Pipeline Input Name	Archive Result File REF	Comment [TCGA Archive Name]	Protocol REF	Data Transformation Name	Derived Data File	Comment [TCGA Data Type]	Comment [TCGA Data Level]	Comment [TCGA File Type]	Comment [TCGA Archive Name]	Comment [TCGA Include for Analysis]
getCNExpCorrelation:reducedseg	all_data_by_genes.txt	gdac.broadinstitute.org_COAD-TP.CopyNumber_Gistic2.Level_4.2015040200.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00289:57	Correlate_CopyNumber_vs_mRNA_2015040200	COAD-TP.CORS.tsv	Correlation_result	Level_4	tsv	gdac.broadinstitute.org_COAD-TP.Correlate_CopyNumber_vs_mRNA.Level_4.2015040200.0.0	yes
getCNExpCorrelation:reducedseg	all_data_by_genes.txt	gdac.broadinstitute.org_COAD-TP.CopyNumber_Gistic2.Level_4.2015040200.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00289:57	Correlate_CopyNumber_vs_mRNA_2015040200	STATS.QA.tsv	Correlation_result	Level_4	tsv	gdac.broadinstitute.org_COAD-TP.Correlate_CopyNumber_vs_mRNA.Level_4.2015040200.0.0	yes
getCNExpCorrelation:reducedseg	all_data_by_genes.txt	gdac.broadinstitute.org_COAD-TP.CopyNumber_Gistic2.Level_4.2015040200.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00289:57	Correlate_CopyNumber_vs_mRNA_2015040200	OUTPUT.CORS.png	Correlation-CopyNumber_Expression_miRNA	Level_4	png	gdac.broadinstitute.org_COAD-TP.Correlate_CopyNumber_vs_mRNA.Level_4.2015040200.0.0	yes
getCNExpCorrelation:reducedseg	all_data_by_genes.txt	gdac.broadinstitute.org_COAD-TP.CopyNumber_Gistic2.Level_4.2015040200.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00289:57	Correlate_CopyNumber_vs_mRNA_2015040200	nozzle.html	report	Level_4	html	gdac.broadinstitute.org_COAD-TP.Correlate_CopyNumber_vs_mRNA.Level_4.2015040200.0.0	yes
getCNExpCorrelation:reducedseg	all_data_by_genes.txt	gdac.broadinstitute.org_COAD-TP.CopyNumber_Gistic2.Level_4.2015040200.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00289:57	Correlate_CopyNumber_vs_mRNA_2015040200	nozzle.RData	report	Level_4	RData	gdac.broadinstitute.org_COAD-TP.Correlate_CopyNumber_vs_mRNA.Level_4.2015040200.0.0	yes
getCNExpCorrelation:mrnaexp	COAD-TP.medianexp.txt	gdac.broadinstitute.org_COAD-TP.mRNA_Preprocess_Median.Level_3.2015040200.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00289:57	Correlate_CopyNumber_vs_mRNA_2015040200	COAD-TP.CORS.tsv	Correlation_result	Level_4	tsv	gdac.broadinstitute.org_COAD-TP.Correlate_CopyNumber_vs_mRNA.Level_4.2015040200.0.0	yes
getCNExpCorrelation:mrnaexp	COAD-TP.medianexp.txt	gdac.broadinstitute.org_COAD-TP.mRNA_Preprocess_Median.Level_3.2015040200.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00289:57	Correlate_CopyNumber_vs_mRNA_2015040200	STATS.QA.tsv	Correlation_result	Level_4	tsv	gdac.broadinstitute.org_COAD-TP.Correlate_CopyNumber_vs_mRNA.Level_4.2015040200.0.0	yes
getCNExpCorrelation:mrnaexp	COAD-TP.medianexp.txt	gdac.broadinstitute.org_COAD-TP.mRNA_Preprocess_Median.Level_3.2015040200.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00289:57	Correlate_CopyNumber_vs_mRNA_2015040200	OUTPUT.CORS.png	Correlation-CopyNumber_Expression_miRNA	Level_4	png	gdac.broadinstitute.org_COAD-TP.Correlate_CopyNumber_vs_mRNA.Level_4.2015040200.0.0	yes
getCNExpCorrelation:mrnaexp	COAD-TP.medianexp.txt	gdac.broadinstitute.org_COAD-TP.mRNA_Preprocess_Median.Level_3.2015040200.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00289:57	Correlate_CopyNumber_vs_mRNA_2015040200	nozzle.html	report	Level_4	html	gdac.broadinstitute.org_COAD-TP.Correlate_CopyNumber_vs_mRNA.Level_4.2015040200.0.0	yes
getCNExpCorrelation:mrnaexp	COAD-TP.medianexp.txt	gdac.broadinstitute.org_COAD-TP.mRNA_Preprocess_Median.Level_3.2015040200.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00289:57	Correlate_CopyNumber_vs_mRNA_2015040200	nozzle.RData	report	Level_4	RData	gdac.broadinstitute.org_COAD-TP.Correlate_CopyNumber_vs_mRNA.Level_4.2015040200.0.0	yes
