[1] "R version 2.15.3 (2013-03-01)"
[1] "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "dx" ""  
[1] "dx" " " 
[1] "dx" " " 
[1] "opt:  MRNA_EXPR"
[1] "vtyp==survival in table1 generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==binary in table1 table generation"
[1] "vtyp==multiclass in table1 generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==binary in table1 table generation"
[1] "vtyp==binary in table1 table generation"
[1] "vtyp==multiclass in table1 generation"
[1] "vtyp==multiclass in table1 generation"
[1] "vtyp==continuous in table1 table generation"
                          Clinical feature           
DAYS_TO_DEATH_OR_LAST_FUP "DAYS_TO_DEATH_OR_LAST_FUP"
YEARS_TO_BIRTH            "YEARS_TO_BIRTH"           
PRIMARY_SITE_OF_DISEASE   "PRIMARY_SITE_OF_DISEASE"  
NEOPLASM_DISEASESTAGE     "NEOPLASM_DISEASESTAGE"    
PATHOLOGY_T_STAGE         "PATHOLOGY_T_STAGE"        
PATHOLOGY_N_STAGE         "PATHOLOGY_N_STAGE"        
PATHOLOGY_M_STAGE         "PATHOLOGY_M_STAGE"        
GENDER                    "GENDER"                   
HISTOLOGICAL_TYPE         "HISTOLOGICAL_TYPE"        
COMPLETENESS_OF_RESECTION "COMPLETENESS_OF_RESECTION"
NUMBER_OF_LYMPH_NODES     "NUMBER_OF_LYMPH_NODES"    
                          Statistical test            Significant genes
DAYS_TO_DEATH_OR_LAST_FUP "Cox regression test"       "N=0"            
YEARS_TO_BIRTH            "Spearman correlation test" "N=30"           
PRIMARY_SITE_OF_DISEASE   "Wilcoxon test"             "N=30"           
NEOPLASM_DISEASESTAGE     "Kruskal-Wallis test"       "N=29"           
PATHOLOGY_T_STAGE         "Spearman correlation test" "N=30"           
PATHOLOGY_N_STAGE         "Spearman correlation test" "N=30"           
PATHOLOGY_M_STAGE         "Wilcoxon test"             "N=30"           
GENDER                    "Wilcoxon test"             "N=7"            
HISTOLOGICAL_TYPE         "Kruskal-Wallis test"       "N=30"           
COMPLETENESS_OF_RESECTION "Kruskal-Wallis test"       "N=30"           
NUMBER_OF_LYMPH_NODES     "Spearman correlation test" "N=30"           
                          Associated with               
DAYS_TO_DEATH_OR_LAST_FUP " "                           
YEARS_TO_BIRTH            "older"                       
PRIMARY_SITE_OF_DISEASE   "rectum"                      
NEOPLASM_DISEASESTAGE     " "                           
PATHOLOGY_T_STAGE         "higher stage"                
PATHOLOGY_N_STAGE         "higher stage"                
PATHOLOGY_M_STAGE         "class1"                      
GENDER                    "male"                        
HISTOLOGICAL_TYPE         " "                           
COMPLETENESS_OF_RESECTION " "                           
NUMBER_OF_LYMPH_NODES     "higher number_of_lymph_nodes"
                          &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
DAYS_TO_DEATH_OR_LAST_FUP " "                                                                                       
YEARS_TO_BIRTH            "N=22"                                                                                    
PRIMARY_SITE_OF_DISEASE   "N=30"                                                                                    
NEOPLASM_DISEASESTAGE     " "                                                                                       
PATHOLOGY_T_STAGE         "N=28"                                                                                    
PATHOLOGY_N_STAGE         "N=15"                                                                                    
PATHOLOGY_M_STAGE         "N=30"                                                                                    
GENDER                    "N=7"                                                                                     
HISTOLOGICAL_TYPE         " "                                                                                       
COMPLETENESS_OF_RESECTION " "                                                                                       
NUMBER_OF_LYMPH_NODES     "N=15"                                                                                    
                          Associated with                     
DAYS_TO_DEATH_OR_LAST_FUP " "                           " "   
YEARS_TO_BIRTH            "younger"                     "N=8" 
PRIMARY_SITE_OF_DISEASE   "colon"                       "N=0" 
NEOPLASM_DISEASESTAGE     " "                           " "   
PATHOLOGY_T_STAGE         "lower stage"                 "N=2" 
PATHOLOGY_N_STAGE         "lower stage"                 "N=15"
PATHOLOGY_M_STAGE         "class0"                      "N=0" 
GENDER                    "female"                      "N=0" 
HISTOLOGICAL_TYPE         " "                           " "   
COMPLETENESS_OF_RESECTION " "                           " "   
NUMBER_OF_LYMPH_NODES     "lower number_of_lymph_nodes" "N=15"
[1] "vtyp==survival in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==binary in basici table generation"
[1] "vtyp==multiclass in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==binary in basici table generation"
[1] "vtyp==binary in basici table generation"
[1] "vtyp==multiclass in basici table generation"
[1] "vtyp==multiclass in basici table generation"
[1] "vtyp==continuous in basici table generation"
