Pipeline Input Name	Archive Result File REF	Comment [TCGA Archive Name]	Protocol REF	Data Transformation Name	Derived Data File	Comment [TCGA Data Type]	Comment [TCGA Data Level]	Comment [TCGA File Type]	Comment [TCGA Archive Name]	Comment [TCGA Include for Analysis]
GDAC_miRseq_vs_mRNAseq:mirfile	CHOL-TP.miRseq_mature_RPM_log2.txt	gdac.broadinstitute.org_CHOL-TP.miRseq_Mature_Preprocess.Level_3.2015040200.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10813:12	miRseq_FindDirectTargets_2015040200	mir_genes_networks_directly.png	miR_gene_network	Level_4	png	gdac.broadinstitute.org_CHOL-TP.miRseq_FindDirectTargets.Level_4.2015040200.0.0	yes
GDAC_miRseq_vs_mRNAseq:mirfile	CHOL-TP.miRseq_mature_RPM_log2.txt	gdac.broadinstitute.org_CHOL-TP.miRseq_Mature_Preprocess.Level_3.2015040200.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10813:12	miRseq_FindDirectTargets_2015040200	nozzle.html	report	Level_4	html	gdac.broadinstitute.org_CHOL-TP.miRseq_FindDirectTargets.Level_4.2015040200.0.0	yes
GDAC_miRseq_vs_mRNAseq:mirfile	CHOL-TP.miRseq_mature_RPM_log2.txt	gdac.broadinstitute.org_CHOL-TP.miRseq_Mature_Preprocess.Level_3.2015040200.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10813:12	miRseq_FindDirectTargets_2015040200	nozzle.RData	report	Level_4	RData	gdac.broadinstitute.org_CHOL-TP.miRseq_FindDirectTargets.Level_4.2015040200.0.0	yes
GDAC_DirectTargets:mapfile	human_interactions.predicted.v2.mirbase21.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10813:12	miRseq_FindDirectTargets_2015040200	mir_genes_networks_directly.png	miR_gene_network	Level_4	png	gdac.broadinstitute.org_CHOL-TP.miRseq_FindDirectTargets.Level_4.2015040200.0.0	yes
GDAC_DirectTargets:mapfile	human_interactions.predicted.v2.mirbase21.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10813:12	miRseq_FindDirectTargets_2015040200	nozzle.html	report	Level_4	html	gdac.broadinstitute.org_CHOL-TP.miRseq_FindDirectTargets.Level_4.2015040200.0.0	yes
GDAC_DirectTargets:mapfile	human_interactions.predicted.v2.mirbase21.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10813:12	miRseq_FindDirectTargets_2015040200	nozzle.RData	report	Level_4	RData	gdac.broadinstitute.org_CHOL-TP.miRseq_FindDirectTargets.Level_4.2015040200.0.0	yes
GDAC_miRseq_vs_mRNAseq:expressionfile	CHOL-TP.uncv2.mRNAseq_RSEM_normalized_log2.txt	gdac.broadinstitute.org_CHOL-TP.mRNAseq_Preprocess.Level_3.2015040200.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10813:12	miRseq_FindDirectTargets_2015040200	mir_genes_networks_directly.png	miR_gene_network	Level_4	png	gdac.broadinstitute.org_CHOL-TP.miRseq_FindDirectTargets.Level_4.2015040200.0.0	yes
GDAC_miRseq_vs_mRNAseq:expressionfile	CHOL-TP.uncv2.mRNAseq_RSEM_normalized_log2.txt	gdac.broadinstitute.org_CHOL-TP.mRNAseq_Preprocess.Level_3.2015040200.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10813:12	miRseq_FindDirectTargets_2015040200	nozzle.html	report	Level_4	html	gdac.broadinstitute.org_CHOL-TP.miRseq_FindDirectTargets.Level_4.2015040200.0.0	yes
GDAC_miRseq_vs_mRNAseq:expressionfile	CHOL-TP.uncv2.mRNAseq_RSEM_normalized_log2.txt	gdac.broadinstitute.org_CHOL-TP.mRNAseq_Preprocess.Level_3.2015040200.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10813:12	miRseq_FindDirectTargets_2015040200	nozzle.RData	report	Level_4	RData	gdac.broadinstitute.org_CHOL-TP.miRseq_FindDirectTargets.Level_4.2015040200.0.0	yes
