1) MUTATED       24     15     26
  AMP PEAK 17(13Q22.1) WILD-TYPE     75     62     93
D17V7, multiclass
        clus
vv       AMP PEAK 17(13Q22.1) MUTATED AMP PEAK 17(13Q22.1) WILD-TYPE
  CLUS_1                           24                             75
  CLUS_2                           15                             62
  CLUS_3                           26                             93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(13Q22.1) MUTATED       13     22     14      9      7
  AMP PEAK 17(13Q22.1) WILD-TYPE     47     73     58     16     36
D17V8, multiclass
        clus
vv       AMP PEAK 17(13Q22.1) MUTATED AMP PEAK 17(13Q22.1) WILD-TYPE
  CLUS_1                           13                             47
  CLUS_2                           22                             73
  CLUS_3                           14                             58
  CLUS_4                            9                             16
  CLUS_5                            7                             36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(13Q22.1) MUTATED       31     17     13
  AMP PEAK 17(13Q22.1) WILD-TYPE     94     60     67
D17V9, multiclass
        clus
vv       AMP PEAK 17(13Q22.1) MUTATED AMP PEAK 17(13Q22.1) WILD-TYPE
  CLUS_1                           31                             94
  CLUS_2                           17                             60
  CLUS_3                           13                             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(13Q22.1) MUTATED       14     12      3     32
  AMP PEAK 17(13Q22.1) WILD-TYPE     50     38     23    110
D17V10, multiclass
        clus
vv       AMP PEAK 17(13Q22.1) MUTATED AMP PEAK 17(13Q22.1) WILD-TYPE
  CLUS_1                           14                             50
  CLUS_2                           12                             38
  CLUS_3                            3                             23
  CLUS_4                           32                            110
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = AMP PEAK 18(13Q34) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(13Q34) MUTATED       23     25     21
  AMP PEAK 18(13Q34) WILD-TYPE    106     48     72
D18V1, multiclass
        clus
vv       AMP PEAK 18(13Q34) MUTATED AMP PEAK 18(13Q34) WILD-TYPE
  CLUS_1                         23                          106
  CLUS_2                         25                           48
  CLUS_3                         21                           72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 18(13Q34) MUTATED       15     16     11     19      3      5
  AMP PEAK 18(13Q34) WILD-TYPE     56     38     46     40      6     40
D18V2, multiclass
        clus
vv       AMP PEAK 18(13Q34) MUTATED AMP PEAK 18(13Q34) WILD-TYPE
  CLUS_1                         15                           56
  CLUS_2                         16                           38
  CLUS_3                         11                           46
  CLUS_4                         19                           40
  CLUS_5                          3                            6
  CLUS_6                          5                           40
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(13Q34) MUTATED       15      7     16
  AMP PEAK 18(13Q34) WILD-TYPE     38     35     53
D18V3, multiclass
        clus
vv       AMP PEAK 18(13Q34) MUTATED AMP PEAK 18(13Q34) WILD-TYPE
  CLUS_1                         15                           38
  CLUS_2                          7                           35
  CLUS_3                         16                           53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(13Q34) MUTATED        7     14      7      6      4
  AMP PEAK 18(13Q34) WILD-TYPE     25     33     38     17     13
D18V4, multiclass
        clus
vv       AMP PEAK 18(13Q34) MUTATED AMP PEAK 18(13Q34) WILD-TYPE
  CLUS_1                          7                           25
  CLUS_2                         14                           33
  CLUS_3                          7                           38
  CLUS_4                          6                           17
  CLUS_5                          4                           13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(13Q34) MUTATED       11     20     19     18
  AMP PEAK 18(13Q34) WILD-TYPE     43     80     50     51
D18V5, multiclass
        clus
vv       AMP PEAK 18(13Q34) MUTATED AMP PEAK 18(13Q34) WILD-TYPE
  CLUS_1                         11                           43
  CLUS_2                         20                           80
  CLUS_3                         19                           50
  CLUS_4                         18                           51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(13Q34) MUTATED       16     46      6
  AMP PEAK 18(13Q34) WILD-TYPE     56    139     29
D18V6, multiclass
        clus
vv       AMP PEAK 18(13Q34) MUTATED AMP PEAK 18(13Q34) WILD-TYPE
  CLUS_1                         16                           56
  CLUS_2                         46                          139
  CLUS_3                          6                           29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(13Q34) MUTATED       23     16     30
  AMP PEAK 18(13Q34) WILD-TYPE     76     61     89
D18V7, multiclass
        clus
vv       AMP PEAK 18(13Q34) MUTATED AMP PEAK 18(13Q34) WILD-TYPE
  CLUS_1                         23                           76
  CLUS_2                         16                           61
  CLUS_3                         30                           89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(13Q34) MUTATED       12     24     16      8      9
  AMP PEAK 18(13Q34) WILD-TYPE     48     71     56     17     34
D18V8, multiclass
        clus
vv       AMP PEAK 18(13Q34) MUTATED AMP PEAK 18(13Q34) WILD-TYPE
  CLUS_1                         12                           48
  CLUS_2                         24                           71
  CLUS_3                         16                           56
  CLUS_4                          8                           17
  CLUS_5                          9                           34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(13Q34) MUTATED       33     16     17
  AMP PEAK 18(13Q34) WILD-TYPE     92     61     63
D18V9, multiclass
        clus
vv       AMP PEAK 18(13Q34) MUTATED AMP PEAK 18(13Q34) WILD-TYPE
  CLUS_1                         33                           92
  CLUS_2                         16                           61
  CLUS_3                         17                           63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(13Q34) MUTATED       15     11      3     37
  AMP PEAK 18(13Q34) WILD-TYPE     49     39     23    105
D18V10, multiclass
        clus
vv       AMP PEAK 18(13Q34) MUTATED AMP PEAK 18(13Q34) WILD-TYPE
  CLUS_1                         15                           49
  CLUS_2                         11                           39
  CLUS_3                          3                           23
  CLUS_4                         37                          105
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = AMP PEAK 19(15Q26.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(15Q26.1) MUTATED       28     26     22
  AMP PEAK 19(15Q26.1) WILD-TYPE    101     47     71
D19V1, multiclass
        clus
vv       AMP PEAK 19(15Q26.1) MUTATED AMP PEAK 19(15Q26.1) WILD-TYPE
  CLUS_1                           28                            101
  CLUS_2                           26                             47
  CLUS_3                           22                             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 19(15Q26.1) MUTATED       20     11     18     17      3      7
  AMP PEAK 19(15Q26.1) WILD-TYPE     51     43     39     42      6     38
D19V2, multiclass
        clus
vv       AMP PEAK 19(15Q26.1) MUTATED AMP PEAK 19(15Q26.1) WILD-TYPE
  CLUS_1                           20                             51
  CLUS_2                           11                             43
  CLUS_3                           18                             39
  CLUS_4                           17                             42
  CLUS_5                            3                              6
  CLUS_6                            7                             38
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(15Q26.1) MUTATED       15      8     20
  AMP PEAK 19(15Q26.1) WILD-TYPE     38     34     49
D19V3, multiclass
        clus
vv       AMP PEAK 19(15Q26.1) MUTATED AMP PEAK 19(15Q26.1) WILD-TYPE
  CLUS_1                           15                             38
  CLUS_2                            8                             34
  CLUS_3                           20                             49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(15Q26.1) MUTATED        7     18     10      5      3
  AMP PEAK 19(15Q26.1) WILD-TYPE     25     29     35     18     14
D19V4, multiclass
        clus
vv       AMP PEAK 19(15Q26.1) MUTATED AMP PEAK 19(15Q26.1) WILD-TYPE
  CLUS_1                            7                             25
  CLUS_2                           18                             29
  CLUS_3                           10                             35
  CLUS_4                            5                             18
  CLUS_5                            3                             14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(15Q26.1) MUTATED       12     25     16     21
  AMP PEAK 19(15Q26.1) WILD-TYPE     42     75     53     48
D19V5, multiclass
        clus
vv       AMP PEAK 19(15Q26.1) MUTATED AMP PEAK 19(15Q26.1) WILD-TYPE
  CLUS_1                           12                             42
  CLUS_2                           25                             75
  CLUS_3                           16                             53
  CLUS_4                           21                             48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(15Q26.1) MUTATED       19     44     11
  AMP PEAK 19(15Q26.1) WILD-TYPE     53    141     24
D19V6, multiclass
        clus
vv       AMP PEAK 19(15Q26.1) MUTATED AMP PEAK 19(15Q26.1) WILD-TYPE
  CLUS_1                           19                             53
  CLUS_2                           44                            141
  CLUS_3                           11                             24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(15Q26.1) MUTATED       29     17     30
  AMP PEAK 19(15Q26.1) WILD-TYPE     70     60     89
D19V7, multiclass
        clus
vv       AMP PEAK 19(15Q26.1) MUTATED AMP PEAK 19(15Q26.1) WILD-TYPE
  CLUS_1                           29                             70
  CLUS_2                           17                             60
  CLUS_3                           30                             89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(15Q26.1) MUTATED       16     23     15      8     14
  AMP PEAK 19(15Q26.1) WILD-TYPE     44     72     57     17     29
D19V8, multiclass
        clus
vv       AMP PEAK 19(15Q26.1) MUTATED AMP PEAK 19(15Q26.1) WILD-TYPE
  CLUS_1                           16                             44
  CLUS_2                           23                             72
  CLUS_3                           15                             57
  CLUS_4                            8                             17
  CLUS_5                           14                             29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(15Q26.1) MUTATED       37     18     18
  AMP PEAK 19(15Q26.1) WILD-TYPE     88     59     62
D19V9, multiclass
        clus
vv       AMP PEAK 19(15Q26.1) MUTATED AMP PEAK 19(15Q26.1) WILD-TYPE
  CLUS_1                           37                             88
  CLUS_2                           18                             59
  CLUS_3                           18                             62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(15Q26.1) MUTATED       14     11     10     38
  AMP PEAK 19(15Q26.1) WILD-TYPE     50     39     16    104
D19V10, multiclass
        clus
vv       AMP PEAK 19(15Q26.1) MUTATED AMP PEAK 19(15Q26.1) WILD-TYPE
  CLUS_1                           14                             50
  CLUS_2                           11                             39
  CLUS_3                           10                             16
  CLUS_4                           38                            104
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = AMP PEAK 20(16P13.13) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(16P13.13) MUTATED       24     15     26
  AMP PEAK 20(16P13.13) WILD-TYPE    105     58     67
D20V1, multiclass
        clus
vv       AMP PEAK 20(16P13.13) MUTATED AMP PEAK 20(16P13.13) WILD-TYPE
  CLUS_1                            24                             105
  CLUS_2                            15                              58
  CLUS_3                            26                              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 20(16P13.13) MUTATED       20     13      8     12      2     10
  AMP PEAK 20(16P13.13) WILD-TYPE     51     41     49     47      7     35
D20V2, multiclass
        clus
vv       AMP PEAK 20(16P13.13) MUTATED AMP PEAK 20(16P13.13) WILD-TYPE
  CLUS_1                            20                              51
  CLUS_2                            13                              41
  CLUS_3                             8                              49
  CLUS_4                            12                              47
  CLUS_5                             2                               7
  CLUS_6                            10                              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(16P13.13) MUTATED       13      8     16
  AMP PEAK 20(16P13.13) WILD-TYPE     40     34     53
D20V3, multiclass
        clus
vv       AMP PEAK 20(16P13.13) MUTATED AMP PEAK 20(16P13.13) WILD-TYPE
  CLUS_1                            13                              40
  CLUS_2                             8                              34
  CLUS_3                            16                              53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(16P13.13) MUTATED        6     11     11      4      5
  AMP PEAK 20(16P13.13) WILD-TYPE     26     36     34     19     12
D20V4, multiclass
        clus
vv       AMP PEAK 20(16P13.13) MUTATED AMP PEAK 20(16P13.13) WILD-TYPE
  CLUS_1                             6                              26
  CLUS_2                            11                              36
  CLUS_3                            11                              34
  CLUS_4                             4                              19
  CLUS_5                             5                              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(16P13.13) MUTATED       17     20     16     11
  AMP PEAK 20(16P13.13) WILD-TYPE     37     80     53     58
D20V5, multiclass
        clus
vv       AMP PEAK 20(16P13.13) MUTATED AMP PEAK 20(16P13.13) WILD-TYPE
  CLUS_1                            17                              37
  CLUS_2                            20                              80
  CLUS_3                            16                              53
  CLUS_4                            11                              58
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(16P13.13) MUTATED       19     40      5
  AMP PEAK 20(16P13.13) WILD-TYPE     53    145     30
D20V6, multiclass
        clus
vv       AMP PEAK 20(16P13.13) MUTATED AMP PEAK 20(16P13.13) WILD-TYPE
  CLUS_1                            19                              53
  CLUS_2                            40                             145
  CLUS_3                             5                              30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(16P13.13) MUTATED       27     16     22
  AMP PEAK 20(16P13.13) WILD-TYPE     72     61     97
D20V7, multiclass
        clus
vv       AMP PEAK 20(16P13.13) MUTATED AMP PEAK 20(16P13.13) WILD-TYPE
  CLUS_1                            27                              72
  CLUS_2                            16                              61
  CLUS_3                            22                              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(16P13.13) MUTATED       15     18     14     10      8
  AMP PEAK 20(16P13.13) WILD-TYPE     45     77     58     15     35
D20V8, multiclass
        clus
vv       AMP PEAK 20(16P13.13) MUTATED AMP PEAK 20(16P13.13) WILD-TYPE
  CLUS_1                            15                              45
  CLUS_2                            18                              77
  CLUS_3                            14                              58
  CLUS_4                            10                              15
  CLUS_5                             8                              35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(16P13.13) MUTATED       28     18     14
  AMP PEAK 20(16P13.13) WILD-TYPE     97     59     66
D20V9, multiclass
        clus
vv       AMP PEAK 20(16P13.13) MUTATED AMP PEAK 20(16P13.13) WILD-TYPE
  CLUS_1                            28                              97
  CLUS_2                            18                              59
  CLUS_3                            14                              66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(16P13.13) MUTATED       18     11      5     26
  AMP PEAK 20(16P13.13) WILD-TYPE     46     39     21    116
D20V10, multiclass
        clus
vv       AMP PEAK 20(16P13.13) MUTATED AMP PEAK 20(16P13.13) WILD-TYPE
  CLUS_1                            18                              46
  CLUS_2                            11                              39
  CLUS_3                             5                              21
  CLUS_4                            26                             116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = AMP PEAK 21(17Q12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(17Q12) MUTATED       15     22     18
  AMP PEAK 21(17Q12) WILD-TYPE    114     51     75
D21V1, multiclass
        clus
vv       AMP PEAK 21(17Q12) MUTATED AMP PEAK 21(17Q12) WILD-TYPE
  CLUS_1                         15                          114
  CLUS_2                         22                           51
  CLUS_3                         18                           75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 21(17Q12) MUTATED       22      8      9      4      4      8
  AMP PEAK 21(17Q12) WILD-TYPE     49     46     48     55      5     37
D21V2, multiclass
        clus
vv       AMP PEAK 21(17Q12) MUTATED AMP PEAK 21(17Q12) WILD-TYPE
  CLUS_1                         22                           49
  CLUS_2                          8                           46
  CLUS_3                          9                           48
  CLUS_4                          4                           55
  CLUS_5                          4                            5
  CLUS_6                          8                           37
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(17Q12) MUTATED        9      8     16
  AMP PEAK 21(17Q12) WILD-TYPE     44     34     53
D21V3, multiclass
        clus
vv       AMP PEAK 21(17Q12) MUTATED AMP PEAK 21(17Q12) WILD-TYPE
  CLUS_1                          9                           44
  CLUS_2                          8                           34
  CLUS_3                         16                           53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(17Q12) MUTATED        2     11     12      2      6
  AMP PEAK 21(17Q12) WILD-TYPE     30     36     33     21     11
D21V4, multiclass
        clus
vv       AMP PEAK 21(17Q12) MUTATED AMP PEAK 21(17Q12) WILD-TYPE
  CLUS_1                          2                           30
  CLUS_2                         11                           36
  CLUS_3                         12                           33
  CLUS_4                          2                           21
  CLUS_5                          6                           11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(17Q12) MUTATED       10     13     23      8
  AMP PEAK 21(17Q12) WILD-TYPE     44     87     46     61
D21V5, multiclass
        clus
vv       AMP PEAK 21(17Q12) MUTATED AMP PEAK 21(17Q12) WILD-TYPE
  CLUS_1                         10                           44
  CLUS_2                         13                           87
  CLUS_3                         23                           46
  CLUS_4                          8                           61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(17Q12) MUTATED       23     28      3
  AMP PEAK 21(17Q12) WILD-TYPE     49    157     32
D21V6, multiclass
        clus
vv       AMP PEAK 21(17Q12) MUTATED AMP PEAK 21(17Q12) WILD-TYPE
  CLUS_1                         23                           49
  CLUS_2                         28                          157
  CLUS_3                          3                           32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(17Q12) MUTATED       25     16     14
  AMP PEAK 21(17Q12) WILD-TYPE     74     61    105
D21V7, multiclass
        clus
vv       AMP PEAK 21(17Q12) MUTATED AMP PEAK 21(17Q12) WILD-TYPE
  CLUS_1                         25                           74
  CLUS_2                         16                           61
  CLUS_3                         14                          105
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(17Q12) MUTATED       20     17      9      3      6
  AMP PEAK 21(17Q12) WILD-TYPE     40     78     63     22     37
D21V8, multiclass
        clus
vv       AMP PEAK 21(17Q12) MUTATED AMP PEAK 21(17Q12) WILD-TYPE
  CLUS_1                         20                           40
  CLUS_2                         17                           78
  CLUS_3                          9                           63
  CLUS_4                          3                           22
  CLUS_5                          6                           37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(17Q12) MUTATED       32     14      8
  AMP PEAK 21(17Q12) WILD-TYPE     93     63     72
D21V9, multiclass
        clus
vv       AMP PEAK 21(17Q12) MUTATED AMP PEAK 21(17Q12) WILD-TYPE
  CLUS_1                         32                           93
  CLUS_2                         14                           63
  CLUS_3                          8                           72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(17Q12) MUTATED       20      9      5     20
  AMP PEAK 21(17Q12) WILD-TYPE     44     41     21    122
D21V10, multiclass
        clus
vv       AMP PEAK 21(17Q12) MUTATED AMP PEAK 21(17Q12) WILD-TYPE
  CLUS_1                         20                           44
  CLUS_2                          9                           41
  CLUS_3                          5                           21
  CLUS_4                         20                          122
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = AMP PEAK 22(17Q25.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(17Q25.1) MUTATED       19     26     29
  AMP PEAK 22(17Q25.1) WILD-TYPE    110     47     64
D22V1, multiclass
        clus
vv       AMP PEAK 22(17Q25.1) MUTATED AMP PEAK 22(17Q25.1) WILD-TYPE
  CLUS_1                           19                            110
  CLUS_2                           26                             47
  CLUS_3                           29                             64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 22(17Q25.1) MUTATED       22     13      8     12      6     13
  AMP PEAK 22(17Q25.1) WILD-TYPE     49     41     49     47      3     32
D22V2, multiclass
        clus
vv       AMP PEAK 22(17Q25.1) MUTATED AMP PEAK 22(17Q25.1) WILD-TYPE
  CLUS_1                           22                             49
  CLUS_2                           13                             41
  CLUS_3                            8                             49
  CLUS_4                           12                             47
  CLUS_5                            6                              3
  CLUS_6                           13                             32
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(17Q25.1) MUTATED       10     14     25
  AMP PEAK 22(17Q25.1) WILD-TYPE     43     28     44
D22V3, multiclass
        clus
vv       AMP PEAK 22(17Q25.1) MUTATED AMP PEAK 22(17Q25.1) WILD-TYPE
  CLUS_1                           10                             43
  CLUS_2                           14                             28
  CLUS_3                           25                             44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 22(17Q25.1) MUTATED        4     15     16      6      8
  AMP PEAK 22(17Q25.1) WILD-TYPE     28     32     29     17      9
D22V4, multiclass
        clus
vv       AMP PEAK 22(17Q25.1) MUTATED AMP PEAK 22(17Q25.1) WILD-TYPE
  CLUS_1                            4                             28
  CLUS_2                           15                             32
  CLUS_3                           16                             29
  CLUS_4                            6                             17
  CLUS_5                            8                              9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(17Q25.1) MUTATED       21     16     20     15
  AMP PEAK 22(17Q25.1) WILD-TYPE     33     84     49     54
D22V5, multiclass
        clus
vv       AMP PEAK 22(17Q25.1) MUTATED AMP PEAK 22(17Q25.1) WILD-TYPE
  CLUS_1                           21                             33
  CLUS_2                           16                             84
  CLUS_3                           20                             49
  CLUS_4                           15                             54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(17Q25.1) MUTATED       20     46      6
  AMP PEAK 22(17Q25.1) WILD-TYPE     52    139     29
D22V6, multiclass
        clus
vv       AMP PEAK 22(17Q25.1) MUTATED AMP PEAK 22(17Q25.1) WILD-TYPE
  CLUS_1                           20                             52
  CLUS_2                           46                            139
  CLUS_3                            6                             29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(17Q25.1) MUTATED       30     21     23
  AMP PEAK 22(17Q25.1) WILD-TYPE     69     56     96
D22V7, multiclass
        clus
vv       AMP PEAK 22(17Q25.1) MUTATED AMP PEAK 22(17Q25.1) WILD-TYPE
  CLUS_1                           30                             69
  CLUS_2                           21                             56
  CLUS_3                           23                             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 22(17Q25.1) MUTATED       16     26     17      6      9
  AMP PEAK 22(17Q25.1) WILD-TYPE     44     69     55     19     34
D22V8, multiclass
        clus
vv       AMP PEAK 22(17Q25.1) MUTATED AMP PEAK 22(17Q25.1) WILD-TYPE
  CLUS_1                           16                             44
  CLUS_2                           26                             69
  CLUS_3                           17                             55
  CLUS_4                            6                             19
  CLUS_5                            9                             34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(17Q25.1) MUTATED       35     22     15
  AMP PEAK 22(17Q25.1) WILD-TYPE     90     55     65
D22V9, multiclass
        clus
vv       AMP PEAK 22(17Q25.1) MUTATED AMP PEAK 22(17Q25.1) WILD-TYPE
  CLUS_1                           35                             90
  CLUS_2                           22                             55
  CLUS_3                           15                             65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(17Q25.1) MUTATED       17     15      7     33
  AMP PEAK 22(17Q25.1) WILD-TYPE     47     35     19    109
D22V10, multiclass
        clus
vv       AMP PEAK 22(17Q25.1) MUTATED AMP PEAK 22(17Q25.1) WILD-TYPE
  CLUS_1                           17                             47
  CLUS_2                           15                             35
  CLUS_3                            7                             19
  CLUS_4                           33                            109
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = AMP PEAK 23(19P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(19P13.3) MUTATED       16      7     16
  AMP PEAK 23(19P13.3) WILD-TYPE    113     66     77
D23V1, multiclass
        clus
vv       AMP PEAK 23(19P13.3) MUTATED AMP PEAK 23(19P13.3) WILD-TYPE
  CLUS_1                           16                            113
  CLUS_2                            7                             66
  CLUS_3                           16                             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 23(19P13.3) MUTATED        5     10      9      3      1     11
  AMP PEAK 23(19P13.3) WILD-TYPE     66     44     48     56      8     34
D23V2, multiclass
        clus
vv       AMP PEAK 23(19P13.3) MUTATED AMP PEAK 23(19P13.3) WILD-TYPE
  CLUS_1                            5                             66
  CLUS_2                           10                             44
  CLUS_3                            9                             48
  CLUS_4                            3                             56
  CLUS_5                            1                              8
  CLUS_6                           11                             34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(19P13.3) MUTATED        3      6     13
  AMP PEAK 23(19P13.3) WILD-TYPE     50     36     56
D23V3, multiclass
        clus
vv       AMP PEAK 23(19P13.3) MUTATED AMP PEAK 23(19P13.3) WILD-TYPE
  CLUS_1                            3                             50
  CLUS_2                            6                             36
  CLUS_3                           13                             56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 23(19P13.3) MUTATED        2      8      7      2      3
  AMP PEAK 23(19P13.3) WILD-TYPE     30     39     38     21     14
D23V4, multiclass
        clus
vv       AMP PEAK 23(19P13.3) MUTATED AMP PEAK 23(19P13.3) WILD-TYPE
  CLUS_1                            2                             30
  CLUS_2                            8                             39
  CLUS_3                            7                             38
  CLUS_4                            2                             21
  CLUS_5                            3                             14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(19P13.3) MUTATED       10     17      6      6
  AMP PEAK 23(19P13.3) WILD-TYPE     44     83     63     63
D23V5, multiclass
        clus
vv       AMP PEAK 23(19P13.3) MUTATED AMP PEAK 23(19P13.3) WILD-TYPE
  CLUS_1                           10                             44
  CLUS_2                           17                             83
  CLUS_3                            6                             63
  CLUS_4                            6                             63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(19P13.3) MUTATED        5     34      0
  AMP PEAK 23(19P13.3) WILD-TYPE     67    151     35
D23V6, multiclass
        clus
vv       AMP PEAK 23(19P13.3) MUTATED AMP PEAK 23(19P13.3) WILD-TYPE
  CLUS_1                            5                             67
  CLUS_2                           34                            151
  CLUS_3                            0                             35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(19P13.3) MUTATED       11     13     15
  AMP PEAK 23(19P13.3) WILD-TYPE     88     64    104
D23V7, multiclass
        clus
vv       AMP PEAK 23(19P13.3) MUTATED AMP PEAK 23(19P13.3) WILD-TYPE
  CLUS_1                           11                             88
  CLUS_2                           13                             64
  CLUS_3                           15                            104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 23(19P13.3) MUTATED        5     12     18      1      3
  AMP PEAK 23(19P13.3) WILD-TYPE     55     83     54     24     40
D23V8, multiclass
        clus
vv       AMP PEAK 23(19P13.3) MUTATED AMP PEAK 23(19P13.3) WILD-TYPE
  CLUS_1                            5                             55
  CLUS_2                           12                             83
  CLUS_3                           18                             54
  CLUS_4                            1                             24
  CLUS_5                            3                             40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(19P13.3) MUTATED       16     13      8
  AMP PEAK 23(19P13.3) WILD-TYPE    109     64     72
D23V9, multiclass
        clus
vv       AMP PEAK 23(19P13.3) MUTATED AMP PEAK 23(19P13.3) WILD-TYPE
  CLUS_1                           16                            109
  CLUS_2                           13                             64
  CLUS_3                            8                             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(19P13.3) MUTATED        5     11      4     17
  AMP PEAK 23(19P13.3) WILD-TYPE     59     39     22    125
D23V10, multiclass
        clus
vv       AMP PEAK 23(19P13.3) MUTATED AMP PEAK 23(19P13.3) WILD-TYPE
  CLUS_1                            5                             59
  CLUS_2                           11                             39
  CLUS_3                            4                             22
  CLUS_4                           17                            125
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = AMP PEAK 24(19P13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(19P13.2) MUTATED       19      9     15
  AMP PEAK 24(19P13.2) WILD-TYPE    110     64     78
D24V1, multiclass
        clus
vv       AMP PEAK 24(19P13.2) MUTATED AMP PEAK 24(19P13.2) WILD-TYPE
  CLUS_1                           19                            110
  CLUS_2                            9                             64
  CLUS_3                           15                             78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 24(19P13.2) MUTATED        5      6     11     10      2      9
  AMP PEAK 24(19P13.2) WILD-TYPE     66     48     46     49      7     36
D24V2, multiclass
        clus
vv       AMP PEAK 24(19P13.2) MUTATED AMP PEAK 24(19P13.2) WILD-TYPE
  CLUS_1                            5                             66
  CLUS_2                            6                             48
  CLUS_3                           11                             46
  CLUS_4                           10                             49
  CLUS_5                            2                              7
  CLUS_6                            9                             36
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(19P13.2) MUTATED        4      7     13
  AMP PEAK 24(19P13.2) WILD-TYPE     49     35     56
D24V3, multiclass
        clus
vv       AMP PEAK 24(19P13.2) MUTATED AMP PEAK 24(19P13.2) WILD-TYPE
  CLUS_1                            4                             49
  CLUS_2                            7                             35
  CLUS_3                           13                             56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 24(19P13.2) MUTATED        3     10      5      4      2
  AMP PEAK 24(19P13.2) WILD-TYPE     29     37     40     19     15
D24V4, multiclass
        clus
vv       AMP PEAK 24(19P13.2) MUTATED AMP PEAK 24(19P13.2) WILD-TYPE
  CLUS_1                            3                             29
  CLUS_2                           10                             37
  CLUS_3                            5                             40
  CLUS_4                            4                             19
  CLUS_5                            2                             15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(19P13.2) MUTATED        8     17      7     11
  AMP PEAK 24(19P13.2) WILD-TYPE     46     83     62     58
D24V5, multiclass
        clus
vv       AMP PEAK 24(19P13.2) MUTATED AMP PEAK 24(19P13.2) WILD-TYPE
  CLUS_1                            8                             46
  CLUS_2                           17                             83
  CLUS_3                            7                             62
  CLUS_4                           11                             58
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(19P13.2) MUTATED        5     33      5
  AMP PEAK 24(19P13.2) WILD-TYPE     67    152     30
D24V6, multiclass
        clus
vv       AMP PEAK 24(19P13.2) MUTATED AMP PEAK 24(19P13.2) WILD-TYPE
  CLUS_1                            5                             67
  CLUS_2                           33                            152
  CLUS_3                            5                             30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(19P13.2) MUTATED       13     10     20
  AMP PEAK 24(19P13.2) WILD-TYPE     86     67     99
D24V7, multiclass
        clus
vv       AMP PEAK 24(19P13.2) MUTATED AMP PEAK 24(19P13.2) WILD-TYPE
  CLUS_1                           13                             86
  CLUS_2                           10                             67
  CLUS_3                           20                             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 24(19P13.2) MUTATED        5     16     16      1      5
  AMP PEAK 24(19P13.2) WILD-TYPE     55     79     56     24     38
D24V8, multiclass
        clus
vv       AMP PEAK 24(19P13.2) MUTATED AMP PEAK 24(19P13.2) WILD-TYPE
  CLUS_1                            5                             55
  CLUS_2                           16                             79
  CLUS_3                           16                             56
  CLUS_4                            1                             24
  CLUS_5                            5                             38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(19P13.2) MUTATED       18     11     10
  AMP PEAK 24(19P13.2) WILD-TYPE    107     66     70
D24V9, multiclass
        clus
vv       AMP PEAK 24(19P13.2) MUTATED AMP PEAK 24(19P13.2) WILD-TYPE
  CLUS_1                           18                            107
  CLUS_2                           11                             66
  CLUS_3                           10                             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(19P13.2) MUTATED        5     10      4     20
  AMP PEAK 24(19P13.2) WILD-TYPE     59     40     22    122
D24V10, multiclass
        clus
vv       AMP PEAK 24(19P13.2) MUTATED AMP PEAK 24(19P13.2) WILD-TYPE
  CLUS_1                            5                             59
  CLUS_2                           10                             40
  CLUS_3                            4                             22
  CLUS_4                           20                            122
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = AMP PEAK 25(19Q13.13) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(19Q13.13) MUTATED       21     46     26
  AMP PEAK 25(19Q13.13) WILD-TYPE    108     27     67
D25V1, multiclass
        clus
vv       AMP PEAK 25(19Q13.13) MUTATED AMP PEAK 25(19Q13.13) WILD-TYPE
  CLUS_1                            21                             108
  CLUS_2                            46                              27
  CLUS_3                            26                              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 25(19Q13.13) MUTATED       20     13     18     26      4     12
  AMP PEAK 25(19Q13.13) WILD-TYPE     51     41     39     33      5     33
D25V2, multiclass
        clus
vv       AMP PEAK 25(19Q13.13) MUTATED AMP PEAK 25(19Q13.13) WILD-TYPE
  CLUS_1                            20                              51
  CLUS_2                            13                              41
  CLUS_3                            18                              39
  CLUS_4                            26                              33
  CLUS_5                             4                               5
  CLUS_6                            12                              33
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(19Q13.13) MUTATED       18     14     25
  AMP PEAK 25(19Q13.13) WILD-TYPE     35     28     44
D25V3, multiclass
        clus
vv       AMP PEAK 25(19Q13.13) MUTATED AMP PEAK 25(19Q13.13) WILD-TYPE
  CLUS_1                            18                              35
  CLUS_2                            14                              28
  CLUS_3                            25                              44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 25(19Q13.13) MUTATED        9     15     14      9     10
  AMP PEAK 25(19Q13.13) WILD-TYPE     23     32     31     14      7
D25V4, multiclass
        clus
vv       AMP PEAK 25(19Q13.13) MUTATED AMP PEAK 25(19Q13.13) WILD-TYPE
  CLUS_1                             9                              23
  CLUS_2                            15                              32
  CLUS_3                            14                              31
  CLUS_4                             9                              14
  CLUS_5                            10                               7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(19Q13.13) MUTATED       20     28     18     25
  AMP PEAK 25(19Q13.13) WILD-TYPE     34     72     51     44
D25V5, multiclass
        clus
vv       AMP PEAK 25(19Q13.13) MUTATED AMP PEAK 25(19Q13.13) WILD-TYPE
  CLUS_1                            20                              34
  CLUS_2                            28                              72
  CLUS_3                            18                              51
  CLUS_4                            25                              44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(19Q13.13) MUTATED       20     57     14
  AMP PEAK 25(19Q13.13) WILD-TYPE     52    128     21
D25V6, multiclass
        clus
vv       AMP PEAK 25(19Q13.13) MUTATED AMP PEAK 25(19Q13.13) WILD-TYPE
  CLUS_1                            20                              52
  CLUS_2                            57                             128
  CLUS_3                            14                              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(19Q13.13) MUTATED       33     21     39
  AMP PEAK 25(19Q13.13) WILD-TYPE     66     56     80
D25V7, multiclass
        clus
vv       AMP PEAK 25(19Q13.13) MUTATED AMP PEAK 25(19Q13.13) WILD-TYPE
  CLUS_1                            33                              66
  CLUS_2                            21                              56
  CLUS_3                            39                              80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 25(19Q13.13) MUTATED       14     32     22     12     13
  AMP PEAK 25(19Q13.13) WILD-TYPE     46     63     50     13     30
D25V8, multiclass
        clus
vv       AMP PEAK 25(19Q13.13) MUTATED AMP PEAK 25(19Q13.13) WILD-TYPE
  CLUS_1                            14                              46
  CLUS_2                            32                              63
  CLUS_3                            22                              50
  CLUS_4                            12                              13
  CLUS_5                            13                              30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(19Q13.13) MUTATED       40     22     25
  AMP PEAK 25(19Q13.13) WILD-TYPE     85     55     55
D25V9, multiclass
        clus
vv       AMP PEAK 25(19Q13.13) MUTATED AMP PEAK 25(19Q13.13) WILD-TYPE
  CLUS_1                            40                              85
  CLUS_2                            22                              55
  CLUS_3                            25                              55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(19Q13.13) MUTATED       17     16      9     45
  AMP PEAK 25(19Q13.13) WILD-TYPE     47     34     17     97
D25V10, multiclass
        clus
vv       AMP PEAK 25(19Q13.13) MUTATED AMP PEAK 25(19Q13.13) WILD-TYPE
  CLUS_1                            17                              47
  CLUS_2                            16                              34
  CLUS_3                             9                              17
  CLUS_4                            45                              97
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = AMP PEAK 26(20Q11.21) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(20Q11.21) MUTATED       43     44     48
  AMP PEAK 26(20Q11.21) WILD-TYPE     86     29     45
D26V1, multiclass
        clus
vv       AMP PEAK 26(20Q11.21) MUTATED AMP PEAK 26(20Q11.21) WILD-TYPE
  CLUS_1                            43                              86
  CLUS_2                            44                              29
  CLUS_3                            48                              45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 26(20Q11.21) MUTATED       40     30     20     19      5     21
  AMP PEAK 26(20Q11.21) WILD-TYPE     31     24     37     40      4     24
D26V2, multiclass
        clus
vv       AMP PEAK 26(20Q11.21) MUTATED AMP PEAK 26(20Q11.21) WILD-TYPE
  CLUS_1                            40                              31
  CLUS_2                            30                              24
  CLUS_3                            20                              37
  CLUS_4                            19                              40
  CLUS_5                             5                               4
  CLUS_6                            21                              24
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(20Q11.21) MUTATED       23     22     31
  AMP PEAK 26(20Q11.21) WILD-TYPE     30     20     38
D26V3, multiclass
        clus
vv       AMP PEAK 26(20Q11.21) MUTATED AMP PEAK 26(20Q11.21) WILD-TYPE
  CLUS_1                            23                              30
  CLUS_2                            22                              20
  CLUS_3                            31                              38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 26(20Q11.21) MUTATED       13     17     22      9     15
  AMP PEAK 26(20Q11.21) WILD-TYPE     19     30     23     14      2
D26V4, multiclass
        clus
vv       AMP PEAK 26(20Q11.21) MUTATED AMP PEAK 26(20Q11.21) WILD-TYPE
  CLUS_1                            13                              19
  CLUS_2                            17                              30
  CLUS_3                            22                              23
  CLUS_4                             9                              14
  CLUS_5                            15                               2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 26(20Q11.21) MUTATED       30     44     37     24
  AMP PEAK 26(20Q11.21) WILD-TYPE     24     56     32     45
D26V5, multiclass
        clus
vv       AMP PEAK 26(20Q11.21) MUTATED AMP PEAK 26(20Q11.21) WILD-TYPE
  CLUS_1                            30                              24
  CLUS_2                            44                              56
  CLUS_3                            37                              32
  CLUS_4                            24                              45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(20Q11.21) MUTATED       42     81     12
  AMP PEAK 26(20Q11.21) WILD-TYPE     30    104     23
D26V6, multiclass
        clus
vv       AMP PEAK 26(20Q11.21) MUTATED AMP PEAK 26(20Q11.21) WILD-TYPE
  CLUS_1                            42                              30
  CLUS_2                            81                             104
  CLUS_3                            12                              23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(20Q11.21) MUTATED       51     37     47
  AMP PEAK 26(20Q11.21) WILD-TYPE     48     40     72
D26V7, multiclass
        clus
vv       AMP PEAK 26(20Q11.21) MUTATED AMP PEAK 26(20Q11.21) WILD-TYPE
  CLUS_1                            51                              48
  CLUS_2                            37                              40
  CLUS_3                            47                              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 26(20Q11.21) MUTATED       35     37     31     16     16
  AMP PEAK 26(20Q11.21) WILD-TYPE     25     58     41      9     27
D26V8, multiclass
        clus
vv       AMP PEAK 26(20Q11.21) MUTATED AMP PEAK 26(20Q11.21) WILD-TYPE
  CLUS_1                            35                              25
  CLUS_2                            37                              58
  CLUS_3                            31                              41
  CLUS_4                            16                               9
  CLUS_5                            16                              27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(20Q11.21) MUTATED       61     35     34
  AMP PEAK 26(20Q11.21) WILD-TYPE     64     42     46
D26V9, multiclass
        clus
vv       AMP PEAK 26(20Q11.21) MUTATED AMP PEAK 26(20Q11.21) WILD-TYPE
  CLUS_1                            61                              64
  CLUS_2                            35                              42
  CLUS_3                            34                              46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 26(20Q11.21) MUTATED       36     21     14     59
  AMP PEAK 26(20Q11.21) WILD-TYPE     28     29     12     83
D26V10, multiclass
        clus
vv       AMP PEAK 26(20Q11.21) MUTATED AMP PEAK 26(20Q11.21) WILD-TYPE
  CLUS_1                            36                              28
  CLUS_2                            21                              29
  CLUS_3                            14                              12
  CLUS_4                            59                              83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = AMP PEAK 27(21Q22.13) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(21Q22.13) MUTATED       21     16     11
  AMP PEAK 27(21Q22.13) WILD-TYPE    108     57     82
D27V1, multiclass
        clus
vv       AMP PEAK 27(21Q22.13) MUTATED AMP PEAK 27(21Q22.13) WILD-TYPE
  CLUS_1                            21                             108
  CLUS_2                            16                              57
  CLUS_3                            11                              82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 27(21Q22.13) MUTATED       10      9     12      8      3      6
  AMP PEAK 27(21Q22.13) WILD-TYPE     61     45     45     51      6     39
D27V2, multiclass
        clus
vv       AMP PEAK 27(21Q22.13) MUTATED AMP PEAK 27(21Q22.13) WILD-TYPE
  CLUS_1                            10                              61
  CLUS_2                             9                              45
  CLUS_3                            12                              45
  CLUS_4                             8                              51
  CLUS_5                             3                               6
  CLUS_6                             6                              39
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(21Q22.13) MUTATED        7      6     12
  AMP PEAK 27(21Q22.13) WILD-TYPE     46     36     57
D27V3, multiclass
        clus
vv       AMP PEAK 27(21Q22.13) MUTATED AMP PEAK 27(21Q22.13) WILD-TYPE
  CLUS_1                             7                              46
  CLUS_2                             6                              36
  CLUS_3                            12                              57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 27(21Q22.13) MUTATED        3      9      8      3      2
  AMP PEAK 27(21Q22.13) WILD-TYPE     29     38     37     20     15
D27V4, multiclass
        clus
vv       AMP PEAK 27(21Q22.13) MUTATED AMP PEAK 27(21Q22.13) WILD-TYPE
  CLUS_1                             3                              29
  CLUS_2                             9                              38
  CLUS_3                             8                              37
  CLUS_4                             3                              20
  CLUS_5                             2                              15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 27(21Q22.13) MUTATED       10     23      7      7
  AMP PEAK 27(21Q22.13) WILD-TYPE     44     77     62     62
D27V5, multiclass
        clus
vv       AMP PEAK 27(21Q22.13) MUTATED AMP PEAK 27(21Q22.13) WILD-TYPE
  CLUS_1                            10                              44
  CLUS_2                            23                              77
  CLUS_3                             7                              62
  CLUS_4                             7                              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(21Q22.13) MUTATED        9     34      4
  AMP PEAK 27(21Q22.13) WILD-TYPE     63    151     31
D27V6, multiclass
        clus
vv       AMP PEAK 27(21Q22.13) MUTATED AMP PEAK 27(21Q22.13) WILD-TYPE
  CLUS_1                             9                              63
  CLUS_2                            34                             151
  CLUS_3                             4                              31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(21Q22.13) MUTATED       17     11     20
  AMP PEAK 27(21Q22.13) WILD-TYPE     82     66     99
D27V7, multiclass
        clus
vv       AMP PEAK 27(21Q22.13) MUTATED AMP PEAK 27(21Q22.13) WILD-TYPE
  CLUS_1                            17                              82
  CLUS_2                            11                              66
  CLUS_3                            20                              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 27(21Q22.13) MUTATED        8     15     13      3      9
  AMP PEAK 27(21Q22.13) WILD-TYPE     52     80     59     22     34
D27V8, multiclass
        clus
vv       AMP PEAK 27(21Q22.13) MUTATED AMP PEAK 27(21Q22.13) WILD-TYPE
  CLUS_1                             8                              52
  CLUS_2                            15                              80
  CLUS_3                            13                              59
  CLUS_4                             3                              22
  CLUS_5                             9                              34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(21Q22.13) MUTATED       19     12     15
  AMP PEAK 27(21Q22.13) WILD-TYPE    106     65     65
D27V9, multiclass
        clus
vv       AMP PEAK 27(21Q22.13) MUTATED AMP PEAK 27(21Q22.13) WILD-TYPE
  CLUS_1                            19                             106
  CLUS_2                            12                              65
  CLUS_3                            15                              65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 27(21Q22.13) MUTATED        7      9      6     24
  AMP PEAK 27(21Q22.13) WILD-TYPE     57     41     20    118
D27V10, multiclass
        clus
vv       AMP PEAK 27(21Q22.13) MUTATED AMP PEAK 27(21Q22.13) WILD-TYPE
  CLUS_1                             7                              57
  CLUS_2                             9                              41
  CLUS_3                             6                              20
  CLUS_4                            24                             118
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(28) Variable = AMP PEAK 28(XQ28) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(XQ28) MUTATED       30     18     27
  AMP PEAK 28(XQ28) WILD-TYPE     99     55     66
D28V1, multiclass
        clus
vv       AMP PEAK 28(XQ28) MUTATED AMP PEAK 28(XQ28) WILD-TYPE
  CLUS_1                        30                          99
  CLUS_2                        18                          55
  CLUS_3                        27                          66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 28(XQ28) MUTATED       15     16     12     19      3     10
  AMP PEAK 28(XQ28) WILD-TYPE     56     38     45     40      6     35
D28V2, multiclass
        clus
vv       AMP PEAK 28(XQ28) MUTATED AMP PEAK 28(XQ28) WILD-TYPE
  CLUS_1                        15                          56
  CLUS_2                        16                          38
  CLUS_3                        12                          45
  CLUS_4                        19                          40
  CLUS_5                         3                           6
  CLUS_6                        10                          35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(XQ28) MUTATED       14     10     20
  AMP PEAK 28(XQ28) WILD-TYPE     39     32     49
D28V3, multiclass
        clus
vv       AMP PEAK 28(XQ28) MUTATED AMP PEAK 28(XQ28) WILD-TYPE
  CLUS_1                        14                          39
  CLUS_2                        10                          32
  CLUS_3                        20                          49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 28(XQ28) MUTATED        7     15     12      6      4
  AMP PEAK 28(XQ28) WILD-TYPE     25     32     33     17     13
D28V4, multiclass
        clus
vv       AMP PEAK 28(XQ28) MUTATED AMP PEAK 28(XQ28) WILD-TYPE
  CLUS_1                         7                          25
  CLUS_2                        15                          32
  CLUS_3                        12                          33
  CLUS_4                         6                          17
  CLUS_5                         4                          13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 28(XQ28) MUTATED       15     24     15     20
  AMP PEAK 28(XQ28) WILD-TYPE     39     76     54     49
D28V5, multiclass
        clus
vv       AMP PEAK 28(XQ28) MUTATED AMP PEAK 28(XQ28) WILD-TYPE
  CLUS_1                        15                          39
  CLUS_2                        24                          76
  CLUS_3                        15                          54
  CLUS_4                        20                          49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(XQ28) MUTATED       16     51      7
  AMP PEAK 28(XQ28) WILD-TYPE     56    134     28
D28V6, multiclass
        clus
vv       AMP PEAK 28(XQ28) MUTATED AMP PEAK 28(XQ28) WILD-TYPE
  CLUS_1                        16                          56
  CLUS_2                        51                         134
  CLUS_3                         7                          28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(XQ28) MUTATED       29      8     38
  AMP PEAK 28(XQ28) WILD-TYPE     70     69     81
D28V7, multiclass
        clus
vv       AMP PEAK 28(XQ28) MUTATED AMP PEAK 28(XQ28) WILD-TYPE
  CLUS_1                        29                          70
  CLUS_2                         8                          69
  CLUS_3                        38                          81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 28(XQ28) MUTATED       13     29     12      9     12
  AMP PEAK 28(XQ28) WILD-TYPE     47     66     60     16     31
D28V8, multiclass
        clus
vv       AMP PEAK 28(XQ28) MUTATED AMP PEAK 28(XQ28) WILD-TYPE
  CLUS_1                        13                          47
  CLUS_2                        29                          66
  CLUS_3                        12                          60
  CLUS_4                         9                          16
  CLUS_5                        12                          31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(XQ28) MUTATED       33     11     26
  AMP PEAK 28(XQ28) WILD-TYPE     92     66     54
D28V9, multiclass
        clus
vv       AMP PEAK 28(XQ28) MUTATED AMP PEAK 28(XQ28) WILD-TYPE
  CLUS_1                        33                          92
  CLUS_2                        11                          66
  CLUS_3                        26                          54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 28(XQ28) MUTATED       15      6      6     43
  AMP PEAK 28(XQ28) WILD-TYPE     49     44     20     99
D28V10, multiclass
        clus
vv       AMP PEAK 28(XQ28) MUTATED AMP PEAK 28(XQ28) WILD-TYPE
  CLUS_1                        15                          49
  CLUS_2                         6                          44
  CLUS_3                         6                          20
  CLUS_4                        43                          99
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(29) Variable = DEL PEAK  1(1P36.23) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.23) MUTATED       10     20     10
  DEL PEAK  1(1P36.23) WILD-TYPE    119     53     83
D29V1, multiclass
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                           10                            119
  CLUS_2                           20                             53
  CLUS_3                           10                             83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.23) MUTATED       17      5      2     12      1      3
  DEL PEAK  1(1P36.23) WILD-TYPE     54     49     55     47      8     42
D29V2, multiclass
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                           17                             54
  CLUS_2                            5                             49
  CLUS_3                            2                             55
  CLUS_4                           12                             47
  CLUS_5                            1                              8
  CLUS_6                            3                             42
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.23) MUTATED        7      5     11
  DEL PEAK  1(1P36.23) WILD-TYPE     46     37     58
D29V3, multiclass
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                            7                             46
  CLUS_2                            5                             37
  CLUS_3                           11                             58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.23) MUTATED        5      7      2      4      5
  DEL PEAK  1(1P36.23) WILD-TYPE     27     40     43     19     12
D29V4, multiclass
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                            5                             27
  CLUS_2                            7                             40
  CLUS_3                            2                             43
  CLUS_4                            4                             19
  CLUS_5                            5                             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.23) MUTATED       10      3     14     13
  DEL PEAK  1(1P36.23) WILD-TYPE     44     97     55     56
D29V5, multiclass
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                           10                             44
  CLUS_2                            3                             97
  CLUS_3                           14                             55
  CLUS_4                           13                             56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.23) MUTATED       18     12     10
  DEL PEAK  1(1P36.23) WILD-TYPE     54    173     25
D29V6, multiclass
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                           18                             54
  CLUS_2                           12                            173
  CLUS_3                           10                             25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.23) MUTATED       17      6     17
  DEL PEAK  1(1P36.23) WILD-TYPE     82     71    102
D29V7, multiclass
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                           17                             82
  CLUS_2                            6                             71
  CLUS_3                           17                            102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.23) MUTATED       16     11      1      5      7
  DEL PEAK  1(1P36.23) WILD-TYPE     44     84     71     20     36
D29V8, multiclass
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                           16                             44
  CLUS_2                           11                             84
  CLUS_3                            1                             71
  CLUS_4                            5                             20
  CLUS_5                            7                             36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.23) MUTATED       23      9      7
  DEL PEAK  1(1P36.23) WILD-TYPE    102     68     73
D29V9, multiclass
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                           23                            102
  CLUS_2                            9                             68
  CLUS_3                            7                             73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.23) MUTATED       16      3      2     18
  DEL PEAK  1(1P36.23) WILD-TYPE     48     47     24    124
D29V10, multiclass
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                           16                             48
  CLUS_2                            3                             47
  CLUS_3                            2                             24
  CLUS_4                           18                            124
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(30) Variable = DEL PEAK  2(1P13.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P13.2) MUTATED        9     13     12
  DEL PEAK  2(1P13.2) WILD-TYPE    120     60     81
D30V1, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                           9                           120
  CLUS_2                          13                            60
  CLUS_3                          12                            81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1P13.2) MUTATED        4      5      3     16      1      5
  DEL PEAK  2(1P13.2) WILD-TYPE     67     49     54     43      8     40
D30V2, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                           4                            67
  CLUS_2                           5                            49
  CLUS_3                           3                            54
  CLUS_4                          16                            43
  CLUS_5                           1                             8
  CLUS_6                           5                            40
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P13.2) MUTATED        4      6      3
  DEL PEAK  2(1P13.2) WILD-TYPE     49     36     66
D30V3, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                           4                            49
  CLUS_2                           6                            36
  CLUS_3                           3                            66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P13.2) MUTATED        3      2      2      3      3
  DEL PEAK  2(1P13.2) WILD-TYPE     29     45     43     20     14
D30V4, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                           3                            29
  CLUS_2                           2                            45
  CLUS_3                           2                            43
  CLUS_4                           3                            20
  CLUS_5                           3                            14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P13.2) MUTATED        7      5      3     19
  DEL PEAK  2(1P13.2) WILD-TYPE     47     95     66     50
D30V5, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                           7                            47
  CLUS_2                           5                            95
  CLUS_3                           3                            66
  CLUS_4                          19                            50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P13.2) MUTATED        4     23      7
  DEL PEAK  2(1P13.2) WILD-TYPE     68    162     28
D30V6, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                           4                            68
  CLUS_2                          23                           162
  CLUS_3                           7                            28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P13.2) MUTATED        6      6     22
  DEL PEAK  2(1P13.2) WILD-TYPE     93     71     97
D30V7, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                           6                            93
  CLUS_2                           6                            71
  CLUS_3                          22                            97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P13.2) MUTATED        4     13      5      5      7
  DEL PEAK  2(1P13.2) WILD-TYPE     56     82     67     20     36
D30V8, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                           4                            56
  CLUS_2                          13                            82
  CLUS_3                           5                            67
  CLUS_4                           5                            20
  CLUS_5                           7                            36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P13.2) MUTATED       14      8     12
  DEL PEAK  2(1P13.2) WILD-TYPE    111     69     68
D30V9, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                          14                           111
  CLUS_2                           8                            69
  CLUS_3                          12                            68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P13.2) MUTATED        3      5      1     25
  DEL PEAK  2(1P13.2) WILD-TYPE     61     45     25    117
D30V10, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                           3                            61
  CLUS_2                           5                            45
  CLUS_3                           1                            25
  CLUS_4                          25                           117
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(31) Variable = DEL PEAK  3(2Q22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q22.1) MUTATED       28     19     18
  DEL PEAK  3(2Q22.1) WILD-TYPE    101     54     75
D31V1, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                          28                           101
  CLUS_2                          19                            54
  CLUS_3                          18                            75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(2Q22.1) MUTATED       11     17     13     14      1      9
  DEL PEAK  3(2Q22.1) WILD-TYPE     60     37     44     45      8     36
D31V2, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                          11                            60
  CLUS_2                          17                            37
  CLUS_3                          13                            44
  CLUS_4                          14                            45
  CLUS_5                           1                             8
  CLUS_6                           9                            36
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q22.1) MUTATED       14      9     14
  DEL PEAK  3(2Q22.1) WILD-TYPE     39     33     55
D31V3, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                          14                            39
  CLUS_2                           9                            33
  CLUS_3                          14                            55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(2Q22.1) MUTATED        7     10      8      7      5
  DEL PEAK  3(2Q22.1) WILD-TYPE     25     37     37     16     12
D31V4, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           7                            25
  CLUS_2                          10                            37
  CLUS_3                           8                            37
  CLUS_4                           7                            16
  CLUS_5                           5                            12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2Q22.1) MUTATED        7     29      9     20
  DEL PEAK  3(2Q22.1) WILD-TYPE     47     71     60     49
D31V5, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           7                            47
  CLUS_2                          29                            71
  CLUS_3                           9                            60
  CLUS_4                          20                            49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q22.1) MUTATED       10     45     10
  DEL PEAK  3(2Q22.1) WILD-TYPE     62    140     25
D31V6, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                          10                            62
  CLUS_2                          45                           140
  CLUS_3                          10                            25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q22.1) MUTATED       22     16     27
  DEL PEAK  3(2Q22.1) WILD-TYPE     77     61     92
D31V7, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                          22                            77
  CLUS_2                          16                            61
  CLUS_3                          27                            92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(2Q22.1) MUTATED        8     27     13      7     10
  DEL PEAK  3(2Q22.1) WILD-TYPE     52     68     59     18     33
D31V8, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           8                            52
  CLUS_2                          27                            68
  CLUS_3                          13                            59
  CLUS_4                           7                            18
  CLUS_5                          10                            33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q22.1) MUTATED       28     13     18
  DEL PEAK  3(2Q22.1) WILD-TYPE     97     64     62
D31V9, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                          28                            97
  CLUS_2                          13                            64
  CLUS_3                          18                            62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2Q22.1) MUTATED        8     10      3     38
  DEL PEAK  3(2Q22.1) WILD-TYPE     56     40     23    104
D31V10, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           8                            56
  CLUS_2                          10                            40
  CLUS_3                           3                            23
  CLUS_4                          38                           104
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(32) Variable = DEL PEAK  4(2Q37.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.1) MUTATED       47     44     38
  DEL PEAK  4(2Q37.1) WILD-TYPE     82     29     55
D32V1, multiclass
        clus
vv       DEL PEAK  4(2Q37.1) MUTATED DEL PEAK  4(2Q37.1) WILD-TYPE
  CLUS_1                          47                            82
  CLUS_2                          44                            29
  CLUS_3                          38                            55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(2Q37.1) MUTATED       16     26     27     36      3     21
  DEL PEAK  4(2Q37.1) WILD-TYPE     55     28     30     23      6     24
D32V2, multiclass
        clus
vv       DEL PEAK  4(2Q37.1) MUTATED DEL PEAK  4(2Q37.1) WILD-TYPE
  CLUS_1                          16                            55
  CLUS_2                          26                            28
  CLUS_3                          27                            30
  CLUS_4                          36                            23
  CLUS_5                           3                             6
  CLUS_6                          21                            24
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.1) MUTATED       24     20     24
  DEL PEAK  4(2Q37.1) WILD-TYPE     29     22     45
D32V3, multiclass
        clus
vv       DEL PEAK  4(2Q37.1) MUTATED DEL PEAK  4(2Q37.1) WILD-TYPE
  CLUS_1                          24                            29
  CLUS_2                          20                            22
  CLUS_3                          24                            45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(2Q37.1) MUTATED       15     16     22     12      3
  DEL PEAK  4(2Q37.1) WILD-TYPE     17     31     23     11     14
D32V4, multiclass
        clus
vv       DEL PEAK  4(2Q37.1) MUTATED DEL PEAK  4(2Q37.1) WILD-TYPE
  CLUS_1                          15                            17
  CLUS_2                          16                            31
  CLUS_3                          22                            23
  CLUS_4                          12                            11
  CLUS_5                           3                            14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q37.1) MUTATED       13     52     21     42
  DEL PEAK  4(2Q37.1) WILD-TYPE     41     48     48     27
D32V5, multiclass
        clus
vv       DEL PEAK  4(2Q37.1) MUTATED DEL PEAK  4(2Q37.1) WILD-TYPE
  CLUS_1                          13                            41
  CLUS_2                          52                            48
  CLUS_3                          21                            48
  CLUS_4                          42                            27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.1) MUTATED       14     93     21
  DEL PEAK  4(2Q37.1) WILD-TYPE     58     92     14
D32V6, multiclass
        clus
vv       DEL PEAK  4(2Q37.1) MUTATED DEL PEAK  4(2Q37.1) WILD-TYPE
  CLUS_1                          14                            58
  CLUS_2                          93                            92
  CLUS_3                          21                            14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.1) MUTATED       35     30     64
  DEL PEAK  4(2Q37.1) WILD-TYPE     64     47     55
D32V7, multiclass
        clus
vv       DEL PEAK  4(2Q37.1) MUTATED DEL PEAK  4(2Q37.1) WILD-TYPE
  CLUS_1                          35                            64
  CLUS_2                          30                            47
  CLUS_3                          64                            55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(2Q37.1) MUTATED       13     48     32     11     25
  DEL PEAK  4(2Q37.1) WILD-TYPE     47     47     40     14     18
D32V8, multiclass
        clus
vv       DEL PEAK  4(2Q37.1) MUTATED DEL PEAK  4(2Q37.1) WILD-TYPE
  CLUS_1                          13                            47
  CLUS_2                          48                            47
  CLUS_3                          32                            40
  CLUS_4                          11                            14
  CLUS_5                          25                            18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.1) MUTATED       54     27     42
  DEL PEAK  4(2Q37.1) WILD-TYPE     71     50     38
D32V9, multiclass
        clus
vv       DEL PEAK  4(2Q37.1) MUTATED DEL PEAK  4(2Q37.1) WILD-TYPE
  CLUS_1                          54                            71
  CLUS_2                          27                            50
  CLUS_3                          42                            38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q37.1) MUTATED       13     20      9     81
  DEL PEAK  4(2Q37.1) WILD-TYPE     51     30     17     61
D32V10, multiclass
        clus
vv       DEL PEAK  4(2Q37.1) MUTATED DEL PEAK  4(2Q37.1) WILD-TYPE
  CLUS_1                          13                            51
  CLUS_2                          20                            30
  CLUS_3                           9                            17
  CLUS_4                          81                            61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(33) Variable = DEL PEAK  5(3P14.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P14.2) MUTATED       40     47     47
  DEL PEAK  5(3P14.2) WILD-TYPE     89     26     46
D33V1, multiclass
        clus
vv       DEL PEAK  5(3P14.2) MUTATED DEL PEAK  5(3P14.2) WILD-TYPE
  CLUS_1                          40                            89
  CLUS_2                          47                            26
  CLUS_3                          47                            46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(3P14.2) MUTATED       18     32     19     35      7     23
  DEL PEAK  5(3P14.2) WILD-TYPE     53     22     38     24      2     22
D33V2, multiclass
        clus
vv       DEL PEAK  5(3P14.2) MUTATED DEL PEAK  5(3P14.2) WILD-TYPE
  CLUS_1                          18                            53
  CLUS_2                          32                            22
  CLUS_3                          19                            38
  CLUS_4                          35                            24
  CLUS_5                           7                             2
  CLUS_6                          23                            22
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P14.2) MUTATED       20     23     24
  DEL PEAK  5(3P14.2) WILD-TYPE     33     19     45
D33V3, multiclass
        clus
vv       DEL PEAK  5(3P14.2) MUTATED DEL PEAK  5(3P14.2) WILD-TYPE
  CLUS_1                          20                            33
  CLUS_2                          23                            19
  CLUS_3                          24                            45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(3P14.2) MUTATED       11     12     24     12      8
  DEL PEAK  5(3P14.2) WILD-TYPE     21     35     21     11      9
D33V4, multiclass
        clus
vv       DEL PEAK  5(3P14.2) MUTATED DEL PEAK  5(3P14.2) WILD-TYPE
  CLUS_1                          11                            21
  CLUS_2                          12                            35
  CLUS_3                          24                            21
  CLUS_4                          12                            11
  CLUS_5                           8                             9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(3P14.2) MUTATED       30     47     18     37
  DEL PEAK  5(3P14.2) WILD-TYPE     24     53     51     32
D33V5, multiclass
        clus
vv       DEL PEAK  5(3P14.2) MUTATED DEL PEAK  5(3P14.2) WILD-TYPE
  CLUS_1                          30                            24
  CLUS_2                          47                            53
  CLUS_3                          18                            51
  CLUS_4                          37                            32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P14.2) MUTATED       17    102     13
  DEL PEAK  5(3P14.2) WILD-TYPE     55     83     22
D33V6, multiclass
        clus
vv       DEL PEAK  5(3P14.2) MUTATED DEL PEAK  5(3P14.2) WILD-TYPE
  CLUS_1                          17                            55
  CLUS_2                         102                            83
  CLUS_3                          13                            22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P14.2) MUTATED       33     37     64
  DEL PEAK  5(3P14.2) WILD-TYPE     66     40     55
D33V7, multiclass
        clus
vv       DEL PEAK  5(3P14.2) MUTATED DEL PEAK  5(3P14.2) WILD-TYPE
  CLUS_1                          33                            66
  CLUS_2                          37                            40
  CLUS_3                          64                            55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(3P14.2) MUTATED       13     54     34     13     20
  DEL PEAK  5(3P14.2) WILD-TYPE     47     41     38     12     23
D33V8, multiclass
        clus
vv       DEL PEAK  5(3P14.2) MUTATED DEL PEAK  5(3P14.2) WILD-TYPE
  CLUS_1                          13                            47
  CLUS_2                          54                            41
  CLUS_3                          34                            38
  CLUS_4                          13                            12
  CLUS_5                          20                            23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P14.2) MUTATED       44     35     48
  DEL PEAK  5(3P14.2) WILD-TYPE     81     42     32
D33V9, multiclass
        clus
vv       DEL PEAK  5(3P14.2) MUTATED DEL PEAK  5(3P14.2) WILD-TYPE
  CLUS_1                          44                            81
  CLUS_2                          35                            42
  CLUS_3                          48                            32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(3P14.2) MUTATED       14     30     14     69
  DEL PEAK  5(3P14.2) WILD-TYPE     50     20     12     73
D33V10, multiclass
        clus
vv       DEL PEAK  5(3P14.2) MUTATED DEL PEAK  5(3P14.2) WILD-TYPE
  CLUS_1                          14                            50
  CLUS_2                          30                            20
  CLUS_3                          14                            12
  CLUS_4                          69                            73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(34) Variable = DEL PEAK  6(4Q21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(4Q21.3) MUTATED       21     48     34
  DEL PEAK  6(4Q21.3) WILD-TYPE    108     25     59
D34V1, multiclass
        clus
vv       DEL PEAK  6(4Q21.3) MUTATED DEL PEAK  6(4Q21.3) WILD-TYPE
  CLUS_1                          21                           108
  CLUS_2                          48                            25
  CLUS_3                          34                            59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(4Q21.3) MUTATED       21     18     22     26      4     12
  DEL PEAK  6(4Q21.3) WILD-TYPE     50     36     35     33      5     33
D34V2, multiclass
        clus
vv       DEL PEAK  6(4Q21.3) MUTATED DEL PEAK  6(4Q21.3) WILD-TYPE
  CLUS_1                          21                            50
  CLUS_2                          18                            36
  CLUS_3                          22                            35
  CLUS_4                          26                            33
  CLUS_5                           4                             5
  CLUS_6                          12                            33
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(4Q21.3) MUTATED       17     13     19
  DEL PEAK  6(4Q21.3) WILD-TYPE     36     29     50
D34V3, multiclass
        clus
vv       DEL PEAK  6(4Q21.3) MUTATED DEL PEAK  6(4Q21.3) WILD-TYPE
  CLUS_1                          17                            36
  CLUS_2                          13                            29
  CLUS_3                          19                            50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(4Q21.3) MUTATED       11     11     14      7      6
  DEL PEAK  6(4Q21.3) WILD-TYPE     21     36     31     16     11
D34V4, multiclass
        clus
vv       DEL PEAK  6(4Q21.3) MUTATED DEL PEAK  6(4Q21.3) WILD-TYPE
  CLUS_1                          11                            21
  CLUS_2                          11                            36
  CLUS_3                          14                            31
  CLUS_4                           7                            16
  CLUS_5                           6                            11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(4Q21.3) MUTATED       22     30     17     34
  DEL PEAK  6(4Q21.3) WILD-TYPE     32     70     52     35
D34V5, multiclass
        clus
vv       DEL PEAK  6(4Q21.3) MUTATED DEL PEAK  6(4Q21.3) WILD-TYPE
  CLUS_1                          22                            32
  CLUS_2                          30                            70
  CLUS_3                          17                            52
  CLUS_4                          34                            35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(4Q21.3) MUTATED       21     61     21
  DEL PEAK  6(4Q21.3) WILD-TYPE     51    124     14
D34V6, multiclass
        clus
vv       DEL PEAK  6(4Q21.3) MUTATED DEL PEAK  6(4Q21.3) WILD-TYPE
  CLUS_1                          21                            51
  CLUS_2                          61                           124
  CLUS_3                          21                            14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(4Q21.3) MUTATED       30     29     44
  DEL PEAK  6(4Q21.3) WILD-TYPE     69     48     75
D34V7, multiclass
        clus
vv       DEL PEAK  6(4Q21.3) MUTATED DEL PEAK  6(4Q21.3) WILD-TYPE
  CLUS_1                          30                            69
  CLUS_2                          29                            48
  CLUS_3                          44                            75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(4Q21.3) MUTATED       16     34     24      8     21
  DEL PEAK  6(4Q21.3) WILD-TYPE     44     61     48     17     22
D34V8, multiclass
        clus
vv       DEL PEAK  6(4Q21.3) MUTATED DEL PEAK  6(4Q21.3) WILD-TYPE
  CLUS_1                          16                            44
  CLUS_2                          34                            61
  CLUS_3                          24                            48
  CLUS_4                           8                            17
  CLUS_5                          21                            22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(4Q21.3) MUTATED       45     29     24
  DEL PEAK  6(4Q21.3) WILD-TYPE     80     48     56
D34V9, multiclass
        clus
vv       DEL PEAK  6(4Q21.3) MUTATED DEL PEAK  6(4Q21.3) WILD-TYPE
  CLUS_1                          45                            80
  CLUS_2                          29                            48
  CLUS_3                          24                            56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(4Q21.3) MUTATED       17     21      8     52
  DEL PEAK  6(4Q21.3) WILD-TYPE     47     29     18     90
D34V10, multiclass
        clus
vv       DEL PEAK  6(4Q21.3) MUTATED DEL PEAK  6(4Q21.3) WILD-TYPE
  CLUS_1                          17                            47
  CLUS_2                          21                            29
  CLUS_3                           8                            18
  CLUS_4                          52                            90
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(35) Variable = DEL PEAK  7(4Q22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(4Q22.1) MUTATED       17     51     32
  DEL PEAK  7(4Q22.1) WILD-TYPE    112     22     61
D35V1, multiclass
        clus
vv       DEL PEAK  7(4Q22.1) MUTATED DEL PEAK  7(4Q22.1) WILD-TYPE
  CLUS_1                          17                           112
  CLUS_2                          51                            22
  CLUS_3                          32                            61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(4Q22.1) MUTATED       21     20     20     24      5     10
  DEL PEAK  7(4Q22.1) WILD-TYPE     50     34     37     35      4     35
D35V2, multiclass
        clus
vv       DEL PEAK  7(4Q22.1) MUTATED DEL PEAK  7(4Q22.1) WILD-TYPE
  CLUS_1                          21                            50
  CLUS_2                          20                            34
  CLUS_3                          20                            37
  CLUS_4                          24                            35
  CLUS_5                           5                             4
  CLUS_6                          10                            35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(4Q22.1) MUTATED       16     12     17
  DEL PEAK  7(4Q22.1) WILD-TYPE     37     30     52
D35V3, multiclass
        clus
vv       DEL PEAK  7(4Q22.1) MUTATED DEL PEAK  7(4Q22.1) WILD-TYPE
  CLUS_1                          16                            37
  CLUS_2                          12                            30
  CLUS_3                          17                            52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(4Q22.1) MUTATED       10     11     12      6      6
  DEL PEAK  7(4Q22.1) WILD-TYPE     22     36     33     17     11
D35V4, multiclass
        clus
vv       DEL PEAK  7(4Q22.1) MUTATED DEL PEAK  7(4Q22.1) WILD-TYPE
  CLUS_1                          10                            22
  CLUS_2                          11                            36
  CLUS_3                          12                            33
  CLUS_4                           6                            17
  CLUS_5                           6                            11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(4Q22.1) MUTATED       22     29     17     32
  DEL PEAK  7(4Q22.1) WILD-TYPE     32     71     52     37
D35V5, multiclass
        clus
vv       DEL PEAK  7(4Q22.1) MUTATED DEL PEAK  7(4Q22.1) WILD-TYPE
  CLUS_1                          22                            32
  CLUS_2                          29                            71
  CLUS_3                          17                            52
  CLUS_4                          32                            37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(4Q22.1) MUTATED       21     59     20
  DEL PEAK  7(4Q22.1) WILD-TYPE     51    126     15
D35V6, multiclass
        clus
vv       DEL PEAK  7(4Q22.1) MUTATED DEL PEAK  7(4Q22.1) WILD-TYPE
  CLUS_1                          21                            51
  CLUS_2                          59                           126
  CLUS_3                          20                            15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(4Q22.1) MUTATED       30     27     43
  DEL PEAK  7(4Q22.1) WILD-TYPE     69     50     76
D35V7, multiclass
        clus
vv       DEL PEAK  7(4Q22.1) MUTATED DEL PEAK  7(4Q22.1) WILD-TYPE
  CLUS_1                          30                            69
  CLUS_2                          27                            50
  CLUS_3                          43                            76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(4Q22.1) MUTATED       16     33     22      6     23
  DEL PEAK  7(4Q22.1) WILD-TYPE     44     62     50     19     20
D35V8, multiclass
        clus
vv       DEL PEAK  7(4Q22.1) MUTATED DEL PEAK  7(4Q22.1) WILD-TYPE
  CLUS_1                          16                            44
  CLUS_2                          33                            62
  CLUS_3                          22                            50
  CLUS_4                           6                            19
  CLUS_5                          23                            20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(4Q22.1) MUTATED       47     27     21
  DEL PEAK  7(4Q22.1) WILD-TYPE     78     50     59
D35V9, multiclass
        clus
vv       DEL PEAK  7(4Q22.1) MUTATED DEL PEAK  7(4Q22.1) WILD-TYPE
  CLUS_1                          47                            78
  CLUS_2                          27                            50
  CLUS_3                          21                            59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(4Q22.1) MUTATED       17     19      7     52
  DEL PEAK  7(4Q22.1) WILD-TYPE     47     31     19     90
D35V10, multiclass
        clus
vv       DEL PEAK  7(4Q22.1) MUTATED DEL PEAK  7(4Q22.1) WILD-TYPE
  CLUS_1                          17                            47
  CLUS_2                          19                            31
  CLUS_3                           7                            19
  CLUS_4                          52                            90
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(36) Variable = DEL PEAK  8(4Q35.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4Q35.2) MUTATED       25     52     37
  DEL PEAK  8(4Q35.2) WILD-TYPE    104     21     56
D36V1, multiclass
        clus
vv       DEL PEAK  8(4Q35.2) MUTATED DEL PEAK  8(4Q35.2) WILD-TYPE
  CLUS_1                          25                           104
  CLUS_2                          52                            21
  CLUS_3                          37                            56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(4Q35.2) MUTATED       23     21     21     31      4     14
  DEL PEAK  8(4Q35.2) WILD-TYPE     48     33     36     28      5     31
D36V2, multiclass
        clus
vv       DEL PEAK  8(4Q35.2) MUTATED DEL PEAK  8(4Q35.2) WILD-TYPE
  CLUS_1                          23                            48
  CLUS_2                          21                            33
  CLUS_3                          21                            36
  CLUS_4                          31                            28
  CLUS_5                           4                             5
  CLUS_6                          14                            31
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4Q35.2) MUTATED       20     15     26
  DEL PEAK  8(4Q35.2) WILD-TYPE     33     27     43
D36V3, multiclass
        clus
vv       DEL PEAK  8(4Q35.2) MUTATED DEL PEAK  8(4Q35.2) WILD-TYPE
  CLUS_1                          20                            33
  CLUS_2                          15                            27
  CLUS_3                          26                            43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(4Q35.2) MUTATED       12     18     16      9      6
  DEL PEAK  8(4Q35.2) WILD-TYPE     20     29     29     14     11
D36V4, multiclass
        clus
vv       DEL PEAK  8(4Q35.2) MUTATED DEL PEAK  8(4Q35.2) WILD-TYPE
  CLUS_1                          12                            20
  CLUS_2                          18                            29
  CLUS_3                          16                            29
  CLUS_4                           9                            14
  CLUS_5                           6                            11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(4Q35.2) MUTATED       26     31     21     36
  DEL PEAK  8(4Q35.2) WILD-TYPE     28     69     48     33
D36V5, multiclass
        clus
vv       DEL PEAK  8(4Q35.2) MUTATED DEL PEAK  8(4Q35.2) WILD-TYPE
  CLUS_1                          26                            28
  CLUS_2                          31                            69
  CLUS_3                          21                            48
  CLUS_4                          36                            33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4Q35.2) MUTATED       24     67     23
  DEL PEAK  8(4Q35.2) WILD-TYPE     48    118     12
D36V6, multiclass
        clus
vv       DEL PEAK  8(4Q35.2) MUTATED DEL PEAK  8(4Q35.2) WILD-TYPE
  CLUS_1                          24                            48
  CLUS_2                          67                           118
  CLUS_3                          23                            12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4Q35.2) MUTATED       33     33     48
  DEL PEAK  8(4Q35.2) WILD-TYPE     66     44     71
D36V7, multiclass
        clus
vv       DEL PEAK  8(4Q35.2) MUTATED DEL PEAK  8(4Q35.2) WILD-TYPE
  CLUS_1                          33                            66
  CLUS_2                          33                            44
  CLUS_3                          48                            71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(4Q35.2) MUTATED       19     34     29      8     24
  DEL PEAK  8(4Q35.2) WILD-TYPE     41     61     43     17     19
D36V8, multiclass
        clus
vv       DEL PEAK  8(4Q35.2) MUTATED DEL PEAK  8(4Q35.2) WILD-TYPE
  CLUS_1                          19                            41
  CLUS_2                          34                            61
  CLUS_3                          29                            43
  CLUS_4                           8                            17
  CLUS_5                          24                            19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4Q35.2) MUTATED       51     32     26
  DEL PEAK  8(4Q35.2) WILD-TYPE     74     45     54
D36V9, multiclass
        clus
vv       DEL PEAK  8(4Q35.2) MUTATED DEL PEAK  8(4Q35.2) WILD-TYPE
  CLUS_1                          51                            74
  CLUS_2                          32                            45
  CLUS_3                          26                            54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(4Q35.2) MUTATED       19     25      7     58
  DEL PEAK  8(4Q35.2) WILD-TYPE     45     25     19     84
D36V10, multiclass
        clus
vv       DEL PEAK  8(4Q35.2) MUTATED DEL PEAK  8(4Q35.2) WILD-TYPE
  CLUS_1                          19                            45
  CLUS_2                          25                            25
  CLUS_3                           7                            19
  CLUS_4                          58                            84
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(37) Variable = DEL PEAK  9(5Q12.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(5Q12.1) MUTATED       19     33     24
  DEL PEAK  9(5Q12.1) WILD-TYPE    110     40     69
D37V1, multiclass
        clus
vv       DEL PEAK  9(5Q12.1) MUTATED DEL PEAK  9(5Q12.1) WILD-TYPE
  CLUS_1                          19                           110
  CLUS_2                          33                            40
  CLUS_3                          24                            69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(5Q12.1) MUTATED       18     11     15     17      2     13
  DEL PEAK  9(5Q12.1) WILD-TYPE     53     43     42     42      7     32
D37V2, multiclass
        clus
vv       DEL PEAK  9(5Q12.1) MUTATED DEL PEAK  9(5Q12.1) WILD-TYPE
  CLUS_1                          18                            53
  CLUS_2                          11                            43
  CLUS_3                          15                            42
  CLUS_4                          17                            42
  CLUS_5                           2                             7
  CLUS_6                          13                            32
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(5Q12.1) MUTATED       20     13     13
  DEL PEAK  9(5Q12.1) WILD-TYPE     33     29     56
D37V3, multiclass
        clus
vv       DEL PEAK  9(5Q12.1) MUTATED DEL PEAK  9(5Q12.1) WILD-TYPE
  CLUS_1                          20                            33
  CLUS_2                          13                            29
  CLUS_3                          13                            56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(5Q12.1) MUTATED       12      6     12     10      6
  DEL PEAK  9(5Q12.1) WILD-TYPE     20     41     33     13     11
D37V4, multiclass
        clus
vv       DEL PEAK  9(5Q12.1) MUTATED DEL PEAK  9(5Q12.1) WILD-TYPE
  CLUS_1                          12                            20
  CLUS_2                           6                            41
  CLUS_3                          12                            33
  CLUS_4                          10                            13
  CLUS_5                           6                            11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(5Q12.1) MUTATED       17     26     13     19
  DEL PEAK  9(5Q12.1) WILD-TYPE     37     74     56     50
D37V5, multiclass
        clus
vv       DEL PEAK  9(5Q12.1) MUTATED DEL PEAK  9(5Q12.1) WILD-TYPE
  CLUS_1                          17                            37
  CLUS_2                          26                            74
  CLUS_3                          13                            56
  CLUS_4                          19                            50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(5Q12.1) MUTATED       18     49      8
  DEL PEAK  9(5Q12.1) WILD-TYPE     54    136     27
D37V6, multiclass
        clus
vv       DEL PEAK  9(5Q12.1) MUTATED DEL PEAK  9(5Q12.1) WILD-TYPE
  CLUS_1                          18                            54
  CLUS_2                          49                           136
  CLUS_3                           8                            27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(5Q12.1) MUTATED       19     16     41
  DEL PEAK  9(5Q12.1) WILD-TYPE     80     61     78
D37V7, multiclass
        clus
vv       DEL PEAK  9(5Q12.1) MUTATED DEL PEAK  9(5Q12.1) WILD-TYPE
  CLUS_1                          19                            80
  CLUS_2                          16                            61
  CLUS_3                          41                            78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(5Q12.1) MUTATED       12     22     19     10     13
  DEL PEAK  9(5Q12.1) WILD-TYPE     48     73     53     15     30
D37V8, multiclass
        clus
vv       DEL PEAK  9(5Q12.1) MUTATED DEL PEAK  9(5Q12.1) WILD-TYPE
  CLUS_1                          12                            48
  CLUS_2                          22                            73
  CLUS_3                          19                            53
  CLUS_4                          10                            15
  CLUS_5                          13                            30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(5Q12.1) MUTATED       31     20     23
  DEL PEAK  9(5Q12.1) WILD-TYPE     94     57     57
D37V9, multiclass
        clus
vv       DEL PEAK  9(5Q12.1) MUTATED DEL PEAK  9(5Q12.1) WILD-TYPE
  CLUS_1                          31                            94
  CLUS_2                          20                            57
  CLUS_3                          23                            57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(5Q12.1) MUTATED       14     15     13     32
  DEL PEAK  9(5Q12.1) WILD-TYPE     50     35     13    110
D37V10, multiclass
        clus
vv       DEL PEAK  9(5Q12.1) MUTATED DEL PEAK  9(5Q12.1) WILD-TYPE
  CLUS_1                          14                            50
  CLUS_2                          15                            35
  CLUS_3                          13                            13
  CLUS_4                          32                           110
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(38) Variable = DEL PEAK 10(5Q35.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(5Q35.2) MUTATED       19     30     22
  DEL PEAK 10(5Q35.2) WILD-TYPE    110     43     71
D38V1, multiclass
        clus
vv       DEL PEAK 10(5Q35.2) MUTATED DEL PEAK 10(5Q35.2) WILD-TYPE
  CLUS_1                          19                           110
  CLUS_2                          30                            43
  CLUS_3                          22                            71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(5Q35.2) MUTATED       17     13     14     15      3      9
  DEL PEAK 10(5Q35.2) WILD-TYPE     54     41     43     44      6     36
D38V2, multiclass
        clus
vv       DEL PEAK 10(5Q35.2) MUTATED DEL PEAK 10(5Q35.2) WILD-TYPE
  CLUS_1                          17                            54
  CLUS_2                          13                            41
  CLUS_3                          14                            43
  CLUS_4                          15                            44
  CLUS_5                           3                             6
  CLUS_6                           9                            36
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(5Q35.2) MUTATED       20     13     18
  DEL PEAK 10(5Q35.2) WILD-TYPE     33     29     51
D38V3, multiclass
        clus
vv       DEL PEAK 10(5Q35.2) MUTATED DEL PEAK 10(5Q35.2) WILD-TYPE
  CLUS_1                          20                            33
  CLUS_2                          13                            29
  CLUS_3                          18                            51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(5Q35.2) MUTATED       12     11     13      8      7
  DEL PEAK 10(5Q35.2) WILD-TYPE     20     36     32     15     10
D38V4, multiclass
        clus
vv       DEL PEAK 10(5Q35.2) MUTATED DEL PEAK 10(5Q35.2) WILD-TYPE
  CLUS_1                          12                            20
  CLUS_2                          11                            36
  CLUS_3                          13                            32
  CLUS_4                           8                            15
  CLUS_5                           7                            10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(5Q35.2) MUTATED       12     26     14     17
  DEL PEAK 10(5Q35.2) WILD-TYPE     42     74     55     52
D38V5, multiclass
        clus
vv       DEL PEAK 10(5Q35.2) MUTATED DEL PEAK 10(5Q35.2) WILD-TYPE
  CLUS_1                          12                            42
  CLUS_2                          26                            74
  CLUS_3                          14                            55
  CLUS_4                          17                            52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(5Q35.2) MUTATED       16     46      7
  DEL PEAK 10(5Q35.2) WILD-TYPE     56    139     28
D38V6, multiclass
        clus
vv       DEL PEAK 10(5Q35.2) MUTATED DEL PEAK 10(5Q35.2) WILD-TYPE
  CLUS_1                          16                            56
  CLUS_2                          46                           139
  CLUS_3                           7                            28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(5Q35.2) MUTATED       17     16     38
  DEL PEAK 10(5Q35.2) WILD-TYPE     82     61     81
D38V7, multiclass
        clus
vv       DEL PEAK 10(5Q35.2) MUTATED DEL PEAK 10(5Q35.2) WILD-TYPE
  CLUS_1                          17                            82
  CLUS_2                          16                            61
  CLUS_3                          38                            81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(5Q35.2) MUTATED       12     20     18      7     14
  DEL PEAK 10(5Q35.2) WILD-TYPE     48     75     54     18     29
D38V8, multiclass
        clus
vv       DEL PEAK 10(5Q35.2) MUTATED DEL PEAK 10(5Q35.2) WILD-TYPE
  CLUS_1                          12                            48
  CLUS_2                          20                            75
  CLUS_3                          18                            54
  CLUS_4                           7                            18
  CLUS_5                          14                            29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(5Q35.2) MUTATED       31     15     22
  DEL PEAK 10(5Q35.2) WILD-TYPE     94     62     58
D38V9, multiclass
        clus
vv       DEL PEAK 10(5Q35.2) MUTATED DEL PEAK 10(5Q35.2) WILD-TYPE
  CLUS_1                          31                            94
  CLUS_2                          15                            62
  CLUS_3                          22                            58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(5Q35.2) MUTATED       12     13     11     32
  DEL PEAK 10(5Q35.2) WILD-TYPE     52     37     15    110
D38V10, multiclass
        clus
vv       DEL PEAK 10(5Q35.2) MUTATED DEL PEAK 10(5Q35.2) WILD-TYPE
  CLUS_1                          12                            52
  CLUS_2                          13                            37
  CLUS_3                          11                            15
  CLUS_4                          32                           110
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(39) Variable = DEL PEAK 11(6P24.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6P24.2) MUTATED       24     12     10
  DEL PEAK 11(6P24.2) WILD-TYPE    105     61     83
D39V1, multiclass
        clus
vv       DEL PEAK 11(6P24.2) MUTATED DEL PEAK 11(6P24.2) WILD-TYPE
  CLUS_1                          24                           105
  CLUS_2                          12                            61
  CLUS_3                          10                            83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(6P24.2) MUTATED        5     14      8      9      1      9
  DEL PEAK 11(6P24.2) WILD-TYPE     66     40     49     50      8     36
D39V2, multiclass
        clus
vv       DEL PEAK 11(6P24.2) MUTATED DEL PEAK 11(6P24.2) WILD-TYPE
  CLUS_1                           5                            66
  CLUS_2                          14                            40
  CLUS_3                           8                            49
  CLUS_4                           9                            50
  CLUS_5                           1                             8
  CLUS_6                           9                            36
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6P24.2) MUTATED        6      9     13
  DEL PEAK 11(6P24.2) WILD-TYPE     47     33     56
D39V3, multiclass
        clus
vv       DEL PEAK 11(6P24.2) MUTATED DEL PEAK 11(6P24.2) WILD-TYPE
  CLUS_1                           6                            47
  CLUS_2                           9                            33
  CLUS_3                          13                            56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(6P24.2) MUTATED        2     10     11      2      3
  DEL PEAK 11(6P24.2) WILD-TYPE     30     37     34     21     14
D39V4, multiclass
        clus
vv       DEL PEAK 11(6P24.2) MUTATED DEL PEAK 11(6P24.2) WILD-TYPE
  CLUS_1                           2                            30
  CLUS_2                          10                            37
  CLUS_3                          11                            34
  CLUS_4                           2                            21
  CLUS_5                           3                            14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(6P24.2) MUTATED        7     23      7      9
  DEL PEAK 11(6P24.2) WILD-TYPE     47     77     62     60
D39V5, multiclass
        clus
vv       DEL PEAK 11(6P24.2) MUTATED DEL PEAK 11(6P24.2) WILD-TYPE
  CLUS_1                           7                            47
  CLUS_2                          23                            77
  CLUS_3                           7                            62
  CLUS_4                           9                            60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6P24.2) MUTATED        5     36      5
  DEL PEAK 11(6P24.2) WILD-TYPE     67    149     30
D39V6, multiclass
        clus
vv       DEL PEAK 11(6P24.2) MUTATED DEL PEAK 11(6P24.2) WILD-TYPE
  CLUS_1                           5                            67
  CLUS_2                          36                           149
  CLUS_3                           5                            30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6P24.2) MUTATED       12     16     18
  DEL PEAK 11(6P24.2) WILD-TYPE     87     61    101
D39V7, multiclass
        clus
vv       DEL PEAK 11(6P24.2) MUTATED DEL PEAK 11(6P24.2) WILD-TYPE
  CLUS_1                          12                            87
  CLUS_2                          16                            61
  CLUS_3                          18                           101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(6P24.2) MUTATED        4     22     12      5      3
  DEL PEAK 11(6P24.2) WILD-TYPE     56     73     60     20     40
D39V8, multiclass
        clus
vv       DEL PEAK 11(6P24.2) MUTATED DEL PEAK 11(6P24.2) WILD-TYPE
  CLUS_1                           4                            56
  CLUS_2                          22                            73
  CLUS_3                          12                            60
  CLUS_4                           5                            20
  CLUS_5                           3                            40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6P24.2) MUTATED       14     14     16
  DEL PEAK 11(6P24.2) WILD-TYPE    111     63     64
D39V9, multiclass
        clus
vv       DEL PEAK 11(6P24.2) MUTATED DEL PEAK 11(6P24.2) WILD-TYPE
  CLUS_1                          14                           111
  CLUS_2                          14                            63
  CLUS_3                          16                            64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(6P24.2) MUTATED        5     11      2     26
  DEL PEAK 11(6P24.2) WILD-TYPE     59     39     24    116
D39V10, multiclass
        clus
vv       DEL PEAK 11(6P24.2) MUTATED DEL PEAK 11(6P24.2) WILD-TYPE
  CLUS_1                           5                            59
  CLUS_2                          11                            39
  CLUS_3                           2                            24
  CLUS_4                          26                           116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(40) Variable = DEL PEAK 12(6Q26) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6Q26) MUTATED       39     43     18
  DEL PEAK 12(6Q26) WILD-TYPE     90     30     75
D40V1, multiclass
        clus
vv       DEL PEAK 12(6Q26) MUTATED DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                        39                          90
  CLUS_2                        43                          30
  CLUS_3                        18                          75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(6Q26) MUTATED       18     27     16     27      4      8
  DEL PEAK 12(6Q26) WILD-TYPE     53     27     41     32      5     37
D40V2, multiclass
        clus
vv       DEL PEAK 12(6Q26) MUTATED DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                        18                          53
  CLUS_2                        27                          27
  CLUS_3                        16                          41
  CLUS_4                        27                          32
  CLUS_5                         4                           5
  CLUS_6                         8                          37
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6Q26) MUTATED       16     17     22
  DEL PEAK 12(6Q26) WILD-TYPE     37     25     47
D40V3, multiclass
        clus
vv       DEL PEAK 12(6Q26) MUTATED DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                        16                          37
  CLUS_2                        17                          25
  CLUS_3                        22                          47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(6Q26) MUTATED        8     16     17      7      7
  DEL PEAK 12(6Q26) WILD-TYPE     24     31     28     16     10
D40V4, multiclass
        clus
vv       DEL PEAK 12(6Q26) MUTATED DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                         8                          24
  CLUS_2                        16                          31
  CLUS_3                        17                          28
  CLUS_4                         7                          16
  CLUS_5                         7                          10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(6Q26) MUTATED       13     36     23     28
  DEL PEAK 12(6Q26) WILD-TYPE     41     64     46     41
D40V5, multiclass
        clus
vv       DEL PEAK 12(6Q26) MUTATED DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                        13                          41
  CLUS_2                        36                          64
  CLUS_3                        23                          46
  CLUS_4                        28                          41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6Q26) MUTATED       18     66     16
  DEL PEAK 12(6Q26) WILD-TYPE     54    119     19
D40V6, multiclass
        clus
vv       DEL PEAK 12(6Q26) MUTATED DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                        18                          54
  CLUS_2                        66                         119
  CLUS_3                        16                          19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6Q26) MUTATED       28     27     45
  DEL PEAK 12(6Q26) WILD-TYPE     71     50     74
D40V7, multiclass
        clus
vv       DEL PEAK 12(6Q26) MUTATED DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                        28                          71
  CLUS_2                        27                          50
  CLUS_3                        45                          74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(6Q26) MUTATED       15     33     23     11     18
  DEL PEAK 12(6Q26) WILD-TYPE     45     62     49     14     25
D40V8, multiclass
        clus
vv       DEL PEAK 12(6Q26) MUTATED DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                        15                          45
  CLUS_2                        33                          62
  CLUS_3                        23                          49
  CLUS_4                        11                          14
  CLUS_5                        18                          25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6Q26) MUTATED       38     24     34
  DEL PEAK 12(6Q26) WILD-TYPE     87     53     46
D40V9, multiclass
        clus
vv       DEL PEAK 12(6Q26) MUTATED DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                        38                          87
  CLUS_2                        24                          53
  CLUS_3                        34                          46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(6Q26) MUTATED       16     15     10     55
  DEL PEAK 12(6Q26) WILD-TYPE     48     35     16     87
D40V10, multiclass
        clus
vv       DEL PEAK 12(6Q26) MUTATED DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                        16                          48
  CLUS_2                        15                          35
  CLUS_3                        10                          16
  CLUS_4                        55                          87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(41) Variable = DEL PEAK 13(7Q34) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(7Q34) MUTATED       14     23     23
  DEL PEAK 13(7Q34) WILD-TYPE    115     50     70
D41V1, multiclass
        clus
vv       DEL PEAK 13(7Q34) MUTATED DEL PEAK 13(7Q34) WILD-TYPE
  CLUS_1                        14                         115
  CLUS_2                        23                          50
  CLUS_3                        23                          70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(7Q34) MUTATED       17      9      9     17      0      8
  DEL PEAK 13(7Q34) WILD-TYPE     54     45     48     42      9     37
D41V2, multiclass
        clus
vv       DEL PEAK 13(7Q34) MUTATED DEL PEAK 13(7Q34) WILD-TYPE
  CLUS_1                        17                          54
  CLUS_2                         9                          45
  CLUS_3                         9                          48
  CLUS_4                        17                          42
  CLUS_5                         0                           9
  CLUS_6                         8                          37
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(7Q34) MUTATED       14      6     16
  DEL PEAK 13(7Q34) WILD-TYPE     39     36     53
D41V3, multiclass
        clus
vv       DEL PEAK 13(7Q34) MUTATED DEL PEAK 13(7Q34) WILD-TYPE
  CLUS_1                        14                          39
  CLUS_2                         6                          36
  CLUS_3                        16                          53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(7Q34) MUTATED        9      8      8      5      6
  DEL PEAK 13(7Q34) WILD-TYPE     23     39     37     18     11
D41V4, multiclass
        clus
vv       DEL PEAK 13(7Q34) MUTATED DEL PEAK 13(7Q34) WILD-TYPE
  CLUS_1                         9                          23
  CLUS_2                         8                          39
  CLUS_3                         8                          37
  CLUS_4                         5                          18
  CLUS_5                         6                          11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(7Q34) MUTATED        9     21     13     16
  DEL PEAK 13(7Q34) WILD-TYPE     45     79     56     53
D41V5, multiclass
        clus
vv       DEL PEAK 13(7Q34) MUTATED DEL PEAK 13(7Q34) WILD-TYPE
  CLUS_1                         9                          45
  CLUS_2                        21                          79
  CLUS_3                        13                          56
  CLUS_4                        16                          53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(7Q34) MUTATED       17     35      7
  DEL PEAK 13(7Q34) WILD-TYPE     55    150     28
D41V6, multiclass
        clus
vv       DEL PEAK 13(7Q34) MUTATED DEL PEAK 13(7Q34) WILD-TYPE
  CLUS_1                        17                          55
  CLUS_2                        35                         150
  CLUS_3                         7                          28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(7Q34) MUTATED       21     13     26
  DEL PEAK 13(7Q34) WILD-TYPE     78     64     93
D41V7, multiclass
        clus
vv       DEL PEAK 13(7Q34) MUTATED DEL PEAK 13(7Q34) WILD-TYPE
  CLUS_1                        21                          78
  CLUS_2                        13                          64
  CLUS_3                        26                          93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(7Q34) MUTATED       14     16     15      3     12
  DEL PEAK 13(7Q34) WILD-TYPE     46     79     57     22     31
D41V8, multiclass
        clus
vv       DEL PEAK 13(7Q34) MUTATED DEL PEAK 13(7Q34) WILD-TYPE
  CLUS_1                        14                          46
  CLUS_2                        16                          79
  CLUS_3                        15                          57
  CLUS_4                         3                          22
  CLUS_5                        12                          31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(7Q34) MUTATED       26     13     17
  DEL PEAK 13(7Q34) WILD-TYPE     99     64     63
D41V9, multiclass
        clus
vv       DEL PEAK 13(7Q34) MUTATED DEL PEAK 13(7Q34) WILD-TYPE
  CLUS_1                        26                          99
  CLUS_2                        13                          64
  CLUS_3                        17                          63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(7Q34) MUTATED       14     12      6     24
  DEL PEAK 13(7Q34) WILD-TYPE     50     38     20    118
D41V10, multiclass
        clus
vv       DEL PEAK 13(7Q34) MUTATED DEL PEAK 13(7Q34) WILD-TYPE
  CLUS_1                        14                          50
  CLUS_2                        12                          38
  CLUS_3                         6                          20
  CLUS_4                        24                         118
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(42) Variable = DEL PEAK 14(8P23.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(8P23.3) MUTATED       28     42     34
  DEL PEAK 14(8P23.3) WILD-TYPE    101     31     59
D42V1, multiclass
        clus
vv       DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE
  CLUS_1                          28                           101
  CLUS_2                          42                            31
  CLUS_3                          34                            59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(8P23.3) MUTATED       27     15     12     29      4     17
  DEL PEAK 14(8P23.3) WILD-TYPE     44     39     45     30      5     28
D42V2, multiclass
        clus
vv       DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE
  CLUS_1                          27                            44
  CLUS_2                          15                            39
  CLUS_3                          12                            45
  CLUS_4                          29                            30
  CLUS_5                           4                             5
  CLUS_6                          17                            28
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(8P23.3) MUTATED       16     20     23
  DEL PEAK 14(8P23.3) WILD-TYPE     37     22     46
D42V3, multiclass
        clus
vv       DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE
  CLUS_1                          16                            37
  CLUS_2                          20                            22
  CLUS_3                          23                            46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(8P23.3) MUTATED        6     16     17     11      9
  DEL PEAK 14(8P23.3) WILD-TYPE     26     31     28     12      8
D42V4, multiclass
        clus
vv       DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE
  CLUS_1                           6                            26
  CLUS_2                          16                            31
  CLUS_3                          17                            28
  CLUS_4                          11                            12
  CLUS_5                           9                             8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(8P23.3) MUTATED       23     22     23     36
  DEL PEAK 14(8P23.3) WILD-TYPE     31     78     46     33
D42V5, multiclass
        clus
vv       DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE
  CLUS_1                          23                            31
  CLUS_2                          22                            78
  CLUS_3                          23                            46
  CLUS_4                          36                            33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(8P23.3) MUTATED       28     57     19
  DEL PEAK 14(8P23.3) WILD-TYPE     44    128     16
D42V6, multiclass
        clus
vv       DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE
  CLUS_1                          28                            44
  CLUS_2                          57                           128
  CLUS_3                          19                            16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(8P23.3) MUTATED       38     19     47
  DEL PEAK 14(8P23.3) WILD-TYPE     61     58     72
D42V7, multiclass
        clus
vv       DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE
  CLUS_1                          38                            61
  CLUS_2                          19                            58
  CLUS_3                          47                            72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(8P23.3) MUTATED       24     26     20     11     23
  DEL PEAK 14(8P23.3) WILD-TYPE     36     69     52     14     20
D42V8, multiclass
        clus
vv       DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE
  CLUS_1                          24                            36
  CLUS_2                          26                            69
  CLUS_3                          20                            52
  CLUS_4                          11                            14
  CLUS_5                          23                            20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(8P23.3) MUTATED       48     19     35
  DEL PEAK 14(8P23.3) WILD-TYPE     77     58     45
D42V9, multiclass
        clus
vv       DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE
  CLUS_1                          48                            77
  CLUS_2                          19                            58
  CLUS_3                          35                            45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(8P23.3) MUTATED       24     12     12     54
  DEL PEAK 14(8P23.3) WILD-TYPE     40     38     14     88
D42V10, multiclass
        clus
vv       DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE
  CLUS_1                          24                            40
  CLUS_2                          12                            38
  CLUS_3                          12                            14
  CLUS_4                          54                            88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(43) Variable = DEL PEAK 15(8P23.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(8P23.1) MUTATED       28     39     30
  DEL PEAK 15(8P23.1) WILD-TYPE    101     34     63
D43V1, multiclass
        clus
vv       DEL PEAK 15(8P23.1) MUTATED DEL PEAK 15(8P23.1) WILD-TYPE
  CLUS_1                          28                           101
  CLUS_2                          39                            34
  CLUS_3                          30                            63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(8P23.1) MUTATED       25     14     10     26      5     17
  DEL PEAK 15(8P23.1) WILD-TYPE     46     40     47     33      4     28
D43V2, multiclass
        clus
vv       DEL PEAK 15(8P23.1) MUTATED DEL PEAK 15(8P23.1) WILD-TYPE
  CLUS_1                          25                            46
  CLUS_2                          14                            40
  CLUS_3                          10                            47
  CLUS_4                          26                            33
  CLUS_5                           5                             4
  CLUS_6                          17                            28
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(8P23.1) MUTATED       16     18     23
  DEL PEAK 15(8P23.1) WILD-TYPE     37     24     46
D43V3, multiclass
        clus
vv       DEL PEAK 15(8P23.1) MUTATED DEL PEAK 15(8P23.1) WILD-TYPE
  CLUS_1                          16                            37
  CLUS_2                          18                            24
  CLUS_3                          23                            46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(8P23.1) MUTATED        6     16     15     11      9
  DEL PEAK 15(8P23.1) WILD-TYPE     26     31     30     12      8
D43V4, multiclass
        clus
vv       DEL PEAK 15(8P23.1) MUTATED DEL PEAK 15(8P23.1) WILD-TYPE
  CLUS_1                           6                            26
  CLUS_2                          16                            31
  CLUS_3                          15                            30
  CLUS_4                          11                            12
  CLUS_5                           9                             8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(8P23.1) MUTATED       22     21     22     32
  DEL PEAK 15(8P23.1) WILD-TYPE     32     79     47     37
D43V5, multiclass
        clus
vv       DEL PEAK 15(8P23.1) MUTATED DEL PEAK 15(8P23.1) WILD-TYPE
  CLUS_1                          22                            32
  CLUS_2                          21                            79
  CLUS_3                          22                            47
  CLUS_4                          32                            37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(8P23.1) MUTATED       26     55     16
  DEL PEAK 15(8P23.1) WILD-TYPE     46    130     19
D43V6, multiclass
        clus
vv       DEL PEAK 15(8P23.1) MUTATED DEL PEAK 15(8P23.1) WILD-TYPE
  CLUS_1                          26                            46
  CLUS_2                          55                           130
  CLUS_3                          16                            19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(8P23.1) MUTATED       35     16     46
  DEL PEAK 15(8P23.1) WILD-TYPE     64     61     73
D43V7, multiclass
        clus
vv       DEL PEAK 15(8P23.1) MUTATED DEL PEAK 15(8P23.1) WILD-TYPE
  CLUS_1                          35                            64
  CLUS_2                          16                            61
  CLUS_3                          46                            73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(8P23.1) MUTATED       22     26     17     10     22
  DEL PEAK 15(8P23.1) WILD-TYPE     38     69     55     15     21
D43V8, multiclass
        clus
vv       DEL PEAK 15(8P23.1) MUTATED DEL PEAK 15(8P23.1) WILD-TYPE
  CLUS_1                          22                            38
  CLUS_2                          26                            69
  CLUS_3                          17                            55
  CLUS_4                          10                            15
  CLUS_5                          22                            21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(8P23.1) MUTATED       43     17     36
  DEL PEAK 15(8P23.1) WILD-TYPE     82     60     44
D43V9, multiclass
        clus
vv       DEL PEAK 15(8P23.1) MUTATED DEL PEAK 15(8P23.1) WILD-TYPE
  CLUS_1                          43                            82
  CLUS_2                          17                            60
  CLUS_3                          36                            44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(8P23.1) MUTATED       22     10     12     52
  DEL PEAK 15(8P23.1) WILD-TYPE     42     40     14     90
D43V10, multiclass
        clus
vv       DEL PEAK 15(8P23.1) MUTATED DEL PEAK 15(8P23.1) WILD-TYPE
  CLUS_1                          22                            42
  CLUS_2                          10                            40
  CLUS_3                          12                            14
  CLUS_4                          52                            90
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(44) Variable = DEL PEAK 16(10Q23.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(10Q23.31) MUTATED       30     32     24
  DEL PEAK 16(10Q23.31) WILD-TYPE     99     41     69
D44V1, multiclass
        clus
vv       DEL PEAK 16(10Q23.31) MUTATED DEL PEAK 16(10Q23.31) WILD-TYPE
  CLUS_1                            30                              99
  CLUS_2                            32                              41
  CLUS_3                            24                              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(10Q23.31) MUTATED       25     14     12     20      3     12
  DEL PEAK 16(10Q23.31) WILD-TYPE     46     40     45     39      6     33
D44V2, multiclass
        clus
vv       DEL PEAK 16(10Q23.31) MUTATED DEL PEAK 16(10Q23.31) WILD-TYPE
  CLUS_1                            25                              46
  CLUS_2                            14                              40
  CLUS_3                            12                              45
  CLUS_4                            20                              39
  CLUS_5                             3                               6
  CLUS_6                            12                              33
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(10Q23.31) MUTATED       13     16     16
  DEL PEAK 16(10Q23.31) WILD-TYPE     40     26     53
D44V3, multiclass
        clus
vv       DEL PEAK 16(10Q23.31) MUTATED DEL PEAK 16(10Q23.31) WILD-TYPE
  CLUS_1                            13                              40
  CLUS_2                            16                              26
  CLUS_3                            16                              53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(10Q23.31) MUTATED        7     11     14      8      5
  DEL PEAK 16(10Q23.31) WILD-TYPE     25     36     31     15     12
D44V4, multiclass
        clus
vv       DEL PEAK 16(10Q23.31) MUTATED DEL PEAK 16(10Q23.31) WILD-TYPE
  CLUS_1                             7                              25
  CLUS_2                            11                              36
  CLUS_3                            14                              31
  CLUS_4                             8                              15
  CLUS_5                             5                              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(10Q23.31) MUTATED       24     23     18     21
  DEL PEAK 16(10Q23.31) WILD-TYPE     30     77     51     48
D44V5, multiclass
        clus
vv       DEL PEAK 16(10Q23.31) MUTATED DEL PEAK 16(10Q23.31) WILD-TYPE
  CLUS_1                            24                              30
  CLUS_2                            23                              77
  CLUS_3                            18                              51
  CLUS_4                            21                              48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(10Q23.31) MUTATED       25     49     12
  DEL PEAK 16(10Q23.31) WILD-TYPE     47    136     23
D44V6, multiclass
        clus
vv       DEL PEAK 16(10Q23.31) MUTATED DEL PEAK 16(10Q23.31) WILD-TYPE
  CLUS_1                            25                              47
  CLUS_2                            49                             136
  CLUS_3                            12                              23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(10Q23.31) MUTATED       28     22     36
  DEL PEAK 16(10Q23.31) WILD-TYPE     71     55     83
D44V7, multiclass
        clus
vv       DEL PEAK 16(10Q23.31) MUTATED DEL PEAK 16(10Q23.31) WILD-TYPE
  CLUS_1                            28                              71
  CLUS_2                            22                              55
  CLUS_3                            36                              83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(10Q23.31) MUTATED       20     25     16     11     14
  DEL PEAK 16(10Q23.31) WILD-TYPE     40     70     56     14     29
D44V8, multiclass
        clus
vv       DEL PEAK 16(10Q23.31) MUTATED DEL PEAK 16(10Q23.31) WILD-TYPE
  CLUS_1                            20                              40
  CLUS_2                            25                              70
  CLUS_3                            16                              56
  CLUS_4                            11                              14
  CLUS_5                            14                              29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(10Q23.31) MUTATED       37     21     25
  DEL PEAK 16(10Q23.31) WILD-TYPE     88     56     55
D44V9, multiclass
        clus
vv       DEL PEAK 16(10Q23.31) MUTATED DEL PEAK 16(10Q23.31) WILD-TYPE
  CLUS_1                            37                              88
  CLUS_2                            21                              56
  CLUS_3                            25                              55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(10Q23.31) MUTATED       23     14      8     38
  DEL PEAK 16(10Q23.31) WILD-TYPE     41     36     18    104
D44V10, multiclass
        clus
vv       DEL PEAK 16(10Q23.31) MUTATED DEL PEAK 16(10Q23.31) WILD-TYPE
  CLUS_1                            23                              41
  CLUS_2                            14                              36
  CLUS_3                             8                              18
  CLUS_4                            38                             104
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(45) Variable = DEL PEAK 17(11P15.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(11P15.1) MUTATED       30     34     38
  DEL PEAK 17(11P15.1) WILD-TYPE     99     39     55
D45V1, multiclass
        clus
vv       DEL PEAK 17(11P15.1) MUTATED DEL PEAK 17(11P15.1) WILD-TYPE
  CLUS_1                           30                             99
  CLUS_2                           34                             39
  CLUS_3                           38                             55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(11P15.1) MUTATED       17     24     21     24      3     13
  DEL PEAK 17(11P15.1) WILD-TYPE     54     30     36     35      6     32
D45V2, multiclass
        clus
vv       DEL PEAK 17(11P15.1) MUTATED DEL PEAK 17(11P15.1) WILD-TYPE
  CLUS_1                           17                             54
  CLUS_2                           24                             30
  CLUS_3                           21                             36
  CLUS_4                           24                             35
  CLUS_5                            3                              6
  CLUS_6                           13                             32
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(11P15.1) MUTATED       11     19     20
  DEL PEAK 17(11P15.1) WILD-TYPE     42     23     49
D45V3, multiclass
        clus
vv       DEL PEAK 17(11P15.1) MUTATED DEL PEAK 17(11P15.1) WILD-TYPE
  CLUS_1                           11                             42
  CLUS_2                           19                             23
  CLUS_3                           20                             49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(11P15.1) MUTATED        5      9     19      8      9
  DEL PEAK 17(11P15.1) WILD-TYPE     27     38     26     15      8
D45V4, multiclass
        clus
vv       DEL PEAK 17(11P15.1) MUTATED DEL PEAK 17(11P15.1) WILD-TYPE
  CLUS_1                            5                             27
  CLUS_2                            9                             38
  CLUS_3                           19                             26
  CLUS_4                            8                             15
  CLUS_5                            9                              8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(11P15.1) MUTATED       21     40     14     27
  DEL PEAK 17(11P15.1) WILD-TYPE     33     60     55     42
D45V5, multiclass
        clus
vv       DEL PEAK 17(11P15.1) MUTATED DEL PEAK 17(11P15.1) WILD-TYPE
  CLUS_1                           21                             33
  CLUS_2                           40                             60
  CLUS_3                           14                             55
  CLUS_4                           27                             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(11P15.1) MUTATED       16     75     11
  DEL PEAK 17(11P15.1) WILD-TYPE     56    110     24
D45V6, multiclass
        clus
vv       DEL PEAK 17(11P15.1) MUTATED DEL PEAK 17(11P15.1) WILD-TYPE
  CLUS_1                           16                             56
  CLUS_2                           75                            110
  CLUS_3                           11                             24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(11P15.1) MUTATED       28     29     45
  DEL PEAK 17(11P15.1) WILD-TYPE     71     48     74
D45V7, multiclass
        clus
vv       DEL PEAK 17(11P15.1) MUTATED DEL PEAK 17(11P15.1) WILD-TYPE
  CLUS_1                           28                             71
  CLUS_2                           29                             48
  CLUS_3                           45                             74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(11P15.1) MUTATED       12     39     28      9     14
  DEL PEAK 17(11P15.1) WILD-TYPE     48     56     44     16     29
D45V8, multiclass
        clus
vv       DEL PEAK 17(11P15.1) MUTATED DEL PEAK 17(11P15.1) WILD-TYPE
  CLUS_1                           12                             48
  CLUS_2                           39                             56
  CLUS_3                           28                             44
  CLUS_4                            9                             16
  CLUS_5                           14                             29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(11P15.1) MUTATED       44     26     28
  DEL PEAK 17(11P15.1) WILD-TYPE     81     51     52
D45V9, multiclass
        clus
vv       DEL PEAK 17(11P15.1) MUTATED DEL PEAK 17(11P15.1) WILD-TYPE
  CLUS_1                           44                             81
  CLUS_2                           26                             51
  CLUS_3                           28                             52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(11P15.1) MUTATED       15     17     11     55
  DEL PEAK 17(11P15.1) WILD-TYPE     49     33     15     87
D45V10, multiclass
        clus
vv       DEL PEAK 17(11P15.1) MUTATED DEL PEAK 17(11P15.1) WILD-TYPE
  CLUS_1                           15                             49
  CLUS_2                           17                             33
  CLUS_3                           11                             15
  CLUS_4                           55                             87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(46) Variable = DEL PEAK 18(11Q23.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(11Q23.3) MUTATED       49     42     71
  DEL PEAK 18(11Q23.3) WILD-TYPE     80     31     22
D46V1, multiclass
        clus
vv       DEL PEAK 18(11Q23.3) MUTATED DEL PEAK 18(11Q23.3) WILD-TYPE
  CLUS_1                           49                             80
  CLUS_2                           42                             31
  CLUS_3                           71                             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(11Q23.3) MUTATED       29     31     33     35      5     29
  DEL PEAK 18(11Q23.3) WILD-TYPE     42     23     24     24      4     16
D46V2, multiclass
        clus
vv       DEL PEAK 18(11Q23.3) MUTATED DEL PEAK 18(11Q23.3) WILD-TYPE
  CLUS_1                           29                             42
  CLUS_2                           31                             23
  CLUS_3                           33                             24
  CLUS_4                           35                             24
  CLUS_5                            5                              4
  CLUS_6                           29                             16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(11Q23.3) MUTATED       26     20     41
  DEL PEAK 18(11Q23.3) WILD-TYPE     27     22     28
D46V3, multiclass
        clus
vv       DEL PEAK 18(11Q23.3) MUTATED DEL PEAK 18(11Q23.3) WILD-TYPE
  CLUS_1                           26                             27
  CLUS_2                           20                             22
  CLUS_3                           41                             28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(11Q23.3) MUTATED       13     26     24     17      7
  DEL PEAK 18(11Q23.3) WILD-TYPE     19     21     21      6     10
D46V4, multiclass
        clus
vv       DEL PEAK 18(11Q23.3) MUTATED DEL PEAK 18(11Q23.3) WILD-TYPE
  CLUS_1                           13                             19
  CLUS_2                           26                             21
  CLUS_3                           24                             21
  CLUS_4                           17                              6
  CLUS_5                            7                             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(11Q23.3) MUTATED       34     60     28     37
  DEL PEAK 18(11Q23.3) WILD-TYPE     20     40     41     32
D46V5, multiclass
        clus
vv       DEL PEAK 18(11Q23.3) MUTATED DEL PEAK 18(11Q23.3) WILD-TYPE
  CLUS_1                           34                             20
  CLUS_2                           60                             40
  CLUS_3                           28                             41
  CLUS_4                           37                             32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(11Q23.3) MUTATED       27    112     20
  DEL PEAK 18(11Q23.3) WILD-TYPE     45     73     15
D46V6, multiclass
        clus
vv       DEL PEAK 18(11Q23.3) MUTATED DEL PEAK 18(11Q23.3) WILD-TYPE
  CLUS_1                           27                             45
  CLUS_2                          112                             73
  CLUS_3                           20                             15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(11Q23.3) MUTATED       53     41     68
  DEL PEAK 18(11Q23.3) WILD-TYPE     46     36     51
D46V7, multiclass
        clus
vv       DEL PEAK 18(11Q23.3) MUTATED DEL PEAK 18(11Q23.3) WILD-TYPE
  CLUS_1                           53                             46
  CLUS_2                           41                             36
  CLUS_3                           68                             51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(11Q23.3) MUTATED       21     63     43     11     24
  DEL PEAK 18(11Q23.3) WILD-TYPE     39     32     29     14     19
D46V8, multiclass
        clus
vv       DEL PEAK 18(11Q23.3) MUTATED DEL PEAK 18(11Q23.3) WILD-TYPE
  CLUS_1                           21                             39
  CLUS_2                           63                             32
  CLUS_3                           43                             29
  CLUS_4                           11                             14
  CLUS_5                           24                             19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(11Q23.3) MUTATED       65     39     52
  DEL PEAK 18(11Q23.3) WILD-TYPE     60     38     28
D46V9, multiclass
        clus
vv       DEL PEAK 18(11Q23.3) MUTATED DEL PEAK 18(11Q23.3) WILD-TYPE
  CLUS_1                           65                             60
  CLUS_2                           39                             38
  CLUS_3                           52                             28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(11Q23.3) MUTATED       25     29     20     82
  DEL PEAK 18(11Q23.3) WILD-TYPE     39     21      6     60
D46V10, multiclass
        clus
vv       DEL PEAK 18(11Q23.3) MUTATED DEL PEAK 18(11Q23.3) WILD-TYPE
  CLUS_1                           25                             39
  CLUS_2                           29                             21
  CLUS_3                           20                              6
  CLUS_4                           82                             60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(47) Variable = DEL PEAK 19(11Q25) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(11Q25) MUTATED       45     45     70
  DEL PEAK 19(11Q25) WILD-TYPE     84     28     23
D47V1, multiclass
        clus
vv       DEL PEAK 19(11Q25) MUTATED DEL PEAK 19(11Q25) WILD-TYPE
  CLUS_1                         45                           84
  CLUS_2                         45                           28
  CLUS_3                         70                           23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(11Q25) MUTATED       29     31     31     35      5     29
  DEL PEAK 19(11Q25) WILD-TYPE     42     23     26     24      4     16
D47V2, multiclass
        clus
vv       DEL PEAK 19(11Q25) MUTATED DEL PEAK 19(11Q25) WILD-TYPE
  CLUS_1                         29                           42
  CLUS_2                         31                           23
  CLUS_3                         31                           26
  CLUS_4                         35                           24
  CLUS_5                          5                            4
  CLUS_6                         29                           16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(11Q25) MUTATED       27     21     40
  DEL PEAK 19(11Q25) WILD-TYPE     26     21     29
D47V3, multiclass
        clus
vv       DEL PEAK 19(11Q25) MUTATED DEL PEAK 19(11Q25) WILD-TYPE
  CLUS_1                         27                           26
  CLUS_2                         21                           21
  CLUS_3                         40                           29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(11Q25) MUTATED       13     26     23     17      9
  DEL PEAK 19(11Q25) WILD-TYPE     19     21     22      6      8
D47V4, multiclass
        clus
vv       DEL PEAK 19(11Q25) MUTATED DEL PEAK 19(11Q25) WILD-TYPE
  CLUS_1                         13                           19
  CLUS_2                         26                           21
  CLUS_3                         23                           22
  CLUS_4                         17                            6
  CLUS_5                          9                            8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(11Q25) MUTATED       32     61     27     38
  DEL PEAK 19(11Q25) WILD-TYPE     22     39     42     31
D47V5, multiclass
        clus
vv       DEL PEAK 19(11Q25) MUTATED DEL PEAK 19(11Q25) WILD-TYPE
  CLUS_1                         32                           22
  CLUS_2                         61                           39
  CLUS_3                         27                           42
  CLUS_4                         38                           31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(11Q25) MUTATED       27    110     21
  DEL PEAK 19(11Q25) WILD-TYPE     45     75     14
D47V6, multiclass
        clus
vv       DEL PEAK 19(11Q25) MUTATED DEL PEAK 19(11Q25) WILD-TYPE
  CLUS_1                         27                           45
  CLUS_2                        110                           75
  CLUS_3                         21                           14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(11Q25) MUTATED       50     41     69
  DEL PEAK 19(11Q25) WILD-TYPE     49     36     50
D47V7, multiclass
        clus
vv       DEL PEAK 19(11Q25) MUTATED DEL PEAK 19(11Q25) WILD-TYPE
  CLUS_1                         50                           49
  CLUS_2                         41                           36
  CLUS_3                         69                           50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(11Q25) MUTATED       21     61     42     11     25
  DEL PEAK 19(11Q25) WILD-TYPE     39     34     30     14     18
D47V8, multiclass
        clus
vv       DEL PEAK 19(11Q25) MUTATED DEL PEAK 19(11Q25) WILD-TYPE
  CLUS_1                         21                           39
  CLUS_2                         61                           34
  CLUS_3                         42                           30
  CLUS_4                         11                           14
  CLUS_5                         25                           18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(11Q25) MUTATED       63     38     52
  DEL PEAK 19(11Q25) WILD-TYPE     62     39     28
D47V9, multiclass
        clus
vv       DEL PEAK 19(11Q25) MUTATED DEL PEAK 19(11Q25) WILD-TYPE
  CLUS_1                         63                           62
  CLUS_2                         38                           39
  CLUS_3                         52                           28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(11Q25) MUTATED       25     28     20     80
  DEL PEAK 19(11Q25) WILD-TYPE     39     22      6     62
D47V10, multiclass
        clus
vv       DEL PEAK 19(11Q25) MUTATED DEL PEAK 19(11Q25) WILD-TYPE
  CLUS_1                         25                           39
  CLUS_2                         28                           22
  CLUS_3                         20                            6
  CLUS_4                         80                           62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(48) Variable = DEL PEAK 20(13Q12.11) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(13Q12.11) MUTATED       31     35     32
  DEL PEAK 20(13Q12.11) WILD-TYPE     98     38     61
D48V1, multiclass
        clus
vv       DEL PEAK 20(13Q12.11) MUTATED DEL PEAK 20(13Q12.11) WILD-TYPE
  CLUS_1                            31                              98
  CLUS_2                            35                              38
  CLUS_3                            32                              61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(13Q12.11) MUTATED       11     22     20     28      5     12
  DEL PEAK 20(13Q12.11) WILD-TYPE     60     32     37     31      4     33
D48V2, multiclass
        clus
vv       DEL PEAK 20(13Q12.11) MUTATED DEL PEAK 20(13Q12.11) WILD-TYPE
  CLUS_1                            11                              60
  CLUS_2                            22                              32
  CLUS_3                            20                              37
  CLUS_4                            28                              31
  CLUS_5                             5                               4
  CLUS_6                            12                              33
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(13Q12.11) MUTATED       20     15     18
  DEL PEAK 20(13Q12.11) WILD-TYPE     33     27     51
D48V3, multiclass
        clus
vv       DEL PEAK 20(13Q12.11) MUTATED DEL PEAK 20(13Q12.11) WILD-TYPE
  CLUS_1                            20                              33
  CLUS_2                            15                              27
  CLUS_3                            18                              51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(13Q12.11) MUTATED       17     11     13      7      5
  DEL PEAK 20(13Q12.11) WILD-TYPE     15     36     32     16     12
D48V4, multiclass
        clus
vv       DEL PEAK 20(13Q12.11) MUTATED DEL PEAK 20(13Q12.11) WILD-TYPE
  CLUS_1                            17                              15
  CLUS_2                            11                              36
  CLUS_3                            13                              32
  CLUS_4                             7                              16
  CLUS_5                             5                              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(13Q12.11) MUTATED       16     32     15     33
  DEL PEAK 20(13Q12.11) WILD-TYPE     38     68     54     36
D48V5, multiclass
        clus
vv       DEL PEAK 20(13Q12.11) MUTATED DEL PEAK 20(13Q12.11) WILD-TYPE
  CLUS_1                            16                              38
  CLUS_2                            32                              68
  CLUS_3                            15                              54
  CLUS_4                            33                              36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(13Q12.11) MUTATED       11     68     17
  DEL PEAK 20(13Q12.11) WILD-TYPE     61    117     18
D48V6, multiclass
        clus
vv       DEL PEAK 20(13Q12.11) MUTATED DEL PEAK 20(13Q12.11) WILD-TYPE
  CLUS_1                            11                              61
  CLUS_2                            68                             117
  CLUS_3                            17                              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(13Q12.11) MUTATED       21     25     52
  DEL PEAK 20(13Q12.11) WILD-TYPE     78     52     67
D48V7, multiclass
        clus
vv       DEL PEAK 20(13Q12.11) MUTATED DEL PEAK 20(13Q12.11) WILD-TYPE
  CLUS_1                            21                              78
  CLUS_2                            25                              52
  CLUS_3                            52                              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(13Q12.11) MUTATED        9     33     25     11     20
  DEL PEAK 20(13Q12.11) WILD-TYPE     51     62     47     14     23
D48V8, multiclass
        clus
vv       DEL PEAK 20(13Q12.11) MUTATED DEL PEAK 20(13Q12.11) WILD-TYPE
  CLUS_1                             9                              51
  CLUS_2                            33                              62
  CLUS_3                            25                              47
  CLUS_4                            11                              14
  CLUS_5                            20                              23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(13Q12.11) MUTATED       36     24     32
  DEL PEAK 20(13Q12.11) WILD-TYPE     89     53     48
D48V9, multiclass
        clus
vv       DEL PEAK 20(13Q12.11) MUTATED DEL PEAK 20(13Q12.11) WILD-TYPE
  CLUS_1                            36                              89
  CLUS_2                            24                              53
  CLUS_3                            32                              48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(13Q12.11) MUTATED        9     18     10     55
  DEL PEAK 20(13Q12.11) WILD-TYPE     55     32     16     87
D48V10, multiclass
        clus
vv       DEL PEAK 20(13Q12.11) MUTATED DEL PEAK 20(13Q12.11) WILD-TYPE
  CLUS_1                             9                              55
  CLUS_2                            18                              32
  CLUS_3                            10                              16
  CLUS_4                            55                              87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(49) Variable = DEL PEAK 21(13Q14.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(13Q14.2) MUTATED       39     39     40
  DEL PEAK 21(13Q14.2) WILD-TYPE     90     34     53
D49V1, multiclass
        clus
vv       DEL PEAK 21(13Q14.2) MUTATED DEL PEAK 21(13Q14.2) WILD-TYPE
  CLUS_1                           39                             90
  CLUS_2                           39                             34
  CLUS_3                           40                             53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(13Q14.2) MUTATED       16     26     24     30      7     15
  DEL PEAK 21(13Q14.2) WILD-TYPE     55     28     33     29      2     30
D49V2, multiclass
        clus
vv       DEL PEAK 21(13Q14.2) MUTATED DEL PEAK 21(13Q14.2) WILD-TYPE
  CLUS_1                           16                             55
  CLUS_2                           26                             28
  CLUS_3                           24                             33
  CLUS_4                           30                             29
  CLUS_5                            7                              2
  CLUS_6                           15                             30
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(13Q14.2) MUTATED       20     18     25
  DEL PEAK 21(13Q14.2) WILD-TYPE     33     24     44
D49V3, multiclass
        clus
vv       DEL PEAK 21(13Q14.2) MUTATED DEL PEAK 21(13Q14.2) WILD-TYPE
  CLUS_1                           20                             33
  CLUS_2                           18                             24
  CLUS_3                           25                             44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(13Q14.2) MUTATED       15     14     18      9      7
  DEL PEAK 21(13Q14.2) WILD-TYPE     17     33     27     14     10
D49V4, multiclass
        clus
vv       DEL PEAK 21(13Q14.2) MUTATED DEL PEAK 21(13Q14.2) WILD-TYPE
  CLUS_1                           15                             17
  CLUS_2                           14                             33
  CLUS_3                           18                             27
  CLUS_4                            9                             14
  CLUS_5                            7                             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(13Q14.2) MUTATED       27     38     15     35
  DEL PEAK 21(13Q14.2) WILD-TYPE     27     62     54     34
D49V5, multiclass
        clus
vv       DEL PEAK 21(13Q14.2) MUTATED DEL PEAK 21(13Q14.2) WILD-TYPE
  CLUS_1                           27                             27
  CLUS_2                           38                             62
  CLUS_3                           15                             54
  CLUS_4                           35                             34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(13Q14.2) MUTATED       16     83     16
  DEL PEAK 21(13Q14.2) WILD-TYPE     56    102     19
D49V6, multiclass
        clus
vv       DEL PEAK 21(13Q14.2) MUTATED DEL PEAK 21(13Q14.2) WILD-TYPE
  CLUS_1                           16                             56
  CLUS_2                           83                            102
  CLUS_3                           16                             19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(13Q14.2) MUTATED       30     29     59
  DEL PEAK 21(13Q14.2) WILD-TYPE     69     48     60
D49V7, multiclass
        clus
vv       DEL PEAK 21(13Q14.2) MUTATED DEL PEAK 21(13Q14.2) WILD-TYPE
  CLUS_1                           30                             69
  CLUS_2                           29                             48
  CLUS_3                           59                             60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(13Q14.2) MUTATED       11     43     27     13     24
  DEL PEAK 21(13Q14.2) WILD-TYPE     49     52     45     12     19
D49V8, multiclass
        clus
vv       DEL PEAK 21(13Q14.2) MUTATED DEL PEAK 21(13Q14.2) WILD-TYPE
  CLUS_1                           11                             49
  CLUS_2                           43                             52
  CLUS_3                           27                             45
  CLUS_4                           13                             12
  CLUS_5                           24                             19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(13Q14.2) MUTATED       46     26     40
  DEL PEAK 21(13Q14.2) WILD-TYPE     79     51     40
D49V9, multiclass
        clus
vv       DEL PEAK 21(13Q14.2) MUTATED DEL PEAK 21(13Q14.2) WILD-TYPE
  CLUS_1                           46                             79
  CLUS_2                           26                             51
  CLUS_3                           40                             40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(13Q14.2) MUTATED       14     19     10     69
  DEL PEAK 21(13Q14.2) WILD-TYPE     50     31     16     73
D49V10, multiclass
        clus
vv       DEL PEAK 21(13Q14.2) MUTATED DEL PEAK 21(13Q14.2) WILD-TYPE
  CLUS_1                           14                             50
  CLUS_2                           19                             31
  CLUS_3                           10                             16
  CLUS_4                           69                             73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(50) Variable = DEL PEAK 22(14Q32.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(14Q32.31) MUTATED       17     25      8
  DEL PEAK 22(14Q32.31) WILD-TYPE    112     48     85
D50V1, multiclass
        clus
vv       DEL PEAK 22(14Q32.31) MUTATED DEL PEAK 22(14Q32.31) WILD-TYPE
  CLUS_1                            17                             112
  CLUS_2                            25                              48
  CLUS_3                             8                              85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(14Q32.31) MUTATED       16      9      6     13      3      3
  DEL PEAK 22(14Q32.31) WILD-TYPE     55     45     51     46      6     42
D50V2, multiclass
        clus
vv       DEL PEAK 22(14Q32.31) MUTATED DEL PEAK 22(14Q32.31) WILD-TYPE
  CLUS_1                            16                              55
  CLUS_2                             9                              45
  CLUS_3                             6                              51
  CLUS_4                            13                              46
  CLUS_5                             3                               6
  CLUS_6                             3                              42
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(14Q32.31) MUTATED        7      6     17
  DEL PEAK 22(14Q32.31) WILD-TYPE     46     36     52
D50V3, multiclass
        clus
vv       DEL PEAK 22(14Q32.31) MUTATED DEL PEAK 22(14Q32.31) WILD-TYPE
  CLUS_1                             7                              46
  CLUS_2                             6                              36
  CLUS_3                            17                              52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(14Q32.31) MUTATED        1     12      5      6      6
  DEL PEAK 22(14Q32.31) WILD-TYPE     31     35     40     17     11
D50V4, multiclass
        clus
vv       DEL PEAK 22(14Q32.31) MUTATED DEL PEAK 22(14Q32.31) WILD-TYPE
  CLUS_1                             1                              31
  CLUS_2                            12                              35
  CLUS_3                             5                              40
  CLUS_4                             6                              17
  CLUS_5                             6                              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(14Q32.31) MUTATED        7     10     20     12
  DEL PEAK 22(14Q32.31) WILD-TYPE     47     90     49     57
D50V5, multiclass
        clus
vv       DEL PEAK 22(14Q32.31) MUTATED DEL PEAK 22(14Q32.31) WILD-TYPE
  CLUS_1                             7                              47
  CLUS_2                            10                              90
  CLUS_3                            20                              49
  CLUS_4                            12                              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(14Q32.31) MUTATED       17     22     10
  DEL PEAK 22(14Q32.31) WILD-TYPE     55    163     25
D50V6, multiclass
        clus
vv       DEL PEAK 22(14Q32.31) MUTATED DEL PEAK 22(14Q32.31) WILD-TYPE
  CLUS_1                            17                              55
  CLUS_2                            22                             163
  CLUS_3                            10                              25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(14Q32.31) MUTATED       22     10     18
  DEL PEAK 22(14Q32.31) WILD-TYPE     77     67    101
D50V7, multiclass
        clus
vv       DEL PEAK 22(14Q32.31) MUTATED DEL PEAK 22(14Q32.31) WILD-TYPE
  CLUS_1                            22                              77
  CLUS_2                            10                              67
  CLUS_3                            18                             101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(14Q32.31) MUTATED       13     19      4      4     10
  DEL PEAK 22(14Q32.31) WILD-TYPE     47     76     68     21     33
D50V8, multiclass
        clus
vv       DEL PEAK 22(14Q32.31) MUTATED DEL PEAK 22(14Q32.31) WILD-TYPE
  CLUS_1                            13                              47
  CLUS_2                            19                              76
  CLUS_3                             4                              68
  CLUS_4                             4                              21
  CLUS_5                            10                              33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(14Q32.31) MUTATED       28      8     13
  DEL PEAK 22(14Q32.31) WILD-TYPE     97     69     67
D50V9, multiclass
        clus
vv       DEL PEAK 22(14Q32.31) MUTATED DEL PEAK 22(14Q32.31) WILD-TYPE
  CLUS_1                            28                              97
  CLUS_2                             8                              69
  CLUS_3                            13                              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(14Q32.31) MUTATED       15      4      3     27
  DEL PEAK 22(14Q32.31) WILD-TYPE     49     46     23    115
D50V10, multiclass
        clus
vv       DEL PEAK 22(14Q32.31) MUTATED DEL PEAK 22(14Q32.31) WILD-TYPE
  CLUS_1                            15                              49
  CLUS_2                             4                              46
  CLUS_3                             3                              23
  CLUS_4                            27                             115
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(51) Variable = DEL PEAK 23(15Q21.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(15Q21.1) MUTATED       20     31     19
  DEL PEAK 23(15Q21.1) WILD-TYPE    109     42     74
D51V1, multiclass
        clus
vv       DEL PEAK 23(15Q21.1) MUTATED DEL PEAK 23(15Q21.1) WILD-TYPE
  CLUS_1                           20                            109
  CLUS_2                           31                             42
  CLUS_3                           19                             74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(15Q21.1) MUTATED       22     11     10     17      3      7
  DEL PEAK 23(15Q21.1) WILD-TYPE     49     43     47     42      6     38
D51V2, multiclass
        clus
vv       DEL PEAK 23(15Q21.1) MUTATED DEL PEAK 23(15Q21.1) WILD-TYPE
  CLUS_1                           22                             49
  CLUS_2                           11                             43
  CLUS_3                           10                             47
  CLUS_4                           17                             42
  CLUS_5                            3                              6
  CLUS_6                            7                             38
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(15Q21.1) MUTATED       12      7     16
  DEL PEAK 23(15Q21.1) WILD-TYPE     41     35     53
D51V3, multiclass
        clus
vv       DEL PEAK 23(15Q21.1) MUTATED DEL PEAK 23(15Q21.1) WILD-TYPE
  CLUS_1                           12                             41
  CLUS_2                            7                             35
  CLUS_3                           16                             53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(15Q21.1) MUTATED        5     10      9      8      3
  DEL PEAK 23(15Q21.1) WILD-TYPE     27     37     36     15     14
D51V4, multiclass
        clus
vv       DEL PEAK 23(15Q21.1) MUTATED DEL PEAK 23(15Q21.1) WILD-TYPE
  CLUS_1                            5                             27
  CLUS_2                           10                             37
  CLUS_3                            9                             36
  CLUS_4                            8                             15
  CLUS_5                            3                             14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(15Q21.1) MUTATED       15     16     21     18
  DEL PEAK 23(15Q21.1) WILD-TYPE     39     84     48     51
D51V5, multiclass
        clus
vv       DEL PEAK 23(15Q21.1) MUTATED DEL PEAK 23(15Q21.1) WILD-TYPE
  CLUS_1                           15                             39
  CLUS_2                           16                             84
  CLUS_3                           21                             48
  CLUS_4                           18                             51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(15Q21.1) MUTATED       24     36     10
  DEL PEAK 23(15Q21.1) WILD-TYPE     48    149     25
D51V6, multiclass
        clus
vv       DEL PEAK 23(15Q21.1) MUTATED DEL PEAK 23(15Q21.1) WILD-TYPE
  CLUS_1                           24                             48
  CLUS_2                           36                            149
  CLUS_3                           10                             25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(15Q21.1) MUTATED       27      9     34
  DEL PEAK 23(15Q21.1) WILD-TYPE     72     68     85
D51V7, multiclass
        clus
vv       DEL PEAK 23(15Q21.1) MUTATED DEL PEAK 23(15Q21.1) WILD-TYPE
  CLUS_1                           27                             72
  CLUS_2                            9                             68
  CLUS_3                           34                             85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(15Q21.1) MUTATED       20     21      9      6     14
  DEL PEAK 23(15Q21.1) WILD-TYPE     40     74     63     19     29
D51V8, multiclass
        clus
vv       DEL PEAK 23(15Q21.1) MUTATED DEL PEAK 23(15Q21.1) WILD-TYPE
  CLUS_1                           20                             40
  CLUS_2                           21                             74
  CLUS_3                            9                             63
  CLUS_4                            6                             19
  CLUS_5                           14                             29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(15Q21.1) MUTATED       40     12     16
  DEL PEAK 23(15Q21.1) WILD-TYPE     85     65     64
D51V9, multiclass
        clus
vv       DEL PEAK 23(15Q21.1) MUTATED DEL PEAK 23(15Q21.1) WILD-TYPE
  CLUS_1                           40                             85
  CLUS_2                           12                             65
  CLUS_3                           16                             64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(15Q21.1) MUTATED       23      7      5     33
  DEL PEAK 23(15Q21.1) WILD-TYPE     41     43     21    109
D51V10, multiclass
        clus
vv       DEL PEAK 23(15Q21.1) MUTATED DEL PEAK 23(15Q21.1) WILD-TYPE
  CLUS_1                           23                             41
  CLUS_2                            7                             43
  CLUS_3                            5                             21
  CLUS_4                           33                            109
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(52) Variable = DEL PEAK 24(16Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(16Q11.2) MUTATED       19     18     16
  DEL PEAK 24(16Q11.2) WILD-TYPE    110     55     77
D52V1, multiclass
        clus
vv       DEL PEAK 24(16Q11.2) MUTATED DEL PEAK 24(16Q11.2) WILD-TYPE
  CLUS_1                           19                            110
  CLUS_2                           18                             55
  CLUS_3                           16                             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 24(16Q11.2) MUTATED       22      8      2     10      2      9
  DEL PEAK 24(16Q11.2) WILD-TYPE     49     46     55     49      7     36
D52V2, multiclass
        clus
vv       DEL PEAK 24(16Q11.2) MUTATED DEL PEAK 24(16Q11.2) WILD-TYPE
  CLUS_1                           22                             49
  CLUS_2                            8                             46
  CLUS_3                            2                             55
  CLUS_4                           10                             49
  CLUS_5                            2                              7
  CLUS_6                            9                             36
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(16Q11.2) MUTATED        6      9     17
  DEL PEAK 24(16Q11.2) WILD-TYPE     47     33     52
D52V3, multiclass
        clus
vv       DEL PEAK 24(16Q11.2) MUTATED DEL PEAK 24(16Q11.2) WILD-TYPE
  CLUS_1                            6                             47
  CLUS_2                            9                             33
  CLUS_3                           17                             52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(16Q11.2) MUTATED        4     14      6      3      5
  DEL PEAK 24(16Q11.2) WILD-TYPE     28     33     39     20     12
D52V4, multiclass
        clus
vv       DEL PEAK 24(16Q11.2) MUTATED DEL PEAK 24(16Q11.2) WILD-TYPE
  CLUS_1                            4                             28
  CLUS_2                           14                             33
  CLUS_3                            6                             39
  CLUS_4                            3                             20
  CLUS_5                            5                             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(16Q11.2) MUTATED       11     12     20     10
  DEL PEAK 24(16Q11.2) WILD-TYPE     43     88     49     59
D52V5, multiclass
        clus
vv       DEL PEAK 24(16Q11.2) MUTATED DEL PEAK 24(16Q11.2) WILD-TYPE
  CLUS_1                           11                             43
  CLUS_2                           12                             88
  CLUS_3                           20                             49
  CLUS_4                           10                             59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(16Q11.2) MUTATED       22     26      5
  DEL PEAK 24(16Q11.2) WILD-TYPE     50    159     30
D52V6, multiclass
        clus
vv       DEL PEAK 24(16Q11.2) MUTATED DEL PEAK 24(16Q11.2) WILD-TYPE
  CLUS_1                           22                             50
  CLUS_2                           26                            159
  CLUS_3                            5                             30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(16Q11.2) MUTATED       27     12     14
  DEL PEAK 24(16Q11.2) WILD-TYPE     72     65    105
D52V7, multiclass
        clus
vv       DEL PEAK 24(16Q11.2) MUTATED DEL PEAK 24(16Q11.2) WILD-TYPE
  CLUS_1                           27                             72
  CLUS_2                           12                             65
  CLUS_3                           14                            105
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(16Q11.2) MUTATED       18     14      6      7      8
  DEL PEAK 24(16Q11.2) WILD-TYPE     42     81     66     18     35
D52V8, multiclass
        clus
vv       DEL PEAK 24(16Q11.2) MUTATED DEL PEAK 24(16Q11.2) WILD-TYPE
  CLUS_1                           18                             42
  CLUS_2                           14                             81
  CLUS_3                            6                             66
  CLUS_4                            7                             18
  CLUS_5                            8                             35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(16Q11.2) MUTATED       29     11     12
  DEL PEAK 24(16Q11.2) WILD-TYPE     96     66     68
D52V9, multiclass
        clus
vv       DEL PEAK 24(16Q11.2) MUTATED DEL PEAK 24(16Q11.2) WILD-TYPE
  CLUS_1                           29                             96
  CLUS_2                           11                             66
  CLUS_3                           12                             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(16Q11.2) MUTATED       20      5      6     21
  DEL PEAK 24(16Q11.2) WILD-TYPE     44     45     20    121
D52V10, multiclass
        clus
vv       DEL PEAK 24(16Q11.2) MUTATED DEL PEAK 24(16Q11.2) WILD-TYPE
  CLUS_1                           20                             44
  CLUS_2                            5                             45
  CLUS_3                            6                             20
  CLUS_4                           21                            121
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(53) Variable = DEL PEAK 25(16Q23.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(16Q23.1) MUTATED       17     22     16
  DEL PEAK 25(16Q23.1) WILD-TYPE    112     51     77
D53V1, multiclass
        clus
vv       DEL PEAK 25(16Q23.1) MUTATED DEL PEAK 25(16Q23.1) WILD-TYPE
  CLUS_1                           17                            112
  CLUS_2                           22                             51
  CLUS_3                           16                             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 25(16Q23.1) MUTATED       24      7      4     10      4      6
  DEL PEAK 25(16Q23.1) WILD-TYPE     47     47     53     49      5     39
D53V2, multiclass
        clus
vv       DEL PEAK 25(16Q23.1) MUTATED DEL PEAK 25(16Q23.1) WILD-TYPE
  CLUS_1                           24                             47
  CLUS_2                            7                             47
  CLUS_3                            4                             53
  CLUS_4                           10                             49
  CLUS_5                            4                              5
  CLUS_6                            6                             39
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(16Q23.1) MUTATED       10      6     17
  DEL PEAK 25(16Q23.1) WILD-TYPE     43     36     52
D53V3, multiclass
        clus
vv       DEL PEAK 25(16Q23.1) MUTATED DEL PEAK 25(16Q23.1) WILD-TYPE
  CLUS_1                           10                             43
  CLUS_2                            6                             36
  CLUS_3                           17                             52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(16Q23.1) MUTATED        5     15      6      3      4
  DEL PEAK 25(16Q23.1) WILD-TYPE     27     32     39     20     13
D53V4, multiclass
        clus
vv       DEL PEAK 25(16Q23.1) MUTATED DEL PEAK 25(16Q23.1) WILD-TYPE
  CLUS_1                            5                             27
  CLUS_2                           15                             32
  CLUS_3                            6                             39
  CLUS_4                            3                             20
  CLUS_5                            4                             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(16Q23.1) MUTATED       14      8     22     11
  DEL PEAK 25(16Q23.1) WILD-TYPE     40     92     47     58
D53V5, multiclass
        clus
vv       DEL PEAK 25(16Q23.1) MUTATED DEL PEAK 25(16Q23.1) WILD-TYPE
  CLUS_1                           14                             40
  CLUS_2                            8                             92
  CLUS_3                           22                             47
  CLUS_4                           11                             58
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(16Q23.1) MUTATED       25     23      7
  DEL PEAK 25(16Q23.1) WILD-TYPE     47    162     28
D53V6, multiclass
        clus
vv       DEL PEAK 25(16Q23.1) MUTATED DEL PEAK 25(16Q23.1) WILD-TYPE
  CLUS_1                           25                             47
  CLUS_2                           23                            162
  CLUS_3                            7                             28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(16Q23.1) MUTATED       27     12     16
  DEL PEAK 25(16Q23.1) WILD-TYPE     72     65    103
D53V7, multiclass
        clus
vv       DEL PEAK 25(16Q23.1) MUTATED DEL PEAK 25(16Q23.1) WILD-TYPE
  CLUS_1                           27                             72
  CLUS_2                           12                             65
  CLUS_3                           16                            103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(16Q23.1) MUTATED       20     16      4      7      8
  DEL PEAK 25(16Q23.1) WILD-TYPE     40     79     68     18     35
D53V8, multiclass
        clus
vv       DEL PEAK 25(16Q23.1) MUTATED DEL PEAK 25(16Q23.1) WILD-TYPE
  CLUS_1                           20                             40
  CLUS_2                           16                             79
  CLUS_3                            4                             68
  CLUS_4                            7                             18
  CLUS_5                            8                             35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(16Q23.1) MUTATED       32     12     10
  DEL PEAK 25(16Q23.1) WILD-TYPE     93     65     70
D53V9, multiclass
        clus
vv       DEL PEAK 25(16Q23.1) MUTATED DEL PEAK 25(16Q23.1) WILD-TYPE
  CLUS_1                           32                             93
  CLUS_2                           12                             65
  CLUS_3                           10                             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(16Q23.1) MUTATED       22      4      4     24
  DEL PEAK 25(16Q23.1) WILD-TYPE     42     46     22    118
D53V10, multiclass
        clus
vv       DEL PEAK 25(16Q23.1) MUTATED DEL PEAK 25(16Q23.1) WILD-TYPE
  CLUS_1                           22                             42
  CLUS_2                            4                             46
  CLUS_3                            4                             22
  CLUS_4                           24                            118
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(54) Variable = DEL PEAK 26(17P12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(17P12) MUTATED       34     39     36
  DEL PEAK 26(17P12) WILD-TYPE     95     34     57
D54V1, multiclass
        clus
vv       DEL PEAK 26(17P12) MUTATED DEL PEAK 26(17P12) WILD-TYPE
  CLUS_1                         34                           95
  CLUS_2                         39                           34
  CLUS_3                         36                           57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(17P12) MUTATED       21     24     19     23      7     15
  DEL PEAK 26(17P12) WILD-TYPE     50     30     38     36      2     30
D54V2, multiclass
        clus
vv       DEL PEAK 26(17P12) MUTATED DEL PEAK 26(17P12) WILD-TYPE
  CLUS_1                         21                           50
  CLUS_2                         24                           30
  CLUS_3                         19                           38
  CLUS_4                         23                           36
  CLUS_5                          7                            2
  CLUS_6                         15                           30
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(17P12) MUTATED       17     17     16
  DEL PEAK 26(17P12) WILD-TYPE     36     25     53
D54V3, multiclass
        clus
vv       DEL PEAK 26(17P12) MUTATED DEL PEAK 26(17P12) WILD-TYPE
  CLUS_1                         17                           36
  CLUS_2                         17                           25
  CLUS_3                         16                           53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(17P12) MUTATED       10     13     15      5      7
  DEL PEAK 26(17P12) WILD-TYPE     22     34     30     18     10
D54V4, multiclass
        clus
vv       DEL PEAK 26(17P12) MUTATED DEL PEAK 26(17P12) WILD-TYPE
  CLUS_1                         10                           22
  CLUS_2                         13                           34
  CLUS_3                         15                           30
  CLUS_4                          5                           18
  CLUS_5                          7                           10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(17P12) MUTATED       24     35     19     30
  DEL PEAK 26(17P12) WILD-TYPE     30     65     50     39
D54V5, multiclass
        clus
vv       DEL PEAK 26(17P12) MUTATED DEL PEAK 26(17P12) WILD-TYPE
  CLUS_1                         24                           30
  CLUS_2                         35                           65
  CLUS_3                         19                           50
  CLUS_4                         30                           39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(17P12) MUTATED       21     74     13
  DEL PEAK 26(17P12) WILD-TYPE     51    111     22
D54V6, multiclass
        clus
vv       DEL PEAK 26(17P12) MUTATED DEL PEAK 26(17P12) WILD-TYPE
  CLUS_1                         21                           51
  CLUS_2                         74                          111
  CLUS_3                         13                           22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(17P12) MUTATED       30     29     50
  DEL PEAK 26(17P12) WILD-TYPE     69     48     69
D54V7, multiclass
        clus
vv       DEL PEAK 26(17P12) MUTATED DEL PEAK 26(17P12) WILD-TYPE
  CLUS_1                         30                           69
  CLUS_2                         29                           48
  CLUS_3                         50                           69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(17P12) MUTATED       16     36     25     12     20
  DEL PEAK 26(17P12) WILD-TYPE     44     59     47     13     23
D54V8, multiclass
        clus
vv       DEL PEAK 26(17P12) MUTATED DEL PEAK 26(17P12) WILD-TYPE
  CLUS_1                         16                           44
  CLUS_2                         36                           59
  CLUS_3                         25                           47
  CLUS_4                         12                           13
  CLUS_5                         20                           23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(17P12) MUTATED       42     29     32
  DEL PEAK 26(17P12) WILD-TYPE     83     48     48
D54V9, multiclass
        clus
vv       DEL PEAK 26(17P12) MUTATED DEL PEAK 26(17P12) WILD-TYPE
  CLUS_1                         42                           83
  CLUS_2                         29                           48
  CLUS_3                         32                           48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(17P12) MUTATED       20     19      9     55
  DEL PEAK 26(17P12) WILD-TYPE     44     31     17     87
D54V10, multiclass
        clus
vv       DEL PEAK 26(17P12) MUTATED DEL PEAK 26(17P12) WILD-TYPE
  CLUS_1                         20                           44
  CLUS_2                         19                           31
  CLUS_3                          9                           17
  CLUS_4                         55                           87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(55) Variable = DEL PEAK 27(17Q25.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(17Q25.3) MUTATED       18     13     20
  DEL PEAK 27(17Q25.3) WILD-TYPE    111     60     73
D55V1, multiclass
        clus
vv       DEL PEAK 27(17Q25.3) MUTATED DEL PEAK 27(17Q25.3) WILD-TYPE
  CLUS_1                           18                            111
  CLUS_2                           13                             60
  CLUS_3                           20                             73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(17Q25.3) MUTATED        3     19      8     14      1      6
  DEL PEAK 27(17Q25.3) WILD-TYPE     68     35     49     45      8     39
D55V2, multiclass
        clus
vv       DEL PEAK 27(17Q25.3) MUTATED DEL PEAK 27(17Q25.3) WILD-TYPE
  CLUS_1                            3                             68
  CLUS_2                           19                             35
  CLUS_3                            8                             49
  CLUS_4                           14                             45
  CLUS_5                            1                              8
  CLUS_6                            6                             39
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(17Q25.3) MUTATED       10     10     10
  DEL PEAK 27(17Q25.3) WILD-TYPE     43     32     59
D55V3, multiclass
        clus
vv       DEL PEAK 27(17Q25.3) MUTATED DEL PEAK 27(17Q25.3) WILD-TYPE
  CLUS_1                           10                             43
  CLUS_2                           10                             32
  CLUS_3                           10                             59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(17Q25.3) MUTATED        6      7      9      5      3
  DEL PEAK 27(17Q25.3) WILD-TYPE     26     40     36     18     14
D55V4, multiclass
        clus
vv       DEL PEAK 27(17Q25.3) MUTATED DEL PEAK 27(17Q25.3) WILD-TYPE
  CLUS_1                            6                             26
  CLUS_2                            7                             40
  CLUS_3                            9                             36
  CLUS_4                            5                             18
  CLUS_5                            3                             14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(17Q25.3) MUTATED        5     21      2     22
  DEL PEAK 27(17Q25.3) WILD-TYPE     49     79     67     47
D55V5, multiclass
        clus
vv       DEL PEAK 27(17Q25.3) MUTATED DEL PEAK 27(17Q25.3) WILD-TYPE
  CLUS_1                            5                             49
  CLUS_2                           21                             79
  CLUS_3                            2                             67
  CLUS_4                           22                             47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(17Q25.3) MUTATED        3     39      8
  DEL PEAK 27(17Q25.3) WILD-TYPE     69    146     27
D55V6, multiclass
        clus
vv       DEL PEAK 27(17Q25.3) MUTATED DEL PEAK 27(17Q25.3) WILD-TYPE
  CLUS_1                            3                             69
  CLUS_2                           39                            146
  CLUS_3                            8                             27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(17Q25.3) MUTATED        9     11     31
  DEL PEAK 27(17Q25.3) WILD-TYPE     90     66     88
D55V7, multiclass
        clus
vv       DEL PEAK 27(17Q25.3) MUTATED DEL PEAK 27(17Q25.3) WILD-TYPE
  CLUS_1                            9                             90
  CLUS_2                           11                             66
  CLUS_3                           31                             88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(17Q25.3) MUTATED        1     23     12      6      9
  DEL PEAK 27(17Q25.3) WILD-TYPE     59     72     60     19     34
D55V8, multiclass
        clus
vv       DEL PEAK 27(17Q25.3) MUTATED DEL PEAK 27(17Q25.3) WILD-TYPE
  CLUS_1                            1                             59
  CLUS_2                           23                             72
  CLUS_3                           12                             60
  CLUS_4                            6                             19
  CLUS_5                            9                             34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(17Q25.3) MUTATED       18     12     17
  DEL PEAK 27(17Q25.3) WILD-TYPE    107     65     63
D55V9, multiclass
        clus
vv       DEL PEAK 27(17Q25.3) MUTATED DEL PEAK 27(17Q25.3) WILD-TYPE
  CLUS_1                           18                            107
  CLUS_2                           12                             65
  CLUS_3                           17                             63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(17Q25.3) MUTATED        3      8      3     33
  DEL PEAK 27(17Q25.3) WILD-TYPE     61     42     23    109
D55V10, multiclass
        clus
vv       DEL PEAK 27(17Q25.3) MUTATED DEL PEAK 27(17Q25.3) WILD-TYPE
  CLUS_1                            3                             61
  CLUS_2                            8                             42
  CLUS_3                            3                             23
  CLUS_4                           33                            109
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(56) Variable = DEL PEAK 28(18Q21.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(18Q21.2) MUTATED       32     27     23
  DEL PEAK 28(18Q21.2) WILD-TYPE     97     46     70
D56V1, multiclass
        clus
vv       DEL PEAK 28(18Q21.2) MUTATED DEL PEAK 28(18Q21.2) WILD-TYPE
  CLUS_1                           32                             97
  CLUS_2                           27                             46
  CLUS_3                           23                             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(18Q21.2) MUTATED       31      9     10     25      1      6
  DEL PEAK 28(18Q21.2) WILD-TYPE     40     45     47     34      8     39
D56V2, multiclass
        clus
vv       DEL PEAK 28(18Q21.2) MUTATED DEL PEAK 28(18Q21.2) WILD-TYPE
  CLUS_1                           31                             40
  CLUS_2                            9                             45
  CLUS_3                           10                             47
  CLUS_4                           25                             34
  CLUS_5                            1                              8
  CLUS_6                            6                             39
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(18Q21.2) MUTATED       11      9     20
  DEL PEAK 28(18Q21.2) WILD-TYPE     42     33     49
D56V3, multiclass
        clus
vv       DEL PEAK 28(18Q21.2) MUTATED DEL PEAK 28(18Q21.2) WILD-TYPE
  CLUS_1                           11                             42
  CLUS_2                            9                             33
  CLUS_3                           20                             49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(18Q21.2) MUTATED        5     15      7     10      3
  DEL PEAK 28(18Q21.2) WILD-TYPE     27     32     38     13     14
D56V4, multiclass
        clus
vv       DEL PEAK 28(18Q21.2) MUTATED DEL PEAK 28(18Q21.2) WILD-TYPE
  CLUS_1                            5                             27
  CLUS_2                           15                             32
  CLUS_3                            7                             38
  CLUS_4                           10                             13
  CLUS_5                            3                             14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(18Q21.2) MUTATED       12      9     31     30
  DEL PEAK 28(18Q21.2) WILD-TYPE     42     91     38     39
D56V5, multiclass
        clus
vv       DEL PEAK 28(18Q21.2) MUTATED DEL PEAK 28(18Q21.2) WILD-TYPE
  CLUS_1                           12                             42
  CLUS_2                            9                             91
  CLUS_3                           31                             38
  CLUS_4                           30                             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(18Q21.2) MUTATED       32     35     15
  DEL PEAK 28(18Q21.2) WILD-TYPE     40    150     20
D56V6, multiclass
        clus
vv       DEL PEAK 28(18Q21.2) MUTATED DEL PEAK 28(18Q21.2) WILD-TYPE
  CLUS_1                           32                             40
  CLUS_2                           35                            150
  CLUS_3                           15                             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(18Q21.2) MUTATED       31     12     39
  DEL PEAK 28(18Q21.2) WILD-TYPE     68     65     80
D56V7, multiclass
        clus
vv       DEL PEAK 28(18Q21.2) MUTATED DEL PEAK 28(18Q21.2) WILD-TYPE
  CLUS_1                           31                             68
  CLUS_2                           12                             65
  CLUS_3                           39                             80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(18Q21.2) MUTATED       29     18     11      4     20
  DEL PEAK 28(18Q21.2) WILD-TYPE     31     77     61     21     23
D56V8, multiclass
        clus
vv       DEL PEAK 28(18Q21.2) MUTATED DEL PEAK 28(18Q21.2) WILD-TYPE
  CLUS_1                           29                             31
  CLUS_2                           18                             77
  CLUS_3                           11                             61
  CLUS_4                            4                             21
  CLUS_5                           20                             23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(18Q21.2) MUTATED       45     15     22
  DEL PEAK 28(18Q21.2) WILD-TYPE     80     62     58
D56V9, multiclass
        clus
vv       DEL PEAK 28(18Q21.2) MUTATED DEL PEAK 28(18Q21.2) WILD-TYPE
  CLUS_1                           45                             80
  CLUS_2                           15                             62
  CLUS_3                           22                             58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(18Q21.2) MUTATED       29      7      6     40
  DEL PEAK 28(18Q21.2) WILD-TYPE     35     43     20    102
D56V10, multiclass
        clus
vv       DEL PEAK 28(18Q21.2) MUTATED DEL PEAK 28(18Q21.2) WILD-TYPE
  CLUS_1                           29                             35
  CLUS_2                            7                             43
  CLUS_3                            6                             20
  CLUS_4                           40                            102
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(57) Variable = DEL PEAK 29(19P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(19P13.3) MUTATED       24     52     29
  DEL PEAK 29(19P13.3) WILD-TYPE    105     21     64
D57V1, multiclass
        clus
vv       DEL PEAK 29(19P13.3) MUTATED DEL PEAK 29(19P13.3) WILD-TYPE
  CLUS_1                           24                            105
  CLUS_2                           52                             21
  CLUS_3                           29                             64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 29(19P13.3) MUTATED       25     16      9     39      2     14
  DEL PEAK 29(19P13.3) WILD-TYPE     46     38     48     20      7     31
D57V2, multiclass
        clus
vv       DEL PEAK 29(19P13.3) MUTATED DEL PEAK 29(19P13.3) WILD-TYPE
  CLUS_1                           25                             46
  CLUS_2                           16                             38
  CLUS_3                            9                             48
  CLUS_4                           39                             20
  CLUS_5                            2                              7
  CLUS_6                           14                             31
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(19P13.3) MUTATED       22     13     23
  DEL PEAK 29(19P13.3) WILD-TYPE     31     29     46
D57V3, multiclass
        clus
vv       DEL PEAK 29(19P13.3) MUTATED DEL PEAK 29(19P13.3) WILD-TYPE
  CLUS_1                           22                             31
  CLUS_2                           13                             29
  CLUS_3                           23                             46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(19P13.3) MUTATED       11     11     15     12      9
  DEL PEAK 29(19P13.3) WILD-TYPE     21     36     30     11      8
D57V4, multiclass
        clus
vv       DEL PEAK 29(19P13.3) MUTATED DEL PEAK 29(19P13.3) WILD-TYPE
  CLUS_1                           11                             21
  CLUS_2                           11                             36
  CLUS_3                           15                             30
  CLUS_4                           12                             11
  CLUS_5                            9                              8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(19P13.3) MUTATED       17     23     25     39
  DEL PEAK 29(19P13.3) WILD-TYPE     37     77     44     30
D57V5, multiclass
        clus
vv       DEL PEAK 29(19P13.3) MUTATED DEL PEAK 29(19P13.3) WILD-TYPE
  CLUS_1                           17                             37
  CLUS_2                           23                             77
  CLUS_3                           25                             44
  CLUS_4                           39                             30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(19P13.3) MUTATED       25     53     26
  DEL PEAK 29(19P13.3) WILD-TYPE     47    132      9
D57V6, multiclass
        clus
vv       DEL PEAK 29(19P13.3) MUTATED DEL PEAK 29(19P13.3) WILD-TYPE
  CLUS_1                           25                             47
  CLUS_2                           53                            132
  CLUS_3                           26                              9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(19P13.3) MUTATED       40     17     48
  DEL PEAK 29(19P13.3) WILD-TYPE     59     60     71
D57V7, multiclass
        clus
vv       DEL PEAK 29(19P13.3) MUTATED DEL PEAK 29(19P13.3) WILD-TYPE
  CLUS_1                           40                             59
  CLUS_2                           17                             60
  CLUS_3                           48                             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(19P13.3) MUTATED       17     36     13     13     26
  DEL PEAK 29(19P13.3) WILD-TYPE     43     59     59     12     17
D57V8, multiclass
        clus
vv       DEL PEAK 29(19P13.3) MUTATED DEL PEAK 29(19P13.3) WILD-TYPE
  CLUS_1                           17                             43
  CLUS_2                           36                             59
  CLUS_3                           13                             59
  CLUS_4                           13                             12
  CLUS_5                           26                             17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(19P13.3) MUTATED       52     19     30
  DEL PEAK 29(19P13.3) WILD-TYPE     73     58     50
D57V9, multiclass
        clus
vv       DEL PEAK 29(19P13.3) MUTATED DEL PEAK 29(19P13.3) WILD-TYPE
  CLUS_1                           52                             73
  CLUS_2                           19                             58
  CLUS_3                           30                             50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(19P13.3) MUTATED       20     11      9     61
  DEL PEAK 29(19P13.3) WILD-TYPE     44     39     17     81
D57V10, multiclass
        clus
vv       DEL PEAK 29(19P13.3) MUTATED DEL PEAK 29(19P13.3) WILD-TYPE
  CLUS_1                           20                             44
  CLUS_2                           11                             39
  CLUS_3                            9                             17
  CLUS_4                           61                             81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(58) Variable = DEL PEAK 30(19Q13.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(19Q13.33) MUTATED       14     10     14
  DEL PEAK 30(19Q13.33) WILD-TYPE    115     63     79
D58V1, multiclass
        clus
vv       DEL PEAK 30(19Q13.33) MUTATED DEL PEAK 30(19Q13.33) WILD-TYPE
  CLUS_1                            14                             115
  CLUS_2                            10                              63
  CLUS_3                            14                              79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 30(19Q13.33) MUTATED       13      7      1      9      1      7
  DEL PEAK 30(19Q13.33) WILD-TYPE     58     47     56     50      8     38
D58V2, multiclass
        clus
vv       DEL PEAK 30(19Q13.33) MUTATED DEL PEAK 30(19Q13.33) WILD-TYPE
  CLUS_1                            13                              58
  CLUS_2                             7                              47
  CLUS_3                             1                              56
  CLUS_4                             9                              50
  CLUS_5                             1                               8
  CLUS_6                             7                              38
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(19Q13.33) MUTATED        2      5      7
  DEL PEAK 30(19Q13.33) WILD-TYPE     51     37     62
D58V3, multiclass
        clus
vv       DEL PEAK 30(19Q13.33) MUTATED DEL PEAK 30(19Q13.33) WILD-TYPE
  CLUS_1                             2                              51
  CLUS_2                             5                              37
  CLUS_3                             7                              62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(19Q13.33) MUTATED        1      6      3      2      2
  DEL PEAK 30(19Q13.33) WILD-TYPE     31     41     42     21     15
D58V4, multiclass
        clus
vv       DEL PEAK 30(19Q13.33) MUTATED DEL PEAK 30(19Q13.33) WILD-TYPE
  CLUS_1                             1                              31
  CLUS_2                             6                              41
  CLUS_3                             3                              42
  CLUS_4                             2                              21
  CLUS_5                             2                              15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(19Q13.33) MUTATED        7      8     14      9
  DEL PEAK 30(19Q13.33) WILD-TYPE     47     92     55     60
D58V5, multiclass
        clus
vv       DEL PEAK 30(19Q13.33) MUTATED DEL PEAK 30(19Q13.33) WILD-TYPE
  CLUS_1                             7                              47
  CLUS_2                             8                              92
  CLUS_3                            14                              55
  CLUS_4                             9                              60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(19Q13.33) MUTATED       14     21      3
  DEL PEAK 30(19Q13.33) WILD-TYPE     58    164     32
D58V6, multiclass
        clus
vv       DEL PEAK 30(19Q13.33) MUTATED DEL PEAK 30(19Q13.33) WILD-TYPE
  CLUS_1                            14                              58
  CLUS_2                            21                             164
  CLUS_3                             3                              32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(19Q13.33) MUTATED       17      5     16
  DEL PEAK 30(19Q13.33) WILD-TYPE     82     72    103
D58V7, multiclass
        clus
vv       DEL PEAK 30(19Q13.33) MUTATED DEL PEAK 30(19Q13.33) WILD-TYPE
  CLUS_1                            17                              82
  CLUS_2                             5                              72
  CLUS_3                            16                             103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(19Q13.33) MUTATED       10     16      4      2      6
  DEL PEAK 30(19Q13.33) WILD-TYPE     50     79     68     23     37
D58V8, multiclass
        clus
vv       DEL PEAK 30(19Q13.33) MUTATED DEL PEAK 30(19Q13.33) WILD-TYPE
  CLUS_1                            10                              50
  CLUS_2                            16                              79
  CLUS_3                             4                              68
  CLUS_4                             2                              23
  CLUS_5                             6                              37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(19Q13.33) MUTATED       22      5     11
  DEL PEAK 30(19Q13.33) WILD-TYPE    103     72     69
D58V9, multiclass
        clus
vv       DEL PEAK 30(19Q13.33) MUTATED DEL PEAK 30(19Q13.33) WILD-TYPE
  CLUS_1                            22                             103
  CLUS_2                             5                              72
  CLUS_3                            11                              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(19Q13.33) MUTATED       13      3      4     18
  DEL PEAK 30(19Q13.33) WILD-TYPE     51     47     22    124
D58V10, multiclass
        clus
vv       DEL PEAK 30(19Q13.33) MUTATED DEL PEAK 30(19Q13.33) WILD-TYPE
  CLUS_1                            13                              51
  CLUS_2                             3                              47
  CLUS_3                             4                              22
  CLUS_4                            18                             124
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(59) Variable = DEL PEAK 31(20P12.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(20P12.1) MUTATED       16     11      9
  DEL PEAK 31(20P12.1) WILD-TYPE    113     62     84
D59V1, multiclass
        clus
vv       DEL PEAK 31(20P12.1) MUTATED DEL PEAK 31(20P12.1) WILD-TYPE
  CLUS_1                           16                            113
  CLUS_2                           11                             62
  CLUS_3                            9                             84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 31(20P12.1) MUTATED       10      3      3     14      0      6
  DEL PEAK 31(20P12.1) WILD-TYPE     61     51     54     45      9     39
D59V2, multiclass
        clus
vv       DEL PEAK 31(20P12.1) MUTATED DEL PEAK 31(20P12.1) WILD-TYPE
  CLUS_1                           10                             61
  CLUS_2                            3                             51
  CLUS_3                            3                             54
  CLUS_4                           14                             45
  CLUS_5                            0                              9
  CLUS_6                            6                             39
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(20P12.1) MUTATED        6      6      6
  DEL PEAK 31(20P12.1) WILD-TYPE     47     36     63
D59V3, multiclass
        clus
vv       DEL PEAK 31(20P12.1) MUTATED DEL PEAK 31(20P12.1) WILD-TYPE
  CLUS_1                            6                             47
  CLUS_2                            6                             36
  CLUS_3                            6                             63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(20P12.1) MUTATED        4      4      4      6      0
  DEL PEAK 31(20P12.1) WILD-TYPE     28     43     41     17     17
D59V4, multiclass
        clus
vv       DEL PEAK 31(20P12.1) MUTATED DEL PEAK 31(20P12.1) WILD-TYPE
  CLUS_1                            4                             28
  CLUS_2                            4                             43
  CLUS_3                            4                             41
  CLUS_4                            6                             17
  CLUS_5                            0                             17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(20P12.1) MUTATED        2      8     11     15
  DEL PEAK 31(20P12.1) WILD-TYPE     52     92     58     54
D59V5, multiclass
        clus
vv       DEL PEAK 31(20P12.1) MUTATED DEL PEAK 31(20P12.1) WILD-TYPE
  CLUS_1                            2                             52
  CLUS_2                            8                             92
  CLUS_3                           11                             58
  CLUS_4                           15                             54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(20P12.1) MUTATED        9     19      8
  DEL PEAK 31(20P12.1) WILD-TYPE     63    166     27
D59V6, multiclass
        clus
vv       DEL PEAK 31(20P12.1) MUTATED DEL PEAK 31(20P12.1) WILD-TYPE
  CLUS_1                            9                             63
  CLUS_2                           19                            166
  CLUS_3                            8                             27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(20P12.1) MUTATED        8      7     21
  DEL PEAK 31(20P12.1) WILD-TYPE     91     70     98
D59V7, multiclass
        clus
vv       DEL PEAK 31(20P12.1) MUTATED DEL PEAK 31(20P12.1) WILD-TYPE
  CLUS_1                            8                             91
  CLUS_2                            7                             70
  CLUS_3                           21                             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(20P12.1) MUTATED        9      8      7      2     10
  DEL PEAK 31(20P12.1) WILD-TYPE     51     87     65     23     33
D59V8, multiclass
        clus
vv       DEL PEAK 31(20P12.1) MUTATED DEL PEAK 31(20P12.1) WILD-TYPE
  CLUS_1                            9                             51
  CLUS_2                            8                             87
  CLUS_3                            7                             65
  CLUS_4                            2                             23
  CLUS_5                           10                             33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(20P12.1) MUTATED       13      6     15
  DEL PEAK 31(20P12.1) WILD-TYPE    112     71     65
D59V9, multiclass
        clus
vv       DEL PEAK 31(20P12.1) MUTATED DEL PEAK 31(20P12.1) WILD-TYPE
  CLUS_1                           13                            112
  CLUS_2                            6                             71
  CLUS_3                           15                             65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(20P12.1) MUTATED        8      3      5     18
  DEL PEAK 31(20P12.1) WILD-TYPE     56     47     21    124
D59V10, multiclass
        clus
vv       DEL PEAK 31(20P12.1) MUTATED DEL PEAK 31(20P12.1) WILD-TYPE
  CLUS_1                            8                             56
  CLUS_2                            3                             47
  CLUS_3                            5                             21
  CLUS_4                           18                            124
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(60) Variable = DEL PEAK 32(21Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(21Q11.2) MUTATED       13     24     21
  DEL PEAK 32(21Q11.2) WILD-TYPE    116     49     72
D60V1, multiclass
        clus
vv       DEL PEAK 32(21Q11.2) MUTATED DEL PEAK 32(21Q11.2) WILD-TYPE
  CLUS_1                           13                            116
  CLUS_2                           24                             49
  CLUS_3                           21                             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 32(21Q11.2) MUTATED       15      7     10     18      2      6
  DEL PEAK 32(21Q11.2) WILD-TYPE     56     47     47     41      7     39
D60V2, multiclass
        clus
vv       DEL PEAK 32(21Q11.2) MUTATED DEL PEAK 32(21Q11.2) WILD-TYPE
  CLUS_1                           15                             56
  CLUS_2                            7                             47
  CLUS_3                           10                             47
  CLUS_4                           18                             41
  CLUS_5                            2                              7
  CLUS_6                            6                             39
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(21Q11.2) MUTATED       12      5     12
  DEL PEAK 32(21Q11.2) WILD-TYPE     41     37     57
D60V3, multiclass
        clus
vv       DEL PEAK 32(21Q11.2) MUTATED DEL PEAK 32(21Q11.2) WILD-TYPE
  CLUS_1                           12                             41
  CLUS_2                            5                             37
  CLUS_3                           12                             57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(21Q11.2) MUTATED        6      7      2      8      6
  DEL PEAK 32(21Q11.2) WILD-TYPE     26     40     43     15     11
D60V4, multiclass
        clus
vv       DEL PEAK 32(21Q11.2) MUTATED DEL PEAK 32(21Q11.2) WILD-TYPE
  CLUS_1                            6                             26
  CLUS_2                            7                             40
  CLUS_3                            2                             43
  CLUS_4                            8                             15
  CLUS_5                            6                             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(21Q11.2) MUTATED       15     14     11     18
  DEL PEAK 32(21Q11.2) WILD-TYPE     39     86     58     51
D60V5, multiclass
        clus
vv       DEL PEAK 32(21Q11.2) MUTATED DEL PEAK 32(21Q11.2) WILD-TYPE
  CLUS_1                           15                             39
  CLUS_2                           14                             86
  CLUS_3                           11                             58
  CLUS_4                           18                             51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(21Q11.2) MUTATED       14     30     14
  DEL PEAK 32(21Q11.2) WILD-TYPE     58    155     21
D60V6, multiclass
        clus
vv       DEL PEAK 32(21Q11.2) MUTATED DEL PEAK 32(21Q11.2) WILD-TYPE
  CLUS_1                           14                             58
  CLUS_2                           30                            155
  CLUS_3                           14                             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(21Q11.2) MUTATED       19     12     27
  DEL PEAK 32(21Q11.2) WILD-TYPE     80     65     92
D60V7, multiclass
        clus
vv       DEL PEAK 32(21Q11.2) MUTATED DEL PEAK 32(21Q11.2) WILD-TYPE
  CLUS_1                           19                             80
  CLUS_2                           12                             65
  CLUS_3                           27                             92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(21Q11.2) MUTATED        9     17     12      8     12
  DEL PEAK 32(21Q11.2) WILD-TYPE     51     78     60     17     31
D60V8, multiclass
        clus
vv       DEL PEAK 32(21Q11.2) MUTATED DEL PEAK 32(21Q11.2) WILD-TYPE
  CLUS_1                            9                             51
  CLUS_2                           17                             78
  CLUS_3                           12                             60
  CLUS_4                            8                             17
  CLUS_5                           12                             31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(21Q11.2) MUTATED       27     17     12
  DEL PEAK 32(21Q11.2) WILD-TYPE     98     60     68
D60V9, multiclass
        clus
vv       DEL PEAK 32(21Q11.2) MUTATED DEL PEAK 32(21Q11.2) WILD-TYPE
  CLUS_1                           27                             98
  CLUS_2                           17                             60
  CLUS_3                           12                             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(21Q11.2) MUTATED       13     10      5     28
  DEL PEAK 32(21Q11.2) WILD-TYPE     51     40     21    114
D60V10, multiclass
        clus
vv       DEL PEAK 32(21Q11.2) MUTATED DEL PEAK 32(21Q11.2) WILD-TYPE
  CLUS_1                           13                             51
  CLUS_2                           10                             40
  CLUS_3                            5                             21
  CLUS_4                           28                            114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(61) Variable = DEL PEAK 33(22Q13.32) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(22Q13.32) MUTATED       28     32     28
  DEL PEAK 33(22Q13.32) WILD-TYPE    101     41     65
D61V1, multiclass
        clus
vv       DEL PEAK 33(22Q13.32) MUTATED DEL PEAK 33(22Q13.32) WILD-TYPE
  CLUS_1                            28                             101
  CLUS_2                            32                              41
  CLUS_3                            28                              65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 33(22Q13.32) MUTATED       21     16     14     24      2     11
  DEL PEAK 33(22Q13.32) WILD-TYPE     50     38     43     35      7     34
D61V2, multiclass
        clus
vv       DEL PEAK 33(22Q13.32) MUTATED DEL PEAK 33(22Q13.32) WILD-TYPE
  CLUS_1                            21                              50
  CLUS_2                            16                              38
  CLUS_3                            14                              43
  CLUS_4                            24                              35
  CLUS_5                             2                               7
  CLUS_6                            11                              34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(22Q13.32) MUTATED       15     18     16
  DEL PEAK 33(22Q13.32) WILD-TYPE     38     24     53
D61V3, multiclass
        clus
vv       DEL PEAK 33(22Q13.32) MUTATED DEL PEAK 33(22Q13.32) WILD-TYPE
  CLUS_1                            15                              38
  CLUS_2                            18                              24
  CLUS_3                            16                              53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(22Q13.32) MUTATED        7     15     13      7      7
  DEL PEAK 33(22Q13.32) WILD-TYPE     25     32     32     16     10
D61V4, multiclass
        clus
vv       DEL PEAK 33(22Q13.32) MUTATED DEL PEAK 33(22Q13.32) WILD-TYPE
  CLUS_1                             7                              25
  CLUS_2                            15                              32
  CLUS_3                            13                              32
  CLUS_4                             7                              16
  CLUS_5                             7                              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(22Q13.32) MUTATED       13     27     22     26
  DEL PEAK 33(22Q13.32) WILD-TYPE     41     73     47     43
D61V5, multiclass
        clus
vv       DEL PEAK 33(22Q13.32) MUTATED DEL PEAK 33(22Q13.32) WILD-TYPE
  CLUS_1                            13                              41
  CLUS_2                            27                              73
  CLUS_3                            22                              47
  CLUS_4                            26                              43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(22Q13.32) MUTATED       23     48     17
  DEL PEAK 33(22Q13.32) WILD-TYPE     49    137     18
D61V6, multiclass
        clus
vv       DEL PEAK 33(22Q13.32) MUTATED DEL PEAK 33(22Q13.32) WILD-TYPE
  CLUS_1                            23                              49
  CLUS_2                            48                             137
  CLUS_3                            17                              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(22Q13.32) MUTATED       30     22     36
  DEL PEAK 33(22Q13.32) WILD-TYPE     69     55     83
D61V7, multiclass
        clus
vv       DEL PEAK 33(22Q13.32) MUTATED DEL PEAK 33(22Q13.32) WILD-TYPE
  CLUS_1                            30                              69
  CLUS_2                            22                              55
  CLUS_3                            36                              83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(22Q13.32) MUTATED       21     25     19      9     14
  DEL PEAK 33(22Q13.32) WILD-TYPE     39     70     53     16     29
D61V8, multiclass
        clus
vv       DEL PEAK 33(22Q13.32) MUTATED DEL PEAK 33(22Q13.32) WILD-TYPE
  CLUS_1                            21                              39
  CLUS_2                            25                              70
  CLUS_3                            19                              53
  CLUS_4                             9                              16
  CLUS_5                            14                              29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(22Q13.32) MUTATED       37     23     23
  DEL PEAK 33(22Q13.32) WILD-TYPE     88     54     57
D61V9, multiclass
        clus
vv       DEL PEAK 33(22Q13.32) MUTATED DEL PEAK 33(22Q13.32) WILD-TYPE
  CLUS_1                            37                              88
  CLUS_2                            23                              54
  CLUS_3                            23                              57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(22Q13.32) MUTATED       20     15      6     42
  DEL PEAK 33(22Q13.32) WILD-TYPE     44     35     20    100
D61V10, multiclass
        clus
vv       DEL PEAK 33(22Q13.32) MUTATED DEL PEAK 33(22Q13.32) WILD-TYPE
  CLUS_1                            20                              44
  CLUS_2                            15                              35
  CLUS_3                             6                              20
  CLUS_4                            42                             100
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(62) Variable = DEL PEAK 34(XP11.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(XP11.3) MUTATED       22     30     20
  DEL PEAK 34(XP11.3) WILD-TYPE    107     43     73
D62V1, multiclass
        clus
vv       DEL PEAK 34(XP11.3) MUTATED DEL PEAK 34(XP11.3) WILD-TYPE
  CLUS_1                          22                           107
  CLUS_2                          30                            43
  CLUS_3                          20                            73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 34(XP11.3) MUTATED       12     18      6     24      4      8
  DEL PEAK 34(XP11.3) WILD-TYPE     59     36     51     35      5     37
D62V2, multiclass
        clus
vv       DEL PEAK 34(XP11.3) MUTATED DEL PEAK 34(XP11.3) WILD-TYPE
  CLUS_1                          12                            59
  CLUS_2                          18                            36
  CLUS_3                           6                            51
  CLUS_4                          24                            35
  CLUS_5                           4                             5
  CLUS_6                           8                            37
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(XP11.3) MUTATED       10     11     16
  DEL PEAK 34(XP11.3) WILD-TYPE     43     31     53
D62V3, multiclass
        clus
vv       DEL PEAK 34(XP11.3) MUTATED DEL PEAK 34(XP11.3) WILD-TYPE
  CLUS_1                          10                            43
  CLUS_2                          11                            31
  CLUS_3                          16                            53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 34(XP11.3) MUTATED        6     10     14      4      3
  DEL PEAK 34(XP11.3) WILD-TYPE     26     37     31     19     14
D62V4, multiclass
        clus
vv       DEL PEAK 34(XP11.3) MUTATED DEL PEAK 34(XP11.3) WILD-TYPE
  CLUS_1                           6                            26
  CLUS_2                          10                            37
  CLUS_3                          14                            31
  CLUS_4                           4                            19
  CLUS_5                           3                            14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(XP11.3) MUTATED       12     22     13     25
  DEL PEAK 34(XP11.3) WILD-TYPE     42     78     56     44
D62V5, multiclass
        clus
vv       DEL PEAK 34(XP11.3) MUTATED DEL PEAK 34(XP11.3) WILD-TYPE
  CLUS_1                          12                            42
  CLUS_2                          22                            78
  CLUS_3                          13                            56
  CLUS_4                          25                            44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(XP11.3) MUTATED       13     48     11
  DEL PEAK 34(XP11.3) WILD-TYPE     59    137     24
D62V6, multiclass
        clus
vv       DEL PEAK 34(XP11.3) MUTATED DEL PEAK 34(XP11.3) WILD-TYPE
  CLUS_1                          13                            59
  CLUS_2                          48                           137
  CLUS_3                          11                            24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(XP11.3) MUTATED       22      8     42
  DEL PEAK 34(XP11.3) WILD-TYPE     77     69     77
D62V7, multiclass
        clus
vv       DEL PEAK 34(XP11.3) MUTATED DEL PEAK 34(XP11.3) WILD-TYPE
  CLUS_1                          22                            77
  CLUS_2                           8                            69
  CLUS_3                          42                            77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 34(XP11.3) MUTATED       11     28     10      9     14
  DEL PEAK 34(XP11.3) WILD-TYPE     49     67     62     16     29
D62V8, multiclass
        clus
vv       DEL PEAK 34(XP11.3) MUTATED DEL PEAK 34(XP11.3) WILD-TYPE
  CLUS_1                          11                            49
  CLUS_2                          28                            67
  CLUS_3                          10                            62
  CLUS_4                           9                            16
  CLUS_5                          14                            29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(XP11.3) MUTATED       29     10     29
  DEL PEAK 34(XP11.3) WILD-TYPE     96     67     51
D62V9, multiclass
        clus
vv       DEL PEAK 34(XP11.3) MUTATED DEL PEAK 34(XP11.3) WILD-TYPE
  CLUS_1                          29                            96
  CLUS_2                          10                            67
  CLUS_3                          29                            51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(XP11.3) MUTATED       13      7      7     41
  DEL PEAK 34(XP11.3) WILD-TYPE     51     43     19    101
D62V10, multiclass
        clus
vv       DEL PEAK 34(XP11.3) MUTATED DEL PEAK 34(XP11.3) WILD-TYPE
  CLUS_1                          13                            51
  CLUS_2                           7                            43
  CLUS_3                           7                            19
  CLUS_4                          41                           101
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(63) Variable = DEL PEAK 35(XQ21.33) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(XQ21.33) MUTATED       23     21     16
  DEL PEAK 35(XQ21.33) WILD-TYPE    106     52     77
D63V1, multiclass
        clus
vv       DEL PEAK 35(XQ21.33) MUTATED DEL PEAK 35(XQ21.33) WILD-TYPE
  CLUS_1                           23                            106
  CLUS_2                           21                             52
  CLUS_3                           16                             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 35(XQ21.33) MUTATED       12     16      6     13      4      9
  DEL PEAK 35(XQ21.33) WILD-TYPE     59     38     51     46      5     36
D63V2, multiclass
        clus
vv       DEL PEAK 35(XQ21.33) MUTATED DEL PEAK 35(XQ21.33) WILD-TYPE
  CLUS_1                           12                             59
  CLUS_2                           16                             38
  CLUS_3                            6                             51
  CLUS_4                           13                             46
  CLUS_5                            4                              5
  CLUS_6                            9                             36
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(XQ21.33) MUTATED        6     10     14
  DEL PEAK 35(XQ21.33) WILD-TYPE     47     32     55
D63V3, multiclass
        clus
vv       DEL PEAK 35(XQ21.33) MUTATED DEL PEAK 35(XQ21.33) WILD-TYPE
  CLUS_1                            6                             47
  CLUS_2                           10                             32
  CLUS_3                           14                             55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 35(XQ21.33) MUTATED        2      9     14      5      0
  DEL PEAK 35(XQ21.33) WILD-TYPE     30     38     31     18     17
D63V4, multiclass
        clus
vv       DEL PEAK 35(XQ21.33) MUTATED DEL PEAK 35(XQ21.33) WILD-TYPE
  CLUS_1                            2                             30
  CLUS_2                            9                             38
  CLUS_3                           14                             31
  CLUS_4                            5                             18
  CLUS_5                            0                             17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(XQ21.33) MUTATED       10     20     14     16
  DEL PEAK 35(XQ21.33) WILD-TYPE     44     80     55     53
D63V5, multiclass
        clus
vv       DEL PEAK 35(XQ21.33) MUTATED DEL PEAK 35(XQ21.33) WILD-TYPE
  CLUS_1                           10                             44
  CLUS_2                           20                             80
  CLUS_3                           14                             55
  CLUS_4                           16                             53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(XQ21.33) MUTATED       13     41      6
  DEL PEAK 35(XQ21.33) WILD-TYPE     59    144     29
D63V6, multiclass
        clus
vv       DEL PEAK 35(XQ21.33) MUTATED DEL PEAK 35(XQ21.33) WILD-TYPE
  CLUS_1                           13                             59
  CLUS_2                           41                            144
  CLUS_3                            6                             29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(XQ21.33) MUTATED       17     13     30
  DEL PEAK 35(XQ21.33) WILD-TYPE     82     64     89
D63V7, multiclass
        clus
vv       DEL PEAK 35(XQ21.33) MUTATED DEL PEAK 35(XQ21.33) WILD-TYPE
  CLUS_1                           17                             82
  CLUS_2                           13                             64
  CLUS_3                           30                             89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 35(XQ21.33) MUTATED       13     21     13      4      9
  DEL PEAK 35(XQ21.33) WILD-TYPE     47     74     59     21     34
D63V8, multiclass
        clus
vv       DEL PEAK 35(XQ21.33) MUTATED DEL PEAK 35(XQ21.33) WILD-TYPE
  CLUS_1                           13                             47
  CLUS_2                           21                             74
  CLUS_3                           13                             59
  CLUS_4                            4                             21
  CLUS_5                            9                             34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(XQ21.33) MUTATED       25     11     23
  DEL PEAK 35(XQ21.33) WILD-TYPE    100     66     57
D63V9, multiclass
        clus
vv       DEL PEAK 35(XQ21.33) MUTATED DEL PEAK 35(XQ21.33) WILD-TYPE
  CLUS_1                           25                            100
  CLUS_2                           11                             66
  CLUS_3                           23                             57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(XQ21.33) MUTATED       13      8      7     31
  DEL PEAK 35(XQ21.33) WILD-TYPE     51     42     19    111
D63V10, multiclass
        clus
vv       DEL PEAK 35(XQ21.33) MUTATED DEL PEAK 35(XQ21.33) WILD-TYPE
  CLUS_1                           13                             51
  CLUS_2                            8                             42
  CLUS_3                            7                             19
  CLUS_4                           31                            111
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
