		Clinical Features	MRNA_CNMF		MRNA_CHIERARCHICAL		CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
amp_2q33.1	92 (20%)	358	0.16501	0.278	0.11222	0.205	0.00056999	0.00231	0.00146	0.00514	0.04248	0.0923	0.04887	0.103	0.00022	0.000985	0.0022	0.00737	0.29498	0.439	0.10705	0.198	0.95201	0.98	0.67574	0.795
amp_5p13.2	88 (20%)	362	0.37981	0.535	0.18989	0.312	0.00018	0.000842	0.4394	0.595	0.00473	0.0144	0.9128	0.959	0.01311	0.0348	0.00243	0.00808	0.72995	0.831	0.66683	0.79	0.75728	0.853	0.5835	0.715
amp_5q22.3	46 (10%)	404	0.92427	0.961	1	1	0.0068899	0.0202	0.48921	0.64	0.32586	0.474	0.6363	0.764	0.18099	0.299	0.0368	0.0823	0.95014	0.98	0.70108	0.814	0.35534	0.508	0.33081	0.481
amp_6p21.1	96 (21%)	354	0.26208	0.406	3e-05	0.000169	9.9999e-06	6.04e-05	0.1064	0.198	0.50589	0.655	0.69941	0.814	0.01952	0.0485	9.9999e-05	0.000502	0.70631	0.818	0.77377	0.868	0.30687	0.453	0.40213	0.555
amp_7p21.2	255 (57%)	195	0.0092999	0.0261	9.9999e-06	6.04e-05	9.9999e-06	6.04e-05	5.9999e-05	0.000318	0.00124	0.00448	0.00164	0.00563	3e-05	0.000169	9.9999e-06	6.04e-05	0.54	0.681	0.45554	0.609	0.84084	0.911	0.03545	0.0798
amp_8p11.23	158 (35%)	292	0.3022	0.448	0.10812	0.2	9.9999e-06	6.04e-05	0.49903	0.65	0.76417	0.859	0.62613	0.755	0.11199	0.205	0.03747	0.0827	0.36033	0.512	0.26663	0.409	0.50652	0.655	0.12783	0.228
amp_8p11.21	188 (42%)	262	0.44648	0.603	0.01886	0.0473	9.9999e-06	6.04e-05	0.30658	0.453	0.24276	0.383	0.02376	0.0567	0.03889	0.0855	0.00158	0.00552	0.72266	0.828	0.32324	0.471	0.54208	0.681	0.10365	0.195
amp_8q12.1	236 (52%)	214	0.48915	0.64	0.0056999	0.017	9.9999e-06	6.04e-05	0.02851	0.0659	0.0099699	0.0276	0.00327	0.0106	0.00011	0.000542	9.9999e-06	6.04e-05	0.38299	0.536	0.03738	0.0827	0.27335	0.415	0.01254	0.0337
amp_8q24.21	260 (58%)	190	0.56248	0.697	0.02846	0.0659	9.9999e-06	6.04e-05	0.00169	0.00578	0.03895	0.0855	0.01375	0.0363	0.00021	0.000966	0.00011	0.000542	0.71531	0.824	0.03639	0.0817	0.26623	0.409	0.01469	0.0382
amp_11p15.5	94 (21%)	356	4e-05	0.000221	0.0059099	0.0175	2e-05	0.000117	0.00013	0.000637	0.00079999	0.00311	0.03373	0.0765	9.9999e-06	6.04e-05	9.9999e-06	6.04e-05	0.1084	0.2	9.9999e-06	6.04e-05	0.94257	0.975	0.27612	0.416
amp_12p13.33	111 (25%)	339	0.65262	0.779	0.79314	0.879	0.03244	0.0742	0.02096	0.0512	0.4267	0.581	0.87173	0.93	0.74946	0.848	0.84733	0.917	0.50945	0.657	0.79464	0.88	0.62905	0.757	0.85076	0.917
amp_13q12.13	275 (61%)	175	9.9999e-06	6.04e-05	9.9999e-06	6.04e-05	9.9999e-06	6.04e-05	9.9999e-06	6.04e-05	0.0053699	0.0161	0.01982	0.0491	9.9999e-06	6.04e-05	9.9999e-06	6.04e-05	0.57251	0.705	0.81043	0.89	0.39644	0.552	0.01591	0.0407
amp_13q22.1	277 (62%)	173	9.9999e-05	0.000502	9.9999e-06	6.04e-05	9.9999e-06	6.04e-05	9.9999e-06	6.04e-05	0.0089399	0.0253	0.04855	0.103	9.9999e-06	6.04e-05	9.9999e-06	6.04e-05	0.45546	0.609	0.996	1	0.39908	0.552	0.076329	0.15
amp_16p11.2	126 (28%)	324	0.00050999	0.0021	9.9999e-06	6.04e-05	9.9999e-06	6.04e-05	0.0093699	0.0262	0.03121	0.0716	0.12467	0.224	0.00146	0.00514	9.9999e-06	6.04e-05	0.89127	0.943	0.14186	0.247	0.95889	0.985	0.062259	0.127
amp_16q12.1	111 (25%)	339	5e-05	0.000271	9.9999e-06	6.04e-05	9.9999e-06	6.04e-05	0.02783	0.065	0.10914	0.2	0.18743	0.309	0.00111	0.0041	9.9999e-06	6.04e-05	0.97567	0.996	0.081729	0.16	0.55807	0.694	0.02447	0.0581
amp_17p11.2	44 (10%)	406	0.2637	0.406	0.00397	0.0124	0.01221	0.0329	0.081109	0.159	0.0039	0.0123	0.060899	0.125	0.075239	0.149	0.2248	0.359	0.5436	0.682	0.80802	0.889	0.17459	0.291	0.065759	0.132
amp_17q12	114 (25%)	336	0.02639	0.0623	0.01435	0.0376	9.9999e-06	6.04e-05	0.00017	0.000809	0.14139	0.246	0.00275	0.00904	9.9999e-06	6.04e-05	0.00128	0.00461	0.03699	0.0823	0.01407	0.037	0.53093	0.675	0.55952	0.695
amp_17q24.1	106 (24%)	344	0.01691	0.0431	0.0072799	0.0213	9.9999e-06	6.04e-05	3e-05	0.000169	0.061959	0.126	0.00251	0.00831	9.9999e-06	6.04e-05	3e-05	0.000169	0.01196	0.0324	0.053759	0.112	0.20922	0.339	0.53232	0.676
amp_19p13.2	75 (17%)	375	0.068289	0.137	0.054379	0.113	3e-05	0.000169	0.02698	0.0633	0.67535	0.795	0.3826	0.536	0.46282	0.614	0.00042	0.00177	0.34825	0.501	0.43815	0.595	0.10538	0.196	0.02318	0.0555
amp_19q13.11	95 (21%)	355	0.18237	0.301	0.0308	0.0708	8.9999e-05	0.000457	0.1785	0.296	0.03381	0.0765	0.31152	0.457	0.37498	0.529	2e-04	0.000925	0.46282	0.614	0.55581	0.692	0.01838	0.0463	0.0016	0.00552
amp_20p12.1	208 (46%)	242	0.04573	0.0978	0.00112	0.00412	9.9999e-06	6.04e-05	0.071499	0.142	0.0089299	0.0253	0.26409	0.406	0.02247	0.0542	9.9999e-06	6.04e-05	0.26313	0.406	0.33835	0.491	0.2777	0.417	0.523	0.671
amp_20p11.21	252 (56%)	198	0.00191	0.00645	2e-05	0.000117	9.9999e-06	6.04e-05	9.9999e-06	6.04e-05	0.00378	0.012	0.10432	0.195	9.9999e-06	6.04e-05	9.9999e-06	6.04e-05	0.16559	0.279	0.0369	0.0823	0.91943	0.96	0.04969	0.104
amp_20q11.21	323 (72%)	127	9.9999e-06	6.04e-05	9.9999e-06	6.04e-05	9.9999e-06	6.04e-05	9.9999e-06	6.04e-05	0.00060999	0.00243	0.00224	0.00748	9.9999e-06	6.04e-05	9.9999e-06	6.04e-05	0.82239	0.898	0.00159	0.00552	1	1	0.00432	0.0134
amp_20q12	324 (72%)	126	9.9999e-06	6.04e-05	9.9999e-06	6.04e-05	9.9999e-06	6.04e-05	9.9999e-06	6.04e-05	0.00060999	0.00243	0.00049	0.00203	9.9999e-06	6.04e-05	9.9999e-06	6.04e-05	0.77604	0.869	0.00139	0.00494	1	1	0.0057499	0.0171
amp_20q13.12	326 (72%)	124	9.9999e-06	6.04e-05	9.9999e-06	6.04e-05	9.9999e-06	6.04e-05	9.9999e-06	6.04e-05	0.00022	0.000985	0.00036	0.00157	9.9999e-06	6.04e-05	9.9999e-06	6.04e-05	0.78872	0.879	0.00256	0.00844	1	1	0.0053499	0.0161
del_1p36.11	168 (37%)	282	6.9999e-05	0.000367	0.0082599	0.0236	9.9999e-06	6.04e-05	9.9999e-06	6.04e-05	0.02271	0.0545	0.01763	0.0446	9.9999e-06	6.04e-05	9.9999e-06	6.04e-05	0.66174	0.787	0.01986	0.0491	0.92093	0.96	0.25746	0.401
del_1p33	123 (27%)	327	0.01537	0.0395	0.56306	0.697	9.9999e-06	6.04e-05	0.00080999	0.00313	0.8295	0.904	0.49575	0.646	0.00022	0.000985	9.9999e-06	6.04e-05	0.71638	0.824	0.15207	0.263	1	1	0.35376	0.507
del_1p13.1	119 (26%)	331	0.086819	0.168	0.54138	0.681	9.9999e-06	6.04e-05	0.02017	0.0497	0.67775	0.796	0.89127	0.943	0.00018	0.000842	8.9999e-05	0.000457	0.79976	0.883	0.16653	0.279	0.9523	0.98	0.6447	0.771
del_1q43	54 (12%)	396	0.061709	0.126	0.50243	0.652	9.9999e-06	6.04e-05	0.060369	0.124	0.47233	0.624	0.71523	0.824	8.9999e-05	0.000457	0.00025	0.00111	0.14079	0.246	0.00068999	0.00273	0.02864	0.0661	0.96108	0.986
del_2p21	17 (4%)	433	0.59636	0.728	0.86678	0.928	0.89693	0.946	1	1	0.80832	0.889	0.71361	0.824	0.35178	0.505	0.28411	0.424	0.092749	0.178	0.34607	0.5	NA	NA	NA	NA
del_2q22.1	24 (5%)	426	0.9736	0.995	0.53916	0.681	0.4115	0.566	0.63458	0.763	0.085149	0.166	0.36166	0.512	0.22728	0.362	0.32009	0.468	0.25256	0.395	0.16658	0.279	1	1	0.85139	0.917
del_3p26.2	72 (16%)	378	0.21795	0.35	0.23327	0.37	0.00119	0.00432	0.12606	0.226	0.72672	0.83	0.50102	0.651	0.0075099	0.0217	0.00367	0.0117	0.7392	0.838	0.78973	0.879	0.53948	0.681	0.41266	0.567
del_3p14.2	88 (20%)	362	0.55431	0.692	0.83849	0.91	0.15581	0.267	0.31973	0.468	0.52431	0.672	0.0418	0.0911	0.12401	0.224	0.04114	0.0899	0.65065	0.777	0.7011	0.814	0.12788	0.228	0.70456	0.817
del_3q26.31	46 (10%)	404	0.64022	0.767	0.53853	0.681	0.2112	0.342	0.4223	0.576	0.59931	0.73	0.83633	0.909	0.095599	0.182	0.13814	0.243	0.15402	0.265	0.81651	0.895	0.090839	0.175	0.70068	0.814
del_4p16.2	139 (31%)	311	0.00075999	0.00298	0.0016	0.00552	9.9999e-06	6.04e-05	0.00306	0.00998	0.02654	0.0624	0.159	0.27	2e-05	0.000117	9.9999e-06	6.04e-05	0.35904	0.511	0.44833	0.604	0.14453	0.251	0.23523	0.372
del_4q22.1	151 (34%)	299	0.00045	0.00188	0.00397	0.0124	9.9999e-06	6.04e-05	0.00114	0.00418	0.10299	0.194	0.15418	0.265	9.9999e-06	6.04e-05	9.9999e-06	6.04e-05	0.39153	0.547	0.17104	0.286	0.32159	0.47	0.20536	0.334
del_4q35.1	159 (35%)	291	0.00106	0.00397	0.0074499	0.0216	9.9999e-06	6.04e-05	6.9999e-05	0.000367	0.01339	0.0354	0.29704	0.441	9.9999e-06	6.04e-05	9.9999e-06	6.04e-05	0.36158	0.512	0.41464	0.568	0.54599	0.683	0.91162	0.959
del_5q12.1	106 (24%)	344	0.0011	0.00408	0.00352	0.0113	9.9999e-06	6.04e-05	0.090719	0.175	0.00085999	0.00328	0.03345	0.0761	5e-05	0.000271	7.9999e-05	0.000414	0.70815	0.819	0.56701	0.701	1	1	0.14045	0.246
del_5q21.1	127 (28%)	323	0.27753	0.417	0.04427	0.095	9.9999e-06	6.04e-05	0.050609	0.106	0.02471	0.0585	0.39912	0.552	0.0068599	0.0202	2e-04	0.000925	0.944	0.975	0.8914	0.943	0.87081	0.93	0.49456	0.646
del_5q22.2	130 (29%)	320	0.01287	0.0344	0.0091199	0.0257	9.9999e-06	6.04e-05	0.15624	0.267	0.04838	0.103	0.34056	0.493	0.00022	0.000985	0.00016	0.000766	0.91162	0.959	0.27564	0.416	0.61416	0.743	0.45783	0.61
del_6p25.3	56 (12%)	394	0.85296	0.917	0.73599	0.836	0.10883	0.2	0.03713	0.0824	0.04287	0.0929	0.57139	0.705	0.52733	0.674	0.89493	0.945	0.66544	0.789	0.93891	0.974	0.053459	0.111	0.04334	0.0937
del_6q26	62 (14%)	388	0.58589	0.717	0.3984	0.552	0.91668	0.96	0.50887	0.657	0.083229	0.162	0.22231	0.356	0.38119	0.535	0.68603	0.805	0.69737	0.814	0.93986	0.974	0.4399	0.595	0.059069	0.122
del_7q31.1	13 (3%)	437	1	1	0.5972	0.728	0.0499	0.105	0.57456	0.707	0.16514	0.278	0.46162	0.614	0.35874	0.511	0.60322	0.733	0.79239	0.879	0.83004	0.904	NA	NA	NA	NA
del_8p23.3	189 (42%)	261	0.01108	0.0301	0.00022	0.000985	9.9999e-06	6.04e-05	0.00027	0.0012	0.00469	0.0143	0.0079799	0.0229	9.9999e-06	6.04e-05	9.9999e-06	6.04e-05	0.21698	0.349	0.050979	0.106	0.89031	0.943	0.04381	0.0943
del_8p22	203 (45%)	247	0.00459	0.0141	0.00011	0.000542	9.9999e-06	6.04e-05	5.9999e-05	0.000318	0.0073999	0.0215	0.00087999	0.00334	9.9999e-06	6.04e-05	9.9999e-06	6.04e-05	0.45725	0.61	0.01526	0.0395	0.76073	0.856	0.04883	0.103
del_8q11.1	30 (7%)	420	0.26127	0.405	0.097099	0.184	0.01545	0.0396	0.86444	0.927	0.27038	0.413	0.16495	0.278	0.37493	0.529	0.075549	0.149	0.19823	0.324	0.29546	0.439	0.66379	0.789	0.89102	0.943
del_9p21.3	62 (14%)	388	0.45286	0.609	0.088399	0.171	0.00387	0.0122	0.2834	0.424	0.81961	0.896	0.41023	0.565	0.01921	0.0481	0.00132	0.00473	0.62037	0.749	0.25694	0.401	0.20044	0.327	0.57953	0.711
del_10p15.3	80 (18%)	370	0.1168	0.213	0.10392	0.195	9.9999e-06	6.04e-05	0.00084999	0.00326	0.02207	0.0534	0.14042	0.246	0.00043	0.00181	0.00014	0.000682	0.45363	0.609	0.17953	0.297	0.5249	0.672	0.02165	0.0526
del_10q21.1	98 (22%)	352	0.00367	0.0117	0.02788	0.065	9.9999e-06	6.04e-05	0.0073799	0.0215	0.069739	0.139	0.25483	0.398	9.9999e-06	6.04e-05	9.9999e-06	6.04e-05	0.75158	0.849	0.48772	0.64	0.75456	0.851	0.72917	0.831
del_10q23.31	109 (24%)	341	0.098799	0.187	0.063139	0.128	9.9999e-06	6.04e-05	0.00343	0.0111	0.14603	0.253	0.47255	0.624	0.00182	0.00618	4e-05	0.000221	0.57899	0.711	0.13478	0.239	0.3471	0.5	0.39946	0.552
del_10q25.2	109 (24%)	341	0.12452	0.224	0.01731	0.044	9.9999e-06	6.04e-05	5.9999e-05	0.000318	0.0065499	0.0194	0.085719	0.166	9.9999e-06	6.04e-05	9.9999e-06	6.04e-05	0.96253	0.986	0.48801	0.64	0.53098	0.675	0.73963	0.838
del_12p13.2	60 (13%)	390	0.01028	0.0283	0.00299	0.00979	9.9999e-06	6.04e-05	0.01086	0.0296	0.30896	0.455	0.91769	0.96	4e-04	0.00171	9.9999e-06	6.04e-05	0.79321	0.879	0.35705	0.51	0.2259	0.36	0.00197	0.00663
del_13q14.13	19 (4%)	431	0.27228	0.414	0.86366	0.927	0.24315	0.383	0.24781	0.389	0.2392	0.378	0.24859	0.39	0.92217	0.96	0.8799	0.938	0.68836	0.806	0.94307	0.975	0.44849	0.604	0.30945	0.455
del_14q31.1	150 (33%)	300	9.9999e-06	6.04e-05	7.9999e-05	0.000414	9.9999e-06	6.04e-05	5e-05	0.000271	0.00032	0.00141	0.01927	0.0481	9.9999e-06	6.04e-05	9.9999e-06	6.04e-05	0.27805	0.417	0.02052	0.0503	0.26728	0.409	0.01439	0.0376
del_15q11.2	177 (39%)	273	0.00039	0.00167	0.00079999	0.00311	9.9999e-06	6.04e-05	0.00018	0.000842	0.02137	0.052	0.063459	0.128	9.9999e-06	6.04e-05	9.9999e-06	6.04e-05	0.98097	0.999	0.77639	0.869	0.25811	0.401	0.27293	0.415
del_15q15.2	172 (38%)	278	0.00178	0.00607	0.00054999	0.00225	9.9999e-06	6.04e-05	0.00015	0.000726	0.0096299	0.0268	0.02444	0.0581	9.9999e-06	6.04e-05	9.9999e-06	6.04e-05	0.92058	0.96	0.55524	0.692	0.15611	0.267	0.16761	0.28
del_15q21.1	169 (38%)	281	0.01839	0.0463	0.01532	0.0395	9.9999e-06	6.04e-05	0.00057999	0.00233	0.01008	0.0278	0.055519	0.115	9.9999e-06	6.04e-05	9.9999e-06	6.04e-05	0.88567	0.943	0.67435	0.795	0.13582	0.24	0.12885	0.229
del_15q22.33	161 (36%)	289	0.00034	0.00149	0.00047	0.00196	9.9999e-06	6.04e-05	0.00016	0.000766	0.076879	0.151	0.03273	0.0747	9.9999e-06	6.04e-05	9.9999e-06	6.04e-05	0.7891	0.879	0.85159	0.917	0.10281	0.194	0.080019	0.157
del_16p13.3	56 (12%)	394	0.23027	0.366	0.062369	0.127	0.093089	0.178	0.21604	0.348	0.39241	0.547	0.51444	0.661	0.065159	0.131	0.068239	0.137	0.85194	0.917	0.70122	0.814	0.61394	0.743	1	1
del_16q23.1	61 (14%)	389	0.27167	0.414	0.0052699	0.0159	0.41717	0.571	0.53308	0.676	0.14087	0.246	0.61455	0.743	0.27568	0.416	0.01279	0.0343	0.52798	0.674	0.46636	0.618	0.72186	0.828	0.48233	0.636
del_17p12	254 (56%)	196	9.9999e-06	6.04e-05	9.9999e-06	6.04e-05	9.9999e-06	6.04e-05	9.9999e-06	6.04e-05	0.01306	0.0348	0.00119	0.00432	9.9999e-06	6.04e-05	9.9999e-06	6.04e-05	0.67046	0.792	0.02268	0.0545	0.6054	0.735	0.00136	0.00485
del_17q24.3	69 (15%)	381	0.095349	0.181	0.51259	0.66	0.00422	0.0131	0.12122	0.22	0.86789	0.928	0.17757	0.295	0.04386	0.0943	0.13799	0.243	0.72261	0.828	0.97067	0.993	0.80754	0.889	0.43329	0.589
del_18p11.31	246 (55%)	204	9.9999e-06	6.04e-05	9.9999e-06	6.04e-05	9.9999e-06	6.04e-05	9.9999e-06	6.04e-05	0.00083999	0.00323	0.01056	0.0289	9.9999e-06	6.04e-05	9.9999e-06	6.04e-05	0.83328	0.907	0.0098299	0.0273	0.15907	0.27	0.00372	0.0118
del_18q12.2	274 (61%)	176	9.9999e-06	6.04e-05	9.9999e-06	6.04e-05	9.9999e-06	6.04e-05	9.9999e-06	6.04e-05	0.0044	0.0135	0.00107	0.00399	9.9999e-06	6.04e-05	9.9999e-06	6.04e-05	0.91408	0.959	0.02028	0.0498	0.15233	0.263	0.00478	0.0145
del_18q21.2	287 (64%)	163	9.9999e-06	6.04e-05	9.9999e-06	6.04e-05	9.9999e-06	6.04e-05	9.9999e-06	6.04e-05	0.00072999	0.00288	0.00057999	0.00233	9.9999e-06	6.04e-05	9.9999e-06	6.04e-05	0.38105	0.535	0.03479	0.0785	0.092979	0.178	0.0076499	0.022
del_19p13.3	63 (14%)	387	0.13144	0.234	0.12402	0.224	0.00098999	0.00374	0.20878	0.339	0.98084	0.999	0.21169	0.342	0.00434	0.0134	0.00103	0.00388	0.65377	0.779	0.0084799	0.0241	0.48425	0.637	0.28097	0.421
del_20p12.1	86 (19%)	364	0.04822	0.103	0.02813	0.0654	9.9999e-06	6.04e-05	0.00039	0.00167	0.72493	0.829	0.19587	0.321	2e-05	0.000117	4e-05	0.000221	0.10456	0.195	0.01046	0.0287	0.79997	0.883	0.04757	0.102
del_21q11.2	141 (31%)	309	0.01507	0.0391	0.070999	0.141	9.9999e-06	6.04e-05	0.03931	0.0861	0.16208	0.275	0.81714	0.895	9.9999e-06	6.04e-05	0.00042	0.00177	0.93685	0.973	0.12555	0.225	0.67081	0.792	0.34637	0.5
del_22q13.32	160 (36%)	290	0.00055999	0.00228	0.00039	0.00167	9.9999e-06	6.04e-05	0.00158	0.00552	0.11258	0.205	0.20045	0.327	2e-05	0.000117	9.9999e-06	6.04e-05	0.42051	0.575	0.79142	0.879	0.73117	0.832	0.54529	0.683
