[1] "ofn"          "-oTGBMLGG-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/GBMLGG-TP/15078950/GBMLGG-TP.merged_data.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/GBMLGG-TP/15101907/transformed.cor.cli.txt"

nPatients in clinical file=1067, in cluster file=1090, common to both=1042
[1]   79 1042
[1] "AMP PEAK  1(1P36.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  1(1P36.21) MUTATED AMP PEAK  1(1P36.21) WILD-TYPE 
                           101                            941 
  AMP PEAK  1(1P36.21) MUTATED AMP PEAK  1(1P36.21) WILD-TYPE 
                           101                            941 
[1] "AMP PEAK  2(1Q22) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  2(1Q22) MUTATED AMP PEAK  2(1Q22) WILD-TYPE 
                        140                         902 
  AMP PEAK  2(1Q22) MUTATED AMP PEAK  2(1Q22) WILD-TYPE 
                        140                         902 
[1] "AMP PEAK  3(1Q32.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  3(1Q32.1) MUTATED AMP PEAK  3(1Q32.1) WILD-TYPE 
                          199                           843 
  AMP PEAK  3(1Q32.1) MUTATED AMP PEAK  3(1Q32.1) WILD-TYPE 
                          199                           843 
[1] "AMP PEAK  4(1Q44) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  4(1Q44) MUTATED AMP PEAK  4(1Q44) WILD-TYPE 
                        124                         918 
  AMP PEAK  4(1Q44) MUTATED AMP PEAK  4(1Q44) WILD-TYPE 
                        124                         918 
[1] "AMP PEAK  5(2P24.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  5(2P24.3) MUTATED AMP PEAK  5(2P24.3) WILD-TYPE 
                           70                           972 
  AMP PEAK  5(2P24.3) MUTATED AMP PEAK  5(2P24.3) WILD-TYPE 
                           70                           972 
[1] "AMP PEAK  6(3P25.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  6(3P25.3) MUTATED AMP PEAK  6(3P25.3) WILD-TYPE 
                           82                           960 
  AMP PEAK  6(3P25.3) MUTATED AMP PEAK  6(3P25.3) WILD-TYPE 
                           82                           960 
[1] "AMP PEAK  7(3Q26.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  7(3Q26.33) MUTATED AMP PEAK  7(3Q26.33) WILD-TYPE 
                           127                            915 
  AMP PEAK  7(3Q26.33) MUTATED AMP PEAK  7(3Q26.33) WILD-TYPE 
                           127                            915 
[1] "AMP PEAK  8(4P16.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  8(4P16.3) MUTATED AMP PEAK  8(4P16.3) WILD-TYPE 
                           69                           973 
  AMP PEAK  8(4P16.3) MUTATED AMP PEAK  8(4P16.3) WILD-TYPE 
                           69                           973 
[1] "AMP PEAK  9(4Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  9(4Q12) MUTATED AMP PEAK  9(4Q12) WILD-TYPE 
                        134                         908 
  AMP PEAK  9(4Q12) MUTATED AMP PEAK  9(4Q12) WILD-TYPE 
                        134                         908 
[1] "AMP PEAK 10(5P15.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 10(5P15.33) MUTATED AMP PEAK 10(5P15.33) WILD-TYPE 
                            74                            968 
  AMP PEAK 10(5P15.33) MUTATED AMP PEAK 10(5P15.33) WILD-TYPE 
                            74                            968 
[1] "AMP PEAK 11(7P11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE 
                          617                           425 
  AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE 
                          617                           425 
[1] "AMP PEAK 12(7Q11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 12(7Q11.21) MUTATED AMP PEAK 12(7Q11.21) WILD-TYPE 
                           566                            476 
  AMP PEAK 12(7Q11.21) MUTATED AMP PEAK 12(7Q11.21) WILD-TYPE 
                           566                            476 
[1] "AMP PEAK 13(7Q21.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 13(7Q21.2) MUTATED AMP PEAK 13(7Q21.2) WILD-TYPE 
                          620                           422 
  AMP PEAK 13(7Q21.2) MUTATED AMP PEAK 13(7Q21.2) WILD-TYPE 
                          620                           422 
[1] "AMP PEAK 14(7Q31.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 14(7Q31.2) MUTATED AMP PEAK 14(7Q31.2) WILD-TYPE 
                          629                           413 
  AMP PEAK 14(7Q31.2) MUTATED AMP PEAK 14(7Q31.2) WILD-TYPE 
                          629                           413 
[1] "AMP PEAK 15(7Q32.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 15(7Q32.3) MUTATED AMP PEAK 15(7Q32.3) WILD-TYPE 
                          640                           402 
  AMP PEAK 15(7Q32.3) MUTATED AMP PEAK 15(7Q32.3) WILD-TYPE 
                          640                           402 
[1] "AMP PEAK 16(8Q24.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 16(8Q24.21) MUTATED AMP PEAK 16(8Q24.21) WILD-TYPE 
                           161                            881 
  AMP PEAK 16(8Q24.21) MUTATED AMP PEAK 16(8Q24.21) WILD-TYPE 
                           161                            881 
[1] "AMP PEAK 17(9Q34.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 17(9Q34.3) MUTATED AMP PEAK 17(9Q34.3) WILD-TYPE 
                          136                           906 
  AMP PEAK 17(9Q34.3) MUTATED AMP PEAK 17(9Q34.3) WILD-TYPE 
                          136                           906 
[1] "AMP PEAK 18(10P15.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 18(10P15.1) MUTATED AMP PEAK 18(10P15.1) WILD-TYPE 
                            84                            958 
  AMP PEAK 18(10P15.1) MUTATED AMP PEAK 18(10P15.1) WILD-TYPE 
                            84                            958 
[1] "AMP PEAK 19(11P13) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 19(11P13) MUTATED AMP PEAK 19(11P13) WILD-TYPE 
                          58                          984 
  AMP PEAK 19(11P13) MUTATED AMP PEAK 19(11P13) WILD-TYPE 
                          58                          984 
[1] "AMP PEAK 20(11Q24.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 20(11Q24.1) MUTATED AMP PEAK 20(11Q24.1) WILD-TYPE 
                           107                            935 
  AMP PEAK 20(11Q24.1) MUTATED AMP PEAK 20(11Q24.1) WILD-TYPE 
                           107                            935 
[1] "AMP PEAK 21(12P13.32) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 21(12P13.32) MUTATED AMP PEAK 21(12P13.32) WILD-TYPE 
                            145                             897 
  AMP PEAK 21(12P13.32) MUTATED AMP PEAK 21(12P13.32) WILD-TYPE 
                            145                             897 
[1] "AMP PEAK 22(12Q14.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 22(12Q14.1) MUTATED AMP PEAK 22(12Q14.1) WILD-TYPE 
                           168                            874 
  AMP PEAK 22(12Q14.1) MUTATED AMP PEAK 22(12Q14.1) WILD-TYPE 
                           168                            874 
[1] "AMP PEAK 23(12Q15) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 23(12Q15) MUTATED AMP PEAK 23(12Q15) WILD-TYPE 
                         109                          933 
  AMP PEAK 23(12Q15) MUTATED AMP PEAK 23(12Q15) WILD-TYPE 
                         109                          933 
[1] "AMP PEAK 24(13Q34) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 24(13Q34) MUTATED AMP PEAK 24(13Q34) WILD-TYPE 
                          53                          989 
  AMP PEAK 24(13Q34) MUTATED AMP PEAK 24(13Q34) WILD-TYPE 
                          53                          989 
[1] "AMP PEAK 25(14Q32.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 25(14Q32.33) MUTATED AMP PEAK 25(14Q32.33) WILD-TYPE 
                             44                             998 
  AMP PEAK 25(14Q32.33) MUTATED AMP PEAK 25(14Q32.33) WILD-TYPE 
                             44                             998 
[1] "AMP PEAK 26(17P13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 26(17P13.2) MUTATED AMP PEAK 26(17P13.2) WILD-TYPE 
                            72                            970 
  AMP PEAK 26(17P13.2) MUTATED AMP PEAK 26(17P13.2) WILD-TYPE 
                            72                            970 
[1] "AMP PEAK 27(17Q25.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 27(17Q25.1) MUTATED AMP PEAK 27(17Q25.1) WILD-TYPE 
                           122                            920 
  AMP PEAK 27(17Q25.1) MUTATED AMP PEAK 27(17Q25.1) WILD-TYPE 
                           122                            920 
[1] "AMP PEAK 28(19P13.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 28(19P13.3) MUTATED AMP PEAK 28(19P13.3) WILD-TYPE 
                           362                            680 
  AMP PEAK 28(19P13.3) MUTATED AMP PEAK 28(19P13.3) WILD-TYPE 
                           362                            680 
[1] "AMP PEAK 29(19P13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 29(19P13.2) MUTATED AMP PEAK 29(19P13.2) WILD-TYPE 
                           358                            684 
  AMP PEAK 29(19P13.2) MUTATED AMP PEAK 29(19P13.2) WILD-TYPE 
                           358                            684 
[1] "AMP PEAK 30(19Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 30(19Q12) MUTATED AMP PEAK 30(19Q12) WILD-TYPE 
                         240                          802 
  AMP PEAK 30(19Q12) MUTATED AMP PEAK 30(19Q12) WILD-TYPE 
                         240                          802 
[1] "AMP PEAK 31(19Q13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 31(19Q13.2) MUTATED AMP PEAK 31(19Q13.2) WILD-TYPE 
                           227                            815 
  AMP PEAK 31(19Q13.2) MUTATED AMP PEAK 31(19Q13.2) WILD-TYPE 
                           227                            815 
[1] "AMP PEAK 32(XP11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 32(XP11.21) MUTATED AMP PEAK 32(XP11.21) WILD-TYPE 
                            98                            944 
  AMP PEAK 32(XP11.21) MUTATED AMP PEAK 32(XP11.21) WILD-TYPE 
                            98                            944 
[1] "DEL PEAK  1(1P36.32) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE 
                           299                            743 
  DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE 
                           299                            743 
[1] "DEL PEAK  2(1P36.23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(1P36.23) MUTATED DEL PEAK  2(1P36.23) WILD-TYPE 
                           328                            714 
  DEL PEAK  2(1P36.23) MUTATED DEL PEAK  2(1P36.23) WILD-TYPE 
                           328                            714 
[1] "DEL PEAK  3(1P32.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(1P32.3) MUTATED DEL PEAK  3(1P32.3) WILD-TYPE 
                          241                           801 
  DEL PEAK  3(1P32.3) MUTATED DEL PEAK  3(1P32.3) WILD-TYPE 
                          241                           801 
[1] "DEL PEAK  4(1P22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(1P22.1) MUTATED DEL PEAK  4(1P22.1) WILD-TYPE 
                          220                           822 
  DEL PEAK  4(1P22.1) MUTATED DEL PEAK  4(1P22.1) WILD-TYPE 
                          220                           822 
[1] "DEL PEAK  5(1Q42.11) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(1Q42.11) MUTATED DEL PEAK  5(1Q42.11) WILD-TYPE 
                            75                            967 
  DEL PEAK  5(1Q42.11) MUTATED DEL PEAK  5(1Q42.11) WILD-TYPE 
                            75                            967 
[1] "DEL PEAK  6(1Q44) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(1Q44) MUTATED DEL PEAK  6(1Q44) WILD-TYPE 
                         66                         976 
  DEL PEAK  6(1Q44) MUTATED DEL PEAK  6(1Q44) WILD-TYPE 
                         66                         976 
[1] "DEL PEAK  7(2Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(2Q22.1) MUTATED DEL PEAK  7(2Q22.1) WILD-TYPE 
                           63                           979 
  DEL PEAK  7(2Q22.1) MUTATED DEL PEAK  7(2Q22.1) WILD-TYPE 
                           63                           979 
[1] "DEL PEAK  8(2Q37.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(2Q37.1) MUTATED DEL PEAK  8(2Q37.1) WILD-TYPE 
                          113                           929 
  DEL PEAK  8(2Q37.1) MUTATED DEL PEAK  8(2Q37.1) WILD-TYPE 
                          113                           929 
[1] "DEL PEAK  9(3P21.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(3P21.31) MUTATED DEL PEAK  9(3P21.31) WILD-TYPE 
                           102                            940 
  DEL PEAK  9(3P21.31) MUTATED DEL PEAK  9(3P21.31) WILD-TYPE 
                           102                            940 
[1] "DEL PEAK 10(3Q13.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(3Q13.31) MUTATED DEL PEAK 10(3Q13.31) WILD-TYPE 
                            91                            951 
  DEL PEAK 10(3Q13.31) MUTATED DEL PEAK 10(3Q13.31) WILD-TYPE 
                            91                            951 
[1] "DEL PEAK 11(3Q29) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(3Q29) MUTATED DEL PEAK 11(3Q29) WILD-TYPE 
                         98                         944 
  DEL PEAK 11(3Q29) MUTATED DEL PEAK 11(3Q29) WILD-TYPE 
                         98                         944 
[1] "DEL PEAK 12(4Q34.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(4Q34.3) MUTATED DEL PEAK 12(4Q34.3) WILD-TYPE 
                          216                           826 
  DEL PEAK 12(4Q34.3) MUTATED DEL PEAK 12(4Q34.3) WILD-TYPE 
                          216                           826 
[1] "DEL PEAK 13(5P15.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(5P15.33) MUTATED DEL PEAK 13(5P15.33) WILD-TYPE 
                           101                            941 
  DEL PEAK 13(5P15.33) MUTATED DEL PEAK 13(5P15.33) WILD-TYPE 
                           101                            941 
[1] "DEL PEAK 14(5Q34) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(5Q34) MUTATED DEL PEAK 14(5Q34) WILD-TYPE 
                        127                         915 
  DEL PEAK 14(5Q34) MUTATED DEL PEAK 14(5Q34) WILD-TYPE 
                        127                         915 
[1] "DEL PEAK 15(6P25.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(6P25.3) MUTATED DEL PEAK 15(6P25.3) WILD-TYPE 
                          132                           910 
  DEL PEAK 15(6P25.3) MUTATED DEL PEAK 15(6P25.3) WILD-TYPE 
                          132                           910 
[1] "DEL PEAK 16(6Q22.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(6Q22.31) MUTATED DEL PEAK 16(6Q22.31) WILD-TYPE 
                           226                            816 
  DEL PEAK 16(6Q22.31) MUTATED DEL PEAK 16(6Q22.31) WILD-TYPE 
                           226                            816 
[1] "DEL PEAK 17(6Q26) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE 
                        248                         794 
  DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE 
                        248                         794 
[1] "DEL PEAK 18(8P23.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE 
                           86                           956 
  DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE 
                           86                           956 
[1] "DEL PEAK 19(8Q24.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 19(8Q24.3) MUTATED DEL PEAK 19(8Q24.3) WILD-TYPE 
                           75                           967 
  DEL PEAK 19(8Q24.3) MUTATED DEL PEAK 19(8Q24.3) WILD-TYPE 
                           75                           967 
[1] "DEL PEAK 20(9P21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 20(9P21.3) MUTATED DEL PEAK 20(9P21.3) WILD-TYPE 
                          574                           468 
  DEL PEAK 20(9P21.3) MUTATED DEL PEAK 20(9P21.3) WILD-TYPE 
                          574                           468 
[1] "DEL PEAK 21(10P15.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 21(10P15.3) MUTATED DEL PEAK 21(10P15.3) WILD-TYPE 
                           538                            504 
  DEL PEAK 21(10P15.3) MUTATED DEL PEAK 21(10P15.3) WILD-TYPE 
                           538                            504 
[1] "DEL PEAK 22(10P13) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 22(10P13) MUTATED DEL PEAK 22(10P13) WILD-TYPE 
                         538                          504 
  DEL PEAK 22(10P13) MUTATED DEL PEAK 22(10P13) WILD-TYPE 
                         538                          504 
[1] "DEL PEAK 23(10P11.23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 23(10P11.23) MUTATED DEL PEAK 23(10P11.23) WILD-TYPE 
                            542                             500 
  DEL PEAK 23(10P11.23) MUTATED DEL PEAK 23(10P11.23) WILD-TYPE 
                            542                             500 
[1] "DEL PEAK 24(10Q23.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 24(10Q23.31) MUTATED DEL PEAK 24(10Q23.31) WILD-TYPE 
                            609                             433 
  DEL PEAK 24(10Q23.31) MUTATED DEL PEAK 24(10Q23.31) WILD-TYPE 
                            609                             433 
[1] "DEL PEAK 25(10Q26.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 25(10Q26.3) MUTATED DEL PEAK 25(10Q26.3) WILD-TYPE 
                           642                            400 
  DEL PEAK 25(10Q26.3) MUTATED DEL PEAK 25(10Q26.3) WILD-TYPE 
                           642                            400 
[1] "DEL PEAK 26(11P15.5) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 26(11P15.5) MUTATED DEL PEAK 26(11P15.5) WILD-TYPE 
                           223                            819 
  DEL PEAK 26(11P15.5) MUTATED DEL PEAK 26(11P15.5) WILD-TYPE 
                           223                            819 
[1] "DEL PEAK 27(11P15.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 27(11P15.1) MUTATED DEL PEAK 27(11P15.1) WILD-TYPE 
                           170                            872 
  DEL PEAK 27(11P15.1) MUTATED DEL PEAK 27(11P15.1) WILD-TYPE 
                           170                            872 
[1] "DEL PEAK 28(11P11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 28(11P11.2) MUTATED DEL PEAK 28(11P11.2) WILD-TYPE 
                           154                            888 
  DEL PEAK 28(11P11.2) MUTATED DEL PEAK 28(11P11.2) WILD-TYPE 
                           154                            888 
[1] "DEL PEAK 29(12P13.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 29(12P13.1) MUTATED DEL PEAK 29(12P13.1) WILD-TYPE 
                           106                            936 
  DEL PEAK 29(12P13.1) MUTATED DEL PEAK 29(12P13.1) WILD-TYPE 
                           106                            936 
[1] "DEL PEAK 30(12Q12) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 30(12Q12) MUTATED DEL PEAK 30(12Q12) WILD-TYPE 
                         140                          902 
  DEL PEAK 30(12Q12) MUTATED DEL PEAK 30(12Q12) WILD-TYPE 
                         140                          902 
[1] "DEL PEAK 31(12Q15) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 31(12Q15) MUTATED DEL PEAK 31(12Q15) WILD-TYPE 
                         135                          907 
  DEL PEAK 31(12Q15) MUTATED DEL PEAK 31(12Q15) WILD-TYPE 
                         135                          907 
[1] "DEL PEAK 32(13Q14.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 32(13Q14.2) MUTATED DEL PEAK 32(13Q14.2) WILD-TYPE 
                           367                            675 
  DEL PEAK 32(13Q14.2) MUTATED DEL PEAK 32(13Q14.2) WILD-TYPE 
                           367                            675 
[1] "DEL PEAK 33(13Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 33(13Q22.1) MUTATED DEL PEAK 33(13Q22.1) WILD-TYPE 
                           351                            691 
  DEL PEAK 33(13Q22.1) MUTATED DEL PEAK 33(13Q22.1) WILD-TYPE 
                           351                            691 
[1] "DEL PEAK 34(14Q13.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 34(14Q13.1) MUTATED DEL PEAK 34(14Q13.1) WILD-TYPE 
                           232                            810 
  DEL PEAK 34(14Q13.1) MUTATED DEL PEAK 34(14Q13.1) WILD-TYPE 
                           232                            810 
[1] "DEL PEAK 35(14Q24.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 35(14Q24.2) MUTATED DEL PEAK 35(14Q24.2) WILD-TYPE 
                           277                            765 
  DEL PEAK 35(14Q24.2) MUTATED DEL PEAK 35(14Q24.2) WILD-TYPE 
                           277                            765 
[1] "DEL PEAK 36(14Q31.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 36(14Q31.3) MUTATED DEL PEAK 36(14Q31.3) WILD-TYPE 
                           261                            781 
  DEL PEAK 36(14Q31.3) MUTATED DEL PEAK 36(14Q31.3) WILD-TYPE 
                           261                            781 
[1] "DEL PEAK 37(15Q14) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 37(15Q14) MUTATED DEL PEAK 37(15Q14) WILD-TYPE 
                         204                          838 
  DEL PEAK 37(15Q14) MUTATED DEL PEAK 37(15Q14) WILD-TYPE 
                         204                          838 
[1] "DEL PEAK 38(16P12.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 38(16P12.2) MUTATED DEL PEAK 38(16P12.2) WILD-TYPE 
                           111                            931 
  DEL PEAK 38(16P12.2) MUTATED DEL PEAK 38(16P12.2) WILD-TYPE 
                           111                            931 
[1] "DEL PEAK 39(16Q23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 39(16Q23.1) MUTATED DEL PEAK 39(16Q23.1) WILD-TYPE 
                           123                            919 
  DEL PEAK 39(16Q23.1) MUTATED DEL PEAK 39(16Q23.1) WILD-TYPE 
                           123                            919 
[1] "DEL PEAK 40(17P13.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 40(17P13.1) MUTATED DEL PEAK 40(17P13.1) WILD-TYPE 
                           112                            930 
  DEL PEAK 40(17P13.1) MUTATED DEL PEAK 40(17P13.1) WILD-TYPE 
                           112                            930 
[1] "DEL PEAK 41(17Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 41(17Q11.2) MUTATED DEL PEAK 41(17Q11.2) WILD-TYPE 
                            90                            952 
  DEL PEAK 41(17Q11.2) MUTATED DEL PEAK 41(17Q11.2) WILD-TYPE 
                            90                            952 
[1] "DEL PEAK 42(18Q23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 42(18Q23) MUTATED DEL PEAK 42(18Q23) WILD-TYPE 
                         146                          896 
  DEL PEAK 42(18Q23) MUTATED DEL PEAK 42(18Q23) WILD-TYPE 
                         146                          896 
[1] "DEL PEAK 43(19Q13.41) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 43(19Q13.41) MUTATED DEL PEAK 43(19Q13.41) WILD-TYPE 
                            346                             696 
  DEL PEAK 43(19Q13.41) MUTATED DEL PEAK 43(19Q13.41) WILD-TYPE 
                            346                             696 
[1] "DEL PEAK 44(19Q13.43) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 44(19Q13.43) MUTATED DEL PEAK 44(19Q13.43) WILD-TYPE 
                            332                             710 
  DEL PEAK 44(19Q13.43) MUTATED DEL PEAK 44(19Q13.43) WILD-TYPE 
                            332                             710 
[1] "DEL PEAK 45(22Q13.32) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 45(22Q13.32) MUTATED DEL PEAK 45(22Q13.32) WILD-TYPE 
                            280                             762 
  DEL PEAK 45(22Q13.32) MUTATED DEL PEAK 45(22Q13.32) WILD-TYPE 
                            280                             762 
[1] "DEL PEAK 46(XP22.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 46(XP22.2) MUTATED DEL PEAK 46(XP22.2) WILD-TYPE 
                          214                           828 
  DEL PEAK 46(XP22.2) MUTATED DEL PEAK 46(XP22.2) WILD-TYPE 
                          214                           828 
[1] "DEL PEAK 47(XQ21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 47(XQ21.1) MUTATED DEL PEAK 47(XQ21.1) WILD-TYPE 
                          170                           872 
  DEL PEAK 47(XQ21.1) MUTATED DEL PEAK 47(XQ21.1) WILD-TYPE 
                          170                           872 
[1] "data2feature, selection=ALL"
 [1] "YEARS_TO_BIRTH"                        
 [2] "VITAL_STATUS"                          
 [3] "DAYS_TO_DEATH"                         
 [4] "DAYS_TO_LAST_FOLLOWUP"                 
 [5] "PRIMARY_SITE_OF_DISEASE"               
 [6] "DCC_UPLOAD_DATE"                       
 [7] "GENDER"                                
 [8] "DATE_OF_INITIAL_PATHOLOGIC_DIAGNOSIS"  
 [9] "DAYS_TO_LAST_KNOWN_ALIVE"              
[10] "RADIATION_THERAPY"                     
[11] "KARNOFSKY_PERFORMANCE_SCORE"           
[12] "HISTOLOGICAL_TYPE"                     
[13] "RADIATIONS_RADIATION_REGIMENINDICATION"
[14] "RACE"                                  
[15] "ETHNICITY"                             
[16] "BATCH_NUMBER"                          

Input Data has 16 rows and 1042 columns.

[1] "Batch" "16"   
[1] "Last Follow UP"
Variable 1:'YEARS_TO_BIRTH':	nDistinctValues=74,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'VITAL_STATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 3:'DAYS_TO_DEATH':	nDistinctValues=451,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
[1] "exclude grep('DAYS_?TO', vnms) to deal with survival parameters seperately"
Variable 4:'DAYS_TO_LAST_FOLLOWUP':	nDistinctValues=646,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
[1] "exclude grep('FOLLOWUP', vnms) to deal with survival parameters seperately"
Variable 5:'PRIMARY_SITE_OF_DISEASE':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'DCC_UPLOAD_DATE':	nDistinctValues=8,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "exclude grep('DATE', vnms) to deal with survival parameters seperately"
Variable 7:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'DATE_OF_INITIAL_PATHOLOGIC_DIAGNOSIS':	nDistinctValues=25,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
[1] "exclude grep('DATE', vnms) to deal with survival parameters seperately"
Variable 9:'DAYS_TO_LAST_KNOWN_ALIVE':	nDistinctValues=5,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
[1] "exclude grep('DAYS_?TO', vnms) to deal with survival parameters seperately"
Variable 10:'RADIATION_THERAPY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "RADIATION_THERAPY is excluded in the analysis because there is no more than two cases of (unique non-NA values)"
Variable 11:'KARNOFSKY_PERFORMANCE_SCORE':	nDistinctValues=8,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 12:'HISTOLOGICAL_TYPE':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 13:'RADIATIONS_RADIATION_REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 14:'RACE':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 15:'ETHNICITY':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 16:'BATCH_NUMBER':	nDistinctValues=43,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] NA
[1] "## **** detect survival parameters (defined in index such as ind_OS, ind_MFS, ind_RFS, ind_RFS, ind_BCR and ind_d2ssd) *** ##"
[1] "detected survival parameters using [ind_OS, overall_survival]"
[1] "survival parameters accumulated so far"
[1] "DAYS_TO_DEATH_OR_LAST_FUP" "VITAL_STATUS"             
[1] "detected survival parameters using [ind_OS, curated_overall_survival]"
[1] "survival parameters accumulated so far"
[1] "DAYS_TO_DEATH_OR_LAST_FUP" "VITAL_STATUS"             
[1] "detected survival parameters using [ind_TCGAOS]"
[1] "survival parameters accumulated so far"
[1] "DAYS_TO_DEATH_OR_LAST_FUP" "VITAL_STATUS"             
[1] "detected survivial parameters using [ind_MFS]"
[1] "survival parameters accumulated so far"
[1] "DAYS_TO_DEATH_OR_LAST_FUP" "VITAL_STATUS"             
[1] "detected survival parameters using [ind_RFS]"
[1] "survival parameters accumulated so far"
[1] "DAYS_TO_DEATH_OR_LAST_FUP" "VITAL_STATUS"             
[1] "detected survival parameters using [ind_BCR]"
[1] "survival parameters accumulated so far"
[1] "DAYS_TO_DEATH_OR_LAST_FUP" "VITAL_STATUS"             
[1] "detected survival parameters using [ind_Progression]"
[1] "survival parameters accumulated so far"
[1] "DAYS_TO_DEATH_OR_LAST_FUP" "VITAL_STATUS"             
[1] "detected survival parameters using [index_additional_survival_time]"
[1] "survival parameters accumulated so far"
[1] "DAYS_TO_DEATH_OR_LAST_FUP" "VITAL_STATUS"             
[1] "detected survival parameters using condition: [is.null(surv.mat)&&(selection=='SURV')]"
[1] "survival parameters accumulated so far"
[1] "DAYS_TO_DEATH_OR_LAST_FUP" "VITAL_STATUS"             
[1] "************ conversion from categorical data to rank data ********** "
[1] "****** SUMMARY ***** "
Output Data has 1042 columns, 1 survival variables, and 8 non-survival variables.
[1] "* survival variables: "
[1] "DAYS_TO_DEATH_OR_LAST_FUP" "VITAL_STATUS"             
[1] "* non-survival variables: "
[1] "YEARS_TO_BIRTH"                        
[2] "PRIMARY_SITE_OF_DISEASE"               
[3] "GENDER"                                
[4] "KARNOFSKY_PERFORMANCE_SCORE"           
[5] "HISTOLOGICAL_TYPE"                     
[6] "RADIATIONS_RADIATION_REGIMENINDICATION"
[7] "RACE"                                  
[8] "ETHNICITY"                             
YEARS_TO_BIRTH, nv=74, binary=FALSE, numeric=TRUE
PRIMARY_SITE_OF_DISEASE, nv=2, binary=FALSE, numeric=FALSE
GENDER, nv=2, binary=FALSE, numeric=FALSE
KARNOFSKY_PERFORMANCE_SCORE, nv=8, binary=FALSE, numeric=TRUE
HISTOLOGICAL_TYPE, nv=6, binary=FALSE, numeric=FALSE
RADIATIONS_RADIATION_REGIMENINDICATION, nv=2, binary=FALSE, numeric=FALSE
RACE, nv=4, binary=FALSE, numeric=FALSE
ETHNICITY, nv=2, binary=FALSE, numeric=FALSE

Clustering(1) Variable = AMP PEAK  1(1P36.21) MUTATION ANALYSIS
D1V1, survival
                                sevent
clus2                              0   1
  AMP PEAK  1(1P36.21) MUTATED    18  83
  AMP PEAK  1(1P36.21) WILD-TYPE 462 476
  AMP PEAK  1(1P36.21) MUTATED AMP PEAK  1(1P36.21) WILD-TYPE 
                           101                            938 
  AMP PEAK  1(1P36.21) MUTATED AMP PEAK  1(1P36.21) WILD-TYPE 
                            83                            476 
$`AMP PEAK  1(1P36.21) MUTATED`
TCGA-02-0001 TCGA-02-0025 TCGA-02-0052 TCGA-02-0055 TCGA-02-0106 TCGA-02-0113 
       11.77        42.74        12.59         2.50        11.67        92.65 
TCGA-02-0266 TCGA-02-0269 TCGA-02-0332 TCGA-02-0451 TCGA-02-0456 TCGA-06-0130 
       17.72        10.75        25.71        16.21         3.35        12.95 
TCGA-06-0133 TCGA-06-0152 TCGA-06-0173 TCGA-06-0177 TCGA-06-0182 TCGA-06-0187 
       14.30        12.33         4.47         4.18         3.65        27.22 
TCGA-06-0188 TCGA-06-0192 TCGA-06-0195 TCGA-06-0206 TCGA-06-0209 TCGA-06-0213 
       44.58        38.96         7.40         7.66         7.63         0.53 
TCGA-06-0216 TCGA-06-0237 TCGA-06-0410 TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 
       24.16        13.64         4.70        35.11        12.62         5.75 
TCGA-06-0649 TCGA-06-2557 TCGA-06-5856 TCGA-06-6698 TCGA-08-0349 TCGA-08-0350 
        2.10         1.08         3.75         4.77         9.80        29.23 
TCGA-08-0386 TCGA-08-0520 TCGA-08-0531 TCGA-12-0619 TCGA-12-0662 TCGA-12-0769 
       18.02        10.75         7.56        34.92        38.17        15.06 
TCGA-12-0776 TCGA-12-0820 TCGA-12-0826 TCGA-12-1090 TCGA-12-1098 TCGA-12-1099 
        9.73        18.48        27.78         7.59         3.98         4.14 
TCGA-12-1598 TCGA-12-3646 TCGA-12-3653 TCGA-12-5295 TCGA-14-0783 TCGA-14-0813 
       15.65        44.02        14.53        14.93         6.21         1.35 
TCGA-14-0817 TCGA-14-0867 TCGA-14-0871 TCGA-14-1034 TCGA-14-1452 TCGA-14-1454 
        5.39         2.04        28.93        15.95         7.10        30.18 
TCGA-14-1794 TCGA-14-1823 TCGA-14-1827 TCGA-14-2554 TCGA-14-3477 TCGA-15-1449 
        0.99        17.85         5.88        17.49         3.78        13.28 
TCGA-16-1056 TCGA-19-1386 TCGA-19-1388 TCGA-19-1390 TCGA-19-1787 TCGA-19-1791 
       14.01         9.07        12.95        25.38        12.66         0.13 
TCGA-19-4065 TCGA-26-1440 TCGA-26-5132 TCGA-26-5136 TCGA-28-1752 TCGA-28-2509 
        7.04         9.73         9.40        18.97         8.48         4.77 
TCGA-28-5207 TCGA-28-5216 TCGA-28-6450 TCGA-32-1970 TCGA-32-1987 TCGA-32-2616 
       11.28        13.64         5.42        15.39        14.86         7.36 
TCGA-32-2638 TCGA-32-4210 TCGA-32-5222 TCGA-41-2575 TCGA-41-6646 TCGA-74-6584 
       25.18         3.72        19.23         9.53        12.46         7.50 
TCGA-76-4934 TCGA-CS-4941 TCGA-CS-6665 TCGA-DU-7010 TCGA-DU-8165 TCGA-DU-A5TT 
        2.53         7.69        12.43        14.99        19.13         4.96 
TCGA-E1-5304 TCGA-HT-7686 TCGA-HT-A4DS TCGA-S9-A6WM TCGA-TM-A84I 
       41.13        42.74         0.23        19.86        28.08 

$`AMP PEAK  1(1P36.21) WILD-TYPE`
TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 TCGA-02-0011 
        4.73        18.35        23.18        10.59        35.41        20.71 
TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 
       82.59        20.61        87.06        77.65        20.12        53.10 
TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 
       24.59        12.16        90.58         2.83        14.14         3.62 
TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 
       10.72        10.52        18.31         6.87        14.73         3.22 
TCGA-02-0051 TCGA-02-0054 TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 
       15.09         6.54        19.86         8.35         9.57         6.02 
TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 
       19.73        26.43        28.70        25.05         5.49        10.19 
TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 
       20.84        27.25        89.72        22.72        12.62        51.32 
TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 
        8.81        57.76        16.96         3.48        27.02        65.00 
TCGA-02-0107 TCGA-02-0111 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 
       17.65        23.18        99.98        15.65        48.95        16.54 
TCGA-02-0260 TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 
       16.93        14.47         3.98        13.87        14.20        15.95 
TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 
       12.23         9.90         7.73        10.62         7.33        15.91 
TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 
        4.37        25.12        10.59        12.39        14.50        10.55 
TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 
       47.11        11.34         9.27        16.80        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 
       15.45        20.32         2.70         6.15        20.38        47.61 
TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 TCGA-06-0132 TCGA-06-0137 
        6.94         3.98        22.72        33.67        25.35        26.70 
TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 
       24.23        11.90         0.20        10.29         2.20        11.74 
TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 
        2.33        20.09        17.79        10.09         8.61        19.46 
TCGA-06-0151 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 
       46.59        13.94        10.45         3.19        10.82         9.44 
TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 
       11.80         3.42        56.91        10.65         5.85        19.66 
TCGA-06-0169 TCGA-06-0171 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0178 
        3.29        13.12         3.22         4.04        91.00        88.14 
TCGA-06-0179 TCGA-06-0184 TCGA-06-0185 TCGA-06-0189 TCGA-06-0190 TCGA-06-0194 
       20.25        69.90        73.84        15.42        10.42         4.67 
TCGA-06-0197 TCGA-06-0201 TCGA-06-0208 TCGA-06-0210 TCGA-06-0211 TCGA-06-0214 
        5.56         0.39         8.42         7.40        11.84        15.02 
TCGA-06-0219 TCGA-06-0221 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 
        0.72        19.82        13.32        20.42        48.69        10.82 
TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0412 TCGA-06-0413 TCGA-06-0646 
        9.01         0.26        72.36         9.57         3.16         5.75 
TCGA-06-0648 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 
        9.80        23.57        14.20        26.40        46.88         7.86 
TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 
        2.70         2.70         0.92        43.46        46.19         5.65 
TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 
        7.17        40.41        16.57        20.78        26.76        23.93 
TCGA-06-1086 TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 
        6.84         4.04        26.79        11.84        15.32        13.61 
TCGA-06-1805 TCGA-06-1806 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 
       33.90        15.32        12.49         4.93        17.65        12.56 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 
       30.64         5.95        16.64         5.98         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       31.50        11.74         3.55         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 TCGA-06-5858 TCGA-06-5859 
        8.98         8.55         6.71         2.73         6.15         4.57 
TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 
        5.23         7.79         5.39         1.48       120.56         7.36 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-06-A5U0 
        8.32        12.85         1.55         4.77         4.96         4.70 
TCGA-06-A5U1 TCGA-06-A6S0 TCGA-06-A6S1 TCGA-06-A7TK TCGA-06-A7TL TCGA-08-0244 
        1.87         3.12         2.56         5.39         5.42        22.68 
TCGA-08-0245 TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 
       37.84         4.18       115.86         1.74         8.42        25.71 
TCGA-08-0348 TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 
       12.16        65.33         1.28         8.42        17.95        24.56 
TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 
       31.10        37.58        22.29         3.39        12.23        14.93 
TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 
       15.35        13.97         0.72        12.56         4.27        42.15 
TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 TCGA-08-0521 TCGA-08-0524 
       11.08        19.59        58.68        19.33         4.80         7.27 
TCGA-08-0525 TCGA-08-0529 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0620 
       15.98        18.41        15.35        14.73        12.99        10.45 
TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 
        7.59        94.78         0.10        25.97        26.66        12.13 
TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 
        3.65        20.38        28.41        53.85        43.23         7.63 
TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0821 TCGA-12-0822 
       14.93        14.86        91.76        24.79        10.62        23.51 
TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1091 
       38.76         8.94        20.58       127.59         5.82        33.21 
TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 
       21.73        15.98        12.23        15.85         9.11        14.53 
TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 TCGA-12-3648 TCGA-12-3649 
       25.68        14.73         6.77        59.77        26.93        15.22 
TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 
       10.95        12.69        34.92         3.22         2.04        15.12 
TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 
       11.97         0.95        23.05         2.24        11.24        13.78 
TCGA-14-0812 TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 TCGA-14-1037 TCGA-14-1043 
        3.25         2.89        16.50        26.33        19.30         0.79 
TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 
        1.38         1.12         3.75        32.05        58.78        23.11 
TCGA-14-1453 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1795 
        1.15         0.92        40.96         6.67        12.43         1.97 
TCGA-14-1821 TCGA-14-1825 TCGA-14-1829 TCGA-14-2555 TCGA-14-4157 TCGA-15-0742 
       17.79         7.63         7.17         7.96         3.42        13.78 
TCGA-15-1444 TCGA-15-1446 TCGA-15-1447 TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 
       50.53        19.10        53.19         3.91        17.59        26.07 
TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1060 
       16.37         4.31        29.03         4.57        10.29         9.14 
TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 
       21.24        13.97         6.41        11.77        21.90         8.61 
TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 TCGA-19-1387 TCGA-19-1389 
        0.66        14.27         3.39        10.75         5.95         4.64 
TCGA-19-1392 TCGA-19-1786 TCGA-19-1789 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 
        3.65         7.17         3.25         9.67         4.87         1.08 
TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-5947 
        7.53         0.16         4.08        24.23         7.00         6.64 
TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 
       17.19         8.02        18.90         4.73        12.10         1.78 
TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-19-A60I TCGA-19-A6J4 
       22.49        14.07        16.80        14.96        17.79         3.98 
TCGA-19-A6J5 TCGA-26-1438 TCGA-26-1439 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 
       28.54        10.03        13.87        31.33         7.13         9.37 
TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 
       14.86         5.49         8.88         1.58         7.92         2.33 
TCGA-26-A7UX TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 
       19.33         5.06        16.60         9.86        24.23        40.54 
TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 
       21.30        30.05        14.04        11.51        24.76        10.39 
TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 
       10.39        16.08         7.59         2.86        14.40        15.78 
TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1753 
        0.20         2.53         9.21         8.35         7.63         1.22 
TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 TCGA-28-2513 
        1.55         2.83         0.13         0.66         6.74         7.30 
TCGA-28-2514 TCGA-28-5204 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 
        5.26        14.93        17.88        14.53        11.77        31.27 
TCGA-28-5214 TCGA-28-5215 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-32-1973 
       23.44        11.01         5.16        22.68        12.76        21.07 
TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 
        0.49         0.10        15.85        19.50         1.18         4.67 
TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 
       12.69        16.93        12.23        20.78        15.02        15.95 
TCGA-32-2632 TCGA-32-2634 TCGA-32-4208 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 
        8.84        22.78        21.14        12.59        19.86        10.85 
TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 
        0.85        13.35         8.94         0.99         4.44        11.84 
TCGA-41-4097 TCGA-41-5651 TCGA-4W-AA9S TCGA-4W-AA9T TCGA-74-6573 TCGA-74-6575 
        0.20        15.12         4.14        14.76         3.45        20.91 
TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 
        4.34        14.33         8.22         4.80         4.54         3.09 
TCGA-76-4929 TCGA-76-4931 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 
        3.65         9.17        10.78        16.70         3.29         2.70 
TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 
       11.38        17.06         8.35        20.98         4.83         5.03 
TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 
        0.23         9.27         7.73         7.79         1.61        17.72 
TCGA-87-5896 TCGA-OX-A56R TCGA-RR-A6KA TCGA-RR-A6KC TCGA-CS-4938 TCGA-CS-4942 
       26.30         5.92         6.28        20.55         4.70        43.89 
TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 
       18.15        10.62        64.64        40.18         0.10        21.01 
TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6666 
        9.96         6.38        17.69        23.84        17.95         8.48 
TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 
        7.56         8.02         7.40         6.61       122.73        81.96 
TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 
       75.25        47.93        72.92        50.86        50.17        44.52 
TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC 
       36.56        78.28        46.42        18.84        30.21        46.72 
TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L 
       39.78        37.45        33.57        72.95        31.63        24.20 
TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U 
       25.48        30.12         5.98        31.40        27.45        27.81 
TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M 
       29.23        14.40        18.51        12.10        11.24        17.88 
TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 
       30.74        16.18        19.96        31.82        30.31        14.40 
TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G 
        8.02        30.21        42.05        27.81        17.19        17.19 
TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 
       54.25        13.12        13.38         3.45        18.61        18.02 
TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 
       14.56        17.46         6.74        13.38         8.45         6.81 
TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 
      182.33        18.94        17.49        15.16       211.17        52.11 
TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 
       22.42        49.02        75.16        46.06        65.75         1.22 
TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 
       87.45         7.04        11.64       133.74        19.89        16.83 
TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 
       94.52       114.08         7.96         7.73        11.47        62.96 
TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7014 
      156.23       138.28       105.21         6.54         8.84       117.40 
TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 
       90.77        30.67        26.30        10.36         7.96        94.32 
TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 
       18.94        44.02        62.01        25.91        60.30        23.31 
TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 
       41.98         2.76         5.10        23.74        14.60        20.68 
TCGA-DU-8164 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR 
       21.40        16.96        15.48        14.17        14.24        12.59 
TCGA-DU-A5TS TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 
       15.12         3.65         5.65        12.20         8.65         2.70 
TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O 
       77.98         7.23         5.98        11.41        26.76         7.13 
TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC 
       21.30        17.98       124.50        77.88        42.31        23.51 
TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5305 
        7.50        44.42         0.56        50.14        67.46        79.99 
TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YO 
       57.93       134.27        78.21        95.57       130.78        75.02 
TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 
       32.45        36.82        32.35        14.33         0.23         0.20 
TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 
       47.77        25.48        34.36        36.82        18.77        14.93 
TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7638 
       24.99        23.97        18.44        15.35        17.88        22.55 
TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 
       20.61        20.09        12.95        13.68        14.24        16.01 
TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU 
       20.09        14.96        22.52        32.61        38.27        10.72 
TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L 
       18.38        18.71        23.70        14.76        17.82        16.41 
TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 
       15.02        16.44        22.26        28.54        10.78        36.66 
TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 
       48.69        20.45        13.58         5.72        27.52         0.10 
TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 
        6.67        11.54        40.11         0.13         0.03        16.54 
TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 
        3.75        17.42         6.54        24.26         6.38        40.34 
TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 
       75.19        95.93       106.95       172.77         4.01         5.03 
TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 
       29.85        23.18       122.47         4.57        17.29         3.16 
TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 
       22.06        45.99        56.09        57.60         0.23        14.27 
TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7687 
        0.16        16.24         0.76        44.68         6.05         0.10 
TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 
       31.69        14.96         0.10         0.10         2.96        17.52 
TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 
        6.90        14.53        39.48        19.23        39.09         0.23 
TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 
       50.63         0.49        23.61        37.15         0.33         0.13 
TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 
        3.68         5.33        35.47         3.72        11.28        31.43 
TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 
        1.64        16.24         9.40        63.55         0.10        37.87 
TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 
       33.01        12.23         6.25         0.10         0.46         2.50 
TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8563 
        5.56        13.78         0.23        29.59        34.19        28.27 
TCGA-HT-8564 TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA 
       15.72        26.04         0.13        20.22         0.07        27.35 
TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 
        0.10         5.33         2.70        16.93         1.81        16.14 
TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J 
       16.83        21.40        17.52        17.65         2.43        10.52 
TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 
       15.35        11.05         0.10        29.92        19.89         8.32 
TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7493 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 
       19.23        40.18        35.90         4.31        21.70        21.60 
TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM 
       19.59        17.82        20.35        12.76        20.81        20.71 
TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW 
       19.00        42.77        14.40        14.40         0.23         6.71 
TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 
        1.64         2.37         2.30         4.11         5.88         7.63 
TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z 
        0.76         1.28         0.16        10.42        13.25        11.64 
TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V 
        0.20         9.01        13.61        15.16         2.53        12.62 
TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW 
       15.85        14.04        19.33        14.83        14.53        13.61 
TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 
       12.23         2.20         9.17        10.29        14.53        16.34 
TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 
       16.73         1.91        16.50         5.03        11.08        12.99 
TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y 
       88.83        94.03        32.65        59.38        30.87         5.46 
TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS 
        9.90        28.08         2.07        19.59        30.67        62.17 
TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ 
       87.12        18.77        37.84        34.49        31.33        28.70 
TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 
       22.95        17.62        23.64        32.61        16.08        98.24 
TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG 
       95.93         5.85       106.39        69.50        72.59        80.12 
TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP 
       32.45        84.99        31.10        15.91        18.61        15.16 
TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ 
       14.07        36.13         7.92        22.32        23.51         7.13 
TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX 
       20.02         8.19         2.04        17.03        15.06        13.12 
TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 
       28.37        13.02       169.84        10.39        99.06        30.05 
TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 
       98.63        31.59        18.71        11.97        49.45        48.33 
TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F 
       49.32        34.78        48.39        24.92        16.18        59.05 
TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O 
       40.64        30.44        24.16        40.83        24.79        33.24 
TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RH TCGA-TQ-A7RW 
       25.38        18.61        14.93        23.80        15.98        26.99 
TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE 
       43.04        30.08        13.51         0.10         7.89        35.93 
TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 
       23.47        37.05        16.01        23.21         8.05        51.06 
TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C 
       13.32        43.96        39.88        43.40        45.80        46.88 
TCGA-WY-A85D TCGA-WY-A85E 
       37.71        20.81 

  AMP PEAK  1(1P36.21) MUTATED AMP PEAK  1(1P36.21) WILD-TYPE 
                          0.13                           0.03 
  AMP PEAK  1(1P36.21) MUTATED AMP PEAK  1(1P36.21) WILD-TYPE 
                         92.65                         211.17 
  AMP PEAK  1(1P36.21) MUTATED AMP PEAK  1(1P36.21) WILD-TYPE 
                         12.33                          15.02 
[1] "0.1 - 92.7 (12.3)"  "0.0 - 211.2 (15.0)"
[1] "hr=" "2.3"
D1V2, continuous
D1V3, binary
                                cls
clus                               0   1
  AMP PEAK  1(1P36.21) MUTATED    91  10
  AMP PEAK  1(1P36.21) WILD-TYPE 479 462
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  1(1P36.21) MUTATED     91   10
  AMP PEAK  1(1P36.21) WILD-TYPE  479  462
                        clus
vv                       AMP PEAK  1(1P36.21) MUTATED
  BRAIN                                            91
  CENTRAL NERVOUS SYSTEM                           10
                        clus
vv                       AMP PEAK  1(1P36.21) WILD-TYPE
  BRAIN                                             479
  CENTRAL NERVOUS SYSTEM                            462
[1] 2 2
[1] FALSE
D1V4, binary
                                cls
clus                               0   1
  AMP PEAK  1(1P36.21) MUTATED    45  56
  AMP PEAK  1(1P36.21) WILD-TYPE 385 556
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  1(1P36.21) MUTATED     45   56
  AMP PEAK  1(1P36.21) WILD-TYPE  385  556
        clus
vv       AMP PEAK  1(1P36.21) MUTATED AMP PEAK  1(1P36.21) WILD-TYPE
  FEMALE                           45                            385
  MALE                             56                            556
[1] 2 2
[1] FALSE
D1V5, continuous
                                vv
clus                             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  AMP PEAK  1(1P36.21) MUTATED             8                             0
  AMP PEAK  1(1P36.21) WILD-TYPE         168                            27
                                vv
clus                             OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  AMP PEAK  1(1P36.21) MUTATED                  0                 2
  AMP PEAK  1(1P36.21) WILD-TYPE              118               176
                                vv
clus                             TREATED PRIMARY GBM
  AMP PEAK  1(1P36.21) MUTATED                     1
  AMP PEAK  1(1P36.21) WILD-TYPE                  17
                                vv
clus                             UNTREATED PRIMARY (DE NOVO) GBM
  AMP PEAK  1(1P36.21) MUTATED                                90
  AMP PEAK  1(1P36.21) WILD-TYPE                             435
D1V6, multiclass
                                 clus
vv                                AMP PEAK  1(1P36.21) MUTATED
  ASTROCYTOMA                                                8
  GLIOBLASTOMA MULTIFORME (GBM)                              0
  OLIGOASTROCYTOMA                                           0
  OLIGODENDROGLIOMA                                          2
  TREATED PRIMARY GBM                                        1
  UNTREATED PRIMARY (DE NOVO) GBM                           90
                                 clus
vv                                AMP PEAK  1(1P36.21) WILD-TYPE
  ASTROCYTOMA                                                168
  GLIOBLASTOMA MULTIFORME (GBM)                               27
  OLIGOASTROCYTOMA                                           118
  OLIGODENDROGLIOMA                                          176
  TREATED PRIMARY GBM                                         17
  UNTREATED PRIMARY (DE NOVO) GBM                            435
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D1V7, binary
                                cls
clus                               0   1
  AMP PEAK  1(1P36.21) MUTATED    66  35
  AMP PEAK  1(1P36.21) WILD-TYPE 408 533
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  1(1P36.21) MUTATED     66   35
  AMP PEAK  1(1P36.21) WILD-TYPE  408  533
     clus
vv    AMP PEAK  1(1P36.21) MUTATED AMP PEAK  1(1P36.21) WILD-TYPE
  NO                            66                            408
  YES                           35                            533
[1] 2 2
[1] FALSE
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK  1(1P36.21) MUTATED                                  0     0
  AMP PEAK  1(1P36.21) WILD-TYPE                                1    21
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK  1(1P36.21) MUTATED                           4    92
  AMP PEAK  1(1P36.21) WILD-TYPE                        60   830
D1V8, multiclass
                                  clus
vv                                 AMP PEAK  1(1P36.21) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            0
  ASIAN                                                       0
  BLACK OR AFRICAN AMERICAN                                   4
  WHITE                                                      92
                                  clus
vv                                 AMP PEAK  1(1P36.21) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              1
  ASIAN                                                        21
  BLACK OR AFRICAN AMERICAN                                    60
  WHITE                                                       830
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D1V9, binary
                                cls
clus                               0   1
  AMP PEAK  1(1P36.21) MUTATED     3  79
  AMP PEAK  1(1P36.21) WILD-TYPE  27 812
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  1(1P36.21) MUTATED      3   79
  AMP PEAK  1(1P36.21) WILD-TYPE   27  812
                        clus
vv                       AMP PEAK  1(1P36.21) MUTATED
  HISPANIC OR LATINO                                3
  NOT HISPANIC OR LATINO                           79
                        clus
vv                       AMP PEAK  1(1P36.21) WILD-TYPE
  HISPANIC OR LATINO                                 27
  NOT HISPANIC OR LATINO                            812
[1] 2 2
[1] FALSE

Clustering(2) Variable = AMP PEAK  2(1Q22) MUTATION ANALYSIS
D2V1, survival
                             sevent
clus2                           0   1
  AMP PEAK  2(1Q22) MUTATED    48  92
  AMP PEAK  2(1Q22) WILD-TYPE 432 467
  AMP PEAK  2(1Q22) MUTATED AMP PEAK  2(1Q22) WILD-TYPE 
                        140                         899 
  AMP PEAK  2(1Q22) MUTATED AMP PEAK  2(1Q22) WILD-TYPE 
                         92                         467 
$`AMP PEAK  2(1Q22) MUTATED`
TCGA-02-0001 TCGA-02-0010 TCGA-02-0014 TCGA-02-0024 TCGA-02-0025 TCGA-02-0052 
       11.77        35.41        82.59        53.10        42.74        12.59 
TCGA-02-0055 TCGA-02-0069 TCGA-02-0099 TCGA-02-0104 TCGA-02-0106 TCGA-02-0113 
        2.50        28.70         3.48        65.00        11.67        92.65 
TCGA-02-0266 TCGA-02-0269 TCGA-02-0330 TCGA-02-0332 TCGA-02-0451 TCGA-02-0456 
       17.72        10.75        15.91        25.71        16.21         3.35 
TCGA-02-2483 TCGA-06-0128 TCGA-06-0130 TCGA-06-0133 TCGA-06-0152 TCGA-06-0166 
       15.32        22.72        12.95        14.30        12.33         5.85 
TCGA-06-0168 TCGA-06-0177 TCGA-06-0182 TCGA-06-0188 TCGA-06-0192 TCGA-06-0195 
       19.66         4.18         3.65        44.58        38.96         7.40 
TCGA-06-0206 TCGA-06-0209 TCGA-06-0216 TCGA-06-0237 TCGA-06-0409 TCGA-06-0410 
        7.66         7.63        24.16        13.64        72.36         4.70 
TCGA-06-0414 TCGA-06-0645 TCGA-06-1084 TCGA-06-1087 TCGA-06-2557 TCGA-06-2569 
       35.11         5.75        23.93         4.04         1.08         0.43 
TCGA-06-5856 TCGA-06-6698 TCGA-06-A5U0 TCGA-08-0349 TCGA-08-0350 TCGA-08-0386 
        3.75         4.77         4.70         9.80        29.23        18.02 
TCGA-08-0524 TCGA-08-0531 TCGA-12-0615 TCGA-12-0619 TCGA-12-0662 TCGA-12-0773 
        7.27         7.56        15.35        34.92        38.17        43.23 
TCGA-12-0826 TCGA-12-0827 TCGA-12-1090 TCGA-12-1098 TCGA-12-1099 TCGA-12-1598 
       27.78        38.76         7.59         3.98         4.14        15.65 
TCGA-12-3646 TCGA-12-3653 TCGA-14-0783 TCGA-14-0813 TCGA-14-0817 TCGA-14-0867 
       44.02        14.53         6.21         1.35         5.39         2.04 
TCGA-14-0871 TCGA-14-1452 TCGA-14-1454 TCGA-14-1794 TCGA-14-1823 TCGA-14-3477 
       28.93         7.10        30.18         0.99        17.85         3.78 
TCGA-15-1447 TCGA-15-1449 TCGA-16-0849 TCGA-19-0962 TCGA-19-1388 TCGA-19-1786 
       53.19        13.28        26.07         0.66        12.95         7.17 
TCGA-19-1791 TCGA-19-2619 TCGA-19-2625 TCGA-19-4065 TCGA-26-1440 TCGA-26-5132 
        0.13         9.67         4.08         7.04         9.73         9.40 
TCGA-26-5133 TCGA-26-5139 TCGA-26-6173 TCGA-28-1752 TCGA-28-2509 TCGA-28-5207 
       14.86         1.58         7.92         8.48         4.77        11.28 
TCGA-28-5216 TCGA-28-5218 TCGA-32-1970 TCGA-32-1987 TCGA-32-2632 TCGA-32-2634 
       13.64         5.16        15.39        14.86         8.84        22.78 
TCGA-32-4210 TCGA-32-5222 TCGA-41-5651 TCGA-74-6584 TCGA-76-4934 TCGA-CS-4941 
        3.72        19.23        15.12         7.50         2.53         7.69 
TCGA-CS-6665 TCGA-DB-A64L TCGA-DH-A669 TCGA-DU-6392 TCGA-DU-6396 TCGA-DU-6400 
       12.43        24.20        30.21       211.17        75.16         1.22 
TCGA-DU-6403 TCGA-DU-7010 TCGA-DU-7015 TCGA-DU-7290 TCGA-DU-7304 TCGA-DU-8162 
       11.64        14.99        90.77        10.36        23.31        14.60 
TCGA-DU-8165 TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A6S7 TCGA-DU-A7TB TCGA-E1-5302 
       19.13        15.12         4.96         7.23        42.31        50.14 
TCGA-E1-5304 TCGA-E1-5319 TCGA-FG-5962 TCGA-FG-8185 TCGA-HT-7475 TCGA-HT-7477 
       41.13        95.57        47.77        14.24        17.42        24.26 
TCGA-HT-7677 TCGA-HT-7688 TCGA-HT-8108 TCGA-HT-A4DS TCGA-HT-A5R7 TCGA-HW-A5KM 
       16.24        31.69         2.50         0.23        20.22        20.71 
TCGA-QH-A6CV TCGA-S9-A6WM TCGA-S9-A7R1 TCGA-TM-A84B TCGA-TM-A84I TCGA-TM-A84J 
       14.53        19.86       169.84        24.92        28.08        24.16 
TCGA-VM-A8CA TCGA-WH-A86K 
       13.51        13.32 

$`AMP PEAK  2(1Q22) WILD-TYPE`
TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0011 TCGA-02-0015 
        4.73        18.35        23.18        10.59        20.71        20.61 
TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 
       87.06        77.65        20.12        24.59        12.16        90.58 
TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 
        2.83        14.14         3.62        10.72        10.52        18.31 
TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 TCGA-02-0051 TCGA-02-0054 TCGA-02-0057 
        6.87        14.73         3.22        15.09         6.54        19.86 
TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0070 
        8.35         9.57         6.02        19.73        26.43        25.05 
TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 
        5.49        10.19        20.84        27.25        89.72        22.72 
TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0102 
       12.62        51.32         8.81        57.76        16.96        27.02 
TCGA-02-0107 TCGA-02-0111 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 
       17.65        23.18        99.98        15.65        48.95        16.54 
TCGA-02-0260 TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 
       16.93        14.47         3.98        13.87        14.20        15.95 
TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0333 
       12.23         9.90         7.73        10.62         7.33         4.37 
TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 
       25.12        10.59        12.39        14.50        10.55        47.11 
TCGA-02-0440 TCGA-02-0446 TCGA-02-2466 TCGA-02-2470 TCGA-02-2485 TCGA-02-2486 
       11.34         9.27        16.80        12.92        15.45        20.32 
TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 
        2.70         6.15        20.38        47.61         6.94         3.98 
TCGA-06-0129 TCGA-06-0132 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 
       33.67        25.35        26.70        24.23        11.90         0.20 
TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 
       10.29         2.20        11.74         2.33        20.09        17.79 
TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0154 TCGA-06-0155 
       10.09         8.61        19.46        46.59        13.94        10.45 
TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 
        3.19        10.82         9.44        11.80         3.42        56.91 
TCGA-06-0165 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 
       10.65         3.29        13.12         4.47         3.22         4.04 
TCGA-06-0176 TCGA-06-0178 TCGA-06-0179 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 
       91.00        88.14        20.25        69.90        73.84        27.22 
TCGA-06-0189 TCGA-06-0190 TCGA-06-0194 TCGA-06-0197 TCGA-06-0201 TCGA-06-0208 
       15.42        10.42         4.67         5.56         0.39         8.42 
TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0219 TCGA-06-0221 
        7.40        11.84         0.53        15.02         0.72        19.82 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 
       13.32        20.42        48.69        10.82         9.01         0.26 
TCGA-06-0412 TCGA-06-0413 TCGA-06-0644 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 
        9.57         3.16        12.62         5.75         9.80         2.10 
TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 
       23.57        14.20        26.40        46.88         7.86         2.70 
TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 
        2.70         0.92        43.46        46.19         5.65         7.17 
TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1086 TCGA-06-1800 
       40.41        16.57        20.78        26.76         6.84        26.79 
TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-1806 TCGA-06-2558 
       11.84        15.32        13.61        33.90        15.32        12.49 
TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 
        4.93        17.65        12.56        30.64         5.95        16.64 
TCGA-06-2566 TCGA-06-2567 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 
        5.98         4.37        31.50        11.74         3.55         8.35 
TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 
        4.54         8.81         8.98         8.55         6.71         2.73 
TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 
        6.15         4.57         5.23         7.79         5.39         1.48 
TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6699 TCGA-06-6700 
      120.56         7.36         8.32        12.85         1.55         4.77 
TCGA-06-6701 TCGA-06-A5U1 TCGA-06-A6S0 TCGA-06-A6S1 TCGA-06-A7TK TCGA-06-A7TL 
        4.96         1.87         3.12         2.56         5.39         5.42 
TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 
       22.68        37.84         4.18       115.86         1.74         8.42 
TCGA-08-0347 TCGA-08-0348 TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 
       25.71        12.16        65.33         1.28         8.42        17.95 
TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 
       24.56        31.10        37.58        22.29         3.39        12.23 
TCGA-08-0380 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 
       14.93        15.35        13.97         0.72        12.56         4.27 
TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 
       42.15        11.08        19.59        58.68        19.33        10.75 
TCGA-08-0521 TCGA-08-0525 TCGA-08-0529 TCGA-12-0616 TCGA-12-0618 TCGA-12-0620 
        4.80        15.98        18.41        14.73        12.99        10.45 
TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 
        7.59        94.78         0.10        25.97        26.66        12.13 
TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0775 
        3.65        20.38        28.41        15.06        53.85         7.63 
TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 
        9.73        14.93        14.86        91.76        24.79        18.48 
TCGA-12-0821 TCGA-12-0822 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 
       10.62        23.51         8.94        20.58       127.59         5.82 
TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 
       33.21        21.73        15.98        12.23        15.85         9.11 
TCGA-12-1097 TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 TCGA-12-3648 
       14.53        25.68        14.73         6.77        59.77        26.93 
TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-5295 TCGA-12-5299 
       15.22        10.95        12.69        34.92        14.93         3.22 
TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 
        2.04        15.12        11.97         0.95        23.05         2.24 
TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 
       11.24        13.78         3.25         2.89        16.50        26.33 
TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 
       15.95        19.30         0.79         1.38         1.12         3.75 
TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1453 TCGA-14-1455 TCGA-14-1456 
       32.05        58.78        23.11         1.15         0.92        40.96 
TCGA-14-1458 TCGA-14-1459 TCGA-14-1795 TCGA-14-1821 TCGA-14-1825 TCGA-14-1827 
        6.67        12.43         1.97        17.79         7.63         5.88 
TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 
        7.17        17.49         7.96         3.42        13.78        50.53 
TCGA-15-1446 TCGA-16-0846 TCGA-16-0848 TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 
       19.10         3.91        17.59        16.37         4.31        29.03 
TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 
        4.57        10.29        14.01         9.14        21.24        13.97 
TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 TCGA-19-0963 TCGA-19-0964 
        6.41        11.77        21.90         8.61        14.27         3.39 
TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1389 TCGA-19-1390 TCGA-19-1392 
       10.75         9.07         5.95         4.64        25.38         3.65 
TCGA-19-1787 TCGA-19-1789 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 
       12.66         3.25         4.87         1.08         7.53         0.16 
TCGA-19-2629 TCGA-19-2631 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 
       24.23         7.00         6.64        17.19         8.02        18.90 
TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 
        4.73        12.10         1.78        22.49        14.07        16.80 
TCGA-19-5960 TCGA-19-A60I TCGA-19-A6J4 TCGA-19-A6J5 TCGA-26-1438 TCGA-26-1439 
       14.96        17.79         3.98        28.54        10.03        13.87 
TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 
       31.33         7.13         9.37         5.49         8.88        18.97 
TCGA-26-6174 TCGA-26-A7UX TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 
        2.33        19.33         5.06        16.60         9.86        24.23 
TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 
       40.54        21.30        30.05        14.04        11.51        24.76 
TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 
       10.39        10.39        16.08         7.59         2.86        14.40 
TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 
       15.78         0.20         2.53         9.21         8.35         7.63 
TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 
        1.22         1.55         2.83         0.13         0.66         6.74 
TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 
        7.30         5.26        14.93        17.88        14.53        11.77 
TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 
       31.27        23.44        11.01        22.68        12.76         5.42 
TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 
       21.07         0.49         0.10        15.85        19.50         1.18 
TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 
        4.67        12.69        16.93        12.23        20.78        15.02 
TCGA-32-2615 TCGA-32-2616 TCGA-32-2638 TCGA-32-4208 TCGA-32-4211 TCGA-32-4213 
       15.95         7.36        25.18        21.14        12.59        19.86 
TCGA-32-4719 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 
       10.85         0.85        13.35         8.94         9.53         0.99 
TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-6646 TCGA-4W-AA9S TCGA-4W-AA9T 
        4.44        11.84         0.20        12.46         4.14        14.76 
TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-76-4925 
        3.45        20.91         4.34        14.33         8.22         4.80 
TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4935 TCGA-76-6191 
        4.54         3.09         3.65         9.17        10.78        16.70 
TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 
        3.29         2.70        11.38        17.06         8.35        20.98 
TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 
        4.83         5.03         0.23         9.27         7.73         7.79 
TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 TCGA-OX-A56R TCGA-RR-A6KA TCGA-RR-A6KC 
        1.61        17.72        26.30         5.92         6.28        20.55 
TCGA-CS-4938 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 
        4.70        43.89        18.15        10.62        64.64        40.18 
TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 
        0.10        21.01         9.96         6.38        17.69        23.84 
TCGA-CS-6290 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 
       17.95         8.48         7.56         8.02         7.40         6.61 
TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 
      122.73        81.96        75.25        47.93        72.92        50.86 
TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA 
       50.17        44.52        36.56        78.28        46.42        18.84 
TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG 
       30.21        46.72        39.78        37.45        33.57        72.95 
TCGA-DB-A4XH TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S 
       31.63        25.48        30.12         5.98        31.40        27.45 
TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L 
       27.81        29.23        14.40        18.51        12.10        11.24 
TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 
       17.88        30.74        16.18        19.96        31.82        30.31 
TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G 
       14.40         8.02        42.05        27.81        17.19        17.19 
TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 
       54.25        13.12        13.38         3.45        18.61        18.02 
TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 
       14.56        17.46         6.74        13.38         8.45         6.81 
TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 
      182.33        18.94        17.49        15.16        52.11        22.42 
TCGA-DU-6395 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6404 
       49.02        46.06        65.75        87.45         7.04       133.74 
TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 
       19.89        16.83        94.52       114.08         7.96         7.73 
TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7011 TCGA-DU-7012 
       11.47        62.96       156.23       138.28       105.21         6.54 
TCGA-DU-7013 TCGA-DU-7014 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7292 TCGA-DU-7294 
        8.84       117.40        30.67        26.30         7.96        94.32 
TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7306 
       18.94        44.02        62.01        25.91        60.30        41.98 
TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8166 
        2.76         5.10        23.74        20.68        21.40        16.96 
TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TU TCGA-DU-A5TW 
       15.48        14.17        14.24        12.59         3.65         5.65 
TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S8 TCGA-DU-A76K 
       12.20         8.65         2.70        77.98         5.98        11.41 
TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA 
       26.76         7.13        21.30        17.98       124.50        77.88 
TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5303 TCGA-E1-5305 
       23.51         7.50        44.42         0.56        67.46        79.99 
TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5322 TCGA-E1-A7YO TCGA-E1-A7YV 
       57.93       134.27        78.21       130.78        75.02        32.45 
TCGA-E1-A7YW TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5963 
       36.82        32.35        14.33         0.23         0.20        25.48 
TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 
       34.36        36.82        18.77        14.93        24.99        23.97 
TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 
       18.44        15.35        17.88        22.55        20.61        20.09 
TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 
       12.95        13.68        16.01        20.09        14.96        22.52 
TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY 
       32.61        38.27        10.72        18.38        18.71        23.70 
TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 
       14.76        17.82        16.41        15.02        16.44        22.26 
TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N 
       28.54        10.78        36.66        48.69        20.45        13.58 
TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 
        5.72        27.52         0.10         6.67        11.54        40.11 
TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7476 TCGA-HT-7478 
        0.13         0.03        16.54         3.75         6.54         6.38 
TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 
       40.34        75.19        95.93       106.95       172.77         4.01 
TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 
        5.03        29.85        23.18       122.47         4.57        17.29 
TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 
        3.16        22.06        45.99        56.09        57.60         0.23 
TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 
       14.27         0.16         0.76        44.68         6.05        42.74 
TCGA-HT-7687 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 
        0.10        14.96         0.10         0.10         2.96        17.52 
TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 
        6.90        14.53        39.48        19.23        39.09         0.23 
TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 
       50.63         0.49        23.61        37.15         0.33         0.13 
TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 
        3.68         5.33        35.47         3.72        11.28        31.43 
TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 
        1.64        16.24         9.40        63.55         0.10        37.87 
TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8109 
       33.01        12.23         6.25         0.10         0.46         5.56 
TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8563 TCGA-HT-8564 
       13.78         0.23        29.59        34.19        28.27        15.72 
TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC 
       26.04         0.13         0.07        27.35         0.10         5.33 
TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 
        2.70        16.93         1.81        16.14        16.83        21.40 
TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L 
       17.52        17.65         2.43        10.52        15.35        11.05 
TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 
        0.10        29.92        19.89         8.32        19.23        40.18 
TCGA-HW-7493 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 
       35.90         4.31        21.70        21.60        19.59        17.82 
TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X 
       20.35        12.76        20.81        19.00        42.77        14.40 
TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ 
       14.40         0.23         6.71         1.64         2.37         2.30 
TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U 
        4.11         5.88         7.63         0.76         1.28         0.16 
TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 
       10.42        13.25        11.64         0.20         9.01        13.61 
TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS 
       15.16         2.53        12.62        15.85        14.04        19.33 
TCGA-QH-A6CU TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 
       14.83        13.61        12.23         2.20         9.17        10.29 
TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC 
       14.53        16.34        16.73         1.91        16.50         5.03 
TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M 
       11.08        12.99        88.83        94.03        32.65        59.38 
TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 
       30.87         5.46         9.90        28.08         2.07        19.59 
TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX 
       30.67        62.17        87.12        18.77        37.84        34.49 
TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 
       31.33        28.70        22.95        17.62        23.64        32.61 
TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD 
       16.08        98.24        95.93         5.85       106.39        69.50 
TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WN 
       72.59        80.12        32.45        84.99        31.10        15.91 
TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX 
       18.61        15.16        14.07        36.13         7.92        22.32 
TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 
       23.51         7.13        20.02         8.19         2.04        17.03 
TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R2 TCGA-S9-A7R3 
       15.06        13.12        28.37        13.02        10.39        99.06 
TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 
       30.05        98.63        31.59        18.71        11.97        49.45 
TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84C TCGA-TM-A84F 
       48.33        49.32        34.78        48.39        16.18        59.05 
TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q 
       40.64        30.44        40.83        24.79        33.24        25.38 
TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RH TCGA-TQ-A7RW TCGA-VM-A8C8 
       18.61        14.93        23.80        15.98        26.99        43.04 
TCGA-VM-A8C9 TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CH TCGA-VV-A829 
       30.08         0.10         7.89        35.93        23.47        37.05 
TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WY-A858 TCGA-WY-A859 
       16.01        23.21         8.05        51.06        43.96        39.88 
TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       43.40        45.80        46.88        37.71        20.81 

  AMP PEAK  2(1Q22) MUTATED AMP PEAK  2(1Q22) WILD-TYPE 
                       0.13                        0.03 
  AMP PEAK  2(1Q22) MUTATED AMP PEAK  2(1Q22) WILD-TYPE 
                     211.17                      182.33 
  AMP PEAK  2(1Q22) MUTATED AMP PEAK  2(1Q22) WILD-TYPE 
                      14.27                       14.93 
[1] "0.1 - 211.2 (14.3)" "0.0 - 182.3 (14.9)"
[1] "hr=" "1.3"
D2V2, continuous
D2V3, binary
                             cls
clus                            0   1
  AMP PEAK  2(1Q22) MUTATED   101  39
  AMP PEAK  2(1Q22) WILD-TYPE 469 433
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  2(1Q22) MUTATED    101   39
  AMP PEAK  2(1Q22) WILD-TYPE  469  433
                        clus
vv                       AMP PEAK  2(1Q22) MUTATED AMP PEAK  2(1Q22) WILD-TYPE
  BRAIN                                        101                         469
  CENTRAL NERVOUS SYSTEM                        39                         433
[1] 2 2
[1] FALSE
D2V4, binary
                             cls
clus                            0   1
  AMP PEAK  2(1Q22) MUTATED    63  77
  AMP PEAK  2(1Q22) WILD-TYPE 367 535
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  2(1Q22) MUTATED     63   77
  AMP PEAK  2(1Q22) WILD-TYPE  367  535
        clus
vv       AMP PEAK  2(1Q22) MUTATED AMP PEAK  2(1Q22) WILD-TYPE
  FEMALE                        63                         367
  MALE                          77                         535
[1] 2 2
[1] FALSE
D2V5, continuous
                             vv
clus                          ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  AMP PEAK  2(1Q22) MUTATED            17                             1
  AMP PEAK  2(1Q22) WILD-TYPE         159                            26
                             vv
clus                          OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  AMP PEAK  2(1Q22) MUTATED                  6                16
  AMP PEAK  2(1Q22) WILD-TYPE              112               162
                             vv
clus                          TREATED PRIMARY GBM
  AMP PEAK  2(1Q22) MUTATED                     3
  AMP PEAK  2(1Q22) WILD-TYPE                  15
                             vv
clus                          UNTREATED PRIMARY (DE NOVO) GBM
  AMP PEAK  2(1Q22) MUTATED                                97
  AMP PEAK  2(1Q22) WILD-TYPE                             428
D2V6, multiclass
                                 clus
vv                                AMP PEAK  2(1Q22) MUTATED
  ASTROCYTOMA                                            17
  GLIOBLASTOMA MULTIFORME (GBM)                           1
  OLIGOASTROCYTOMA                                        6
  OLIGODENDROGLIOMA                                      16
  TREATED PRIMARY GBM                                     3
  UNTREATED PRIMARY (DE NOVO) GBM                        97
                                 clus
vv                                AMP PEAK  2(1Q22) WILD-TYPE
  ASTROCYTOMA                                             159
  GLIOBLASTOMA MULTIFORME (GBM)                            26
  OLIGOASTROCYTOMA                                        112
  OLIGODENDROGLIOMA                                       162
  TREATED PRIMARY GBM                                      15
  UNTREATED PRIMARY (DE NOVO) GBM                         428
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D2V7, binary
                             cls
clus                            0   1
  AMP PEAK  2(1Q22) MUTATED    84  56
  AMP PEAK  2(1Q22) WILD-TYPE 390 512
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  2(1Q22) MUTATED     84   56
  AMP PEAK  2(1Q22) WILD-TYPE  390  512
     clus
vv    AMP PEAK  2(1Q22) MUTATED AMP PEAK  2(1Q22) WILD-TYPE
  NO                         84                         390
  YES                        56                         512
[1] 2 2
[1] FALSE
                             vv
clus                          AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK  2(1Q22) MUTATED                                  0     5
  AMP PEAK  2(1Q22) WILD-TYPE                                1    16
                             vv
clus                          BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK  2(1Q22) MUTATED                          10   120
  AMP PEAK  2(1Q22) WILD-TYPE                        54   802
D2V8, multiclass
                                  clus
vv                                 AMP PEAK  2(1Q22) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                         0
  ASIAN                                                    5
  BLACK OR AFRICAN AMERICAN                               10
  WHITE                                                  120
                                  clus
vv                                 AMP PEAK  2(1Q22) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                           1
  ASIAN                                                     16
  BLACK OR AFRICAN AMERICAN                                 54
  WHITE                                                    802
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D2V9, binary
                             cls
clus                            0   1
  AMP PEAK  2(1Q22) MUTATED     2 119
  AMP PEAK  2(1Q22) WILD-TYPE  28 772
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  2(1Q22) MUTATED      2  119
  AMP PEAK  2(1Q22) WILD-TYPE   28  772
                        clus
vv                       AMP PEAK  2(1Q22) MUTATED AMP PEAK  2(1Q22) WILD-TYPE
  HISPANIC OR LATINO                             2                          28
  NOT HISPANIC OR LATINO                       119                         772
[1] 2 2
[1] FALSE

Clustering(3) Variable = AMP PEAK  3(1Q32.1) MUTATION ANALYSIS
D3V1, survival
                               sevent
clus2                             0   1
  AMP PEAK  3(1Q32.1) MUTATED    52 146
  AMP PEAK  3(1Q32.1) WILD-TYPE 428 413
  AMP PEAK  3(1Q32.1) MUTATED AMP PEAK  3(1Q32.1) WILD-TYPE 
                          198                           841 
  AMP PEAK  3(1Q32.1) MUTATED AMP PEAK  3(1Q32.1) WILD-TYPE 
                          146                           413 
$`AMP PEAK  3(1Q32.1) MUTATED`
TCGA-02-0001 TCGA-02-0007 TCGA-02-0014 TCGA-02-0024 TCGA-02-0028 TCGA-02-0052 
       11.77        23.18        82.59        53.10        90.58        12.59 
TCGA-02-0055 TCGA-02-0071 TCGA-02-0104 TCGA-02-0106 TCGA-02-0113 TCGA-02-0266 
        2.50         5.49        65.00        11.67        92.65        17.72 
TCGA-02-0269 TCGA-02-0330 TCGA-02-0333 TCGA-02-0422 TCGA-02-0430 TCGA-02-0451 
       10.75        15.91         4.37        14.50        10.55        16.21 
TCGA-02-0456 TCGA-02-2470 TCGA-02-2483 TCGA-06-0128 TCGA-06-0130 TCGA-06-0133 
        3.35        12.92        15.32        22.72        12.95        14.30 
TCGA-06-0143 TCGA-06-0145 TCGA-06-0149 TCGA-06-0152 TCGA-06-0154 TCGA-06-0157 
       11.74         2.33         8.61        12.33        13.94         3.19 
TCGA-06-0162 TCGA-06-0166 TCGA-06-0168 TCGA-06-0177 TCGA-06-0182 TCGA-06-0185 
        3.42         5.85        19.66         4.18         3.65        73.84 
TCGA-06-0188 TCGA-06-0192 TCGA-06-0195 TCGA-06-0206 TCGA-06-0209 TCGA-06-0210 
       44.58        38.96         7.40         7.66         7.63         7.40 
TCGA-06-0216 TCGA-06-0237 TCGA-06-0240 TCGA-06-0409 TCGA-06-0410 TCGA-06-0412 
       24.16        13.64        20.42        72.36         4.70         9.57 
TCGA-06-0414 TCGA-06-0645 TCGA-06-0750 TCGA-06-1084 TCGA-06-1087 TCGA-06-1804 
       35.11         5.75         0.92        23.93         4.04        13.61 
TCGA-06-1806 TCGA-06-2557 TCGA-06-2569 TCGA-06-5411 TCGA-06-5856 TCGA-06-6698 
       15.32         1.08         0.43         8.35         3.75         4.77 
TCGA-06-6699 TCGA-06-A5U0 TCGA-06-A6S0 TCGA-08-0244 TCGA-08-0349 TCGA-08-0350 
        1.55         4.70         3.12        22.68         9.80        29.23 
TCGA-08-0353 TCGA-08-0357 TCGA-08-0386 TCGA-08-0514 TCGA-08-0524 TCGA-08-0531 
        8.42        37.58        18.02        11.08         7.27         7.56 
TCGA-12-0615 TCGA-12-0619 TCGA-12-0670 TCGA-12-0692 TCGA-12-0769 TCGA-12-0773 
       15.35        34.92        25.97         3.65        15.06        43.23 
TCGA-12-0775 TCGA-12-0821 TCGA-12-0826 TCGA-12-0827 TCGA-12-0829 TCGA-12-1090 
        7.63        10.62        27.78        38.76        20.58         7.59 
TCGA-12-1092 TCGA-12-1096 TCGA-12-1098 TCGA-12-1099 TCGA-12-1598 TCGA-12-3649 
       21.73         9.11         3.98         4.14        15.65        15.22 
TCGA-12-3653 TCGA-14-0783 TCGA-14-0787 TCGA-14-0813 TCGA-14-0817 TCGA-14-0865 
       14.53         6.21         2.24         1.35         5.39        16.50 
TCGA-14-0867 TCGA-14-0871 TCGA-14-1037 TCGA-14-1401 TCGA-14-1452 TCGA-14-1454 
        2.04        28.93        19.30         3.75         7.10        30.18 
TCGA-14-1459 TCGA-14-1794 TCGA-14-1823 TCGA-14-3477 TCGA-15-0742 TCGA-15-1446 
       12.43         0.99        17.85         3.78        13.78        19.10 
TCGA-15-1449 TCGA-16-0846 TCGA-16-0848 TCGA-16-0861 TCGA-19-0962 TCGA-19-0963 
       13.28         3.91        17.59         4.31         0.66        14.27 
TCGA-19-1387 TCGA-19-1786 TCGA-19-1791 TCGA-19-2619 TCGA-19-2621 TCGA-19-2625 
        5.95         7.17         0.13         9.67         1.08         4.08 
TCGA-19-4065 TCGA-19-5952 TCGA-19-5954 TCGA-19-A6J4 TCGA-26-1440 TCGA-26-6173 
        7.04        18.90        12.10         3.98         9.73         7.92 
TCGA-27-1834 TCGA-27-2518 TCGA-27-2524 TCGA-27-2528 TCGA-28-1750 TCGA-28-1752 
       40.54        24.76         7.59        15.78         8.35         8.48 
TCGA-28-2509 TCGA-28-5207 TCGA-28-5216 TCGA-28-5218 TCGA-28-5220 TCGA-32-1970 
        4.77        11.28        13.64         5.16        12.76        15.39 
TCGA-32-1979 TCGA-32-1987 TCGA-32-1991 TCGA-32-2632 TCGA-32-2634 TCGA-32-4210 
       19.50        14.86        16.93         8.84        22.78         3.72 
TCGA-32-4213 TCGA-32-5222 TCGA-41-2573 TCGA-41-3392 TCGA-41-5651 TCGA-41-6646 
       19.86        19.23         8.94         0.99        15.12        12.46 
TCGA-4W-AA9S TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 TCGA-76-4934 TCGA-76-4935 
        4.14         4.34        14.33         7.50         2.53        10.78 
TCGA-76-6662 TCGA-CS-4941 TCGA-CS-5395 TCGA-CS-5397 TCGA-CS-6665 TCGA-DB-5277 
        9.27         7.69        21.01         6.38        12.43        50.86 
TCGA-DB-A64L TCGA-DH-A669 TCGA-DU-6392 TCGA-DU-6400 TCGA-DU-6403 TCGA-DU-7010 
       24.20        30.21       211.17         1.22        11.64        14.99 
TCGA-DU-7015 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7304 TCGA-DU-8162 TCGA-DU-8165 
       90.77        10.36         7.96        23.31        14.60        19.13 
TCGA-DU-A5TT TCGA-DU-A7TB TCGA-DU-A7TD TCGA-FG-5962 TCGA-FG-6688 TCGA-FG-6692 
        4.96        42.31         7.50        47.77        18.77        18.44 
TCGA-FG-A4MW TCGA-HT-7475 TCGA-HT-7603 TCGA-HT-7688 TCGA-HT-8011 TCGA-HT-8104 
       18.38        17.42        23.18        31.69        16.24        12.23 
TCGA-HT-A4DS TCGA-HT-A5R7 TCGA-QH-A6CV TCGA-QH-A6CX TCGA-S9-A6WM TCGA-S9-A7R1 
        0.23        20.22        14.53        12.23        19.86       169.84 
TCGA-S9-A7R2 TCGA-TM-A7C3 TCGA-TM-A84B TCGA-TM-A84I TCGA-VM-A8CA TCGA-WH-A86K 
       10.39        49.45        24.92        28.08        13.51        13.32 

$`AMP PEAK  3(1Q32.1) WILD-TYPE`
TCGA-02-0003 TCGA-02-0006 TCGA-02-0009 TCGA-02-0010 TCGA-02-0011 TCGA-02-0015 
        4.73        18.35        10.59        35.41        20.71        20.61 
TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 
       87.06        77.65        20.12        42.74        24.59        12.16 
TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 
        2.83        14.14         3.62        10.72        10.52        18.31 
TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 TCGA-02-0051 TCGA-02-0054 TCGA-02-0057 
        6.87        14.73         3.22        15.09         6.54        19.86 
TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 
        8.35         9.57         6.02        19.73        26.43        28.70 
TCGA-02-0070 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 
       25.05        10.19        20.84        27.25        89.72        22.72 
TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 
       12.62        51.32         8.81        57.76        16.96         3.48 
TCGA-02-0102 TCGA-02-0107 TCGA-02-0111 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 
       27.02        17.65        23.18        99.98        15.65        48.95 
TCGA-02-0258 TCGA-02-0260 TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 
       16.54        16.93        14.47         3.98        13.87        14.20 
TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 
       15.95        12.23         9.90         7.73        10.62         7.33 
TCGA-02-0332 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0432 TCGA-02-0440 
       25.71        25.12        10.59        12.39        47.11        11.34 
TCGA-02-0446 TCGA-02-2466 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 
        9.27        16.80        15.45        20.32         2.70         6.15 
TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0129 TCGA-06-0132 
       20.38        47.61         6.94         3.98        33.67        25.35 
TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 
       26.70        24.23        11.90         0.20        10.29         2.20 
TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0150 TCGA-06-0151 TCGA-06-0155 
       20.09        17.79        10.09        19.46        46.59        10.45 
TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0164 TCGA-06-0165 TCGA-06-0169 
       10.82         9.44        11.80        56.91        10.65         3.29 
TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0178 
       13.12         4.47         3.22         4.04        91.00        88.14 
TCGA-06-0179 TCGA-06-0184 TCGA-06-0187 TCGA-06-0189 TCGA-06-0190 TCGA-06-0194 
       20.25        69.90        27.22        15.42        10.42         4.67 
TCGA-06-0197 TCGA-06-0201 TCGA-06-0208 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 
        5.56         0.39         8.42        11.84         0.53        15.02 
TCGA-06-0219 TCGA-06-0221 TCGA-06-0238 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 
        0.72        19.82        13.32        48.69        10.82         9.01 
TCGA-06-0402 TCGA-06-0413 TCGA-06-0644 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 
        0.26         3.16        12.62         5.75         9.80         2.10 
TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 
       23.57        14.20        26.40        46.88         7.86         2.70 
TCGA-06-0749 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 
        2.70        43.46        46.19         5.65         7.17        40.41 
TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1086 TCGA-06-1800 TCGA-06-1801 
       16.57        20.78        26.76         6.84        26.79        11.84 
TCGA-06-1802 TCGA-06-1805 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 
       15.32        33.90        12.49         4.93        17.65        12.56 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2570 
       30.64         5.95        16.64         5.98         4.37        31.50 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 
       11.74         3.55         4.54         8.81         8.98         8.55 
TCGA-06-5416 TCGA-06-5418 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 
        6.71         2.73         6.15         4.57         5.23         7.79 
TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 
        5.39         1.48       120.56         7.36         8.32        12.85 
TCGA-06-6700 TCGA-06-6701 TCGA-06-A5U1 TCGA-06-A6S1 TCGA-06-A7TK TCGA-06-A7TL 
        4.77         4.96         1.87         2.56         5.39         5.42 
TCGA-08-0245 TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 
       37.84         4.18       115.86         1.74         8.42        25.71 
TCGA-08-0348 TCGA-08-0351 TCGA-08-0352 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 
       12.16        65.33         1.28        17.95        24.56        31.10 
TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0389 TCGA-08-0390 
       22.29         3.39        12.23        14.93        15.35        13.97 
TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 TCGA-08-0516 TCGA-08-0517 
        0.72        12.56         4.27        42.15        19.59        58.68 
TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0525 TCGA-08-0529 TCGA-12-0616 
       19.33        10.75         4.80        15.98        18.41        14.73 
TCGA-12-0618 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 
       12.99        10.45         7.59        94.78         0.10        38.17 
TCGA-12-0688 TCGA-12-0691 TCGA-12-0703 TCGA-12-0707 TCGA-12-0772 TCGA-12-0776 
       26.66        12.13        20.38        28.41        53.85         9.73 
TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0822 
       14.93        14.86        91.76        24.79        18.48        23.51 
TCGA-12-0828 TCGA-12-1088 TCGA-12-1089 TCGA-12-1091 TCGA-12-1093 TCGA-12-1094 
        8.94       127.59         5.82        33.21        15.98        12.23 
TCGA-12-1095 TCGA-12-1097 TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 
       15.85        14.53        25.68        14.73         6.77        59.77 
TCGA-12-3646 TCGA-12-3648 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-5295 
       44.02        26.93        10.95        12.69        34.92        14.93 
TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 
        3.22         2.04        15.12        11.97         0.95        23.05 
TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 TCGA-14-0862 TCGA-14-0866 TCGA-14-1034 
       11.24        13.78         3.25         2.89        26.33        15.95 
TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 
        0.79         1.38         1.12        32.05        58.78        23.11 
TCGA-14-1453 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1795 TCGA-14-1821 
        1.15         0.92        40.96         6.67         1.97        17.79 
TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-4157 
        7.63         5.88         7.17        17.49         7.96         3.42 
TCGA-15-1444 TCGA-15-1447 TCGA-16-0849 TCGA-16-0850 TCGA-16-1045 TCGA-16-1047 
       50.53        53.19        26.07        16.37        29.03         4.57 
TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 
       10.29        14.01         9.14        21.24        13.97         6.41 
TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 
       11.77        21.90         8.61         3.39        10.75         9.07 
TCGA-19-1388 TCGA-19-1389 TCGA-19-1390 TCGA-19-1392 TCGA-19-1787 TCGA-19-1789 
       12.95         4.64        25.38         3.65        12.66         3.25 
TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 TCGA-19-2629 TCGA-19-2631 TCGA-19-5947 
        4.87         7.53         0.16        24.23         7.00         6.64 
TCGA-19-5950 TCGA-19-5951 TCGA-19-5953 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 
       17.19         8.02         4.73         1.78        22.49        14.07 
TCGA-19-5959 TCGA-19-5960 TCGA-19-A60I TCGA-19-A6J5 TCGA-26-1438 TCGA-26-1439 
       16.80        14.96        17.79        28.54        10.03        13.87 
TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 
       31.33         7.13         9.37         9.40        14.86         5.49 
TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6174 TCGA-26-A7UX TCGA-27-1830 
        8.88        18.97         1.58         2.33        19.33         5.06 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 
       16.60         9.86        24.23        21.30        30.05        14.04 
TCGA-27-1838 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2526 TCGA-27-2527 
       11.51        10.39        10.39        16.08         2.86        14.40 
TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1751 TCGA-28-1753 TCGA-28-1755 
        0.20         2.53         9.21         7.63         1.22         1.55 
TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 TCGA-28-2513 TCGA-28-2514 
        2.83         0.13         0.66         6.74         7.30         5.26 
TCGA-28-5204 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 
       14.93        17.88        14.53        11.77        31.27        23.44 
TCGA-28-5215 TCGA-28-5219 TCGA-28-6450 TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 
       11.01        22.68         5.42        21.07         0.49         0.10 
TCGA-32-1978 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-2491 TCGA-32-2494 
       15.85         1.18         4.67        12.69        12.23        20.78 
TCGA-32-2495 TCGA-32-2615 TCGA-32-2616 TCGA-32-2638 TCGA-32-4208 TCGA-32-4211 
       15.02        15.95         7.36        25.18        21.14        12.59 
TCGA-32-4719 TCGA-41-2571 TCGA-41-2572 TCGA-41-2575 TCGA-41-3393 TCGA-41-3915 
       10.85         0.85        13.35         9.53         4.44        11.84 
TCGA-41-4097 TCGA-4W-AA9T TCGA-74-6573 TCGA-74-6575 TCGA-74-6581 TCGA-76-4925 
        0.20        14.76         3.45        20.91         8.22         4.80 
TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-6191 TCGA-76-6192 
        4.54         3.09         3.65         9.17        16.70         3.29 
TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 
        2.70        11.38        17.06         8.35        20.98         4.83 
TCGA-76-6657 TCGA-76-6661 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 
        5.03         0.23         7.73         7.79         1.61        17.72 
TCGA-87-5896 TCGA-OX-A56R TCGA-RR-A6KA TCGA-RR-A6KC TCGA-CS-4938 TCGA-CS-4942 
       26.30         5.92         6.28        20.55         4.70        43.89 
TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5396 
       18.15        10.62        64.64        40.18         0.10         9.96 
TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 
       17.69        23.84        17.95         8.48         7.56         8.02 
TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 
        7.40         6.61       122.73        81.96        75.25        47.93 
TCGA-DB-5276 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 
       72.92        50.17        44.52        36.56        78.28        46.42 
TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF 
       18.84        30.21        46.72        39.78        37.45        33.57 
TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R 
       72.95        31.63        25.48        30.12         5.98        31.40 
TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K 
       27.45        27.81        29.23        14.40        18.51        12.10 
TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 
       11.24        17.88        30.74        16.18        19.96        31.82 
TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F 
       30.31        14.40         8.02        42.05        27.81        17.19 
TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV 
       17.19        54.25        13.12        13.38         3.45        18.61 
TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 
       18.02        14.56        17.46         6.74        13.38         8.45 
TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6393 
        6.81       182.33        18.94        17.49        15.16        52.11 
TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6401 
       22.42        49.02        75.16        46.06        65.75        87.45 
TCGA-DU-6402 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 
        7.04       133.74        19.89        16.83        94.52       114.08 
TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 
        7.96         7.73        11.47        62.96       156.23       138.28 
TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7014 TCGA-DU-7018 TCGA-DU-7019 
      105.21         6.54         8.84       117.40        30.67        26.30 
TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 
       94.32        18.94        44.02        62.01        25.91        60.30 
TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8163 TCGA-DU-8164 
       41.98         2.76         5.10        23.74        20.68        21.40 
TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS 
       16.96        15.48        14.17        14.24        12.59        15.12 
TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 
        3.65         5.65        12.20         8.65         2.70        77.98 
TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R 
        7.23         5.98        11.41        26.76         7.13        21.30 
TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TC TCGA-DU-A7TG TCGA-DU-A7TJ 
       17.98       124.50        77.88        23.51        44.42         0.56 
TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 
       50.14        67.46        41.13        79.99        57.93       134.27 
TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YO TCGA-E1-A7YV TCGA-E1-A7YW 
       78.21        95.57       130.78        75.02        32.45        36.82 
TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5963 TCGA-FG-5964 
       32.35        14.33         0.23         0.20        25.48        34.36 
TCGA-FG-5965 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-7634 TCGA-FG-7636 
       36.82        14.93        24.99        23.97        15.35        17.88 
TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 
       22.55        20.61        20.09        12.95        13.68        14.24 
TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT 
       16.01        20.09        14.96        22.52        32.61        38.27 
TCGA-FG-A4MU TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L 
       10.72        18.71        23.70        14.76        17.82        16.41 
TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 
       15.02        16.44        22.26        28.54        10.78        36.66 
TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 
       48.69        20.45        13.58         5.72        27.52         0.10 
TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 
        6.67        11.54        40.11         0.13         0.03        16.54 
TCGA-HT-7474 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 
        3.75         6.54        24.26         6.38        40.34        75.19 
TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 
       95.93       106.95       172.77         4.01         5.03        29.85 
TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 
      122.47         4.57        17.29         3.16        22.06        45.99 
TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 
       56.09        57.60         0.23        14.27         0.16        16.24 
TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7689 
        0.76        44.68         6.05        42.74         0.10        14.96 
TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 
        0.10         0.10         2.96        17.52         6.90        14.53 
TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 
       39.48        19.23        39.09         0.23        50.63         0.49 
TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 
       23.61        37.15         0.33         0.13         3.68         5.33 
TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8012 
       35.47         3.72        11.28        31.43         1.64         9.40 
TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8105 TCGA-HT-8106 
       63.55         0.10        37.87        33.01         6.25         0.10 
TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 
        0.46         2.50         5.56        13.78         0.23        29.59 
TCGA-HT-8114 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R9 
       34.19        28.27        15.72        26.04         0.13         0.07 
TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 
       27.35         0.10         5.33         2.70        16.93         1.81 
TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H 
       16.14        16.83        21.40        17.52        17.65         2.43 
TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 
       10.52        15.35        11.05         0.10        29.92        19.89 
TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7493 TCGA-HW-7495 TCGA-HW-8319 
        8.32        19.23        40.18        35.90         4.31        21.70 
TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL 
       21.60        19.59        17.82        20.35        12.76        20.81 
TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV 
       20.71        19.00        42.77        14.40        14.40         0.23 
TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 
        6.71         1.64         2.37         2.30         4.11         5.88 
TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X 
        7.63         0.76         1.28         0.16        10.42        13.25 
TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-QH-A65R TCGA-QH-A65S 
       11.64         0.20         9.01        13.61        15.16         2.53 
TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CW 
       12.62        15.85        14.04        19.33        14.83        13.61 
TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 
        2.20         9.17        10.29        14.53        16.34        16.73 
TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK 
        1.91        16.50         5.03        11.08        12.99        88.83 
TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z 
       94.03        32.65        59.38        30.87         5.46         9.90 
TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU 
       28.08         2.07        19.59        30.67        62.17        87.12 
TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 
       18.77        37.84        34.49        31.33        28.70        22.95 
TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 
       17.62        23.64        32.61        16.08        98.24        95.93 
TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH 
        5.85       106.39        69.50        72.59        80.12        32.45 
TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ 
       84.99        31.10        15.91        18.61        15.16        14.07 
TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 
       36.13         7.92        22.32        23.51         7.13        20.02 
TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY 
        8.19         2.04        17.03        15.06        13.12        28.37 
TCGA-S9-A7QZ TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V 
       13.02        99.06        30.05        98.63        31.59        18.71 
TCGA-S9-A89Z TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84C 
       11.97        48.33        49.32        34.78        48.39        16.18 
TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M 
       59.05        40.64        30.44        24.16        40.83        24.79 
TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RH 
       33.24        25.38        18.61        14.93        23.80        15.98 
TCGA-TQ-A7RW TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE 
       26.99        43.04        30.08         0.10         7.89        35.93 
TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 
       23.47        37.05        16.01        23.21         8.05        51.06 
TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D 
       43.96        39.88        43.40        45.80        46.88        37.71 
TCGA-WY-A85E 
       20.81 

  AMP PEAK  3(1Q32.1) MUTATED AMP PEAK  3(1Q32.1) WILD-TYPE 
                         0.13                          0.03 
  AMP PEAK  3(1Q32.1) MUTATED AMP PEAK  3(1Q32.1) WILD-TYPE 
                       211.17                        182.33 
  AMP PEAK  3(1Q32.1) MUTATED AMP PEAK  3(1Q32.1) WILD-TYPE 
                       12.445                        15.160 
[1] "0.1 - 211.2 (12.4)" "0.0 - 182.3 (15.2)"
[1] "hr=" "1.9"
D3V2, continuous
D3V3, binary
                               cls
clus                              0   1
  AMP PEAK  3(1Q32.1) MUTATED   158  41
  AMP PEAK  3(1Q32.1) WILD-TYPE 412 431
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  3(1Q32.1) MUTATED    158   41
  AMP PEAK  3(1Q32.1) WILD-TYPE  412  431
                        clus
vv                       AMP PEAK  3(1Q32.1) MUTATED
  BRAIN                                          158
  CENTRAL NERVOUS SYSTEM                          41
                        clus
vv                       AMP PEAK  3(1Q32.1) WILD-TYPE
  BRAIN                                            412
  CENTRAL NERVOUS SYSTEM                           431
[1] 2 2
[1] FALSE
D3V4, binary
                               cls
clus                              0   1
  AMP PEAK  3(1Q32.1) MUTATED    79 120
  AMP PEAK  3(1Q32.1) WILD-TYPE 351 492
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  3(1Q32.1) MUTATED     79  120
  AMP PEAK  3(1Q32.1) WILD-TYPE  351  492
        clus
vv       AMP PEAK  3(1Q32.1) MUTATED AMP PEAK  3(1Q32.1) WILD-TYPE
  FEMALE                          79                           351
  MALE                           120                           492
[1] 2 2
[1] FALSE
D3V5, continuous
                               vv
clus                            ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  AMP PEAK  3(1Q32.1) MUTATED            20                             7
  AMP PEAK  3(1Q32.1) WILD-TYPE         156                            20
                               vv
clus                            OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  AMP PEAK  3(1Q32.1) MUTATED                  7                14
  AMP PEAK  3(1Q32.1) WILD-TYPE              111               164
                               vv
clus                            TREATED PRIMARY GBM
  AMP PEAK  3(1Q32.1) MUTATED                     5
  AMP PEAK  3(1Q32.1) WILD-TYPE                  13
                               vv
clus                            UNTREATED PRIMARY (DE NOVO) GBM
  AMP PEAK  3(1Q32.1) MUTATED                               146
  AMP PEAK  3(1Q32.1) WILD-TYPE                             379
D3V6, multiclass
                                 clus
vv                                AMP PEAK  3(1Q32.1) MUTATED
  ASTROCYTOMA                                              20
  GLIOBLASTOMA MULTIFORME (GBM)                             7
  OLIGOASTROCYTOMA                                          7
  OLIGODENDROGLIOMA                                        14
  TREATED PRIMARY GBM                                       5
  UNTREATED PRIMARY (DE NOVO) GBM                         146
                                 clus
vv                                AMP PEAK  3(1Q32.1) WILD-TYPE
  ASTROCYTOMA                                               156
  GLIOBLASTOMA MULTIFORME (GBM)                              20
  OLIGOASTROCYTOMA                                          111
  OLIGODENDROGLIOMA                                         164
  TREATED PRIMARY GBM                                        13
  UNTREATED PRIMARY (DE NOVO) GBM                           379
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D3V7, binary
                               cls
clus                              0   1
  AMP PEAK  3(1Q32.1) MUTATED   119  80
  AMP PEAK  3(1Q32.1) WILD-TYPE 355 488
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  3(1Q32.1) MUTATED    119   80
  AMP PEAK  3(1Q32.1) WILD-TYPE  355  488
     clus
vv    AMP PEAK  3(1Q32.1) MUTATED AMP PEAK  3(1Q32.1) WILD-TYPE
  NO                          119                           355
  YES                          80                           488
[1] 2 2
[1] FALSE
                               vv
clus                            AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK  3(1Q32.1) MUTATED                                  0     5
  AMP PEAK  3(1Q32.1) WILD-TYPE                                1    16
                               vv
clus                            BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK  3(1Q32.1) MUTATED                          17   170
  AMP PEAK  3(1Q32.1) WILD-TYPE                        47   752
D3V8, multiclass
                                  clus
vv                                 AMP PEAK  3(1Q32.1) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                           0
  ASIAN                                                      5
  BLACK OR AFRICAN AMERICAN                                 17
  WHITE                                                    170
                                  clus
vv                                 AMP PEAK  3(1Q32.1) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                             1
  ASIAN                                                       16
  BLACK OR AFRICAN AMERICAN                                   47
  WHITE                                                      752
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D3V9, binary
                               cls
clus                              0   1
  AMP PEAK  3(1Q32.1) MUTATED     2 169
  AMP PEAK  3(1Q32.1) WILD-TYPE  28 722
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  3(1Q32.1) MUTATED      2  169
  AMP PEAK  3(1Q32.1) WILD-TYPE   28  722
                        clus
vv                       AMP PEAK  3(1Q32.1) MUTATED
  HISPANIC OR LATINO                               2
  NOT HISPANIC OR LATINO                         169
                        clus
vv                       AMP PEAK  3(1Q32.1) WILD-TYPE
  HISPANIC OR LATINO                                28
  NOT HISPANIC OR LATINO                           722
[1] 2 2
[1] FALSE

Clustering(4) Variable = AMP PEAK  4(1Q44) MUTATION ANALYSIS
D4V1, survival
                             sevent
clus2                           0   1
  AMP PEAK  4(1Q44) MUTATED    34  90
  AMP PEAK  4(1Q44) WILD-TYPE 446 469
  AMP PEAK  4(1Q44) MUTATED AMP PEAK  4(1Q44) WILD-TYPE 
                        124                         915 
  AMP PEAK  4(1Q44) MUTATED AMP PEAK  4(1Q44) WILD-TYPE 
                         90                         469 
$`AMP PEAK  4(1Q44) MUTATED`
TCGA-02-0001 TCGA-02-0024 TCGA-02-0028 TCGA-02-0052 TCGA-02-0055 TCGA-02-0104 
       11.77        53.10        90.58        12.59         2.50        65.00 
TCGA-02-0106 TCGA-02-0113 TCGA-02-0266 TCGA-02-0269 TCGA-02-0290 TCGA-02-0330 
       11.67        92.65        17.72        10.75        15.95        15.91 
TCGA-02-0451 TCGA-02-0456 TCGA-02-2483 TCGA-02-2485 TCGA-06-0133 TCGA-06-0152 
       16.21         3.35        15.32        15.45        14.30        12.33 
TCGA-06-0162 TCGA-06-0166 TCGA-06-0168 TCGA-06-0173 TCGA-06-0177 TCGA-06-0182 
        3.42         5.85        19.66         4.47         4.18         3.65 
TCGA-06-0188 TCGA-06-0192 TCGA-06-0195 TCGA-06-0206 TCGA-06-0209 TCGA-06-0216 
       44.58        38.96         7.40         7.66         7.63        24.16 
TCGA-06-0237 TCGA-06-0409 TCGA-06-0410 TCGA-06-0414 TCGA-06-0645 TCGA-06-1084 
       13.64        72.36         4.70        35.11         5.75        23.93 
TCGA-06-1087 TCGA-06-1801 TCGA-06-2557 TCGA-06-2561 TCGA-06-2569 TCGA-06-5856 
        4.04        11.84         1.08        17.65         0.43         3.75 
TCGA-06-6698 TCGA-06-A5U0 TCGA-08-0349 TCGA-08-0350 TCGA-08-0354 TCGA-08-0380 
        4.77         4.70         9.80        29.23        17.95        14.93 
TCGA-08-0386 TCGA-08-0524 TCGA-08-0529 TCGA-08-0531 TCGA-12-0619 TCGA-12-0657 
       18.02         7.27        18.41         7.56        34.92         0.10 
TCGA-12-0773 TCGA-12-0826 TCGA-12-0827 TCGA-12-1090 TCGA-12-1098 TCGA-12-1099 
       43.23        27.78        38.76         7.59         3.98         4.14 
TCGA-12-1598 TCGA-12-3653 TCGA-14-0783 TCGA-14-0813 TCGA-14-0817 TCGA-14-0865 
       15.65        14.53         6.21         1.35         5.39        16.50 
TCGA-14-0867 TCGA-14-0871 TCGA-14-1452 TCGA-14-1454 TCGA-14-1794 TCGA-14-1823 
        2.04        28.93         7.10        30.18         0.99        17.85 
TCGA-14-3477 TCGA-15-0742 TCGA-15-1449 TCGA-19-0962 TCGA-19-1786 TCGA-19-1791 
        3.78        13.78        13.28         0.66         7.17         0.13 
TCGA-19-2625 TCGA-19-4065 TCGA-26-1440 TCGA-26-6173 TCGA-27-2524 TCGA-28-2509 
        4.08         7.04         9.73         7.92         7.59         4.77 
TCGA-28-5214 TCGA-28-5216 TCGA-28-5218 TCGA-32-1970 TCGA-32-1987 TCGA-32-2632 
       23.44        13.64         5.16        15.39        14.86         8.84 
TCGA-32-2634 TCGA-32-4210 TCGA-32-4719 TCGA-32-5222 TCGA-41-5651 TCGA-74-6578 
       22.78         3.72        10.85        19.23        15.12        14.33 
TCGA-74-6584 TCGA-76-4934 TCGA-CS-4941 TCGA-CS-6665 TCGA-DB-5277 TCGA-DB-A64L 
        7.50         2.53         7.69        12.43        50.86        24.20 
TCGA-DH-A669 TCGA-DU-6392 TCGA-DU-6400 TCGA-DU-7010 TCGA-DU-7290 TCGA-DU-7304 
       30.21       211.17         1.22        14.99        10.36        23.31 
TCGA-DU-8162 TCGA-DU-8165 TCGA-DU-A5TT TCGA-DU-A7TB TCGA-E1-5304 TCGA-FG-5962 
       14.60        19.13         4.96        42.31        41.13        47.77 
TCGA-HT-7475 TCGA-HT-7688 TCGA-HT-A4DS TCGA-HT-A5R7 TCGA-KT-A7W1 TCGA-QH-A6CV 
       17.42        31.69         0.23        20.22        14.40        14.53 
TCGA-S9-A6WM TCGA-S9-A89Z TCGA-VM-A8CA TCGA-WH-A86K 
       19.86        11.97        13.51        13.32 

$`AMP PEAK  4(1Q44) WILD-TYPE`
TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 TCGA-02-0011 
        4.73        18.35        23.18        10.59        35.41        20.71 
TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0025 
       82.59        20.61        87.06        77.65        20.12        42.74 
TCGA-02-0026 TCGA-02-0027 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 
       24.59        12.16         2.83        14.14         3.62        10.72 
TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 TCGA-02-0051 
       10.52        18.31         6.87        14.73         3.22        15.09 
TCGA-02-0054 TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 
        6.54        19.86         8.35         9.57         6.02        19.73 
TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 
       26.43        28.70        25.05         5.49        10.19        20.84 
TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 
       27.25        89.72        22.72        12.62        51.32         8.81 
TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0107 TCGA-02-0111 
       57.76        16.96         3.48        27.02        17.65        23.18 
TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0271 
       99.98        15.65        48.95        16.54        16.93        14.47 
TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 
        3.98        13.87        14.20        12.23         9.90         7.73 
TCGA-02-0325 TCGA-02-0326 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 
       10.62         7.33        25.71         4.37        25.12        10.59 
TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 
       12.39        14.50        10.55        47.11        11.34         9.27 
TCGA-02-2466 TCGA-02-2470 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 
       16.80        12.92        20.32         2.70         6.15        20.38 
TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 
       47.61         6.94         3.98        22.72        33.67        12.95 
TCGA-06-0132 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 
       25.35        26.70        24.23        11.90         0.20        10.29 
TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 
        2.20        11.74         2.33        20.09        17.79        10.09 
TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 
        8.61        19.46        46.59        13.94        10.45         3.19 
TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0164 TCGA-06-0165 TCGA-06-0169 
       10.82         9.44        11.80        56.91        10.65         3.29 
TCGA-06-0171 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0178 TCGA-06-0179 
       13.12         3.22         4.04        91.00        88.14        20.25 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0189 TCGA-06-0190 TCGA-06-0194 
       69.90        73.84        27.22        15.42        10.42         4.67 
TCGA-06-0197 TCGA-06-0201 TCGA-06-0208 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 
        5.56         0.39         8.42         7.40        11.84         0.53 
TCGA-06-0214 TCGA-06-0219 TCGA-06-0221 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 
       15.02         0.72        19.82        13.32        20.42        48.69 
TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0412 TCGA-06-0413 TCGA-06-0644 
       10.82         9.01         0.26         9.57         3.16        12.62 
TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 
        5.75         9.80         2.10        23.57        14.20        26.40 
TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 
       46.88         7.86         2.70         2.70         0.92        43.46 
TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 
       46.19         5.65         7.17        40.41        16.57        20.78 
TCGA-06-0939 TCGA-06-1086 TCGA-06-1800 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 
       26.76         6.84        26.79        15.32        13.61        33.90 
TCGA-06-1806 TCGA-06-2558 TCGA-06-2559 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 
       15.32        12.49         4.93        12.56        30.64         5.95 
TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 
       16.64         5.98         4.37        31.50        11.74         3.55 
TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 
        8.35         4.54         8.81         8.98         8.55         6.71 
TCGA-06-5418 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 
        2.73         6.15         4.57         5.23         7.79         5.39 
TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6699 
        1.48       120.56         7.36         8.32        12.85         1.55 
TCGA-06-6700 TCGA-06-6701 TCGA-06-A5U1 TCGA-06-A6S0 TCGA-06-A6S1 TCGA-06-A7TK 
        4.77         4.96         1.87         3.12         2.56         5.39 
TCGA-06-A7TL TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 
        5.42        22.68        37.84         4.18       115.86         1.74 
TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 
        8.42        25.71        12.16        65.33         1.28         8.42 
TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 
       24.56        31.10        37.58        22.29         3.39        12.23 
TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 
       15.35        13.97         0.72        12.56         4.27        42.15 
TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 
       11.08        19.59        58.68        19.33        10.75         4.80 
TCGA-08-0525 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0620 TCGA-12-0654 
       15.98        15.35        14.73        12.99        10.45         7.59 
TCGA-12-0656 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 
       94.78        38.17        25.97        26.66        12.13         3.65 
TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0775 TCGA-12-0776 
       20.38        28.41        15.06        53.85         7.63         9.73 
TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 
       14.93        14.86        91.76        24.79        18.48        10.62 
TCGA-12-0822 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1091 
       23.51         8.94        20.58       127.59         5.82        33.21 
TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 
       21.73        15.98        12.23        15.85         9.11        14.53 
TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 
       25.68        14.73         6.77        59.77        44.02        26.93 
TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-5295 TCGA-12-5299 
       15.22        10.95        12.69        34.92        14.93         3.22 
TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 
        2.04        15.12        11.97         0.95        23.05         2.24 
TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 TCGA-14-0862 TCGA-14-0866 TCGA-14-1034 
       11.24        13.78         3.25         2.89        26.33        15.95 
TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 
       19.30         0.79         1.38         1.12         3.75        32.05 
TCGA-14-1450 TCGA-14-1451 TCGA-14-1453 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 
       58.78        23.11         1.15         0.92        40.96         6.67 
TCGA-14-1459 TCGA-14-1795 TCGA-14-1821 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 
       12.43         1.97        17.79         7.63         5.88         7.17 
TCGA-14-2554 TCGA-14-2555 TCGA-14-4157 TCGA-15-1444 TCGA-15-1446 TCGA-15-1447 
       17.49         7.96         3.42        50.53        19.10        53.19 
TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 
        3.91        17.59        26.07        16.37         4.31        29.03 
TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 
        4.57        10.29        14.01         9.14        21.24        13.97 
TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 TCGA-19-0963 TCGA-19-0964 
        6.41        11.77        21.90         8.61        14.27         3.39 
TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 TCGA-19-1390 
       10.75         9.07         5.95        12.95         4.64        25.38 
TCGA-19-1392 TCGA-19-1787 TCGA-19-1789 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 
        3.65        12.66         3.25         9.67         4.87         1.08 
TCGA-19-2623 TCGA-19-2624 TCGA-19-2629 TCGA-19-2631 TCGA-19-5947 TCGA-19-5950 
        7.53         0.16        24.23         7.00         6.64        17.19 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 
        8.02        18.90         4.73        12.10         1.78        22.49 
TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-19-A60I TCGA-19-A6J4 TCGA-19-A6J5 
       14.07        16.80        14.96        17.79         3.98        28.54 
TCGA-26-1438 TCGA-26-1439 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 
       10.03        13.87        31.33         7.13         9.37         9.40 
TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6174 
       14.86         5.49         8.88        18.97         1.58         2.33 
TCGA-26-A7UX TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 
       19.33         5.06        16.60         9.86        24.23        40.54 
TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 
       21.30        30.05        14.04        11.51        24.76        10.39 
TCGA-27-2521 TCGA-27-2523 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 
       10.39        16.08         2.86        14.40        15.78         0.20 
TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 
        2.53         9.21         8.35         7.63         8.48         1.22 
TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 TCGA-28-2513 
        1.55         2.83         0.13         0.66         6.74         7.30 
TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 
        5.26        14.93        11.28        17.88        14.53        11.77 
TCGA-28-5213 TCGA-28-5215 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1973 
       31.27        11.01        22.68        12.76         5.42        21.07 
TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 
        0.49         0.10        15.85        19.50         1.18         4.67 
TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 
       12.69        16.93        12.23        20.78        15.02        15.95 
TCGA-32-2616 TCGA-32-2638 TCGA-32-4208 TCGA-32-4211 TCGA-32-4213 TCGA-41-2571 
        7.36        25.18        21.14        12.59        19.86         0.85 
TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 
       13.35         8.94         9.53         0.99         4.44        11.84 
TCGA-41-4097 TCGA-41-6646 TCGA-4W-AA9S TCGA-4W-AA9T TCGA-74-6573 TCGA-74-6575 
        0.20        12.46         4.14        14.76         3.45        20.91 
TCGA-74-6577 TCGA-74-6581 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 
        4.34         8.22         4.80         4.54         3.09         3.65 
TCGA-76-4931 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 
        9.17        10.78        16.70         3.29         2.70        11.38 
TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 
       17.06         8.35        20.98         4.83         5.03         0.23 
TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        9.27         7.73         7.79         1.61        17.72        26.30 
TCGA-OX-A56R TCGA-RR-A6KA TCGA-RR-A6KC TCGA-CS-4938 TCGA-CS-4942 TCGA-CS-4943 
        5.92         6.28        20.55         4.70        43.89        18.15 
TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 
       10.62        64.64        40.18         0.10        21.01         9.96 
TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6666 TCGA-CS-6667 
        6.38        17.69        23.84        17.95         8.48         7.56 
TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 
        8.02         7.40         6.61       122.73        81.96        75.25 
TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 
       47.93        72.92        50.17        44.52        36.56        78.28 
TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE 
       46.42        18.84        30.21        46.72        39.78        37.45 
TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q 
       33.57        72.95        31.63        25.48        30.12         5.98 
TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X 
       31.40        27.45        27.81        29.23        14.40        18.51 
TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 
       12.10        11.24        17.88        30.74        16.18        19.96 
TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A66B TCGA-DH-A66D 
       31.82        30.31        14.40         8.02        42.05        27.81 
TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU 
       17.19        17.19        54.25        13.12        13.38         3.45 
TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 
       18.61        18.02        14.56        17.46         6.74        13.38 
TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 
        8.45         6.81       182.33        18.94        17.49        15.16 
TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 
       52.11        22.42        49.02        75.16        46.06        65.75 
TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 
       87.45         7.04        11.64       133.74        19.89        16.83 
TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 
       94.52       114.08         7.96         7.73        11.47        62.96 
TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7014 
      156.23       138.28       105.21         6.54         8.84       117.40 
TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 
       90.77        30.67        26.30         7.96        94.32        18.94 
TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7306 TCGA-DU-7309 
       44.02        62.01        25.91        60.30        41.98         2.76 
TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8166 TCGA-DU-8167 
        5.10        23.74        20.68        21.40        16.96        15.48 
TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TU TCGA-DU-A5TW 
       14.17        14.24        12.59        15.12         3.65         5.65 
TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 
       12.20         8.65         2.70        77.98         7.23         5.98 
TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 
       11.41        26.76         7.13        21.30        17.98       124.50 
TCGA-DU-A7TA TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 
       77.88        23.51         7.50        44.42         0.56        50.14 
TCGA-E1-5303 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 
       67.46        79.99        57.93       134.27        78.21        95.57 
TCGA-E1-5322 TCGA-E1-A7YO TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7Z6 TCGA-EZ-7264 
      130.78        75.02        32.45        36.82        32.35        14.33 
TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 
        0.23         0.20        25.48        34.36        36.82        18.77 
TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 
       14.93        24.99        23.97        18.44        15.35        17.88 
TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 
       22.55        20.61        20.09        12.95        13.68        14.24 
TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT 
       16.01        20.09        14.96        22.52        32.61        38.27 
TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K 
       10.72        18.38        18.71        23.70        14.76        17.82 
TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z 
       16.41        15.02        16.44        22.26        28.54        10.78 
TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 
       36.66        48.69        20.45        13.58         5.72        27.52 
TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 
        0.10         6.67        11.54        40.11         0.13         0.03 
TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 
       16.54         3.75         6.54        24.26         6.38        40.34 
TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 
       75.19        95.93       106.95       172.77         4.01         5.03 
TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 
       29.85        23.18       122.47         4.57        17.29         3.16 
TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 
       22.06        45.99        56.09        57.60         0.23        14.27 
TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 
        0.16        16.24         0.76        44.68         6.05        42.74 
TCGA-HT-7687 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 
        0.10        14.96         0.10         0.10         2.96        17.52 
TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 
        6.90        14.53        39.48        19.23        39.09         0.23 
TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 
       50.63         0.49        23.61        37.15         0.33         0.13 
TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 
        3.68         5.33        35.47         3.72        11.28        31.43 
TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 
        1.64        16.24         9.40        63.55         0.10        37.87 
TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 
       33.01        12.23         6.25         0.10         0.46         2.50 
TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8563 
        5.56        13.78         0.23        29.59        34.19        28.27 
TCGA-HT-8564 TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB 
       15.72        26.04         0.13         0.07        27.35         0.10 
TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 
        5.33         2.70        16.93         1.81        16.14        16.83 
TCGA-HT-A619 TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K 
       21.40        17.52        17.65         2.43        10.52        15.35 
TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 
       11.05         0.10        29.92        19.89         8.32        19.23 
TCGA-HW-7491 TCGA-HW-7493 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 
       40.18        35.90         4.31        21.70        21.60        19.59 
TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 
       17.82        20.35        12.76        20.81        20.71        19.00 
TCGA-IK-8125 TCGA-KT-A74X TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY 
       42.77        14.40         0.23         6.71         1.64         2.37 
TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 
        2.30         4.11         5.88         7.63         0.76         1.28 
TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 
        0.16        10.42        13.25        11.64         0.20         9.01 
TCGA-P5-A733 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z 
       13.61        15.16         2.53        12.62        15.85        14.04 
TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ 
       19.33        14.83        13.61        12.23         2.20         9.17 
TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA 
       10.29        14.53        16.34        16.73         1.91        16.50 
TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO 
        5.03        11.08        12.99        88.83        94.03        32.65 
TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 
       59.38        30.87         5.46         9.90        28.08         2.07 
TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW 
       19.59        30.67        62.17        87.12        18.77        37.84 
TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 
       34.49        31.33        28.70        22.95        17.62        23.64 
TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB 
       32.61        16.08        98.24        95.93         5.85       106.39 
TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL 
       69.50        72.59        80.12        32.45        84.99        31.10 
TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS 
       15.91        18.61        15.16        14.07        36.13         7.92 
TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 
       22.32        23.51         7.13        20.02         8.19         2.04 
TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 
       17.03        15.06        13.12        28.37        13.02       169.84 
TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V 
       10.39        99.06        30.05        98.63        31.59        18.71 
TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B 
       49.45        48.33        49.32        34.78        48.39        24.92 
TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J 
       16.18        59.05        40.64        30.44        28.08        24.16 
TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S 
       40.83        24.79        33.24        25.38        18.61        14.93 
TCGA-TM-A84T TCGA-TQ-A7RH TCGA-TQ-A7RW TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CB 
       23.80        15.98        26.99        43.04        30.08         0.10 
TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS 
        7.89        35.93        23.47        37.05        16.01        23.21 
TCGA-VW-A8FI TCGA-W9-A837 TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B 
        8.05        51.06        43.96        39.88        43.40        45.80 
TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       46.88        37.71        20.81 

  AMP PEAK  4(1Q44) MUTATED AMP PEAK  4(1Q44) WILD-TYPE 
                       0.10                        0.03 
  AMP PEAK  4(1Q44) MUTATED AMP PEAK  4(1Q44) WILD-TYPE 
                     211.17                      182.33 
  AMP PEAK  4(1Q44) MUTATED AMP PEAK  4(1Q44) WILD-TYPE 
                     13.415                      14.960 
[1] "0.1 - 211.2 (13.4)" "0.0 - 182.3 (15.0)"
[1] "hr=" "1.7"
D4V2, continuous
D4V3, binary
                             cls
clus                            0   1
  AMP PEAK  4(1Q44) MUTATED    98  26
  AMP PEAK  4(1Q44) WILD-TYPE 472 446
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  4(1Q44) MUTATED     98   26
  AMP PEAK  4(1Q44) WILD-TYPE  472  446
                        clus
vv                       AMP PEAK  4(1Q44) MUTATED AMP PEAK  4(1Q44) WILD-TYPE
  BRAIN                                         98                         472
  CENTRAL NERVOUS SYSTEM                        26                         446
[1] 2 2
[1] FALSE
D4V4, binary
                             cls
clus                            0   1
  AMP PEAK  4(1Q44) MUTATED    56  68
  AMP PEAK  4(1Q44) WILD-TYPE 374 544
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  4(1Q44) MUTATED     56   68
  AMP PEAK  4(1Q44) WILD-TYPE  374  544
        clus
vv       AMP PEAK  4(1Q44) MUTATED AMP PEAK  4(1Q44) WILD-TYPE
  FEMALE                        56                         374
  MALE                          68                         544
[1] 2 2
[1] FALSE
D4V5, continuous
                             vv
clus                          ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  AMP PEAK  4(1Q44) MUTATED            13                             1
  AMP PEAK  4(1Q44) WILD-TYPE         163                            26
                             vv
clus                          OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  AMP PEAK  4(1Q44) MUTATED                  4                 9
  AMP PEAK  4(1Q44) WILD-TYPE              114               169
                             vv
clus                          TREATED PRIMARY GBM
  AMP PEAK  4(1Q44) MUTATED                     3
  AMP PEAK  4(1Q44) WILD-TYPE                  15
                             vv
clus                          UNTREATED PRIMARY (DE NOVO) GBM
  AMP PEAK  4(1Q44) MUTATED                                94
  AMP PEAK  4(1Q44) WILD-TYPE                             431
D4V6, multiclass
                                 clus
vv                                AMP PEAK  4(1Q44) MUTATED
  ASTROCYTOMA                                            13
  GLIOBLASTOMA MULTIFORME (GBM)                           1
  OLIGOASTROCYTOMA                                        4
  OLIGODENDROGLIOMA                                       9
  TREATED PRIMARY GBM                                     3
  UNTREATED PRIMARY (DE NOVO) GBM                        94
                                 clus
vv                                AMP PEAK  4(1Q44) WILD-TYPE
  ASTROCYTOMA                                             163
  GLIOBLASTOMA MULTIFORME (GBM)                            26
  OLIGOASTROCYTOMA                                        114
  OLIGODENDROGLIOMA                                       169
  TREATED PRIMARY GBM                                      15
  UNTREATED PRIMARY (DE NOVO) GBM                         431
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D4V7, binary
                             cls
clus                            0   1
  AMP PEAK  4(1Q44) MUTATED    76  48
  AMP PEAK  4(1Q44) WILD-TYPE 398 520
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  4(1Q44) MUTATED     76   48
  AMP PEAK  4(1Q44) WILD-TYPE  398  520
     clus
vv    AMP PEAK  4(1Q44) MUTATED AMP PEAK  4(1Q44) WILD-TYPE
  NO                         76                         398
  YES                        48                         520
[1] 2 2
[1] FALSE
                             vv
clus                          AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK  4(1Q44) MUTATED                                  0     4
  AMP PEAK  4(1Q44) WILD-TYPE                                1    17
                             vv
clus                          BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK  4(1Q44) MUTATED                           9   103
  AMP PEAK  4(1Q44) WILD-TYPE                        55   819
D4V8, multiclass
                                  clus
vv                                 AMP PEAK  4(1Q44) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                         0
  ASIAN                                                    4
  BLACK OR AFRICAN AMERICAN                                9
  WHITE                                                  103
                                  clus
vv                                 AMP PEAK  4(1Q44) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                           1
  ASIAN                                                     17
  BLACK OR AFRICAN AMERICAN                                 55
  WHITE                                                    819
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D4V9, binary
                             cls
clus                            0   1
  AMP PEAK  4(1Q44) MUTATED     3 101
  AMP PEAK  4(1Q44) WILD-TYPE  27 790
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  4(1Q44) MUTATED      3  101
  AMP PEAK  4(1Q44) WILD-TYPE   27  790
                        clus
vv                       AMP PEAK  4(1Q44) MUTATED AMP PEAK  4(1Q44) WILD-TYPE
  HISPANIC OR LATINO                             3                          27
  NOT HISPANIC OR LATINO                       101                         790
[1] 2 2
[1] FALSE

Clustering(5) Variable = AMP PEAK  5(2P24.3) MUTATION ANALYSIS
D5V1, survival
                               sevent
clus2                             0   1
  AMP PEAK  5(2P24.3) MUTATED    23  47
  AMP PEAK  5(2P24.3) WILD-TYPE 457 512
  AMP PEAK  5(2P24.3) MUTATED AMP PEAK  5(2P24.3) WILD-TYPE 
                           70                           969 
  AMP PEAK  5(2P24.3) MUTATED AMP PEAK  5(2P24.3) WILD-TYPE 
                           47                           512 
$`AMP PEAK  5(2P24.3) MUTATED`
TCGA-02-0001 TCGA-02-0014 TCGA-02-0104 TCGA-02-0113 TCGA-02-0258 TCGA-02-0281 
       11.77        82.59        65.00        92.65        16.54         3.98 
TCGA-06-0133 TCGA-06-0151 TCGA-06-0192 TCGA-06-0216 TCGA-06-0221 TCGA-06-0649 
       14.30        46.59        38.96        24.16        19.82         2.10 
TCGA-06-0877 TCGA-06-1086 TCGA-06-1087 TCGA-06-1802 TCGA-06-2557 TCGA-06-2569 
        5.65         6.84         4.04        15.32         1.08         0.43 
TCGA-06-5856 TCGA-06-6391 TCGA-08-0346 TCGA-08-0386 TCGA-08-0510 TCGA-08-0517 
        3.75         1.48         8.42        18.02         4.27        58.68 
TCGA-12-0619 TCGA-12-0773 TCGA-12-0778 TCGA-12-1099 TCGA-12-3653 TCGA-14-0740 
       34.92        43.23        14.93         4.14        14.53        11.97 
TCGA-14-0817 TCGA-14-0871 TCGA-14-1823 TCGA-14-3477 TCGA-16-0846 TCGA-16-0850 
        5.39        28.93        17.85         3.78         3.91        16.37 
TCGA-19-0957 TCGA-19-1786 TCGA-19-2629 TCGA-19-A60I TCGA-26-1439 TCGA-26-1442 
       21.90         7.17        24.23        17.79        13.87        31.33 
TCGA-26-5133 TCGA-27-1834 TCGA-27-1836 TCGA-28-5218 TCGA-32-4210 TCGA-41-2573 
       14.86        40.54        30.05         5.16         3.72         8.94 
TCGA-74-6584 TCGA-DB-5274 TCGA-DH-A669 TCGA-DH-A7UR TCGA-DU-6407 TCGA-DU-8165 
        7.50        75.25        30.21        54.25        94.52        19.13 
TCGA-E1-5304 TCGA-E1-A7YV TCGA-FG-A711 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A5R5 
       41.13        32.45        48.69        15.72         0.23         0.13 
TCGA-HT-A61B TCGA-HW-A5KM TCGA-P5-A5F2 TCGA-S9-A6U0 TCGA-S9-A6WM TCGA-S9-A7J0 
       17.52        20.71         7.63        22.95        19.86        20.02 
TCGA-TM-A84Q TCGA-VM-A8CA TCGA-VM-A8CD TCGA-VW-A8FI 
       25.38        13.51         7.89         8.05 

$`AMP PEAK  5(2P24.3) WILD-TYPE`
TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 TCGA-02-0011 
        4.73        18.35        23.18        10.59        35.41        20.71 
TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 TCGA-02-0025 
       20.61        87.06        77.65        20.12        53.10        42.74 
TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 
       24.59        12.16        90.58         2.83        14.14         3.62 
TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 
       10.72        10.52        18.31         6.87        14.73         3.22 
TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 TCGA-02-0058 
       15.09        12.59         6.54         2.50        19.86         8.35 
TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 
        9.57         6.02        19.73        26.43        28.70        25.05 
TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 
        5.49        10.19        20.84        27.25        89.72        22.72 
TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 
       12.62        51.32         8.81        57.76        16.96         3.48 
TCGA-02-0102 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0114 TCGA-02-0115 
       27.02        11.67        17.65        23.18        99.98        15.65 
TCGA-02-0116 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0285 
       48.95        16.93        17.72        10.75        14.47        13.87 
TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 
       14.20        15.95        12.23         9.90         7.73        10.62 
TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 
        7.33        15.91        25.71         4.37        25.12        10.59 
TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 
       12.39        14.50        10.55        47.11        11.34         9.27 
TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 
       16.21         3.35        16.80        12.92        15.32        15.45 
TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 
       20.32         2.70         6.15        20.38        47.61         6.94 
TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 
        3.98        22.72        33.67        12.95        25.35        26.70 
TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 
       24.23        11.90         0.20        10.29         2.20        11.74 
TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 
        2.33        20.09        17.79        10.09         8.61        19.46 
TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 
       12.33        13.94        10.45         3.19        10.82         9.44 
TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 
       11.80         3.42        56.91        10.65         5.85        19.66 
TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 
        3.29        13.12         4.47         3.22         4.04        91.00 
TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 
        4.18        88.14        20.25         3.65        69.90        73.84 
TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0194 TCGA-06-0195 
       27.22        44.58        15.42        10.42         4.67         7.40 
TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 
        5.56         0.39         7.66         8.42         7.63         7.40 
TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0219 TCGA-06-0237 TCGA-06-0238 
       11.84         0.53        15.02         0.72        13.64        13.32 
TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 
       20.42        48.69        10.82         9.01         0.26        72.36 
TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 
        4.70         9.57         3.16        35.11        12.62         5.75 
TCGA-06-0646 TCGA-06-0648 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        5.75         9.80        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 
        7.17        40.41        16.57        20.78        26.76        23.93 
TCGA-06-1800 TCGA-06-1801 TCGA-06-1804 TCGA-06-1805 TCGA-06-1806 TCGA-06-2558 
       26.79        11.84        13.61        33.90        15.32        12.49 
TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 
        4.93        17.65        12.56        30.64         5.95        16.64 
TCGA-06-2566 TCGA-06-2567 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 
        5.98         4.37        31.50        11.74         3.55         8.35 
TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 
        4.54         8.81         8.98         8.55         6.71         2.73 
TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6693 
        6.15         4.57         5.23         7.79         5.39       120.56 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.32        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-06-A5U0 TCGA-06-A5U1 TCGA-06-A6S0 TCGA-06-A6S1 TCGA-06-A7TK 
        4.96         4.70         1.87         3.12         2.56         5.39 
TCGA-06-A7TL TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 
        5.42        22.68        37.84         4.18       115.86         1.74 
TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 
       25.71        12.16         9.80        29.23        65.33         1.28 
TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 
        8.42        17.95        24.56        31.10        37.58        22.29 
TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 
        3.39        12.23        14.93        15.35        13.97         0.72 
TCGA-08-0509 TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 TCGA-08-0518 TCGA-08-0520 
       12.56        42.15        11.08        19.59        19.33        10.75 
TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 
        4.80         7.27        15.98        18.41         7.56        15.35 
TCGA-12-0616 TCGA-12-0618 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 
       14.73        12.99        10.45         7.59        94.78         0.10 
TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 
       38.17        25.97        26.66        12.13         3.65        20.38 
TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0775 TCGA-12-0776 TCGA-12-0780 
       28.41        15.06        53.85         7.63         9.73        14.86 
TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 
       91.76        24.79        18.48        10.62        23.51        27.78 
TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 
       38.76         8.94        20.58       127.59         5.82         7.59 
TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 
       33.21        21.73        15.98        12.23        15.85         9.11 
TCGA-12-1097 TCGA-12-1098 TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 
       14.53         3.98        15.65        25.68        14.73         6.77 
TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 
       59.77        44.02        26.93        15.22        10.95        12.69 
TCGA-12-3652 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0781 
       34.92        14.93         3.22         2.04        15.12         0.95 
TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 
        6.21        23.05         2.24        11.24        13.78         3.25 
TCGA-14-0813 TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 TCGA-14-0867 TCGA-14-1034 
        1.35         2.89        16.50        26.33         2.04        15.95 
TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 
       19.30         0.79         1.38         1.12         3.75        32.05 
TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 
       58.78        23.11         7.10         1.15        30.18         0.92 
TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 
       40.96         6.67        12.43         0.99         1.97        17.79 
TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-4157 
        7.63         5.88         7.17        17.49         7.96         3.42 
TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 TCGA-15-1447 TCGA-15-1449 TCGA-16-0848 
       13.78        50.53        19.10        53.19        13.28        17.59 
TCGA-16-0849 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 
       26.07         4.31        29.03         4.57        10.29        14.01 
TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 TCGA-19-0960 
        9.14        21.24        13.97         6.41        11.77         8.61 
TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 
        0.66        14.27         3.39        10.75         9.07         5.95 
TCGA-19-1388 TCGA-19-1389 TCGA-19-1390 TCGA-19-1392 TCGA-19-1787 TCGA-19-1789 
       12.95         4.64        25.38         3.65        12.66         3.25 
TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 
        0.13         9.67         4.87         1.08         7.53         0.16 
TCGA-19-2625 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 
        4.08         7.00         7.04         6.64        17.19         8.02 
TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 
       18.90         4.73        12.10         1.78        22.49        14.07 
TCGA-19-5959 TCGA-19-5960 TCGA-19-A6J4 TCGA-19-A6J5 TCGA-26-1438 TCGA-26-1440 
       16.80        14.96         3.98        28.54        10.03         9.73 
TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 
        7.13         9.37         9.40         5.49         8.88        18.97 
TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-26-A7UX TCGA-27-1830 TCGA-27-1831 
        1.58         7.92         2.33        19.33         5.06        16.60 
TCGA-27-1832 TCGA-27-1833 TCGA-27-1835 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 
        9.86        24.23        21.30        14.04        11.51        24.76 
TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 
       10.39        10.39        16.08         7.59         2.86        14.40 
TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 
       15.78         0.20         2.53         9.21         8.35         7.63 
TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 
        8.48         1.22         1.55         2.83         0.13         0.66 
TCGA-28-2506 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 
        6.74         4.77         7.30         5.26        14.93        11.28 
TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 
       17.88        14.53        11.77        31.27        23.44        11.01 
TCGA-28-5216 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 
       13.64        22.68        12.76         5.42        15.39        21.07 
TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 
        0.49         0.10        15.85        19.50         1.18         4.67 
TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 
       12.69        14.86        16.93        12.23        20.78        15.02 
TCGA-32-2615 TCGA-32-2616 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 
       15.95         7.36         8.84        22.78        25.18        21.14 
TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 
       12.59        19.86        10.85        19.23         0.85        13.35 
TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 
        9.53         0.99         4.44        11.84         0.20        15.12 
TCGA-41-6646 TCGA-4W-AA9S TCGA-4W-AA9T TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 
       12.46         4.14        14.76         3.45        20.91         4.34 
TCGA-74-6578 TCGA-74-6581 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 
       14.33         8.22         4.80         4.54         3.09         3.65 
TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 
        9.17         2.53        10.78        16.70         3.29         2.70 
TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 
       11.38        17.06         8.35        20.98         4.83         5.03 
TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 
        0.23         9.27         7.73         7.79         1.61        17.72 
TCGA-87-5896 TCGA-OX-A56R TCGA-RR-A6KA TCGA-RR-A6KC TCGA-CS-4938 TCGA-CS-4941 
       26.30         5.92         6.28        20.55         4.70         7.69 
TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 
       43.89        18.15        10.62        64.64        40.18         0.10 
TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 
       21.01         9.96         6.38        17.69        23.84        17.95 
TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 
       12.43         8.48         7.56         8.02         7.40         6.61 
TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 
      122.73        81.96        47.93        72.92        50.86        50.17 
TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB 
       44.52        36.56        78.28        46.42        18.84        30.21 
TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH 
       46.72        39.78        37.45        33.57        72.95        31.63 
TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S 
       24.20        25.48        30.12         5.98        31.40        27.45 
TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L 
       27.81        29.23        14.40        18.51        12.10        11.24 
TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 
       17.88        30.74        16.18        19.96        31.82        30.31 
TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G 
       14.40         8.02        42.05        27.81        17.19        17.19 
TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 
       13.12        13.38         3.45        18.61        18.02        14.56 
TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 
       17.46         6.74        13.38         8.45         6.81       182.33 
TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 
       18.94        17.49        15.16       211.17        52.11        22.42 
TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 
       49.02        75.16        46.06        65.75         1.22        87.45 
TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6408 
        7.04        11.64       133.74        19.89        16.83       114.08 
TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 
        7.96         7.73        11.47        62.96       156.23       138.28 
TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7014 TCGA-DU-7015 
       14.99       105.21         6.54         8.84       117.40        90.77 
TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 
       30.67        26.30        10.36         7.96        94.32        18.94 
TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 
       44.02        62.01        25.91        60.30        23.31        41.98 
TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 
        2.76         5.10        23.74        14.60        20.68        21.40 
TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS 
       16.96        15.48        14.17        14.24        12.59        15.12 
TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 
        4.96         3.65         5.65        12.20         8.65         2.70 
TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O 
       77.98         7.23         5.98        11.41        26.76         7.13 
TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC 
       21.30        17.98       124.50        77.88        42.31        23.51 
TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5305 
        7.50        44.42         0.56        50.14        67.46        79.99 
TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YO 
       57.93       134.27        78.21        95.57       130.78        75.02 
TCGA-E1-A7YW TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 
       36.82        32.35        14.33         0.23         0.20        47.77 
TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 
       25.48        34.36        36.82        18.77        14.93        24.99 
TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7638 TCGA-FG-7641 
       23.97        18.44        15.35        17.88        22.55        20.61 
TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 
       20.09        12.95        13.68        14.24        16.01        20.09 
TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW 
       14.96        22.52        32.61        38.27        10.72        18.38 
TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ 
       18.71        23.70        14.76        17.82        16.41        15.02 
TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A713 
       16.44        22.26        28.54        10.78        36.66        20.45 
TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 
       13.58         5.72        27.52         0.10         6.67        11.54 
TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 
       40.11         0.13         0.03        16.54         3.75        17.42 
TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 
        6.54        24.26         6.38        40.34        75.19        95.93 
TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 
      106.95       172.77         4.01         5.03        29.85        23.18 
TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 
      122.47         4.57        17.29         3.16        22.06        45.99 
TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 
       56.09        57.60         0.23        14.27         0.16        16.24 
TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 
        0.76        44.68         6.05        42.74         0.10        31.69 
TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 
       14.96         0.10         0.10         2.96        17.52         6.90 
TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 
       14.53        39.48        19.23        39.09         0.23        50.63 
TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 
        0.49        23.61        37.15         0.33         0.13         3.68 
TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 
        5.33        35.47         3.72        11.28        31.43         1.64 
TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 
       16.24         9.40        63.55         0.10        37.87        33.01 
TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 
       12.23         6.25         0.10         0.46         2.50         5.56 
TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8563 TCGA-HT-A4DV 
       13.78         0.23        29.59        34.19        28.27        26.04 
TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 
       20.22         0.07        27.35         0.10         5.33         2.70 
TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61C 
       16.93         1.81        16.14        16.83        21.40        17.65 
TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 
        2.43        10.52        15.35        11.05         0.10        29.92 
TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7493 TCGA-HW-7495 
       19.89         8.32        19.23        40.18        35.90         4.31 
TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK 
       21.70        21.60        19.59        17.82        20.35        12.76 
TCGA-HW-A5KL TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV 
       20.81        19.00        42.77        14.40        14.40         0.23 
TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 
        6.71         1.64         2.37         2.30         4.11         5.88 
TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z 
        0.76         1.28         0.16        10.42        13.25        11.64 
TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V 
        0.20         9.01        13.61        15.16         2.53        12.62 
TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW 
       15.85        14.04        19.33        14.83        14.53        13.61 
TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 
       12.23         2.20         9.17        10.29        14.53        16.34 
TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 
       16.73         1.91        16.50         5.03        11.08        12.99 
TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y 
       88.83        94.03        32.65        59.38        30.87         5.46 
TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS 
        9.90        28.08         2.07        19.59        30.67        62.17 
TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ 
       87.12        18.77        37.84        34.49        31.33        28.70 
TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 
       17.62        23.64        32.61        16.08        98.24        95.93 
TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH 
        5.85       106.39        69.50        72.59        80.12        32.45 
TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ 
       84.99        31.10        15.91        18.61        15.16        14.07 
TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J1 
       36.13         7.92        22.32        23.51         7.13         8.19 
TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ 
        2.04        17.03        15.06        13.12        28.37        13.02 
TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 
      169.84        10.39        99.06        30.05        98.63        31.59 
TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA 
       18.71        11.97        49.45        48.33        49.32        34.78 
TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H 
       48.39        24.92        16.18        59.05        40.64        30.44 
TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84R 
       28.08        24.16        40.83        24.79        33.24        18.61 
TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RH TCGA-TQ-A7RW TCGA-VM-A8C8 TCGA-VM-A8C9 
       14.93        23.80        15.98        26.99        43.04        30.08 
TCGA-VM-A8CB TCGA-VM-A8CE TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS 
        0.10        35.93        23.47        37.05        16.01        23.21 
TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B 
       51.06        13.32        43.96        39.88        43.40        45.80 
TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       46.88        37.71        20.81 

  AMP PEAK  5(2P24.3) MUTATED AMP PEAK  5(2P24.3) WILD-TYPE 
                         0.13                          0.03 
  AMP PEAK  5(2P24.3) MUTATED AMP PEAK  5(2P24.3) WILD-TYPE 
                        94.52                        211.17 
  AMP PEAK  5(2P24.3) MUTATED AMP PEAK  5(2P24.3) WILD-TYPE 
                       16.045                        14.730 
[1] "0.1 - 94.5 (16.0)"  "0.0 - 211.2 (14.7)"
[1] "hr=" "1.2"
D5V2, continuous
D5V3, binary
                               cls
clus                              0   1
  AMP PEAK  5(2P24.3) MUTATED    49  21
  AMP PEAK  5(2P24.3) WILD-TYPE 521 451
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  5(2P24.3) MUTATED     49   21
  AMP PEAK  5(2P24.3) WILD-TYPE  521  451
                        clus
vv                       AMP PEAK  5(2P24.3) MUTATED
  BRAIN                                           49
  CENTRAL NERVOUS SYSTEM                          21
                        clus
vv                       AMP PEAK  5(2P24.3) WILD-TYPE
  BRAIN                                            521
  CENTRAL NERVOUS SYSTEM                           451
[1] 2 2
[1] FALSE
D5V4, binary
                               cls
clus                              0   1
  AMP PEAK  5(2P24.3) MUTATED    33  37
  AMP PEAK  5(2P24.3) WILD-TYPE 397 575
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  5(2P24.3) MUTATED     33   37
  AMP PEAK  5(2P24.3) WILD-TYPE  397  575
        clus
vv       AMP PEAK  5(2P24.3) MUTATED AMP PEAK  5(2P24.3) WILD-TYPE
  FEMALE                          33                           397
  MALE                            37                           575
[1] 2 2
[1] FALSE
D5V5, continuous
                               vv
clus                            ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  AMP PEAK  5(2P24.3) MUTATED            11                             2
  AMP PEAK  5(2P24.3) WILD-TYPE         165                            25
                               vv
clus                            OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  AMP PEAK  5(2P24.3) MUTATED                  2                 8
  AMP PEAK  5(2P24.3) WILD-TYPE              116               170
                               vv
clus                            TREATED PRIMARY GBM
  AMP PEAK  5(2P24.3) MUTATED                     1
  AMP PEAK  5(2P24.3) WILD-TYPE                  17
                               vv
clus                            UNTREATED PRIMARY (DE NOVO) GBM
  AMP PEAK  5(2P24.3) MUTATED                                46
  AMP PEAK  5(2P24.3) WILD-TYPE                             479
D5V6, multiclass
                                 clus
vv                                AMP PEAK  5(2P24.3) MUTATED
  ASTROCYTOMA                                              11
  GLIOBLASTOMA MULTIFORME (GBM)                             2
  OLIGOASTROCYTOMA                                          2
  OLIGODENDROGLIOMA                                         8
  TREATED PRIMARY GBM                                       1
  UNTREATED PRIMARY (DE NOVO) GBM                          46
                                 clus
vv                                AMP PEAK  5(2P24.3) WILD-TYPE
  ASTROCYTOMA                                               165
  GLIOBLASTOMA MULTIFORME (GBM)                              25
  OLIGOASTROCYTOMA                                          116
  OLIGODENDROGLIOMA                                         170
  TREATED PRIMARY GBM                                        17
  UNTREATED PRIMARY (DE NOVO) GBM                           479
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D5V7, binary
                               cls
clus                              0   1
  AMP PEAK  5(2P24.3) MUTATED    36  34
  AMP PEAK  5(2P24.3) WILD-TYPE 438 534
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  5(2P24.3) MUTATED     36   34
  AMP PEAK  5(2P24.3) WILD-TYPE  438  534
     clus
vv    AMP PEAK  5(2P24.3) MUTATED AMP PEAK  5(2P24.3) WILD-TYPE
  NO                           36                           438
  YES                          34                           534
[1] 2 2
[1] FALSE
                               vv
clus                            AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK  5(2P24.3) MUTATED                                  0     1
  AMP PEAK  5(2P24.3) WILD-TYPE                                1    20
                               vv
clus                            BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK  5(2P24.3) MUTATED                           6    60
  AMP PEAK  5(2P24.3) WILD-TYPE                        58   862
D5V8, multiclass
                                  clus
vv                                 AMP PEAK  5(2P24.3) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                           0
  ASIAN                                                      1
  BLACK OR AFRICAN AMERICAN                                  6
  WHITE                                                     60
                                  clus
vv                                 AMP PEAK  5(2P24.3) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                             1
  ASIAN                                                       20
  BLACK OR AFRICAN AMERICAN                                   58
  WHITE                                                      862
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D5V9, binary
                               cls
clus                              0   1
  AMP PEAK  5(2P24.3) MUTATED     2  58
  AMP PEAK  5(2P24.3) WILD-TYPE  28 833
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  5(2P24.3) MUTATED      2   58
  AMP PEAK  5(2P24.3) WILD-TYPE   28  833
                        clus
vv                       AMP PEAK  5(2P24.3) MUTATED
  HISPANIC OR LATINO                               2
  NOT HISPANIC OR LATINO                          58
                        clus
vv                       AMP PEAK  5(2P24.3) WILD-TYPE
  HISPANIC OR LATINO                                28
  NOT HISPANIC OR LATINO                           833
[1] 2 2
[1] FALSE

Clustering(6) Variable = AMP PEAK  6(3P25.3) MUTATION ANALYSIS
D6V1, survival
                               sevent
clus2                             0   1
  AMP PEAK  6(3P25.3) MUTATED    27  55
  AMP PEAK  6(3P25.3) WILD-TYPE 453 504
  AMP PEAK  6(3P25.3) MUTATED AMP PEAK  6(3P25.3) WILD-TYPE 
                           82                           957 
  AMP PEAK  6(3P25.3) MUTATED AMP PEAK  6(3P25.3) WILD-TYPE 
                           55                           504 
$`AMP PEAK  6(3P25.3) MUTATED`
TCGA-02-0001 TCGA-02-0028 TCGA-02-0069 TCGA-02-0074 TCGA-02-0104 TCGA-02-0281 
       11.77        90.58        28.70        10.19        65.00         3.98 
TCGA-02-0324 TCGA-02-0325 TCGA-06-0145 TCGA-06-0166 TCGA-06-0188 TCGA-06-0192 
        7.73        10.62         2.33         5.85        44.58        38.96 
TCGA-06-0211 TCGA-06-0237 TCGA-06-0410 TCGA-06-0413 TCGA-06-0414 TCGA-06-0649 
       11.84        13.64         4.70         3.16        35.11         2.10 
TCGA-06-0686 TCGA-06-0743 TCGA-06-0747 TCGA-06-2557 TCGA-06-A7TL TCGA-08-0345 
       14.20        26.40         2.70         1.08         5.42         1.74 
TCGA-08-0346 TCGA-08-0510 TCGA-12-0615 TCGA-12-0822 TCGA-12-1088 TCGA-12-1099 
        8.42         4.27        15.35        23.51       127.59         4.14 
TCGA-12-1598 TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 TCGA-14-0817 TCGA-14-0871 
       15.65         6.77        59.77        44.02         5.39        28.93 
TCGA-14-1794 TCGA-14-1821 TCGA-14-1825 TCGA-14-3477 TCGA-16-1062 TCGA-19-1392 
        0.99        17.79         7.63         3.78        21.24         3.65 
TCGA-19-2629 TCGA-19-4065 TCGA-26-6174 TCGA-27-1830 TCGA-27-1834 TCGA-27-2521 
       24.23         7.04         2.33         5.06        40.54        10.39 
TCGA-28-2506 TCGA-28-2509 TCGA-28-5215 TCGA-28-5216 TCGA-28-5219 TCGA-28-6450 
        6.74         4.77        11.01        13.64        22.68         5.42 
TCGA-32-2632 TCGA-41-3915 TCGA-41-4097 TCGA-76-4934 TCGA-76-6285 TCGA-CS-6666 
        8.84        11.84         0.20         2.53         8.35         8.48 
TCGA-CS-6668 TCGA-DB-5277 TCGA-DU-6400 TCGA-DU-7014 TCGA-DU-7015 TCGA-DU-7304 
        8.02        50.86         1.22       117.40        90.77        23.31 
TCGA-DU-8158 TCGA-DU-A5TU TCGA-FG-5962 TCGA-HT-7473 TCGA-HT-7478 TCGA-HT-7603 
        5.10         3.65        47.77        16.54         6.38        23.18 
TCGA-HT-7686 TCGA-HT-8114 TCGA-HT-A4DS TCGA-P5-A5EZ TCGA-S9-A6WM TCGA-S9-A6WO 
       42.74        34.19         0.23         2.30        19.86        18.61 
TCGA-S9-A7QX TCGA-TM-A7C4 TCGA-TQ-A7RW TCGA-WY-A859 
       13.12        48.33        26.99        39.88 

$`AMP PEAK  6(3P25.3) WILD-TYPE`
TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 TCGA-02-0011 
        4.73        18.35        23.18        10.59        35.41        20.71 
TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 
       82.59        20.61        87.06        77.65        20.12        53.10 
TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 
       42.74        24.59        12.16         2.83        14.14         3.62 
TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 
       10.72        10.52        18.31         6.87        14.73         3.22 
TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 TCGA-02-0058 
       15.09        12.59         6.54         2.50        19.86         8.35 
TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0070 TCGA-02-0071 
        9.57         6.02        19.73        26.43        25.05         5.49 
TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 
       20.84        27.25        89.72        22.72        12.62        51.32 
TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0106 
        8.81        57.76        16.96         3.48        27.02        11.67 
TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 
       17.65        23.18        92.65        99.98        15.65        48.95 
TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0285 
       16.54        16.93        17.72        10.75        14.47        13.87 
TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0326 TCGA-02-0330 
       14.20        15.95        12.23         9.90         7.33        15.91 
TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 
       25.71         4.37        25.12        10.59        12.39        14.50 
TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 
       10.55        47.11        11.34         9.27        16.21         3.35 
TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 
       16.80        12.92        15.32        15.45        20.32         2.70 
TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 
        6.15        20.38        47.61         6.94         3.98        22.72 
TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 
       33.67        12.95        25.35        14.30        26.70        24.23 
TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0146 
       11.90         0.20        10.29         2.20        11.74        20.09 
TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 
       17.79        10.09         8.61        19.46        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 
       13.94        10.45         3.19        10.82         9.44        11.80 
TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 
        3.42        56.91        10.65        19.66         3.29        13.12 
TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 
        4.47         3.22         4.04        91.00         4.18        88.14 
TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0189 
       20.25         3.65        69.90        73.84        27.22        15.42 
TCGA-06-0190 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 
       10.42         4.67         7.40         5.56         0.39         7.66 
TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 
        8.42         7.63         7.40         0.53        15.02        24.16 
TCGA-06-0219 TCGA-06-0221 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 
        0.72        19.82        13.32        20.42        48.69        10.82 
TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0412 TCGA-06-0644 TCGA-06-0645 
        9.01         0.26        72.36         9.57        12.62         5.75 
TCGA-06-0646 TCGA-06-0648 TCGA-06-0650 TCGA-06-0744 TCGA-06-0745 TCGA-06-0749 
        5.75         9.80        23.57        46.88         7.86         2.70 
TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 
        0.92        43.46        46.19         5.65         7.17        40.41 
TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1087 
       16.57        20.78        26.76        23.93         6.84         4.04 
TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-1806 
       26.79        11.84        15.32        13.61        33.90        15.32 
TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 
       12.49         4.93        17.65        12.56        30.64         5.95 
TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 
       16.64         5.98         4.37         0.43        31.50        11.74 
TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 
        3.55         8.35         4.54         8.81         8.98         8.55 
TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 
        6.71         2.73         3.75         6.15         4.57         5.23 
TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 
        7.79         5.39         1.48       120.56         7.36         8.32 
TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-06-A5U0 
       12.85         4.77         1.55         4.77         4.96         4.70 
TCGA-06-A5U1 TCGA-06-A6S0 TCGA-06-A6S1 TCGA-06-A7TK TCGA-08-0244 TCGA-08-0245 
        1.87         3.12         2.56         5.39        22.68        37.84 
TCGA-08-0246 TCGA-08-0344 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 
        4.18       115.86        25.71        12.16         9.80        29.23 
TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 
       65.33         1.28         8.42        17.95        24.56        31.10 
TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 
       37.58        22.29         3.39        12.23        14.93        18.02 
TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0512 TCGA-08-0514 
       15.35        13.97         0.72        12.56        42.15        11.08 
TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 
       19.59        58.68        19.33        10.75         4.80         7.27 
TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
       15.98        18.41         7.56        14.73        12.99        34.92 
TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 
       10.45         7.59        94.78         0.10        38.17        25.97 
TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 
       26.66        12.13         3.65        20.38        28.41        15.06 
TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 
       53.85        43.23         7.63         9.73        14.93        14.86 
TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0826 TCGA-12-0827 
       91.76        24.79        18.48        10.62        27.78        38.76 
TCGA-12-0828 TCGA-12-0829 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 
        8.94        20.58         5.82         7.59        33.21        21.73 
TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 
       15.98        12.23        15.85         9.11        14.53         3.98 
TCGA-12-1599 TCGA-12-1600 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 
       25.68        14.73        26.93        15.22        10.95        12.69 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 
       34.92        14.53        14.93         3.22         2.04        15.12 
TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 
       11.97         0.95         6.21        23.05         2.24        11.24 
TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 
       13.78         3.25         1.35         2.89        16.50        26.33 
TCGA-14-0867 TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 
        2.04        15.95        19.30         0.79         1.38         1.12 
TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 
        3.75        32.05        58.78        23.11         7.10         1.15 
TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1795 
       30.18         0.92        40.96         6.67        12.43         1.97 
TCGA-14-1823 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-4157 
       17.85         5.88         7.17        17.49         7.96         3.42 
TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 TCGA-15-1447 TCGA-15-1449 TCGA-16-0846 
       13.78        50.53        19.10        53.19        13.28         3.91 
TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 
       17.59        26.07        16.37         4.31        29.03         4.57 
TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 
       10.29        14.01         9.14        13.97         6.41        11.77 
TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 
       21.90         8.61         0.66        14.27         3.39        10.75 
TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 TCGA-19-1390 TCGA-19-1786 
        9.07         5.95        12.95         4.64        25.38         7.17 
TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 
       12.66         3.25         0.13         9.67         4.87         1.08 
TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2631 TCGA-19-5947 TCGA-19-5950 
        7.53         0.16         4.08         7.00         6.64        17.19 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 
        8.02        18.90         4.73        12.10         1.78        22.49 
TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-19-A60I TCGA-19-A6J4 TCGA-19-A6J5 
       14.07        16.80        14.96        17.79         3.98        28.54 
TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 
       10.03        13.87         9.73        31.33         7.13         9.37 
TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 
        9.40        14.86         5.49         8.88        18.97         1.58 
TCGA-26-6173 TCGA-26-A7UX TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1835 
        7.92        19.33        16.60         9.86        24.23        21.30 
TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2523 
       30.05        14.04        11.51        24.76        10.39        16.08 
TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 
        7.59         2.86        14.40        15.78         0.20         2.53 
TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 
        9.21         8.35         7.63         8.48         1.22         1.55 
TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 
        2.83         0.13         0.66         7.30         5.26        14.93 
TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 
       11.28        17.88        14.53        11.77        31.27        23.44 
TCGA-28-5218 TCGA-28-5220 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 
        5.16        12.76        15.39        21.07         0.49         0.10 
TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 
       15.85        19.50         1.18         4.67        12.69        14.86 
TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2616 
       16.93        12.23        20.78        15.02        15.95         7.36 
TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 
       22.78        25.18        21.14         3.72        12.59        19.86 
TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 
       10.85        19.23         0.85        13.35         8.94         9.53 
TCGA-41-3392 TCGA-41-3393 TCGA-41-5651 TCGA-41-6646 TCGA-4W-AA9S TCGA-4W-AA9T 
        0.99         4.44        15.12        12.46         4.14        14.76 
TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 
        3.45        20.91         4.34        14.33         8.22         7.50 
TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4935 
        4.80         4.54         3.09         3.65         9.17        10.78 
TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6286 
       16.70         3.29         2.70        11.38        17.06        20.98 
TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 
        4.83         5.03         0.23         9.27         7.73         7.79 
TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 TCGA-OX-A56R TCGA-RR-A6KA TCGA-RR-A6KC 
        1.61        17.72        26.30         5.92         6.28        20.55 
TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 
        4.70         7.69        43.89        18.15        10.62        64.64 
TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 
       40.18         0.10        21.01         9.96         6.38        17.69 
TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6667 TCGA-CS-6669 TCGA-CS-6670 
       23.84        17.95        12.43         7.56         7.40         6.61 
TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5278 
      122.73        81.96        75.25        47.93        72.92        50.17 
TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB 
       44.52        36.56        78.28        46.42        18.84        30.21 
TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH 
       46.72        39.78        37.45        33.57        72.95        31.63 
TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S 
       24.20        25.48        30.12         5.98        31.40        27.45 
TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L 
       27.81        29.23        14.40        18.51        12.10        11.24 
TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 
       17.88        30.74        16.18        19.96        31.82        30.31 
TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F 
       14.40         8.02        30.21        42.05        27.81        17.19 
TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV 
       17.19        54.25        13.12        13.38         3.45        18.61 
TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 
       18.02        14.56        17.46         6.74        13.38         8.45 
TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 
        6.81       182.33        18.94        17.49        15.16       211.17 
TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 
       52.11        22.42        49.02        75.16        46.06        65.75 
TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 
       87.45         7.04        11.64       133.74        19.89        16.83 
TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 
       94.52       114.08         7.96         7.73        11.47        62.96 
TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 
      156.23       138.28        14.99       105.21         6.54         8.84 
TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 
       30.67        26.30        10.36         7.96        94.32        18.94 
TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7306 TCGA-DU-7309 
       44.02        62.01        25.91        60.30        41.98         2.76 
TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 
       23.74        14.60        20.68        21.40        19.13        16.96 
TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT 
       15.48        14.17        14.24        12.59        15.12         4.96 
TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 
        5.65        12.20         8.65         2.70        77.98         7.23 
TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 
        5.98        11.41        26.76         7.13        21.30        17.98 
TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG 
      124.50        77.88        42.31        23.51         7.50        44.42 
TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 
        0.56        50.14        67.46        41.13        79.99        57.93 
TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YO TCGA-E1-A7YV 
      134.27        78.21        95.57       130.78        75.02        32.45 
TCGA-E1-A7YW TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5963 
       36.82        32.35        14.33         0.23         0.20        25.48 
TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 
       34.36        36.82        18.77        14.93        24.99        23.97 
TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 
       18.44        15.35        17.88        22.55        20.61        20.09 
TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 
       12.95        13.68        14.24        16.01        20.09        14.96 
TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX 
       22.52        32.61        38.27        10.72        18.38        18.71 
TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 
       23.70        14.76        17.82        16.41        15.02        16.44 
TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 
       22.26        28.54        10.78        36.66        48.69        20.45 
TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 
       13.58         5.72        27.52         0.10         6.67        11.54 
TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 
       40.11         0.13         0.03         3.75        17.42         6.54 
TCGA-HT-7477 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 
       24.26        40.34        75.19        95.93       106.95       172.77 
TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 
        4.01         5.03        29.85       122.47         4.57        17.29 
TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 
        3.16        22.06        45.99        56.09        57.60         0.23 
TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 
       14.27         0.16        16.24         0.76        44.68         6.05 
TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 
        0.10        31.69        14.96         0.10         0.10         2.96 
TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 
       17.52         6.90        14.53        39.48        19.23        39.09 
TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 
        0.23        50.63         0.49        23.61        37.15         0.33 
TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 
        0.13         3.68         5.33        35.47         3.72        11.28 
TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 
       31.43         1.64        16.24         9.40        63.55         0.10 
TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 
       37.87        33.01        12.23         6.25         0.10         0.46 
TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8563 
        2.50         5.56        13.78         0.23        29.59        28.27 
TCGA-HT-8564 TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA 
       15.72        26.04         0.13        20.22         0.07        27.35 
TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 
        0.10         5.33         2.70        16.93         1.81        16.14 
TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J 
       16.83        21.40        17.52        17.65         2.43        10.52 
TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 
       15.35        11.05         0.10        29.92        19.89         8.32 
TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7493 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 
       19.23        40.18        35.90         4.31        21.70        21.60 
TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM 
       19.59        17.82        20.35        12.76        20.81        20.71 
TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW 
       19.00        42.77        14.40        14.40         0.23         6.71 
TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 
        1.64         2.37         4.11         5.88         7.63         0.76 
TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 
        1.28         0.16        10.42        13.25        11.64         0.20 
TCGA-P5-A731 TCGA-P5-A733 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X 
        9.01        13.61        15.16         2.53        12.62        15.85 
TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX 
       14.04        19.33        14.83        14.53        13.61        12.23 
TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 
        2.20         9.17        10.29        14.53        16.34        16.73 
TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK 
        1.91        16.50         5.03        11.08        12.99        88.83 
TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z 
       94.03        32.65        59.38        30.87         5.46         9.90 
TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU 
       28.08         2.07        19.59        30.67        62.17        87.12 
TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 
       18.77        37.84        34.49        31.33        28.70        22.95 
TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 
       17.62        23.64        32.61        16.08        98.24        95.93 
TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH 
        5.85       106.39        69.50        72.59        80.12        32.45 
TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WN TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ 
       84.99        31.10        15.91        15.16        14.07        36.13 
TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 
        7.92        22.32        23.51         7.13        20.02         8.19 
TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 
        2.04        17.03        15.06        28.37        13.02       169.84 
TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V 
       10.39        99.06        30.05        98.63        31.59        18.71 
TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B 
       11.97        49.45        49.32        34.78        48.39        24.92 
TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J 
       16.18        59.05        40.64        30.44        28.08        24.16 
TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S 
       40.83        24.79        33.24        25.38        18.61        14.93 
TCGA-TM-A84T TCGA-TQ-A7RH TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB 
       23.80        15.98        43.04        30.08        13.51         0.10 
TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS 
        7.89        35.93        23.47        37.05        16.01        23.21 
TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A85A TCGA-WY-A85B 
        8.05        51.06        13.32        43.96        43.40        45.80 
TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       46.88        37.71        20.81 

  AMP PEAK  6(3P25.3) MUTATED AMP PEAK  6(3P25.3) WILD-TYPE 
                         0.20                          0.03 
  AMP PEAK  6(3P25.3) MUTATED AMP PEAK  6(3P25.3) WILD-TYPE 
                       127.59                        211.17 
  AMP PEAK  6(3P25.3) MUTATED AMP PEAK  6(3P25.3) WILD-TYPE 
                       10.815                        14.930 
[1] "0.2 - 127.6 (10.8)" "0.0 - 211.2 (14.9)"
[1] "hr=" "1.4"
D6V2, continuous
D6V3, binary
                               cls
clus                              0   1
  AMP PEAK  6(3P25.3) MUTATED    59  23
  AMP PEAK  6(3P25.3) WILD-TYPE 511 449
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  6(3P25.3) MUTATED     59   23
  AMP PEAK  6(3P25.3) WILD-TYPE  511  449
                        clus
vv                       AMP PEAK  6(3P25.3) MUTATED
  BRAIN                                           59
  CENTRAL NERVOUS SYSTEM                          23
                        clus
vv                       AMP PEAK  6(3P25.3) WILD-TYPE
  BRAIN                                            511
  CENTRAL NERVOUS SYSTEM                           449
[1] 2 2
[1] FALSE
D6V4, binary
                               cls
clus                              0   1
  AMP PEAK  6(3P25.3) MUTATED    43  39
  AMP PEAK  6(3P25.3) WILD-TYPE 387 573
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  6(3P25.3) MUTATED     43   39
  AMP PEAK  6(3P25.3) WILD-TYPE  387  573
        clus
vv       AMP PEAK  6(3P25.3) MUTATED AMP PEAK  6(3P25.3) WILD-TYPE
  FEMALE                          43                           387
  MALE                            39                           573
[1] 2 2
[1] FALSE
D6V5, continuous
                               vv
clus                            ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  AMP PEAK  6(3P25.3) MUTATED            13                             1
  AMP PEAK  6(3P25.3) WILD-TYPE         163                            26
                               vv
clus                            OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  AMP PEAK  6(3P25.3) MUTATED                  3                 7
  AMP PEAK  6(3P25.3) WILD-TYPE              115               171
                               vv
clus                            TREATED PRIMARY GBM
  AMP PEAK  6(3P25.3) MUTATED                     1
  AMP PEAK  6(3P25.3) WILD-TYPE                  17
                               vv
clus                            UNTREATED PRIMARY (DE NOVO) GBM
  AMP PEAK  6(3P25.3) MUTATED                                57
  AMP PEAK  6(3P25.3) WILD-TYPE                             468
D6V6, multiclass
                                 clus
vv                                AMP PEAK  6(3P25.3) MUTATED
  ASTROCYTOMA                                              13
  GLIOBLASTOMA MULTIFORME (GBM)                             1
  OLIGOASTROCYTOMA                                          3
  OLIGODENDROGLIOMA                                         7
  TREATED PRIMARY GBM                                       1
  UNTREATED PRIMARY (DE NOVO) GBM                          57
                                 clus
vv                                AMP PEAK  6(3P25.3) WILD-TYPE
  ASTROCYTOMA                                               163
  GLIOBLASTOMA MULTIFORME (GBM)                              26
  OLIGOASTROCYTOMA                                          115
  OLIGODENDROGLIOMA                                         171
  TREATED PRIMARY GBM                                        17
  UNTREATED PRIMARY (DE NOVO) GBM                           468
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D6V7, binary
                               cls
clus                              0   1
  AMP PEAK  6(3P25.3) MUTATED    45  37
  AMP PEAK  6(3P25.3) WILD-TYPE 429 531
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  6(3P25.3) MUTATED     45   37
  AMP PEAK  6(3P25.3) WILD-TYPE  429  531
     clus
vv    AMP PEAK  6(3P25.3) MUTATED AMP PEAK  6(3P25.3) WILD-TYPE
  NO                           45                           429
  YES                          37                           531
[1] 2 2
[1] FALSE
                               vv
clus                            AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK  6(3P25.3) MUTATED                                  0     1
  AMP PEAK  6(3P25.3) WILD-TYPE                                1    20
                               vv
clus                            BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK  6(3P25.3) MUTATED                           4    73
  AMP PEAK  6(3P25.3) WILD-TYPE                        60   849
D6V8, multiclass
                                  clus
vv                                 AMP PEAK  6(3P25.3) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                           0
  ASIAN                                                      1
  BLACK OR AFRICAN AMERICAN                                  4
  WHITE                                                     73
                                  clus
vv                                 AMP PEAK  6(3P25.3) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                             1
  ASIAN                                                       20
  BLACK OR AFRICAN AMERICAN                                   60
  WHITE                                                      849
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D6V9, binary
                               cls
clus                              0   1
  AMP PEAK  6(3P25.3) MUTATED     3  66
  AMP PEAK  6(3P25.3) WILD-TYPE  27 825
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  6(3P25.3) MUTATED      3   66
  AMP PEAK  6(3P25.3) WILD-TYPE   27  825
                        clus
vv                       AMP PEAK  6(3P25.3) MUTATED
  HISPANIC OR LATINO                               3
  NOT HISPANIC OR LATINO                          66
                        clus
vv                       AMP PEAK  6(3P25.3) WILD-TYPE
  HISPANIC OR LATINO                                27
  NOT HISPANIC OR LATINO                           825
[1] 2 2
[1] FALSE

Clustering(7) Variable = AMP PEAK  7(3Q26.33) MUTATION ANALYSIS
D7V1, survival
                                sevent
clus2                              0   1
  AMP PEAK  7(3Q26.33) MUTATED    29  97
  AMP PEAK  7(3Q26.33) WILD-TYPE 451 462
  AMP PEAK  7(3Q26.33) MUTATED AMP PEAK  7(3Q26.33) WILD-TYPE 
                           126                            913 
  AMP PEAK  7(3Q26.33) MUTATED AMP PEAK  7(3Q26.33) WILD-TYPE 
                            97                            462 
$`AMP PEAK  7(3Q26.33) MUTATED`
TCGA-02-0001 TCGA-02-0009 TCGA-02-0016 TCGA-02-0021 TCGA-02-0047 TCGA-02-0048 
       11.77        10.59        87.06        77.65        14.73         3.22 
TCGA-02-0074 TCGA-02-0106 TCGA-02-0281 TCGA-02-0324 TCGA-02-0325 TCGA-02-0332 
       10.19        11.67         3.98         7.73        10.62        25.71 
TCGA-06-0166 TCGA-06-0188 TCGA-06-0192 TCGA-06-0211 TCGA-06-0237 TCGA-06-0402 
        5.85        44.58        38.96        11.84        13.64         0.26 
TCGA-06-0410 TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 TCGA-06-0648 TCGA-06-0649 
        4.70         3.16        35.11        12.62         9.80         2.10 
TCGA-06-0686 TCGA-06-0743 TCGA-06-0745 TCGA-06-0878 TCGA-06-1087 TCGA-06-2557 
       14.20        26.40         7.86         7.17         4.04         1.08 
TCGA-06-2563 TCGA-06-5408 TCGA-06-5416 TCGA-06-5856 TCGA-06-6389 TCGA-06-6391 
       30.64        11.74         6.71         3.75         7.79         1.48 
TCGA-06-6694 TCGA-06-6695 TCGA-08-0345 TCGA-08-0346 TCGA-08-0353 TCGA-08-0358 
        7.36         8.32         1.74         8.42         8.42        22.29 
TCGA-08-0392 TCGA-08-0510 TCGA-08-0520 TCGA-08-0525 TCGA-12-0615 TCGA-12-0618 
        0.72         4.27        10.75        15.98        15.35        12.99 
TCGA-12-0619 TCGA-12-0657 TCGA-12-0662 TCGA-12-0691 TCGA-12-0776 TCGA-12-0778 
       34.92         0.10        38.17        12.13         9.73        14.93 
TCGA-12-0822 TCGA-12-0827 TCGA-12-0829 TCGA-12-1088 TCGA-12-1090 TCGA-12-1099 
       23.51        38.76        20.58       127.59         7.59         4.14 
TCGA-12-1598 TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 TCGA-14-0736 TCGA-14-0783 
       15.65         6.77        59.77        44.02        15.12         6.21 
TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 TCGA-14-0867 TCGA-14-1451 TCGA-14-1453 
        3.25         1.35         5.39         2.04        23.11         1.15 
TCGA-14-1794 TCGA-14-1825 TCGA-14-1829 TCGA-14-3477 TCGA-15-1449 TCGA-19-0963 
        0.99         7.63         7.17         3.78        13.28        14.27 
TCGA-19-1388 TCGA-19-1392 TCGA-19-2629 TCGA-19-4065 TCGA-26-1440 TCGA-26-6174 
       12.95         3.65        24.23         7.04         9.73         2.33 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1834 TCGA-27-1835 TCGA-27-2521 TCGA-28-1752 
        5.06        16.60        40.54        21.30        10.39         8.48 
TCGA-28-2506 TCGA-28-2509 TCGA-28-5207 TCGA-28-5213 TCGA-28-5215 TCGA-28-5216 
        6.74         4.77        11.28        31.27        11.01        13.64 
TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1991 TCGA-32-2632 TCGA-41-2575 
       22.68        12.76         5.42        16.93         8.84         9.53 
TCGA-41-3915 TCGA-41-4097 TCGA-74-6577 TCGA-74-6584 TCGA-76-4934 TCGA-76-6285 
       11.84         0.20         4.34         7.50         2.53         8.35 
TCGA-CS-5395 TCGA-DU-6397 TCGA-DU-6400 TCGA-DU-7013 TCGA-DU-8158 TCGA-DU-A5TW 
       21.01        46.06         1.22         8.84         5.10         5.65 
TCGA-E1-5304 TCGA-FG-5962 TCGA-FG-7636 TCGA-FG-A6J3 TCGA-HT-7606 TCGA-HT-7676 
       41.13        47.77        17.88        22.26        17.29         0.16 
TCGA-HT-A4DS TCGA-HT-A5RA TCGA-QH-A870 TCGA-S9-A6WM TCGA-TM-A84B TCGA-VW-A8FI 
        0.23        27.35        12.99        19.86        24.92         8.05 

$`AMP PEAK  7(3Q26.33) WILD-TYPE`
TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0010 TCGA-02-0011 TCGA-02-0014 
        4.73        18.35        23.18        35.41        20.71        82.59 
TCGA-02-0015 TCGA-02-0023 TCGA-02-0024 TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 
       20.61        20.12        53.10        42.74        24.59        12.16 
TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 
       90.58         2.83        14.14         3.62        10.72        10.52 
TCGA-02-0043 TCGA-02-0046 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 
       18.31         6.87        15.09        12.59         6.54         2.50 
TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 
       19.86         8.35         9.57         6.02        19.73        26.43 
TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 
       28.70        25.05         5.49        20.84        27.25        89.72 
TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 
       22.72        12.62        51.32         8.81        57.76        16.96 
TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 
        3.48        27.02        65.00        17.65        23.18        92.65 
TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 
       99.98        15.65        48.95        16.54        16.93        17.72 
TCGA-02-0269 TCGA-02-0271 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 
       10.75        14.47        13.87        14.20        15.95        12.23 
TCGA-02-0321 TCGA-02-0326 TCGA-02-0330 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 
        9.90         7.33        15.91         4.37        25.12        10.59 
TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 
       12.39        14.50        10.55        47.11        11.34         9.27 
TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 
       16.21         3.35        16.80        12.92        15.32        15.45 
TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 
       20.32         2.70         6.15        20.38        47.61         6.94 
TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 
        3.98        22.72        33.67        12.95        25.35        14.30 
TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 
       26.70        24.23        11.90         0.20        10.29         2.20 
TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 
       11.74         2.33        20.09        17.79        10.09         8.61 
TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 
       19.46        46.59        12.33        13.94        10.45         3.19 
TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 
       10.82         9.44        11.80         3.42        56.91        10.65 
TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 
       19.66         3.29        13.12         4.47         3.22         4.04 
TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 
       91.00         4.18        88.14        20.25         3.65        69.90 
TCGA-06-0185 TCGA-06-0187 TCGA-06-0189 TCGA-06-0190 TCGA-06-0194 TCGA-06-0195 
       73.84        27.22        15.42        10.42         4.67         7.40 
TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 
        5.56         0.39         7.66         8.42         7.63         7.40 
TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 TCGA-06-0238 
        0.53        15.02        24.16         0.72        19.82        13.32 
TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0409 TCGA-06-0412 
       20.42        48.69        10.82         9.01        72.36         9.57 
TCGA-06-0645 TCGA-06-0646 TCGA-06-0650 TCGA-06-0744 TCGA-06-0747 TCGA-06-0749 
        5.75         5.75        23.57        46.88         2.70         2.70 
TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0879 TCGA-06-0881 
        0.92        43.46        46.19         5.65        40.41        16.57 
TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1800 TCGA-06-1801 
       20.78        26.76        23.93         6.84        26.79        11.84 
TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-1806 TCGA-06-2558 TCGA-06-2559 
       15.32        13.61        33.90        15.32        12.49         4.93 
TCGA-06-2561 TCGA-06-2562 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 
       17.65        12.56         5.95        16.64         5.98         4.37 
TCGA-06-2569 TCGA-06-2570 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
        0.43        31.50         3.55         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5418 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 
        8.98         8.55         2.73         6.15         4.57         5.23 
TCGA-06-6390 TCGA-06-6693 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        5.39       120.56        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-06-A5U0 TCGA-06-A5U1 TCGA-06-A6S0 TCGA-06-A6S1 TCGA-06-A7TK 
        4.96         4.70         1.87         3.12         2.56         5.39 
TCGA-06-A7TL TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 TCGA-08-0344 TCGA-08-0347 
        5.42        22.68        37.84         4.18       115.86        25.71 
TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0354 
       12.16         9.80        29.23        65.33         1.28        17.95 
TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 
       24.56        31.10        37.58         3.39        12.23        14.93 
TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 TCGA-08-0509 TCGA-08-0512 TCGA-08-0514 
       18.02        15.35        13.97        12.56        42.15        11.08 
TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 TCGA-08-0521 TCGA-08-0524 TCGA-08-0529 
       19.59        58.68        19.33         4.80         7.27        18.41 
TCGA-08-0531 TCGA-12-0616 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 TCGA-12-0670 
        7.56        14.73        10.45         7.59        94.78        25.97 
TCGA-12-0688 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 
       26.66         3.65        20.38        28.41        15.06        53.85 
TCGA-12-0773 TCGA-12-0775 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 
       43.23         7.63        14.86        91.76        24.79        18.48 
TCGA-12-0821 TCGA-12-0826 TCGA-12-0828 TCGA-12-1089 TCGA-12-1091 TCGA-12-1092 
       10.62        27.78         8.94         5.82        33.21        21.73 
TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 
       15.98        12.23        15.85         9.11        14.53         3.98 
TCGA-12-1599 TCGA-12-1600 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 
       25.68        14.73        26.93        15.22        10.95        12.69 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 
       34.92        14.53        14.93         3.22         2.04        11.97 
TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0862 
        0.95        23.05         2.24        11.24        13.78         2.89 
TCGA-14-0865 TCGA-14-0866 TCGA-14-0871 TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 
       16.50        26.33        28.93        15.95        19.30         0.79 
TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1452 
        1.38         1.12         3.75        32.05        58.78         7.10 
TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1795 
       30.18         0.92        40.96         6.67        12.43         1.97 
TCGA-14-1821 TCGA-14-1823 TCGA-14-1827 TCGA-14-2554 TCGA-14-2555 TCGA-14-4157 
       17.79        17.85         5.88        17.49         7.96         3.42 
TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 TCGA-15-1447 TCGA-16-0846 TCGA-16-0848 
       13.78        50.53        19.10        53.19         3.91        17.59 
TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 
       26.07        16.37         4.31        29.03         4.57        10.29 
TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 
       14.01         9.14        21.24        13.97         6.41        11.77 
TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 
       21.90         8.61         0.66         3.39        10.75         9.07 
TCGA-19-1387 TCGA-19-1389 TCGA-19-1390 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 
        5.95         4.64        25.38         7.17        12.66         3.25 
TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 
        0.13         9.67         4.87         1.08         7.53         0.16 
TCGA-19-2625 TCGA-19-2631 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 
        4.08         7.00         6.64        17.19         8.02        18.90 
TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 
        4.73        12.10         1.78        22.49        14.07        16.80 
TCGA-19-5960 TCGA-19-A60I TCGA-19-A6J4 TCGA-19-A6J5 TCGA-26-1438 TCGA-26-1439 
       14.96        17.79         3.98        28.54        10.03        13.87 
TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 
       31.33         7.13         9.37         9.40        14.86         5.49 
TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-A7UX TCGA-27-1832 
        8.88        18.97         1.58         7.92        19.33         9.86 
TCGA-27-1833 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 
       24.23        30.05        14.04        11.51        24.76        10.39 
TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 
       16.08         7.59         2.86        14.40        15.78         0.20 
TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1753 TCGA-28-1755 
        2.53         9.21         8.35         7.63         1.22         1.55 
TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 
        2.83         0.13         0.66         7.30         5.26        14.93 
TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5214 TCGA-28-5218 TCGA-32-1970 
       17.88        14.53        11.77        23.44         5.16        15.39 
TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 
       21.07         0.49         0.10        15.85        19.50         1.18 
TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 
        4.67        12.69        14.86        12.23        20.78        15.02 
TCGA-32-2615 TCGA-32-2616 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4210 
       15.95         7.36        22.78        25.18        21.14         3.72 
TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 
       12.59        19.86        10.85        19.23         0.85        13.35 
TCGA-41-2573 TCGA-41-3392 TCGA-41-3393 TCGA-41-5651 TCGA-41-6646 TCGA-4W-AA9S 
        8.94         0.99         4.44        15.12        12.46         4.14 
TCGA-4W-AA9T TCGA-74-6573 TCGA-74-6575 TCGA-74-6578 TCGA-74-6581 TCGA-76-4925 
       14.76         3.45        20.91        14.33         8.22         4.80 
TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4935 TCGA-76-6191 
        4.54         3.09         3.65         9.17        10.78        16.70 
TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6286 TCGA-76-6656 
        3.29         2.70        11.38        17.06        20.98         4.83 
TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 
        5.03         0.23         9.27         7.73         7.79         1.61 
TCGA-81-5911 TCGA-87-5896 TCGA-OX-A56R TCGA-RR-A6KA TCGA-RR-A6KC TCGA-CS-4938 
       17.72        26.30         5.92         6.28        20.55         4.70 
TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 
        7.69        43.89        18.15        10.62        64.64        40.18 
TCGA-CS-5394 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 
        0.10         9.96         6.38        17.69        23.84        17.95 
TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 
       12.43         8.48         7.56         8.02         7.40         6.61 
TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 
      122.73        81.96        75.25        47.93        72.92        50.86 
TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA 
       50.17        44.52        36.56        78.28        46.42        18.84 
TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG 
       30.21        46.72        39.78        37.45        33.57        72.95 
TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R 
       31.63        24.20        25.48        30.12         5.98        31.40 
TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K 
       27.45        27.81        29.23        14.40        18.51        12.10 
TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 
       11.24        17.88        30.74        16.18        19.96        31.82 
TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D 
       30.31        14.40         8.02        30.21        42.05        27.81 
TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU 
       17.19        17.19        54.25        13.12        13.38         3.45 
TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 
       18.61        18.02        14.56        17.46         6.74        13.38 
TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 
        8.45         6.81       182.33        18.94        17.49        15.16 
TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6399 
      211.17        52.11        22.42        49.02        75.16        65.75 
TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 
       87.45         7.04        11.64       133.74        19.89        16.83 
TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 
       94.52       114.08         7.96         7.73        11.47        62.96 
TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7014 
      156.23       138.28        14.99       105.21         6.54       117.40 
TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 
       90.77        30.67        26.30        10.36         7.96        94.32 
TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 
       18.94        44.02        62.01        25.91        60.30        23.31 
TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 
       41.98         2.76        23.74        14.60        20.68        21.40 
TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR 
       19.13        16.96        15.48        14.17        14.24        12.59 
TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 
       15.12         4.96         3.65        12.20         8.65         2.70 
TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O 
       77.98         7.23         5.98        11.41        26.76         7.13 
TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC 
       21.30        17.98       124.50        77.88        42.31        23.51 
TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5305 
        7.50        44.42         0.56        50.14        67.46        79.99 
TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YO 
       57.93       134.27        78.21        95.57       130.78        75.02 
TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 
       32.45        36.82        32.35        14.33         0.23         0.20 
TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 
       25.48        34.36        36.82        18.77        14.93        24.99 
TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 
       23.97        18.44        15.35        22.55        20.61        20.09 
TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 
       12.95        13.68        14.24        16.01        20.09        14.96 
TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX 
       22.52        32.61        38.27        10.72        18.38        18.71 
TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 
       23.70        14.76        17.82        16.41        15.02        16.44 
TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N 
       28.54        10.78        36.66        48.69        20.45        13.58 
TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 
        5.72        27.52         0.10         6.67        11.54        40.11 
TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 
        0.13         0.03        16.54         3.75        17.42         6.54 
TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 
       24.26         6.38        40.34        75.19        95.93       106.95 
TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 
      172.77         4.01         5.03        29.85        23.18       122.47 
TCGA-HT-7605 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 
        4.57         3.16        22.06        45.99        56.09        57.60 
TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 
        0.23        14.27        16.24         0.76        44.68         6.05 
TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 
       42.74         0.10        31.69        14.96         0.10         0.10 
TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 
        2.96        17.52         6.90        14.53        39.48        19.23 
TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 
       39.09         0.23        50.63         0.49        23.61        37.15 
TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 
        0.33         0.13         3.68         5.33        35.47         3.72 
TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 
       11.28        31.43         1.64        16.24         9.40        63.55 
TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 
        0.10        37.87        33.01        12.23         6.25         0.10 
TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 
        0.46         2.50         5.56        13.78         0.23        29.59 
TCGA-HT-8114 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 
       34.19        28.27        15.72        26.04         0.13        20.22 
TCGA-HT-A5R9 TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 
        0.07         0.10         5.33         2.70        16.93         1.81 
TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H 
       16.14        16.83        21.40        17.52        17.65         2.43 
TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 
       10.52        15.35        11.05         0.10        29.92        19.89 
TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7493 TCGA-HW-7495 TCGA-HW-8319 
        8.32        19.23        40.18        35.90         4.31        21.70 
TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL 
       21.60        19.59        17.82        20.35        12.76        20.81 
TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV 
       20.71        19.00        42.77        14.40        14.40         0.23 
TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 
        6.71         1.64         2.37         2.30         4.11         5.88 
TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X 
        7.63         0.76         1.28         0.16        10.42        13.25 
TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-QH-A65R TCGA-QH-A65S 
       11.64         0.20         9.01        13.61        15.16         2.53 
TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV 
       12.62        15.85        14.04        19.33        14.83        14.53 
TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 
       13.61        12.23         2.20         9.17        10.29        14.53 
TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X 
       16.34        16.73         1.91        16.50         5.03        11.08 
TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y 
       88.83        94.03        32.65        59.38        30.87         5.46 
TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS 
        9.90        28.08         2.07        19.59        30.67        62.17 
TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ 
       87.12        18.77        37.84        34.49        31.33        28.70 
TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 
       22.95        17.62        23.64        32.61        16.08        98.24 
TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG 
       95.93         5.85       106.39        69.50        72.59        80.12 
TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP 
       32.45        84.99        31.10        15.91        18.61        15.16 
TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ 
       14.07        36.13         7.92        22.32        23.51         7.13 
TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX 
       20.02         8.19         2.04        17.03        15.06        13.12 
TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 
       28.37        13.02       169.84        10.39        99.06        30.05 
TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 
       98.63        31.59        18.71        11.97        49.45        48.33 
TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G 
       49.32        34.78        48.39        16.18        59.05        40.64 
TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O 
       30.44        28.08        24.16        40.83        24.79        33.24 
TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RH TCGA-TQ-A7RW 
       25.38        18.61        14.93        23.80        15.98        26.99 
TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE 
       43.04        30.08        13.51         0.10         7.89        35.93 
TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-W9-A837 TCGA-WH-A86K 
       23.47        37.05        16.01        23.21        51.06        13.32 
TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D 
       43.96        39.88        43.40        45.80        46.88        37.71 
TCGA-WY-A85E 
       20.81 

  AMP PEAK  7(3Q26.33) MUTATED AMP PEAK  7(3Q26.33) WILD-TYPE 
                          0.10                           0.03 
  AMP PEAK  7(3Q26.33) MUTATED AMP PEAK  7(3Q26.33) WILD-TYPE 
                        127.59                         211.17 
  AMP PEAK  7(3Q26.33) MUTATED AMP PEAK  7(3Q26.33) WILD-TYPE 
                         10.29                          15.16 
[1] "0.1 - 127.6 (10.3)" "0.0 - 211.2 (15.2)"
[1] "hr=" "2.2"
D7V2, continuous
D7V3, binary
                                cls
clus                               0   1
  AMP PEAK  7(3Q26.33) MUTATED   108  19
  AMP PEAK  7(3Q26.33) WILD-TYPE 462 453
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  7(3Q26.33) MUTATED    108   19
  AMP PEAK  7(3Q26.33) WILD-TYPE  462  453
                        clus
vv                       AMP PEAK  7(3Q26.33) MUTATED
  BRAIN                                           108
  CENTRAL NERVOUS SYSTEM                           19
                        clus
vv                       AMP PEAK  7(3Q26.33) WILD-TYPE
  BRAIN                                             462
  CENTRAL NERVOUS SYSTEM                            453
[1] 2 2
[1] FALSE
D7V4, binary
                                cls
clus                               0   1
  AMP PEAK  7(3Q26.33) MUTATED    49  78
  AMP PEAK  7(3Q26.33) WILD-TYPE 381 534
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  7(3Q26.33) MUTATED     49   78
  AMP PEAK  7(3Q26.33) WILD-TYPE  381  534
        clus
vv       AMP PEAK  7(3Q26.33) MUTATED AMP PEAK  7(3Q26.33) WILD-TYPE
  FEMALE                           49                            381
  MALE                             78                            534
[1] 2 2
[1] FALSE
D7V5, continuous
                                vv
clus                             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  AMP PEAK  7(3Q26.33) MUTATED            13                             0
  AMP PEAK  7(3Q26.33) WILD-TYPE         163                            27
                                vv
clus                             OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  AMP PEAK  7(3Q26.33) MUTATED                  1                 5
  AMP PEAK  7(3Q26.33) WILD-TYPE              117               173
                                vv
clus                             TREATED PRIMARY GBM
  AMP PEAK  7(3Q26.33) MUTATED                     0
  AMP PEAK  7(3Q26.33) WILD-TYPE                  18
                                vv
clus                             UNTREATED PRIMARY (DE NOVO) GBM
  AMP PEAK  7(3Q26.33) MUTATED                               108
  AMP PEAK  7(3Q26.33) WILD-TYPE                             417
D7V6, multiclass
                                 clus
vv                                AMP PEAK  7(3Q26.33) MUTATED
  ASTROCYTOMA                                               13
  GLIOBLASTOMA MULTIFORME (GBM)                              0
  OLIGOASTROCYTOMA                                           1
  OLIGODENDROGLIOMA                                          5
  TREATED PRIMARY GBM                                        0
  UNTREATED PRIMARY (DE NOVO) GBM                          108
                                 clus
vv                                AMP PEAK  7(3Q26.33) WILD-TYPE
  ASTROCYTOMA                                                163
  GLIOBLASTOMA MULTIFORME (GBM)                               27
  OLIGOASTROCYTOMA                                           117
  OLIGODENDROGLIOMA                                          173
  TREATED PRIMARY GBM                                         18
  UNTREATED PRIMARY (DE NOVO) GBM                            417
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D7V7, binary
                                cls
clus                               0   1
  AMP PEAK  7(3Q26.33) MUTATED    79  48
  AMP PEAK  7(3Q26.33) WILD-TYPE 395 520
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  7(3Q26.33) MUTATED     79   48
  AMP PEAK  7(3Q26.33) WILD-TYPE  395  520
     clus
vv    AMP PEAK  7(3Q26.33) MUTATED AMP PEAK  7(3Q26.33) WILD-TYPE
  NO                            79                            395
  YES                           48                            520
[1] 2 2
[1] FALSE
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK  7(3Q26.33) MUTATED                                  0     0
  AMP PEAK  7(3Q26.33) WILD-TYPE                                1    21
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK  7(3Q26.33) MUTATED                           9   110
  AMP PEAK  7(3Q26.33) WILD-TYPE                        55   812
D7V8, multiclass
                                  clus
vv                                 AMP PEAK  7(3Q26.33) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            0
  ASIAN                                                       0
  BLACK OR AFRICAN AMERICAN                                   9
  WHITE                                                     110
                                  clus
vv                                 AMP PEAK  7(3Q26.33) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              1
  ASIAN                                                        21
  BLACK OR AFRICAN AMERICAN                                    55
  WHITE                                                       812
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D7V9, binary
                                cls
clus                               0   1
  AMP PEAK  7(3Q26.33) MUTATED     1 100
  AMP PEAK  7(3Q26.33) WILD-TYPE  29 791
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  7(3Q26.33) MUTATED      1  100
  AMP PEAK  7(3Q26.33) WILD-TYPE   29  791
                        clus
vv                       AMP PEAK  7(3Q26.33) MUTATED
  HISPANIC OR LATINO                                1
  NOT HISPANIC OR LATINO                          100
                        clus
vv                       AMP PEAK  7(3Q26.33) WILD-TYPE
  HISPANIC OR LATINO                                 29
  NOT HISPANIC OR LATINO                            791
[1] 2 2
[1] FALSE

Clustering(8) Variable = AMP PEAK  8(4P16.3) MUTATION ANALYSIS
D8V1, survival
                               sevent
clus2                             0   1
  AMP PEAK  8(4P16.3) MUTATED    22  47
  AMP PEAK  8(4P16.3) WILD-TYPE 458 512
  AMP PEAK  8(4P16.3) MUTATED AMP PEAK  8(4P16.3) WILD-TYPE 
                           69                           970 
  AMP PEAK  8(4P16.3) MUTATED AMP PEAK  8(4P16.3) WILD-TYPE 
                           47                           512 
$`AMP PEAK  8(4P16.3) MUTATED`
TCGA-02-0011 TCGA-02-0021 TCGA-02-0055 TCGA-02-0074 TCGA-02-0075 TCGA-02-0086 
       20.71        77.65         2.50        10.19        20.84         8.81 
TCGA-02-0113 TCGA-06-0125 TCGA-06-0130 TCGA-06-0157 TCGA-06-0195 TCGA-06-0409 
       92.65        47.61        12.95         3.19         7.40        72.36 
TCGA-06-0410 TCGA-06-0744 TCGA-06-0879 TCGA-06-6388 TCGA-06-6697 TCGA-08-0246 
        4.70        46.88        40.41         5.23        12.85         4.18 
TCGA-08-0510 TCGA-08-0531 TCGA-12-0616 TCGA-12-0691 TCGA-12-0820 TCGA-12-0826 
        4.27         7.56        14.73        12.13        18.48        27.78 
TCGA-12-3650 TCGA-14-1795 TCGA-14-1821 TCGA-14-2554 TCGA-14-3477 TCGA-16-0846 
       10.95         1.97        17.79        17.49         3.78         3.91 
TCGA-16-1056 TCGA-19-1387 TCGA-19-1392 TCGA-19-5947 TCGA-19-5958 TCGA-19-A6J4 
       14.01         5.95         3.65         6.64        14.07         3.98 
TCGA-26-1439 TCGA-27-1835 TCGA-27-2521 TCGA-28-2506 TCGA-28-5215 TCGA-32-1982 
       13.87        21.30        10.39         6.74        11.01         4.67 
TCGA-32-1991 TCGA-41-2575 TCGA-41-3915 TCGA-41-4097 TCGA-74-6578 TCGA-76-4925 
       16.93         9.53        11.84         0.20        14.33         4.80 
TCGA-CS-6186 TCGA-CS-6665 TCGA-CS-6666 TCGA-DB-5277 TCGA-DU-6407 TCGA-DU-7010 
       17.69        12.43         8.48        50.86        94.52        14.99 
TCGA-DU-A5TS TCGA-DU-A5TT TCGA-FG-7643 TCGA-FG-A4MY TCGA-FG-A87Q TCGA-HT-7477 
       15.12         4.96        20.09        23.70         5.72        24.26 
TCGA-HT-7688 TCGA-P5-A5EZ TCGA-S9-A6TU TCGA-S9-A6WM TCGA-S9-A7IZ TCGA-S9-A7J0 
       31.69         2.30        87.12        19.86         7.13        20.02 
TCGA-S9-A7J2 TCGA-TM-A84B TCGA-VM-A8CD 
        2.04        24.92         7.89 

$`AMP PEAK  8(4P16.3) WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
       11.77         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0023 TCGA-02-0024 TCGA-02-0025 
       82.59        20.61        87.06        20.12        53.10        42.74 
TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 
       24.59        12.16        90.58         2.83        14.14         3.62 
TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 
       10.72        10.52        18.31         6.87        14.73         3.22 
TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 
       15.09        12.59         6.54        19.86         8.35         9.57 
TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 
        6.02        19.73        26.43        28.70        25.05         5.49 
TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0087 
       27.25        89.72        22.72        12.62        51.32        57.76 
TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 
       16.96         3.48        27.02        65.00        11.67        17.65 
TCGA-02-0111 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 
       23.18        99.98        15.65        48.95        16.54        16.93 
TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 
       17.72        10.75        14.47         3.98        13.87        14.20 
TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 
       15.95        12.23         9.90         7.73        10.62         7.33 
TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 
       15.91        25.71         4.37        25.12        10.59        12.39 
TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 
       14.50        10.55        47.11        11.34         9.27        16.21 
TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 
        3.35        16.80        12.92        15.32        15.45        20.32 
TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 
        2.70         6.15        20.38         6.94         3.98        22.72 
TCGA-06-0129 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 
       33.67        25.35        14.30        26.70        24.23        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 
        0.20        10.29         2.20        11.74         2.33        20.09 
TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 
       17.79        10.09         8.61        19.46        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 
       13.94        10.45        10.82         9.44        11.80         3.42 
TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 
       56.91        10.65         5.85        19.66         3.29        13.12 
TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 
        4.47         3.22         4.04        91.00         4.18        88.14 
TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 
       20.25         3.65        69.90        73.84        27.22        44.58 
TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0197 TCGA-06-0201 
       15.42        10.42        38.96         4.67         5.56         0.39 
TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 
        7.66         8.42         7.63         7.40        11.84         0.53 
TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 
       15.02        24.16         0.72        19.82        13.64        13.32 
TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0412 
       20.42        48.69        10.82         9.01         0.26         9.57 
TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 
        3.16        35.11        12.62         5.75         5.75         9.80 
TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0745 TCGA-06-0747 
        2.10        23.57        14.20        26.40         7.86         2.70 
TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 
        2.70         0.92        43.46        46.19         5.65         7.17 
TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1087 
       16.57        20.78        26.76        23.93         6.84         4.04 
TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-1806 
       26.79        11.84        15.32        13.61        33.90        15.32 
TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 
        1.08        12.49         4.93        17.65        12.56        30.64 
TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 
        5.95        16.64         5.98         4.37         0.43        31.50 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 
       11.74         3.55         8.35         4.54         8.81         8.98 
TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 
        8.55         6.71         2.73         3.75         6.15         4.57 
TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 
        7.79         5.39         1.48       120.56         7.36         8.32 
TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-06-A5U0 TCGA-06-A5U1 
        4.77         1.55         4.77         4.96         4.70         1.87 
TCGA-06-A6S0 TCGA-06-A6S1 TCGA-06-A7TK TCGA-06-A7TL TCGA-08-0244 TCGA-08-0245 
        3.12         2.56         5.39         5.42        22.68        37.84 
TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 
      115.86         1.74         8.42        25.71        12.16         9.80 
TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 
       29.23        65.33         1.28         8.42        17.95        24.56 
TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 
       31.10        37.58        22.29         3.39        12.23        14.93 
TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0512 
       18.02        15.35        13.97         0.72        12.56        42.15 
TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 
       11.08        19.59        58.68        19.33        10.75         4.80 
TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-12-0615 TCGA-12-0618 TCGA-12-0619 
        7.27        15.98        18.41        15.35        12.99        34.92 
TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 
       10.45         7.59        94.78         0.10        38.17        25.97 
TCGA-12-0688 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 
       26.66         3.65        20.38        28.41        15.06        53.85 
TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 
       43.23         7.63         9.73        14.93        14.86        91.76 
TCGA-12-0819 TCGA-12-0821 TCGA-12-0822 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 
       24.79        10.62        23.51        38.76         8.94        20.58 
TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 
      127.59         5.82         7.59        33.21        21.73        15.98 
TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 
       12.23        15.85         9.11        14.53         3.98         4.14 
TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 
       15.65        25.68        14.73         6.77        59.77        44.02 
TCGA-12-3648 TCGA-12-3649 TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 
       26.93        15.22        12.69        34.92        14.53        14.93 
TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 
        3.22         2.04        15.12        11.97         0.95         6.21 
TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 
       23.05         2.24        11.24        13.78         3.25         1.35 
TCGA-14-0817 TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 TCGA-14-0867 TCGA-14-0871 
        5.39         2.89        16.50        26.33         2.04        28.93 
TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 
       15.95        19.30         0.79         1.38         1.12         3.75 
TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 
       32.05        58.78        23.11         7.10         1.15        30.18 
TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 TCGA-14-1823 
        0.92        40.96         6.67        12.43         0.99        17.85 
TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2555 TCGA-14-4157 TCGA-15-0742 
        7.63         5.88         7.17         7.96         3.42        13.78 
TCGA-15-1444 TCGA-15-1446 TCGA-15-1447 TCGA-15-1449 TCGA-16-0848 TCGA-16-0849 
       50.53        19.10        53.19        13.28        17.59        26.07 
TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1060 
       16.37         4.31        29.03         4.57        10.29         9.14 
TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 
       21.24        13.97         6.41        11.77        21.90         8.61 
TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 TCGA-19-1388 
        0.66        14.27         3.39        10.75         9.07        12.95 
TCGA-19-1389 TCGA-19-1390 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 
        4.64        25.38         7.17        12.66         3.25         0.13 
TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 
        9.67         4.87         1.08         7.53         0.16         4.08 
TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 
       24.23         7.00         7.04        17.19         8.02        18.90 
TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5959 TCGA-19-5960 
        4.73        12.10         1.78        22.49        16.80        14.96 
TCGA-19-A60I TCGA-19-A6J5 TCGA-26-1438 TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 
       17.79        28.54        10.03         9.73        31.33         7.13 
TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 
        9.37         9.40        14.86         5.49         8.88        18.97 
TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-26-A7UX TCGA-27-1830 TCGA-27-1831 
        1.58         7.92         2.33        19.33         5.06        16.60 
TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 
        9.86        24.23        40.54        30.05        14.04        11.51 
TCGA-27-2518 TCGA-27-2519 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 
       24.76        10.39        16.08         7.59         2.86        14.40 
TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 
       15.78         0.20         2.53         9.21         8.35         7.63 
TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 
        8.48         1.22         1.55         2.83         0.13         0.66 
TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 
        4.77         7.30         5.26        14.93        11.28        17.88 
TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5216 TCGA-28-5218 
       14.53        11.77        31.27        23.44        13.64         5.16 
TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 
       22.68        12.76         5.42        15.39        21.07         0.49 
TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1986 TCGA-32-1987 
        0.10        15.85        19.50         1.18        12.69        14.86 
TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2616 TCGA-32-2632 
       12.23        20.78        15.02        15.95         7.36         8.84 
TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 
       22.78        25.18        21.14         3.72        12.59        19.86 
TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-3392 
       10.85        19.23         0.85        13.35         8.94         0.99 
TCGA-41-3393 TCGA-41-5651 TCGA-41-6646 TCGA-4W-AA9S TCGA-4W-AA9T TCGA-74-6573 
        4.44        15.12        12.46         4.14        14.76         3.45 
TCGA-74-6575 TCGA-74-6577 TCGA-74-6581 TCGA-74-6584 TCGA-76-4926 TCGA-76-4928 
       20.91         4.34         8.22         7.50         4.54         3.09 
TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 
        3.65         9.17         2.53        10.78        16.70         3.29 
TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 
        2.70        11.38        17.06         8.35        20.98         4.83 
TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 
        5.03         0.23         9.27         7.73         7.79         1.61 
TCGA-81-5911 TCGA-87-5896 TCGA-OX-A56R TCGA-RR-A6KA TCGA-RR-A6KC TCGA-CS-4938 
       17.72        26.30         5.92         6.28        20.55         4.70 
TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 
        7.69        43.89        18.15        10.62        64.64        40.18 
TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6188 TCGA-CS-6290 
        0.10        21.01         9.96         6.38        23.84        17.95 
TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 
        7.56         8.02         7.40         6.61       122.73        81.96 
TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 
       75.25        47.93        72.92        50.17        44.52        36.56 
TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD 
       78.28        46.42        18.84        30.21        46.72        39.78 
TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O 
       37.45        33.57        72.95        31.63        24.20        25.48 
TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V 
       30.12         5.98        31.40        27.45        27.81        29.23 
TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O 
       14.40        18.51        12.10        11.24        17.88        30.74 
TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 
       16.18        19.96        31.82        30.31        14.40         8.02 
TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR 
       30.21        42.05        27.81        17.19        17.19        54.25 
TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 
       13.12        13.38         3.45        18.61        18.02        14.56 
TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 
       17.46         6.74        13.38         8.45         6.81       182.33 
TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 
       18.94        17.49        15.16       211.17        52.11        22.42 
TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 
       49.02        75.16        46.06        65.75         1.22        87.45 
TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6408 
        7.04        11.64       133.74        19.89        16.83       114.08 
TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 
        7.96         7.73        11.47        62.96       156.23       138.28 
TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7014 TCGA-DU-7015 TCGA-DU-7018 
      105.21         6.54         8.84       117.40        90.77        30.67 
TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 
       26.30        10.36         7.96        94.32        18.94        44.02 
TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 
       62.01        25.91        60.30        23.31        41.98         2.76 
TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 
        5.10        23.74        14.60        20.68        21.40        19.13 
TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TU 
       16.96        15.48        14.17        14.24        12.59         3.65 
TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 
        5.65        12.20         8.65         2.70        77.98         7.23 
TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 
        5.98        11.41        26.76         7.13        21.30        17.98 
TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG 
      124.50        77.88        42.31        23.51         7.50        44.42 
TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 
        0.56        50.14        67.46        41.13        79.99        57.93 
TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YO TCGA-E1-A7YV 
      134.27        78.21        95.57       130.78        75.02        32.45 
TCGA-E1-A7YW TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 
       36.82        32.35        14.33         0.23         0.20        47.77 
TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 
       25.48        34.36        36.82        18.77        14.93        24.99 
TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7638 TCGA-FG-7641 
       23.97        18.44        15.35        17.88        22.55        20.61 
TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 
       12.95        13.68        14.24        16.01        20.09        14.96 
TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX 
       22.52        32.61        38.27        10.72        18.38        18.71 
TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 
       14.76        17.82        16.41        15.02        16.44        22.26 
TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N 
       28.54        10.78        36.66        48.69        20.45        13.58 
TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 
       27.52         0.10         6.67        11.54        40.11         0.13 
TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7478 
        0.03        16.54         3.75        17.42         6.54         6.38 
TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 
       40.34        75.19        95.93       106.95       172.77         4.01 
TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 
        5.03        29.85        23.18       122.47         4.57        17.29 
TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 
        3.16        22.06        45.99        56.09        57.60         0.23 
TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 
       14.27         0.16        16.24         0.76        44.68         6.05 
TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 
       42.74         0.10        14.96         0.10         0.10         2.96 
TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 
       17.52         6.90        14.53        39.48        19.23        39.09 
TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 
        0.23        50.63         0.49        23.61        37.15         0.33 
TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 
        0.13         3.68         5.33        35.47         3.72        11.28 
TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 
       31.43         1.64        16.24         9.40        63.55         0.10 
TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 
       37.87        33.01        12.23         6.25         0.10         0.46 
TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 
        2.50         5.56        13.78         0.23        29.59        34.19 
TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 
       28.27        15.72         0.23        26.04         0.13        20.22 
TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 
        0.07        27.35         0.10         5.33         2.70        16.93 
TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61B TCGA-HT-A61C 
        1.81        16.14        16.83        21.40        17.52        17.65 
TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 
        2.43        10.52        15.35        11.05         0.10        29.92 
TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7493 TCGA-HW-7495 
       19.89         8.32        19.23        40.18        35.90         4.31 
TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK 
       21.70        21.60        19.59        17.82        20.35        12.76 
TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 
       20.81        20.71        19.00        42.77        14.40        14.40 
TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5F0 TCGA-P5-A5F1 
        0.23         6.71         1.64         2.37         4.11         5.88 
TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X 
        7.63         0.76         1.28         0.16        10.42        13.25 
TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-QH-A65R TCGA-QH-A65S 
       11.64         0.20         9.01        13.61        15.16         2.53 
TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV 
       12.62        15.85        14.04        19.33        14.83        14.53 
TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 
       13.61        12.23         2.20         9.17        10.29        14.53 
TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X 
       16.34        16.73         1.91        16.50         5.03        11.08 
TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X 
       12.99        88.83        94.03        32.65        59.38        30.87 
TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 
        5.46         9.90        28.08         2.07        19.59        30.67 
TCGA-S9-A6TS TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ 
       62.17        18.77        37.84        34.49        31.33        28.70 
TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 
       22.95        17.62        23.64        32.61        16.08        98.24 
TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG 
       95.93         5.85       106.39        69.50        72.59        80.12 
TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP 
       32.45        84.99        31.10        15.91        18.61        15.16 
TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7J1 
       14.07        36.13         7.92        22.32        23.51         8.19 
TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 
       17.03        15.06        13.12        28.37        13.02       169.84 
TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V 
       10.39        99.06        30.05        98.63        31.59        18.71 
TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF 
       11.97        49.45        48.33        49.32        34.78        48.39 
TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J 
       16.18        59.05        40.64        30.44        28.08        24.16 
TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S 
       40.83        24.79        33.24        25.38        18.61        14.93 
TCGA-TM-A84T TCGA-TQ-A7RH TCGA-TQ-A7RW TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA 
       23.80        15.98        26.99        43.04        30.08        13.51 
TCGA-VM-A8CB TCGA-VM-A8CE TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS 
        0.10        35.93        23.47        37.05        16.01        23.21 
TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A 
        8.05        51.06        13.32        43.96        39.88        43.40 
TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       45.80        46.88        37.71        20.81 

  AMP PEAK  8(4P16.3) MUTATED AMP PEAK  8(4P16.3) WILD-TYPE 
                         0.20                          0.03 
  AMP PEAK  8(4P16.3) MUTATED AMP PEAK  8(4P16.3) WILD-TYPE 
                        94.52                        211.17 
  AMP PEAK  8(4P16.3) MUTATED AMP PEAK  8(4P16.3) WILD-TYPE 
                        12.43                         14.93 
[1] "0.2 - 94.5 (12.4)"  "0.0 - 211.2 (14.9)"
[1] "hr=" "1.5"
D8V2, continuous
D8V3, binary
                               cls
clus                              0   1
  AMP PEAK  8(4P16.3) MUTATED    48  21
  AMP PEAK  8(4P16.3) WILD-TYPE 522 451
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  8(4P16.3) MUTATED     48   21
  AMP PEAK  8(4P16.3) WILD-TYPE  522  451
                        clus
vv                       AMP PEAK  8(4P16.3) MUTATED
  BRAIN                                           48
  CENTRAL NERVOUS SYSTEM                          21
                        clus
vv                       AMP PEAK  8(4P16.3) WILD-TYPE
  BRAIN                                            522
  CENTRAL NERVOUS SYSTEM                           451
[1] 2 2
[1] FALSE
D8V4, binary
                               cls
clus                              0   1
  AMP PEAK  8(4P16.3) MUTATED    31  38
  AMP PEAK  8(4P16.3) WILD-TYPE 399 574
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  8(4P16.3) MUTATED     31   38
  AMP PEAK  8(4P16.3) WILD-TYPE  399  574
        clus
vv       AMP PEAK  8(4P16.3) MUTATED AMP PEAK  8(4P16.3) WILD-TYPE
  FEMALE                          31                           399
  MALE                            38                           574
[1] 2 2
[1] FALSE
D8V5, continuous
                               vv
clus                            ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  AMP PEAK  8(4P16.3) MUTATED            12                             1
  AMP PEAK  8(4P16.3) WILD-TYPE         164                            26
                               vv
clus                            OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  AMP PEAK  8(4P16.3) MUTATED                  3                 6
  AMP PEAK  8(4P16.3) WILD-TYPE              115               172
                               vv
clus                            TREATED PRIMARY GBM
  AMP PEAK  8(4P16.3) MUTATED                     1
  AMP PEAK  8(4P16.3) WILD-TYPE                  17
                               vv
clus                            UNTREATED PRIMARY (DE NOVO) GBM
  AMP PEAK  8(4P16.3) MUTATED                                46
  AMP PEAK  8(4P16.3) WILD-TYPE                             479
D8V6, multiclass
                                 clus
vv                                AMP PEAK  8(4P16.3) MUTATED
  ASTROCYTOMA                                              12
  GLIOBLASTOMA MULTIFORME (GBM)                             1
  OLIGOASTROCYTOMA                                          3
  OLIGODENDROGLIOMA                                         6
  TREATED PRIMARY GBM                                       1
  UNTREATED PRIMARY (DE NOVO) GBM                          46
                                 clus
vv                                AMP PEAK  8(4P16.3) WILD-TYPE
  ASTROCYTOMA                                               164
  GLIOBLASTOMA MULTIFORME (GBM)                              26
  OLIGOASTROCYTOMA                                          115
  OLIGODENDROGLIOMA                                         172
  TREATED PRIMARY GBM                                        17
  UNTREATED PRIMARY (DE NOVO) GBM                           479
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D8V7, binary
                               cls
clus                              0   1
  AMP PEAK  8(4P16.3) MUTATED    37  32
  AMP PEAK  8(4P16.3) WILD-TYPE 437 536
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  8(4P16.3) MUTATED     37   32
  AMP PEAK  8(4P16.3) WILD-TYPE  437  536
     clus
vv    AMP PEAK  8(4P16.3) MUTATED AMP PEAK  8(4P16.3) WILD-TYPE
  NO                           37                           437
  YES                          32                           536
[1] 2 2
[1] FALSE
                               vv
clus                            AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK  8(4P16.3) MUTATED                                  0     0
  AMP PEAK  8(4P16.3) WILD-TYPE                                1    21
                               vv
clus                            BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK  8(4P16.3) MUTATED                           5    63
  AMP PEAK  8(4P16.3) WILD-TYPE                        59   859
D8V8, multiclass
                                  clus
vv                                 AMP PEAK  8(4P16.3) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                           0
  ASIAN                                                      0
  BLACK OR AFRICAN AMERICAN                                  5
  WHITE                                                     63
                                  clus
vv                                 AMP PEAK  8(4P16.3) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                             1
  ASIAN                                                       21
  BLACK OR AFRICAN AMERICAN                                   59
  WHITE                                                      859
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D8V9, binary
                               cls
clus                              0   1
  AMP PEAK  8(4P16.3) MUTATED     2  61
  AMP PEAK  8(4P16.3) WILD-TYPE  28 830
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  8(4P16.3) MUTATED      2   61
  AMP PEAK  8(4P16.3) WILD-TYPE   28  830
                        clus
vv                       AMP PEAK  8(4P16.3) MUTATED
  HISPANIC OR LATINO                               2
  NOT HISPANIC OR LATINO                          61
                        clus
vv                       AMP PEAK  8(4P16.3) WILD-TYPE
  HISPANIC OR LATINO                                28
  NOT HISPANIC OR LATINO                           830
[1] 2 2
[1] FALSE

Clustering(9) Variable = AMP PEAK  9(4Q12) MUTATION ANALYSIS
D9V1, survival
                             sevent
clus2                           0   1
  AMP PEAK  9(4Q12) MUTATED    38  96
  AMP PEAK  9(4Q12) WILD-TYPE 442 463
  AMP PEAK  9(4Q12) MUTATED AMP PEAK  9(4Q12) WILD-TYPE 
                        134                         905 
  AMP PEAK  9(4Q12) MUTATED AMP PEAK  9(4Q12) WILD-TYPE 
                         96                         463 
$`AMP PEAK  9(4Q12) MUTATED`
TCGA-02-0014 TCGA-02-0024 TCGA-02-0055 TCGA-02-0069 TCGA-02-0074 TCGA-02-0075 
       82.59        53.10         2.50        28.70        10.19        20.84 
TCGA-02-0079 TCGA-02-0113 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0339 
       27.25        92.65         3.98        13.87        14.20        12.39 
TCGA-02-0440 TCGA-02-0446 TCGA-02-2485 TCGA-06-0130 TCGA-06-0138 TCGA-06-0143 
       11.34         9.27        15.45        12.95        24.23        11.74 
TCGA-06-0155 TCGA-06-0166 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0177 
       10.45         5.85        13.12         4.47         3.22         4.18 
TCGA-06-0192 TCGA-06-0195 TCGA-06-0210 TCGA-06-0211 TCGA-06-0214 TCGA-06-0221 
       38.96         7.40         7.40        11.84        15.02        19.82 
TCGA-06-0241 TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 TCGA-06-0412 TCGA-06-0649 
       48.69         0.26        72.36         4.70         9.57         2.10 
TCGA-06-0743 TCGA-06-0875 TCGA-06-0879 TCGA-06-1802 TCGA-06-2559 TCGA-06-5408 
       26.40        43.46        40.41        15.32         4.93        11.74 
TCGA-06-5856 TCGA-06-6695 TCGA-08-0245 TCGA-08-0246 TCGA-08-0347 TCGA-08-0353 
        3.75         8.32        37.84         4.18        25.71         8.42 
TCGA-08-0510 TCGA-08-0514 TCGA-08-0516 TCGA-08-0524 TCGA-08-0531 TCGA-12-0616 
        4.27        11.08        19.59         7.27         7.56        14.73 
TCGA-12-0692 TCGA-12-0828 TCGA-12-1096 TCGA-12-1097 TCGA-12-3646 TCGA-14-0740 
        3.65         8.94         9.11        14.53        44.02        11.97 
TCGA-14-0812 TCGA-14-0817 TCGA-14-0865 TCGA-14-1455 TCGA-14-1821 TCGA-14-1825 
        3.25         5.39        16.50         0.92        17.79         7.63 
TCGA-14-1829 TCGA-14-3477 TCGA-16-0846 TCGA-16-0848 TCGA-19-0957 TCGA-19-0960 
        7.17         3.78         3.91        17.59        21.90         8.61 
TCGA-19-0963 TCGA-19-1387 TCGA-19-1388 TCGA-19-1390 TCGA-19-1392 TCGA-19-2631 
       14.27         5.95        12.95        25.38         3.65         7.00 
TCGA-19-A60I TCGA-19-A6J4 TCGA-26-1438 TCGA-26-1439 TCGA-26-5132 TCGA-26-5134 
       17.79         3.98        10.03        13.87         9.40         5.49 
TCGA-26-5135 TCGA-27-1830 TCGA-27-1834 TCGA-28-2506 TCGA-28-5211 TCGA-28-5215 
        8.88         5.06        40.54         6.74        11.77        11.01 
TCGA-28-5216 TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 TCGA-32-1991 TCGA-32-4210 
       13.64        21.07         0.49         0.10        16.93         3.72 
TCGA-32-4211 TCGA-32-5222 TCGA-41-2575 TCGA-41-3915 TCGA-41-4097 TCGA-74-6575 
       12.59        19.23         9.53        11.84         0.20        20.91 
TCGA-76-4928 TCGA-76-4934 TCGA-76-4935 TCGA-76-6193 TCGA-RR-A6KA TCGA-CS-4943 
        3.09         2.53        10.78         2.70         6.28        18.15 
TCGA-CS-6665 TCGA-CS-6666 TCGA-DB-5277 TCGA-DB-A75O TCGA-DH-A7UU TCGA-DU-7010 
       12.43         8.48        50.86        30.74         3.45        14.99 
TCGA-DU-7302 TCGA-DU-7309 TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A7TD TCGA-E1-5304 
       60.30         2.76        15.12         4.96         7.50        41.13 
TCGA-E1-5307 TCGA-FG-A6J3 TCGA-FG-A87Q TCGA-HT-7477 TCGA-HT-7856 TCGA-HT-7882 
       57.93        22.26         5.72        24.26        39.09         3.72 
TCGA-HT-A5R7 TCGA-S9-A6U0 TCGA-S9-A6WQ TCGA-S9-A7IS TCGA-S9-A7J0 TCGA-S9-A89Z 
       20.22        22.95        14.07         7.92        20.02        11.97 
TCGA-TM-A84I TCGA-VW-A8FI 
       28.08         8.05 

$`AMP PEAK  9(4Q12) WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
       11.77         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0025 
       20.71        20.61        87.06        77.65        20.12        42.74 
TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 
       24.59        12.16        90.58         2.83        14.14         3.62 
TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 
       10.72        10.52        18.31         6.87        14.73         3.22 
TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 
       15.09        12.59         6.54        19.86         8.35         9.57 
TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0070 TCGA-02-0071 TCGA-02-0080 
        6.02        19.73        26.43        25.05         5.49        89.72 
TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 
       22.72        12.62        51.32         8.81        57.76        16.96 
TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 
        3.48        27.02        65.00        11.67        17.65        23.18 
TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 
       99.98        15.65        48.95        16.54        16.93        17.72 
TCGA-02-0269 TCGA-02-0271 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 
       10.75        14.47        15.95        12.23         9.90         7.73 
TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 
       10.62         7.33        15.91        25.71         4.37        25.12 
TCGA-02-0338 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0451 TCGA-02-0456 
       10.59        14.50        10.55        47.11        16.21         3.35 
TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 
       16.80        12.92        15.32        20.32         2.70         6.15 
TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 
       20.38        47.61         6.94         3.98        22.72        33.67 
TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 
       25.35        14.30        26.70        11.90         0.20        10.29 
TCGA-06-0142 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 
        2.20         2.33        20.09        17.79        10.09         8.61 
TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0157 TCGA-06-0158 
       19.46        46.59        12.33        13.94         3.19        10.82 
TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0168 
        9.44        11.80         3.42        56.91        10.65        19.66 
TCGA-06-0169 TCGA-06-0175 TCGA-06-0176 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 
        3.29         4.04        91.00        88.14        20.25         3.65 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 
       69.90        73.84        27.22        44.58        15.42        10.42 
TCGA-06-0194 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 
        4.67         5.56         0.39         7.66         8.42         7.63 
TCGA-06-0213 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 
        0.53        24.16         0.72        13.64        13.32        20.42 
TCGA-06-0394 TCGA-06-0397 TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 
       10.82         9.01         3.16        35.11        12.62         5.75 
TCGA-06-0646 TCGA-06-0648 TCGA-06-0650 TCGA-06-0686 TCGA-06-0744 TCGA-06-0745 
        5.75         9.80        23.57        14.20        46.88         7.86 
TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 
        2.70         2.70         0.92        46.19         5.65         7.17 
TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1087 
       16.57        20.78        26.76        23.93         6.84         4.04 
TCGA-06-1800 TCGA-06-1801 TCGA-06-1804 TCGA-06-1805 TCGA-06-1806 TCGA-06-2557 
       26.79        11.84        13.61        33.90        15.32         1.08 
TCGA-06-2558 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 
       12.49        17.65        12.56        30.64         5.95        16.64 
TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5410 TCGA-06-5411 
        5.98         4.37         0.43        31.50         3.55         8.35 
TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 
        4.54         8.81         8.98         8.55         6.71         2.73 
TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 
        6.15         4.57         5.23         7.79         5.39         1.48 
TCGA-06-6693 TCGA-06-6694 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
      120.56         7.36        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-06-A5U0 TCGA-06-A5U1 TCGA-06-A6S0 TCGA-06-A6S1 TCGA-06-A7TK 
        4.96         4.70         1.87         3.12         2.56         5.39 
TCGA-06-A7TL TCGA-08-0244 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0348 
        5.42        22.68       115.86         1.74         8.42        12.16 
TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0354 TCGA-08-0355 
        9.80        29.23        65.33         1.28        17.95        24.56 
TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 
       31.10        37.58        22.29         3.39        12.23        14.93 
TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0512 
       18.02        15.35        13.97         0.72        12.56        42.15 
TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0525 TCGA-08-0529 
       58.68        19.33        10.75         4.80        15.98        18.41 
TCGA-12-0615 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 
       15.35        12.99        34.92        10.45         7.59        94.78 
TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0703 
        0.10        38.17        25.97        26.66        12.13        20.38 
TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 
       28.41        15.06        53.85        43.23         7.63         9.73 
TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 
       14.93        14.86        91.76        24.79        18.48        10.62 
TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 
       23.51        27.78        38.76        20.58       127.59         5.82 
TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 
        7.59        33.21        21.73        15.98        12.23        15.85 
TCGA-12-1098 TCGA-12-1099 TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 
        3.98         4.14        15.65        25.68        14.73         6.77 
TCGA-12-3644 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 
       59.77        26.93        15.22        10.95        12.69        34.92 
TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0781 
       14.53        14.93         3.22         2.04        15.12         0.95 
TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 
        6.21        23.05         2.24        11.24        13.78         1.35 
TCGA-14-0862 TCGA-14-0866 TCGA-14-0867 TCGA-14-0871 TCGA-14-1034 TCGA-14-1037 
        2.89        26.33         2.04        28.93        15.95        19.30 
TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 
        0.79         1.38         1.12         3.75        32.05        58.78 
TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 TCGA-14-1456 TCGA-14-1458 
       23.11         7.10         1.15        30.18        40.96         6.67 
TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1823 TCGA-14-1827 TCGA-14-2554 
       12.43         0.99         1.97        17.85         5.88        17.49 
TCGA-14-2555 TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 TCGA-15-1447 
        7.96         3.42        13.78        50.53        19.10        53.19 
TCGA-15-1449 TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 
       13.28        26.07        16.37         4.31        29.03         4.57 
TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 
       10.29        14.01         9.14        21.24        13.97         6.41 
TCGA-19-0955 TCGA-19-0962 TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 TCGA-19-1389 
       11.77         0.66         3.39        10.75         9.07         4.64 
TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 
        7.17        12.66         3.25         0.13         9.67         4.87 
TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-4065 
        1.08         7.53         0.16         4.08        24.23         7.04 
TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 
        6.64        17.19         8.02        18.90         4.73        12.10 
TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-19-A6J5 
        1.78        22.49        14.07        16.80        14.96        28.54 
TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5133 TCGA-26-5136 
        9.73        31.33         7.13         9.37        14.86        18.97 
TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-26-A7UX TCGA-27-1831 TCGA-27-1832 
        1.58         7.92         2.33        19.33        16.60         9.86 
TCGA-27-1833 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 
       24.23        21.30        30.05        14.04        11.51        24.76 
TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 
       10.39        10.39        16.08         7.59         2.86        14.40 
TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 
       15.78         0.20         2.53         9.21         8.35         7.63 
TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 
        8.48         1.22         1.55         2.83         0.13         0.66 
TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 
        4.77         7.30         5.26        14.93        11.28        17.88 
TCGA-28-5209 TCGA-28-5213 TCGA-28-5214 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 
       14.53        31.27        23.44         5.16        22.68        12.76 
TCGA-28-6450 TCGA-32-1970 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 
        5.42        15.39        15.85        19.50         1.18         4.67 
TCGA-32-1986 TCGA-32-1987 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 
       12.69        14.86        12.23        20.78        15.02        15.95 
TCGA-32-2616 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4213 
        7.36         8.84        22.78        25.18        21.14        19.86 
TCGA-32-4719 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-3392 TCGA-41-3393 
       10.85         0.85        13.35         8.94         0.99         4.44 
TCGA-41-5651 TCGA-41-6646 TCGA-4W-AA9S TCGA-4W-AA9T TCGA-74-6573 TCGA-74-6577 
       15.12        12.46         4.14        14.76         3.45         4.34 
TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4929 
       14.33         8.22         7.50         4.80         4.54         3.65 
TCGA-76-4931 TCGA-76-6191 TCGA-76-6192 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 
        9.17        16.70         3.29        11.38        17.06         8.35 
TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 
       20.98         4.83         5.03         0.23         9.27         7.73 
TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 TCGA-OX-A56R TCGA-RR-A6KC 
        7.79         1.61        17.72        26.30         5.92        20.55 
TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 
        4.70         7.69        43.89        10.62        64.64        40.18 
TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 
        0.10        21.01         9.96         6.38        17.69        23.84 
TCGA-CS-6290 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 
       17.95         7.56         8.02         7.40         6.61       122.73 
TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5278 TCGA-DB-5279 
       81.96        75.25        47.93        72.92        50.17        44.52 
TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC 
       36.56        78.28        46.42        18.84        30.21        46.72 
TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L 
       39.78        37.45        33.57        72.95        31.63        24.20 
TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U 
       25.48        30.12         5.98        31.40        27.45        27.81 
TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M 
       29.23        14.40        18.51        12.10        11.24        17.88 
TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 
       16.18        19.96        31.82        30.31        14.40         8.02 
TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR 
       30.21        42.05        27.81        17.19        17.19        54.25 
TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 
       13.12        13.38        18.61        18.02        14.56        17.46 
TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 
        6.74        13.38         8.45         6.81       182.33        18.94 
TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 
       17.49        15.16       211.17        52.11        22.42        49.02 
TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 
       75.16        46.06        65.75         1.22        87.45         7.04 
TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 
       11.64       133.74        19.89        16.83        94.52       114.08 
TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 
        7.96         7.73        11.47        62.96       156.23       138.28 
TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7014 TCGA-DU-7015 TCGA-DU-7018 
      105.21         6.54         8.84       117.40        90.77        30.67 
TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 
       26.30        10.36         7.96        94.32        18.94        44.02 
TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-8158 TCGA-DU-8161 
       62.01        25.91        23.31        41.98         5.10        23.74 
TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 
       14.60        20.68        21.40        19.13        16.96        15.48 
TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY 
       14.17        14.24        12.59         3.65         5.65        12.20 
TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K 
        8.65         2.70        77.98         7.23         5.98        11.41 
TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA 
       26.76         7.13        21.30        17.98       124.50        77.88 
TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 
       42.31        23.51        44.42         0.56        50.14        67.46 
TCGA-E1-5305 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YO 
       79.99       134.27        78.21        95.57       130.78        75.02 
TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 
       32.45        36.82        32.35        14.33         0.23         0.20 
TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 
       47.77        25.48        34.36        36.82        18.77        14.93 
TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7638 
       24.99        23.97        18.44        15.35        17.88        22.55 
TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 
       20.61        20.09        12.95        13.68        14.24        16.01 
TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU 
       20.09        14.96        22.52        32.61        38.27        10.72 
TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L 
       18.38        18.71        23.70        14.76        17.82        16.41 
TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 
       15.02        16.44        28.54        10.78        36.66        48.69 
TCGA-FG-A713 TCGA-FG-A87N TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 
       20.45        13.58        27.52         0.10         6.67        11.54 
TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 
       40.11         0.13         0.03        16.54         3.75        17.42 
TCGA-HT-7476 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 
        6.54         6.38        40.34        75.19        95.93       106.95 
TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 
      172.77         4.01         5.03        29.85        23.18       122.47 
TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 
        4.57        17.29         3.16        22.06        45.99        56.09 
TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 
       57.60         0.23        14.27         0.16        16.24         0.76 
TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 
       44.68         6.05        42.74         0.10        31.69        14.96 
TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 
        0.10         0.10         2.96        17.52         6.90        14.53 
TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 
       39.48        19.23         0.23        50.63         0.49        23.61 
TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 
       37.15         0.33         0.13         3.68         5.33        35.47 
TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 
       11.28        31.43         1.64        16.24         9.40        63.55 
TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 
        0.10        37.87        33.01        12.23         6.25         0.10 
TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 
        0.46         2.50         5.56        13.78         0.23        29.59 
TCGA-HT-8114 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 
       34.19        28.27        15.72         0.23        26.04         0.13 
TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 
        0.07        27.35         0.10         5.33         2.70        16.93 
TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61B TCGA-HT-A61C 
        1.81        16.14        16.83        21.40        17.52        17.65 
TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 
        2.43        10.52        15.35        11.05         0.10        29.92 
TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7493 TCGA-HW-7495 
       19.89         8.32        19.23        40.18        35.90         4.31 
TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK 
       21.70        21.60        19.59        17.82        20.35        12.76 
TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 
       20.81        20.71        19.00        42.77        14.40        14.40 
TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 
        0.23         6.71         1.64         2.37         2.30         4.11 
TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W 
        5.88         7.63         0.76         1.28         0.16        10.42 
TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-QH-A65R 
       13.25        11.64         0.20         9.01        13.61        15.16 
TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU 
        2.53        12.62        15.85        14.04        19.33        14.83 
TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 
       14.53        13.61        12.23         2.20         9.17        10.29 
TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC 
       14.53        16.34        16.73         1.91        16.50         5.03 
TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M 
       11.08        12.99        88.83        94.03        32.65        59.38 
TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 
       30.87         5.46         9.90        28.08         2.07        19.59 
TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX 
       30.67        62.17        87.12        18.77        37.84        34.49 
TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 
       31.33        28.70        17.62        23.64        32.61        16.08 
TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE 
       98.24        95.93         5.85       106.39        69.50        72.59 
TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN 
       80.12        32.45        84.99        31.10        19.86        15.91 
TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A7IQ TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ 
       18.61        15.16        36.13        22.32        23.51         7.13 
TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY 
        8.19         2.04        17.03        15.06        13.12        28.37 
TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 
       13.02       169.84        10.39        99.06        30.05        98.63 
TCGA-S9-A7R8 TCGA-S9-A89V TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA 
       31.59        18.71        49.45        48.33        49.32        34.78 
TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H 
       48.39        24.92        16.18        59.05        40.64        30.44 
TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R 
       24.16        40.83        24.79        33.24        25.38        18.61 
TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RH TCGA-TQ-A7RW TCGA-VM-A8C8 TCGA-VM-A8C9 
       14.93        23.80        15.98        26.99        43.04        30.08 
TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CH TCGA-VV-A829 
       13.51         0.10         7.89        35.93        23.47        37.05 
TCGA-VV-A86M TCGA-VW-A7QS TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 
       16.01        23.21        51.06        13.32        43.96        39.88 
TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       43.40        45.80        46.88        37.71        20.81 

  AMP PEAK  9(4Q12) MUTATED AMP PEAK  9(4Q12) WILD-TYPE 
                       0.10                        0.03 
  AMP PEAK  9(4Q12) MUTATED AMP PEAK  9(4Q12) WILD-TYPE 
                      92.65                      211.17 
  AMP PEAK  9(4Q12) MUTATED AMP PEAK  9(4Q12) WILD-TYPE 
                      11.74                       15.12 
[1] "0.1 - 92.7 (11.7)"  "0.0 - 211.2 (15.1)"
[1] "hr=" "1.9"
D9V2, continuous
D9V3, binary
                             cls
clus                            0   1
  AMP PEAK  9(4Q12) MUTATED   107  27
  AMP PEAK  9(4Q12) WILD-TYPE 463 445
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  9(4Q12) MUTATED    107   27
  AMP PEAK  9(4Q12) WILD-TYPE  463  445
                        clus
vv                       AMP PEAK  9(4Q12) MUTATED AMP PEAK  9(4Q12) WILD-TYPE
  BRAIN                                        107                         463
  CENTRAL NERVOUS SYSTEM                        27                         445
[1] 2 2
[1] FALSE
D9V4, binary
                             cls
clus                            0   1
  AMP PEAK  9(4Q12) MUTATED    49  85
  AMP PEAK  9(4Q12) WILD-TYPE 381 527
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  9(4Q12) MUTATED     49   85
  AMP PEAK  9(4Q12) WILD-TYPE  381  527
        clus
vv       AMP PEAK  9(4Q12) MUTATED AMP PEAK  9(4Q12) WILD-TYPE
  FEMALE                        49                         381
  MALE                          85                         527
[1] 2 2
[1] FALSE
D9V5, continuous
                             vv
clus                          ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  AMP PEAK  9(4Q12) MUTATED            18                             3
  AMP PEAK  9(4Q12) WILD-TYPE         158                            24
                             vv
clus                          OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  AMP PEAK  9(4Q12) MUTATED                  2                 7
  AMP PEAK  9(4Q12) WILD-TYPE              116               171
                             vv
clus                          TREATED PRIMARY GBM
  AMP PEAK  9(4Q12) MUTATED                     2
  AMP PEAK  9(4Q12) WILD-TYPE                  16
                             vv
clus                          UNTREATED PRIMARY (DE NOVO) GBM
  AMP PEAK  9(4Q12) MUTATED                               102
  AMP PEAK  9(4Q12) WILD-TYPE                             423
D9V6, multiclass
                                 clus
vv                                AMP PEAK  9(4Q12) MUTATED
  ASTROCYTOMA                                            18
  GLIOBLASTOMA MULTIFORME (GBM)                           3
  OLIGOASTROCYTOMA                                        2
  OLIGODENDROGLIOMA                                       7
  TREATED PRIMARY GBM                                     2
  UNTREATED PRIMARY (DE NOVO) GBM                       102
                                 clus
vv                                AMP PEAK  9(4Q12) WILD-TYPE
  ASTROCYTOMA                                             158
  GLIOBLASTOMA MULTIFORME (GBM)                            24
  OLIGOASTROCYTOMA                                        116
  OLIGODENDROGLIOMA                                       171
  TREATED PRIMARY GBM                                      16
  UNTREATED PRIMARY (DE NOVO) GBM                         423
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D9V7, binary
                             cls
clus                            0   1
  AMP PEAK  9(4Q12) MUTATED    71  63
  AMP PEAK  9(4Q12) WILD-TYPE 403 505
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  9(4Q12) MUTATED     71   63
  AMP PEAK  9(4Q12) WILD-TYPE  403  505
     clus
vv    AMP PEAK  9(4Q12) MUTATED AMP PEAK  9(4Q12) WILD-TYPE
  NO                         71                         403
  YES                        63                         505
[1] 2 2
[1] FALSE
                             vv
clus                          AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK  9(4Q12) MUTATED                                  0     1
  AMP PEAK  9(4Q12) WILD-TYPE                                1    20
                             vv
clus                          BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK  9(4Q12) MUTATED                          11   119
  AMP PEAK  9(4Q12) WILD-TYPE                        53   803
D9V8, multiclass
                                  clus
vv                                 AMP PEAK  9(4Q12) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                         0
  ASIAN                                                    1
  BLACK OR AFRICAN AMERICAN                               11
  WHITE                                                  119
                                  clus
vv                                 AMP PEAK  9(4Q12) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                           1
  ASIAN                                                     20
  BLACK OR AFRICAN AMERICAN                                 53
  WHITE                                                    803
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D9V9, binary
                             cls
clus                            0   1
  AMP PEAK  9(4Q12) MUTATED     3 114
  AMP PEAK  9(4Q12) WILD-TYPE  27 777
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  9(4Q12) MUTATED      3  114
  AMP PEAK  9(4Q12) WILD-TYPE   27  777
                        clus
vv                       AMP PEAK  9(4Q12) MUTATED AMP PEAK  9(4Q12) WILD-TYPE
  HISPANIC OR LATINO                             3                          27
  NOT HISPANIC OR LATINO                       114                         777
[1] 2 2
[1] FALSE

Clustering(10) Variable = AMP PEAK 10(5P15.33) MUTATION ANALYSIS
D10V1, survival
                                sevent
clus2                              0   1
  AMP PEAK 10(5P15.33) MUTATED    20  54
  AMP PEAK 10(5P15.33) WILD-TYPE 460 505
  AMP PEAK 10(5P15.33) MUTATED AMP PEAK 10(5P15.33) WILD-TYPE 
                            74                            965 
  AMP PEAK 10(5P15.33) MUTATED AMP PEAK 10(5P15.33) WILD-TYPE 
                            54                            505 
$`AMP PEAK 10(5P15.33) MUTATED`
TCGA-02-0001 TCGA-02-0024 TCGA-02-0025 TCGA-02-0028 TCGA-02-0051 TCGA-02-0054 
       11.77        53.10        42.74        90.58        15.09         6.54 
TCGA-02-0059 TCGA-02-0075 TCGA-02-0079 TCGA-02-0086 TCGA-02-0106 TCGA-02-0113 
        9.57        20.84        27.25         8.81        11.67        92.65 
TCGA-02-0266 TCGA-02-0324 TCGA-02-0456 TCGA-06-0151 TCGA-06-0195 TCGA-06-0209 
       17.72         7.73         3.35        46.59         7.40         7.63 
TCGA-06-0237 TCGA-06-0397 TCGA-06-0409 TCGA-06-0410 TCGA-06-0645 TCGA-06-0649 
       13.64         9.01        72.36         4.70         5.75         2.10 
TCGA-06-1806 TCGA-06-2557 TCGA-06-2564 TCGA-06-5856 TCGA-08-0350 TCGA-08-0510 
       15.32         1.08         5.95         3.75        29.23         4.27 
TCGA-08-0518 TCGA-08-0524 TCGA-12-0691 TCGA-12-0772 TCGA-12-0778 TCGA-12-0826 
       19.33         7.27        12.13        53.85        14.93        27.78 
TCGA-12-0827 TCGA-12-1096 TCGA-12-1098 TCGA-12-1602 TCGA-12-3646 TCGA-14-1396 
       38.76         9.11         3.98         6.77        44.02         1.12 
TCGA-14-1823 TCGA-15-1447 TCGA-19-0955 TCGA-19-5954 TCGA-19-A6J4 TCGA-28-2506 
       17.85        53.19        11.77        12.10         3.98         6.74 
TCGA-28-2509 TCGA-28-5211 TCGA-28-5216 TCGA-32-1973 TCGA-32-1982 TCGA-32-2495 
        4.77        11.77        13.64        21.07         4.67        15.02 
TCGA-32-2616 TCGA-32-2632 TCGA-32-4210 TCGA-41-2575 TCGA-74-6575 TCGA-76-4934 
        7.36         8.84         3.72         9.53        20.91         2.53 
TCGA-DB-5281 TCGA-DU-A5TT TCGA-F6-A8O4 TCGA-FG-5963 TCGA-HT-7477 TCGA-HT-A61B 
       78.28         4.96         0.20        25.48        24.26        17.52 
TCGA-HW-8321 TCGA-QH-A65S TCGA-QH-A6CV TCGA-S9-A6TS TCGA-S9-A6WP TCGA-TM-A7C3 
       19.59         2.53        14.53        62.17        15.16        49.45 
TCGA-VM-A8C9 TCGA-VW-A8FI 
       30.08         8.05 

$`AMP PEAK 10(5P15.33) WILD-TYPE`
TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 TCGA-02-0011 
        4.73        18.35        23.18        10.59        35.41        20.71 
TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0026 
       82.59        20.61        87.06        77.65        20.12        24.59 
TCGA-02-0027 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 
       12.16         2.83        14.14         3.62        10.72        10.52 
TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 TCGA-02-0052 TCGA-02-0055 
       18.31         6.87        14.73         3.22        12.59         2.50 
TCGA-02-0057 TCGA-02-0058 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 
       19.86         8.35         6.02        19.73        26.43        28.70 
TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 
       25.05         5.49        10.19        89.72        22.72        12.62 
TCGA-02-0085 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 
       51.32        57.76        16.96         3.48        27.02        65.00 
TCGA-02-0107 TCGA-02-0111 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 
       17.65        23.18        99.98        15.65        48.95        16.54 
TCGA-02-0260 TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 
       16.93        10.75        14.47         3.98        13.87        14.20 
TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 
       15.95        12.23         9.90        10.62         7.33        15.91 
TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 
       25.71         4.37        25.12        10.59        12.39        14.50 
TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-2466 
       10.55        47.11        11.34         9.27        16.21        16.80 
TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 
       12.92        15.32        15.45        20.32         2.70         6.15 
TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 
       20.38        47.61         6.94         3.98        22.72        33.67 
TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 
       12.95        25.35        14.30        26.70        24.23        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 
        0.20        10.29         2.20        11.74         2.33        20.09 
TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0152 TCGA-06-0154 
       17.79        10.09         8.61        19.46        12.33        13.94 
TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 
       10.45         3.19        10.82         9.44        11.80         3.42 
TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 
       56.91        10.65         5.85        19.66         3.29        13.12 
TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 
        4.47         3.22         4.04        91.00         4.18        88.14 
TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 
       20.25         3.65        69.90        73.84        27.22        44.58 
TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0197 TCGA-06-0201 
       15.42        10.42        38.96         4.67         5.56         0.39 
TCGA-06-0206 TCGA-06-0208 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 
        7.66         8.42         7.40        11.84         0.53        15.02 
TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 
       24.16         0.72        19.82        13.32        20.42        48.69 
TCGA-06-0394 TCGA-06-0402 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 
       10.82         0.26         9.57         3.16        35.11        12.62 
TCGA-06-0646 TCGA-06-0648 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        5.75         9.80        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1084 TCGA-06-1086 TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 
       23.93         6.84         4.04        26.79        11.84        15.32 
TCGA-06-1804 TCGA-06-1805 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 
       13.61        33.90        12.49         4.93        17.65        12.56 
TCGA-06-2563 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 
       30.64        16.64         5.98         4.37         0.43        31.50 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 
       11.74         3.55         8.35         4.54         8.81         8.98 
TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 
        8.55         6.71         2.73         6.15         4.57         5.23 
TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 
        7.79         5.39         1.48       120.56         7.36         8.32 
TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-06-A5U0 
       12.85         4.77         1.55         4.77         4.96         4.70 
TCGA-06-A5U1 TCGA-06-A6S0 TCGA-06-A6S1 TCGA-06-A7TK TCGA-06-A7TL TCGA-08-0244 
        1.87         3.12         2.56         5.39         5.42        22.68 
TCGA-08-0245 TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 
       37.84         4.18       115.86         1.74         8.42        25.71 
TCGA-08-0348 TCGA-08-0349 TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 
       12.16         9.80        65.33         1.28         8.42        17.95 
TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 
       24.56        31.10        37.58        22.29         3.39        12.23 
TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 
       14.93        18.02        15.35        13.97         0.72        12.56 
TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 TCGA-08-0520 TCGA-08-0521 
       42.15        11.08        19.59        58.68        10.75         4.80 
TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 
       15.98        18.41         7.56        15.35        14.73        12.99 
TCGA-12-0619 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 
       34.92        10.45         7.59        94.78         0.10        38.17 
TCGA-12-0670 TCGA-12-0688 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 
       25.97        26.66         3.65        20.38        28.41        15.06 
TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 
       43.23         7.63         9.73        14.86        91.76        24.79 
TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 
       18.48        10.62        23.51         8.94        20.58       127.59 
TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 
        5.82         7.59        33.21        21.73        15.98        12.23 
TCGA-12-1095 TCGA-12-1097 TCGA-12-1099 TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 
       15.85        14.53         4.14        15.65        25.68        14.73 
TCGA-12-3644 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 
       59.77        26.93        15.22        10.95        12.69        34.92 
TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 
       14.53        14.93         3.22         2.04        15.12        11.97 
TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 
        0.95         6.21        23.05         2.24        11.24        13.78 
TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 
        3.25         1.35         5.39         2.89        16.50        26.33 
TCGA-14-0867 TCGA-14-0871 TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 
        2.04        28.93        15.95        19.30         0.79         1.38 
TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 
        3.75        32.05        58.78        23.11         7.10         1.15 
TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 
       30.18         0.92        40.96         6.67        12.43         0.99 
TCGA-14-1795 TCGA-14-1821 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 
        1.97        17.79         7.63         5.88         7.17        17.49 
TCGA-14-2555 TCGA-14-3477 TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 
        7.96         3.78         3.42        13.78        50.53        19.10 
TCGA-15-1449 TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 
       13.28         3.91        17.59        26.07        16.37         4.31 
TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 
       29.03         4.57        10.29        14.01         9.14        21.24 
TCGA-16-1063 TCGA-16-1460 TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 
       13.97         6.41        21.90         8.61         0.66        14.27 
TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 
        3.39        10.75         9.07         5.95        12.95         4.64 
TCGA-19-1390 TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 
       25.38         3.65         7.17        12.66         3.25         0.13 
TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 
        9.67         4.87         1.08         7.53         0.16         4.08 
TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 
       24.23         7.00         7.04         6.64        17.19         8.02 
TCGA-19-5952 TCGA-19-5953 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 
       18.90         4.73         1.78        22.49        14.07        16.80 
TCGA-19-5960 TCGA-19-A60I TCGA-19-A6J5 TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 
       14.96        17.79        28.54        10.03        13.87         9.73 
TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 
       31.33         7.13         9.37         9.40        14.86         5.49 
TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-26-A7UX 
        8.88        18.97         1.58         7.92         2.33        19.33 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 
        5.06        16.60         9.86        24.23        40.54        21.30 
TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 
       30.05        14.04        11.51        24.76        10.39        10.39 
TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 
       16.08         7.59         2.86        14.40        15.78         0.20 
TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 
        2.53         9.21         8.35         7.63         8.48         1.22 
TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2513 TCGA-28-2514 
        1.55         2.83         0.13         0.66         7.30         5.26 
TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5213 TCGA-28-5214 
       14.93        11.28        17.88        14.53        31.27        23.44 
TCGA-28-5215 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 
       11.01         5.16        22.68        12.76         5.42        15.39 
TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1986 
        0.49         0.10        15.85        19.50         1.18        12.69 
TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2615 TCGA-32-2634 
       14.86        16.93        12.23        20.78        15.95        22.78 
TCGA-32-2638 TCGA-32-4208 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 
       25.18        21.14        12.59        19.86        10.85        19.23 
TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 
        0.85        13.35         8.94         0.99         4.44        11.84 
TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-4W-AA9S TCGA-4W-AA9T TCGA-74-6573 
        0.20        15.12        12.46         4.14        14.76         3.45 
TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 
        4.34        14.33         8.22         7.50         4.80         4.54 
TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 
        3.09         3.65         9.17        10.78        16.70         3.29 
TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 
        2.70        11.38        17.06         8.35        20.98         4.83 
TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 
        5.03         0.23         9.27         7.73         7.79         1.61 
TCGA-81-5911 TCGA-87-5896 TCGA-OX-A56R TCGA-RR-A6KA TCGA-RR-A6KC TCGA-CS-4938 
       17.72        26.30         5.92         6.28        20.55         4.70 
TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 
        7.69        43.89        18.15        10.62        64.64        40.18 
TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 
        0.10        21.01         9.96         6.38        17.69        23.84 
TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 
       17.95        12.43         8.48         7.56         8.02         7.40 
TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 
        6.61       122.73        81.96        75.25        47.93        72.92 
TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-A4X9 TCGA-DB-A4XA 
       50.86        50.17        44.52        36.56        46.42        18.84 
TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG 
       30.21        46.72        39.78        37.45        33.57        72.95 
TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R 
       31.63        24.20        25.48        30.12         5.98        31.40 
TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K 
       27.45        27.81        29.23        14.40        18.51        12.10 
TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 
       11.24        17.88        30.74        16.18        19.96        31.82 
TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D 
       30.31        14.40         8.02        30.21        42.05        27.81 
TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU 
       17.19        17.19        54.25        13.12        13.38         3.45 
TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 
       18.61        18.02        14.56        17.46         6.74        13.38 
TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 
        8.45         6.81       182.33        18.94        17.49        15.16 
TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 
      211.17        52.11        22.42        49.02        75.16        46.06 
TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 
       65.75         1.22        87.45         7.04        11.64       133.74 
TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 
       19.89        16.83        94.52       114.08         7.96         7.73 
TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 
       11.47        62.96       156.23       138.28        14.99       105.21 
TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7014 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 
        6.54         8.84       117.40        90.77        30.67        26.30 
TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 
       10.36         7.96        94.32        18.94        44.02        62.01 
TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 
       25.91        60.30        23.31        41.98         2.76         5.10 
TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 
       23.74        14.60        20.68        21.40        19.13        16.96 
TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TU 
       15.48        14.17        14.24        12.59        15.12         3.65 
TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 
        5.65        12.20         8.65         2.70        77.98         7.23 
TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 
        5.98        11.41        26.76         7.13        21.30        17.98 
TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG 
      124.50        77.88        42.31        23.51         7.50        44.42 
TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 
        0.56        50.14        67.46        41.13        79.99        57.93 
TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YO TCGA-E1-A7YV 
      134.27        78.21        95.57       130.78        75.02        32.45 
TCGA-E1-A7YW TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-FG-5962 TCGA-FG-5964 
       36.82        32.35        14.33         0.23        47.77        34.36 
TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 
       36.82        18.77        14.93        24.99        23.97        18.44 
TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 
       15.35        17.88        22.55        20.61        20.09        12.95 
TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 
       13.68        14.24        16.01        20.09        14.96        22.52 
TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY 
       32.61        38.27        10.72        18.38        18.71        23.70 
TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 
       14.76        17.82        16.41        15.02        16.44        22.26 
TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N 
       28.54        10.78        36.66        48.69        20.45        13.58 
TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 
        5.72        27.52         0.10         6.67        11.54        40.11 
TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 
        0.13         0.03        16.54         3.75        17.42         6.54 
TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 
        6.38        40.34        75.19        95.93       106.95       172.77 
TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 
        4.01         5.03        29.85        23.18       122.47         4.57 
TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 
       17.29         3.16        22.06        45.99        56.09        57.60 
TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 
        0.23        14.27         0.16        16.24         0.76        44.68 
TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 
        6.05        42.74         0.10        31.69        14.96         0.10 
TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 
        0.10         2.96        17.52         6.90        14.53        39.48 
TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 
       19.23        39.09         0.23        50.63         0.49        23.61 
TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 
       37.15         0.33         0.13         3.68         5.33        35.47 
TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 
        3.72        11.28        31.43         1.64        16.24         9.40 
TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 
       63.55         0.10        37.87        33.01        12.23         6.25 
TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 
        0.10         0.46         2.50         5.56        13.78         0.23 
TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV 
       29.59        34.19        28.27        15.72         0.23        26.04 
TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC 
        0.13        20.22         0.07        27.35         0.10         5.33 
TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 
        2.70        16.93         1.81        16.14        16.83        21.40 
TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O 
       17.65         2.43        10.52        15.35        11.05         0.10 
TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7493 
       29.92        19.89         8.32        19.23        40.18        35.90 
TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK 
        4.31        21.70        21.60        17.82        20.35        12.76 
TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 
       20.81        20.71        19.00        42.77        14.40        14.40 
TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 
        0.23         6.71         1.64         2.37         2.30         4.11 
TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W 
        5.88         7.63         0.76         1.28         0.16        10.42 
TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-QH-A65R 
       13.25        11.64         0.20         9.01        13.61        15.16 
TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CW 
       12.62        15.85        14.04        19.33        14.83        13.61 
TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 
       12.23         2.20         9.17        10.29        14.53        16.34 
TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 
       16.73         1.91        16.50         5.03        11.08        12.99 
TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y 
       88.83        94.03        32.65        59.38        30.87         5.46 
TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TU 
        9.90        28.08         2.07        19.59        30.67        87.12 
TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 
       18.77        37.84        34.49        31.33        28.70        22.95 
TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 
       17.62        23.64        32.61        16.08        98.24        95.93 
TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH 
        5.85       106.39        69.50        72.59        80.12        32.45 
TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WQ 
       84.99        31.10        19.86        15.91        18.61        14.07 
TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 
       36.13         7.92        22.32        23.51         7.13        20.02 
TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY 
        8.19         2.04        17.03        15.06        13.12        28.37 
TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 
       13.02       169.84        10.39        99.06        30.05        98.63 
TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA 
       31.59        18.71        11.97        48.33        49.32        34.78 
TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H 
       48.39        24.92        16.18        59.05        40.64        30.44 
TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q 
       28.08        24.16        40.83        24.79        33.24        25.38 
TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RH TCGA-TQ-A7RW TCGA-VM-A8C8 
       18.61        14.93        23.80        15.98        26.99        43.04 
TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CH TCGA-VV-A829 
       13.51         0.10         7.89        35.93        23.47        37.05 
TCGA-VV-A86M TCGA-VW-A7QS TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 
       16.01        23.21        51.06        13.32        43.96        39.88 
TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       43.40        45.80        46.88        37.71        20.81 

  AMP PEAK 10(5P15.33) MUTATED AMP PEAK 10(5P15.33) WILD-TYPE 
                          0.20                           0.03 
  AMP PEAK 10(5P15.33) MUTATED AMP PEAK 10(5P15.33) WILD-TYPE 
                         92.65                         211.17 
  AMP PEAK 10(5P15.33) MUTATED AMP PEAK 10(5P15.33) WILD-TYPE 
                        11.935                         14.930 
[1] "0.2 - 92.7 (11.9)"  "0.0 - 211.2 (14.9)"
[1] "hr=" "1.6"
D10V2, continuous
D10V3, binary
                                cls
clus                               0   1
  AMP PEAK 10(5P15.33) MUTATED    60  14
  AMP PEAK 10(5P15.33) WILD-TYPE 510 458
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 10(5P15.33) MUTATED     60   14
  AMP PEAK 10(5P15.33) WILD-TYPE  510  458
                        clus
vv                       AMP PEAK 10(5P15.33) MUTATED
  BRAIN                                            60
  CENTRAL NERVOUS SYSTEM                           14
                        clus
vv                       AMP PEAK 10(5P15.33) WILD-TYPE
  BRAIN                                             510
  CENTRAL NERVOUS SYSTEM                            458
[1] 2 2
[1] FALSE
D10V4, binary
                                cls
clus                               0   1
  AMP PEAK 10(5P15.33) MUTATED    34  40
  AMP PEAK 10(5P15.33) WILD-TYPE 396 572
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 10(5P15.33) MUTATED     34   40
  AMP PEAK 10(5P15.33) WILD-TYPE  396  572
        clus
vv       AMP PEAK 10(5P15.33) MUTATED AMP PEAK 10(5P15.33) WILD-TYPE
  FEMALE                           34                            396
  MALE                             40                            572
[1] 2 2
[1] FALSE
D10V5, continuous
                                vv
clus                             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  AMP PEAK 10(5P15.33) MUTATED             9                             3
  AMP PEAK 10(5P15.33) WILD-TYPE         167                            24
                                vv
clus                             OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  AMP PEAK 10(5P15.33) MUTATED                  4                 1
  AMP PEAK 10(5P15.33) WILD-TYPE              114               177
                                vv
clus                             TREATED PRIMARY GBM
  AMP PEAK 10(5P15.33) MUTATED                     4
  AMP PEAK 10(5P15.33) WILD-TYPE                  14
                                vv
clus                             UNTREATED PRIMARY (DE NOVO) GBM
  AMP PEAK 10(5P15.33) MUTATED                                53
  AMP PEAK 10(5P15.33) WILD-TYPE                             472
D10V6, multiclass
                                 clus
vv                                AMP PEAK 10(5P15.33) MUTATED
  ASTROCYTOMA                                                9
  GLIOBLASTOMA MULTIFORME (GBM)                              3
  OLIGOASTROCYTOMA                                           4
  OLIGODENDROGLIOMA                                          1
  TREATED PRIMARY GBM                                        4
  UNTREATED PRIMARY (DE NOVO) GBM                           53
                                 clus
vv                                AMP PEAK 10(5P15.33) WILD-TYPE
  ASTROCYTOMA                                                167
  GLIOBLASTOMA MULTIFORME (GBM)                               24
  OLIGOASTROCYTOMA                                           114
  OLIGODENDROGLIOMA                                          177
  TREATED PRIMARY GBM                                         14
  UNTREATED PRIMARY (DE NOVO) GBM                            472
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D10V7, binary
                                cls
clus                               0   1
  AMP PEAK 10(5P15.33) MUTATED    41  33
  AMP PEAK 10(5P15.33) WILD-TYPE 433 535
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 10(5P15.33) MUTATED     41   33
  AMP PEAK 10(5P15.33) WILD-TYPE  433  535
     clus
vv    AMP PEAK 10(5P15.33) MUTATED AMP PEAK 10(5P15.33) WILD-TYPE
  NO                            41                            433
  YES                           33                            535
[1] 2 2
[1] FALSE
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK 10(5P15.33) MUTATED                                  0     3
  AMP PEAK 10(5P15.33) WILD-TYPE                                1    18
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 10(5P15.33) MUTATED                           5    62
  AMP PEAK 10(5P15.33) WILD-TYPE                        59   860
D10V8, multiclass
                                  clus
vv                                 AMP PEAK 10(5P15.33) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            0
  ASIAN                                                       3
  BLACK OR AFRICAN AMERICAN                                   5
  WHITE                                                      62
                                  clus
vv                                 AMP PEAK 10(5P15.33) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              1
  ASIAN                                                        18
  BLACK OR AFRICAN AMERICAN                                    59
  WHITE                                                       860
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D10V9, binary
                                cls
clus                               0   1
  AMP PEAK 10(5P15.33) MUTATED     3  63
  AMP PEAK 10(5P15.33) WILD-TYPE  27 828
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 10(5P15.33) MUTATED      3   63
  AMP PEAK 10(5P15.33) WILD-TYPE   27  828
                        clus
vv                       AMP PEAK 10(5P15.33) MUTATED
  HISPANIC OR LATINO                                3
  NOT HISPANIC OR LATINO                           63
                        clus
vv                       AMP PEAK 10(5P15.33) WILD-TYPE
  HISPANIC OR LATINO                                 27
  NOT HISPANIC OR LATINO                            828
[1] 2 2
[1] FALSE

Clustering(11) Variable = AMP PEAK 11(7P11.2) MUTATION ANALYSIS
D11V1, survival
                               sevent
clus2                             0   1
  AMP PEAK 11(7P11.2) MUTATED   157 459
  AMP PEAK 11(7P11.2) WILD-TYPE 323 100
  AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE 
                          616                           423 
  AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE 
                          459                           100 
$`AMP PEAK 11(7P11.2) MUTATED`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0015 
       11.77         4.73        18.35        23.18        10.59        20.61 
TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0025 TCGA-02-0027 TCGA-02-0033 
       87.06        77.65        20.12        42.74        12.16         2.83 
TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0043 TCGA-02-0046 TCGA-02-0048 
       14.14         3.62        10.72        18.31         6.87         3.22 
TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 TCGA-02-0059 
       15.09        12.59         6.54         2.50        19.86         9.57 
TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 
       19.73        26.43        28.70        25.05         5.49        10.19 
TCGA-02-0075 TCGA-02-0079 TCGA-02-0083 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 
       20.84        27.25        22.72        51.32         8.81        57.76 
TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 
       16.96         3.48        27.02        11.67        17.65        23.18 
TCGA-02-0113 TCGA-02-0115 TCGA-02-0116 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 
       92.65        15.65        48.95        16.93        17.72        10.75 
TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 
       14.47         3.98        13.87        14.20        15.95        12.23 
TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 
        9.90         7.73        10.62         7.33        15.91        25.71 
TCGA-02-0333 TCGA-02-0337 TCGA-02-0422 TCGA-02-0430 TCGA-02-0440 TCGA-02-0446 
        4.37        25.12        14.50        10.55        11.34         9.27 
TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 TCGA-02-2485 TCGA-02-2486 
       16.21         3.35        16.80        12.92        15.45        20.32 
TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 
        2.70         6.15        20.38        47.61         6.94         3.98 
TCGA-06-0128 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 
       22.72        12.95        25.35        14.30        26.70        24.23 
TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 
       11.90         0.20        10.29         2.20        11.74         2.33 
TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 
       17.79        10.09         8.61        19.46        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0162 
       13.94        10.45         3.19        10.82         9.44         3.42 
TCGA-06-0164 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 
       56.91         5.85        19.66         3.29        13.12         4.47 
TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 TCGA-06-0179 TCGA-06-0182 
        3.22         4.04        91.00         4.18        20.25         3.65 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 
       69.90        73.84        27.22        44.58        15.42        10.42 
TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 
       38.96         4.67         7.40         5.56         0.39         7.66 
TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 
        8.42         7.63         7.40        11.84         0.53        15.02 
TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 
       24.16         0.72        13.64        13.32        20.42        48.69 
TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0412 TCGA-06-0413 
       10.82         9.01         0.26        72.36         9.57         3.16 
TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 
       35.11        12.62         5.75         5.75         9.80         2.10 
TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 
       23.57        14.20        26.40        46.88         7.86         2.70 
TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 
        2.70         0.92        43.46        46.19         5.65         7.17 
TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 
       40.41        16.57        20.78        26.76        23.93         6.84 
TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1806 
        4.04        26.79        11.84        15.32        13.61        15.32 
TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 
        1.08        12.49         4.93        17.65        12.56        30.64 
TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 
        5.95        16.64         4.37        11.74         3.55         8.35 
TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5418 TCGA-06-5856 
        4.54         8.81         8.98         8.55         2.73         3.75 
TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6390 TCGA-06-6693 TCGA-06-6694 
        6.15         4.57         5.23         5.39       120.56         7.36 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-A5U1 
        8.32        12.85         4.77         1.55         4.77         1.87 
TCGA-06-A6S0 TCGA-06-A6S1 TCGA-06-A7TK TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 
        3.12         2.56         5.39        22.68        37.84         4.18 
TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0352 
        1.74         8.42        25.71        12.16         9.80         1.28 
TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 
        8.42        17.95        24.56        31.10        37.58        22.29 
TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 
        3.39        12.23        14.93        18.02        15.35        13.97 
TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 TCGA-08-0514 TCGA-08-0518 TCGA-08-0520 
        0.72        12.56         4.27        11.08        19.33        10.75 
TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 
       15.98        18.41         7.56        15.35        14.73        12.99 
TCGA-12-0619 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 
       34.92        10.45         7.59        94.78         0.10        38.17 
TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 
       25.97        26.66        12.13         3.65        20.38        28.41 
TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 
       15.06        53.85        43.23         7.63         9.73        14.93 
TCGA-12-0780 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 
       14.86        24.79        18.48        10.62        23.51        27.78 
TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 
        8.94        20.58       127.59         5.82         7.59        33.21 
TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 
       21.73        15.98        12.23        15.85         9.11        14.53 
TCGA-12-1098 TCGA-12-1099 TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 
        3.98         4.14        15.65        25.68        14.73         6.77 
TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 
       59.77        44.02        26.93        15.22        10.95        12.69 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 
       34.92        14.53        14.93         3.22         2.04        15.12 
TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 
        0.95         6.21        23.05         2.24        11.24        13.78 
TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0866 TCGA-14-0867 
        3.25         1.35         5.39         2.89        26.33         2.04 
TCGA-14-0871 TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 
       28.93        15.95        19.30         0.79         1.38         1.12 
TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 
        3.75        32.05        58.78        23.11         7.10         1.15 
TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 
       30.18         0.92        40.96         6.67        12.43         0.99 
TCGA-14-1795 TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 
        1.97        17.85         7.63         5.88         7.17        17.49 
TCGA-14-2555 TCGA-14-4157 TCGA-15-0742 TCGA-15-1446 TCGA-15-1449 TCGA-16-0846 
        7.96         3.42        13.78        19.10        13.28         3.91 
TCGA-16-0848 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1060 
       17.59         4.31        29.03         4.57        10.29         9.14 
TCGA-16-1062 TCGA-16-1063 TCGA-19-0955 TCGA-19-0957 TCGA-19-0962 TCGA-19-0963 
       21.24        13.97        11.77        21.90         0.66        14.27 
TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 
        3.39        10.75         9.07         5.95        12.95         4.64 
TCGA-19-1390 TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 
       25.38         3.65         7.17        12.66         3.25         0.13 
TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2629 
        9.67         4.87         1.08         7.53         0.16        24.23 
TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 
        7.00         7.04         6.64        17.19         8.02        18.90 
TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 
        4.73        12.10         1.78        14.07        16.80        14.96 
TCGA-19-A60I TCGA-19-A6J4 TCGA-19-A6J5 TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 
       17.79         3.98        28.54        10.03        13.87         9.73 
TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 
        7.13         9.37         9.40         8.88        18.97         1.58 
TCGA-26-6173 TCGA-26-6174 TCGA-26-A7UX TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 
        7.92         2.33        19.33         5.06        16.60         9.86 
TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 
       24.23        40.54        21.30        30.05        14.04        11.51 
TCGA-27-2518 TCGA-27-2519 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 
       24.76        10.39        16.08         7.59         2.86        14.40 
TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 
       15.78         0.20         2.53         9.21         8.35         7.63 
TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 
        8.48         1.22         1.55         0.13         0.66         6.74 
TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 
        4.77         7.30         5.26        14.93        11.28        17.88 
TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5218 
       14.53        11.77        31.27        23.44        11.01         5.16 
TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1976 TCGA-32-1977 
       22.68        12.76         5.42        15.39         0.49         0.10 
TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 
       15.85        19.50         1.18         4.67        12.69        14.86 
TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2616 
       16.93        12.23        20.78        15.02        15.95         7.36 
TCGA-32-2632 TCGA-32-2638 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 
        8.84        25.18         3.72        12.59        19.86        10.85 
TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 
       19.23         0.85        13.35         8.94         9.53         0.99 
TCGA-41-3393 TCGA-41-3915 TCGA-41-5651 TCGA-41-6646 TCGA-4W-AA9S TCGA-4W-AA9T 
        4.44        11.84        15.12        12.46         4.14        14.76 
TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 
        3.45        20.91         4.34        14.33         8.22         7.50 
TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 
        4.80         4.54         3.09         3.65         9.17         2.53 
TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 
       10.78        16.70         3.29        11.38        17.06         8.35 
TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 
       20.98         4.83         5.03         0.23         9.27         7.73 
TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 TCGA-OX-A56R TCGA-RR-A6KA 
        7.79         1.61        17.72        26.30         5.92         6.28 
TCGA-RR-A6KC TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-5393 TCGA-CS-5395 TCGA-CS-5396 
       20.55         7.69        43.89        40.18        21.01         9.96 
TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6665 TCGA-CS-6670 TCGA-DB-5270 
        6.38        17.69        23.84        12.43         6.61       122.73 
TCGA-DB-5277 TCGA-DB-A4X9 TCGA-DB-A4XE TCGA-DB-A64O TCGA-DH-5142 TCGA-DH-A669 
       50.86        46.42        37.45        25.48        30.31        30.21 
TCGA-DH-A66G TCGA-DH-A7UT TCGA-DH-A7UV TCGA-DU-5852 TCGA-DU-5854 TCGA-DU-6392 
       17.19        13.38        18.61         6.74         8.45       211.17 
TCGA-DU-6395 TCGA-DU-6400 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 
       49.02         1.22         7.04        11.64       133.74        19.89 
TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6410 TCGA-DU-7006 TCGA-DU-7011 TCGA-DU-7012 
       16.83        94.52         7.96        11.47       105.21         6.54 
TCGA-DU-7013 TCGA-DU-7014 TCGA-DU-7015 TCGA-DU-7292 TCGA-DU-8158 TCGA-DU-8161 
        8.84       117.40        90.77         7.96         5.10        23.74 
TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-A5TR TCGA-DU-A5TT 
       14.60        20.68        19.13        16.96        12.59         4.96 
TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A7TA 
        3.65         5.65        12.20        11.41        26.76        77.88 
TCGA-DU-A7TD TCGA-DU-A7TJ TCGA-E1-5304 TCGA-E1-5322 TCGA-FG-5962 TCGA-FG-6688 
        7.50         0.56        41.13       130.78        47.77        18.77 
TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7643 TCGA-FG-8182 TCGA-FG-A4MU 
       23.97        18.44        15.35        20.09        13.68        10.72 
TCGA-FG-A4MW TCGA-FG-A70Z TCGA-FG-A87Q TCGA-HT-7473 TCGA-HT-7477 TCGA-HT-7688 
       18.38        10.78         5.72        16.54        24.26        31.69 
TCGA-HT-7860 TCGA-HT-7882 TCGA-HT-8011 TCGA-HT-8013 TCGA-HT-8104 TCGA-HT-8110 
        0.49         3.72        16.24        63.55        12.23        13.78 
TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A5R5 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RC 
       15.72         0.23         0.13         0.07        27.35         5.33 
TCGA-HT-A617 TCGA-HT-A619 TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K 
       16.14        21.40        17.65         2.43        10.52        15.35 
TCGA-HW-A5KK TCGA-KT-A7W1 TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A72U TCGA-QH-A6CS 
       12.76        14.40         2.30         4.11         0.16        19.33 
TCGA-QH-A6CV TCGA-QH-A6CX TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-RY-A845 
       14.53        12.23         1.91        16.50         5.03        19.59 
TCGA-S9-A6TY TCGA-S9-A6U0 TCGA-S9-A6WM TCGA-S9-A7IQ TCGA-S9-A7IX TCGA-S9-A7IZ 
       31.33        22.95        19.86        36.13        22.32         7.13 
TCGA-S9-A7J0 TCGA-S9-A7R2 TCGA-TM-A7C3 TCGA-TM-A7CA TCGA-TM-A84B TCGA-TM-A84H 
       20.02        10.39        49.45        34.78        24.92        30.44 
TCGA-TM-A84M TCGA-TQ-A7RH TCGA-VW-A8FI TCGA-WY-A85E 
       24.79        15.98         8.05        20.81 

$`AMP PEAK 11(7P11.2) WILD-TYPE`
TCGA-02-0010 TCGA-02-0011 TCGA-02-0014 TCGA-02-0024 TCGA-02-0026 TCGA-02-0028 
       35.41        20.71        82.59        53.10        24.59        90.58 
TCGA-02-0039 TCGA-02-0047 TCGA-02-0058 TCGA-02-0060 TCGA-02-0080 TCGA-02-0084 
       10.52        14.73         8.35         6.02        89.72        12.62 
TCGA-02-0104 TCGA-02-0114 TCGA-02-0258 TCGA-02-0338 TCGA-02-0339 TCGA-02-0432 
       65.00        99.98        16.54        10.59        12.39        47.11 
TCGA-02-2483 TCGA-06-0129 TCGA-06-0146 TCGA-06-0160 TCGA-06-0165 TCGA-06-0178 
       15.32        33.67        20.09        11.80        10.65        88.14 
TCGA-06-0221 TCGA-06-0410 TCGA-06-1805 TCGA-06-2566 TCGA-06-2569 TCGA-06-2570 
       19.82         4.70        33.90         5.98         0.43        31.50 
TCGA-06-5416 TCGA-06-6389 TCGA-06-6391 TCGA-06-6701 TCGA-06-A5U0 TCGA-06-A7TL 
        6.71         7.79         1.48         4.96         4.70         5.42 
TCGA-08-0344 TCGA-08-0350 TCGA-08-0351 TCGA-08-0512 TCGA-08-0516 TCGA-08-0517 
      115.86        29.23        65.33        42.15        19.59        58.68 
TCGA-08-0521 TCGA-08-0524 TCGA-12-0818 TCGA-12-0827 TCGA-14-0740 TCGA-14-0865 
        4.80         7.27        91.76        38.76        11.97        16.50 
TCGA-14-1821 TCGA-14-3477 TCGA-15-1444 TCGA-15-1447 TCGA-16-0849 TCGA-16-0850 
       17.79         3.78        50.53        53.19        26.07        16.37 
TCGA-16-1056 TCGA-16-1460 TCGA-19-0960 TCGA-19-2625 TCGA-19-5956 TCGA-26-1442 
       14.01         6.41         8.61         4.08        22.49        31.33 
TCGA-26-5133 TCGA-26-5134 TCGA-27-2521 TCGA-28-1756 TCGA-28-5216 TCGA-32-1973 
       14.86         5.49        10.39         2.83        13.64        21.07 
TCGA-32-2634 TCGA-32-4208 TCGA-41-4097 TCGA-76-6193 TCGA-CS-4938 TCGA-CS-4943 
       22.78        21.14         0.20         2.70         4.70        18.15 
TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5394 TCGA-CS-6290 TCGA-CS-6666 TCGA-CS-6667 
       10.62        64.64         0.10        17.95         8.48         7.56 
TCGA-CS-6668 TCGA-CS-6669 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 
        8.02         7.40        81.96        75.25        47.93        72.92 
TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4XA TCGA-DB-A4XB 
       50.17        44.52        36.56        78.28        18.84        30.21 
TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L 
       46.72        39.78        33.57        72.95        31.63        24.20 
TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V 
       30.12         5.98        31.40        27.45        27.81        29.23 
TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O 
       14.40        18.51        12.10        11.24        17.88        30.74 
TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A66B 
       16.18        19.96        31.82        14.40         8.02        42.05 
TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UU TCGA-DU-5847 
       27.81        17.19        54.25        13.12         3.45        18.02 
TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5853 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 
       14.56        17.46        13.38         6.81       182.33        18.94 
TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6396 TCGA-DU-6397 
       17.49        15.16        52.11        22.42        75.16        46.06 
TCGA-DU-6399 TCGA-DU-6401 TCGA-DU-6408 TCGA-DU-6542 TCGA-DU-7007 TCGA-DU-7008 
       65.75        87.45       114.08         7.73        62.96       156.23 
TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7294 
      138.28        14.99        30.67        26.30        10.36        94.32 
TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 
       18.94        44.02        62.01        25.91        60.30        23.31 
TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8164 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP 
       41.98         2.76        21.40        15.48        14.17        14.24 
TCGA-DU-A5TS TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 
       15.12         8.65         2.70        77.98         7.23         5.98 
TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TB TCGA-DU-A7TC 
        7.13        21.30        17.98       124.50        42.31        23.51 
TCGA-DU-A7TG TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 
       44.42        50.14        67.46        79.99        57.93       134.27 
TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-A7YO TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7Z6 
       78.21        95.57        75.02        32.45        36.82        32.35 
TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 
       14.33         0.23         0.20        25.48        34.36        36.82 
TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-7636 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-8181 
       14.93        24.99        17.88        22.55        20.61        12.95 
TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 
       14.24        16.01        20.09        14.96        22.52        32.61 
TCGA-FG-A4MT TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L 
       38.27        18.71        23.70        14.76        17.82        16.41 
TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A710 TCGA-FG-A711 
       15.02        16.44        22.26        28.54        36.66        48.69 
TCGA-FG-A713 TCGA-FG-A87N TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 
       20.45        13.58        27.52         0.10         6.67        11.54 
TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 
       40.11         0.13         0.03         3.75        17.42         6.54 
TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 
        6.38        40.34        75.19        95.93       106.95       172.77 
TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 
        4.01         5.03        29.85        23.18       122.47         4.57 
TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 
       17.29         3.16        22.06        45.99        56.09        57.60 
TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 
        0.23        14.27         0.16        16.24         0.76        44.68 
TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 
        6.05        42.74         0.10        14.96         0.10         0.10 
TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 
        2.96        17.52         6.90        14.53        39.48        19.23 
TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 
       39.09         0.23        50.63        23.61        37.15         0.33 
TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7884 TCGA-HT-7902 
        0.13         3.68         5.33        35.47        11.28        31.43 
TCGA-HT-8010 TCGA-HT-8012 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8105 
        1.64         9.40         0.10        37.87        33.01         6.25 
TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8111 TCGA-HT-8113 
        0.10         0.46         2.50         5.56         0.23        29.59 
TCGA-HT-8114 TCGA-HT-8563 TCGA-HT-A4DV TCGA-HT-A5R7 TCGA-HT-A5RB TCGA-HT-A614 
       34.19        28.27        26.04        20.22         0.10         2.70 
TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A618 TCGA-HT-A61B TCGA-HT-A74L TCGA-HT-A74O 
       16.93         1.81        16.83        17.52        11.05         0.10 
TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7493 
       29.92        19.89         8.32        19.23        40.18        35.90 
TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ 
        4.31        21.70        21.60        19.59        17.82        20.35 
TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-P5-A5EV 
       20.81        20.71        19.00        42.77        14.40         0.23 
TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 
        6.71         1.64         2.37         5.88         7.63         0.76 
TCGA-P5-A5F6 TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 
        1.28        10.42        13.25        11.64         0.20         9.01 
TCGA-P5-A733 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z 
       13.61        15.16         2.53        12.62        15.85        14.04 
TCGA-QH-A6CU TCGA-QH-A6CW TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 
       14.83        13.61         2.20         9.17        10.29        14.53 
TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML 
       16.34        16.73        11.08        12.99        88.83        94.03 
TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 
       32.65        59.38        30.87         5.46         9.90        28.08 
TCGA-RY-A843 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW 
        2.07        30.67        62.17        87.12        18.77        37.84 
TCGA-S9-A6TX TCGA-S9-A6TZ TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 
       34.49        28.70        17.62        23.64        32.61        16.08 
TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE 
       98.24        95.93         5.85       106.39        69.50        72.59 
TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WN TCGA-S9-A6WO 
       80.12        32.45        84.99        31.10        15.91        18.61 
TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IS TCGA-S9-A7IY TCGA-S9-A7J1 TCGA-S9-A7J2 
       15.16        14.07         7.92        23.51         8.19         2.04 
TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 
       17.03        15.06        13.12        28.37        13.02       169.84 
TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z 
       99.06        30.05        98.63        31.59        18.71        11.97 
TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CF TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G 
       48.33        49.32        48.39        16.18        59.05        40.64 
TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R 
       28.08        24.16        40.83        33.24        25.38        18.61 
TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RW TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA 
       14.93        23.80        26.99        43.04        30.08        13.51 
TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M 
        0.10         7.89        35.93        23.47        37.05        16.01 
TCGA-VW-A7QS TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A 
       23.21        51.06        13.32        43.96        39.88        43.40 
TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D 
       45.80        46.88        37.71 

  AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE 
                         0.07                          0.03 
  AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE 
                       211.17                        182.33 
  AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE 
                        12.23                         19.00 
[1] "0.1 - 211.2 (12.2)" "0.0 - 182.3 (19.0)"
[1] "hr=" "5.4"
D11V2, continuous
D11V3, binary
                               cls
clus                              0   1
  AMP PEAK 11(7P11.2) MUTATED   500 117
  AMP PEAK 11(7P11.2) WILD-TYPE  70 355
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 11(7P11.2) MUTATED    500  117
  AMP PEAK 11(7P11.2) WILD-TYPE   70  355
                        clus
vv                       AMP PEAK 11(7P11.2) MUTATED
  BRAIN                                          500
  CENTRAL NERVOUS SYSTEM                         117
                        clus
vv                       AMP PEAK 11(7P11.2) WILD-TYPE
  BRAIN                                             70
  CENTRAL NERVOUS SYSTEM                           355
[1] 2 2
[1] FALSE
D11V4, binary
                               cls
clus                              0   1
  AMP PEAK 11(7P11.2) MUTATED   248 369
  AMP PEAK 11(7P11.2) WILD-TYPE 182 243
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 11(7P11.2) MUTATED    248  369
  AMP PEAK 11(7P11.2) WILD-TYPE  182  243
        clus
vv       AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE
  FEMALE                         248                           182
  MALE                           369                           243
[1] 2 2
[1] FALSE
D11V5, continuous
                               vv
clus                            ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  AMP PEAK 11(7P11.2) MUTATED            52                            22
  AMP PEAK 11(7P11.2) WILD-TYPE         124                             5
                               vv
clus                            OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  AMP PEAK 11(7P11.2) MUTATED                 31                34
  AMP PEAK 11(7P11.2) WILD-TYPE               87               144
                               vv
clus                            TREATED PRIMARY GBM
  AMP PEAK 11(7P11.2) MUTATED                    13
  AMP PEAK 11(7P11.2) WILD-TYPE                   5
                               vv
clus                            UNTREATED PRIMARY (DE NOVO) GBM
  AMP PEAK 11(7P11.2) MUTATED                               465
  AMP PEAK 11(7P11.2) WILD-TYPE                              60
D11V6, multiclass
                                 clus
vv                                AMP PEAK 11(7P11.2) MUTATED
  ASTROCYTOMA                                              52
  GLIOBLASTOMA MULTIFORME (GBM)                            22
  OLIGOASTROCYTOMA                                         31
  OLIGODENDROGLIOMA                                        34
  TREATED PRIMARY GBM                                      13
  UNTREATED PRIMARY (DE NOVO) GBM                         465
                                 clus
vv                                AMP PEAK 11(7P11.2) WILD-TYPE
  ASTROCYTOMA                                               124
  GLIOBLASTOMA MULTIFORME (GBM)                               5
  OLIGOASTROCYTOMA                                           87
  OLIGODENDROGLIOMA                                         144
  TREATED PRIMARY GBM                                         5
  UNTREATED PRIMARY (DE NOVO) GBM                            60
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D11V7, binary
                               cls
clus                              0   1
  AMP PEAK 11(7P11.2) MUTATED   355 262
  AMP PEAK 11(7P11.2) WILD-TYPE 119 306
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 11(7P11.2) MUTATED    355  262
  AMP PEAK 11(7P11.2) WILD-TYPE  119  306
     clus
vv    AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE
  NO                          355                           119
  YES                         262                           306
[1] 2 2
[1] FALSE
                               vv
clus                            AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK 11(7P11.2) MUTATED                                  1    12
  AMP PEAK 11(7P11.2) WILD-TYPE                                0     9
                               vv
clus                            BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 11(7P11.2) MUTATED                          50   531
  AMP PEAK 11(7P11.2) WILD-TYPE                        14   391
D11V8, multiclass
                                  clus
vv                                 AMP PEAK 11(7P11.2) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                           1
  ASIAN                                                     12
  BLACK OR AFRICAN AMERICAN                                 50
  WHITE                                                    531
                                  clus
vv                                 AMP PEAK 11(7P11.2) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                             0
  ASIAN                                                        9
  BLACK OR AFRICAN AMERICAN                                   14
  WHITE                                                      391
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D11V9, binary
                               cls
clus                              0   1
  AMP PEAK 11(7P11.2) MUTATED    13 518
  AMP PEAK 11(7P11.2) WILD-TYPE  17 373
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 11(7P11.2) MUTATED     13  518
  AMP PEAK 11(7P11.2) WILD-TYPE   17  373
                        clus
vv                       AMP PEAK 11(7P11.2) MUTATED
  HISPANIC OR LATINO                              13
  NOT HISPANIC OR LATINO                         518
                        clus
vv                       AMP PEAK 11(7P11.2) WILD-TYPE
  HISPANIC OR LATINO                                17
  NOT HISPANIC OR LATINO                           373
[1] 2 2
[1] FALSE

Clustering(12) Variable = AMP PEAK 12(7Q11.21) MUTATION ANALYSIS
D12V1, survival
                                sevent
clus2                              0   1
  AMP PEAK 12(7Q11.21) MUTATED   149 416
  AMP PEAK 12(7Q11.21) WILD-TYPE 331 143
  AMP PEAK 12(7Q11.21) MUTATED AMP PEAK 12(7Q11.21) WILD-TYPE 
                           565                            474 
  AMP PEAK 12(7Q11.21) MUTATED AMP PEAK 12(7Q11.21) WILD-TYPE 
                           416                            143 
$`AMP PEAK 12(7Q11.21) MUTATED`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0015 
       11.77         4.73        18.35        23.18        10.59        20.61 
TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0025 TCGA-02-0027 TCGA-02-0033 
       87.06        77.65        20.12        42.74        12.16         2.83 
TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0046 TCGA-02-0048 TCGA-02-0051 
       14.14         3.62        10.72         6.87         3.22        15.09 
TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 TCGA-02-0059 TCGA-02-0064 
       12.59         6.54         2.50        19.86         9.57        19.73 
TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0085 
       25.05         5.49        10.19        20.84        27.25        51.32 
TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0106 
        8.81        57.76        16.96         3.48        27.02        11.67 
TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 TCGA-02-0115 TCGA-02-0116 TCGA-02-0260 
       17.65        23.18        92.65        15.65        48.95        16.93 
TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 
       17.72        10.75        14.47         3.98        13.87        14.20 
TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 
       15.95        12.23         9.90         7.73        10.62         7.33 
TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0430 TCGA-02-0440 
       15.91        25.71         4.37        25.12        10.55        11.34 
TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 TCGA-02-2485 
        9.27        16.21         3.35        16.80        12.92        15.45 
TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 
       20.32         2.70         6.15        20.38        47.61         6.94 
TCGA-06-0128 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0138 TCGA-06-0139 
       22.72        12.95        25.35        14.30        24.23        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0143 TCGA-06-0145 TCGA-06-0147 TCGA-06-0148 
        0.20        10.29        11.74         2.33        17.79        10.09 
TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 TCGA-06-0155 TCGA-06-0157 
        8.61        19.46        46.59        12.33        10.45         3.19 
TCGA-06-0158 TCGA-06-0159 TCGA-06-0164 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 
       10.82         9.44        56.91         5.85        19.66         3.29 
TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 
       13.12         4.47         3.22         4.04        91.00         4.18 
TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 
       20.25         3.65        69.90        73.84        44.58        15.42 
TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 
       10.42        38.96         4.67         7.40         5.56         0.39 
TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 
        7.66         8.42         7.63         7.40        11.84         0.53 
TCGA-06-0214 TCGA-06-0216 TCGA-06-0237 TCGA-06-0238 TCGA-06-0241 TCGA-06-0394 
       15.02        24.16        13.64        13.32        48.69        10.82 
TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 
        9.01         0.26        72.36         9.57         3.16        35.11 
TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 
       12.62         5.75         5.75         9.80         2.10        23.57 
TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0749 TCGA-06-0750 
       14.20        26.40        46.88         7.86         2.70         0.92 
TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 
       43.46        46.19         5.65         7.17        40.41        16.57 
TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1087 TCGA-06-1800 
       20.78        26.76        23.93         6.84         4.04        26.79 
TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 
       11.84        15.32        13.61        15.32         1.08        12.49 
TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2567 
        4.93        17.65        12.56        30.64         5.95         4.37 
TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 
        3.55         8.35         4.54         8.81         8.98         8.55 
TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6390 
        2.73         3.75         6.15         4.57         5.23         5.39 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.32        12.85         4.77         1.55         4.77 
TCGA-06-A5U1 TCGA-06-A6S1 TCGA-06-A7TK TCGA-08-0244 TCGA-08-0345 TCGA-08-0346 
        1.87         2.56         5.39        22.68         1.74         8.42 
TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0352 TCGA-08-0354 TCGA-08-0355 
       25.71        12.16         9.80         1.28        17.95        24.56 
TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 
       31.10        37.58        22.29         3.39        12.23        14.93 
TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 
       18.02        15.35        13.97         0.72        12.56         4.27 
TCGA-08-0518 TCGA-08-0520 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 
       19.33        10.75        15.98        18.41         7.56        15.35 
TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 
       14.73        12.99        34.92        10.45         7.59        94.78 
TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 
        0.10        38.17        25.97        12.13         3.65        20.38 
TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 
       28.41        15.06        53.85        43.23         7.63         9.73 
TCGA-12-0778 TCGA-12-0780 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 
       14.93        14.86        18.48        10.62        23.51        27.78 
TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 
        8.94        20.58       127.59         5.82         7.59        33.21 
TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 
       21.73        15.98        12.23        15.85         9.11        14.53 
TCGA-12-1098 TCGA-12-1099 TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 
        3.98         4.14        15.65        25.68        14.73         6.77 
TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 
       59.77        44.02        26.93        15.22        10.95        12.69 
TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0781 
       14.53        14.93         3.22         2.04        15.12         0.95 
TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 
        6.21        23.05         2.24        11.24        13.78         3.25 
TCGA-14-0813 TCGA-14-0866 TCGA-14-0867 TCGA-14-0871 TCGA-14-1034 TCGA-14-1037 
        1.35        26.33         2.04        28.93        15.95        19.30 
TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 
        0.79         1.38         1.12         3.75        32.05        58.78 
TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 TCGA-14-1458 
       23.11         7.10         1.15        30.18         0.92         6.67 
TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 
       12.43         0.99         1.97        17.85         7.63         5.88 
TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-4157 TCGA-15-0742 TCGA-15-1446 
        7.17        17.49         7.96         3.42        13.78        19.10 
TCGA-15-1449 TCGA-16-0846 TCGA-16-0848 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 
       13.28         3.91        17.59         4.31        29.03         4.57 
TCGA-16-1055 TCGA-16-1062 TCGA-16-1063 TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 
       10.29        21.24        13.97        11.77        21.90         8.61 
TCGA-19-0962 TCGA-19-0963 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 
        0.66        14.27        10.75         9.07         5.95        12.95 
TCGA-19-1389 TCGA-19-1390 TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 TCGA-19-1791 
        4.64        25.38         3.65         7.17        12.66         0.13 
TCGA-19-2619 TCGA-19-2623 TCGA-19-2624 TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 
        9.67         7.53         0.16        24.23         7.00         7.04 
TCGA-19-5947 TCGA-19-5950 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 
        6.64        17.19        18.90         4.73        12.10         1.78 
TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-19-A60I TCGA-19-A6J4 TCGA-19-A6J5 
       14.07        16.80        14.96        17.79         3.98        28.54 
TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 TCGA-26-1443 TCGA-26-5132 TCGA-26-5135 
       10.03        13.87         9.73         7.13         9.40         8.88 
TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-26-A7UX TCGA-27-1830 
       18.97         1.58         7.92         2.33        19.33         5.06 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1838 
       16.60         9.86        24.23        40.54        21.30        11.51 
TCGA-27-2518 TCGA-27-2519 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 
       24.76        10.39         7.59         2.86        14.40        15.78 
TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 
        0.20         2.53         9.21         8.35         7.63         8.48 
TCGA-28-1753 TCGA-28-1755 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 
        1.22         1.55         0.13         0.66         6.74         4.77 
TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5211 
        7.30         5.26        14.93        11.28        17.88        11.77 
TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 
       31.27        23.44        11.01         5.16        22.68        12.76 
TCGA-28-6450 TCGA-32-1970 TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 
        5.42        15.39         0.49         0.10        15.85        19.50 
TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 
        1.18         4.67        12.69        14.86        16.93        12.23 
TCGA-32-2494 TCGA-32-2615 TCGA-32-2616 TCGA-32-2632 TCGA-32-2638 TCGA-32-4210 
       20.78        15.95         7.36         8.84        25.18         3.72 
TCGA-32-4211 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 
       12.59        19.23         0.85        13.35         8.94         9.53 
TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-5651 TCGA-41-6646 TCGA-4W-AA9S 
        0.99         4.44        11.84        15.12        12.46         4.14 
TCGA-4W-AA9T TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 
       14.76         3.45        20.91         4.34        14.33         8.22 
TCGA-74-6584 TCGA-76-4925 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 
        7.50         4.80         3.09         3.65         9.17         2.53 
TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 
       10.78        16.70         3.29        11.38        17.06         8.35 
TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 
       20.98         4.83         5.03         0.23         9.27         7.73 
TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 TCGA-OX-A56R TCGA-RR-A6KA 
        7.79         1.61        17.72        26.30         5.92         6.28 
TCGA-RR-A6KC TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 
       20.55         7.69        43.89        21.01         9.96         6.38 
TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6665 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5277 
       17.69        23.84        12.43         6.61       122.73        50.86 
TCGA-DB-A4X9 TCGA-DB-A4XE TCGA-DB-A64O TCGA-DH-A669 TCGA-DH-A66G TCGA-DH-A7UT 
       46.42        37.45        25.48        30.21        17.19        13.38 
TCGA-DH-A7UV TCGA-DU-5854 TCGA-DU-6392 TCGA-DU-6395 TCGA-DU-6400 TCGA-DU-6402 
       18.61         8.45       211.17        49.02         1.22         7.04 
TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6410 
       11.64       133.74        19.89        16.83        94.52         7.96 
TCGA-DU-7006 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7014 TCGA-DU-7292 
       11.47       105.21         6.54         8.84       117.40         7.96 
TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-A5TR 
       23.74        14.60        20.68        19.13        16.96        12.59 
TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A76K TCGA-DU-A76L 
        4.96         3.65         5.65        12.20        11.41        26.76 
TCGA-DU-A7TA TCGA-DU-A7TD TCGA-DU-A7TJ TCGA-E1-5304 TCGA-E1-5322 TCGA-FG-5962 
       77.88         7.50         0.56        41.13       130.78        47.77 
TCGA-FG-6688 TCGA-FG-6691 TCGA-FG-7634 TCGA-FG-7643 TCGA-FG-8182 TCGA-FG-A4MU 
       18.77        23.97        15.35        20.09        13.68        10.72 
TCGA-FG-A4MW TCGA-FG-A70Z TCGA-FG-A87Q TCGA-HT-7473 TCGA-HT-7688 TCGA-HT-7860 
       18.38        10.78         5.72        16.54        31.69         0.49 
TCGA-HT-7882 TCGA-HT-8011 TCGA-HT-8013 TCGA-HT-8104 TCGA-HT-8110 TCGA-HT-8564 
        3.72        16.24        63.55        12.23        13.78        15.72 
TCGA-HT-A4DS TCGA-HT-A5R5 TCGA-HT-A5R9 TCGA-HT-A5RC TCGA-HT-A616 TCGA-HT-A617 
        0.23         0.13         0.07         5.33         1.81        16.14 
TCGA-HT-A619 TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-KT-A7W1 
       21.40        17.65         2.43        10.52        15.35        14.40 
TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A72U TCGA-QH-A6CS TCGA-QH-A6CV TCGA-QH-A6X9 
        2.30         4.11         0.16        19.33        14.53         1.91 
TCGA-QH-A6XA TCGA-QH-A6XC TCGA-RY-A845 TCGA-S9-A6TY TCGA-S9-A6U0 TCGA-S9-A6WM 
       16.50         5.03        19.59        31.33        22.95        19.86 
TCGA-S9-A7IQ TCGA-S9-A7IX TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7R2 TCGA-TM-A7C3 
       36.13        22.32         7.13        20.02        10.39        49.45 
TCGA-TM-A7CA TCGA-TM-A84B TCGA-TM-A84H TCGA-TM-A84M TCGA-TQ-A7RH TCGA-VW-A8FI 
       34.78        24.92        30.44        24.79        15.98         8.05 
TCGA-WY-A85E 
       20.81 

$`AMP PEAK 12(7Q11.21) WILD-TYPE`
TCGA-02-0010 TCGA-02-0011 TCGA-02-0014 TCGA-02-0024 TCGA-02-0026 TCGA-02-0028 
       35.41        20.71        82.59        53.10        24.59        90.58 
TCGA-02-0039 TCGA-02-0043 TCGA-02-0047 TCGA-02-0058 TCGA-02-0060 TCGA-02-0068 
       10.52        18.31        14.73         8.35         6.02        26.43 
TCGA-02-0069 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 TCGA-02-0104 TCGA-02-0114 
       28.70        89.72        22.72        12.62        65.00        99.98 
TCGA-02-0258 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0432 TCGA-02-2483 
       16.54        10.59        12.39        14.50        47.11        15.32 
TCGA-06-0127 TCGA-06-0129 TCGA-06-0137 TCGA-06-0142 TCGA-06-0146 TCGA-06-0154 
        3.98        33.67        26.70         2.20        20.09        13.94 
TCGA-06-0160 TCGA-06-0162 TCGA-06-0165 TCGA-06-0178 TCGA-06-0187 TCGA-06-0219 
       11.80         3.42        10.65        88.14        27.22         0.72 
TCGA-06-0221 TCGA-06-0240 TCGA-06-0410 TCGA-06-0747 TCGA-06-1805 TCGA-06-2565 
       19.82        20.42         4.70         2.70        33.90        16.64 
TCGA-06-2566 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 TCGA-06-5416 TCGA-06-6389 
        5.98         0.43        31.50        11.74         6.71         7.79 
TCGA-06-6391 TCGA-06-6693 TCGA-06-6701 TCGA-06-A5U0 TCGA-06-A6S0 TCGA-06-A7TL 
        1.48       120.56         4.96         4.70         3.12         5.42 
TCGA-08-0245 TCGA-08-0246 TCGA-08-0344 TCGA-08-0350 TCGA-08-0351 TCGA-08-0353 
       37.84         4.18       115.86        29.23        65.33         8.42 
TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 TCGA-08-0521 TCGA-08-0524 
       42.15        11.08        19.59        58.68         4.80         7.27 
TCGA-12-0688 TCGA-12-0818 TCGA-12-0819 TCGA-12-0827 TCGA-12-3652 TCGA-14-0740 
       26.66        91.76        24.79        38.76        34.92        11.97 
TCGA-14-0817 TCGA-14-0862 TCGA-14-0865 TCGA-14-1456 TCGA-14-1821 TCGA-14-3477 
        5.39         2.89        16.50        40.96        17.79         3.78 
TCGA-15-1444 TCGA-15-1447 TCGA-16-0849 TCGA-16-0850 TCGA-16-1056 TCGA-16-1060 
       50.53        53.19        26.07        16.37        14.01         9.14 
TCGA-16-1460 TCGA-19-0964 TCGA-19-1789 TCGA-19-2620 TCGA-19-2621 TCGA-19-2625 
        6.41         3.39         3.25         4.87         1.08         4.08 
TCGA-19-5951 TCGA-19-5956 TCGA-26-1442 TCGA-26-1799 TCGA-26-5133 TCGA-26-5134 
        8.02        22.49        31.33         9.37        14.86         5.49 
TCGA-27-1836 TCGA-27-1837 TCGA-27-2521 TCGA-27-2523 TCGA-28-1756 TCGA-28-5209 
       30.05        14.04        10.39        16.08         2.83        14.53 
TCGA-28-5216 TCGA-32-1973 TCGA-32-2495 TCGA-32-2634 TCGA-32-4208 TCGA-32-4213 
       13.64        21.07        15.02        22.78        21.14        19.86 
TCGA-32-4719 TCGA-41-4097 TCGA-76-4926 TCGA-76-6193 TCGA-CS-4938 TCGA-CS-4943 
       10.85         0.20         4.54         2.70         4.70        18.15 
TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-6290 TCGA-CS-6666 
       10.62        64.64        40.18         0.10        17.95         8.48 
TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 
        7.56         8.02         7.40        81.96        75.25        47.93 
TCGA-DB-5276 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4XA 
       72.92        50.17        44.52        36.56        78.28        18.84 
TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH 
       30.21        46.72        39.78        33.57        72.95        31.63 
TCGA-DB-A64L TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U 
       24.20        30.12         5.98        31.40        27.45        27.81 
TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M 
       29.23        14.40        18.51        12.10        11.24        17.88 
TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 
       30.74        16.18        19.96        31.82        30.31        14.40 
TCGA-DH-5144 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A7UR TCGA-DH-A7US 
        8.02        42.05        27.81        17.19        54.25        13.12 
TCGA-DH-A7UU TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 
        3.45        18.02        14.56        17.46         6.74        13.38 
TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6393 
        6.81       182.33        18.94        17.49        15.16        52.11 
TCGA-DU-6394 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6401 TCGA-DU-6408 
       22.42        75.16        46.06        65.75        87.45       114.08 
TCGA-DU-6542 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7015 
        7.73        62.96       156.23       138.28        14.99        90.77 
TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 
       30.67        26.30        10.36        94.32        18.94        44.02 
TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 
       62.01        25.91        60.30        23.31        41.98         2.76 
TCGA-DU-8158 TCGA-DU-8164 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TS 
        5.10        21.40        15.48        14.17        14.24        15.12 
TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76O 
        8.65         2.70        77.98         7.23         5.98         7.13 
TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TG 
       21.30        17.98       124.50        42.31        23.51        44.42 
TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 
       50.14        67.46        79.99        57.93       134.27        78.21 
TCGA-E1-5319 TCGA-E1-A7YO TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7Z6 TCGA-EZ-7264 
       95.57        75.02        32.45        36.82        32.35        14.33 
TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6689 
        0.23         0.20        25.48        34.36        36.82        14.93 
TCGA-FG-6690 TCGA-FG-6692 TCGA-FG-7636 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-8181 
       24.99        18.44        17.88        22.55        20.61        12.95 
TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 
       14.24        16.01        20.09        14.96        22.52        32.61 
TCGA-FG-A4MT TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L 
       38.27        18.71        23.70        14.76        17.82        16.41 
TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A710 TCGA-FG-A711 
       15.02        16.44        22.26        28.54        36.66        48.69 
TCGA-FG-A713 TCGA-FG-A87N TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 
       20.45        13.58        27.52         0.10         6.67        11.54 
TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 
       40.11         0.13         0.03         3.75        17.42         6.54 
TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 
       24.26         6.38        40.34        75.19        95.93       106.95 
TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 
      172.77         4.01         5.03        29.85        23.18       122.47 
TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 
        4.57        17.29         3.16        22.06        45.99        56.09 
TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 
       57.60         0.23        14.27         0.16        16.24         0.76 
TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7689 TCGA-HT-7690 
       44.68         6.05        42.74         0.10        14.96         0.10 
TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 
        0.10         2.96        17.52         6.90        14.53        39.48 
TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7873 TCGA-HT-7874 
       19.23        39.09         0.23        50.63        23.61        37.15 
TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7884 
        0.33         0.13         3.68         5.33        35.47        11.28 
TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8012 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 
       31.43         1.64         9.40         0.10        37.87        33.01 
TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8111 
        6.25         0.10         0.46         2.50         5.56         0.23 
TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8563 TCGA-HT-A4DV TCGA-HT-A5R7 TCGA-HT-A5RA 
       29.59        34.19        28.27        26.04        20.22        27.35 
TCGA-HT-A5RB TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A618 TCGA-HT-A61B TCGA-HT-A74L 
        0.10         2.70        16.93        16.83        17.52        11.05 
TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 
        0.10        29.92        19.89         8.32        19.23        40.18 
TCGA-HW-7493 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 
       35.90         4.31        21.70        21.60        19.59        17.82 
TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 
       20.35        12.76        20.81        20.71        19.00        42.77 
TCGA-KT-A74X TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5F1 
       14.40         0.23         6.71         1.64         2.37         5.88 
TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z 
        7.63         0.76         1.28        10.42        13.25        11.64 
TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V 
        0.20         9.01        13.61        15.16         2.53        12.62 
TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CU TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY 
       15.85        14.04        14.83        13.61        12.23         2.20 
TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A86X 
        9.17        10.29        14.53        16.34        16.73        11.08 
TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X 
       12.99        88.83        94.03        32.65        59.38        30.87 
TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A847 TCGA-S9-A6TS 
        5.46         9.90        28.08         2.07        30.67        62.17 
TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TZ TCGA-S9-A6U1 
       87.12        18.77        37.84        34.49        28.70        17.62 
TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA 
       23.64        32.61        16.08        98.24        95.93         5.85 
TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI 
      106.39        69.50        72.59        80.12        32.45        84.99 
TCGA-S9-A6WL TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IS 
       31.10        15.91        18.61        15.16        14.07         7.92 
TCGA-S9-A7IY TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX 
       23.51         8.19         2.04        17.03        15.06        13.12 
TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 
       28.37        13.02       169.84        99.06        30.05        98.63 
TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CF 
       31.59        18.71        11.97        48.33        49.32        48.39 
TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L 
       16.18        59.05        40.64        28.08        24.16        40.83 
TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RW 
       33.24        25.38        18.61        14.93        23.80        26.99 
TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE 
       43.04        30.08        13.51         0.10         7.89        35.93 
TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-W9-A837 TCGA-WH-A86K 
       23.47        37.05        16.01        23.21        51.06        13.32 
TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D 
       43.96        39.88        43.40        45.80        46.88        37.71 

  AMP PEAK 12(7Q11.21) MUTATED AMP PEAK 12(7Q11.21) WILD-TYPE 
                          0.07                           0.03 
  AMP PEAK 12(7Q11.21) MUTATED AMP PEAK 12(7Q11.21) WILD-TYPE 
                        211.17                         182.33 
  AMP PEAK 12(7Q11.21) MUTATED AMP PEAK 12(7Q11.21) WILD-TYPE 
                         12.16                          18.66 
[1] "0.1 - 211.2 (12.2)" "0.0 - 182.3 (18.7)"
[1] "hr=" "4.1"
D12V2, continuous
D12V3, binary
                                cls
clus                               0   1
  AMP PEAK 12(7Q11.21) MUTATED   458 108
  AMP PEAK 12(7Q11.21) WILD-TYPE 112 364
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 12(7Q11.21) MUTATED    458  108
  AMP PEAK 12(7Q11.21) WILD-TYPE  112  364
                        clus
vv                       AMP PEAK 12(7Q11.21) MUTATED
  BRAIN                                           458
  CENTRAL NERVOUS SYSTEM                          108
                        clus
vv                       AMP PEAK 12(7Q11.21) WILD-TYPE
  BRAIN                                             112
  CENTRAL NERVOUS SYSTEM                            364
[1] 2 2
[1] FALSE
D12V4, binary
                                cls
clus                               0   1
  AMP PEAK 12(7Q11.21) MUTATED   227 339
  AMP PEAK 12(7Q11.21) WILD-TYPE 203 273
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 12(7Q11.21) MUTATED    227  339
  AMP PEAK 12(7Q11.21) WILD-TYPE  203  273
        clus
vv       AMP PEAK 12(7Q11.21) MUTATED AMP PEAK 12(7Q11.21) WILD-TYPE
  FEMALE                          227                            203
  MALE                            339                            273
[1] 2 2
[1] FALSE
D12V5, continuous
                                vv
clus                             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  AMP PEAK 12(7Q11.21) MUTATED            46                            19
  AMP PEAK 12(7Q11.21) WILD-TYPE         130                             8
                                vv
clus                             OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  AMP PEAK 12(7Q11.21) MUTATED                 30                32
  AMP PEAK 12(7Q11.21) WILD-TYPE               88               146
                                vv
clus                             TREATED PRIMARY GBM
  AMP PEAK 12(7Q11.21) MUTATED                    10
  AMP PEAK 12(7Q11.21) WILD-TYPE                   8
                                vv
clus                             UNTREATED PRIMARY (DE NOVO) GBM
  AMP PEAK 12(7Q11.21) MUTATED                               429
  AMP PEAK 12(7Q11.21) WILD-TYPE                              96
D12V6, multiclass
                                 clus
vv                                AMP PEAK 12(7Q11.21) MUTATED
  ASTROCYTOMA                                               46
  GLIOBLASTOMA MULTIFORME (GBM)                             19
  OLIGOASTROCYTOMA                                          30
  OLIGODENDROGLIOMA                                         32
  TREATED PRIMARY GBM                                       10
  UNTREATED PRIMARY (DE NOVO) GBM                          429
                                 clus
vv                                AMP PEAK 12(7Q11.21) WILD-TYPE
  ASTROCYTOMA                                                130
  GLIOBLASTOMA MULTIFORME (GBM)                                8
  OLIGOASTROCYTOMA                                            88
  OLIGODENDROGLIOMA                                          146
  TREATED PRIMARY GBM                                          8
  UNTREATED PRIMARY (DE NOVO) GBM                             96
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D12V7, binary
                                cls
clus                               0   1
  AMP PEAK 12(7Q11.21) MUTATED   323 243
  AMP PEAK 12(7Q11.21) WILD-TYPE 151 325
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 12(7Q11.21) MUTATED    323  243
  AMP PEAK 12(7Q11.21) WILD-TYPE  151  325
     clus
vv    AMP PEAK 12(7Q11.21) MUTATED AMP PEAK 12(7Q11.21) WILD-TYPE
  NO                           323                            151
  YES                          243                            325
[1] 2 2
[1] FALSE
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK 12(7Q11.21) MUTATED                                  1    10
  AMP PEAK 12(7Q11.21) WILD-TYPE                                0    11
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 12(7Q11.21) MUTATED                          47   485
  AMP PEAK 12(7Q11.21) WILD-TYPE                        17   437
D12V8, multiclass
                                  clus
vv                                 AMP PEAK 12(7Q11.21) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            1
  ASIAN                                                      10
  BLACK OR AFRICAN AMERICAN                                  47
  WHITE                                                     485
                                  clus
vv                                 AMP PEAK 12(7Q11.21) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              0
  ASIAN                                                        11
  BLACK OR AFRICAN AMERICAN                                    17
  WHITE                                                       437
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D12V9, binary
                                cls
clus                               0   1
  AMP PEAK 12(7Q11.21) MUTATED    12 475
  AMP PEAK 12(7Q11.21) WILD-TYPE  18 416
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 12(7Q11.21) MUTATED     12  475
  AMP PEAK 12(7Q11.21) WILD-TYPE   18  416
                        clus
vv                       AMP PEAK 12(7Q11.21) MUTATED
  HISPANIC OR LATINO                               12
  NOT HISPANIC OR LATINO                          475
                        clus
vv                       AMP PEAK 12(7Q11.21) WILD-TYPE
  HISPANIC OR LATINO                                 18
  NOT HISPANIC OR LATINO                            416
[1] 2 2
[1] FALSE

Clustering(13) Variable = AMP PEAK 13(7Q21.2) MUTATION ANALYSIS
D13V1, survival
                               sevent
clus2                             0   1
  AMP PEAK 13(7Q21.2) MUTATED   182 437
  AMP PEAK 13(7Q21.2) WILD-TYPE 298 122
  AMP PEAK 13(7Q21.2) MUTATED AMP PEAK 13(7Q21.2) WILD-TYPE 
                          619                           420 
  AMP PEAK 13(7Q21.2) MUTATED AMP PEAK 13(7Q21.2) WILD-TYPE 
                          437                           122 
$`AMP PEAK 13(7Q21.2) MUTATED`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0009 TCGA-02-0015 TCGA-02-0016 
       11.77         4.73        18.35        10.59        20.61        87.06 
TCGA-02-0021 TCGA-02-0023 TCGA-02-0025 TCGA-02-0027 TCGA-02-0033 TCGA-02-0034 
       77.65        20.12        42.74        12.16         2.83        14.14 
TCGA-02-0037 TCGA-02-0038 TCGA-02-0043 TCGA-02-0046 TCGA-02-0048 TCGA-02-0051 
        3.62        10.72        18.31         6.87         3.22        15.09 
TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 TCGA-02-0059 TCGA-02-0064 
       12.59         6.54         2.50        19.86         9.57        19.73 
TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0080 TCGA-02-0083 
       25.05         5.49        10.19        20.84        89.72        22.72 
TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 
       51.32         8.81        57.76        16.96         3.48        27.02 
TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 TCGA-02-0115 TCGA-02-0116 
       11.67        17.65        23.18        92.65        15.65        48.95 
TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 
       16.54        16.93        17.72        10.75        14.47         3.98 
TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 
       13.87        14.20        15.95        12.23         9.90         7.73 
TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0337 TCGA-02-0422 
       10.62         7.33        15.91        25.71        25.12        14.50 
TCGA-02-0430 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 
       10.55        11.34         9.27        16.21         3.35        16.80 
TCGA-02-2470 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0124 TCGA-06-0125 
       12.92        15.45        20.32         2.70        20.38        47.61 
TCGA-06-0126 TCGA-06-0128 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 
        6.94        22.72        12.95        25.35        14.30        26.70 
TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0143 TCGA-06-0145 
       24.23        11.90         0.20        10.29        11.74         2.33 
TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 
       17.79        10.09         8.61        19.46        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0162 
       13.94        10.45         3.19        10.82         9.44         3.42 
TCGA-06-0164 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 
       56.91         5.85        19.66         3.29        13.12         4.47 
TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 TCGA-06-0179 TCGA-06-0182 
        3.22         4.04        91.00         4.18        20.25         3.65 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 
       69.90        73.84        27.22        44.58        15.42        10.42 
TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 
       38.96         4.67         7.40         5.56         0.39         7.66 
TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 
        8.42         7.63         7.40        11.84         0.53        15.02 
TCGA-06-0216 TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 TCGA-06-0241 TCGA-06-0394 
       24.16        19.82        13.64        13.32        48.69        10.82 
TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 
        9.01         0.26        72.36         9.57         3.16        35.11 
TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 
       12.62         5.75         5.75         9.80         2.10        23.57 
TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 
       14.20        26.40        46.88         7.86         2.70         2.70 
TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 
        0.92        43.46        46.19         5.65         7.17        40.41 
TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1087 
       16.57        20.78        26.76        23.93         6.84         4.04 
TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 
       26.79        11.84        15.32        13.61        15.32         1.08 
TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 
       12.49         4.93        17.65        12.56        30.64         5.95 
TCGA-06-2567 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
        4.37        11.74         3.55         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 
        8.98         8.55         2.73         3.75         6.15         4.57 
TCGA-06-6388 TCGA-06-6390 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 
        5.23         5.39         7.36         8.32        12.85         4.77 
TCGA-06-6699 TCGA-06-6700 TCGA-06-A5U1 TCGA-06-A6S0 TCGA-06-A6S1 TCGA-06-A7TK 
        1.55         4.77         1.87         3.12         2.56         5.39 
TCGA-08-0244 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 
       22.68         1.74         8.42        25.71        12.16         9.80 
TCGA-08-0352 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 
        1.28        17.95        24.56        31.10        37.58        22.29 
TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 
        3.39        12.23        14.93        18.02        15.35        13.97 
TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 TCGA-08-0514 TCGA-08-0518 TCGA-08-0520 
        0.72        12.56         4.27        11.08        19.33        10.75 
TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 
       15.98        18.41         7.56        15.35        14.73        12.99 
TCGA-12-0619 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 
       34.92        10.45         7.59        94.78         0.10        38.17 
TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 
       25.97        26.66        12.13         3.65        20.38        28.41 
TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 
       15.06        53.85        43.23         7.63         9.73        14.93 
TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 
       14.86        91.76        24.79        18.48        10.62        23.51 
TCGA-12-0826 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 
       27.78         8.94        20.58       127.59         5.82         7.59 
TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 
       21.73        15.98        12.23        15.85         9.11        14.53 
TCGA-12-1098 TCGA-12-1099 TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 TCGA-12-3644 
        3.98         4.14        15.65        25.68        14.73        59.77 
TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3653 
       44.02        26.93        15.22        10.95        12.69        14.53 
TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 
       14.93         3.22         2.04         0.95         6.21        23.05 
TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 
        2.24        11.24        13.78         3.25         1.35         5.39 
TCGA-14-0866 TCGA-14-0867 TCGA-14-0871 TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 
       26.33         2.04        28.93        15.95        19.30         0.79 
TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 
        1.38         1.12         3.75        32.05        58.78        23.11 
TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 
        1.15        30.18         0.92         6.67        12.43         0.99 
TCGA-14-1795 TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 
        1.97        17.85         7.63         5.88         7.17        17.49 
TCGA-14-2555 TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 TCGA-15-1449 
        7.96         3.42        13.78        50.53        19.10        13.28 
TCGA-16-0846 TCGA-16-0848 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 
        3.91        17.59         4.31        29.03         4.57        10.29 
TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 TCGA-19-0962 
       21.24        13.97         6.41        11.77        21.90         0.66 
TCGA-19-0963 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 
       14.27        10.75         9.07         5.95        12.95         4.64 
TCGA-19-1390 TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 
       25.38         3.65         7.17        12.66         3.25         0.13 
TCGA-19-2619 TCGA-19-2623 TCGA-19-2624 TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 
        9.67         7.53         0.16        24.23         7.00         7.04 
TCGA-19-5947 TCGA-19-5950 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 
        6.64        17.19        18.90         4.73        12.10         1.78 
TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-19-A60I TCGA-19-A6J4 TCGA-19-A6J5 
       14.07        16.80        14.96        17.79         3.98        28.54 
TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 
       10.03        13.87         9.73        31.33         7.13         9.37 
TCGA-26-5132 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 
        9.40         8.88        18.97         1.58         7.92         2.33 
TCGA-26-A7UX TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 
       19.33         5.06        16.60         9.86        24.23        40.54 
TCGA-27-1835 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 
       21.30        14.04        11.51        24.76        10.39        10.39 
TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 
       16.08         7.59         2.86         0.20         2.53         9.21 
TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1757 
        8.35         7.63         8.48         1.22         1.55         0.13 
TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 TCGA-28-2513 TCGA-28-5204 TCGA-28-5207 
        0.66         6.74         4.77         7.30        14.93        11.28 
TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5218 
       14.53        11.77        31.27        23.44        11.01         5.16 
TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1976 TCGA-32-1978 
       22.68        12.76         5.42        15.39         0.49        15.85 
TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 
       19.50         1.18         4.67        12.69        14.86        16.93 
TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2616 TCGA-32-2632 
       12.23        20.78        15.02        15.95         7.36         8.84 
TCGA-32-2638 TCGA-32-4210 TCGA-32-4211 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 
       25.18         3.72        12.59        19.23         0.85        13.35 
TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-5651 
        8.94         9.53         0.99         4.44        11.84        15.12 
TCGA-41-6646 TCGA-4W-AA9S TCGA-4W-AA9T TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 
       12.46         4.14        14.76         3.45        20.91         4.34 
TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 
       14.33         8.22         7.50         4.80         4.54         3.09 
TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 
        3.65         9.17         2.53        10.78        16.70         3.29 
TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 
       11.38        17.06         8.35        20.98         4.83         5.03 
TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 
        0.23         9.27         7.73         7.79         1.61        17.72 
TCGA-87-5896 TCGA-OX-A56R TCGA-RR-A6KA TCGA-RR-A6KC TCGA-CS-4938 TCGA-CS-4941 
       26.30         5.92         6.28        20.55         4.70         7.69 
TCGA-CS-4942 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 
       43.89        21.01         9.96         6.38        17.69        23.84 
TCGA-CS-6665 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5277 TCGA-DB-A4X9 TCGA-DB-A4XE 
       12.43         6.61       122.73        50.86        46.42        37.45 
TCGA-DB-A64O TCGA-DB-A64X TCGA-DH-A669 TCGA-DH-A66G TCGA-DH-A7UT TCGA-DH-A7UV 
       25.48        18.51        30.21        17.19        13.38        18.61 
TCGA-DU-5849 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5872 TCGA-DU-6392 TCGA-DU-6395 
       14.56         8.45         6.81        17.49       211.17        49.02 
TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 
       65.75         1.22         7.04        11.64       133.74        19.89 
TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6410 TCGA-DU-7006 TCGA-DU-7008 TCGA-DU-7009 
       16.83        94.52         7.96        11.47       156.23       138.28 
TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7014 TCGA-DU-7292 
       14.99       105.21         6.54         8.84       117.40         7.96 
TCGA-DU-7301 TCGA-DU-7306 TCGA-DU-8161 TCGA-DU-8163 TCGA-DU-8165 TCGA-DU-8166 
       25.91        41.98        23.74        20.68        19.13        16.96 
TCGA-DU-A5TR TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S6 
       12.59         4.96         3.65         5.65        12.20        77.98 
TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76R TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TD 
       11.41        26.76        21.30       124.50        77.88         7.50 
TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5304 TCGA-E1-5322 TCGA-F6-A8O4 TCGA-FG-5962 
        0.56        50.14        41.13       130.78         0.20        47.77 
TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 
       36.82        18.77        24.99        23.97        18.44        15.35 
TCGA-FG-7643 TCGA-FG-8182 TCGA-FG-8186 TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A70Z 
       20.09        13.68        16.01        10.72        18.38        10.78 
TCGA-FG-A87Q TCGA-HT-7473 TCGA-HT-7475 TCGA-HT-7477 TCGA-HT-7604 TCGA-HT-7610 
        5.72        16.54        17.42        24.26       122.47        56.09 
TCGA-HT-7688 TCGA-HT-7693 TCGA-HT-7860 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-8011 
       31.69        17.52         0.49         3.72        11.28        16.24 
TCGA-HT-8013 TCGA-HT-8104 TCGA-HT-8108 TCGA-HT-8110 TCGA-HT-8564 TCGA-HT-A4DS 
       63.55        12.23         2.50        13.78        15.72         0.23 
TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RC TCGA-HT-A616 
        0.13        20.22         0.07        27.35         5.33         1.81 
TCGA-HT-A617 TCGA-HT-A619 TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K 
       16.14        21.40        17.65         2.43        10.52        15.35 
TCGA-HT-A74O TCGA-HW-7495 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-KT-A7W1 TCGA-P5-A5EV 
        0.10         4.31        17.82        20.35        14.40         0.23 
TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A72U TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV 
        2.30         4.11         0.16        19.33        14.83        14.53 
TCGA-QH-A6CX TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-RY-A845 TCGA-S9-A6TY 
       12.23         1.91        16.50         5.03        19.59        31.33 
TCGA-S9-A6U0 TCGA-S9-A6WM TCGA-S9-A6WO TCGA-S9-A7IQ TCGA-S9-A7IX TCGA-S9-A7J0 
       22.95        19.86        18.61        36.13        22.32        20.02 
TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7R2 TCGA-TM-A7C3 TCGA-TM-A7C4 
       15.06        13.12        28.37        10.39        49.45        48.33 
TCGA-TM-A7CA TCGA-TM-A84B TCGA-TM-A84H TCGA-TM-A84M TCGA-TQ-A7RH TCGA-VW-A8FI 
       34.78        24.92        30.44        24.79        15.98         8.05 
TCGA-WY-A85E 
       20.81 

$`AMP PEAK 13(7Q21.2) WILD-TYPE`
TCGA-02-0007 TCGA-02-0010 TCGA-02-0011 TCGA-02-0014 TCGA-02-0024 TCGA-02-0026 
       23.18        35.41        20.71        82.59        53.10        24.59 
TCGA-02-0028 TCGA-02-0039 TCGA-02-0047 TCGA-02-0058 TCGA-02-0060 TCGA-02-0068 
       90.58        10.52        14.73         8.35         6.02        26.43 
TCGA-02-0069 TCGA-02-0079 TCGA-02-0084 TCGA-02-0104 TCGA-02-0114 TCGA-02-0333 
       28.70        27.25        12.62        65.00        99.98         4.37 
TCGA-02-0338 TCGA-02-0339 TCGA-02-0432 TCGA-02-2483 TCGA-06-0122 TCGA-06-0127 
       10.59        12.39        47.11        15.32         6.15         3.98 
TCGA-06-0129 TCGA-06-0142 TCGA-06-0146 TCGA-06-0160 TCGA-06-0165 TCGA-06-0178 
       33.67         2.20        20.09        11.80        10.65        88.14 
TCGA-06-0219 TCGA-06-0240 TCGA-06-0410 TCGA-06-1805 TCGA-06-2565 TCGA-06-2566 
        0.72        20.42         4.70        33.90        16.64         5.98 
TCGA-06-2569 TCGA-06-2570 TCGA-06-5416 TCGA-06-6389 TCGA-06-6391 TCGA-06-6693 
        0.43        31.50         6.71         7.79         1.48       120.56 
TCGA-06-6701 TCGA-06-A5U0 TCGA-06-A7TL TCGA-08-0245 TCGA-08-0246 TCGA-08-0344 
        4.96         4.70         5.42        37.84         4.18       115.86 
TCGA-08-0350 TCGA-08-0351 TCGA-08-0353 TCGA-08-0512 TCGA-08-0516 TCGA-08-0517 
       29.23        65.33         8.42        42.15        19.59        58.68 
TCGA-08-0521 TCGA-08-0524 TCGA-12-0827 TCGA-12-1091 TCGA-12-1602 TCGA-12-3652 
        4.80         7.27        38.76        33.21         6.77        34.92 
TCGA-14-0736 TCGA-14-0740 TCGA-14-0862 TCGA-14-0865 TCGA-14-1452 TCGA-14-1456 
       15.12        11.97         2.89        16.50         7.10        40.96 
TCGA-14-1821 TCGA-14-3477 TCGA-15-1447 TCGA-16-0849 TCGA-16-0850 TCGA-16-1056 
       17.79         3.78        53.19        26.07        16.37        14.01 
TCGA-16-1060 TCGA-19-0960 TCGA-19-0964 TCGA-19-2620 TCGA-19-2621 TCGA-19-2625 
        9.14         8.61         3.39         4.87         1.08         4.08 
TCGA-19-5951 TCGA-19-5956 TCGA-26-5133 TCGA-26-5134 TCGA-27-1836 TCGA-27-2527 
        8.02        22.49        14.86         5.49        30.05        14.40 
TCGA-27-2528 TCGA-28-1756 TCGA-28-2514 TCGA-28-5208 TCGA-28-5216 TCGA-32-1973 
       15.78         2.83         5.26        17.88        13.64        21.07 
TCGA-32-1977 TCGA-32-2634 TCGA-32-4208 TCGA-32-4213 TCGA-32-4719 TCGA-41-4097 
        0.10        22.78        21.14        19.86        10.85         0.20 
TCGA-76-6193 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 
        2.70        18.15        10.62        64.64        40.18         0.10 
TCGA-CS-6290 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-DB-5273 
       17.95         8.48         7.56         8.02         7.40        81.96 
TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 
       75.25        47.93        72.92        50.17        44.52        36.56 
TCGA-DB-5281 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XF 
       78.28        18.84        30.21        46.72        39.78        33.57 
TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R 
       72.95        31.63        24.20        30.12         5.98        31.40 
TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A75K TCGA-DB-A75L 
       27.45        27.81        29.23        14.40        12.10        11.24 
TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 
       17.88        30.74        16.18        19.96        31.82        30.31 
TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A7UR 
       14.40         8.02        42.05        27.81        17.19        54.25 
TCGA-DH-A7US TCGA-DH-A7UU TCGA-DU-5847 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 
       13.12         3.45        18.02        17.46         6.74        13.38 
TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6396 
      182.33        18.94        15.16        52.11        22.42        75.16 
TCGA-DU-6397 TCGA-DU-6401 TCGA-DU-6408 TCGA-DU-6542 TCGA-DU-7007 TCGA-DU-7015 
       46.06        87.45       114.08         7.73        62.96        90.77 
TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 
       30.67        26.30        10.36        94.32        18.94        44.02 
TCGA-DU-7300 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8162 
       62.01        60.30        23.31         2.76         5.10        14.60 
TCGA-DU-8164 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TS TCGA-DU-A6S2 
       21.40        15.48        14.17        14.24        15.12         8.65 
TCGA-DU-A6S3 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76O TCGA-DU-A7T6 TCGA-DU-A7TB 
        2.70         7.23         5.98         7.13        17.98        42.31 
TCGA-DU-A7TC TCGA-DU-A7TG TCGA-E1-5303 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 
       23.51        44.42        67.46        79.99        57.93       134.27 
TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-A7YO TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7Z6 
       78.21        95.57        75.02        32.45        36.82        32.35 
TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-6689 TCGA-FG-7636 
       14.33         0.23        25.48        34.36        14.93        17.88 
TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-8181 TCGA-FG-8185 TCGA-FG-8187 TCGA-FG-8188 
       22.55        20.61        12.95        14.24        20.09        14.96 
TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J 
       22.52        32.61        38.27        18.71        23.70        14.76 
TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y 
       17.82        16.41        15.02        16.44        22.26        28.54 
TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N TCGA-FN-7833 TCGA-HT-7467 
       36.66        48.69        20.45        13.58        27.52         0.10 
TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7474 
        6.67        11.54        40.11         0.13         0.03         3.75 
TCGA-HT-7476 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 
        6.54         6.38        40.34        75.19        95.93       106.95 
TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7605 
      172.77         4.01         5.03        29.85        23.18         4.57 
TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7611 TCGA-HT-7616 
       17.29         3.16        22.06        45.99        57.60         0.23 
TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 
       14.27         0.16        16.24         0.76        44.68         6.05 
TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 
       42.74         0.10        14.96         0.10         0.10         2.96 
TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 
        6.90        14.53        39.48        19.23        39.09         0.23 
TCGA-HT-7858 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 
       50.63        23.61        37.15         0.33         0.13         3.68 
TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8012 TCGA-HT-8015 
        5.33        35.47        31.43         1.64         9.40         0.10 
TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8109 
       37.87        33.01         6.25         0.10         0.46         5.56 
TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8563 TCGA-HT-A4DV TCGA-HT-A5RB 
        0.23        29.59        34.19        28.27        26.04         0.10 
TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A618 TCGA-HT-A61B TCGA-HT-A74L TCGA-HW-7486 
        2.70        16.93        16.83        17.52        11.05        29.92 
TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7493 TCGA-HW-8319 
       19.89         8.32        19.23        40.18        35.90        21.70 
TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 
       21.60        19.59        12.76        20.81        20.71        19.00 
TCGA-IK-8125 TCGA-KT-A74X TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5F1 
       42.77        14.40         6.71         1.64         2.37         5.88 
TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z 
        7.63         0.76         1.28        10.42        13.25        11.64 
TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V 
        0.20         9.01        13.61        15.16         2.53        12.62 
TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CW TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 
       15.85        14.04        13.61         2.20         9.17        10.29 
TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK 
       14.53        16.34        16.73        11.08        12.99        88.83 
TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z 
       94.03        32.65        59.38        30.87         5.46         9.90 
TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV 
       28.08         2.07        30.67        62.17        87.12        18.77 
TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TZ TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 
       37.84        34.49        28.70        17.62        23.64        32.61 
TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD 
       16.08        98.24        95.93         5.85       106.39        69.50 
TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WN 
       72.59        80.12        32.45        84.99        31.10        15.91 
TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IS TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J1 
       15.16        14.07         7.92        23.51         7.13         8.19 
TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R3 TCGA-S9-A7R4 
        2.04        17.03        13.02       169.84        99.06        30.05 
TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C5 TCGA-TM-A7CF 
       98.63        31.59        18.71        11.97        49.32        48.39 
TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L 
       16.18        59.05        40.64        28.08        24.16        40.83 
TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RW 
       33.24        25.38        18.61        14.93        23.80        26.99 
TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE 
       43.04        30.08        13.51         0.10         7.89        35.93 
TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-W9-A837 TCGA-WH-A86K 
       23.47        37.05        16.01        23.21        51.06        13.32 
TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D 
       43.96        39.88        43.40        45.80        46.88        37.71 

  AMP PEAK 13(7Q21.2) MUTATED AMP PEAK 13(7Q21.2) WILD-TYPE 
                         0.07                          0.03 
  AMP PEAK 13(7Q21.2) MUTATED AMP PEAK 13(7Q21.2) WILD-TYPE 
                       211.17                        182.33 
  AMP PEAK 13(7Q21.2) MUTATED AMP PEAK 13(7Q21.2) WILD-TYPE 
                        12.59                         18.71 
[1] "0.1 - 211.2 (12.6)" "0.0 - 182.3 (18.7)"
[1] "hr=" "3.7"
D13V2, continuous
D13V3, binary
                               cls
clus                              0   1
  AMP PEAK 13(7Q21.2) MUTATED   473 147
  AMP PEAK 13(7Q21.2) WILD-TYPE  97 325
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 13(7Q21.2) MUTATED    473  147
  AMP PEAK 13(7Q21.2) WILD-TYPE   97  325
                        clus
vv                       AMP PEAK 13(7Q21.2) MUTATED
  BRAIN                                          473
  CENTRAL NERVOUS SYSTEM                         147
                        clus
vv                       AMP PEAK 13(7Q21.2) WILD-TYPE
  BRAIN                                             97
  CENTRAL NERVOUS SYSTEM                           325
[1] 2 2
[1] FALSE
D13V4, binary
                               cls
clus                              0   1
  AMP PEAK 13(7Q21.2) MUTATED   255 365
  AMP PEAK 13(7Q21.2) WILD-TYPE 175 247
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 13(7Q21.2) MUTATED    255  365
  AMP PEAK 13(7Q21.2) WILD-TYPE  175  247
        clus
vv       AMP PEAK 13(7Q21.2) MUTATED AMP PEAK 13(7Q21.2) WILD-TYPE
  FEMALE                         255                           175
  MALE                           365                           247
[1] 2 2
[1] FALSE
D13V5, continuous
                               vv
clus                            ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  AMP PEAK 13(7Q21.2) MUTATED            62                            21
  AMP PEAK 13(7Q21.2) WILD-TYPE         114                             6
                               vv
clus                            OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  AMP PEAK 13(7Q21.2) MUTATED                 39                46
  AMP PEAK 13(7Q21.2) WILD-TYPE               79               132
                               vv
clus                            TREATED PRIMARY GBM
  AMP PEAK 13(7Q21.2) MUTATED                    12
  AMP PEAK 13(7Q21.2) WILD-TYPE                   6
                               vv
clus                            UNTREATED PRIMARY (DE NOVO) GBM
  AMP PEAK 13(7Q21.2) MUTATED                               440
  AMP PEAK 13(7Q21.2) WILD-TYPE                              85
D13V6, multiclass
                                 clus
vv                                AMP PEAK 13(7Q21.2) MUTATED
  ASTROCYTOMA                                              62
  GLIOBLASTOMA MULTIFORME (GBM)                            21
  OLIGOASTROCYTOMA                                         39
  OLIGODENDROGLIOMA                                        46
  TREATED PRIMARY GBM                                      12
  UNTREATED PRIMARY (DE NOVO) GBM                         440
                                 clus
vv                                AMP PEAK 13(7Q21.2) WILD-TYPE
  ASTROCYTOMA                                               114
  GLIOBLASTOMA MULTIFORME (GBM)                               6
  OLIGOASTROCYTOMA                                           79
  OLIGODENDROGLIOMA                                         132
  TREATED PRIMARY GBM                                         6
  UNTREATED PRIMARY (DE NOVO) GBM                            85
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D13V7, binary
                               cls
clus                              0   1
  AMP PEAK 13(7Q21.2) MUTATED   345 275
  AMP PEAK 13(7Q21.2) WILD-TYPE 129 293
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 13(7Q21.2) MUTATED    345  275
  AMP PEAK 13(7Q21.2) WILD-TYPE  129  293
     clus
vv    AMP PEAK 13(7Q21.2) MUTATED AMP PEAK 13(7Q21.2) WILD-TYPE
  NO                          345                           129
  YES                         275                           293
[1] 2 2
[1] FALSE
                               vv
clus                            AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK 13(7Q21.2) MUTATED                                  1    10
  AMP PEAK 13(7Q21.2) WILD-TYPE                                0    11
                               vv
clus                            BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 13(7Q21.2) MUTATED                          50   536
  AMP PEAK 13(7Q21.2) WILD-TYPE                        14   386
D13V8, multiclass
                                  clus
vv                                 AMP PEAK 13(7Q21.2) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                           1
  ASIAN                                                     10
  BLACK OR AFRICAN AMERICAN                                 50
  WHITE                                                    536
                                  clus
vv                                 AMP PEAK 13(7Q21.2) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                             0
  ASIAN                                                       11
  BLACK OR AFRICAN AMERICAN                                   14
  WHITE                                                      386
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D13V9, binary
                               cls
clus                              0   1
  AMP PEAK 13(7Q21.2) MUTATED    13 527
  AMP PEAK 13(7Q21.2) WILD-TYPE  17 364
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 13(7Q21.2) MUTATED     13  527
  AMP PEAK 13(7Q21.2) WILD-TYPE   17  364
                        clus
vv                       AMP PEAK 13(7Q21.2) MUTATED
  HISPANIC OR LATINO                              13
  NOT HISPANIC OR LATINO                         527
                        clus
vv                       AMP PEAK 13(7Q21.2) WILD-TYPE
  HISPANIC OR LATINO                                17
  NOT HISPANIC OR LATINO                           364
[1] 2 2
[1] FALSE

Clustering(14) Variable = AMP PEAK 14(7Q31.2) MUTATION ANALYSIS
D14V1, survival
                               sevent
clus2                             0   1
  AMP PEAK 14(7Q31.2) MUTATED   197 431
  AMP PEAK 14(7Q31.2) WILD-TYPE 283 128
  AMP PEAK 14(7Q31.2) MUTATED AMP PEAK 14(7Q31.2) WILD-TYPE 
                          628                           411 
  AMP PEAK 14(7Q31.2) MUTATED AMP PEAK 14(7Q31.2) WILD-TYPE 
                          431                           128 
$`AMP PEAK 14(7Q31.2) MUTATED`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0009 TCGA-02-0010 TCGA-02-0015 
       11.77         4.73        18.35        10.59        35.41        20.61 
TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 TCGA-02-0025 TCGA-02-0027 
       87.06        77.65        20.12        53.10        42.74        12.16 
TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0043 TCGA-02-0046 
        2.83        14.14         3.62        10.72        18.31         6.87 
TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 TCGA-02-0059 
       15.09        12.59         6.54         2.50        19.86         9.57 
TCGA-02-0064 TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 
       19.73        25.05         5.49        10.19        20.84        27.25 
TCGA-02-0080 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 
       89.72        51.32         8.81        57.76        16.96         3.48 
TCGA-02-0102 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 TCGA-02-0115 
       27.02        11.67        17.65        23.18        92.65        15.65 
TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 
       48.95        16.54        16.93        17.72        10.75        14.47 
TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 
        3.98        13.87        14.20        15.95        12.23         9.90 
TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0337 
        7.73        10.62         7.33        15.91        25.71        25.12 
TCGA-02-0422 TCGA-02-0430 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 
       14.50        10.55        11.34         9.27        16.21         3.35 
TCGA-02-2466 TCGA-02-2470 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0124 
       16.80        12.92        15.45        20.32         2.70        20.38 
TCGA-06-0125 TCGA-06-0126 TCGA-06-0128 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 
       47.61         6.94        22.72        12.95        25.35        14.30 
TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0143 
       26.70        24.23        11.90         0.20        10.29        11.74 
TCGA-06-0145 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 
        2.33        17.79        10.09         8.61        19.46        46.59 
TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0159 TCGA-06-0164 
       12.33        13.94        10.45         3.19         9.44        56.91 
TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 
        5.85        19.66         3.29        13.12         4.47         3.22 
TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 
        4.04        91.00         4.18        20.25         3.65        69.90 
TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 
       73.84        27.22        44.58        15.42        10.42        38.96 
TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 
        4.67         7.40         5.56         0.39         7.66         8.42 
TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 
        7.63         7.40        11.84         0.53        15.02        24.16 
TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 
       19.82        13.64        13.32        48.69        10.82         9.01 
TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 
        0.26        72.36         4.70         9.57         3.16        35.11 
TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 
       12.62         5.75         5.75         9.80         2.10        23.57 
TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 
       14.20        26.40        46.88         7.86         2.70         2.70 
TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 
        0.92        43.46        46.19         5.65         7.17        40.41 
TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1087 
       16.57        20.78        26.76        23.93         6.84         4.04 
TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 
       26.79        11.84        15.32        13.61        15.32         1.08 
TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 
       12.49         4.93        17.65        12.56        30.64         5.95 
TCGA-06-2567 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
        4.37        11.74         3.55         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 
        8.98         8.55         2.73         3.75         6.15         4.57 
TCGA-06-6388 TCGA-06-6390 TCGA-06-6391 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 
        5.23         5.39         1.48         7.36         8.32        12.85 
TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-A5U1 TCGA-06-A6S0 TCGA-06-A6S1 
        4.77         1.55         4.77         1.87         3.12         2.56 
TCGA-06-A7TK TCGA-08-0244 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 
        5.39        22.68         1.74         8.42        25.71        12.16 
TCGA-08-0349 TCGA-08-0352 TCGA-08-0354 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 
        9.80         1.28        17.95        31.10        37.58        22.29 
TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 
        3.39        12.23        14.93        18.02        15.35        13.97 
TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 TCGA-08-0518 TCGA-08-0520 TCGA-08-0525 
        0.72        12.56         4.27        19.33        10.75        15.98 
TCGA-08-0529 TCGA-08-0531 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 
       18.41         7.56        14.73        12.99        34.92        10.45 
TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 
        7.59        94.78         0.10        38.17        25.97        26.66 
TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 
        3.65        20.38        28.41        15.06        53.85        43.23 
TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 
        7.63         9.73        14.93        14.86        91.76        24.79 
TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 TCGA-12-0828 TCGA-12-0829 
       18.48        10.62        23.51        27.78         8.94        20.58 
TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 
      127.59         5.82         7.59        21.73        15.98        12.23 
TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 TCGA-12-1598 
       15.85         9.11        14.53         3.98         4.14        15.65 
TCGA-12-1599 TCGA-12-1600 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 
       25.68        14.73        59.77        44.02        26.93        15.22 
TCGA-12-3650 TCGA-12-3651 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 
       10.95        12.69        14.53        14.93         3.22         2.04 
TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 
        0.95         6.21        23.05         2.24        11.24        13.78 
TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 TCGA-14-0866 TCGA-14-0867 TCGA-14-0871 
        3.25         1.35         5.39        26.33         2.04        28.93 
TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 
       15.95        19.30         0.79         1.38         1.12         3.75 
TCGA-14-1450 TCGA-14-1451 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 
       58.78        23.11        30.18         0.92        40.96         6.67 
TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 
       12.43         0.99         1.97        17.85         7.63         5.88 
TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-4157 TCGA-15-0742 TCGA-15-1446 
        7.17        17.49         7.96         3.42        13.78        19.10 
TCGA-15-1449 TCGA-16-0846 TCGA-16-0848 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 
       13.28         3.91        17.59         4.31        29.03         4.57 
TCGA-16-1055 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 
       10.29        21.24        13.97         6.41        11.77        21.90 
TCGA-19-0962 TCGA-19-0963 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 
        0.66        14.27        10.75         9.07         5.95        12.95 
TCGA-19-1389 TCGA-19-1390 TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 TCGA-19-1791 
        4.64        25.38         3.65         7.17        12.66         0.13 
TCGA-19-2623 TCGA-19-2624 TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 
        7.53         0.16        24.23         7.00         7.04         6.64 
TCGA-19-5950 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 
       17.19        18.90         4.73        12.10         1.78        14.07 
TCGA-19-5959 TCGA-19-5960 TCGA-19-A60I TCGA-19-A6J4 TCGA-19-A6J5 TCGA-26-1438 
       16.80        14.96        17.79         3.98        28.54        10.03 
TCGA-26-1439 TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 
       13.87         9.73        31.33         7.13         9.37         9.40 
TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-26-A7UX 
        8.88        18.97         1.58         7.92         2.33        19.33 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 
        5.06        16.60         9.86        24.23        40.54        21.30 
TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 
       14.04        11.51        24.76        10.39        10.39        16.08 
TCGA-27-2524 TCGA-27-2526 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 
        7.59         2.86         0.20         2.53         9.21         8.35 
TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1757 TCGA-28-2502 
        7.63         8.48         1.22         1.55         0.13         0.66 
TCGA-28-2506 TCGA-28-2509 TCGA-28-2513 TCGA-28-5204 TCGA-28-5207 TCGA-28-5209 
        6.74         4.77         7.30        14.93        11.28        14.53 
TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 
       11.77        31.27        23.44        11.01        13.64         5.16 
TCGA-28-5219 TCGA-28-6450 TCGA-32-1970 TCGA-32-1976 TCGA-32-1978 TCGA-32-1979 
       22.68         5.42        15.39         0.49        15.85        19.50 
TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 
        1.18         4.67        12.69        14.86        16.93        12.23 
TCGA-32-2494 TCGA-32-2495 TCGA-32-2616 TCGA-32-2632 TCGA-32-2638 TCGA-32-4210 
       20.78        15.02         7.36         8.84        25.18         3.72 
TCGA-32-4211 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 
       12.59        19.23         0.85        13.35         8.94         9.53 
TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-5651 TCGA-41-6646 TCGA-4W-AA9S 
        0.99         4.44        11.84        15.12        12.46         4.14 
TCGA-4W-AA9T TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 
       14.76         3.45        20.91         4.34        14.33         8.22 
TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 
        7.50         4.80         4.54         3.09         3.65         9.17 
TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6280 TCGA-76-6282 
        2.53        10.78        16.70         3.29        11.38        17.06 
TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 
        8.35        20.98         4.83         5.03         0.23         9.27 
TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 TCGA-OX-A56R 
        7.73         7.79         1.61        17.72        26.30         5.92 
TCGA-RR-A6KA TCGA-RR-A6KC TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-5395 
        6.28        20.55         4.70         7.69        43.89        21.01 
TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6665 TCGA-CS-6670 
        9.96         6.38        17.69        23.84        12.43         6.61 
TCGA-DB-5270 TCGA-DB-5277 TCGA-DB-A4X9 TCGA-DB-A4XB TCGA-DB-A4XD TCGA-DB-A4XE 
      122.73        50.86        46.42        30.21        39.78        37.45 
TCGA-DB-A64O TCGA-DB-A64X TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66D TCGA-DH-A66G 
       25.48        18.51         8.02        30.21        27.81        17.19 
TCGA-DH-A7UT TCGA-DH-A7UV TCGA-DU-5849 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5872 
       13.38        18.61        14.56         8.45         6.81        17.49 
TCGA-DU-6392 TCGA-DU-6395 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6402 TCGA-DU-6403 
      211.17        49.02        65.75         1.22         7.04        11.64 
TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6410 TCGA-DU-7006 
      133.74        19.89        16.83        94.52         7.96        11.47 
TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 
      156.23       138.28        14.99       105.21         6.54         8.84 
TCGA-DU-7014 TCGA-DU-7292 TCGA-DU-7301 TCGA-DU-7306 TCGA-DU-8161 TCGA-DU-8163 
      117.40         7.96        25.91        41.98        23.74        20.68 
TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-A5TR TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW 
       19.13        16.96        12.59         4.96         3.65         5.65 
TCGA-DU-A5TY TCGA-DU-A6S6 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R 
       12.20        77.98        11.41        26.76         7.13        21.30 
TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TD TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5304 
      124.50        77.88         7.50         0.56        50.14        41.13 
TCGA-E1-5322 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6690 
      130.78         0.20        47.77        36.82        18.77        24.99 
TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7643 TCGA-FG-8182 TCGA-FG-8186 
       23.97        18.44        15.35        20.09        13.68        16.01 
TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A60L TCGA-FG-A70Z TCGA-FG-A711 TCGA-FG-A87Q 
       10.72        18.38        16.41        10.78        48.69         5.72 
TCGA-HT-7473 TCGA-HT-7475 TCGA-HT-7477 TCGA-HT-7604 TCGA-HT-7610 TCGA-HT-7688 
       16.54        17.42        24.26       122.47        56.09        31.69 
TCGA-HT-7693 TCGA-HT-7860 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-8011 TCGA-HT-8013 
       17.52         0.49         3.72        11.28        16.24        63.55 
TCGA-HT-8104 TCGA-HT-8108 TCGA-HT-8110 TCGA-HT-8114 TCGA-HT-8564 TCGA-HT-A4DS 
       12.23         2.50        13.78        34.19        15.72         0.23 
TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RC TCGA-HT-A616 
        0.13        20.22         0.07        27.35         5.33         1.81 
TCGA-HT-A617 TCGA-HT-A619 TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K 
       16.14        21.40        17.65         2.43        10.52        15.35 
TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7495 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-KT-A7W1 
       11.05         0.10         4.31        17.82        20.35        14.40 
TCGA-P5-A5EV TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A72U TCGA-P5-A731 
        0.23         2.30         4.11         5.88         0.16         9.01 
TCGA-P5-A733 TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CX TCGA-QH-A6X3 
       13.61        19.33        14.83        14.53        12.23        10.29 
TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A870 TCGA-RY-A845 TCGA-S9-A6TY 
        1.91        16.50         5.03        12.99        19.59        31.33 
TCGA-S9-A6U0 TCGA-S9-A6WM TCGA-S9-A6WO TCGA-S9-A7IQ TCGA-S9-A7IX TCGA-S9-A7IZ 
       22.95        19.86        18.61        36.13        22.32         7.13 
TCGA-S9-A7J0 TCGA-S9-A7QW TCGA-S9-A7QY TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-TM-A7C3 
       20.02        15.06        28.37       169.84        10.39        49.45 
TCGA-TM-A7C4 TCGA-TM-A7CA TCGA-TM-A84B TCGA-TM-A84H TCGA-TM-A84L TCGA-TM-A84M 
       48.33        34.78        24.92        30.44        40.83        24.79 
TCGA-TQ-A7RH TCGA-VW-A7QS TCGA-VW-A8FI TCGA-WY-A85E 
       15.98        23.21         8.05        20.81 

$`AMP PEAK 14(7Q31.2) WILD-TYPE`
TCGA-02-0007 TCGA-02-0011 TCGA-02-0014 TCGA-02-0026 TCGA-02-0028 TCGA-02-0039 
       23.18        20.71        82.59        24.59        90.58        10.52 
TCGA-02-0047 TCGA-02-0048 TCGA-02-0058 TCGA-02-0060 TCGA-02-0068 TCGA-02-0069 
       14.73         3.22         8.35         6.02        26.43        28.70 
TCGA-02-0083 TCGA-02-0084 TCGA-02-0104 TCGA-02-0114 TCGA-02-0333 TCGA-02-0338 
       22.72        12.62        65.00        99.98         4.37        10.59 
TCGA-02-0339 TCGA-02-0432 TCGA-02-2483 TCGA-06-0122 TCGA-06-0127 TCGA-06-0129 
       12.39        47.11        15.32         6.15         3.98        33.67 
TCGA-06-0142 TCGA-06-0146 TCGA-06-0158 TCGA-06-0160 TCGA-06-0162 TCGA-06-0165 
        2.20        20.09        10.82        11.80         3.42        10.65 
TCGA-06-0178 TCGA-06-0219 TCGA-06-0240 TCGA-06-1805 TCGA-06-2565 TCGA-06-2566 
       88.14         0.72        20.42        33.90        16.64         5.98 
TCGA-06-2569 TCGA-06-2570 TCGA-06-5416 TCGA-06-6389 TCGA-06-6693 TCGA-06-6701 
        0.43        31.50         6.71         7.79       120.56         4.96 
TCGA-06-A5U0 TCGA-06-A7TL TCGA-08-0245 TCGA-08-0246 TCGA-08-0344 TCGA-08-0350 
        4.70         5.42        37.84         4.18       115.86        29.23 
TCGA-08-0351 TCGA-08-0353 TCGA-08-0355 TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 
       65.33         8.42        24.56        42.15        11.08        19.59 
TCGA-08-0517 TCGA-08-0521 TCGA-08-0524 TCGA-12-0615 TCGA-12-0691 TCGA-12-0827 
       58.68         4.80         7.27        15.35        12.13        38.76 
TCGA-12-1091 TCGA-12-1602 TCGA-12-3652 TCGA-14-0736 TCGA-14-0740 TCGA-14-0862 
       33.21         6.77        34.92        15.12        11.97         2.89 
TCGA-14-0865 TCGA-14-1402 TCGA-14-1452 TCGA-14-1453 TCGA-14-1821 TCGA-14-3477 
       16.50        32.05         7.10         1.15        17.79         3.78 
TCGA-15-1444 TCGA-15-1447 TCGA-16-0849 TCGA-16-0850 TCGA-16-1056 TCGA-16-1060 
       50.53        53.19        26.07        16.37        14.01         9.14 
TCGA-19-0960 TCGA-19-0964 TCGA-19-1789 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 
        8.61         3.39         3.25         9.67         4.87         1.08 
TCGA-19-2625 TCGA-19-5951 TCGA-19-5956 TCGA-26-5133 TCGA-26-5134 TCGA-27-1836 
        4.08         8.02        22.49        14.86         5.49        30.05 
TCGA-27-2527 TCGA-27-2528 TCGA-28-1756 TCGA-28-2514 TCGA-28-5208 TCGA-28-5220 
       14.40        15.78         2.83         5.26        17.88        12.76 
TCGA-32-1973 TCGA-32-1977 TCGA-32-2615 TCGA-32-2634 TCGA-32-4208 TCGA-32-4213 
       21.07         0.10        15.95        22.78        21.14        19.86 
TCGA-32-4719 TCGA-41-4097 TCGA-76-6193 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 
       10.85         0.20         2.70        18.15        10.62        64.64 
TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-6290 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 
       40.18         0.10        17.95         8.48         7.56         8.02 
TCGA-CS-6669 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5278 
        7.40        81.96        75.25        47.93        72.92        50.17 
TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4XA TCGA-DB-A4XC TCGA-DB-A4XF 
       44.52        36.56        78.28        18.84        46.72        33.57 
TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R 
       72.95        31.63        24.20        30.12         5.98        31.40 
TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A75K TCGA-DB-A75L 
       27.45        27.81        29.23        14.40        12.10        11.24 
TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 
       17.88        30.74        16.18        19.96        31.82        30.31 
TCGA-DH-5143 TCGA-DH-A66B TCGA-DH-A66F TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UU 
       14.40        42.05        17.19        54.25        13.12         3.45 
TCGA-DU-5847 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5870 TCGA-DU-5871 
       18.02        17.46         6.74        13.38       182.33        18.94 
TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6401 
       15.16        52.11        22.42        75.16        46.06        87.45 
TCGA-DU-6408 TCGA-DU-6542 TCGA-DU-7007 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 
      114.08         7.73        62.96        90.77        30.67        26.30 
TCGA-DU-7290 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7302 
       10.36        94.32        18.94        44.02        62.01        60.30 
TCGA-DU-7304 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8162 TCGA-DU-8164 TCGA-DU-8167 
       23.31         2.76         5.10        14.60        21.40        15.48 
TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TS TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S7 
       14.17        14.24        15.12         8.65         2.70         7.23 
TCGA-DU-A6S8 TCGA-DU-A7T6 TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TG TCGA-E1-5303 
        5.98        17.98        42.31        23.51        44.42        67.46 
TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-A7YO 
       79.99        57.93       134.27        78.21        95.57        75.02 
TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-FG-5963 
       32.45        36.82        32.35        14.33         0.23        25.48 
TCGA-FG-5964 TCGA-FG-6689 TCGA-FG-7636 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-8181 
       34.36        14.93        17.88        22.55        20.61        12.95 
TCGA-FG-8185 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT 
       14.24        20.09        14.96        22.52        32.61        38.27 
TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A6IZ TCGA-FG-A6J1 
       18.71        23.70        14.76        17.82        15.02        16.44 
TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A710 TCGA-FG-A713 TCGA-FG-A87N TCGA-FN-7833 
       22.26        28.54        36.66        20.45        13.58        27.52 
TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 
        0.10         6.67        11.54        40.11         0.13         0.03 
TCGA-HT-7474 TCGA-HT-7476 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 
        3.75         6.54         6.38        40.34        75.19        95.93 
TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 
      106.95       172.77         4.01         5.03        29.85        23.18 
TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7611 
        4.57        17.29         3.16        22.06        45.99        57.60 
TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 
        0.23        14.27         0.16        16.24         0.76        44.68 
TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 
        6.05        42.74         0.10        14.96         0.10         0.10 
TCGA-HT-7692 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 
        2.96         6.90        14.53        39.48        19.23        39.09 
TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 
        0.23        50.63        23.61        37.15         0.33         0.13 
TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8012 
        3.68         5.33        35.47        31.43         1.64         9.40 
TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 
        0.10        37.87        33.01         6.25         0.10         0.46 
TCGA-HT-8109 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8563 TCGA-HT-A4DV TCGA-HT-A5RB 
        5.56         0.23        29.59        28.27        26.04         0.10 
TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A618 TCGA-HT-A61B TCGA-HW-7486 TCGA-HW-7487 
        2.70        16.93        16.83        17.52        29.92        19.89 
TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7493 TCGA-HW-8319 TCGA-HW-8320 
        8.32        19.23        40.18        35.90        21.70        21.60 
TCGA-HW-8321 TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 
       19.59        12.76        20.81        20.71        19.00        42.77 
TCGA-KT-A74X TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5F2 TCGA-P5-A5F4 
       14.40         6.71         1.64         2.37         7.63         0.76 
TCGA-P5-A5F6 TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-QH-A65R 
        1.28        10.42        13.25        11.64         0.20        15.16 
TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CW TCGA-QH-A6CY 
        2.53        12.62        15.85        14.04        13.61         2.20 
TCGA-QH-A6CZ TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A86X TCGA-R8-A6MK 
        9.17        14.53        16.34        16.73        11.08        88.83 
TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z 
       94.03        32.65        59.38        30.87         5.46         9.90 
TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV 
       28.08         2.07        30.67        62.17        87.12        18.77 
TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TZ TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 
       37.84        34.49        28.70        17.62        23.64        32.61 
TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD 
       16.08        98.24        95.93         5.85       106.39        69.50 
TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WN 
       72.59        80.12        32.45        84.99        31.10        15.91 
TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IS TCGA-S9-A7IY TCGA-S9-A7J1 TCGA-S9-A7J2 
       15.16        14.07         7.92        23.51         8.19         2.04 
TCGA-S9-A7J3 TCGA-S9-A7QX TCGA-S9-A7QZ TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 
       17.03        13.12        13.02        99.06        30.05        98.63 
TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C5 TCGA-TM-A7CF TCGA-TM-A84C 
       31.59        18.71        11.97        49.32        48.39        16.18 
TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84O TCGA-TM-A84Q 
       59.05        40.64        28.08        24.16        33.24        25.38 
TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RW TCGA-VM-A8C8 TCGA-VM-A8C9 
       18.61        14.93        23.80        26.99        43.04        30.08 
TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CH TCGA-VV-A829 
       13.51         0.10         7.89        35.93        23.47        37.05 
TCGA-VV-A86M TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A 
       16.01        51.06        13.32        43.96        39.88        43.40 
TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D 
       45.80        46.88        37.71 

  AMP PEAK 14(7Q31.2) MUTATED AMP PEAK 14(7Q31.2) WILD-TYPE 
                         0.07                          0.03 
  AMP PEAK 14(7Q31.2) MUTATED AMP PEAK 14(7Q31.2) WILD-TYPE 
                       211.17                        182.33 
  AMP PEAK 14(7Q31.2) MUTATED AMP PEAK 14(7Q31.2) WILD-TYPE 
                       12.675                        18.020 
[1] "0.1 - 211.2 (12.7)" "0.0 - 182.3 (18.0)"
[1] "hr=" "3.2"
D14V2, continuous
D14V3, binary
                               cls
clus                              0   1
  AMP PEAK 14(7Q31.2) MUTATED   465 164
  AMP PEAK 14(7Q31.2) WILD-TYPE 105 308
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 14(7Q31.2) MUTATED    465  164
  AMP PEAK 14(7Q31.2) WILD-TYPE  105  308
                        clus
vv                       AMP PEAK 14(7Q31.2) MUTATED
  BRAIN                                          465
  CENTRAL NERVOUS SYSTEM                         164
                        clus
vv                       AMP PEAK 14(7Q31.2) WILD-TYPE
  BRAIN                                            105
  CENTRAL NERVOUS SYSTEM                           308
[1] 2 2
[1] FALSE
D14V4, binary
                               cls
clus                              0   1
  AMP PEAK 14(7Q31.2) MUTATED   259 370
  AMP PEAK 14(7Q31.2) WILD-TYPE 171 242
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 14(7Q31.2) MUTATED    259  370
  AMP PEAK 14(7Q31.2) WILD-TYPE  171  242
        clus
vv       AMP PEAK 14(7Q31.2) MUTATED AMP PEAK 14(7Q31.2) WILD-TYPE
  FEMALE                         259                           171
  MALE                           370                           242
[1] 2 2
[1] FALSE
D14V5, continuous
                               vv
clus                            ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  AMP PEAK 14(7Q31.2) MUTATED            69                            20
  AMP PEAK 14(7Q31.2) WILD-TYPE         107                             7
                               vv
clus                            OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  AMP PEAK 14(7Q31.2) MUTATED                 45                50
  AMP PEAK 14(7Q31.2) WILD-TYPE               73               128
                               vv
clus                            TREATED PRIMARY GBM
  AMP PEAK 14(7Q31.2) MUTATED                    13
  AMP PEAK 14(7Q31.2) WILD-TYPE                   5
                               vv
clus                            UNTREATED PRIMARY (DE NOVO) GBM
  AMP PEAK 14(7Q31.2) MUTATED                               432
  AMP PEAK 14(7Q31.2) WILD-TYPE                              93
D14V6, multiclass
                                 clus
vv                                AMP PEAK 14(7Q31.2) MUTATED
  ASTROCYTOMA                                              69
  GLIOBLASTOMA MULTIFORME (GBM)                            20
  OLIGOASTROCYTOMA                                         45
  OLIGODENDROGLIOMA                                        50
  TREATED PRIMARY GBM                                      13
  UNTREATED PRIMARY (DE NOVO) GBM                         432
                                 clus
vv                                AMP PEAK 14(7Q31.2) WILD-TYPE
  ASTROCYTOMA                                               107
  GLIOBLASTOMA MULTIFORME (GBM)                               7
  OLIGOASTROCYTOMA                                           73
  OLIGODENDROGLIOMA                                         128
  TREATED PRIMARY GBM                                         5
  UNTREATED PRIMARY (DE NOVO) GBM                            93
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D14V7, binary
                               cls
clus                              0   1
  AMP PEAK 14(7Q31.2) MUTATED   340 289
  AMP PEAK 14(7Q31.2) WILD-TYPE 134 279
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 14(7Q31.2) MUTATED    340  289
  AMP PEAK 14(7Q31.2) WILD-TYPE  134  279
     clus
vv    AMP PEAK 14(7Q31.2) MUTATED AMP PEAK 14(7Q31.2) WILD-TYPE
  NO                          340                           134
  YES                         289                           279
[1] 2 2
[1] FALSE
                               vv
clus                            AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK 14(7Q31.2) MUTATED                                  1    11
  AMP PEAK 14(7Q31.2) WILD-TYPE                                0    10
                               vv
clus                            BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 14(7Q31.2) MUTATED                          49   546
  AMP PEAK 14(7Q31.2) WILD-TYPE                        15   376
D14V8, multiclass
                                  clus
vv                                 AMP PEAK 14(7Q31.2) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                           1
  ASIAN                                                     11
  BLACK OR AFRICAN AMERICAN                                 49
  WHITE                                                    546
                                  clus
vv                                 AMP PEAK 14(7Q31.2) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                             0
  ASIAN                                                       10
  BLACK OR AFRICAN AMERICAN                                   15
  WHITE                                                      376
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D14V9, binary
                               cls
clus                              0   1
  AMP PEAK 14(7Q31.2) MUTATED    13 538
  AMP PEAK 14(7Q31.2) WILD-TYPE  17 353
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 14(7Q31.2) MUTATED     13  538
  AMP PEAK 14(7Q31.2) WILD-TYPE   17  353
                        clus
vv                       AMP PEAK 14(7Q31.2) MUTATED
  HISPANIC OR LATINO                              13
  NOT HISPANIC OR LATINO                         538
                        clus
vv                       AMP PEAK 14(7Q31.2) WILD-TYPE
  HISPANIC OR LATINO                                17
  NOT HISPANIC OR LATINO                           353
[1] 2 2
[1] FALSE

Clustering(15) Variable = AMP PEAK 15(7Q32.3) MUTATION ANALYSIS
D15V1, survival
                               sevent
clus2                             0   1
  AMP PEAK 15(7Q32.3) MUTATED   204 435
  AMP PEAK 15(7Q32.3) WILD-TYPE 276 124
  AMP PEAK 15(7Q32.3) MUTATED AMP PEAK 15(7Q32.3) WILD-TYPE 
                          639                           400 
  AMP PEAK 15(7Q32.3) MUTATED AMP PEAK 15(7Q32.3) WILD-TYPE 
                          435                           124 
$`AMP PEAK 15(7Q32.3) MUTATED`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0009 TCGA-02-0014 TCGA-02-0015 
       11.77         4.73        18.35        10.59        82.59        20.61 
TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0025 TCGA-02-0027 TCGA-02-0033 
       87.06        77.65        20.12        42.74        12.16         2.83 
TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0043 TCGA-02-0046 TCGA-02-0051 
       14.14         3.62        10.72        18.31         6.87        15.09 
TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 TCGA-02-0059 TCGA-02-0064 
       12.59         6.54         2.50        19.86         9.57        19.73 
TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 
       25.05         5.49        10.19        20.84        27.25        89.72 
TCGA-02-0083 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 
       22.72        51.32         8.81        57.76        16.96         3.48 
TCGA-02-0102 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 TCGA-02-0115 
       27.02        11.67        17.65        23.18        92.65        15.65 
TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 
       48.95        16.54        16.93        17.72        10.75        14.47 
TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 
        3.98        13.87        14.20        15.95        12.23         9.90 
TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 
        7.73        10.62         7.33        15.91        25.71         4.37 
TCGA-02-0337 TCGA-02-0422 TCGA-02-0430 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 
       25.12        14.50        10.55        11.34         9.27        16.21 
TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 
        3.35        16.80        12.92        15.45        20.32         2.70 
TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0128 TCGA-06-0130 TCGA-06-0132 
       20.38        47.61         6.94        22.72        12.95        25.35 
TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 
       14.30        26.70        24.23        11.90         0.20        10.29 
TCGA-06-0143 TCGA-06-0145 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 
       11.74         2.33        17.79        10.09         8.61        19.46 
TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0159 
       46.59        12.33        13.94        10.45         3.19         9.44 
TCGA-06-0162 TCGA-06-0164 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 
        3.42        56.91         5.85        19.66         3.29        13.12 
TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 TCGA-06-0179 
        4.47         3.22         4.04        91.00         4.18        20.25 
TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 
        3.65        69.90        73.84        27.22        44.58        15.42 
TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 
       10.42        38.96         4.67         7.40         5.56         0.39 
TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 
        7.66         8.42         7.63         7.40        11.84         0.53 
TCGA-06-0214 TCGA-06-0216 TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 TCGA-06-0241 
       15.02        24.16        19.82        13.64        13.32        48.69 
TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0412 TCGA-06-0413 
       10.82         9.01         0.26        72.36         9.57         3.16 
TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 
       35.11        12.62         5.75         5.75         9.80         2.10 
TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 
       23.57        14.20        26.40        46.88         7.86         2.70 
TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 
        2.70         0.92        43.46        46.19         5.65         7.17 
TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 
       40.41        16.57        20.78        26.76        23.93         6.84 
TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1806 
        4.04        26.79        11.84        15.32        13.61        15.32 
TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 
        1.08        12.49         4.93        17.65        12.56        30.64 
TCGA-06-2564 TCGA-06-2567 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 
        5.95         4.37        11.74         3.55         8.35         4.54 
TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.81         8.98         8.55         2.73         3.75         6.15 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6390 TCGA-06-6391 TCGA-06-6694 TCGA-06-6695 
        4.57         5.23         5.39         1.48         7.36         8.32 
TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-A5U1 TCGA-06-A6S0 
       12.85         4.77         1.55         4.77         1.87         3.12 
TCGA-06-A6S1 TCGA-06-A7TK TCGA-08-0244 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 
        2.56         5.39        22.68         1.74         8.42        25.71 
TCGA-08-0348 TCGA-08-0349 TCGA-08-0352 TCGA-08-0354 TCGA-08-0356 TCGA-08-0357 
       12.16         9.80         1.28        17.95        31.10        37.58 
TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 
       22.29         3.39        12.23        14.93        18.02        15.35 
TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 TCGA-08-0517 TCGA-08-0518 
       13.97         0.72        12.56         4.27        58.68        19.33 
TCGA-08-0520 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0616 TCGA-12-0618 
       10.75        15.98        18.41         7.56        14.73        12.99 
TCGA-12-0619 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 
       34.92        10.45         7.59        94.78         0.10        38.17 
TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 
       25.97        26.66        12.13         3.65        20.38        28.41 
TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 
       15.06        53.85        43.23         7.63         9.73        14.93 
TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 
       14.86        91.76        24.79        18.48        10.62        23.51 
TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 
       27.78        38.76         8.94        20.58       127.59         5.82 
TCGA-12-1090 TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 
        7.59        21.73        15.98        12.23        15.85         9.11 
TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 
       14.53         3.98         4.14        15.65        25.68        14.73 
TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 
       59.77        44.02        26.93        15.22        10.95        12.69 
TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0781 TCGA-14-0783 
       14.53        14.93         3.22         2.04         0.95         6.21 
TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 
       23.05         2.24        11.24        13.78         3.25         1.35 
TCGA-14-0817 TCGA-14-0866 TCGA-14-0867 TCGA-14-0871 TCGA-14-1034 TCGA-14-1037 
        5.39        26.33         2.04        28.93        15.95        19.30 
TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1450 TCGA-14-1451 
        0.79         1.38         1.12         3.75        58.78        23.11 
TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 
       30.18         0.92        40.96         6.67        12.43         0.99 
TCGA-14-1795 TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 
        1.97        17.85         7.63         5.88         7.17        17.49 
TCGA-14-2555 TCGA-14-4157 TCGA-15-0742 TCGA-15-1446 TCGA-15-1449 TCGA-16-0846 
        7.96         3.42        13.78        19.10        13.28         3.91 
TCGA-16-0848 TCGA-16-0849 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 
       17.59        26.07         4.31        29.03         4.57        10.29 
TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 
       21.24        13.97         6.41        11.77        21.90         8.61 
TCGA-19-0962 TCGA-19-0963 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1389 
        0.66        14.27        10.75         9.07         5.95         4.64 
TCGA-19-1390 TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 TCGA-19-1791 TCGA-19-2619 
       25.38         3.65         7.17        12.66         0.13         9.67 
TCGA-19-2623 TCGA-19-2624 TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 
        7.53         0.16        24.23         7.00         7.04         6.64 
TCGA-19-5950 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 
       17.19        18.90         4.73        12.10         1.78        14.07 
TCGA-19-5959 TCGA-19-5960 TCGA-19-A60I TCGA-19-A6J4 TCGA-19-A6J5 TCGA-26-1438 
       16.80        14.96        17.79         3.98        28.54        10.03 
TCGA-26-1439 TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 
       13.87         9.73        31.33         7.13         9.37         9.40 
TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-26-A7UX 
        8.88        18.97         1.58         7.92         2.33        19.33 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 
        5.06        16.60         9.86        24.23        40.54        21.30 
TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 
       14.04        11.51        24.76        10.39        10.39        16.08 
TCGA-27-2524 TCGA-27-2526 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 
        7.59         2.86         0.20         2.53         9.21         8.35 
TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1757 TCGA-28-2502 
        7.63         8.48         1.22         1.55         0.13         0.66 
TCGA-28-2506 TCGA-28-2509 TCGA-28-2513 TCGA-28-5204 TCGA-28-5207 TCGA-28-5209 
        6.74         4.77         7.30        14.93        11.28        14.53 
TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5218 TCGA-28-5219 
       11.77        31.27        23.44        11.01         5.16        22.68 
TCGA-28-6450 TCGA-32-1970 TCGA-32-1976 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 
        5.42        15.39         0.49        15.85        19.50         1.18 
TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 
        4.67        12.69        14.86        16.93        12.23        20.78 
TCGA-32-2495 TCGA-32-2616 TCGA-32-2632 TCGA-32-2638 TCGA-32-4210 TCGA-32-4211 
       15.02         7.36         8.84        25.18         3.72        12.59 
TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 
       19.23         0.85        13.35         8.94         9.53         0.99 
TCGA-41-3393 TCGA-41-3915 TCGA-41-5651 TCGA-41-6646 TCGA-4W-AA9S TCGA-4W-AA9T 
        4.44        11.84        15.12        12.46         4.14        14.76 
TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 
        3.45        20.91         4.34        14.33         8.22         7.50 
TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 
        4.80         4.54         3.09         3.65         9.17         2.53 
TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 
       10.78        16.70         3.29        11.38        17.06         8.35 
TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 
       20.98         4.83         5.03         0.23         9.27         7.73 
TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 TCGA-OX-A56R TCGA-RR-A6KA 
        7.79         1.61        17.72        26.30         5.92         6.28 
TCGA-RR-A6KC TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-5395 TCGA-CS-5396 
       20.55         4.70         7.69        43.89        21.01         9.96 
TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6665 TCGA-CS-6670 TCGA-DB-5270 
        6.38        17.69        23.84        12.43         6.61       122.73 
TCGA-DB-5277 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XB TCGA-DB-A4XD TCGA-DB-A4XE 
       50.86        78.28        46.42        30.21        39.78        37.45 
TCGA-DB-A64O TCGA-DB-A64X TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66D TCGA-DH-A66G 
       25.48        18.51         8.02        30.21        27.81        17.19 
TCGA-DH-A7UT TCGA-DH-A7UV TCGA-DU-5849 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5872 
       13.38        18.61        14.56         8.45         6.81        17.49 
TCGA-DU-6392 TCGA-DU-6395 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6402 TCGA-DU-6403 
      211.17        49.02        65.75         1.22         7.04        11.64 
TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6410 TCGA-DU-7006 
      133.74        19.89        16.83        94.52         7.96        11.47 
TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 
      156.23       138.28        14.99       105.21         6.54         8.84 
TCGA-DU-7014 TCGA-DU-7015 TCGA-DU-7292 TCGA-DU-7301 TCGA-DU-7306 TCGA-DU-7309 
      117.40        90.77         7.96        25.91        41.98         2.76 
TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-A5TR 
       23.74        14.60        20.68        19.13        16.96        12.59 
TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S6 TCGA-DU-A76K 
        4.96         3.65         5.65        12.20        77.98        11.41 
TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TD 
       26.76         7.13        21.30       124.50        77.88         7.50 
TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5304 TCGA-E1-5322 TCGA-E1-A7Z6 TCGA-F6-A8O4 
        0.56        50.14        41.13       130.78        32.35         0.20 
TCGA-FG-5962 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 
       47.77        36.82        18.77        24.99        23.97        18.44 
TCGA-FG-7634 TCGA-FG-7643 TCGA-FG-8182 TCGA-FG-8186 TCGA-FG-A4MU TCGA-FG-A4MW 
       15.35        20.09        13.68        16.01        10.72        18.38 
TCGA-FG-A60L TCGA-FG-A70Z TCGA-FG-A711 TCGA-FG-A87Q TCGA-HT-7473 TCGA-HT-7475 
       16.41        10.78        48.69         5.72        16.54        17.42 
TCGA-HT-7477 TCGA-HT-7604 TCGA-HT-7610 TCGA-HT-7688 TCGA-HT-7692 TCGA-HT-7693 
       24.26       122.47        56.09        31.69         2.96        17.52 
TCGA-HT-7860 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-8011 TCGA-HT-8013 TCGA-HT-8104 
        0.49         3.72        11.28        16.24        63.55        12.23 
TCGA-HT-8108 TCGA-HT-8110 TCGA-HT-8114 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A5R5 
        2.50        13.78        34.19        15.72         0.23         0.13 
TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RC TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A619 
        0.07        27.35         5.33         1.81        16.14        21.40 
TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O 
       17.65         2.43        10.52        15.35        11.05         0.10 
TCGA-HW-7495 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KM TCGA-KT-A7W1 TCGA-P5-A5EV 
        4.31        17.82        20.35        20.71        14.40         0.23 
TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A72U TCGA-P5-A731 TCGA-P5-A733 
        2.30         4.11         5.88         0.16         9.01        13.61 
TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CX TCGA-QH-A6X3 TCGA-QH-A6X9 
       19.33        14.83        14.53        12.23        10.29         1.91 
TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A870 TCGA-RY-A845 TCGA-S9-A6TY TCGA-S9-A6U0 
       16.50         5.03        12.99        19.59        31.33        22.95 
TCGA-S9-A6WM TCGA-S9-A6WO TCGA-S9-A7IQ TCGA-S9-A7IX TCGA-S9-A7IZ TCGA-S9-A7J0 
       19.86        18.61        36.13        22.32         7.13        20.02 
TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-TM-A7C3 
       15.06        13.12        28.37       169.84        10.39        49.45 
TCGA-TM-A7C4 TCGA-TM-A7CA TCGA-TM-A84B TCGA-TM-A84H TCGA-TM-A84M TCGA-TQ-A7RH 
       48.33        34.78        24.92        30.44        24.79        15.98 
TCGA-VW-A7QS TCGA-VW-A8FI TCGA-WY-A85E 
       23.21         8.05        20.81 

$`AMP PEAK 15(7Q32.3) WILD-TYPE`
TCGA-02-0007 TCGA-02-0010 TCGA-02-0011 TCGA-02-0024 TCGA-02-0026 TCGA-02-0028 
       23.18        35.41        20.71        53.10        24.59        90.58 
TCGA-02-0039 TCGA-02-0047 TCGA-02-0048 TCGA-02-0058 TCGA-02-0060 TCGA-02-0068 
       10.52        14.73         3.22         8.35         6.02        26.43 
TCGA-02-0069 TCGA-02-0084 TCGA-02-0104 TCGA-02-0114 TCGA-02-0338 TCGA-02-0339 
       28.70        12.62        65.00        99.98        10.59        12.39 
TCGA-02-0432 TCGA-02-2483 TCGA-06-0122 TCGA-06-0127 TCGA-06-0129 TCGA-06-0142 
       47.11        15.32         6.15         3.98        33.67         2.20 
TCGA-06-0146 TCGA-06-0158 TCGA-06-0160 TCGA-06-0165 TCGA-06-0178 TCGA-06-0219 
       20.09        10.82        11.80        10.65        88.14         0.72 
TCGA-06-0240 TCGA-06-0410 TCGA-06-1805 TCGA-06-2565 TCGA-06-2566 TCGA-06-2569 
       20.42         4.70        33.90        16.64         5.98         0.43 
TCGA-06-2570 TCGA-06-5416 TCGA-06-6389 TCGA-06-6693 TCGA-06-6701 TCGA-06-A5U0 
       31.50         6.71         7.79       120.56         4.96         4.70 
TCGA-06-A7TL TCGA-08-0245 TCGA-08-0246 TCGA-08-0344 TCGA-08-0350 TCGA-08-0351 
        5.42        37.84         4.18       115.86        29.23        65.33 
TCGA-08-0353 TCGA-08-0355 TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 TCGA-08-0521 
        8.42        24.56        42.15        11.08        19.59         4.80 
TCGA-08-0524 TCGA-12-0615 TCGA-12-1091 TCGA-12-1602 TCGA-12-3652 TCGA-14-0736 
        7.27        15.35        33.21         6.77        34.92        15.12 
TCGA-14-0740 TCGA-14-0862 TCGA-14-0865 TCGA-14-1402 TCGA-14-1452 TCGA-14-1453 
       11.97         2.89        16.50        32.05         7.10         1.15 
TCGA-14-1821 TCGA-14-3477 TCGA-15-1444 TCGA-15-1447 TCGA-16-0850 TCGA-16-1056 
       17.79         3.78        50.53        53.19        16.37        14.01 
TCGA-16-1060 TCGA-19-0964 TCGA-19-1388 TCGA-19-1789 TCGA-19-2620 TCGA-19-2621 
        9.14         3.39        12.95         3.25         4.87         1.08 
TCGA-19-2625 TCGA-19-5951 TCGA-19-5956 TCGA-26-5133 TCGA-26-5134 TCGA-27-1836 
        4.08         8.02        22.49        14.86         5.49        30.05 
TCGA-27-2527 TCGA-27-2528 TCGA-28-1756 TCGA-28-2514 TCGA-28-5208 TCGA-28-5216 
       14.40        15.78         2.83         5.26        17.88        13.64 
TCGA-28-5220 TCGA-32-1973 TCGA-32-1977 TCGA-32-2615 TCGA-32-2634 TCGA-32-4208 
       12.76        21.07         0.10        15.95        22.78        21.14 
TCGA-32-4213 TCGA-32-4719 TCGA-41-4097 TCGA-76-6193 TCGA-CS-4943 TCGA-CS-4944 
       19.86        10.85         0.20         2.70        18.15        10.62 
TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-6290 TCGA-CS-6666 TCGA-CS-6667 
       64.64        40.18         0.10        17.95         8.48         7.56 
TCGA-CS-6668 TCGA-CS-6669 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 
        8.02         7.40        81.96        75.25        47.93        72.92 
TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-A4XA TCGA-DB-A4XC TCGA-DB-A4XF 
       50.17        44.52        36.56        18.84        46.72        33.57 
TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R 
       72.95        31.63        24.20        30.12         5.98        31.40 
TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A75K TCGA-DB-A75L 
       27.45        27.81        29.23        14.40        12.10        11.24 
TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 
       17.88        30.74        16.18        19.96        31.82        30.31 
TCGA-DH-5143 TCGA-DH-A66B TCGA-DH-A66F TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UU 
       14.40        42.05        17.19        54.25        13.12         3.45 
TCGA-DU-5847 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5870 TCGA-DU-5871 
       18.02        17.46         6.74        13.38       182.33        18.94 
TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6401 
       15.16        52.11        22.42        75.16        46.06        87.45 
TCGA-DU-6408 TCGA-DU-6542 TCGA-DU-7007 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 
      114.08         7.73        62.96        30.67        26.30        10.36 
TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7302 TCGA-DU-7304 
       94.32        18.94        44.02        62.01        60.30        23.31 
TCGA-DU-8158 TCGA-DU-8164 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TS 
        5.10        21.40        15.48        14.17        14.24        15.12 
TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A7T6 TCGA-DU-A7TB 
        8.65         2.70         7.23         5.98        17.98        42.31 
TCGA-DU-A7TC TCGA-DU-A7TG TCGA-E1-5303 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 
       23.51        44.42        67.46        79.99        57.93       134.27 
TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-A7YO TCGA-E1-A7YV TCGA-E1-A7YW TCGA-EZ-7264 
       78.21        95.57        75.02        32.45        36.82        14.33 
TCGA-F6-A8O3 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-6689 TCGA-FG-7636 TCGA-FG-7638 
        0.23        25.48        34.36        14.93        17.88        22.55 
TCGA-FG-7641 TCGA-FG-8181 TCGA-FG-8185 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 
       20.61        12.95        14.24        20.09        14.96        22.52 
TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K 
       32.61        38.27        18.71        23.70        14.76        17.82 
TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A710 TCGA-FG-A713 
       15.02        16.44        22.26        28.54        36.66        20.45 
TCGA-FG-A87N TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 
       13.58        27.52         0.10         6.67        11.54        40.11 
TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7474 TCGA-HT-7476 TCGA-HT-7478 TCGA-HT-7479 
        0.13         0.03         3.75         6.54         6.38        40.34 
TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 
       75.19        95.93       106.95       172.77         4.01         5.03 
TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 
       29.85        23.18         4.57        17.29         3.16        22.06 
TCGA-HT-7609 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 
       45.99        57.60         0.23        14.27         0.16        16.24 
TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7689 
        0.76        44.68         6.05        42.74         0.10        14.96 
TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 
        0.10         0.10         6.90        14.53        39.48        19.23 
TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 
       39.09         0.23        50.63        23.61        37.15         0.33 
TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7902 TCGA-HT-8010 
        0.13         3.68         5.33        35.47        31.43         1.64 
TCGA-HT-8012 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8105 TCGA-HT-8106 
        9.40         0.10        37.87        33.01         6.25         0.10 
TCGA-HT-8107 TCGA-HT-8109 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8563 TCGA-HT-A4DV 
        0.46         5.56         0.23        29.59        28.27        26.04 
TCGA-HT-A5R7 TCGA-HT-A5RB TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A618 TCGA-HT-A61B 
       20.22         0.10         2.70        16.93        16.83        17.52 
TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7493 
       29.92        19.89         8.32        19.23        40.18        35.90 
TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-A5KK TCGA-HW-A5KL TCGA-IK-7675 
       21.70        21.60        19.59        12.76        20.81        19.00 
TCGA-IK-8125 TCGA-KT-A74X TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5F2 
       42.77        14.40         6.71         1.64         2.37         7.63 
TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 
        0.76         1.28        10.42        13.25        11.64         0.20 
TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CW 
       15.16         2.53        12.62        15.85        14.04        13.61 
TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A86X 
        2.20         9.17        14.53        16.34        16.73        11.08 
TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y 
       88.83        94.03        32.65        59.38        30.87         5.46 
TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU 
        9.90        28.08         2.07        30.67        62.17        87.12 
TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TZ TCGA-S9-A6U1 TCGA-S9-A6U2 
       18.77        37.84        34.49        28.70        17.62        23.64 
TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB 
       32.61        16.08        98.24        95.93         5.85       106.39 
TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL 
       69.50        72.59        80.12        32.45        84.99        31.10 
TCGA-S9-A6WN TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IS TCGA-S9-A7IY TCGA-S9-A7J1 
       15.91        15.16        14.07         7.92        23.51         8.19 
TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QZ TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 
        2.04        17.03        13.02        99.06        30.05        98.63 
TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C5 TCGA-TM-A7CF TCGA-TM-A84C 
       31.59        18.71        11.97        49.32        48.39        16.18 
TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84O 
       59.05        40.64        28.08        24.16        40.83        33.24 
TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RW TCGA-VM-A8C8 
       25.38        18.61        14.93        23.80        26.99        43.04 
TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CH 
       30.08        13.51         0.10         7.89        35.93        23.47 
TCGA-VV-A829 TCGA-VV-A86M TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 
       37.05        16.01        51.06        13.32        43.96        39.88 
TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D 
       43.40        45.80        46.88        37.71 

  AMP PEAK 15(7Q32.3) MUTATED AMP PEAK 15(7Q32.3) WILD-TYPE 
                         0.07                          0.03 
  AMP PEAK 15(7Q32.3) MUTATED AMP PEAK 15(7Q32.3) WILD-TYPE 
                       211.17                        182.33 
  AMP PEAK 15(7Q32.3) MUTATED AMP PEAK 15(7Q32.3) WILD-TYPE 
                       12.660                        18.085 
[1] "0.1 - 211.2 (12.7)" "0.0 - 182.3 (18.1)"
[1] "hr=" "3.1"
D15V2, continuous
D15V3, binary
                               cls
clus                              0   1
  AMP PEAK 15(7Q32.3) MUTATED   470 170
  AMP PEAK 15(7Q32.3) WILD-TYPE 100 302
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 15(7Q32.3) MUTATED    470  170
  AMP PEAK 15(7Q32.3) WILD-TYPE  100  302
                        clus
vv                       AMP PEAK 15(7Q32.3) MUTATED
  BRAIN                                          470
  CENTRAL NERVOUS SYSTEM                         170
                        clus
vv                       AMP PEAK 15(7Q32.3) WILD-TYPE
  BRAIN                                            100
  CENTRAL NERVOUS SYSTEM                           302
[1] 2 2
[1] FALSE
D15V4, binary
                               cls
clus                              0   1
  AMP PEAK 15(7Q32.3) MUTATED   268 372
  AMP PEAK 15(7Q32.3) WILD-TYPE 162 240
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 15(7Q32.3) MUTATED    268  372
  AMP PEAK 15(7Q32.3) WILD-TYPE  162  240
        clus
vv       AMP PEAK 15(7Q32.3) MUTATED AMP PEAK 15(7Q32.3) WILD-TYPE
  FEMALE                         268                           162
  MALE                           372                           240
[1] 2 2
[1] FALSE
D15V5, continuous
                               vv
clus                            ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  AMP PEAK 15(7Q32.3) MUTATED            71                            20
  AMP PEAK 15(7Q32.3) WILD-TYPE         105                             7
                               vv
clus                            OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  AMP PEAK 15(7Q32.3) MUTATED                 47                52
  AMP PEAK 15(7Q32.3) WILD-TYPE               71               126
                               vv
clus                            TREATED PRIMARY GBM
  AMP PEAK 15(7Q32.3) MUTATED                    12
  AMP PEAK 15(7Q32.3) WILD-TYPE                   6
                               vv
clus                            UNTREATED PRIMARY (DE NOVO) GBM
  AMP PEAK 15(7Q32.3) MUTATED                               438
  AMP PEAK 15(7Q32.3) WILD-TYPE                              87
D15V6, multiclass
                                 clus
vv                                AMP PEAK 15(7Q32.3) MUTATED
  ASTROCYTOMA                                              71
  GLIOBLASTOMA MULTIFORME (GBM)                            20
  OLIGOASTROCYTOMA                                         47
  OLIGODENDROGLIOMA                                        52
  TREATED PRIMARY GBM                                      12
  UNTREATED PRIMARY (DE NOVO) GBM                         438
                                 clus
vv                                AMP PEAK 15(7Q32.3) WILD-TYPE
  ASTROCYTOMA                                               105
  GLIOBLASTOMA MULTIFORME (GBM)                               7
  OLIGOASTROCYTOMA                                           71
  OLIGODENDROGLIOMA                                         126
  TREATED PRIMARY GBM                                         6
  UNTREATED PRIMARY (DE NOVO) GBM                            87
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D15V7, binary
                               cls
clus                              0   1
  AMP PEAK 15(7Q32.3) MUTATED   347 293
  AMP PEAK 15(7Q32.3) WILD-TYPE 127 275
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 15(7Q32.3) MUTATED    347  293
  AMP PEAK 15(7Q32.3) WILD-TYPE  127  275
     clus
vv    AMP PEAK 15(7Q32.3) MUTATED AMP PEAK 15(7Q32.3) WILD-TYPE
  NO                          347                           127
  YES                         293                           275
[1] 2 2
[1] FALSE
                               vv
clus                            AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK 15(7Q32.3) MUTATED                                  1    11
  AMP PEAK 15(7Q32.3) WILD-TYPE                                0    10
                               vv
clus                            BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 15(7Q32.3) MUTATED                          50   556
  AMP PEAK 15(7Q32.3) WILD-TYPE                        14   366
D15V8, multiclass
                                  clus
vv                                 AMP PEAK 15(7Q32.3) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                           1
  ASIAN                                                     11
  BLACK OR AFRICAN AMERICAN                                 50
  WHITE                                                    556
                                  clus
vv                                 AMP PEAK 15(7Q32.3) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                             0
  ASIAN                                                       10
  BLACK OR AFRICAN AMERICAN                                   14
  WHITE                                                      366
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D15V9, binary
                               cls
clus                              0   1
  AMP PEAK 15(7Q32.3) MUTATED    13 549
  AMP PEAK 15(7Q32.3) WILD-TYPE  17 342
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 15(7Q32.3) MUTATED     13  549
  AMP PEAK 15(7Q32.3) WILD-TYPE   17  342
                        clus
vv                       AMP PEAK 15(7Q32.3) MUTATED
  HISPANIC OR LATINO                              13
  NOT HISPANIC OR LATINO                         549
                        clus
vv                       AMP PEAK 15(7Q32.3) WILD-TYPE
  HISPANIC OR LATINO                                17
  NOT HISPANIC OR LATINO                           342
[1] 2 2
[1] FALSE

Clustering(16) Variable = AMP PEAK 16(8Q24.21) MUTATION ANALYSIS
D16V1, survival
                                sevent
clus2                              0   1
  AMP PEAK 16(8Q24.21) MUTATED    87  74
  AMP PEAK 16(8Q24.21) WILD-TYPE 393 485
  AMP PEAK 16(8Q24.21) MUTATED AMP PEAK 16(8Q24.21) WILD-TYPE 
                           161                            878 
  AMP PEAK 16(8Q24.21) MUTATED AMP PEAK 16(8Q24.21) WILD-TYPE 
                            74                            485 
$`AMP PEAK 16(8Q24.21) MUTATED`
TCGA-02-0010 TCGA-02-0014 TCGA-02-0024 TCGA-02-0037 TCGA-02-0055 TCGA-02-0074 
       35.41        82.59        53.10         3.62         2.50        10.19 
TCGA-02-0075 TCGA-02-0084 TCGA-02-0104 TCGA-02-0325 TCGA-02-2483 TCGA-06-0128 
       20.84        12.62        65.00        10.62        15.32        22.72 
TCGA-06-0146 TCGA-06-0177 TCGA-06-0188 TCGA-06-0192 TCGA-06-0209 TCGA-06-0211 
       20.09         4.18        44.58        38.96         7.63        11.84 
TCGA-06-0409 TCGA-06-0414 TCGA-06-0686 TCGA-06-2557 TCGA-06-2569 TCGA-06-5856 
       72.36        35.11        14.20         1.08         0.43         3.75 
TCGA-06-6389 TCGA-06-6693 TCGA-06-6694 TCGA-06-6701 TCGA-08-0350 TCGA-08-0351 
        7.79       120.56         7.36         4.96        29.23        65.33 
TCGA-08-0516 TCGA-12-0616 TCGA-12-0818 TCGA-12-0819 TCGA-12-0827 TCGA-12-1092 
       19.59        14.73        91.76        24.79        38.76        21.73 
TCGA-12-1099 TCGA-12-1598 TCGA-12-1602 TCGA-12-3646 TCGA-12-3653 TCGA-14-0817 
        4.14        15.65         6.77        44.02        14.53         5.39 
TCGA-14-0865 TCGA-14-0867 TCGA-14-0871 TCGA-14-1453 TCGA-14-1456 TCGA-14-1825 
       16.50         2.04        28.93         1.15        40.96         7.63 
TCGA-14-3477 TCGA-19-1388 TCGA-19-1392 TCGA-19-2619 TCGA-19-A6J4 TCGA-19-A6J5 
        3.78        12.95         3.65         9.67         3.98        28.54 
TCGA-26-5133 TCGA-27-1834 TCGA-27-2521 TCGA-28-1746 TCGA-28-5204 TCGA-28-5215 
       14.86        40.54        10.39         0.20        14.93        11.01 
TCGA-28-5218 TCGA-28-5219 TCGA-32-1976 TCGA-32-1978 TCGA-32-2632 TCGA-32-4210 
        5.16        22.68         0.49        15.85         8.84         3.72 
TCGA-41-2573 TCGA-41-4097 TCGA-41-5651 TCGA-CS-4943 TCGA-CS-5393 TCGA-CS-6290 
        8.94         0.20        15.12        18.15        40.18        17.95 
TCGA-CS-6665 TCGA-CS-6666 TCGA-DB-5277 TCGA-DB-5281 TCGA-DB-A4XB TCGA-DB-A4XD 
       12.43         8.48        50.86        78.28        30.21        39.78 
TCGA-DB-A4XE TCGA-DB-A64X TCGA-DH-5143 TCGA-DH-A669 TCGA-DH-A66G TCGA-DH-A7UT 
       37.45        18.51        14.40        30.21        17.19        13.38 
TCGA-DU-5871 TCGA-DU-6399 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-7010 TCGA-DU-7013 
       18.94        65.75        94.52       114.08        14.99         8.84 
TCGA-DU-7014 TCGA-DU-7015 TCGA-DU-7304 TCGA-DU-8158 TCGA-DU-8163 TCGA-DU-8167 
      117.40        90.77        23.31         5.10        20.68        15.48 
TCGA-DU-A5TS TCGA-DU-A5TW TCGA-DU-A6S7 TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA 
       15.12         5.65         7.23        17.98       124.50        77.88 
TCGA-DU-A7TC TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-A7YW 
       23.51        67.46        41.13        79.99        57.93        36.82 
TCGA-FG-5962 TCGA-FG-5964 TCGA-FG-6691 TCGA-FG-7634 TCGA-FG-8188 TCGA-FG-A4MT 
       47.77        34.36        23.97        15.35        14.96        38.27 
TCGA-FG-A4MY TCGA-FG-A70Y TCGA-HT-7473 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 
       23.70        28.54        16.54        17.42         6.54        24.26 
TCGA-HT-7479 TCGA-HT-7482 TCGA-HT-7604 TCGA-HT-7676 TCGA-HT-7689 TCGA-HT-7855 
       40.34       106.95       122.47         0.16        14.96        19.23 
TCGA-HT-7873 TCGA-HT-7879 TCGA-HT-8011 TCGA-HT-8013 TCGA-HT-8106 TCGA-HT-8111 
       23.61         3.68        16.24        63.55         0.10         0.23 
TCGA-HT-A5R7 TCGA-HT-A614 TCGA-HT-A616 TCGA-HT-A74J TCGA-HT-A74O TCGA-P5-A5F1 
       20.22         2.70         1.81        10.52         0.10         5.88 
TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A72W TCGA-QH-A6CW TCGA-QH-A6XA TCGA-RY-A83Z 
        7.63         0.76        10.42        13.61        16.50         9.90 
TCGA-S9-A6TY TCGA-S9-A6U6 TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WO TCGA-S9-A6WP 
       31.33        16.08        80.12        32.45        18.61        15.16 
TCGA-S9-A7QW TCGA-S9-A7QX TCGA-TM-A7CF TCGA-TM-A84H TCGA-TM-A84Q TCGA-TM-A84T 
       15.06        13.12        48.39        30.44        25.38        23.80 
TCGA-TQ-A7RH TCGA-TQ-A7RW TCGA-VM-A8C8 TCGA-VM-A8CA TCGA-WY-A858 
       15.98        26.99        43.04        13.51        43.96 

$`AMP PEAK 16(8Q24.21) WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0011 
       11.77         4.73        18.35        23.18        10.59        20.71 
TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0025 TCGA-02-0026 
       20.61        87.06        77.65        20.12        42.74        24.59 
TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0038 TCGA-02-0039 
       12.16        90.58         2.83        14.14        10.72        10.52 
TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 
       18.31         6.87        14.73         3.22        15.09        12.59 
TCGA-02-0054 TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 
        6.54        19.86         8.35         9.57         6.02        19.73 
TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 TCGA-02-0079 TCGA-02-0080 
       26.43        28.70        25.05         5.49        27.25        89.72 
TCGA-02-0083 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 
       22.72        51.32         8.81        57.76        16.96         3.48 
TCGA-02-0102 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 TCGA-02-0114 
       27.02        11.67        17.65        23.18        92.65        99.98 
TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 
       15.65        48.95        16.54        16.93        17.72        10.75 
TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 
       14.47         3.98        13.87        14.20        15.95        12.23 
TCGA-02-0321 TCGA-02-0324 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 
        9.90         7.73         7.33        15.91        25.71         4.37 
TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 
       25.12        10.59        12.39        14.50        10.55        47.11 
TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 
       11.34         9.27        16.21         3.35        16.80        12.92 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 
       15.45        20.32         2.70         6.15        20.38        47.61 
TCGA-06-0126 TCGA-06-0127 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 
        6.94         3.98        33.67        12.95        25.35        14.30 
TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 
       26.70        24.23        11.90         0.20        10.29         2.20 
TCGA-06-0143 TCGA-06-0145 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 
       11.74         2.33        17.79        10.09         8.61        19.46 
TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 
       46.59        12.33        13.94        10.45         3.19        10.82 
TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 
        9.44        11.80         3.42        56.91        10.65         5.85 
TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 
       19.66         3.29        13.12         4.47         3.22         4.04 
TCGA-06-0176 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 
       91.00        88.14        20.25         3.65        69.90        73.84 
TCGA-06-0187 TCGA-06-0189 TCGA-06-0190 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 
       27.22        15.42        10.42         4.67         7.40         5.56 
TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0210 TCGA-06-0213 TCGA-06-0214 
        0.39         7.66         8.42         7.40         0.53        15.02 
TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 
       24.16         0.72        19.82        13.64        13.32        20.42 
TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0410 TCGA-06-0412 
       48.69        10.82         9.01         0.26         4.70         9.57 
TCGA-06-0413 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 
        3.16        12.62         5.75         5.75         9.80         2.10 
TCGA-06-0650 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 
       23.57        26.40        46.88         7.86         2.70         2.70 
TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 
        0.92        43.46        46.19         5.65         7.17        40.41 
TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1087 
       16.57        20.78        26.76        23.93         6.84         4.04 
TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-1806 
       26.79        11.84        15.32        13.61        33.90        15.32 
TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 
       12.49         4.93        17.65        12.56        30.64         5.95 
TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 
       16.64         5.98         4.37        31.50        11.74         3.55 
TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 
        8.35         4.54         8.81         8.98         8.55         6.71 
TCGA-06-5418 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6390 TCGA-06-6391 
        2.73         6.15         4.57         5.23         5.39         1.48 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-A5U0 
        8.32        12.85         4.77         1.55         4.77         4.70 
TCGA-06-A5U1 TCGA-06-A6S0 TCGA-06-A6S1 TCGA-06-A7TK TCGA-06-A7TL TCGA-08-0244 
        1.87         3.12         2.56         5.39         5.42        22.68 
TCGA-08-0245 TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 
       37.84         4.18       115.86         1.74         8.42        25.71 
TCGA-08-0348 TCGA-08-0349 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 
       12.16         9.80         1.28         8.42        17.95        24.56 
TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 
       31.10        37.58        22.29         3.39        12.23        14.93 
TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 
       18.02        15.35        13.97         0.72        12.56         4.27 
TCGA-08-0512 TCGA-08-0514 TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 
       42.15        11.08        58.68        19.33        10.75         4.80 
TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 TCGA-12-0618 
        7.27        15.98        18.41         7.56        15.35        12.99 
TCGA-12-0619 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 
       34.92        10.45         7.59        94.78         0.10        38.17 
TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 
       25.97        26.66        12.13         3.65        20.38        28.41 
TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 
       15.06        53.85        43.23         7.63         9.73        14.93 
TCGA-12-0780 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 TCGA-12-0828 
       14.86        18.48        10.62        23.51        27.78         8.94 
TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1093 
       20.58       127.59         5.82         7.59        33.21        15.98 
TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-12-1599 
       12.23        15.85         9.11        14.53         3.98        25.68 
TCGA-12-1600 TCGA-12-3644 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 
       14.73        59.77        26.93        15.22        10.95        12.69 
TCGA-12-3652 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 
       34.92        14.93         3.22         2.04        15.12        11.97 
TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 
        0.95         6.21        23.05         2.24        11.24        13.78 
TCGA-14-0812 TCGA-14-0813 TCGA-14-0862 TCGA-14-0866 TCGA-14-1034 TCGA-14-1037 
        3.25         1.35         2.89        26.33        15.95        19.30 
TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 
        0.79         1.38         1.12         3.75        32.05        58.78 
TCGA-14-1451 TCGA-14-1452 TCGA-14-1454 TCGA-14-1455 TCGA-14-1458 TCGA-14-1459 
       23.11         7.10        30.18         0.92         6.67        12.43 
TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 TCGA-14-1823 TCGA-14-1827 TCGA-14-1829 
        0.99         1.97        17.79        17.85         5.88         7.17 
TCGA-14-2554 TCGA-14-2555 TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 
       17.49         7.96         3.42        13.78        50.53        19.10 
TCGA-15-1447 TCGA-15-1449 TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 
       53.19        13.28         3.91        17.59        26.07        16.37 
TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 
        4.31        29.03         4.57        10.29        14.01         9.14 
TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 
       21.24        13.97         6.41        11.77        21.90         8.61 
TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 
        0.66        14.27         3.39        10.75         9.07         5.95 
TCGA-19-1389 TCGA-19-1390 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 
        4.64        25.38         7.17        12.66         3.25         0.13 
TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 
        4.87         1.08         7.53         0.16         4.08        24.23 
TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 
        7.00         7.04         6.64        17.19         8.02        18.90 
TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 
        4.73        12.10         1.78        22.49        14.07        16.80 
TCGA-19-5960 TCGA-19-A60I TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 TCGA-26-1442 
       14.96        17.79        10.03        13.87         9.73        31.33 
TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 
        7.13         9.37         9.40         5.49         8.88        18.97 
TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-26-A7UX TCGA-27-1830 TCGA-27-1831 
        1.58         7.92         2.33        19.33         5.06        16.60 
TCGA-27-1832 TCGA-27-1833 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 
        9.86        24.23        21.30        30.05        14.04        11.51 
TCGA-27-2518 TCGA-27-2519 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 
       24.76        10.39        16.08         7.59         2.86        14.40 
TCGA-27-2528 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 
       15.78         2.53         9.21         8.35         7.63         8.48 
TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 
        1.22         1.55         2.83         0.13         0.66         6.74 
TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 
        4.77         7.30         5.26        11.28        17.88        14.53 
TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5216 TCGA-28-5220 TCGA-28-6450 
       11.77        31.27        23.44        13.64        12.76         5.42 
TCGA-32-1970 TCGA-32-1973 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 
       15.39        21.07         0.10        19.50         1.18         4.67 
TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 
       12.69        14.86        16.93        12.23        20.78        15.02 
TCGA-32-2615 TCGA-32-2616 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4211 
       15.95         7.36        22.78        25.18        21.14        12.59 
TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2575 
       19.86        10.85        19.23         0.85        13.35         9.53 
TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-6646 TCGA-4W-AA9S TCGA-4W-AA9T 
        0.99         4.44        11.84        12.46         4.14        14.76 
TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 
        3.45        20.91         4.34        14.33         8.22         7.50 
TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 
        4.80         4.54         3.09         3.65         9.17         2.53 
TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 
       10.78        16.70         3.29         2.70        11.38        17.06 
TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 
        8.35        20.98         4.83         5.03         0.23         9.27 
TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 TCGA-OX-A56R 
        7.73         7.79         1.61        17.72        26.30         5.92 
TCGA-RR-A6KA TCGA-RR-A6KC TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4944 
        6.28        20.55         4.70         7.69        43.89        10.62 
TCGA-CS-5390 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 
       64.64         0.10        21.01         9.96         6.38        17.69 
TCGA-CS-6188 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 
       23.84         7.56         8.02         7.40         6.61       122.73 
TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5278 TCGA-DB-5279 
       81.96        75.25        47.93        72.92        50.17        44.52 
TCGA-DB-5280 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XC TCGA-DB-A4XF TCGA-DB-A4XG 
       36.56        46.42        18.84        46.72        33.57        72.95 
TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R 
       31.63        24.20        25.48        30.12         5.98        31.40 
TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A75K TCGA-DB-A75L 
       27.45        27.81        29.23        14.40        12.10        11.24 
TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 
       17.88        30.74        16.18        19.96        31.82        30.31 
TCGA-DH-5144 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A7UR TCGA-DH-A7US 
        8.02        42.05        27.81        17.19        54.25        13.12 
TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 
        3.45        18.61        18.02        14.56        17.46         6.74 
TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5872 TCGA-DU-5874 
       13.38         8.45         6.81       182.33        17.49        15.16 
TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 
      211.17        52.11        22.42        49.02        75.16        46.06 
TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 
        1.22        87.45         7.04        11.64       133.74        19.89 
TCGA-DU-6406 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 
       16.83         7.96         7.73        11.47        62.96       156.23 
TCGA-DU-7009 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 
      138.28       105.21         6.54        30.67        26.30        10.36 
TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 
        7.96        94.32        18.94        44.02        62.01        25.91 
TCGA-DU-7302 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8164 
       60.30        41.98         2.76        23.74        14.60        21.40 
TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TT 
       19.13        16.96        14.17        14.24        12.59         4.96 
TCGA-DU-A5TU TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S8 
        3.65        12.20         8.65         2.70        77.98         5.98 
TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7TB TCGA-DU-A7TD 
       11.41        26.76         7.13        21.30        42.31         7.50 
TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 
       44.42         0.56        50.14       134.27        78.21        95.57 
TCGA-E1-5322 TCGA-E1-A7YO TCGA-E1-A7YV TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 
      130.78        75.02        32.45        32.35        14.33         0.23 
TCGA-F6-A8O4 TCGA-FG-5963 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 
        0.20        25.48        36.82        18.77        14.93        24.99 
TCGA-FG-6692 TCGA-FG-7636 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 
       18.44        17.88        22.55        20.61        20.09        12.95 
TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8189 TCGA-FG-8191 
       13.68        14.24        16.01        20.09        22.52        32.61 
TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L 
       10.72        18.38        18.71        14.76        17.82        16.41 
TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 
       15.02        16.44        22.26        10.78        36.66        48.69 
TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 
       20.45        13.58         5.72        27.52         0.10         6.67 
TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7474 TCGA-HT-7478 
       11.54        40.11         0.13         0.03         3.75         6.38 
TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 
       75.19        95.93       172.77         4.01         5.03        29.85 
TCGA-HT-7603 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 
       23.18         4.57        17.29         3.16        22.06        45.99 
TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7677 TCGA-HT-7680 
       56.09        57.60         0.23        14.27        16.24         0.76 
TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7690 
       44.68         6.05        42.74         0.10        31.69         0.10 
TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 
        0.10         2.96        17.52         6.90        14.53        39.48 
TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7874 TCGA-HT-7875 
       39.09         0.23        50.63         0.49        37.15         0.33 
TCGA-HT-7877 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 
        0.13         5.33        35.47         3.72        11.28        31.43 
TCGA-HT-8010 TCGA-HT-8012 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 
        1.64         9.40         0.10        37.87        33.01        12.23 
TCGA-HT-8105 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8113 
        6.25         0.46         2.50         5.56        13.78        29.59 
TCGA-HT-8114 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 
       34.19        28.27        15.72         0.23        26.04         0.13 
TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A615 TCGA-HT-A617 
        0.07        27.35         0.10         5.33        16.93        16.14 
TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74K 
       16.83        21.40        17.52        17.65         2.43        15.35 
TCGA-HT-A74L TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 
       11.05        29.92        19.89         8.32        19.23        40.18 
TCGA-HW-7493 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 
       35.90         4.31        21.70        21.60        19.59        17.82 
TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 
       20.35        12.76        20.81        20.71        19.00        42.77 
TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY 
       14.40        14.40         0.23         6.71         1.64         2.37 
TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72X TCGA-P5-A72Z 
        2.30         4.11         1.28         0.16        13.25        11.64 
TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V 
        0.20         9.01        13.61        15.16         2.53        12.62 
TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CX 
       15.85        14.04        19.33        14.83        14.53        12.23 
TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 
        2.20         9.17        10.29        14.53        16.34        16.73 
TCGA-QH-A6X9 TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML 
        1.91         5.03        11.08        12.99        88.83        94.03 
TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A840 TCGA-RY-A843 
       32.65        59.38        30.87         5.46        28.08         2.07 
TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW 
       19.59        30.67        62.17        87.12        18.77        37.84 
TCGA-S9-A6TX TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 
       34.49        28.70        22.95        17.62        23.64        32.61 
TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE 
       98.24        95.93         5.85       106.39        69.50        72.59 
TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WQ TCGA-S9-A7IQ 
       84.99        31.10        19.86        15.91        14.07        36.13 
TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 
        7.92        22.32        23.51         7.13        20.02         8.19 
TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 
        2.04        17.03        28.37        13.02       169.84        10.39 
TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z 
       99.06        30.05        98.63        31.59        18.71        11.97 
TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A84B TCGA-TM-A84C 
       49.45        48.33        49.32        34.78        24.92        16.18 
TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M 
       59.05        40.64        28.08        24.16        40.83        24.79 
TCGA-TM-A84O TCGA-TM-A84R TCGA-TM-A84S TCGA-VM-A8C9 TCGA-VM-A8CB TCGA-VM-A8CD 
       33.24        18.61        14.93        30.08         0.10         7.89 
TCGA-VM-A8CE TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI 
       35.93        23.47        37.05        16.01        23.21         8.05 
TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C 
       51.06        13.32        39.88        43.40        45.80        46.88 
TCGA-WY-A85D TCGA-WY-A85E 
       37.71        20.81 

  AMP PEAK 16(8Q24.21) MUTATED AMP PEAK 16(8Q24.21) WILD-TYPE 
                          0.10                           0.03 
  AMP PEAK 16(8Q24.21) MUTATED AMP PEAK 16(8Q24.21) WILD-TYPE 
                        124.50                         211.17 
  AMP PEAK 16(8Q24.21) MUTATED AMP PEAK 16(8Q24.21) WILD-TYPE 
                        16.500                         14.315 
[1] "0.1 - 124.5 (16.5)" "0.0 - 211.2 (14.3)"
[1] "hr=" "1.5"
D16V2, continuous
D16V3, binary
                                cls
clus                               0   1
  AMP PEAK 16(8Q24.21) MUTATED    69  92
  AMP PEAK 16(8Q24.21) WILD-TYPE 501 380
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 16(8Q24.21) MUTATED     69   92
  AMP PEAK 16(8Q24.21) WILD-TYPE  501  380
                        clus
vv                       AMP PEAK 16(8Q24.21) MUTATED
  BRAIN                                            69
  CENTRAL NERVOUS SYSTEM                           92
                        clus
vv                       AMP PEAK 16(8Q24.21) WILD-TYPE
  BRAIN                                             501
  CENTRAL NERVOUS SYSTEM                            380
[1] 2 2
[1] FALSE
D16V4, binary
                                cls
clus                               0   1
  AMP PEAK 16(8Q24.21) MUTATED    64  97
  AMP PEAK 16(8Q24.21) WILD-TYPE 366 515
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 16(8Q24.21) MUTATED     64   97
  AMP PEAK 16(8Q24.21) WILD-TYPE  366  515
        clus
vv       AMP PEAK 16(8Q24.21) MUTATED AMP PEAK 16(8Q24.21) WILD-TYPE
  FEMALE                           64                            366
  MALE                             97                            515
[1] 2 2
[1] FALSE
D16V5, continuous
                                vv
clus                             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  AMP PEAK 16(8Q24.21) MUTATED            43                             2
  AMP PEAK 16(8Q24.21) WILD-TYPE         133                            25
                                vv
clus                             OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  AMP PEAK 16(8Q24.21) MUTATED                 27                22
  AMP PEAK 16(8Q24.21) WILD-TYPE               91               156
                                vv
clus                             TREATED PRIMARY GBM
  AMP PEAK 16(8Q24.21) MUTATED                     2
  AMP PEAK 16(8Q24.21) WILD-TYPE                  16
                                vv
clus                             UNTREATED PRIMARY (DE NOVO) GBM
  AMP PEAK 16(8Q24.21) MUTATED                                65
  AMP PEAK 16(8Q24.21) WILD-TYPE                             460
D16V6, multiclass
                                 clus
vv                                AMP PEAK 16(8Q24.21) MUTATED
  ASTROCYTOMA                                               43
  GLIOBLASTOMA MULTIFORME (GBM)                              2
  OLIGOASTROCYTOMA                                          27
  OLIGODENDROGLIOMA                                         22
  TREATED PRIMARY GBM                                        2
  UNTREATED PRIMARY (DE NOVO) GBM                           65
                                 clus
vv                                AMP PEAK 16(8Q24.21) WILD-TYPE
  ASTROCYTOMA                                                133
  GLIOBLASTOMA MULTIFORME (GBM)                               25
  OLIGOASTROCYTOMA                                            91
  OLIGODENDROGLIOMA                                          156
  TREATED PRIMARY GBM                                         16
  UNTREATED PRIMARY (DE NOVO) GBM                            460
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D16V7, binary
                                cls
clus                               0   1
  AMP PEAK 16(8Q24.21) MUTATED    64  97
  AMP PEAK 16(8Q24.21) WILD-TYPE 410 471
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 16(8Q24.21) MUTATED     64   97
  AMP PEAK 16(8Q24.21) WILD-TYPE  410  471
     clus
vv    AMP PEAK 16(8Q24.21) MUTATED AMP PEAK 16(8Q24.21) WILD-TYPE
  NO                            64                            410
  YES                           97                            471
[1] 2 2
[1] FALSE
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK 16(8Q24.21) MUTATED                                  0     1
  AMP PEAK 16(8Q24.21) WILD-TYPE                                1    20
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 16(8Q24.21) MUTATED                          12   145
  AMP PEAK 16(8Q24.21) WILD-TYPE                        52   777
D16V8, multiclass
                                  clus
vv                                 AMP PEAK 16(8Q24.21) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            0
  ASIAN                                                       1
  BLACK OR AFRICAN AMERICAN                                  12
  WHITE                                                     145
                                  clus
vv                                 AMP PEAK 16(8Q24.21) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              1
  ASIAN                                                        20
  BLACK OR AFRICAN AMERICAN                                    52
  WHITE                                                       777
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D16V9, binary
                                cls
clus                               0   1
  AMP PEAK 16(8Q24.21) MUTATED     6 139
  AMP PEAK 16(8Q24.21) WILD-TYPE  24 752
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 16(8Q24.21) MUTATED      6  139
  AMP PEAK 16(8Q24.21) WILD-TYPE   24  752
                        clus
vv                       AMP PEAK 16(8Q24.21) MUTATED
  HISPANIC OR LATINO                                6
  NOT HISPANIC OR LATINO                          139
                        clus
vv                       AMP PEAK 16(8Q24.21) WILD-TYPE
  HISPANIC OR LATINO                                 24
  NOT HISPANIC OR LATINO                            752
[1] 2 2
[1] FALSE

Clustering(17) Variable = AMP PEAK 17(9Q34.3) MUTATION ANALYSIS
D17V1, survival
                               sevent
clus2                             0   1
  AMP PEAK 17(9Q34.3) MUTATED    51  85
  AMP PEAK 17(9Q34.3) WILD-TYPE 429 474
  AMP PEAK 17(9Q34.3) MUTATED AMP PEAK 17(9Q34.3) WILD-TYPE 
                          136                           903 
  AMP PEAK 17(9Q34.3) MUTATED AMP PEAK 17(9Q34.3) WILD-TYPE 
                           85                           474 
$`AMP PEAK 17(9Q34.3) MUTATED`
TCGA-02-0001 TCGA-02-0014 TCGA-02-0025 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 
       11.77        82.59        42.74        15.09        12.59         6.54 
TCGA-02-0069 TCGA-02-0074 TCGA-02-0104 TCGA-02-0106 TCGA-02-0114 TCGA-02-0266 
       28.70        10.19        65.00        11.67        99.98        17.72 
TCGA-02-0281 TCGA-02-0285 TCGA-02-0325 TCGA-02-0332 TCGA-02-0456 TCGA-02-2483 
        3.98        13.87        10.62        25.71         3.35        15.32 
TCGA-06-0122 TCGA-06-0158 TCGA-06-0159 TCGA-06-0166 TCGA-06-0175 TCGA-06-0185 
        6.15        10.82         9.44         5.85         4.04        73.84 
TCGA-06-0188 TCGA-06-0195 TCGA-06-0216 TCGA-06-0410 TCGA-06-0413 TCGA-06-0414 
       44.58         7.40        24.16         4.70         3.16        35.11 
TCGA-06-0644 TCGA-06-0744 TCGA-06-1087 TCGA-06-2558 TCGA-06-2569 TCGA-06-5408 
       12.62        46.88         4.04        12.49         0.43        11.74 
TCGA-06-5415 TCGA-06-5418 TCGA-06-5859 TCGA-06-A6S0 TCGA-08-0386 TCGA-08-0516 
        8.55         2.73         4.57         3.12        18.02        19.59 
TCGA-08-0520 TCGA-12-0618 TCGA-12-0619 TCGA-12-0654 TCGA-12-0691 TCGA-12-0773 
       10.75        12.99        34.92         7.59        12.13        43.23 
TCGA-12-0776 TCGA-12-0818 TCGA-12-1088 TCGA-12-1096 TCGA-12-1098 TCGA-12-3646 
        9.73        91.76       127.59         9.11         3.98        44.02 
TCGA-12-5299 TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 TCGA-14-0867 
        3.22        13.78         3.25         1.35         5.39         2.04 
TCGA-14-1453 TCGA-14-1455 TCGA-14-1821 TCGA-14-3477 TCGA-15-1449 TCGA-16-0850 
        1.15         0.92        17.79         3.78        13.28        16.37 
TCGA-19-0962 TCGA-19-1388 TCGA-19-1390 TCGA-19-1392 TCGA-19-2620 TCGA-19-A6J5 
        0.66        12.95        25.38         3.65         4.87        28.54 
TCGA-26-5136 TCGA-26-6174 TCGA-27-1834 TCGA-27-1838 TCGA-28-1750 TCGA-28-1751 
       18.97         2.33        40.54        11.51         8.35         7.63 
TCGA-28-2509 TCGA-28-5204 TCGA-28-5215 TCGA-28-5216 TCGA-32-1976 TCGA-32-1979 
        4.77        14.93        11.01        13.64         0.49        19.50 
TCGA-32-1991 TCGA-32-2495 TCGA-32-2615 TCGA-41-2573 TCGA-41-2575 TCGA-41-3915 
       16.93        15.02        15.95         8.94         9.53        11.84 
TCGA-76-4934 TCGA-76-4935 TCGA-76-6280 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6290 
        2.53        10.78        11.38         9.96         6.38        17.95 
TCGA-CS-6665 TCGA-DB-A4XE TCGA-DB-A64R TCGA-DB-A64X TCGA-DH-5142 TCGA-DU-7010 
       12.43        37.45        31.40        18.51        30.31        14.99 
TCGA-DU-7298 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8168 
       18.94         5.10        23.74        21.40        19.13        14.17 
TCGA-DU-A5TT TCGA-DU-A76O TCGA-E1-5302 TCGA-E1-5304 TCGA-FG-A4MY TCGA-FG-A60K 
        4.96         7.13        50.14        41.13        23.70        17.82 
TCGA-FG-A6J3 TCGA-FG-A87N TCGA-HT-7468 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7483 
       22.26        13.58         6.67        24.26         6.38       172.77 
TCGA-HT-7601 TCGA-HT-7686 TCGA-HT-7873 TCGA-HT-A5RB TCGA-HT-A617 TCGA-HT-A61B 
        5.03        42.74        23.61         0.10        16.14        17.52 
TCGA-HT-A74J TCGA-HW-8319 TCGA-S9-A6TW TCGA-S9-A6WH TCGA-S9-A6WM TCGA-S9-A7QW 
       10.52        21.70        37.84        32.45        19.86        15.06 
TCGA-TM-A84F TCGA-TM-A84H TCGA-TM-A84T TCGA-WY-A85E 
       59.05        30.44        23.80        20.81 

$`AMP PEAK 17(9Q34.3) WILD-TYPE`
TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 TCGA-02-0011 
        4.73        18.35        23.18        10.59        35.41        20.71 
TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 TCGA-02-0026 
       20.61        87.06        77.65        20.12        53.10        24.59 
TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 
       12.16        90.58         2.83        14.14         3.62        10.72 
TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 TCGA-02-0055 
       10.52        18.31         6.87        14.73         3.22         2.50 
TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 
       19.86         8.35         9.57         6.02        19.73        26.43 
TCGA-02-0070 TCGA-02-0071 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 
       25.05         5.49        20.84        27.25        89.72        22.72 
TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 
       12.62        51.32         8.81        57.76        16.96         3.48 
TCGA-02-0102 TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 TCGA-02-0115 TCGA-02-0116 
       27.02        17.65        23.18        92.65        15.65        48.95 
TCGA-02-0258 TCGA-02-0260 TCGA-02-0269 TCGA-02-0271 TCGA-02-0289 TCGA-02-0290 
       16.54        16.93        10.75        14.47        14.20        15.95 
TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0326 TCGA-02-0330 TCGA-02-0333 
       12.23         9.90         7.73         7.33        15.91         4.37 
TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 
       25.12        10.59        12.39        14.50        10.55        47.11 
TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-2466 TCGA-02-2470 TCGA-02-2485 
       11.34         9.27        16.21        16.80        12.92        15.45 
TCGA-02-2486 TCGA-06-0119 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 
       20.32         2.70        20.38        47.61         6.94         3.98 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 
       22.72        33.67        12.95        25.35        14.30        26.70 
TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 
       24.23        11.90         0.20        10.29         2.20        11.74 
TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 
        2.33        20.09        17.79        10.09         8.61        19.46 
TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0160 
       46.59        12.33        13.94        10.45         3.19        11.80 
TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 
        3.42        56.91        10.65        19.66         3.29        13.12 
TCGA-06-0173 TCGA-06-0174 TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 
        4.47         3.22        91.00         4.18        88.14        20.25 
TCGA-06-0182 TCGA-06-0184 TCGA-06-0187 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 
        3.65        69.90        27.22        15.42        10.42        38.96 
TCGA-06-0194 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 
        4.67         5.56         0.39         7.66         8.42         7.63 
TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0219 TCGA-06-0221 
        7.40        11.84         0.53        15.02         0.72        19.82 
TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 
       13.64        13.32        20.42        48.69        10.82         9.01 
TCGA-06-0402 TCGA-06-0409 TCGA-06-0412 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 
        0.26        72.36         9.57         5.75         5.75         9.80 
TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0745 TCGA-06-0747 
        2.10        23.57        14.20        26.40         7.86         2.70 
TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 
        2.70         0.92        43.46        46.19         5.65         7.17 
TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 
       40.41        16.57        20.78        26.76        23.93         6.84 
TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-1806 
       26.79        11.84        15.32        13.61        33.90        15.32 
TCGA-06-2557 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 
        1.08         4.93        17.65        12.56        30.64         5.95 
TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2570 TCGA-06-5410 TCGA-06-5411 
       16.64         5.98         4.37        31.50         3.55         8.35 
TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5416 TCGA-06-5856 TCGA-06-5858 
        4.54         8.81         8.98         6.71         3.75         6.15 
TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 
        5.23         7.79         5.39         1.48       120.56         7.36 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
        8.32        12.85         4.77         1.55         4.77         4.96 
TCGA-06-A5U0 TCGA-06-A5U1 TCGA-06-A6S1 TCGA-06-A7TK TCGA-06-A7TL TCGA-08-0244 
        4.70         1.87         2.56         5.39         5.42        22.68 
TCGA-08-0245 TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 
       37.84         4.18       115.86         1.74         8.42        25.71 
TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 
       12.16         9.80        29.23        65.33         1.28         8.42 
TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 
       17.95        24.56        31.10        37.58        22.29         3.39 
TCGA-08-0375 TCGA-08-0380 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 
       12.23        14.93        15.35        13.97         0.72        12.56 
TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 TCGA-08-0517 TCGA-08-0518 TCGA-08-0521 
        4.27        42.15        11.08        58.68        19.33         4.80 
TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 TCGA-12-0616 
        7.27        15.98        18.41         7.56        15.35        14.73 
TCGA-12-0620 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 
       10.45        94.78         0.10        38.17        25.97        26.66 
TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0775 
        3.65        20.38        28.41        15.06        53.85         7.63 
TCGA-12-0778 TCGA-12-0780 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 
       14.93        14.86        24.79        18.48        10.62        23.51 
TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1089 TCGA-12-1090 
       27.78        38.76         8.94        20.58         5.82         7.59 
TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1097 
       33.21        21.73        15.98        12.23        15.85        14.53 
TCGA-12-1099 TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 
        4.14        15.65        25.68        14.73         6.77        59.77 
TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 
       26.93        15.22        10.95        12.69        34.92        14.53 
TCGA-12-5295 TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 
       14.93         2.04        15.12        11.97         0.95         6.21 
TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 
       23.05         2.24        11.24         2.89        16.50        26.33 
TCGA-14-0871 TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 
       28.93        15.95        19.30         0.79         1.38         1.12 
TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1454 
        3.75        32.05        58.78        23.11         7.10        30.18 
TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1823 
       40.96         6.67        12.43         0.99         1.97        17.85 
TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-4157 
        7.63         5.88         7.17        17.49         7.96         3.42 
TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 TCGA-15-1447 TCGA-16-0846 TCGA-16-0848 
       13.78        50.53        19.10        53.19         3.91        17.59 
TCGA-16-0849 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 
       26.07         4.31        29.03         4.57        10.29        14.01 
TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 
        9.14        21.24        13.97         6.41        11.77        21.90 
TCGA-19-0960 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 
        8.61        14.27         3.39        10.75         9.07         5.95 
TCGA-19-1389 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 
        4.64         7.17        12.66         3.25         0.13         9.67 
TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 
        1.08         7.53         0.16         4.08        24.23         7.00 
TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 
        7.04         6.64        17.19         8.02        18.90         4.73 
TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 
       12.10         1.78        22.49        14.07        16.80        14.96 
TCGA-19-A60I TCGA-19-A6J4 TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 TCGA-26-1442 
       17.79         3.98        10.03        13.87         9.73        31.33 
TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 
        7.13         9.37         9.40        14.86         5.49         8.88 
TCGA-26-5139 TCGA-26-6173 TCGA-26-A7UX TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 
        1.58         7.92        19.33         5.06        16.60         9.86 
TCGA-27-1833 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-2518 TCGA-27-2519 
       24.23        21.30        30.05        14.04        24.76        10.39 
TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 
       10.39        16.08         7.59         2.86        14.40        15.78 
TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 
        0.20         2.53         9.21         8.48         1.22         1.55 
TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 TCGA-28-2513 TCGA-28-2514 
        2.83         0.13         0.66         6.74         7.30         5.26 
TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 
       11.28        17.88        14.53        11.77        31.27        23.44 
TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 
        5.16        22.68        12.76         5.42        15.39        21.07 
TCGA-32-1977 TCGA-32-1978 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 
        0.10        15.85         1.18         4.67        12.69        14.86 
TCGA-32-2491 TCGA-32-2494 TCGA-32-2616 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 
       12.23        20.78         7.36         8.84        22.78        25.18 
TCGA-32-4208 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 
       21.14         3.72        12.59        19.86        10.85        19.23 
TCGA-41-2571 TCGA-41-2572 TCGA-41-3392 TCGA-41-3393 TCGA-41-4097 TCGA-41-5651 
        0.85        13.35         0.99         4.44         0.20        15.12 
TCGA-41-6646 TCGA-4W-AA9S TCGA-4W-AA9T TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 
       12.46         4.14        14.76         3.45        20.91         4.34 
TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 
       14.33         8.22         7.50         4.80         4.54         3.09 
TCGA-76-4929 TCGA-76-4931 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6282 
        3.65         9.17        16.70         3.29         2.70        17.06 
TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 
        8.35        20.98         4.83         5.03         0.23         9.27 
TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 TCGA-OX-A56R 
        7.73         7.79         1.61        17.72        26.30         5.92 
TCGA-RR-A6KA TCGA-RR-A6KC TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 
        6.28        20.55         4.70         7.69        43.89        18.15 
TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-6186 
       10.62        64.64        40.18         0.10        21.01        17.69 
TCGA-CS-6188 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 
       23.84         8.48         7.56         8.02         7.40         6.61 
TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 
      122.73        81.96        75.25        47.93        72.92        50.86 
TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA 
       50.17        44.52        36.56        78.28        46.42        18.84 
TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH 
       30.21        46.72        39.78        33.57        72.95        31.63 
TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64S TCGA-DB-A64U 
       24.20        25.48        30.12         5.98        27.45        27.81 
TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O 
       29.23        14.40        12.10        11.24        17.88        30.74 
TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 
       16.18        19.96        31.82        14.40         8.02        30.21 
TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US 
       42.05        27.81        17.19        17.19        54.25        13.12 
TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 
       13.38         3.45        18.61        18.02        14.56        17.46 
TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 
        6.74        13.38         8.45         6.81       182.33        18.94 
TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 
       17.49        15.16       211.17        52.11        22.42        49.02 
TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 
       75.16        46.06        65.75         1.22        87.45         7.04 
TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 
       11.64       133.74        19.89        16.83        94.52       114.08 
TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 
        7.96         7.73        11.47        62.96       156.23       138.28 
TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7014 TCGA-DU-7015 TCGA-DU-7018 
      105.21         6.54         8.84       117.40        90.77        30.67 
TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7299 TCGA-DU-7300 
       26.30        10.36         7.96        94.32        44.02        62.01 
TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8162 
       25.91        60.30        23.31        41.98         2.76        14.60 
TCGA-DU-8163 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS 
       20.68        16.96        15.48        14.24        12.59        15.12 
TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 
        3.65         5.65        12.20         8.65         2.70        77.98 
TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76R TCGA-DU-A7T6 
        7.23         5.98        11.41        26.76        21.30        17.98 
TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG 
      124.50        77.88        42.31        23.51         7.50        44.42 
TCGA-DU-A7TJ TCGA-E1-5303 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 
        0.56        67.46        79.99        57.93       134.27        78.21 
TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YO TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7Z6 
       95.57       130.78        75.02        32.45        36.82        32.35 
TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 
       14.33         0.23         0.20        47.77        25.48        34.36 
TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 
       36.82        18.77        14.93        24.99        23.97        18.44 
TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 
       15.35        17.88        22.55        20.61        20.09        12.95 
TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 
       13.68        14.24        16.01        20.09        14.96        22.52 
TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A60J 
       32.61        38.27        10.72        18.38        18.71        14.76 
TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 
       16.41        15.02        16.44        28.54        10.78        36.66 
TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7469 
       48.69        20.45         5.72        27.52         0.10        11.54 
TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 
       40.11         0.13         0.03        16.54         3.75        17.42 
TCGA-HT-7476 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7485 
        6.54        40.34        75.19        95.93       106.95         4.01 
TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 
       29.85        23.18       122.47         4.57        17.29         3.16 
TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 
       22.06        45.99        56.09        57.60         0.23        14.27 
TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7687 
        0.16        16.24         0.76        44.68         6.05         0.10 
TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 
       31.69        14.96         0.10         0.10         2.96        17.52 
TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 
        6.90        14.53        39.48        19.23        39.09         0.23 
TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 
       50.63         0.49        37.15         0.33         0.13         3.68 
TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 
        5.33        35.47         3.72        11.28        31.43         1.64 
TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 
       16.24         9.40        63.55         0.10        37.87        33.01 
TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 
       12.23         6.25         0.10         0.46         2.50         5.56 
TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8563 TCGA-HT-8564 
       13.78         0.23        29.59        34.19        28.27        15.72 
TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA 
        0.23        26.04         0.13        20.22         0.07        27.35 
TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A618 TCGA-HT-A619 
        5.33         2.70        16.93         1.81        16.83        21.40 
TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 
       17.65         2.43        15.35        11.05         0.10        29.92 
TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7493 TCGA-HW-7495 
       19.89         8.32        19.23        40.18        35.90         4.31 
TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL 
       21.60        19.59        17.82        20.35        12.76        20.81 
TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV 
       20.71        19.00        42.77        14.40        14.40         0.23 
TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 
        6.71         1.64         2.37         2.30         4.11         5.88 
TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X 
        7.63         0.76         1.28         0.16        10.42        13.25 
TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-QH-A65R TCGA-QH-A65S 
       11.64         0.20         9.01        13.61        15.16         2.53 
TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV 
       12.62        15.85        14.04        19.33        14.83        14.53 
TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 
       13.61        12.23         2.20         9.17        10.29        14.53 
TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X 
       16.34        16.73         1.91        16.50         5.03        11.08 
TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X 
       12.99        88.83        94.03        32.65        59.38        30.87 
TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 
        5.46         9.90        28.08         2.07        19.59        30.67 
TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ 
       62.17        87.12        18.77        34.49        31.33        28.70 
TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 
       22.95        17.62        23.64        32.61        16.08        98.24 
TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG 
       95.93         5.85       106.39        69.50        72.59        80.12 
TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ 
       84.99        31.10        15.91        18.61        15.16        14.07 
TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 
       36.13         7.92        22.32        23.51         7.13        20.02 
TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ 
        8.19         2.04        17.03        13.12        28.37        13.02 
TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 
      169.84        10.39        99.06        30.05        98.63        31.59 
TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA 
       18.71        11.97        49.45        48.33        49.32        34.78 
TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84G TCGA-TM-A84I TCGA-TM-A84J 
       48.39        24.92        16.18        40.64        28.08        24.16 
TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S 
       40.83        24.79        33.24        25.38        18.61        14.93 
TCGA-TQ-A7RH TCGA-TQ-A7RW TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB 
       15.98        26.99        43.04        30.08        13.51         0.10 
TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS 
        7.89        35.93        23.47        37.05        16.01        23.21 
TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A 
        8.05        51.06        13.32        43.96        39.88        43.40 
TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D 
       45.80        46.88        37.71 

  AMP PEAK 17(9Q34.3) MUTATED AMP PEAK 17(9Q34.3) WILD-TYPE 
                         0.10                          0.03 
  AMP PEAK 17(9Q34.3) MUTATED AMP PEAK 17(9Q34.3) WILD-TYPE 
                       172.77                        211.17 
  AMP PEAK 17(9Q34.3) MUTATED AMP PEAK 17(9Q34.3) WILD-TYPE 
                       13.135                        14.930 
[1] "0.1 - 172.8 (13.1)" "0.0 - 211.2 (14.9)"
[1] "hr=" "1.3"
D17V2, continuous
D17V3, binary
                               cls
clus                              0   1
  AMP PEAK 17(9Q34.3) MUTATED    93  43
  AMP PEAK 17(9Q34.3) WILD-TYPE 477 429
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 17(9Q34.3) MUTATED     93   43
  AMP PEAK 17(9Q34.3) WILD-TYPE  477  429
                        clus
vv                       AMP PEAK 17(9Q34.3) MUTATED
  BRAIN                                           93
  CENTRAL NERVOUS SYSTEM                          43
                        clus
vv                       AMP PEAK 17(9Q34.3) WILD-TYPE
  BRAIN                                            477
  CENTRAL NERVOUS SYSTEM                           429
[1] 2 2
[1] FALSE
D17V4, binary
                               cls
clus                              0   1
  AMP PEAK 17(9Q34.3) MUTATED    66  70
  AMP PEAK 17(9Q34.3) WILD-TYPE 364 542
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 17(9Q34.3) MUTATED     66   70
  AMP PEAK 17(9Q34.3) WILD-TYPE  364  542
        clus
vv       AMP PEAK 17(9Q34.3) MUTATED AMP PEAK 17(9Q34.3) WILD-TYPE
  FEMALE                          66                           364
  MALE                            70                           542
[1] 2 2
[1] FALSE
D17V5, continuous
                               vv
clus                            ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  AMP PEAK 17(9Q34.3) MUTATED            23                             3
  AMP PEAK 17(9Q34.3) WILD-TYPE         153                            24
                               vv
clus                            OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  AMP PEAK 17(9Q34.3) MUTATED                 11                 9
  AMP PEAK 17(9Q34.3) WILD-TYPE              107               169
                               vv
clus                            TREATED PRIMARY GBM
  AMP PEAK 17(9Q34.3) MUTATED                     2
  AMP PEAK 17(9Q34.3) WILD-TYPE                  16
                               vv
clus                            UNTREATED PRIMARY (DE NOVO) GBM
  AMP PEAK 17(9Q34.3) MUTATED                                88
  AMP PEAK 17(9Q34.3) WILD-TYPE                             437
D17V6, multiclass
                                 clus
vv                                AMP PEAK 17(9Q34.3) MUTATED
  ASTROCYTOMA                                              23
  GLIOBLASTOMA MULTIFORME (GBM)                             3
  OLIGOASTROCYTOMA                                         11
  OLIGODENDROGLIOMA                                         9
  TREATED PRIMARY GBM                                       2
  UNTREATED PRIMARY (DE NOVO) GBM                          88
                                 clus
vv                                AMP PEAK 17(9Q34.3) WILD-TYPE
  ASTROCYTOMA                                               153
  GLIOBLASTOMA MULTIFORME (GBM)                              24
  OLIGOASTROCYTOMA                                          107
  OLIGODENDROGLIOMA                                         169
  TREATED PRIMARY GBM                                        16
  UNTREATED PRIMARY (DE NOVO) GBM                           437
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D17V7, binary
                               cls
clus                              0   1
  AMP PEAK 17(9Q34.3) MUTATED    72  64
  AMP PEAK 17(9Q34.3) WILD-TYPE 402 504
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 17(9Q34.3) MUTATED     72   64
  AMP PEAK 17(9Q34.3) WILD-TYPE  402  504
     clus
vv    AMP PEAK 17(9Q34.3) MUTATED AMP PEAK 17(9Q34.3) WILD-TYPE
  NO                           72                           402
  YES                          64                           504
[1] 2 2
[1] FALSE
                               vv
clus                            AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK 17(9Q34.3) MUTATED                                  1     3
  AMP PEAK 17(9Q34.3) WILD-TYPE                                0    18
                               vv
clus                            BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 17(9Q34.3) MUTATED                           7   122
  AMP PEAK 17(9Q34.3) WILD-TYPE                        57   800
D17V8, multiclass
                                  clus
vv                                 AMP PEAK 17(9Q34.3) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                           1
  ASIAN                                                      3
  BLACK OR AFRICAN AMERICAN                                  7
  WHITE                                                    122
                                  clus
vv                                 AMP PEAK 17(9Q34.3) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                             0
  ASIAN                                                       18
  BLACK OR AFRICAN AMERICAN                                   57
  WHITE                                                      800
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D17V9, binary
                               cls
clus                              0   1
  AMP PEAK 17(9Q34.3) MUTATED     4 115
  AMP PEAK 17(9Q34.3) WILD-TYPE  26 776
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 17(9Q34.3) MUTATED      4  115
  AMP PEAK 17(9Q34.3) WILD-TYPE   26  776
                        clus
vv                       AMP PEAK 17(9Q34.3) MUTATED
  HISPANIC OR LATINO                               4
  NOT HISPANIC OR LATINO                         115
                        clus
vv                       AMP PEAK 17(9Q34.3) WILD-TYPE
  HISPANIC OR LATINO                                26
  NOT HISPANIC OR LATINO                           776
[1] 2 2
[1] FALSE

Clustering(18) Variable = AMP PEAK 18(10P15.1) MUTATION ANALYSIS
D18V1, survival
                                sevent
clus2                              0   1
  AMP PEAK 18(10P15.1) MUTATED    59  25
  AMP PEAK 18(10P15.1) WILD-TYPE 421 534
  AMP PEAK 18(10P15.1) MUTATED AMP PEAK 18(10P15.1) WILD-TYPE 
                            84                            955 
  AMP PEAK 18(10P15.1) MUTATED AMP PEAK 18(10P15.1) WILD-TYPE 
                            25                            534 
$`AMP PEAK 18(10P15.1) MUTATED`
TCGA-02-0011 TCGA-02-0014 TCGA-02-0069 TCGA-02-0080 TCGA-02-0087 TCGA-02-0114 
       20.71        82.59        28.70        89.72        57.76        99.98 
TCGA-06-0402 TCGA-06-2569 TCGA-06-6389 TCGA-06-A7TL TCGA-08-0350 TCGA-08-0351 
        0.26         0.43         7.79         5.42        29.23        65.33 
TCGA-08-0517 TCGA-12-0818 TCGA-14-1827 TCGA-14-3477 TCGA-27-2521 TCGA-32-1976 
       58.68        91.76         5.88         3.78        10.39         0.49 
TCGA-32-2632 TCGA-CS-4943 TCGA-CS-5393 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 
        8.84        18.15        40.18        12.43         8.48         7.56 
TCGA-DB-5270 TCGA-DB-A4XE TCGA-DB-A75M TCGA-DH-A66B TCGA-DH-A7UU TCGA-DH-A7UV 
      122.73        37.45        17.88        42.05         3.45        18.61 
TCGA-DU-5871 TCGA-DU-6396 TCGA-DU-6408 TCGA-DU-7014 TCGA-DU-7019 TCGA-DU-7292 
       18.94        75.16       114.08       117.40        26.30         7.96 
TCGA-DU-7299 TCGA-DU-7304 TCGA-DU-A5TR TCGA-DU-A5TS TCGA-E1-5303 TCGA-E1-5304 
       44.02        23.31        12.59        15.12        67.46        41.13 
TCGA-E1-5322 TCGA-E1-A7YW TCGA-FG-6691 TCGA-FG-8185 TCGA-FG-A4MY TCGA-FG-A60L 
      130.78        36.82        23.97        14.24        23.70        16.41 
TCGA-FG-A70Y TCGA-HT-7470 TCGA-HT-7473 TCGA-HT-7476 TCGA-HT-7479 TCGA-HT-7482 
       28.54        40.11        16.54         6.54        40.34       106.95 
TCGA-HT-7483 TCGA-HT-7688 TCGA-HT-7873 TCGA-HT-7879 TCGA-HT-8106 TCGA-HT-8111 
      172.77        31.69        23.61         3.68         0.10         0.23 
TCGA-HT-8114 TCGA-HT-A74O TCGA-HW-7489 TCGA-HW-7493 TCGA-HW-8321 TCGA-IK-7675 
       34.19         0.10         8.32        35.90        19.59        19.00 
TCGA-P5-A5EZ TCGA-P5-A5F1 TCGA-P5-A72X TCGA-QH-A6XA TCGA-RY-A845 TCGA-S9-A6U0 
        2.30         5.88        13.25        16.50        19.59        22.95 
TCGA-S9-A7IS TCGA-S9-A7J0 TCGA-S9-A89Z TCGA-TM-A7CA TCGA-TM-A84H TCGA-TQ-A7RH 
        7.92        20.02        11.97        34.78        30.44        15.98 
TCGA-VM-A8C8 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85E 
       43.04        13.32        43.96        39.88        43.40        20.81 

$`AMP PEAK 18(10P15.1) WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
       11.77         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 TCGA-02-0025 
       20.61        87.06        77.65        20.12        53.10        42.74 
TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 
       24.59        12.16        90.58         2.83        14.14         3.62 
TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 
       10.72        10.52        18.31         6.87        14.73         3.22 
TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 TCGA-02-0058 
       15.09        12.59         6.54         2.50        19.86         8.35 
TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0070 TCGA-02-0071 
        9.57         6.02        19.73        26.43        25.05         5.49 
TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 
       10.19        20.84        27.25        22.72        12.62        51.32 
TCGA-02-0086 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 
        8.81        16.96         3.48        27.02        65.00        11.67 
TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 
       17.65        23.18        92.65        15.65        48.95        16.54 
TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 
       16.93        17.72        10.75        14.47         3.98        13.87 
TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 
       14.20        15.95        12.23         9.90         7.73        10.62 
TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 
        7.33        15.91        25.71         4.37        25.12        10.59 
TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 
       12.39        14.50        10.55        47.11        11.34         9.27 
TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 
       16.21         3.35        16.80        12.92        15.32        15.45 
TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 
       20.32         2.70         6.15        20.38        47.61         6.94 
TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 
        3.98        22.72        33.67        12.95        25.35        14.30 
TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 
       26.70        24.23        11.90         0.20        10.29         2.20 
TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 
       11.74         2.33        20.09        17.79        10.09         8.61 
TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 
       19.46        46.59        12.33        13.94        10.45         3.19 
TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 
       10.82         9.44        11.80         3.42        56.91        10.65 
TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 
        5.85        19.66         3.29        13.12         4.47         3.22 
TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 
        4.04        91.00         4.18        88.14        20.25         3.65 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 
       69.90        73.84        27.22        44.58        15.42        10.42 
TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 
       38.96         4.67         7.40         5.56         0.39         7.66 
TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 
        8.42         7.63         7.40        11.84         0.53        15.02 
TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 
       24.16         0.72        19.82        13.64        13.32        20.42 
TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0409 TCGA-06-0410 TCGA-06-0412 
       48.69        10.82         9.01        72.36         4.70         9.57 
TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 
        3.16        35.11        12.62         5.75         5.75         9.80 
TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 
        2.10        23.57        14.20        26.40        46.88         7.86 
TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 
        2.70         2.70         0.92        43.46        46.19         5.65 
TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 
        7.17        40.41        16.57        20.78        26.76        23.93 
TCGA-06-1086 TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 
        6.84         4.04        26.79        11.84        15.32        13.61 
TCGA-06-1805 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       33.90        15.32         1.08        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 
       12.56        30.64         5.95        16.64         5.98         4.37 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       31.50        11.74         3.55         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         6.71         2.73         3.75         6.15 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 
        4.57         5.23         5.39         1.48       120.56         7.36 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
        8.32        12.85         4.77         1.55         4.77         4.96 
TCGA-06-A5U0 TCGA-06-A5U1 TCGA-06-A6S0 TCGA-06-A6S1 TCGA-06-A7TK TCGA-08-0244 
        4.70         1.87         3.12         2.56         5.39        22.68 
TCGA-08-0245 TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 
       37.84         4.18       115.86         1.74         8.42        25.71 
TCGA-08-0348 TCGA-08-0349 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 
       12.16         9.80         1.28         8.42        17.95        24.56 
TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 
       31.10        37.58        22.29         3.39        12.23        14.93 
TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 
       18.02        15.35        13.97         0.72        12.56         4.27 
TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 
       42.15        11.08        19.59        19.33        10.75         4.80 
TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 TCGA-12-0616 
        7.27        15.98        18.41         7.56        15.35        14.73 
TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 
       12.99        34.92        10.45         7.59        94.78         0.10 
TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 
       38.17        25.97        26.66        12.13         3.65        20.38 
TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 
       28.41        15.06        53.85        43.23         7.63         9.73 
TCGA-12-0778 TCGA-12-0780 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 
       14.93        14.86        24.79        18.48        10.62        23.51 
TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 
       27.78        38.76         8.94        20.58       127.59         5.82 
TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 
        7.59        33.21        21.73        15.98        12.23        15.85 
TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 TCGA-12-1598 TCGA-12-1599 
        9.11        14.53         3.98         4.14        15.65        25.68 
TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 
       14.73         6.77        59.77        44.02        26.93        15.22 
TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 
       10.95        12.69        34.92        14.53        14.93         3.22 
TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 
        2.04        15.12        11.97         0.95         6.21        23.05 
TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 
        2.24        11.24        13.78         3.25         1.35         5.39 
TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 TCGA-14-0867 TCGA-14-0871 TCGA-14-1034 
        2.89        16.50        26.33         2.04        28.93        15.95 
TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 
       19.30         0.79         1.38         1.12         3.75        32.05 
TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 
       58.78        23.11         7.10         1.15        30.18         0.92 
TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 
       40.96         6.67        12.43         0.99         1.97        17.79 
TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-4157 
       17.85         7.63         7.17        17.49         7.96         3.42 
TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 TCGA-15-1447 TCGA-15-1449 TCGA-16-0846 
       13.78        50.53        19.10        53.19        13.28         3.91 
TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 
       17.59        26.07        16.37         4.31        29.03         4.57 
TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 
       10.29        14.01         9.14        21.24        13.97         6.41 
TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 
       11.77        21.90         8.61         0.66        14.27         3.39 
TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 TCGA-19-1390 
       10.75         9.07         5.95        12.95         4.64        25.38 
TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 
        3.65         7.17        12.66         3.25         0.13         9.67 
TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 
        4.87         1.08         7.53         0.16         4.08        24.23 
TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 
        7.00         7.04         6.64        17.19         8.02        18.90 
TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 
        4.73        12.10         1.78        22.49        14.07        16.80 
TCGA-19-5960 TCGA-19-A60I TCGA-19-A6J4 TCGA-19-A6J5 TCGA-26-1438 TCGA-26-1439 
       14.96        17.79         3.98        28.54        10.03        13.87 
TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 
        9.73        31.33         7.13         9.37         9.40        14.86 
TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 
        5.49         8.88        18.97         1.58         7.92         2.33 
TCGA-26-A7UX TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 
       19.33         5.06        16.60         9.86        24.23        40.54 
TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 
       21.30        30.05        14.04        11.51        24.76        10.39 
TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 
       16.08         7.59         2.86        14.40        15.78         0.20 
TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 
        2.53         9.21         8.35         7.63         8.48         1.22 
TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 
        1.55         2.83         0.13         0.66         6.74         4.77 
TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 
        7.30         5.26        14.93        11.28        17.88        14.53 
TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 
       11.77        31.27        23.44        11.01        13.64         5.16 
TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 TCGA-32-1977 
       22.68        12.76         5.42        15.39        21.07         0.10 
TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 
       15.85        19.50         1.18         4.67        12.69        14.86 
TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2616 
       16.93        12.23        20.78        15.02        15.95         7.36 
TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 
       22.78        25.18        21.14         3.72        12.59        19.86 
TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 
       10.85        19.23         0.85        13.35         8.94         9.53 
TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 
        0.99         4.44        11.84         0.20        15.12        12.46 
TCGA-4W-AA9S TCGA-4W-AA9T TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 
        4.14        14.76         3.45        20.91         4.34        14.33 
TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 
        8.22         7.50         4.80         4.54         3.09         3.65 
TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 
        9.17         2.53        10.78        16.70         3.29         2.70 
TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 
       11.38        17.06         8.35        20.98         4.83         5.03 
TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 
        0.23         9.27         7.73         7.79         1.61        17.72 
TCGA-87-5896 TCGA-OX-A56R TCGA-RR-A6KA TCGA-RR-A6KC TCGA-CS-4938 TCGA-CS-4941 
       26.30         5.92         6.28        20.55         4.70         7.69 
TCGA-CS-4942 TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 
       43.89        10.62        64.64         0.10        21.01         9.96 
TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6668 TCGA-CS-6669 
        6.38        17.69        23.84        17.95         8.02         7.40 
TCGA-CS-6670 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 
        6.61        81.96        75.25        47.93        72.92        50.86 
TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA 
       50.17        44.52        36.56        78.28        46.42        18.84 
TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH 
       30.21        46.72        39.78        33.57        72.95        31.63 
TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S 
       24.20        25.48        30.12         5.98        31.40        27.45 
TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L 
       27.81        29.23        14.40        18.51        12.10        11.24 
TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 
       30.74        16.18        19.96        31.82        30.31        14.40 
TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR 
        8.02        30.21        27.81        17.19        17.19        54.25 
TCGA-DH-A7US TCGA-DH-A7UT TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 
       13.12        13.38        18.02        14.56        17.46         6.74 
TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5872 TCGA-DU-5874 
       13.38         8.45         6.81       182.33        17.49        15.16 
TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6397 TCGA-DU-6399 
      211.17        52.11        22.42        49.02        46.06        65.75 
TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 
        1.22        87.45         7.04        11.64       133.74        19.89 
TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 
       16.83        94.52         7.96         7.73        11.47        62.96 
TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 
      156.23       138.28        14.99       105.21         6.54         8.84 
TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7290 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7300 
       90.77        30.67        10.36        94.32        18.94        62.01 
TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 
       25.91        60.30        41.98         2.76         5.10        23.74 
TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 
       14.60        20.68        21.40        19.13        16.96        15.48 
TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY 
       14.17        14.24         4.96         3.65         5.65        12.20 
TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K 
        8.65         2.70        77.98         7.23         5.98        11.41 
TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA 
       26.76         7.13        21.30        17.98       124.50        77.88 
TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 
       42.31        23.51         7.50        44.42         0.56        50.14 
TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-A7YO 
       79.99        57.93       134.27        78.21        95.57        75.02 
TCGA-E1-A7YV TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 
       32.45        32.35        14.33         0.23         0.20        47.77 
TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 
       25.48        34.36        36.82        18.77        14.93        24.99 
TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 
       18.44        15.35        17.88        22.55        20.61        20.09 
TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 
       12.95        13.68        16.01        20.09        14.96        22.52 
TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A60J 
       32.61        38.27        10.72        18.38        18.71        14.76 
TCGA-FG-A60K TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Z TCGA-FG-A710 
       17.82        15.02        16.44        22.26        10.78        36.66 
TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 
       48.69        20.45        13.58         5.72        27.52         0.10 
TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7474 TCGA-HT-7475 
        6.67        11.54         0.13         0.03         3.75        17.42 
TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7485 TCGA-HT-7601 
       24.26         6.38        75.19        95.93         4.01         5.03 
TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 
       29.85        23.18       122.47         4.57        17.29         3.16 
TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 
       22.06        45.99        56.09        57.60         0.23        14.27 
TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 
        0.16        16.24         0.76        44.68         6.05        42.74 
TCGA-HT-7687 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 
        0.10        14.96         0.10         0.10         2.96        17.52 
TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 
        6.90        14.53        39.48        19.23        39.09         0.23 
TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7880 
       50.63         0.49        37.15         0.33         0.13         5.33 
TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 
       35.47         3.72        11.28        31.43         1.64        16.24 
TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 
        9.40        63.55         0.10        37.87        33.01        12.23 
TCGA-HT-8105 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8113 
        6.25         0.46         2.50         5.56        13.78        29.59 
TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 
       28.27        15.72         0.23        26.04         0.13        20.22 
TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 
        0.07        27.35         0.10         5.33         2.70        16.93 
TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61B TCGA-HT-A61C 
        1.81        16.14        16.83        21.40        17.52        17.65 
TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HW-7486 TCGA-HW-7487 
        2.43        10.52        15.35        11.05        29.92        19.89 
TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8322 
       19.23        40.18         4.31        21.70        21.60        17.82 
TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-8125 TCGA-KT-A74X 
       20.35        12.76        20.81        20.71        42.77        14.40 
TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5F0 
       14.40         0.23         6.71         1.64         2.37         4.11 
TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72Z 
        7.63         0.76         1.28         0.16        10.42        11.64 
TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V 
        0.20         9.01        13.61        15.16         2.53        12.62 
TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW 
       15.85        14.04        19.33        14.83        14.53        13.61 
TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 
       12.23         2.20         9.17        10.29        14.53        16.34 
TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK 
       16.73         1.91         5.03        11.08        12.99        88.83 
TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z 
       94.03        32.65        59.38        30.87         5.46         9.90 
TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV 
       28.08         2.07        30.67        62.17        87.12        18.77 
TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U1 TCGA-S9-A6U2 
       37.84        34.49        31.33        28.70        17.62        23.64 
TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB 
       32.61        16.08        98.24        95.93         5.85       106.39 
TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL 
       69.50        72.59        80.12        32.45        84.99        31.10 
TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ 
       19.86        15.91        18.61        15.16        14.07        36.13 
TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 
       22.32        23.51         7.13         8.19         2.04        17.03 
TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 
       15.06        13.12        28.37        13.02       169.84        10.39 
TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-TM-A7C3 
       99.06        30.05        98.63        31.59        18.71        49.45 
TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F 
       48.33        49.32        48.39        24.92        16.18        59.05 
TCGA-TM-A84G TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O 
       40.64        28.08        24.16        40.83        24.79        33.24 
TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RW TCGA-VM-A8C9 
       25.38        18.61        14.93        23.80        26.99        30.08 
TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CH TCGA-VV-A829 
       13.51         0.10         7.89        35.93        23.47        37.05 
TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WY-A85B TCGA-WY-A85C 
       16.01        23.21         8.05        51.06        45.80        46.88 
TCGA-WY-A85D 
       37.71 

  AMP PEAK 18(10P15.1) MUTATED AMP PEAK 18(10P15.1) WILD-TYPE 
                          0.10                           0.03 
  AMP PEAK 18(10P15.1) MUTATED AMP PEAK 18(10P15.1) WILD-TYPE 
                        172.77                         211.17 
  AMP PEAK 18(10P15.1) MUTATED AMP PEAK 18(10P15.1) WILD-TYPE 
                         20.76                          14.47 
[1] "0.1 - 172.8 (20.8)" "0.0 - 211.2 (14.5)"
[1] "hr=" "2.8"
D18V2, continuous
D18V3, binary
                                cls
clus                               0   1
  AMP PEAK 18(10P15.1) MUTATED    19  65
  AMP PEAK 18(10P15.1) WILD-TYPE 551 407
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 18(10P15.1) MUTATED     19   65
  AMP PEAK 18(10P15.1) WILD-TYPE  551  407
                        clus
vv                       AMP PEAK 18(10P15.1) MUTATED
  BRAIN                                            19
  CENTRAL NERVOUS SYSTEM                           65
                        clus
vv                       AMP PEAK 18(10P15.1) WILD-TYPE
  BRAIN                                             551
  CENTRAL NERVOUS SYSTEM                            407
[1] 2 2
[1] FALSE
D18V4, binary
                                cls
clus                               0   1
  AMP PEAK 18(10P15.1) MUTATED    33  51
  AMP PEAK 18(10P15.1) WILD-TYPE 397 561
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 18(10P15.1) MUTATED     33   51
  AMP PEAK 18(10P15.1) WILD-TYPE  397  561
        clus
vv       AMP PEAK 18(10P15.1) MUTATED AMP PEAK 18(10P15.1) WILD-TYPE
  FEMALE                           33                            397
  MALE                             51                            561
[1] 2 2
[1] FALSE
D18V5, continuous
                                vv
clus                             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  AMP PEAK 18(10P15.1) MUTATED            33                             1
  AMP PEAK 18(10P15.1) WILD-TYPE         143                            26
                                vv
clus                             OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  AMP PEAK 18(10P15.1) MUTATED                 23                 9
  AMP PEAK 18(10P15.1) WILD-TYPE               95               169
                                vv
clus                             TREATED PRIMARY GBM
  AMP PEAK 18(10P15.1) MUTATED                     1
  AMP PEAK 18(10P15.1) WILD-TYPE                  17
                                vv
clus                             UNTREATED PRIMARY (DE NOVO) GBM
  AMP PEAK 18(10P15.1) MUTATED                                17
  AMP PEAK 18(10P15.1) WILD-TYPE                             508
D18V6, multiclass
                                 clus
vv                                AMP PEAK 18(10P15.1) MUTATED
  ASTROCYTOMA                                               33
  GLIOBLASTOMA MULTIFORME (GBM)                              1
  OLIGOASTROCYTOMA                                          23
  OLIGODENDROGLIOMA                                          9
  TREATED PRIMARY GBM                                        1
  UNTREATED PRIMARY (DE NOVO) GBM                           17
                                 clus
vv                                AMP PEAK 18(10P15.1) WILD-TYPE
  ASTROCYTOMA                                                143
  GLIOBLASTOMA MULTIFORME (GBM)                               26
  OLIGOASTROCYTOMA                                            95
  OLIGODENDROGLIOMA                                          169
  TREATED PRIMARY GBM                                         17
  UNTREATED PRIMARY (DE NOVO) GBM                            508
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D18V7, binary
                                cls
clus                               0   1
  AMP PEAK 18(10P15.1) MUTATED    29  55
  AMP PEAK 18(10P15.1) WILD-TYPE 445 513
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 18(10P15.1) MUTATED     29   55
  AMP PEAK 18(10P15.1) WILD-TYPE  445  513
     clus
vv    AMP PEAK 18(10P15.1) MUTATED AMP PEAK 18(10P15.1) WILD-TYPE
  NO                            29                            445
  YES                           55                            513
[1] 2 2
[1] FALSE
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK 18(10P15.1) MUTATED                                  0     1
  AMP PEAK 18(10P15.1) WILD-TYPE                                1    20
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 18(10P15.1) MUTATED                           5    77
  AMP PEAK 18(10P15.1) WILD-TYPE                        59   845
D18V8, multiclass
                                  clus
vv                                 AMP PEAK 18(10P15.1) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            0
  ASIAN                                                       1
  BLACK OR AFRICAN AMERICAN                                   5
  WHITE                                                      77
                                  clus
vv                                 AMP PEAK 18(10P15.1) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              1
  ASIAN                                                        20
  BLACK OR AFRICAN AMERICAN                                    59
  WHITE                                                       845
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D18V9, binary
                                cls
clus                               0   1
  AMP PEAK 18(10P15.1) MUTATED     6  70
  AMP PEAK 18(10P15.1) WILD-TYPE  24 821
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 18(10P15.1) MUTATED      6   70
  AMP PEAK 18(10P15.1) WILD-TYPE   24  821
                        clus
vv                       AMP PEAK 18(10P15.1) MUTATED
  HISPANIC OR LATINO                                6
  NOT HISPANIC OR LATINO                           70
                        clus
vv                       AMP PEAK 18(10P15.1) WILD-TYPE
  HISPANIC OR LATINO                                 24
  NOT HISPANIC OR LATINO                            821
[1] 2 2
[1] FALSE

Clustering(19) Variable = AMP PEAK 19(11P13) MUTATION ANALYSIS
D19V1, survival
                              sevent
clus2                            0   1
  AMP PEAK 19(11P13) MUTATED    27  31
  AMP PEAK 19(11P13) WILD-TYPE 453 528
  AMP PEAK 19(11P13) MUTATED AMP PEAK 19(11P13) WILD-TYPE 
                          58                          981 
  AMP PEAK 19(11P13) MUTATED AMP PEAK 19(11P13) WILD-TYPE 
                          31                          528 
$`AMP PEAK 19(11P13) MUTATED`
TCGA-02-0025 TCGA-02-0037 TCGA-02-0054 TCGA-02-0099 TCGA-02-0106 TCGA-02-0115 
       42.74         3.62         6.54         3.48        11.67        15.65 
TCGA-02-0258 TCGA-02-0290 TCGA-06-0130 TCGA-06-0160 TCGA-06-0221 TCGA-06-0743 
       16.54        15.95        12.95        11.80        19.82        26.40 
TCGA-06-1087 TCGA-06-2557 TCGA-08-0386 TCGA-08-0517 TCGA-12-0616 TCGA-12-0670 
        4.04         1.08        18.02        58.68        14.73        25.97 
TCGA-12-0826 TCGA-12-1093 TCGA-12-1598 TCGA-14-0871 TCGA-19-1388 TCGA-19-4065 
       27.78        15.98        15.65        28.93        12.95         7.04 
TCGA-19-5958 TCGA-19-A60I TCGA-27-1838 TCGA-27-2521 TCGA-27-2526 TCGA-28-5207 
       14.07        17.79        11.51        10.39         2.86        11.28 
TCGA-CS-5396 TCGA-CS-6666 TCGA-DB-A4X9 TCGA-DB-A64L TCGA-DH-5144 TCGA-DU-6392 
        9.96         8.48        46.42        24.20         8.02       211.17 
TCGA-DU-6393 TCGA-DU-6400 TCGA-DU-7018 TCGA-DU-8168 TCGA-DU-A5TW TCGA-DU-A6S7 
       52.11         1.22        30.67        14.17         5.65         7.23 
TCGA-DU-A6S8 TCGA-FG-5962 TCGA-FG-7634 TCGA-HT-7684 TCGA-HT-8109 TCGA-HT-A74K 
        5.98        47.77        15.35         6.05         5.56        15.35 
TCGA-HW-A5KM TCGA-QH-A65X TCGA-QH-A6CZ TCGA-RY-A845 TCGA-S9-A6TW TCGA-S9-A6TY 
       20.71        15.85         9.17        19.59        37.84        31.33 
TCGA-S9-A6WH TCGA-S9-A7QY TCGA-TQ-A7RW TCGA-VM-A8CA 
       32.45        28.37        26.99        13.51 

$`AMP PEAK 19(11P13) WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
       11.77         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 
       20.71        82.59        20.61        87.06        77.65        20.12 
TCGA-02-0024 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 
       53.10        24.59        12.16        90.58         2.83        14.14 
TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 
       10.72        10.52        18.31         6.87        14.73         3.22 
TCGA-02-0051 TCGA-02-0052 TCGA-02-0055 TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 
       15.09        12.59         2.50        19.86         8.35         9.57 
TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 
        6.02        19.73        26.43        28.70        25.05         5.49 
TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 
       10.19        20.84        27.25        89.72        22.72        12.62 
TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0102 TCGA-02-0104 
       51.32         8.81        57.76        16.96        27.02        65.00 
TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 TCGA-02-0114 TCGA-02-0116 TCGA-02-0260 
       17.65        23.18        92.65        99.98        48.95        16.93 
TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 
       17.72        10.75        14.47         3.98        13.87        14.20 
TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 
       12.23         9.90         7.73        10.62         7.33        15.91 
TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 
       25.71         4.37        25.12        10.59        12.39        14.50 
TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 
       10.55        47.11        11.34         9.27        16.21         3.35 
TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 
       16.80        12.92        15.32        15.45        20.32         2.70 
TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 
        6.15        20.38        47.61         6.94         3.98        22.72 
TCGA-06-0129 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 
       33.67        25.35        14.30        26.70        24.23        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 
        0.20        10.29         2.20        11.74         2.33        20.09 
TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 
       17.79        10.09         8.61        19.46        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0162 
       13.94        10.45         3.19        10.82         9.44         3.42 
TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 
       56.91        10.65         5.85        19.66         3.29        13.12 
TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 
        4.47         3.22         4.04        91.00         4.18        88.14 
TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 
       20.25         3.65        69.90        73.84        27.22        44.58 
TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 
       15.42        10.42        38.96         4.67         7.40         5.56 
TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 
        0.39         7.66         8.42         7.63         7.40        11.84 
TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 TCGA-06-0238 
        0.53        15.02        24.16         0.72        13.64        13.32 
TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 
       20.42        48.69        10.82         9.01         0.26        72.36 
TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 
        4.70         9.57         3.16        35.11        12.62         5.75 
TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0744 
        5.75         9.80         2.10        23.57        14.20        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1084 TCGA-06-1086 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 
       23.93         6.84        26.79        11.84        15.32        13.61 
TCGA-06-1805 TCGA-06-1806 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 
       33.90        15.32        12.49         4.93        17.65        12.56 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 
       30.64         5.95        16.64         5.98         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       31.50        11.74         3.55         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         6.71         2.73         3.75         6.15 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.57         5.23         7.79         5.39         1.48       120.56 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.32        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-06-A5U0 TCGA-06-A5U1 TCGA-06-A6S0 TCGA-06-A6S1 TCGA-06-A7TK 
        4.96         4.70         1.87         3.12         2.56         5.39 
TCGA-06-A7TL TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 
        5.42        22.68        37.84         4.18       115.86         1.74 
TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 
        8.42        25.71        12.16         9.80        29.23        65.33 
TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 
        1.28         8.42        17.95        24.56        31.10        37.58 
TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0389 TCGA-08-0390 
       22.29         3.39        12.23        14.93        15.35        13.97 
TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 
        0.72        12.56         4.27        42.15        11.08        19.59 
TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 
       19.33        10.75         4.80         7.27        15.98        18.41 
TCGA-08-0531 TCGA-12-0615 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0654 
        7.56        15.35        12.99        34.92        10.45         7.59 
TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 
       94.78         0.10        38.17        26.66        12.13         3.65 
TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 
       20.38        28.41        15.06        53.85        43.23         7.63 
TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 
        9.73        14.93        14.86        91.76        24.79        18.48 
TCGA-12-0821 TCGA-12-0822 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 
       10.62        23.51        38.76         8.94        20.58       127.59 
TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 TCGA-12-1094 TCGA-12-1095 
        5.82         7.59        33.21        21.73        12.23        15.85 
TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 TCGA-12-1599 TCGA-12-1600 
        9.11        14.53         3.98         4.14        25.68        14.73 
TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 
        6.77        59.77        44.02        26.93        15.22        10.95 
TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 
       12.69        34.92        14.53        14.93         3.22         2.04 
TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 
       15.12        11.97         0.95         6.21        23.05         2.24 
TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 
       11.24        13.78         3.25         1.35         5.39         2.89 
TCGA-14-0865 TCGA-14-0866 TCGA-14-0867 TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 
       16.50        26.33         2.04        15.95        19.30         0.79 
TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 
        1.38         1.12         3.75        32.05        58.78        23.11 
TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 
        7.10         1.15        30.18         0.92        40.96         6.67 
TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 TCGA-14-1823 TCGA-14-1825 
       12.43         0.99         1.97        17.79        17.85         7.63 
TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-3477 TCGA-14-4157 
        5.88         7.17        17.49         7.96         3.78         3.42 
TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 TCGA-15-1447 TCGA-15-1449 TCGA-16-0846 
       13.78        50.53        19.10        53.19        13.28         3.91 
TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 
       17.59        26.07        16.37         4.31        29.03         4.57 
TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 
       10.29        14.01         9.14        21.24        13.97         6.41 
TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 
       11.77        21.90         8.61         0.66        14.27         3.39 
TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1389 TCGA-19-1390 TCGA-19-1392 
       10.75         9.07         5.95         4.64        25.38         3.65 
TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 
        7.17        12.66         3.25         0.13         9.67         4.87 
TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 
        1.08         7.53         0.16         4.08        24.23         7.00 
TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 
        6.64        17.19         8.02        18.90         4.73        12.10 
TCGA-19-5955 TCGA-19-5956 TCGA-19-5959 TCGA-19-5960 TCGA-19-A6J4 TCGA-19-A6J5 
        1.78        22.49        16.80        14.96         3.98        28.54 
TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 
       10.03        13.87         9.73        31.33         7.13         9.37 
TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 
        9.40        14.86         5.49         8.88        18.97         1.58 
TCGA-26-6173 TCGA-26-6174 TCGA-26-A7UX TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 
        7.92         2.33        19.33         5.06        16.60         9.86 
TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-2518 
       24.23        40.54        21.30        30.05        14.04        24.76 
TCGA-27-2519 TCGA-27-2523 TCGA-27-2524 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 
       10.39        16.08         7.59        14.40        15.78         0.20 
TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 
        2.53         9.21         8.35         7.63         8.48         1.22 
TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 
        1.55         2.83         0.13         0.66         6.74         4.77 
TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 
        7.30         5.26        14.93        17.88        14.53        11.77 
TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 
       31.27        23.44        11.01        13.64         5.16        22.68 
TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 
       12.76         5.42        15.39        21.07         0.49         0.10 
TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 
       15.85        19.50         1.18         4.67        12.69        14.86 
TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2616 
       16.93        12.23        20.78        15.02        15.95         7.36 
TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4210 TCGA-32-4211 
        8.84        22.78        25.18        21.14         3.72        12.59 
TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 
       19.86        10.85        19.23         0.85        13.35         8.94 
TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 
        9.53         0.99         4.44        11.84         0.20        15.12 
TCGA-41-6646 TCGA-4W-AA9S TCGA-4W-AA9T TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 
       12.46         4.14        14.76         3.45        20.91         4.34 
TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 
       14.33         8.22         7.50         4.80         4.54         3.09 
TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 
        3.65         9.17         2.53        10.78        16.70         3.29 
TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 
        2.70        11.38        17.06         8.35        20.98         4.83 
TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 
        5.03         0.23         9.27         7.73         7.79         1.61 
TCGA-81-5911 TCGA-87-5896 TCGA-OX-A56R TCGA-RR-A6KA TCGA-RR-A6KC TCGA-CS-4938 
       17.72        26.30         5.92         6.28        20.55         4.70 
TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 
        7.69        43.89        18.15        10.62        64.64        40.18 
TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 
        0.10        21.01         6.38        17.69        23.84        17.95 
TCGA-CS-6665 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 
       12.43         7.56         8.02         7.40         6.61       122.73 
TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 
       81.96        75.25        47.93        72.92        50.86        50.17 
TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC 
       44.52        36.56        78.28        18.84        30.21        46.72 
TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64O 
       39.78        37.45        33.57        72.95        31.63        25.48 
TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V 
       30.12         5.98        31.40        27.45        27.81        29.23 
TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O 
       14.40        18.51        12.10        11.24        17.88        30.74 
TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-A669 
       16.18        19.96        31.82        30.31        14.40        30.21 
TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US 
       42.05        27.81        17.19        17.19        54.25        13.12 
TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 
       13.38         3.45        18.61        18.02        14.56        17.46 
TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 
        6.74        13.38         8.45         6.81       182.33        18.94 
TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 
       17.49        15.16        22.42        49.02        75.16        46.06 
TCGA-DU-6399 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 
       65.75        87.45         7.04        11.64       133.74        19.89 
TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 
       16.83        94.52       114.08         7.96         7.73        11.47 
TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 
       62.96       156.23       138.28        14.99       105.21         6.54 
TCGA-DU-7013 TCGA-DU-7014 TCGA-DU-7015 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 
        8.84       117.40        90.77        26.30        10.36         7.96 
TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 
       94.32        18.94        44.02        62.01        25.91        60.30 
TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 
       23.31        41.98         2.76         5.10        23.74        14.60 
TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-A5TP 
       20.68        21.40        19.13        16.96        15.48        14.24 
TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TY TCGA-DU-A6S2 
       12.59        15.12         4.96         3.65        12.20         8.65 
TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R 
        2.70        77.98        11.41        26.76         7.13        21.30 
TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD 
       17.98       124.50        77.88        42.31        23.51         7.50 
TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 
       44.42         0.56        50.14        67.46        41.13        79.99 
TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YO 
       57.93       134.27        78.21        95.57       130.78        75.02 
TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 
       32.45        36.82        32.35        14.33         0.23         0.20 
TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 
       25.48        34.36        36.82        18.77        14.93        24.99 
TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7636 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 
       23.97        18.44        17.88        22.55        20.61        20.09 
TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 
       12.95        13.68        14.24        16.01        20.09        14.96 
TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX 
       22.52        32.61        38.27        10.72        18.38        18.71 
TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 
       23.70        14.76        17.82        16.41        15.02        16.44 
TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 
       22.26        28.54        10.78        36.66        48.69        20.45 
TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 
       13.58         5.72        27.52         0.10         6.67        11.54 
TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 
       40.11         0.13         0.03        16.54         3.75        17.42 
TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 
        6.54        24.26         6.38        40.34        75.19        95.93 
TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 
      106.95       172.77         4.01         5.03        29.85        23.18 
TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 
      122.47         4.57        17.29         3.16        22.06        45.99 
TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 
       56.09        57.60         0.23        14.27         0.16        16.24 
TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 
        0.76        44.68        42.74         0.10        31.69        14.96 
TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 
        0.10         0.10         2.96        17.52         6.90        14.53 
TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 
       39.48        19.23        39.09         0.23        50.63         0.49 
TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 
       23.61        37.15         0.33         0.13         3.68         5.33 
TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 
       35.47         3.72        11.28        31.43         1.64        16.24 
TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 
        9.40        63.55         0.10        37.87        33.01        12.23 
TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8110 TCGA-HT-8111 
        6.25         0.10         0.46         2.50        13.78         0.23 
TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV 
       29.59        34.19        28.27        15.72         0.23        26.04 
TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC 
        0.13        20.22         0.07        27.35         0.10         5.33 
TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 
        2.70        16.93         1.81        16.14        16.83        21.40 
TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74L TCGA-HT-A74O 
       17.52        17.65         2.43        10.52        11.05         0.10 
TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7493 
       29.92        19.89         8.32        19.23        40.18        35.90 
TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ 
        4.31        21.70        21.60        19.59        17.82        20.35 
TCGA-HW-A5KK TCGA-HW-A5KL TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 
       12.76        20.81        19.00        42.77        14.40        14.40 
TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 
        0.23         6.71         1.64         2.37         2.30         4.11 
TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W 
        5.88         7.63         0.76         1.28         0.16        10.42 
TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-QH-A65R 
       13.25        11.64         0.20         9.01        13.61        15.16 
TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV 
        2.53        12.62        14.04        19.33        14.83        14.53 
TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 
       13.61        12.23         2.20        10.29        14.53        16.34 
TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 
       16.73         1.91        16.50         5.03        11.08        12.99 
TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y 
       88.83        94.03        32.65        59.38        30.87         5.46 
TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU 
        9.90        28.08         2.07        30.67        62.17        87.12 
TCGA-S9-A6TV TCGA-S9-A6TX TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 
       18.77        34.49        28.70        22.95        17.62        23.64 
TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB 
       32.61        16.08        98.24        95.93         5.85       106.39 
TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM 
       69.50        72.59        80.12        84.99        31.10        19.86 
TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS 
       15.91        18.61        15.16        14.07        36.13         7.92 
TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 
       22.32        23.51         7.13        20.02         8.19         2.04 
TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 
       17.03        15.06        13.12        13.02       169.84        10.39 
TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z 
       99.06        30.05        98.63        31.59        18.71        11.97 
TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B 
       49.45        48.33        49.32        34.78        48.39        24.92 
TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J 
       16.18        59.05        40.64        30.44        28.08        24.16 
TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S 
       40.83        24.79        33.24        25.38        18.61        14.93 
TCGA-TM-A84T TCGA-TQ-A7RH TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CB TCGA-VM-A8CD 
       23.80        15.98        43.04        30.08         0.10         7.89 
TCGA-VM-A8CE TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI 
       35.93        23.47        37.05        16.01        23.21         8.05 
TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B 
       51.06        13.32        43.96        39.88        43.40        45.80 
TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       46.88        37.71        20.81 

  AMP PEAK 19(11P13) MUTATED AMP PEAK 19(11P13) WILD-TYPE 
                        1.08                         0.03 
  AMP PEAK 19(11P13) MUTATED AMP PEAK 19(11P13) WILD-TYPE 
                      211.17                       182.33 
  AMP PEAK 19(11P13) MUTATED AMP PEAK 19(11P13) WILD-TYPE 
                       15.35                        14.76 
[1] "1.1 - 211.2 (15.3)" "0.0 - 182.3 (14.8)"
[1] "hr=" "1"  
D19V2, continuous
D19V3, binary
                              cls
clus                             0   1
  AMP PEAK 19(11P13) MUTATED    30  28
  AMP PEAK 19(11P13) WILD-TYPE 540 444
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 19(11P13) MUTATED     30   28
  AMP PEAK 19(11P13) WILD-TYPE  540  444
                        clus
vv                       AMP PEAK 19(11P13) MUTATED
  BRAIN                                          30
  CENTRAL NERVOUS SYSTEM                         28
                        clus
vv                       AMP PEAK 19(11P13) WILD-TYPE
  BRAIN                                           540
  CENTRAL NERVOUS SYSTEM                          444
[1] 2 2
[1] FALSE
D19V4, binary
                              cls
clus                             0   1
  AMP PEAK 19(11P13) MUTATED    28  30
  AMP PEAK 19(11P13) WILD-TYPE 402 582
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 19(11P13) MUTATED     28   30
  AMP PEAK 19(11P13) WILD-TYPE  402  582
        clus
vv       AMP PEAK 19(11P13) MUTATED AMP PEAK 19(11P13) WILD-TYPE
  FEMALE                         28                          402
  MALE                           30                          582
[1] 2 2
[1] FALSE
D19V5, continuous
                              vv
clus                           ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  AMP PEAK 19(11P13) MUTATED             5                             2
  AMP PEAK 19(11P13) WILD-TYPE         171                            25
                              vv
clus                           OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  AMP PEAK 19(11P13) MUTATED                  7                16
  AMP PEAK 19(11P13) WILD-TYPE              111               162
                              vv
clus                           TREATED PRIMARY GBM
  AMP PEAK 19(11P13) MUTATED                     1
  AMP PEAK 19(11P13) WILD-TYPE                  17
                              vv
clus                           UNTREATED PRIMARY (DE NOVO) GBM
  AMP PEAK 19(11P13) MUTATED                                27
  AMP PEAK 19(11P13) WILD-TYPE                             498
D19V6, multiclass
                                 clus
vv                                AMP PEAK 19(11P13) MUTATED
  ASTROCYTOMA                                              5
  GLIOBLASTOMA MULTIFORME (GBM)                            2
  OLIGOASTROCYTOMA                                         7
  OLIGODENDROGLIOMA                                       16
  TREATED PRIMARY GBM                                      1
  UNTREATED PRIMARY (DE NOVO) GBM                         27
                                 clus
vv                                AMP PEAK 19(11P13) WILD-TYPE
  ASTROCYTOMA                                              171
  GLIOBLASTOMA MULTIFORME (GBM)                             25
  OLIGOASTROCYTOMA                                         111
  OLIGODENDROGLIOMA                                        162
  TREATED PRIMARY GBM                                       17
  UNTREATED PRIMARY (DE NOVO) GBM                          498
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D19V7, binary
                              cls
clus                             0   1
  AMP PEAK 19(11P13) MUTATED    25  33
  AMP PEAK 19(11P13) WILD-TYPE 449 535
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 19(11P13) MUTATED     25   33
  AMP PEAK 19(11P13) WILD-TYPE  449  535
     clus
vv    AMP PEAK 19(11P13) MUTATED AMP PEAK 19(11P13) WILD-TYPE
  NO                          25                          449
  YES                         33                          535
[1] 2 2
[1] FALSE
                              vv
clus                           AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK 19(11P13) MUTATED                                  0     1
  AMP PEAK 19(11P13) WILD-TYPE                                1    20
                              vv
clus                           BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 19(11P13) MUTATED                           3    53
  AMP PEAK 19(11P13) WILD-TYPE                        61   869
D19V8, multiclass
                                  clus
vv                                 AMP PEAK 19(11P13) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                          0
  ASIAN                                                     1
  BLACK OR AFRICAN AMERICAN                                 3
  WHITE                                                    53
                                  clus
vv                                 AMP PEAK 19(11P13) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                            1
  ASIAN                                                      20
  BLACK OR AFRICAN AMERICAN                                  61
  WHITE                                                     869
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D19V9, binary
                              cls
clus                             0   1
  AMP PEAK 19(11P13) MUTATED     3  51
  AMP PEAK 19(11P13) WILD-TYPE  27 840
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 19(11P13) MUTATED      3   51
  AMP PEAK 19(11P13) WILD-TYPE   27  840
                        clus
vv                       AMP PEAK 19(11P13) MUTATED
  HISPANIC OR LATINO                              3
  NOT HISPANIC OR LATINO                         51
                        clus
vv                       AMP PEAK 19(11P13) WILD-TYPE
  HISPANIC OR LATINO                               27
  NOT HISPANIC OR LATINO                          840
[1] 2 2
[1] FALSE

Clustering(20) Variable = AMP PEAK 20(11Q24.1) MUTATION ANALYSIS
D20V1, survival
                                sevent
clus2                              0   1
  AMP PEAK 20(11Q24.1) MUTATED    71  36
  AMP PEAK 20(11Q24.1) WILD-TYPE 409 523
  AMP PEAK 20(11Q24.1) MUTATED AMP PEAK 20(11Q24.1) WILD-TYPE 
                           107                            932 
  AMP PEAK 20(11Q24.1) MUTATED AMP PEAK 20(11Q24.1) WILD-TYPE 
                            36                            523 
$`AMP PEAK 20(11Q24.1) MUTATED`
TCGA-02-0080 TCGA-02-0106 TCGA-02-2466 TCGA-06-0128 TCGA-06-0175 TCGA-06-0195 
       89.72        11.67        16.80        22.72         4.04         7.40 
TCGA-06-0221 TCGA-06-1086 TCGA-06-1087 TCGA-06-6389 TCGA-08-0386 TCGA-12-0818 
       19.82         6.84         4.04         7.79        18.02        91.76 
TCGA-12-0826 TCGA-12-0827 TCGA-14-1453 TCGA-16-0850 TCGA-16-0861 TCGA-19-1388 
       27.78        38.76         1.15        16.37         4.31        12.95 
TCGA-19-2623 TCGA-19-4065 TCGA-19-5960 TCGA-26-5133 TCGA-27-1836 TCGA-27-2521 
        7.53         7.04        14.96        14.86        30.05        10.39 
TCGA-28-5207 TCGA-CS-5396 TCGA-DB-5277 TCGA-DB-A4X9 TCGA-DB-A4XB TCGA-DB-A4XC 
       11.28         9.96        50.86        46.42        30.21        46.72 
TCGA-DB-A4XD TCGA-DB-A64L TCGA-DB-A64Q TCGA-DB-A64V TCGA-DB-A75L TCGA-DH-5144 
       39.78        24.20         5.98        29.23        11.24         8.02 
TCGA-DH-A66D TCGA-DH-A7UT TCGA-DU-5852 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 
       27.81        13.38         6.74         6.81       182.33        18.94 
TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6397 TCGA-DU-6400 TCGA-DU-6407 TCGA-DU-7015 
      211.17        52.11        46.06         1.22        94.52        90.77 
TCGA-DU-7018 TCGA-DU-7298 TCGA-DU-7301 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 
       30.67        18.94        25.91        23.31        41.98         2.76 
TCGA-DU-A5TT TCGA-DU-A5TW TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-E1-5304 TCGA-E1-5318 
        4.96         5.65         7.23         5.98        41.13        78.21 
TCGA-FG-5962 TCGA-FG-7634 TCGA-FG-8191 TCGA-FG-A60L TCGA-HT-7470 TCGA-HT-7474 
       47.77        15.35        32.61        16.41        40.11         3.75 
TCGA-HT-7601 TCGA-HT-7604 TCGA-HT-7607 TCGA-HT-7676 TCGA-HT-7684 TCGA-HT-7688 
        5.03       122.47         3.16         0.16         6.05        31.69 
TCGA-HT-7693 TCGA-HT-8109 TCGA-HT-A74H TCGA-HT-A74K TCGA-HW-7490 TCGA-HW-8319 
       17.52         5.56         2.43        15.35        19.23        21.70 
TCGA-HW-8321 TCGA-P5-A5EV TCGA-P5-A72W TCGA-QH-A65S TCGA-QH-A65X TCGA-QH-A6CZ 
       19.59         0.23        10.42         2.53        15.85         9.17 
TCGA-QH-A6X9 TCGA-RY-A840 TCGA-RY-A845 TCGA-S9-A6TU TCGA-S9-A6TW TCGA-S9-A6TY 
        1.91        28.08        19.59        87.12        37.84        31.33 
TCGA-S9-A6WD TCGA-S9-A6WH TCGA-S9-A6WN TCGA-S9-A7IZ TCGA-S9-A7QY TCGA-S9-A7QZ 
       69.50        32.45        15.91         7.13        28.37        13.02 
TCGA-S9-A7R8 TCGA-S9-A89Z TCGA-TM-A84B TCGA-TM-A84I TCGA-TM-A84J TCGA-TQ-A7RW 
       31.59        11.97        24.92        28.08        24.16        26.99 
TCGA-VM-A8C8 TCGA-VM-A8CA TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85E 
       43.04        13.51        45.80        46.88        20.81 

$`AMP PEAK 20(11Q24.1) WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
       11.77         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 
       20.71        82.59        20.61        87.06        77.65        20.12 
TCGA-02-0024 TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 
       53.10        42.74        24.59        12.16        90.58         2.83 
TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 
       14.14         3.62        10.72        10.52        18.31         6.87 
TCGA-02-0047 TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 
       14.73         3.22        15.09        12.59         6.54         2.50 
TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 
       19.86         8.35         9.57         6.02        19.73        26.43 
TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 
       28.70        25.05         5.49        10.19        20.84        27.25 
TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 
       22.72        12.62        51.32         8.81        57.76        16.96 
TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 
        3.48        27.02        65.00        17.65        23.18        92.65 
TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 
       99.98        15.65        48.95        16.54        16.93        17.72 
TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 
       10.75        14.47         3.98        13.87        14.20        15.95 
TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 
       12.23         9.90         7.73        10.62         7.33        15.91 
TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 
       25.71         4.37        25.12        10.59        12.39        14.50 
TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 
       10.55        47.11        11.34         9.27        16.21         3.35 
TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 
       12.92        15.32        15.45        20.32         2.70         6.15 
TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0129 TCGA-06-0130 
       20.38        47.61         6.94         3.98        33.67        12.95 
TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 
       25.35        14.30        26.70        24.23        11.90         0.20 
TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 
       10.29         2.20        11.74         2.33        20.09        17.79 
TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 
       10.09         8.61        19.46        46.59        12.33        13.94 
TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 
       10.45         3.19        10.82         9.44        11.80         3.42 
TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 
       56.91        10.65         5.85        19.66         3.29        13.12 
TCGA-06-0173 TCGA-06-0174 TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 
        4.47         3.22        91.00         4.18        88.14        20.25 
TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 
        3.65        69.90        73.84        27.22        44.58        15.42 
TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 
       10.42        38.96         4.67         5.56         0.39         7.66 
TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 
        8.42         7.63         7.40        11.84         0.53        15.02 
TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 
       24.16         0.72        13.64        13.32        20.42        48.69 
TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 TCGA-06-0412 
       10.82         9.01         0.26        72.36         4.70         9.57 
TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 
        3.16        35.11        12.62         5.75         5.75         9.80 
TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 
        2.10        23.57        14.20        26.40        46.88         7.86 
TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 
        2.70         2.70         0.92        43.46        46.19         5.65 
TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 
        7.17        40.41        16.57        20.78        26.76        23.93 
TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-1806 
       26.79        11.84        15.32        13.61        33.90        15.32 
TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 
        1.08        12.49         4.93        17.65        12.56        30.64 
TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 
        5.95        16.64         5.98         4.37         0.43        31.50 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 
       11.74         3.55         8.35         4.54         8.81         8.98 
TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 
        8.55         6.71         2.73         3.75         6.15         4.57 
TCGA-06-6388 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 
        5.23         5.39         1.48       120.56         7.36         8.32 
TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-06-A5U0 
       12.85         4.77         1.55         4.77         4.96         4.70 
TCGA-06-A5U1 TCGA-06-A6S0 TCGA-06-A6S1 TCGA-06-A7TK TCGA-06-A7TL TCGA-08-0244 
        1.87         3.12         2.56         5.39         5.42        22.68 
TCGA-08-0245 TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 
       37.84         4.18       115.86         1.74         8.42        25.71 
TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 
       12.16         9.80        29.23        65.33         1.28         8.42 
TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 
       17.95        24.56        31.10        37.58        22.29         3.39 
TCGA-08-0375 TCGA-08-0380 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 
       12.23        14.93        15.35        13.97         0.72        12.56 
TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 
        4.27        42.15        11.08        19.59        58.68        19.33 
TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 
       10.75         4.80         7.27        15.98        18.41         7.56 
TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0654 
       15.35        14.73        12.99        34.92        10.45         7.59 
TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 
       94.78         0.10        38.17        25.97        26.66        12.13 
TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 
        3.65        20.38        28.41        15.06        53.85        43.23 
TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0819 TCGA-12-0820 
        7.63         9.73        14.93        14.86        24.79        18.48 
TCGA-12-0821 TCGA-12-0822 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 
       10.62        23.51         8.94        20.58       127.59         5.82 
TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 
        7.59        33.21        21.73        15.98        12.23        15.85 
TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 TCGA-12-1598 TCGA-12-1599 
        9.11        14.53         3.98         4.14        15.65        25.68 
TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 
       14.73         6.77        59.77        44.02        26.93        15.22 
TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 
       10.95        12.69        34.92        14.53        14.93         3.22 
TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 
        2.04        15.12        11.97         0.95         6.21        23.05 
TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 
        2.24        11.24        13.78         3.25         1.35         5.39 
TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 TCGA-14-0867 TCGA-14-0871 TCGA-14-1034 
        2.89        16.50        26.33         2.04        28.93        15.95 
TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 
       19.30         0.79         1.38         1.12         3.75        32.05 
TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 
       58.78        23.11         7.10        30.18         0.92        40.96 
TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 TCGA-14-1823 
        6.67        12.43         0.99         1.97        17.79        17.85 
TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-3477 
        7.63         5.88         7.17        17.49         7.96         3.78 
TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 TCGA-15-1447 TCGA-15-1449 
        3.42        13.78        50.53        19.10        53.19        13.28 
TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 
        3.91        17.59        26.07        29.03         4.57        10.29 
TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 
       14.01         9.14        21.24        13.97         6.41        11.77 
TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 
       21.90         8.61         0.66        14.27         3.39        10.75 
TCGA-19-1386 TCGA-19-1387 TCGA-19-1389 TCGA-19-1390 TCGA-19-1392 TCGA-19-1786 
        9.07         5.95         4.64        25.38         3.65         7.17 
TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 
       12.66         3.25         0.13         9.67         4.87         1.08 
TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-5947 TCGA-19-5950 
        0.16         4.08        24.23         7.00         6.64        17.19 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 
        8.02        18.90         4.73        12.10         1.78        22.49 
TCGA-19-5958 TCGA-19-5959 TCGA-19-A60I TCGA-19-A6J4 TCGA-19-A6J5 TCGA-26-1438 
       14.07        16.80        17.79         3.98        28.54        10.03 
TCGA-26-1439 TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 
       13.87         9.73        31.33         7.13         9.37         9.40 
TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 
        5.49         8.88        18.97         1.58         7.92         2.33 
TCGA-26-A7UX TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 
       19.33         5.06        16.60         9.86        24.23        40.54 
TCGA-27-1835 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2523 
       21.30        14.04        11.51        24.76        10.39        16.08 
TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 
        7.59         2.86        14.40        15.78         0.20         2.53 
TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 
        9.21         8.35         7.63         8.48         1.22         1.55 
TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 TCGA-28-2513 
        2.83         0.13         0.66         6.74         4.77         7.30 
TCGA-28-2514 TCGA-28-5204 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 
        5.26        14.93        17.88        14.53        11.77        31.27 
TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 
       23.44        11.01        13.64         5.16        22.68        12.76 
TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 
        5.42        15.39        21.07         0.49         0.10        15.85 
TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 
       19.50         1.18         4.67        12.69        14.86        16.93 
TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2616 TCGA-32-2632 
       12.23        20.78        15.02        15.95         7.36         8.84 
TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 
       22.78        25.18        21.14         3.72        12.59        19.86 
TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 
       10.85        19.23         0.85        13.35         8.94         9.53 
TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 
        0.99         4.44        11.84         0.20        15.12        12.46 
TCGA-4W-AA9S TCGA-4W-AA9T TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 
        4.14        14.76         3.45        20.91         4.34        14.33 
TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 
        8.22         7.50         4.80         4.54         3.09         3.65 
TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 
        9.17         2.53        10.78        16.70         3.29         2.70 
TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 
       11.38        17.06         8.35        20.98         4.83         5.03 
TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 
        0.23         9.27         7.73         7.79         1.61        17.72 
TCGA-87-5896 TCGA-OX-A56R TCGA-RR-A6KA TCGA-RR-A6KC TCGA-CS-4938 TCGA-CS-4941 
       26.30         5.92         6.28        20.55         4.70         7.69 
TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 
       43.89        18.15        10.62        64.64        40.18         0.10 
TCGA-CS-5395 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 
       21.01         6.38        17.69        23.84        17.95        12.43 
TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 
        8.48         7.56         8.02         7.40         6.61       122.73 
TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5278 TCGA-DB-5279 
       81.96        75.25        47.93        72.92        50.17        44.52 
TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4XA TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG 
       36.56        78.28        18.84        37.45        33.57        72.95 
TCGA-DB-A4XH TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U 
       31.63        25.48        30.12        31.40        27.45        27.81 
TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P 
       14.40        18.51        12.10        17.88        30.74        16.18 
TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-A669 TCGA-DH-A66B 
       19.96        31.82        30.31        14.40        30.21        42.05 
TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UU TCGA-DH-A7UV 
       17.19        17.19        54.25        13.12         3.45        18.61 
TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5872 
       18.02        14.56        17.46        13.38         8.45        17.49 
TCGA-DU-5874 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6399 TCGA-DU-6401 
       15.16        22.42        49.02        75.16        65.75        87.45 
TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6408 
        7.04        11.64       133.74        19.89        16.83       114.08 
TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 
        7.96         7.73        11.47        62.96       156.23       138.28 
TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7014 TCGA-DU-7019 
       14.99       105.21         6.54         8.84       117.40        26.30 
TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7302 
       10.36         7.96        94.32        44.02        62.01        60.30 
TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 
        5.10        23.74        14.60        20.68        21.40        19.13 
TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS 
       16.96        15.48        14.17        14.24        12.59        15.12 
TCGA-DU-A5TU TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A76K 
        3.65        12.20         8.65         2.70        77.98        11.41 
TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA 
       26.76         7.13        21.30        17.98       124.50        77.88 
TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 
       42.31        23.51         7.50        44.42         0.56        50.14 
TCGA-E1-5303 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5319 TCGA-E1-5322 
       67.46        79.99        57.93       134.27        95.57       130.78 
TCGA-E1-A7YO TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 
       75.02        32.45        36.82        32.35        14.33         0.23 
TCGA-F6-A8O4 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 
        0.20        25.48        34.36        36.82        18.77        14.93 
TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7636 TCGA-FG-7638 TCGA-FG-7641 
       24.99        23.97        18.44        17.88        22.55        20.61 
TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 
       20.09        12.95        13.68        14.24        16.01        20.09 
TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX 
       14.96        22.52        38.27        10.72        18.38        18.71 
TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 
       23.70        14.76        17.82        15.02        16.44        22.26 
TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N 
       28.54        10.78        36.66        48.69        20.45        13.58 
TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7471 
        5.72        27.52         0.10         6.67        11.54         0.13 
TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 
        0.03        16.54        17.42         6.54        24.26         6.38 
TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 
       40.34        75.19        95.93       106.95       172.77         4.01 
TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7608 TCGA-HT-7609 
       29.85        23.18         4.57        17.29        22.06        45.99 
TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7677 TCGA-HT-7680 
       56.09        57.60         0.23        14.27        16.24         0.76 
TCGA-HT-7681 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 
       44.68        42.74         0.10        14.96         0.10         0.10 
TCGA-HT-7692 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 
        2.96         6.90        14.53        39.48        19.23        39.09 
TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 
        0.23        50.63         0.49        23.61        37.15         0.33 
TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 
        0.13         3.68         5.33        35.47         3.72        11.28 
TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 
       31.43         1.64        16.24         9.40        63.55         0.10 
TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 
       37.87        33.01        12.23         6.25         0.10         0.46 
TCGA-HT-8108 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8563 
        2.50        13.78         0.23        29.59        34.19        28.27 
TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 
       15.72         0.23        26.04         0.13        20.22         0.07 
TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 
       27.35         0.10         5.33         2.70        16.93         1.81 
TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74J 
       16.14        16.83        21.40        17.52        17.65        10.52 
TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7491 
       11.05         0.10        29.92        19.89         8.32        40.18 
TCGA-HW-7493 TCGA-HW-7495 TCGA-HW-8320 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK 
       35.90         4.31        21.60        17.82        20.35        12.76 
TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 
       20.81        20.71        19.00        42.77        14.40        14.40 
TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 
        6.71         1.64         2.37         2.30         4.11         5.88 
TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72X TCGA-P5-A72Z 
        7.63         0.76         1.28         0.16        13.25        11.64 
TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-QH-A65R TCGA-QH-A65V TCGA-QH-A65Z 
        0.20         9.01        13.61        15.16        12.62        14.04 
TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY 
       19.33        14.83        14.53        13.61        12.23         2.20 
TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6XA TCGA-QH-A6XC 
       10.29        14.53        16.34        16.73        16.50         5.03 
TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M 
       11.08        12.99        88.83        94.03        32.65        59.38 
TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A843 TCGA-RY-A847 TCGA-S9-A6TS 
       30.87         5.46         9.90         2.07        30.67        62.17 
TCGA-S9-A6TV TCGA-S9-A6TX TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 
       18.77        34.49        28.70        22.95        17.62        23.64 
TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB 
       32.61        16.08        98.24        95.93         5.85       106.39 
TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WO 
       72.59        80.12        84.99        31.10        19.86        18.61 
TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY 
       15.16        14.07        36.13         7.92        22.32        23.51 
TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX 
       20.02         8.19         2.04        17.03        15.06        13.12 
TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A89V 
      169.84        10.39        99.06        30.05        98.63        18.71 
TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84C 
       49.45        48.33        49.32        34.78        48.39        16.18 
TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O 
       59.05        40.64        30.44        40.83        24.79        33.24 
TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RH TCGA-VM-A8C9 
       25.38        18.61        14.93        23.80        15.98        30.08 
TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M 
        0.10         7.89        35.93        23.47        37.05        16.01 
TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 
       23.21         8.05        51.06        13.32        43.96        39.88 
TCGA-WY-A85A TCGA-WY-A85D 
       43.40        37.71 

  AMP PEAK 20(11Q24.1) MUTATED AMP PEAK 20(11Q24.1) WILD-TYPE 
                          0.16                           0.03 
  AMP PEAK 20(11Q24.1) MUTATED AMP PEAK 20(11Q24.1) WILD-TYPE 
                        211.17                         172.77 
  AMP PEAK 20(11Q24.1) MUTATED AMP PEAK 20(11Q24.1) WILD-TYPE 
                         18.94                          14.53 
[1] "0.2 - 211.2 (18.9)" "0.0 - 172.8 (14.5)"
[1] "hr=" "2.1"
D20V2, continuous
D20V3, binary
                                cls
clus                               0   1
  AMP PEAK 20(11Q24.1) MUTATED    25  82
  AMP PEAK 20(11Q24.1) WILD-TYPE 545 390
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 20(11Q24.1) MUTATED     25   82
  AMP PEAK 20(11Q24.1) WILD-TYPE  545  390
                        clus
vv                       AMP PEAK 20(11Q24.1) MUTATED
  BRAIN                                            25
  CENTRAL NERVOUS SYSTEM                           82
                        clus
vv                       AMP PEAK 20(11Q24.1) WILD-TYPE
  BRAIN                                             545
  CENTRAL NERVOUS SYSTEM                            390
[1] 2 2
[1] FALSE
D20V4, binary
                                cls
clus                               0   1
  AMP PEAK 20(11Q24.1) MUTATED    45  62
  AMP PEAK 20(11Q24.1) WILD-TYPE 385 550
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 20(11Q24.1) MUTATED     45   62
  AMP PEAK 20(11Q24.1) WILD-TYPE  385  550
        clus
vv       AMP PEAK 20(11Q24.1) MUTATED AMP PEAK 20(11Q24.1) WILD-TYPE
  FEMALE                           45                            385
  MALE                             62                            550
[1] 2 2
[1] FALSE
D20V5, continuous
                                vv
clus                             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  AMP PEAK 20(11Q24.1) MUTATED            30                             0
  AMP PEAK 20(11Q24.1) WILD-TYPE         146                            27
                                vv
clus                             OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  AMP PEAK 20(11Q24.1) MUTATED                 17                35
  AMP PEAK 20(11Q24.1) WILD-TYPE              101               143
                                vv
clus                             TREATED PRIMARY GBM
  AMP PEAK 20(11Q24.1) MUTATED                     1
  AMP PEAK 20(11Q24.1) WILD-TYPE                  17
                                vv
clus                             UNTREATED PRIMARY (DE NOVO) GBM
  AMP PEAK 20(11Q24.1) MUTATED                                24
  AMP PEAK 20(11Q24.1) WILD-TYPE                             501
D20V6, multiclass
                                 clus
vv                                AMP PEAK 20(11Q24.1) MUTATED
  ASTROCYTOMA                                               30
  GLIOBLASTOMA MULTIFORME (GBM)                              0
  OLIGOASTROCYTOMA                                          17
  OLIGODENDROGLIOMA                                         35
  TREATED PRIMARY GBM                                        1
  UNTREATED PRIMARY (DE NOVO) GBM                           24
                                 clus
vv                                AMP PEAK 20(11Q24.1) WILD-TYPE
  ASTROCYTOMA                                                146
  GLIOBLASTOMA MULTIFORME (GBM)                               27
  OLIGOASTROCYTOMA                                           101
  OLIGODENDROGLIOMA                                          143
  TREATED PRIMARY GBM                                         17
  UNTREATED PRIMARY (DE NOVO) GBM                            501
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D20V7, binary
                                cls
clus                               0   1
  AMP PEAK 20(11Q24.1) MUTATED    37  70
  AMP PEAK 20(11Q24.1) WILD-TYPE 437 498
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 20(11Q24.1) MUTATED     37   70
  AMP PEAK 20(11Q24.1) WILD-TYPE  437  498
     clus
vv    AMP PEAK 20(11Q24.1) MUTATED AMP PEAK 20(11Q24.1) WILD-TYPE
  NO                            37                            437
  YES                           70                            498
[1] 2 2
[1] FALSE
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK 20(11Q24.1) MUTATED                                  0     0
  AMP PEAK 20(11Q24.1) WILD-TYPE                                1    21
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 20(11Q24.1) MUTATED                           4   100
  AMP PEAK 20(11Q24.1) WILD-TYPE                        60   822
D20V8, multiclass
                                  clus
vv                                 AMP PEAK 20(11Q24.1) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            0
  ASIAN                                                       0
  BLACK OR AFRICAN AMERICAN                                   4
  WHITE                                                     100
                                  clus
vv                                 AMP PEAK 20(11Q24.1) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              1
  ASIAN                                                        21
  BLACK OR AFRICAN AMERICAN                                    60
  WHITE                                                       822
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D20V9, binary
                                cls
clus                               0   1
  AMP PEAK 20(11Q24.1) MUTATED     3  94
  AMP PEAK 20(11Q24.1) WILD-TYPE  27 797
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 20(11Q24.1) MUTATED      3   94
  AMP PEAK 20(11Q24.1) WILD-TYPE   27  797
                        clus
vv                       AMP PEAK 20(11Q24.1) MUTATED
  HISPANIC OR LATINO                                3
  NOT HISPANIC OR LATINO                           94
                        clus
vv                       AMP PEAK 20(11Q24.1) WILD-TYPE
  HISPANIC OR LATINO                                 27
  NOT HISPANIC OR LATINO                            797
[1] 2 2
[1] FALSE

Clustering(21) Variable = AMP PEAK 21(12P13.32) MUTATION ANALYSIS
D21V1, survival
                                 sevent
clus2                               0   1
  AMP PEAK 21(12P13.32) MUTATED    59  86
  AMP PEAK 21(12P13.32) WILD-TYPE 421 473
  AMP PEAK 21(12P13.32) MUTATED AMP PEAK 21(12P13.32) WILD-TYPE 
                            145                             894 
  AMP PEAK 21(12P13.32) MUTATED AMP PEAK 21(12P13.32) WILD-TYPE 
                             86                             473 
$`AMP PEAK 21(12P13.32) MUTATED`
TCGA-02-0001 TCGA-02-0024 TCGA-02-0051 TCGA-02-0054 TCGA-02-0070 TCGA-02-0074 
       11.77        53.10        15.09         6.54        25.05        10.19 
TCGA-02-0084 TCGA-02-0087 TCGA-02-0266 TCGA-02-0271 TCGA-02-0324 TCGA-02-2466 
       12.62        57.76        17.72        14.47         7.73        16.80 
TCGA-06-0129 TCGA-06-0146 TCGA-06-0151 TCGA-06-0157 TCGA-06-0162 TCGA-06-0164 
       33.67        20.09        46.59         3.19         3.42        56.91 
TCGA-06-0177 TCGA-06-0184 TCGA-06-0187 TCGA-06-0188 TCGA-06-0192 TCGA-06-0216 
        4.18        69.90        27.22        44.58        38.96        24.16 
TCGA-06-0221 TCGA-06-0238 TCGA-06-0409 TCGA-06-0649 TCGA-06-0743 TCGA-06-0877 
       19.82        13.32        72.36         2.10        26.40         5.65 
TCGA-06-1086 TCGA-06-1087 TCGA-06-2561 TCGA-06-5415 TCGA-06-5856 TCGA-06-5859 
        6.84         4.04        17.65         8.55         3.75         4.57 
TCGA-06-6389 TCGA-06-6694 TCGA-06-6699 TCGA-06-A7TK TCGA-06-A7TL TCGA-08-0245 
        7.79         7.36         1.55         5.39         5.42        37.84 
TCGA-08-0246 TCGA-08-0352 TCGA-08-0392 TCGA-08-0516 TCGA-12-0691 TCGA-12-0776 
        4.18         1.28         0.72        19.59        12.13         9.73 
TCGA-12-0778 TCGA-12-0820 TCGA-12-1090 TCGA-12-1098 TCGA-12-1602 TCGA-12-3653 
       14.93        18.48         7.59         3.98         6.77        14.53 
TCGA-14-0740 TCGA-14-0790 TCGA-14-1396 TCGA-14-1453 TCGA-14-1458 TCGA-14-1821 
       11.97        13.78         1.12         1.15         6.67        17.79 
TCGA-14-1823 TCGA-14-2554 TCGA-15-1449 TCGA-16-0850 TCGA-16-1460 TCGA-19-1786 
       17.85        17.49        13.28        16.37         6.41         7.17 
TCGA-19-1787 TCGA-19-5954 TCGA-26-1438 TCGA-26-1442 TCGA-26-5132 TCGA-27-1838 
       12.66        12.10        10.03        31.33         9.40        11.51 
TCGA-28-1756 TCGA-28-2506 TCGA-28-5207 TCGA-28-5218 TCGA-32-1979 TCGA-32-1991 
        2.83         6.74        11.28         5.16        19.50        16.93 
TCGA-32-2615 TCGA-32-4208 TCGA-32-4210 TCGA-32-5222 TCGA-74-6577 TCGA-76-4928 
       15.95        21.14         3.72        19.23         4.34         3.09 
TCGA-CS-4943 TCGA-DB-5273 TCGA-DB-5275 TCGA-DB-5277 TCGA-DB-5281 TCGA-DB-A4XC 
       18.15        81.96        47.93        50.86        78.28        46.72 
TCGA-DB-A4XE TCGA-DB-A64P TCGA-DH-A669 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6399 
       37.45        30.12        30.21        49.02        75.16        65.75 
TCGA-DU-6400 TCGA-DU-6403 TCGA-DU-6408 TCGA-DU-7007 TCGA-DU-7299 TCGA-DU-7304 
        1.22        11.64       114.08        62.96        44.02        23.31 
TCGA-DU-8165 TCGA-DU-A5TP TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TY 
       19.13        14.24        15.12         4.96         3.65        12.20 
TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-A7YW TCGA-FG-5965 
      124.50        77.88        67.46        41.13        36.82        36.82 
TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-7634 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8191 
       24.99        23.97        15.35        13.68        14.24        32.61 
TCGA-FG-A6J3 TCGA-FG-A711 TCGA-HT-7469 TCGA-HT-7473 TCGA-HT-7478 TCGA-HT-7604 
       22.26        48.69        11.54        16.54         6.38       122.47 
TCGA-HT-7686 TCGA-HT-7873 TCGA-HT-7879 TCGA-HT-7884 TCGA-HT-8018 TCGA-HT-A614 
       42.74        23.61         3.68        11.28        37.87         2.70 
TCGA-HW-A5KM TCGA-QH-A6CV TCGA-S9-A6UA TCGA-S9-A6WO TCGA-S9-A7IZ TCGA-S9-A7J0 
       20.71        14.53         5.85        18.61         7.13        20.02 
TCGA-S9-A7QX TCGA-S9-A7R7 TCGA-TM-A84I TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85B 
       13.12        98.63        28.08        43.96        39.88        45.80 
TCGA-WY-A85E 
       20.81 

$`AMP PEAK 21(12P13.32) WILD-TYPE`
TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 TCGA-02-0011 
        4.73        18.35        23.18        10.59        35.41        20.71 
TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0025 
       82.59        20.61        87.06        77.65        20.12        42.74 
TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 
       24.59        12.16        90.58         2.83        14.14         3.62 
TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 
       10.72        10.52        18.31         6.87        14.73         3.22 
TCGA-02-0052 TCGA-02-0055 TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 
       12.59         2.50        19.86         8.35         9.57         6.02 
TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 TCGA-02-0071 TCGA-02-0075 TCGA-02-0079 
       19.73        26.43        28.70         5.49        20.84        27.25 
TCGA-02-0080 TCGA-02-0083 TCGA-02-0085 TCGA-02-0086 TCGA-02-0089 TCGA-02-0099 
       89.72        22.72        51.32         8.81        16.96         3.48 
TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 
       27.02        65.00        11.67        17.65        23.18        92.65 
TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0269 
       99.98        15.65        48.95        16.54        16.93        10.75 
TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 
        3.98        13.87        14.20        15.95        12.23         9.90 
TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 
       10.62         7.33        15.91        25.71         4.37        25.12 
TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 
       10.59        12.39        14.50        10.55        47.11        11.34 
TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 
        9.27        16.21         3.35        12.92        15.32        15.45 
TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 
       20.32         2.70         6.15        20.38        47.61         6.94 
TCGA-06-0127 TCGA-06-0128 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 
        3.98        22.72        12.95        25.35        14.30        26.70 
TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 
       24.23        11.90         0.20        10.29         2.20        11.74 
TCGA-06-0145 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0152 
        2.33        17.79        10.09         8.61        19.46        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0165 
       13.94        10.45        10.82         9.44        11.80        10.65 
TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 
        5.85        19.66         3.29        13.12         4.47         3.22 
TCGA-06-0175 TCGA-06-0176 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0185 
        4.04        91.00        88.14        20.25         3.65        73.84 
TCGA-06-0189 TCGA-06-0190 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 
       15.42        10.42         4.67         7.40         5.56         0.39 
TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 
        7.66         8.42         7.63         7.40        11.84         0.53 
TCGA-06-0214 TCGA-06-0219 TCGA-06-0237 TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 
       15.02         0.72        13.64        20.42        48.69        10.82 
TCGA-06-0397 TCGA-06-0402 TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 
        9.01         0.26         4.70         9.57         3.16        35.11 
TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0650 TCGA-06-0686 
       12.62         5.75         5.75         9.80        23.57        14.20 
TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 
       46.88         7.86         2.70         2.70         0.92        43.46 
TCGA-06-0876 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
       46.19         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1084 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 
       23.93        26.79        11.84        15.32        13.61        33.90 
TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2562 TCGA-06-2563 
       15.32         1.08        12.49         4.93        12.56        30.64 
TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 
        5.95        16.64         5.98         4.37         0.43        31.50 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 
       11.74         3.55         8.35         4.54         8.81         8.98 
TCGA-06-5416 TCGA-06-5418 TCGA-06-5858 TCGA-06-6388 TCGA-06-6390 TCGA-06-6391 
        6.71         2.73         6.15         5.23         5.39         1.48 
TCGA-06-6693 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6700 TCGA-06-6701 
      120.56         8.32        12.85         4.77         4.77         4.96 
TCGA-06-A5U0 TCGA-06-A5U1 TCGA-06-A6S0 TCGA-06-A6S1 TCGA-08-0244 TCGA-08-0344 
        4.70         1.87         3.12         2.56        22.68       115.86 
TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 
        1.74         8.42        25.71        12.16         9.80        29.23 
TCGA-08-0351 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 
       65.33         8.42        17.95        24.56        31.10        37.58 
TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 
       22.29         3.39        12.23        14.93        18.02        15.35 
TCGA-08-0390 TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 TCGA-08-0517 
       13.97        12.56         4.27        42.15        11.08        58.68 
TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 
       19.33        10.75         4.80         7.27        15.98        18.41 
TCGA-08-0531 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 
        7.56        15.35        14.73        12.99        34.92        10.45 
TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 
        7.59        94.78         0.10        38.17        25.97        26.66 
TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 
        3.65        20.38        28.41        15.06        53.85        43.23 
TCGA-12-0775 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0821 TCGA-12-0822 
        7.63        14.86        91.76        24.79        10.62        23.51 
TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 
       27.78        38.76         8.94        20.58       127.59         5.82 
TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 
       33.21        21.73        15.98        12.23        15.85         9.11 
TCGA-12-1097 TCGA-12-1099 TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 TCGA-12-3644 
       14.53         4.14        15.65        25.68        14.73        59.77 
TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 
       44.02        26.93        15.22        10.95        12.69        34.92 
TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0781 TCGA-14-0783 
       14.93         3.22         2.04        15.12         0.95         6.21 
TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 
       23.05         2.24        11.24         3.25         1.35         5.39 
TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 TCGA-14-0867 TCGA-14-0871 TCGA-14-1034 
        2.89        16.50        26.33         2.04        28.93        15.95 
TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 
       19.30         0.79         1.38         3.75        32.05        58.78 
TCGA-14-1451 TCGA-14-1452 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1459 
       23.11         7.10        30.18         0.92        40.96        12.43 
TCGA-14-1794 TCGA-14-1795 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2555 
        0.99         1.97         7.63         5.88         7.17         7.96 
TCGA-14-3477 TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 TCGA-15-1447 
        3.78         3.42        13.78        50.53        19.10        53.19 
TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 
        3.91        17.59        26.07         4.31        29.03         4.57 
TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-19-0955 
       10.29        14.01         9.14        21.24        13.97        11.77 
TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 
       21.90         8.61         0.66        14.27         3.39        10.75 
TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 TCGA-19-1390 TCGA-19-1392 
        9.07         5.95        12.95         4.64        25.38         3.65 
TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 
        3.25         0.13         9.67         4.87         1.08         7.53 
TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 
        0.16         4.08        24.23         7.00         7.04         6.64 
TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5955 TCGA-19-5956 
       17.19         8.02        18.90         4.73         1.78        22.49 
TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-19-A60I TCGA-19-A6J4 TCGA-19-A6J5 
       14.07        16.80        14.96        17.79         3.98        28.54 
TCGA-26-1439 TCGA-26-1440 TCGA-26-1443 TCGA-26-1799 TCGA-26-5133 TCGA-26-5134 
       13.87         9.73         7.13         9.37        14.86         5.49 
TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-26-A7UX 
        8.88        18.97         1.58         7.92         2.33        19.33 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 
        5.06        16.60         9.86        24.23        40.54        21.30 
TCGA-27-1836 TCGA-27-1837 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 
       30.05        14.04        24.76        10.39        10.39        16.08 
TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 
        7.59         2.86        14.40        15.78         0.20         2.53 
TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 
        9.21         8.35         7.63         8.48         1.22         1.55 
TCGA-28-1757 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 
        0.13         0.66         4.77         7.30         5.26        14.93 
TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 
       17.88        14.53        11.77        31.27        23.44        11.01 
TCGA-28-5216 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 
       13.64        22.68        12.76         5.42        15.39        21.07 
TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 
        0.49         0.10        15.85         1.18         4.67        12.69 
TCGA-32-1987 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2616 TCGA-32-2632 
       14.86        12.23        20.78        15.02         7.36         8.84 
TCGA-32-2634 TCGA-32-2638 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-41-2571 
       22.78        25.18        12.59        19.86        10.85         0.85 
TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 
       13.35         8.94         9.53         0.99         4.44        11.84 
TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-4W-AA9S TCGA-4W-AA9T TCGA-74-6573 
        0.20        15.12        12.46         4.14        14.76         3.45 
TCGA-74-6575 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 
       20.91        14.33         8.22         7.50         4.80         4.54 
TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 
        3.65         9.17         2.53        10.78        16.70         3.29 
TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 
        2.70        11.38        17.06         8.35        20.98         4.83 
TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 
        5.03         0.23         9.27         7.73         7.79         1.61 
TCGA-81-5911 TCGA-87-5896 TCGA-OX-A56R TCGA-RR-A6KA TCGA-RR-A6KC TCGA-CS-4938 
       17.72        26.30         5.92         6.28        20.55         4.70 
TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 
        7.69        43.89        10.62        64.64        40.18         0.10 
TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 
       21.01         9.96         6.38        17.69        23.84        17.95 
TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 
       12.43         8.48         7.56         8.02         7.40         6.61 
TCGA-DB-5270 TCGA-DB-5274 TCGA-DB-5276 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 
      122.73        75.25        72.92        50.17        44.52        36.56 
TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XD TCGA-DB-A4XF TCGA-DB-A4XG 
       46.42        18.84        30.21        39.78        33.57        72.95 
TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S 
       31.63        24.20        25.48         5.98        31.40        27.45 
TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L 
       27.81        29.23        14.40        18.51        12.10        11.24 
TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 
       17.88        30.74        16.18        19.96        31.82        30.31 
TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G 
       14.40         8.02        42.05        27.81        17.19        17.19 
TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 
       54.25        13.12        13.38         3.45        18.61        18.02 
TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 
       14.56        17.46         6.74        13.38         8.45         6.81 
TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 
      182.33        18.94        17.49        15.16       211.17        52.11 
TCGA-DU-6394 TCGA-DU-6397 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6404 TCGA-DU-6405 
       22.42        46.06        87.45         7.04       133.74        19.89 
TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7008 
       16.83        94.52         7.96         7.73        11.47       156.23 
TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7014 
      138.28        14.99       105.21         6.54         8.84       117.40 
TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 
       90.77        30.67        26.30        10.36         7.96        94.32 
TCGA-DU-7298 TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7306 TCGA-DU-7309 
       18.94        62.01        25.91        60.30        41.98         2.76 
TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8166 
        5.10        23.74        14.60        20.68        21.40        16.96 
TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TR TCGA-DU-A5TW TCGA-DU-A6S2 TCGA-DU-A6S3 
       15.48        14.17        12.59         5.65         8.65         2.70 
TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O 
       77.98         7.23         5.98        11.41        26.76         7.13 
TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG 
       21.30        17.98        42.31        23.51         7.50        44.42 
TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 
        0.56        50.14        79.99        57.93       134.27        78.21 
TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YO TCGA-E1-A7YV TCGA-E1-A7Z6 TCGA-EZ-7264 
       95.57       130.78        75.02        32.45        32.35        14.33 
TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-6688 
        0.23         0.20        47.77        25.48        34.36        18.77 
TCGA-FG-6689 TCGA-FG-6692 TCGA-FG-7636 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 
       14.93        18.44        17.88        22.55        20.61        20.09 
TCGA-FG-8181 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-A4MT 
       12.95        16.01        20.09        14.96        22.52        38.27 
TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K 
       10.72        18.38        18.71        23.70        14.76        17.82 
TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 
       16.41        15.02        16.44        28.54        10.78        36.66 
TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 
       20.45        13.58         5.72        27.52         0.10         6.67 
TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 
       40.11         0.13         0.03         3.75        17.42         6.54 
TCGA-HT-7477 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 
       24.26        40.34        75.19        95.93       106.95       172.77 
TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7605 TCGA-HT-7606 
        4.01         5.03        29.85        23.18         4.57        17.29 
TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 
        3.16        22.06        45.99        56.09        57.60         0.23 
TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 
       14.27         0.16        16.24         0.76        44.68         6.05 
TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 
        0.10        31.69        14.96         0.10         0.10         2.96 
TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 
       17.52         6.90        14.53        39.48        19.23        39.09 
TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 
        0.23        50.63         0.49        37.15         0.33         0.13 
TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 
        5.33        35.47         3.72        31.43         1.64        16.24 
TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 
        9.40        63.55         0.10        33.01        12.23         6.25 
TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 
        0.10         0.46         2.50         5.56        13.78         0.23 
TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV 
       29.59        34.19        28.27        15.72         0.23        26.04 
TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC 
        0.13        20.22         0.07        27.35         0.10         5.33 
TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61B 
       16.93         1.81        16.14        16.83        21.40        17.52 
TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O 
       17.65         2.43        10.52        15.35        11.05         0.10 
TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7493 
       29.92        19.89         8.32        19.23        40.18        35.90 
TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ 
        4.31        21.70        21.60        19.59        17.82        20.35 
TCGA-HW-A5KK TCGA-HW-A5KL TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 
       12.76        20.81        19.00        42.77        14.40        14.40 
TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 
        0.23         6.71         1.64         2.37         2.30         4.11 
TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W 
        5.88         7.63         0.76         1.28         0.16        10.42 
TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-QH-A65R 
       13.25        11.64         0.20         9.01        13.61        15.16 
TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU 
        2.53        12.62        15.85        14.04        19.33        14.83 
TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 
       13.61        12.23         2.20         9.17        10.29        14.53 
TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X 
       16.34        16.73         1.91        16.50         5.03        11.08 
TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X 
       12.99        88.83        94.03        32.65        59.38        30.87 
TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 
        5.46         9.90        28.08         2.07        19.59        30.67 
TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY 
       62.17        87.12        18.77        37.84        34.49        31.33 
TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 
       28.70        22.95        17.62        23.64        32.61        16.08 
TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG 
       98.24        95.93       106.39        69.50        72.59        80.12 
TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WP 
       32.45        84.99        31.10        19.86        15.91        15.16 
TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7J1 
       14.07        36.13         7.92        22.32        23.51         8.19 
TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 
        2.04        17.03        15.06        28.37        13.02       169.84 
TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z 
       10.39        99.06        30.05        31.59        18.71        11.97 
TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B 
       49.45        48.33        49.32        34.78        48.39        24.92 
TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84J TCGA-TM-A84L 
       16.18        59.05        40.64        30.44        24.16        40.83 
TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T 
       24.79        33.24        25.38        18.61        14.93        23.80 
TCGA-TQ-A7RH TCGA-TQ-A7RW TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB 
       15.98        26.99        43.04        30.08        13.51         0.10 
TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS 
        7.89        35.93        23.47        37.05        16.01        23.21 
TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A85A TCGA-WY-A85C TCGA-WY-A85D 
        8.05        51.06        13.32        43.40        46.88        37.71 

  AMP PEAK 21(12P13.32) MUTATED AMP PEAK 21(12P13.32) WILD-TYPE 
                           0.72                            0.03 
  AMP PEAK 21(12P13.32) MUTATED AMP PEAK 21(12P13.32) WILD-TYPE 
                         124.50                          211.17 
  AMP PEAK 21(12P13.32) MUTATED AMP PEAK 21(12P13.32) WILD-TYPE 
                         15.950                          14.665 
[1] "0.7 - 124.5 (15.9)" "0.0 - 211.2 (14.7)"
[1] "hr=" "1"  
D21V2, continuous
D21V3, binary
                                 cls
clus                                0   1
  AMP PEAK 21(12P13.32) MUTATED    84  61
  AMP PEAK 21(12P13.32) WILD-TYPE 486 411
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 21(12P13.32) MUTATED     84   61
  AMP PEAK 21(12P13.32) WILD-TYPE  486  411
                        clus
vv                       AMP PEAK 21(12P13.32) MUTATED
  BRAIN                                             84
  CENTRAL NERVOUS SYSTEM                            61
                        clus
vv                       AMP PEAK 21(12P13.32) WILD-TYPE
  BRAIN                                              486
  CENTRAL NERVOUS SYSTEM                             411
[1] 2 2
[1] FALSE
D21V4, binary
                                 cls
clus                                0   1
  AMP PEAK 21(12P13.32) MUTATED    54  91
  AMP PEAK 21(12P13.32) WILD-TYPE 376 521
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 21(12P13.32) MUTATED     54   91
  AMP PEAK 21(12P13.32) WILD-TYPE  376  521
        clus
vv       AMP PEAK 21(12P13.32) MUTATED AMP PEAK 21(12P13.32) WILD-TYPE
  FEMALE                            54                             376
  MALE                              91                             521
[1] 2 2
[1] FALSE
D21V5, continuous
                                 vv
clus                              ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  AMP PEAK 21(12P13.32) MUTATED            27                             3
  AMP PEAK 21(12P13.32) WILD-TYPE         149                            24
                                 vv
clus                              OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  AMP PEAK 21(12P13.32) MUTATED                 18                16
  AMP PEAK 21(12P13.32) WILD-TYPE              100               162
                                 vv
clus                              TREATED PRIMARY GBM
  AMP PEAK 21(12P13.32) MUTATED                     2
  AMP PEAK 21(12P13.32) WILD-TYPE                  16
                                 vv
clus                              UNTREATED PRIMARY (DE NOVO) GBM
  AMP PEAK 21(12P13.32) MUTATED                                79
  AMP PEAK 21(12P13.32) WILD-TYPE                             446
D21V6, multiclass
                                 clus
vv                                AMP PEAK 21(12P13.32) MUTATED
  ASTROCYTOMA                                                27
  GLIOBLASTOMA MULTIFORME (GBM)                               3
  OLIGOASTROCYTOMA                                           18
  OLIGODENDROGLIOMA                                          16
  TREATED PRIMARY GBM                                         2
  UNTREATED PRIMARY (DE NOVO) GBM                            79
                                 clus
vv                                AMP PEAK 21(12P13.32) WILD-TYPE
  ASTROCYTOMA                                                 149
  GLIOBLASTOMA MULTIFORME (GBM)                                24
  OLIGOASTROCYTOMA                                            100
  OLIGODENDROGLIOMA                                           162
  TREATED PRIMARY GBM                                          16
  UNTREATED PRIMARY (DE NOVO) GBM                             446
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D21V7, binary
                                 cls
clus                                0   1
  AMP PEAK 21(12P13.32) MUTATED    77  68
  AMP PEAK 21(12P13.32) WILD-TYPE 397 500
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 21(12P13.32) MUTATED     77   68
  AMP PEAK 21(12P13.32) WILD-TYPE  397  500
     clus
vv    AMP PEAK 21(12P13.32) MUTATED AMP PEAK 21(12P13.32) WILD-TYPE
  NO                             77                             397
  YES                            68                             500
[1] 2 2
[1] FALSE
                                 vv
clus                              AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK 21(12P13.32) MUTATED                                  0     4
  AMP PEAK 21(12P13.32) WILD-TYPE                                1    17
                                 vv
clus                              BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 21(12P13.32) MUTATED                           8   129
  AMP PEAK 21(12P13.32) WILD-TYPE                        56   793
D21V8, multiclass
                                  clus
vv                                 AMP PEAK 21(12P13.32) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                             0
  ASIAN                                                        4
  BLACK OR AFRICAN AMERICAN                                    8
  WHITE                                                      129
                                  clus
vv                                 AMP PEAK 21(12P13.32) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                               1
  ASIAN                                                         17
  BLACK OR AFRICAN AMERICAN                                     56
  WHITE                                                        793
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D21V9, binary
                                 cls
clus                                0   1
  AMP PEAK 21(12P13.32) MUTATED     3 122
  AMP PEAK 21(12P13.32) WILD-TYPE  27 769
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 21(12P13.32) MUTATED      3  122
  AMP PEAK 21(12P13.32) WILD-TYPE   27  769
                        clus
vv                       AMP PEAK 21(12P13.32) MUTATED
  HISPANIC OR LATINO                                 3
  NOT HISPANIC OR LATINO                           122
                        clus
vv                       AMP PEAK 21(12P13.32) WILD-TYPE
  HISPANIC OR LATINO                                  27
  NOT HISPANIC OR LATINO                             769
[1] 2 2
[1] FALSE

Clustering(22) Variable = AMP PEAK 22(12Q14.1) MUTATION ANALYSIS
D22V1, survival
                                sevent
clus2                              0   1
  AMP PEAK 22(12Q14.1) MUTATED    40 127
  AMP PEAK 22(12Q14.1) WILD-TYPE 440 432
  AMP PEAK 22(12Q14.1) MUTATED AMP PEAK 22(12Q14.1) WILD-TYPE 
                           167                            872 
  AMP PEAK 22(12Q14.1) MUTATED AMP PEAK 22(12Q14.1) WILD-TYPE 
                           127                            432 
$`AMP PEAK 22(12Q14.1) MUTATED`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0024 TCGA-02-0046 TCGA-02-0051 
       11.77         4.73        18.35        53.10         6.87        15.09 
TCGA-02-0054 TCGA-02-0060 TCGA-02-0070 TCGA-02-0074 TCGA-02-0099 TCGA-02-0102 
        6.54         6.02        25.05        10.19         3.48        27.02 
TCGA-02-0107 TCGA-02-0266 TCGA-02-0271 TCGA-02-0324 TCGA-02-0332 TCGA-02-2485 
       17.65        17.72        14.47         7.73        25.71        15.45 
TCGA-02-2486 TCGA-06-0128 TCGA-06-0129 TCGA-06-0138 TCGA-06-0145 TCGA-06-0151 
       20.32        22.72        33.67        24.23         2.33        46.59 
TCGA-06-0152 TCGA-06-0157 TCGA-06-0162 TCGA-06-0164 TCGA-06-0173 TCGA-06-0174 
       12.33         3.19         3.42        56.91         4.47         3.22 
TCGA-06-0177 TCGA-06-0182 TCGA-06-0188 TCGA-06-0192 TCGA-06-0209 TCGA-06-0214 
        4.18         3.65        44.58        38.96         7.63        15.02 
TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 TCGA-06-0238 TCGA-06-0402 TCGA-06-0409 
       24.16         0.72        19.82        13.32         0.26        72.36 
TCGA-06-0412 TCGA-06-0649 TCGA-06-0686 TCGA-06-0743 TCGA-06-0875 TCGA-06-0877 
        9.57         2.10        14.20        26.40        43.46         5.65 
TCGA-06-1086 TCGA-06-1087 TCGA-06-1805 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
        6.84         4.04        33.90        12.49         4.93        17.65 
TCGA-06-2569 TCGA-06-2570 TCGA-06-5415 TCGA-06-5856 TCGA-06-5859 TCGA-06-6390 
        0.43        31.50         8.55         3.75         4.57         5.39 
TCGA-06-6391 TCGA-06-6694 TCGA-06-6695 TCGA-06-A7TK TCGA-08-0245 TCGA-08-0246 
        1.48         7.36         8.32         5.39        37.84         4.18 
TCGA-08-0352 TCGA-08-0380 TCGA-08-0518 TCGA-12-0616 TCGA-12-0618 TCGA-12-0620 
        1.28        14.93        19.33        14.73        12.99        10.45 
TCGA-12-0657 TCGA-12-0670 TCGA-12-0691 TCGA-12-0776 TCGA-12-0778 TCGA-12-0820 
        0.10        25.97        12.13         9.73        14.93        18.48 
TCGA-12-0826 TCGA-12-1089 TCGA-12-1090 TCGA-12-1098 TCGA-12-1598 TCGA-12-1602 
       27.78         5.82         7.59         3.98        15.65         6.77 
TCGA-12-3653 TCGA-14-0790 TCGA-14-1396 TCGA-14-1450 TCGA-14-1451 TCGA-14-1821 
       14.53        13.78         1.12        58.78        23.11        17.79 
TCGA-14-1823 TCGA-14-2554 TCGA-15-1444 TCGA-15-1449 TCGA-16-0846 TCGA-16-0848 
       17.85        17.49        50.53        13.28         3.91        17.59 
TCGA-16-0850 TCGA-16-1056 TCGA-19-0957 TCGA-19-0960 TCGA-19-1786 TCGA-19-1787 
       16.37        14.01        21.90         8.61         7.17        12.66 
TCGA-19-1791 TCGA-19-2624 TCGA-19-5950 TCGA-19-5960 TCGA-26-1438 TCGA-26-5135 
        0.13         0.16        17.19        14.96        10.03         8.88 
TCGA-27-1833 TCGA-27-1835 TCGA-27-1838 TCGA-27-2518 TCGA-27-2526 TCGA-28-1746 
       24.23        21.30        11.51        24.76         2.86         0.20 
TCGA-28-2506 TCGA-28-5207 TCGA-28-5209 TCGA-28-5214 TCGA-28-5218 TCGA-32-1979 
        6.74        11.28        14.53        23.44         5.16        19.50 
TCGA-32-2615 TCGA-32-4208 TCGA-32-4211 TCGA-32-5222 TCGA-41-2571 TCGA-41-2573 
       15.95        21.14        12.59        19.23         0.85         8.94 
TCGA-41-4097 TCGA-41-5651 TCGA-74-6577 TCGA-76-4928 TCGA-76-4935 TCGA-76-6193 
        0.20        15.12         4.34         3.09        10.78         2.70 
TCGA-RR-A6KA TCGA-CS-4941 TCGA-CS-6665 TCGA-DH-A669 TCGA-DU-6400 TCGA-DU-6403 
        6.28         7.69        12.43        30.21         1.22        11.64 
TCGA-DU-7010 TCGA-DU-7013 TCGA-DU-7298 TCGA-DU-8165 TCGA-DU-A5TT TCGA-DU-A5TY 
       14.99         8.84        18.94        19.13         4.96        12.20 
TCGA-DU-A7TA TCGA-E1-5305 TCGA-E1-5318 TCGA-E1-A7YV TCGA-FG-7634 TCGA-FG-7636 
       77.88        79.99        78.21        32.45        15.35        17.88 
TCGA-FG-A6J3 TCGA-FG-A70Z TCGA-HT-8563 TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A61B 
       22.26        10.78        28.27         5.33         2.70        17.52 
TCGA-IK-7675 TCGA-P5-A5EZ TCGA-P5-A72U TCGA-QH-A6CV TCGA-S9-A6UA TCGA-S9-A7IZ 
       19.00         2.30         0.16        14.53         5.85         7.13 
TCGA-S9-A7R2 TCGA-TM-A7C3 TCGA-TM-A84B TCGA-TM-A84I TCGA-VW-A8FI 
       10.39        49.45        24.92        28.08         8.05 

$`AMP PEAK 22(12Q14.1) WILD-TYPE`
TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 
       23.18        10.59        35.41        20.71        82.59        20.61 
TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 
       87.06        77.65        20.12        42.74        24.59        12.16 
TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 
       90.58         2.83        14.14         3.62        10.72        10.52 
TCGA-02-0043 TCGA-02-0047 TCGA-02-0048 TCGA-02-0052 TCGA-02-0055 TCGA-02-0057 
       18.31        14.73         3.22        12.59         2.50        19.86 
TCGA-02-0058 TCGA-02-0059 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 TCGA-02-0071 
        8.35         9.57        19.73        26.43        28.70         5.49 
TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 
       20.84        27.25        89.72        22.72        12.62        51.32 
TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0104 TCGA-02-0106 TCGA-02-0111 
        8.81        57.76        16.96        65.00        11.67        23.18 
TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 
       92.65        99.98        15.65        48.95        16.54        16.93 
TCGA-02-0269 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 
       10.75         3.98        13.87        14.20        15.95        12.23 
TCGA-02-0321 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0333 TCGA-02-0337 
        9.90        10.62         7.33        15.91         4.37        25.12 
TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 
       10.59        12.39        14.50        10.55        47.11        11.34 
TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 
        9.27        16.21         3.35        16.80        12.92        15.32 
TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 
        2.70         6.15        20.38        47.61         6.94         3.98 
TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0139 TCGA-06-0140 
       12.95        25.35        14.30        26.70        11.90         0.20 
TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 
       10.29         2.20        11.74        20.09        17.79        10.09 
TCGA-06-0149 TCGA-06-0150 TCGA-06-0154 TCGA-06-0155 TCGA-06-0158 TCGA-06-0159 
        8.61        19.46        13.94        10.45        10.82         9.44 
TCGA-06-0160 TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 
       11.80        10.65         5.85        19.66         3.29        13.12 
TCGA-06-0175 TCGA-06-0176 TCGA-06-0178 TCGA-06-0179 TCGA-06-0184 TCGA-06-0185 
        4.04        91.00        88.14        20.25        69.90        73.84 
TCGA-06-0187 TCGA-06-0189 TCGA-06-0190 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 
       27.22        15.42        10.42         4.67         7.40         5.56 
TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 
        0.39         7.66         8.42         7.40        11.84         0.53 
TCGA-06-0237 TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0410 
       13.64        20.42        48.69        10.82         9.01         4.70 
TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 
        3.16        35.11        12.62         5.75         5.75         9.80 
TCGA-06-0650 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 
       23.57        46.88         7.86         2.70         2.70         0.92 
TCGA-06-0876 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
       46.19         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1084 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1806 
       23.93        26.79        11.84        15.32        13.61        15.32 
TCGA-06-2557 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 
        1.08        12.56        30.64         5.95        16.64         5.98 
TCGA-06-2567 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
        4.37        11.74         3.55         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5416 TCGA-06-5418 TCGA-06-5858 TCGA-06-6388 TCGA-06-6389 
        8.98         6.71         2.73         6.15         5.23         7.79 
TCGA-06-6693 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
      120.56        12.85         4.77         1.55         4.77         4.96 
TCGA-06-A5U0 TCGA-06-A5U1 TCGA-06-A6S0 TCGA-06-A6S1 TCGA-06-A7TL TCGA-08-0244 
        4.70         1.87         3.12         2.56         5.42        22.68 
TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 
      115.86         1.74         8.42        25.71        12.16         9.80 
TCGA-08-0350 TCGA-08-0351 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 
       29.23        65.33         8.42        17.95        24.56        31.10 
TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0386 TCGA-08-0389 
       37.58        22.29         3.39        12.23        18.02        15.35 
TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 
       13.97         0.72        12.56         4.27        42.15        11.08 
TCGA-08-0516 TCGA-08-0517 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 
       19.59        58.68        10.75         4.80         7.27        15.98 
TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 TCGA-12-0619 TCGA-12-0654 TCGA-12-0656 
       18.41         7.56        15.35        34.92         7.59        94.78 
TCGA-12-0662 TCGA-12-0688 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 
       38.17        26.66         3.65        20.38        28.41        15.06 
TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 
       53.85        43.23         7.63        14.86        91.76        24.79 
TCGA-12-0821 TCGA-12-0822 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 
       10.62        23.51        38.76         8.94        20.58       127.59 
TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 
       33.21        21.73        15.98        12.23        15.85         9.11 
TCGA-12-1097 TCGA-12-1099 TCGA-12-1599 TCGA-12-1600 TCGA-12-3644 TCGA-12-3646 
       14.53         4.14        25.68        14.73        59.77        44.02 
TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-5295 
       26.93        15.22        10.95        12.69        34.92        14.93 
TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 
        3.22         2.04        15.12        11.97         0.95         6.21 
TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 
       23.05         2.24        11.24         3.25         1.35         5.39 
TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 TCGA-14-0867 TCGA-14-0871 TCGA-14-1034 
        2.89        16.50        26.33         2.04        28.93        15.95 
TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1401 TCGA-14-1402 TCGA-14-1452 
       19.30         0.79         1.38         3.75        32.05         7.10 
TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 
        1.15        30.18         0.92        40.96         6.67        12.43 
TCGA-14-1794 TCGA-14-1795 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2555 
        0.99         1.97         7.63         5.88         7.17         7.96 
TCGA-14-3477 TCGA-14-4157 TCGA-15-0742 TCGA-15-1446 TCGA-15-1447 TCGA-16-0849 
        3.78         3.42        13.78        19.10        53.19        26.07 
TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1060 TCGA-16-1062 
        4.31        29.03         4.57        10.29         9.14        21.24 
TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 
       13.97         6.41        11.77         0.66        14.27         3.39 
TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 TCGA-19-1390 
       10.75         9.07         5.95        12.95         4.64        25.38 
TCGA-19-1392 TCGA-19-1789 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 
        3.65         3.25         9.67         4.87         1.08         7.53 
TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5951 
        4.08        24.23         7.00         7.04         6.64         8.02 
TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 
       18.90         4.73        12.10         1.78        22.49        14.07 
TCGA-19-5959 TCGA-19-A60I TCGA-19-A6J4 TCGA-19-A6J5 TCGA-26-1439 TCGA-26-1440 
       16.80        17.79         3.98        28.54        13.87         9.73 
TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 
       31.33         7.13         9.37         9.40        14.86         5.49 
TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-26-A7UX TCGA-27-1830 
       18.97         1.58         7.92         2.33        19.33         5.06 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1834 TCGA-27-1836 TCGA-27-1837 TCGA-27-2519 
       16.60         9.86        40.54        30.05        14.04        10.39 
TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 
       10.39        16.08         7.59        14.40        15.78         2.53 
TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 
        9.21         8.35         7.63         8.48         1.22         1.55 
TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 
        2.83         0.13         0.66         4.77         7.30         5.26 
TCGA-28-5204 TCGA-28-5208 TCGA-28-5211 TCGA-28-5213 TCGA-28-5215 TCGA-28-5216 
       14.93        17.88        11.77        31.27        11.01        13.64 
TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 
       22.68        12.76         5.42        15.39        21.07         0.49 
TCGA-32-1977 TCGA-32-1978 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 
        0.10        15.85         1.18         4.67        12.69        14.86 
TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2616 TCGA-32-2632 
       16.93        12.23        20.78        15.02         7.36         8.84 
TCGA-32-2634 TCGA-32-2638 TCGA-32-4210 TCGA-32-4213 TCGA-32-4719 TCGA-41-2572 
       22.78        25.18         3.72        19.86        10.85        13.35 
TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-6646 TCGA-4W-AA9S 
        9.53         0.99         4.44        11.84        12.46         4.14 
TCGA-4W-AA9T TCGA-74-6573 TCGA-74-6575 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 
       14.76         3.45        20.91        14.33         8.22         7.50 
TCGA-76-4925 TCGA-76-4926 TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 TCGA-76-6191 
        4.80         4.54         3.65         9.17         2.53        16.70 
TCGA-76-6192 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 
        3.29        11.38        17.06         8.35        20.98         4.83 
TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 
        5.03         0.23         9.27         7.73         7.79         1.61 
TCGA-81-5911 TCGA-87-5896 TCGA-OX-A56R TCGA-RR-A6KC TCGA-CS-4938 TCGA-CS-4942 
       17.72        26.30         5.92        20.55         4.70        43.89 
TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 
       18.15        10.62        64.64        40.18         0.10        21.01 
TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6666 
        9.96         6.38        17.69        23.84        17.95         8.48 
TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 
        7.56         8.02         7.40         6.61       122.73        81.96 
TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 
       75.25        47.93        72.92        50.86        50.17        44.52 
TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC 
       36.56        78.28        46.42        18.84        30.21        46.72 
TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L 
       39.78        37.45        33.57        72.95        31.63        24.20 
TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U 
       25.48        30.12         5.98        31.40        27.45        27.81 
TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M 
       29.23        14.40        18.51        12.10        11.24        17.88 
TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 
       30.74        16.18        19.96        31.82        30.31        14.40 
TCGA-DH-5144 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR 
        8.02        42.05        27.81        17.19        17.19        54.25 
TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 
       13.12        13.38         3.45        18.61        18.02        14.56 
TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 
       17.46         6.74        13.38         8.45         6.81       182.33 
TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 
       18.94        17.49        15.16       211.17        52.11        22.42 
TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6401 TCGA-DU-6402 
       49.02        75.16        46.06        65.75        87.45         7.04 
TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 
      133.74        19.89        16.83        94.52       114.08         7.96 
TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7011 
        7.73        11.47        62.96       156.23       138.28       105.21 
TCGA-DU-7012 TCGA-DU-7014 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 
        6.54       117.40        90.77        30.67        26.30        10.36 
TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 
        7.96        94.32        44.02        62.01        25.91        60.30 
TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 
       23.31        41.98         2.76         5.10        23.74        14.60 
TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP 
       20.68        21.40        16.96        15.48        14.17        14.24 
TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A6S2 TCGA-DU-A6S3 
       12.59        15.12         3.65         5.65         8.65         2.70 
TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O 
       77.98         7.23         5.98        11.41        26.76         7.13 
TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD 
       21.30        17.98       124.50        42.31        23.51         7.50 
TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5307 
       44.42         0.56        50.14        67.46        41.13        57.93 
TCGA-E1-5311 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YO TCGA-E1-A7YW TCGA-E1-A7Z6 
      134.27        95.57       130.78        75.02        36.82        32.35 
TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 
       14.33         0.23         0.20        47.77        25.48        34.36 
TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 
       36.82        18.77        14.93        24.99        23.97        18.44 
TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 
       22.55        20.61        20.09        12.95        13.68        14.24 
TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT 
       16.01        20.09        14.96        22.52        32.61        38.27 
TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K 
       10.72        18.38        18.71        23.70        14.76        17.82 
TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A70Y TCGA-FG-A710 TCGA-FG-A711 
       16.41        15.02        16.44        28.54        36.66        48.69 
TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 
       20.45        13.58         5.72        27.52         0.10         6.67 
TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 
       11.54        40.11         0.13         0.03        16.54         3.75 
TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 
       17.42         6.54        24.26         6.38        40.34        75.19 
TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 
       95.93       106.95       172.77         4.01         5.03        29.85 
TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 
       23.18       122.47         4.57        17.29         3.16        22.06 
TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 
       45.99        56.09        57.60         0.23        14.27         0.16 
TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 
       16.24         0.76        44.68         6.05        42.74         0.10 
TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 
       31.69        14.96         0.10         0.10         2.96        17.52 
TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 
        6.90        14.53        39.48        19.23        39.09         0.23 
TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 
       50.63         0.49        23.61        37.15         0.33         0.13 
TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 
        3.68         5.33        35.47         3.72        11.28        31.43 
TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 
        1.64        16.24         9.40        63.55         0.10        37.87 
TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 
       33.01        12.23         6.25         0.10         0.46         2.50 
TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8564 
        5.56        13.78         0.23        29.59        34.19        15.72 
TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA 
        0.23        26.04         0.13        20.22         0.07        27.35 
TCGA-HT-A5RB TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 
        0.10        16.93         1.81        16.14        16.83        21.40 
TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O 
       17.65         2.43        10.52        15.35        11.05         0.10 
TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7493 
       29.92        19.89         8.32        19.23        40.18        35.90 
TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ 
        4.31        21.70        21.60        19.59        17.82        20.35 
TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 
       12.76        20.81        20.71        42.77        14.40        14.40 
TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5F0 TCGA-P5-A5F1 
        0.23         6.71         1.64         2.37         4.11         5.88 
TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z 
        7.63         0.76         1.28        10.42        13.25        11.64 
TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V 
        0.20         9.01        13.61        15.16         2.53        12.62 
TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CW TCGA-QH-A6CX 
       15.85        14.04        19.33        14.83        13.61        12.23 
TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 
        2.20         9.17        10.29        14.53        16.34        16.73 
TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK 
        1.91        16.50         5.03        11.08        12.99        88.83 
TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z 
       94.03        32.65        59.38        30.87         5.46         9.90 
TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU 
       28.08         2.07        19.59        30.67        62.17        87.12 
TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 
       18.77        37.84        34.49        31.33        28.70        22.95 
TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 
       17.62        23.64        32.61        16.08        98.24        95.93 
TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI 
      106.39        69.50        72.59        80.12        32.45        84.99 
TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ 
       31.10        19.86        15.91        18.61        15.16        14.07 
TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7J0 TCGA-S9-A7J1 
       36.13         7.92        22.32        23.51        20.02         8.19 
TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ 
        2.04        17.03        15.06        13.12        28.37        13.02 
TCGA-S9-A7R1 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V 
      169.84        99.06        30.05        98.63        31.59        18.71 
TCGA-S9-A89Z TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84C 
       11.97        48.33        49.32        34.78        48.39        16.18 
TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M 
       59.05        40.64        30.44        24.16        40.83        24.79 
TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RH 
       33.24        25.38        18.61        14.93        23.80        15.98 
TCGA-TQ-A7RW TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD 
       26.99        43.04        30.08        13.51         0.10         7.89 
TCGA-VM-A8CE TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-W9-A837 
       35.93        23.47        37.05        16.01        23.21        51.06 
TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C 
       13.32        43.96        39.88        43.40        45.80        46.88 
TCGA-WY-A85D TCGA-WY-A85E 
       37.71        20.81 

  AMP PEAK 22(12Q14.1) MUTATED AMP PEAK 22(12Q14.1) WILD-TYPE 
                          0.10                           0.03 
  AMP PEAK 22(12Q14.1) MUTATED AMP PEAK 22(12Q14.1) WILD-TYPE 
                         79.99                         211.17 
  AMP PEAK 22(12Q14.1) MUTATED AMP PEAK 22(12Q14.1) WILD-TYPE 
                         12.59                          15.04 
[1] "0.1 - 80.0 (12.6)"  "0.0 - 211.2 (15.0)"
[1] "hr=" "2.1"
D22V2, continuous
D22V3, binary
                                cls
clus                               0   1
  AMP PEAK 22(12Q14.1) MUTATED   134  34
  AMP PEAK 22(12Q14.1) WILD-TYPE 436 438
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 22(12Q14.1) MUTATED    134   34
  AMP PEAK 22(12Q14.1) WILD-TYPE  436  438
                        clus
vv                       AMP PEAK 22(12Q14.1) MUTATED
  BRAIN                                           134
  CENTRAL NERVOUS SYSTEM                           34
                        clus
vv                       AMP PEAK 22(12Q14.1) WILD-TYPE
  BRAIN                                             436
  CENTRAL NERVOUS SYSTEM                            438
[1] 2 2
[1] FALSE
D22V4, binary
                                cls
clus                               0   1
  AMP PEAK 22(12Q14.1) MUTATED    73  95
  AMP PEAK 22(12Q14.1) WILD-TYPE 357 517
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 22(12Q14.1) MUTATED     73   95
  AMP PEAK 22(12Q14.1) WILD-TYPE  357  517
        clus
vv       AMP PEAK 22(12Q14.1) MUTATED AMP PEAK 22(12Q14.1) WILD-TYPE
  FEMALE                           73                            357
  MALE                             95                            517
[1] 2 2
[1] FALSE
D22V5, continuous
                                vv
clus                             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  AMP PEAK 22(12Q14.1) MUTATED            20                             5
  AMP PEAK 22(12Q14.1) WILD-TYPE         156                            22
                                vv
clus                             OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  AMP PEAK 22(12Q14.1) MUTATED                  5                 9
  AMP PEAK 22(12Q14.1) WILD-TYPE              113               169
                                vv
clus                             TREATED PRIMARY GBM
  AMP PEAK 22(12Q14.1) MUTATED                     3
  AMP PEAK 22(12Q14.1) WILD-TYPE                  15
                                vv
clus                             UNTREATED PRIMARY (DE NOVO) GBM
  AMP PEAK 22(12Q14.1) MUTATED                               126
  AMP PEAK 22(12Q14.1) WILD-TYPE                             399
D22V6, multiclass
                                 clus
vv                                AMP PEAK 22(12Q14.1) MUTATED
  ASTROCYTOMA                                               20
  GLIOBLASTOMA MULTIFORME (GBM)                              5
  OLIGOASTROCYTOMA                                           5
  OLIGODENDROGLIOMA                                          9
  TREATED PRIMARY GBM                                        3
  UNTREATED PRIMARY (DE NOVO) GBM                          126
                                 clus
vv                                AMP PEAK 22(12Q14.1) WILD-TYPE
  ASTROCYTOMA                                                156
  GLIOBLASTOMA MULTIFORME (GBM)                               22
  OLIGOASTROCYTOMA                                           113
  OLIGODENDROGLIOMA                                          169
  TREATED PRIMARY GBM                                         15
  UNTREATED PRIMARY (DE NOVO) GBM                            399
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D22V7, binary
                                cls
clus                               0   1
  AMP PEAK 22(12Q14.1) MUTATED    95  73
  AMP PEAK 22(12Q14.1) WILD-TYPE 379 495
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 22(12Q14.1) MUTATED     95   73
  AMP PEAK 22(12Q14.1) WILD-TYPE  379  495
     clus
vv    AMP PEAK 22(12Q14.1) MUTATED AMP PEAK 22(12Q14.1) WILD-TYPE
  NO                            95                            379
  YES                           73                            495
[1] 2 2
[1] FALSE
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK 22(12Q14.1) MUTATED                                  0     5
  AMP PEAK 22(12Q14.1) WILD-TYPE                                1    16
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 22(12Q14.1) MUTATED                          14   143
  AMP PEAK 22(12Q14.1) WILD-TYPE                        50   779
D22V8, multiclass
                                  clus
vv                                 AMP PEAK 22(12Q14.1) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            0
  ASIAN                                                       5
  BLACK OR AFRICAN AMERICAN                                  14
  WHITE                                                     143
                                  clus
vv                                 AMP PEAK 22(12Q14.1) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              1
  ASIAN                                                        16
  BLACK OR AFRICAN AMERICAN                                    50
  WHITE                                                       779
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D22V9, binary
                                cls
clus                               0   1
  AMP PEAK 22(12Q14.1) MUTATED     2 147
  AMP PEAK 22(12Q14.1) WILD-TYPE  28 744
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 22(12Q14.1) MUTATED      2  147
  AMP PEAK 22(12Q14.1) WILD-TYPE   28  744
                        clus
vv                       AMP PEAK 22(12Q14.1) MUTATED
  HISPANIC OR LATINO                                2
  NOT HISPANIC OR LATINO                          147
                        clus
vv                       AMP PEAK 22(12Q14.1) WILD-TYPE
  HISPANIC OR LATINO                                 28
  NOT HISPANIC OR LATINO                            744
[1] 2 2
[1] FALSE

Clustering(23) Variable = AMP PEAK 23(12Q15) MUTATION ANALYSIS
D23V1, survival
                              sevent
clus2                            0   1
  AMP PEAK 23(12Q15) MUTATED    23  86
  AMP PEAK 23(12Q15) WILD-TYPE 457 473
  AMP PEAK 23(12Q15) MUTATED AMP PEAK 23(12Q15) WILD-TYPE 
                         109                          930 
  AMP PEAK 23(12Q15) MUTATED AMP PEAK 23(12Q15) WILD-TYPE 
                          86                          473 
$`AMP PEAK 23(12Q15) MUTATED`
TCGA-02-0001 TCGA-02-0006 TCGA-02-0024 TCGA-02-0039 TCGA-02-0051 TCGA-02-0052 
       11.77        18.35        53.10        10.52        15.09        12.59 
TCGA-02-0054 TCGA-02-0060 TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0099 
        6.54         6.02        25.05         5.49        10.19         3.48 
TCGA-02-0102 TCGA-02-0271 TCGA-02-0321 TCGA-02-0324 TCGA-02-0330 TCGA-02-0337 
       27.02        14.47         9.90         7.73        15.91        25.12 
TCGA-06-0138 TCGA-06-0140 TCGA-06-0151 TCGA-06-0152 TCGA-06-0162 TCGA-06-0164 
       24.23         0.20        46.59        12.33         3.42        56.91 
TCGA-06-0173 TCGA-06-0174 TCGA-06-0177 TCGA-06-0182 TCGA-06-0187 TCGA-06-0188 
        4.47         3.22         4.18         3.65        27.22        44.58 
TCGA-06-0192 TCGA-06-0209 TCGA-06-0214 TCGA-06-0216 TCGA-06-0409 TCGA-06-0648 
       38.96         7.63        15.02        24.16        72.36         9.80 
TCGA-06-0686 TCGA-06-0743 TCGA-06-0877 TCGA-06-0939 TCGA-06-1086 TCGA-06-1087 
       14.20        26.40         5.65        26.76         6.84         4.04 
TCGA-06-2561 TCGA-06-2569 TCGA-06-5415 TCGA-06-5856 TCGA-06-6390 TCGA-06-6391 
       17.65         0.43         8.55         3.75         5.39         1.48 
TCGA-06-6695 TCGA-06-6700 TCGA-06-A7TK TCGA-08-0246 TCGA-12-0616 TCGA-12-0670 
        8.32         4.77         5.39         4.18        14.73        25.97 
TCGA-12-0691 TCGA-12-0772 TCGA-12-0778 TCGA-12-0826 TCGA-12-1090 TCGA-12-1098 
       12.13        53.85        14.93        27.78         7.59         3.98 
TCGA-12-1602 TCGA-12-3653 TCGA-14-0790 TCGA-14-1396 TCGA-14-1450 TCGA-14-1451 
        6.77        14.53        13.78         1.12        58.78        23.11 
TCGA-14-1821 TCGA-14-1823 TCGA-14-2554 TCGA-15-1449 TCGA-19-0957 TCGA-19-1786 
       17.79        17.85        17.49        13.28        21.90         7.17 
TCGA-19-1787 TCGA-19-2624 TCGA-26-1438 TCGA-26-5132 TCGA-26-5135 TCGA-27-2518 
       12.66         0.16        10.03         9.40         8.88        24.76 
TCGA-27-2526 TCGA-28-2506 TCGA-28-5207 TCGA-28-5214 TCGA-28-5218 TCGA-32-1978 
        2.86         6.74        11.28        23.44         5.16        15.85 
TCGA-32-1979 TCGA-32-2615 TCGA-32-4208 TCGA-32-4211 TCGA-32-5222 TCGA-41-2571 
       19.50        15.95        21.14        12.59        19.23         0.85 
TCGA-74-6577 TCGA-74-6584 TCGA-CS-4941 TCGA-DH-A669 TCGA-DU-6400 TCGA-DU-7298 
        4.34         7.50         7.69        30.21         1.22        18.94 
TCGA-DU-8165 TCGA-DU-A5TT TCGA-DU-A5TY TCGA-DU-A7TA TCGA-E1-5305 TCGA-FG-7634 
       19.13         4.96        12.20        77.88        79.99        15.35 
TCGA-FG-7636 TCGA-FG-A4MW TCGA-P5-A72U TCGA-QH-A6CV TCGA-S9-A6UA TCGA-S9-A7IZ 
       17.88        18.38         0.16        14.53         5.85         7.13 
TCGA-TM-A84B 
       24.92 

$`AMP PEAK 23(12Q15) WILD-TYPE`
TCGA-02-0003 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 TCGA-02-0011 TCGA-02-0014 
        4.73        23.18        10.59        35.41        20.71        82.59 
TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0025 TCGA-02-0026 
       20.61        87.06        77.65        20.12        42.74        24.59 
TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 
       12.16        90.58         2.83        14.14         3.62        10.72 
TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 TCGA-02-0055 TCGA-02-0057 
       18.31         6.87        14.73         3.22         2.50        19.86 
TCGA-02-0058 TCGA-02-0059 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 TCGA-02-0075 
        8.35         9.57        19.73        26.43        28.70        20.84 
TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 
       27.25        89.72        22.72        12.62        51.32         8.81 
TCGA-02-0087 TCGA-02-0089 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 
       57.76        16.96        65.00        11.67        17.65        23.18 
TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 
       92.65        99.98        15.65        48.95        16.54        16.93 
TCGA-02-0266 TCGA-02-0269 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 
       17.72        10.75         3.98        13.87        14.20        15.95 
TCGA-02-0317 TCGA-02-0325 TCGA-02-0326 TCGA-02-0332 TCGA-02-0333 TCGA-02-0338 
       12.23        10.62         7.33        25.71         4.37        10.59 
TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 
       12.39        14.50        10.55        47.11        11.34         9.27 
TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 
       16.21         3.35        16.80        12.92        15.32        15.45 
TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 
       20.32         2.70         6.15        20.38        47.61         6.94 
TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 
        3.98        22.72        33.67        12.95        25.35        14.30 
TCGA-06-0137 TCGA-06-0139 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 
       26.70        11.90        10.29         2.20        11.74         2.33 
TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0154 
       20.09        17.79        10.09         8.61        19.46        13.94 
TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0165 
       10.45         3.19        10.82         9.44        11.80        10.65 
TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0175 TCGA-06-0176 
        5.85        19.66         3.29        13.12         4.04        91.00 
TCGA-06-0178 TCGA-06-0179 TCGA-06-0184 TCGA-06-0185 TCGA-06-0189 TCGA-06-0190 
       88.14        20.25        69.90        73.84        15.42        10.42 
TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 
        4.67         7.40         5.56         0.39         7.66         8.42 
TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 
        7.40        11.84         0.53         0.72        19.82        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 
       13.32        20.42        48.69        10.82         9.01         0.26 
TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 
        4.70         9.57         3.16        35.11        12.62         5.75 
TCGA-06-0646 TCGA-06-0649 TCGA-06-0650 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 
        5.75         2.10        23.57        46.88         7.86         2.70 
TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0878 TCGA-06-0879 
        2.70         0.92        43.46        46.19         7.17        40.41 
TCGA-06-0881 TCGA-06-0882 TCGA-06-1084 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 
       16.57        20.78        23.93        26.79        11.84        15.32 
TCGA-06-1804 TCGA-06-1805 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 
       13.61        33.90        15.32         1.08        12.49         4.93 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 
       12.56        30.64         5.95        16.64         5.98         4.37 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       31.50        11.74         3.55         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5416 TCGA-06-5418 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 
        8.98         6.71         2.73         6.15         4.57         5.23 
TCGA-06-6389 TCGA-06-6693 TCGA-06-6694 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 
        7.79       120.56         7.36        12.85         4.77         1.55 
TCGA-06-6701 TCGA-06-A5U0 TCGA-06-A5U1 TCGA-06-A6S0 TCGA-06-A6S1 TCGA-06-A7TL 
        4.96         4.70         1.87         3.12         2.56         5.42 
TCGA-08-0244 TCGA-08-0245 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 
       22.68        37.84       115.86         1.74         8.42        25.71 
TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 
       12.16         9.80        29.23        65.33         1.28         8.42 
TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 
       17.95        24.56        31.10        37.58        22.29         3.39 
TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 
       12.23        14.93        18.02        15.35        13.97         0.72 
TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 
       12.56         4.27        42.15        11.08        19.59        58.68 
TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 
       19.33        10.75         4.80         7.27        15.98        18.41 
TCGA-08-0531 TCGA-12-0615 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0654 
        7.56        15.35        12.99        34.92        10.45         7.59 
TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0688 TCGA-12-0692 TCGA-12-0703 
       94.78         0.10        38.17        26.66         3.65        20.38 
TCGA-12-0707 TCGA-12-0769 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0780 
       28.41        15.06        43.23         7.63         9.73        14.86 
TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0827 
       91.76        24.79        18.48        10.62        23.51        38.76 
TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1091 TCGA-12-1092 
        8.94        20.58       127.59         5.82        33.21        21.73 
TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1099 
       15.98        12.23        15.85         9.11        14.53         4.14 
TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 
       15.65        25.68        14.73        59.77        44.02        26.93 
TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-5295 TCGA-12-5299 
       15.22        10.95        12.69        34.92        14.93         3.22 
TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 
        2.04        15.12        11.97         0.95         6.21        23.05 
TCGA-14-0787 TCGA-14-0789 TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 
        2.24        11.24         3.25         1.35         5.39         2.89 
TCGA-14-0865 TCGA-14-0866 TCGA-14-0867 TCGA-14-0871 TCGA-14-1034 TCGA-14-1037 
       16.50        26.33         2.04        28.93        15.95        19.30 
TCGA-14-1043 TCGA-14-1395 TCGA-14-1401 TCGA-14-1402 TCGA-14-1452 TCGA-14-1453 
        0.79         1.38         3.75        32.05         7.10         1.15 
TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 
       30.18         0.92        40.96         6.67        12.43         0.99 
TCGA-14-1795 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2555 TCGA-14-3477 
        1.97         7.63         5.88         7.17         7.96         3.78 
TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 TCGA-15-1447 TCGA-16-0846 
        3.42        13.78        50.53        19.10        53.19         3.91 
TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 
       17.59        26.07        16.37         4.31        29.03         4.57 
TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 
       10.29        14.01         9.14        21.24        13.97         6.41 
TCGA-19-0955 TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 
       11.77         8.61         0.66        14.27         3.39        10.75 
TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 TCGA-19-1390 TCGA-19-1392 
        9.07         5.95        12.95         4.64        25.38         3.65 
TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 
        3.25         0.13         9.67         4.87         1.08         7.53 
TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 
        4.08        24.23         7.00         7.04         6.64        17.19 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 
        8.02        18.90         4.73        12.10         1.78        22.49 
TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-19-A60I TCGA-19-A6J4 TCGA-19-A6J5 
       14.07        16.80        14.96        17.79         3.98        28.54 
TCGA-26-1439 TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5133 
       13.87         9.73        31.33         7.13         9.37        14.86 
TCGA-26-5134 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-26-A7UX 
        5.49        18.97         1.58         7.92         2.33        19.33 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 
        5.06        16.60         9.86        24.23        40.54        21.30 
TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 
       30.05        14.04        11.51        10.39        10.39        16.08 
TCGA-27-2524 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 
        7.59        14.40        15.78         0.20         2.53         9.21 
TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 
        8.35         7.63         8.48         1.22         1.55         2.83 
TCGA-28-1757 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 
        0.13         0.66         4.77         7.30         5.26        14.93 
TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5215 TCGA-28-5216 
       17.88        14.53        11.77        31.27        11.01        13.64 
TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 
       22.68        12.76         5.42        15.39        21.07         0.49 
TCGA-32-1977 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 
        0.10         1.18         4.67        12.69        14.86        16.93 
TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2616 TCGA-32-2632 TCGA-32-2634 
       12.23        20.78        15.02         7.36         8.84        22.78 
TCGA-32-2638 TCGA-32-4210 TCGA-32-4213 TCGA-32-4719 TCGA-41-2572 TCGA-41-2573 
       25.18         3.72        19.86        10.85        13.35         8.94 
TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 
        9.53         0.99         4.44        11.84         0.20        15.12 
TCGA-41-6646 TCGA-4W-AA9S TCGA-4W-AA9T TCGA-74-6573 TCGA-74-6575 TCGA-74-6578 
       12.46         4.14        14.76         3.45        20.91        14.33 
TCGA-74-6581 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 
        8.22         4.80         4.54         3.09         3.65         9.17 
TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 
        2.53        10.78        16.70         3.29         2.70        11.38 
TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 
       17.06         8.35        20.98         4.83         5.03         0.23 
TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        9.27         7.73         7.79         1.61        17.72        26.30 
TCGA-OX-A56R TCGA-RR-A6KA TCGA-RR-A6KC TCGA-CS-4938 TCGA-CS-4942 TCGA-CS-4943 
        5.92         6.28        20.55         4.70        43.89        18.15 
TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 
       10.62        64.64        40.18         0.10        21.01         9.96 
TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 
        6.38        17.69        23.84        17.95        12.43         8.48 
TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 
        7.56         8.02         7.40         6.61       122.73        81.96 
TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 
       75.25        47.93        72.92        50.86        50.17        44.52 
TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC 
       36.56        78.28        46.42        18.84        30.21        46.72 
TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L 
       39.78        37.45        33.57        72.95        31.63        24.20 
TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U 
       25.48        30.12         5.98        31.40        27.45        27.81 
TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M 
       29.23        14.40        18.51        12.10        11.24        17.88 
TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 
       30.74        16.18        19.96        31.82        30.31        14.40 
TCGA-DH-5144 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR 
        8.02        42.05        27.81        17.19        17.19        54.25 
TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 
       13.12        13.38         3.45        18.61        18.02        14.56 
TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 
       17.46         6.74        13.38         8.45         6.81       182.33 
TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 
       18.94        17.49        15.16       211.17        52.11        22.42 
TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6401 TCGA-DU-6402 
       49.02        75.16        46.06        65.75        87.45         7.04 
TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 
       11.64       133.74        19.89        16.83        94.52       114.08 
TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 
        7.96         7.73        11.47        62.96       156.23       138.28 
TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7014 TCGA-DU-7015 
       14.99       105.21         6.54         8.84       117.40        90.77 
TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7299 
       30.67        26.30        10.36         7.96        94.32        44.02 
TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 
       62.01        25.91        60.30        23.31        41.98         2.76 
TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8166 
        5.10        23.74        14.60        20.68        21.40        16.96 
TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TU 
       15.48        14.17        14.24        12.59        15.12         3.65 
TCGA-DU-A5TW TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 
        5.65         8.65         2.70        77.98         7.23         5.98 
TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 
       11.41        26.76         7.13        21.30        17.98       124.50 
TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 
       42.31        23.51         7.50        44.42         0.56        50.14 
TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 
       67.46        41.13        57.93       134.27        78.21        95.57 
TCGA-E1-5322 TCGA-E1-A7YO TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7Z6 TCGA-EZ-7264 
      130.78        75.02        32.45        36.82        32.35        14.33 
TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 
        0.23         0.20        47.77        25.48        34.36        36.82 
TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7638 
       18.77        14.93        24.99        23.97        18.44        22.55 
TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 
       20.61        20.09        12.95        13.68        14.24        16.01 
TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU 
       20.09        14.96        22.52        32.61        38.27        10.72 
TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ 
       18.71        23.70        14.76        17.82        16.41        15.02 
TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 
       16.44        22.26        28.54        10.78        36.66        48.69 
TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 
       20.45        13.58         5.72        27.52         0.10         6.67 
TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 
       11.54        40.11         0.13         0.03        16.54         3.75 
TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 
       17.42         6.54        24.26         6.38        40.34        75.19 
TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 
       95.93       106.95       172.77         4.01         5.03        29.85 
TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 
       23.18       122.47         4.57        17.29         3.16        22.06 
TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 
       45.99        56.09        57.60         0.23        14.27         0.16 
TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 
       16.24         0.76        44.68         6.05        42.74         0.10 
TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 
       31.69        14.96         0.10         0.10         2.96        17.52 
TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 
        6.90        14.53        39.48        19.23        39.09         0.23 
TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 
       50.63         0.49        23.61        37.15         0.33         0.13 
TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 
        3.68         5.33        35.47         3.72        11.28        31.43 
TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 
        1.64        16.24         9.40        63.55         0.10        37.87 
TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 
       33.01        12.23         6.25         0.10         0.46         2.50 
TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8563 
        5.56        13.78         0.23        29.59        34.19        28.27 
TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 
       15.72         0.23        26.04         0.13        20.22         0.07 
TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 
       27.35         0.10         5.33         2.70        16.93         1.81 
TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H 
       16.14        16.83        21.40        17.52        17.65         2.43 
TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 
       10.52        15.35        11.05         0.10        29.92        19.89 
TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7493 TCGA-HW-7495 TCGA-HW-8319 
        8.32        19.23        40.18        35.90         4.31        21.70 
TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL 
       21.60        19.59        17.82        20.35        12.76        20.81 
TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV 
       20.71        19.00        42.77        14.40        14.40         0.23 
TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 
        6.71         1.64         2.37         2.30         4.11         5.88 
TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z 
        7.63         0.76         1.28        10.42        13.25        11.64 
TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V 
        0.20         9.01        13.61        15.16         2.53        12.62 
TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CW TCGA-QH-A6CX 
       15.85        14.04        19.33        14.83        13.61        12.23 
TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 
        2.20         9.17        10.29        14.53        16.34        16.73 
TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK 
        1.91        16.50         5.03        11.08        12.99        88.83 
TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z 
       94.03        32.65        59.38        30.87         5.46         9.90 
TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU 
       28.08         2.07        19.59        30.67        62.17        87.12 
TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 
       18.77        37.84        34.49        31.33        28.70        22.95 
TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 
       17.62        23.64        32.61        16.08        98.24        95.93 
TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI 
      106.39        69.50        72.59        80.12        32.45        84.99 
TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ 
       31.10        19.86        15.91        18.61        15.16        14.07 
TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7J0 TCGA-S9-A7J1 
       36.13         7.92        22.32        23.51        20.02         8.19 
TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ 
        2.04        17.03        15.06        13.12        28.37        13.02 
TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 
      169.84        10.39        99.06        30.05        98.63        31.59 
TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA 
       18.71        11.97        49.45        48.33        49.32        34.78 
TCGA-TM-A7CF TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I 
       48.39        16.18        59.05        40.64        30.44        28.08 
TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R 
       24.16        40.83        24.79        33.24        25.38        18.61 
TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RH TCGA-TQ-A7RW TCGA-VM-A8C8 TCGA-VM-A8C9 
       14.93        23.80        15.98        26.99        43.04        30.08 
TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CH TCGA-VV-A829 
       13.51         0.10         7.89        35.93        23.47        37.05 
TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 
       16.01        23.21         8.05        51.06        13.32        43.96 
TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       39.88        43.40        45.80        46.88        37.71        20.81 

  AMP PEAK 23(12Q15) MUTATED AMP PEAK 23(12Q15) WILD-TYPE 
                        0.16                         0.03 
  AMP PEAK 23(12Q15) MUTATED AMP PEAK 23(12Q15) WILD-TYPE 
                       79.99                       211.17 
  AMP PEAK 23(12Q15) MUTATED AMP PEAK 23(12Q15) WILD-TYPE 
                      12.590                       14.945 
[1] "0.2 - 80.0 (12.6)"  "0.0 - 211.2 (14.9)"
[1] "hr=" "2"  
D23V2, continuous
D23V3, binary
                              cls
clus                             0   1
  AMP PEAK 23(12Q15) MUTATED    92  17
  AMP PEAK 23(12Q15) WILD-TYPE 478 455
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 23(12Q15) MUTATED     92   17
  AMP PEAK 23(12Q15) WILD-TYPE  478  455
                        clus
vv                       AMP PEAK 23(12Q15) MUTATED
  BRAIN                                          92
  CENTRAL NERVOUS SYSTEM                         17
                        clus
vv                       AMP PEAK 23(12Q15) WILD-TYPE
  BRAIN                                           478
  CENTRAL NERVOUS SYSTEM                          455
[1] 2 2
[1] FALSE
D23V4, binary
                              cls
clus                             0   1
  AMP PEAK 23(12Q15) MUTATED    38  71
  AMP PEAK 23(12Q15) WILD-TYPE 392 541
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 23(12Q15) MUTATED     38   71
  AMP PEAK 23(12Q15) WILD-TYPE  392  541
        clus
vv       AMP PEAK 23(12Q15) MUTATED AMP PEAK 23(12Q15) WILD-TYPE
  FEMALE                         38                          392
  MALE                           71                          541
[1] 2 2
[1] FALSE
D23V5, continuous
                              vv
clus                           ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  AMP PEAK 23(12Q15) MUTATED             8                             3
  AMP PEAK 23(12Q15) WILD-TYPE         168                            24
                              vv
clus                           OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  AMP PEAK 23(12Q15) MUTATED                  2                 7
  AMP PEAK 23(12Q15) WILD-TYPE              116               171
                              vv
clus                           TREATED PRIMARY GBM
  AMP PEAK 23(12Q15) MUTATED                     2
  AMP PEAK 23(12Q15) WILD-TYPE                  16
                              vv
clus                           UNTREATED PRIMARY (DE NOVO) GBM
  AMP PEAK 23(12Q15) MUTATED                                87
  AMP PEAK 23(12Q15) WILD-TYPE                             438
D23V6, multiclass
                                 clus
vv                                AMP PEAK 23(12Q15) MUTATED
  ASTROCYTOMA                                              8
  GLIOBLASTOMA MULTIFORME (GBM)                            3
  OLIGOASTROCYTOMA                                         2
  OLIGODENDROGLIOMA                                        7
  TREATED PRIMARY GBM                                      2
  UNTREATED PRIMARY (DE NOVO) GBM                         87
                                 clus
vv                                AMP PEAK 23(12Q15) WILD-TYPE
  ASTROCYTOMA                                              168
  GLIOBLASTOMA MULTIFORME (GBM)                             24
  OLIGOASTROCYTOMA                                         116
  OLIGODENDROGLIOMA                                        171
  TREATED PRIMARY GBM                                       16
  UNTREATED PRIMARY (DE NOVO) GBM                          438
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D23V7, binary
                              cls
clus                             0   1
  AMP PEAK 23(12Q15) MUTATED    60  49
  AMP PEAK 23(12Q15) WILD-TYPE 414 519
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 23(12Q15) MUTATED     60   49
  AMP PEAK 23(12Q15) WILD-TYPE  414  519
     clus
vv    AMP PEAK 23(12Q15) MUTATED AMP PEAK 23(12Q15) WILD-TYPE
  NO                          60                          414
  YES                         49                          519
[1] 2 2
[1] FALSE
                              vv
clus                           AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK 23(12Q15) MUTATED                                  0     4
  AMP PEAK 23(12Q15) WILD-TYPE                                1    17
                              vv
clus                           BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 23(12Q15) MUTATED                           7    94
  AMP PEAK 23(12Q15) WILD-TYPE                        57   828
D23V8, multiclass
                                  clus
vv                                 AMP PEAK 23(12Q15) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                          0
  ASIAN                                                     4
  BLACK OR AFRICAN AMERICAN                                 7
  WHITE                                                    94
                                  clus
vv                                 AMP PEAK 23(12Q15) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                            1
  ASIAN                                                      17
  BLACK OR AFRICAN AMERICAN                                  57
  WHITE                                                     828
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D23V9, binary
                              cls
clus                             0   1
  AMP PEAK 23(12Q15) MUTATED     0  95
  AMP PEAK 23(12Q15) WILD-TYPE  30 796
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 23(12Q15) MUTATED      0   95
  AMP PEAK 23(12Q15) WILD-TYPE   30  796
                        clus
vv                       AMP PEAK 23(12Q15) MUTATED
  HISPANIC OR LATINO                              0
  NOT HISPANIC OR LATINO                         95
                        clus
vv                       AMP PEAK 23(12Q15) WILD-TYPE
  HISPANIC OR LATINO                               30
  NOT HISPANIC OR LATINO                          796
[1] 2 2
[1] FALSE

Clustering(24) Variable = AMP PEAK 24(13Q34) MUTATION ANALYSIS
D24V1, survival
                              sevent
clus2                            0   1
  AMP PEAK 24(13Q34) MUTATED    21  31
  AMP PEAK 24(13Q34) WILD-TYPE 459 528
  AMP PEAK 24(13Q34) MUTATED AMP PEAK 24(13Q34) WILD-TYPE 
                          52                          987 
  AMP PEAK 24(13Q34) MUTATED AMP PEAK 24(13Q34) WILD-TYPE 
                          31                          528 
$`AMP PEAK 24(13Q34) MUTATED`
TCGA-02-0001 TCGA-02-0024 TCGA-02-0025 TCGA-02-0114 TCGA-02-0281 TCGA-02-0289 
       11.77        53.10        42.74        99.98         3.98        14.20 
TCGA-02-0338 TCGA-06-0146 TCGA-06-0210 TCGA-06-0221 TCGA-06-1087 TCGA-06-5856 
       10.59        20.09         7.40        19.82         4.04         3.75 
TCGA-08-0386 TCGA-12-0769 TCGA-12-1092 TCGA-12-1602 TCGA-12-3653 TCGA-14-0817 
       18.02        15.06        21.73         6.77        14.53         5.39 
TCGA-14-0871 TCGA-14-1453 TCGA-14-4157 TCGA-16-0849 TCGA-16-1063 TCGA-19-1388 
       28.93         1.15         3.42        26.07        13.97        12.95 
TCGA-19-1390 TCGA-19-1787 TCGA-19-A6J4 TCGA-28-1752 TCGA-28-5207 TCGA-32-1970 
       25.38        12.66         3.98         8.48        11.28        15.39 
TCGA-32-2615 TCGA-41-3392 TCGA-DB-5277 TCGA-DU-5853 TCGA-DU-7015 TCGA-DU-7301 
       15.95         0.99        50.86        13.38        90.77        25.91 
TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TY TCGA-HT-7476 TCGA-HT-7604 TCGA-HT-7611 
        4.96         3.65        12.20         6.54       122.47        57.60 
TCGA-HT-7688 TCGA-HT-7873 TCGA-HT-8563 TCGA-HT-A5R7 TCGA-QH-A65S TCGA-QH-A6X9 
       31.69        23.61        28.27        20.22         2.53         1.91 
TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A84T TCGA-VM-A8CA 
       11.97        49.45        23.80        13.51 

$`AMP PEAK 24(13Q34) WILD-TYPE`
TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 TCGA-02-0011 
        4.73        18.35        23.18        10.59        35.41        20.71 
TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0026 
       82.59        20.61        87.06        77.65        20.12        24.59 
TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 
       12.16        90.58         2.83        14.14         3.62        10.72 
TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 TCGA-02-0051 
       10.52        18.31         6.87        14.73         3.22        15.09 
TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 
       12.59         6.54         2.50        19.86         8.35         9.57 
TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 
        6.02        19.73        26.43        28.70        25.05         5.49 
TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 
       10.19        20.84        27.25        89.72        22.72        12.62 
TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 
       51.32         8.81        57.76        16.96         3.48        27.02 
TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 TCGA-02-0115 
       65.00        11.67        17.65        23.18        92.65        15.65 
TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 
       48.95        16.54        16.93        17.72        10.75        14.47 
TCGA-02-0285 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 
       13.87        15.95        12.23         9.90         7.73        10.62 
TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0339 
        7.33        15.91        25.71         4.37        25.12        12.39 
TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 
       14.50        10.55        47.11        11.34         9.27        16.21 
TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 
        3.35        16.80        12.92        15.32        15.45        20.32 
TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 
        2.70         6.15        20.38        47.61         6.94         3.98 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 
       22.72        33.67        12.95        25.35        14.30        26.70 
TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 
       24.23        11.90         0.20        10.29         2.20        11.74 
TCGA-06-0145 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 
        2.33        17.79        10.09         8.61        19.46        46.59 
TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 
       12.33        13.94        10.45         3.19        10.82         9.44 
TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 
       11.80         3.42        56.91        10.65         5.85        19.66 
TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 
        3.29        13.12         4.47         3.22         4.04        91.00 
TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 
        4.18        88.14        20.25         3.65        69.90        73.84 
TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 
       27.22        44.58        15.42        10.42        38.96         4.67 
TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 
        7.40         5.56         0.39         7.66         8.42         7.63 
TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
       11.84         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 
       13.32        20.42        48.69        10.82         9.01         0.26 
TCGA-06-0409 TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 
       72.36         4.70         9.57         3.16        35.11        12.62 
TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 
        5.75         5.75         9.80         2.10        23.57        14.20 
TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 
       26.40        46.88         7.86         2.70         2.70         0.92 
TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 
       43.46        46.19         5.65         7.17        40.41        16.57 
TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1800 TCGA-06-1801 
       20.78        26.76        23.93         6.84        26.79        11.84 
TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 
       15.32        13.61        33.90        15.32         1.08        12.49 
TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 
        4.93        17.65        12.56        30.64         5.95        16.64 
TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 
        5.98         4.37         0.43        31.50        11.74         3.55 
TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 
        8.35         4.54         8.81         8.98         8.55         6.71 
TCGA-06-5418 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 
        2.73         6.15         4.57         5.23         7.79         5.39 
TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 
        1.48       120.56         7.36         8.32        12.85         4.77 
TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-06-A5U0 TCGA-06-A5U1 TCGA-06-A6S0 
        1.55         4.77         4.96         4.70         1.87         3.12 
TCGA-06-A6S1 TCGA-06-A7TK TCGA-06-A7TL TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 
        2.56         5.39         5.42        22.68        37.84         4.18 
TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 
      115.86         1.74         8.42        25.71        12.16         9.80 
TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 
       29.23        65.33         1.28         8.42        17.95        24.56 
TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 
       31.10        37.58        22.29         3.39        12.23        14.93 
TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 
       15.35        13.97         0.72        12.56         4.27        42.15 
TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 
       11.08        19.59        58.68        19.33        10.75         4.80 
TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 TCGA-12-0616 
        7.27        15.98        18.41         7.56        15.35        14.73 
TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 
       12.99        34.92        10.45         7.59        94.78         0.10 
TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 
       38.17        25.97        26.66        12.13         3.65        20.38 
TCGA-12-0707 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 
       28.41        53.85        43.23         7.63         9.73        14.93 
TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 
       14.86        91.76        24.79        18.48        10.62        23.51 
TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 
       27.78        38.76         8.94        20.58       127.59         5.82 
TCGA-12-1090 TCGA-12-1091 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 
        7.59        33.21        15.98        12.23        15.85         9.11 
TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 
       14.53         3.98         4.14        15.65        25.68        14.73 
TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 
       59.77        44.02        26.93        15.22        10.95        12.69 
TCGA-12-3652 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 
       34.92        14.93         3.22         2.04        15.12        11.97 
TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 
        0.95         6.21        23.05         2.24        11.24        13.78 
TCGA-14-0812 TCGA-14-0813 TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 TCGA-14-0867 
        3.25         1.35         2.89        16.50        26.33         2.04 
TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 
       15.95        19.30         0.79         1.38         1.12         3.75 
TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1454 TCGA-14-1455 
       32.05        58.78        23.11         7.10        30.18         0.92 
TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 
       40.96         6.67        12.43         0.99         1.97        17.79 
TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 
       17.85         7.63         5.88         7.17        17.49         7.96 
TCGA-14-3477 TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 TCGA-15-1447 TCGA-15-1449 
        3.78        13.78        50.53        19.10        53.19        13.28 
TCGA-16-0846 TCGA-16-0848 TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 
        3.91        17.59        16.37         4.31        29.03         4.57 
TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1460 TCGA-19-0955 
       10.29        14.01         9.14        21.24         6.41        11.77 
TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 
       21.90         8.61         0.66        14.27         3.39        10.75 
TCGA-19-1386 TCGA-19-1387 TCGA-19-1389 TCGA-19-1392 TCGA-19-1786 TCGA-19-1789 
        9.07         5.95         4.64         3.65         7.17         3.25 
TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 
        0.13         9.67         4.87         1.08         7.53         0.16 
TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 
        4.08        24.23         7.00         7.04         6.64        17.19 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 
        8.02        18.90         4.73        12.10         1.78        22.49 
TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-19-A60I TCGA-19-A6J5 TCGA-26-1438 
       14.07        16.80        14.96        17.79        28.54        10.03 
TCGA-26-1439 TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 
       13.87         9.73        31.33         7.13         9.37         9.40 
TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 
       14.86         5.49         8.88        18.97         1.58         7.92 
TCGA-26-6174 TCGA-26-A7UX TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 
        2.33        19.33         5.06        16.60         9.86        24.23 
TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 
       40.54        21.30        30.05        14.04        11.51        24.76 
TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 
       10.39        10.39        16.08         7.59         2.86        14.40 
TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 
       15.78         0.20         2.53         9.21         8.35         7.63 
TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 
        1.22         1.55         2.83         0.13         0.66         6.74 
TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5208 TCGA-28-5209 
        4.77         7.30         5.26        14.93        17.88        14.53 
TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 
       11.77        31.27        23.44        11.01        13.64         5.16 
TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 
       22.68        12.76         5.42        21.07         0.49         0.10 
TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 
       15.85        19.50         1.18         4.67        12.69        14.86 
TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2616 TCGA-32-2632 
       16.93        12.23        20.78        15.02         7.36         8.84 
TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 
       22.78        25.18        21.14         3.72        12.59        19.86 
TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 
       10.85        19.23         0.85        13.35         8.94         9.53 
TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-4W-AA9S 
        4.44        11.84         0.20        15.12        12.46         4.14 
TCGA-4W-AA9T TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 
       14.76         3.45        20.91         4.34        14.33         8.22 
TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 
        7.50         4.80         4.54         3.09         3.65         9.17 
TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 
        2.53        10.78        16.70         3.29         2.70        11.38 
TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 
       17.06         8.35        20.98         4.83         5.03         0.23 
TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        9.27         7.73         7.79         1.61        17.72        26.30 
TCGA-OX-A56R TCGA-RR-A6KA TCGA-RR-A6KC TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 
        5.92         6.28        20.55         4.70         7.69        43.89 
TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 
       18.15        10.62        64.64        40.18         0.10        21.01 
TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 
        9.96         6.38        17.69        23.84        17.95        12.43 
TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 
        8.48         7.56         8.02         7.40         6.61       122.73 
TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5278 TCGA-DB-5279 
       81.96        75.25        47.93        72.92        50.17        44.52 
TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC 
       36.56        78.28        46.42        18.84        30.21        46.72 
TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L 
       39.78        37.45        33.57        72.95        31.63        24.20 
TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U 
       25.48        30.12         5.98        31.40        27.45        27.81 
TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M 
       29.23        14.40        18.51        12.10        11.24        17.88 
TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 
       30.74        16.18        19.96        31.82        30.31        14.40 
TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G 
        8.02        30.21        42.05        27.81        17.19        17.19 
TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 
       54.25        13.12        13.38         3.45        18.61        18.02 
TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 
       14.56        17.46         6.74         8.45         6.81       182.33 
TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 
       18.94        17.49        15.16       211.17        52.11        22.42 
TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 
       49.02        75.16        46.06        65.75         1.22        87.45 
TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 
        7.04        11.64       133.74        19.89        16.83        94.52 
TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 
      114.08         7.96         7.73        11.47        62.96       156.23 
TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7014 
      138.28        14.99       105.21         6.54         8.84       117.40 
TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 
       30.67        26.30        10.36         7.96        94.32        18.94 
TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 
       44.02        62.01        60.30        23.31        41.98         2.76 
TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 
        5.10        23.74        14.60        20.68        21.40        19.13 
TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS 
       16.96        15.48        14.17        14.24        12.59        15.12 
TCGA-DU-A5TW TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 
        5.65         8.65         2.70        77.98         7.23         5.98 
TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 
       11.41        26.76         7.13        21.30        17.98       124.50 
TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ 
       77.88        42.31        23.51         7.50        44.42         0.56 
TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 
       50.14        67.46        41.13        79.99        57.93       134.27 
TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YO TCGA-E1-A7YV TCGA-E1-A7YW 
       78.21        95.57       130.78        75.02        32.45        36.82 
TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 
       32.35        14.33         0.23         0.20        47.77        25.48 
TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 
       34.36        36.82        18.77        14.93        24.99        23.97 
TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 
       18.44        15.35        17.88        22.55        20.61        20.09 
TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 
       12.95        13.68        14.24        16.01        20.09        14.96 
TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX 
       22.52        32.61        38.27        10.72        18.38        18.71 
TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 
       23.70        14.76        17.82        16.41        15.02        16.44 
TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 
       22.26        28.54        10.78        36.66        48.69        20.45 
TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 
       13.58         5.72        27.52         0.10         6.67        11.54 
TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 
       40.11         0.13         0.03        16.54         3.75        17.42 
TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 
       24.26         6.38        40.34        75.19        95.93       106.95 
TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7605 
      172.77         4.01         5.03        29.85        23.18         4.57 
TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7616 
       17.29         3.16        22.06        45.99        56.09         0.23 
TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 
       14.27         0.16        16.24         0.76        44.68         6.05 
TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 
       42.74         0.10        14.96         0.10         0.10         2.96 
TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 
       17.52         6.90        14.53        39.48        19.23        39.09 
TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 
        0.23        50.63         0.49        37.15         0.33         0.13 
TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 
        3.68         5.33        35.47         3.72        11.28        31.43 
TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 
        1.64        16.24         9.40        63.55         0.10        37.87 
TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 
       33.01        12.23         6.25         0.10         0.46         2.50 
TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8564 
        5.56        13.78         0.23        29.59        34.19        15.72 
TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB 
        0.23        26.04         0.13         0.07        27.35         0.10 
TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 
        5.33         2.70        16.93         1.81        16.14        16.83 
TCGA-HT-A619 TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K 
       21.40        17.52        17.65         2.43        10.52        15.35 
TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 
       11.05         0.10        29.92        19.89         8.32        19.23 
TCGA-HW-7491 TCGA-HW-7493 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 
       40.18        35.90         4.31        21.70        21.60        19.59 
TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 
       17.82        20.35        12.76        20.81        20.71        19.00 
TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX 
       42.77        14.40        14.40         0.23         6.71         1.64 
TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 
        2.37         2.30         4.11         5.88         7.63         0.76 
TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 
        1.28         0.16        10.42        13.25        11.64         0.20 
TCGA-P5-A731 TCGA-P5-A733 TCGA-QH-A65R TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z 
        9.01        13.61        15.16        12.62        15.85        14.04 
TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY 
       19.33        14.83        14.53        13.61        12.23         2.20 
TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6XA 
        9.17        10.29        14.53        16.34        16.73        16.50 
TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO 
        5.03        11.08        12.99        88.83        94.03        32.65 
TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 
       59.38        30.87         5.46         9.90        28.08         2.07 
TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW 
       19.59        30.67        62.17        87.12        18.77        37.84 
TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 
       34.49        31.33        28.70        22.95        17.62        23.64 
TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB 
       32.61        16.08        98.24        95.93         5.85       106.39 
TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL 
       69.50        72.59        80.12        32.45        84.99        31.10 
TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ 
       19.86        15.91        18.61        15.16        14.07        36.13 
TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 
        7.92        22.32        23.51         7.13        20.02         8.19 
TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ 
        2.04        17.03        15.06        13.12        28.37        13.02 
TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 
      169.84        10.39        99.06        30.05        98.63        31.59 
TCGA-S9-A89V TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B 
       18.71        48.33        49.32        34.78        48.39        24.92 
TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J 
       16.18        59.05        40.64        30.44        28.08        24.16 
TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S 
       40.83        24.79        33.24        25.38        18.61        14.93 
TCGA-TQ-A7RH TCGA-TQ-A7RW TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CB TCGA-VM-A8CD 
       15.98        26.99        43.04        30.08         0.10         7.89 
TCGA-VM-A8CE TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI 
       35.93        23.47        37.05        16.01        23.21         8.05 
TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B 
       51.06        13.32        43.96        39.88        43.40        45.80 
TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       46.88        37.71        20.81 

  AMP PEAK 24(13Q34) MUTATED AMP PEAK 24(13Q34) WILD-TYPE 
                        0.99                         0.03 
  AMP PEAK 24(13Q34) MUTATED AMP PEAK 24(13Q34) WILD-TYPE 
                      122.47                       211.17 
  AMP PEAK 24(13Q34) MUTATED AMP PEAK 24(13Q34) WILD-TYPE 
                      14.085                       14.860 
[1] "1.0 - 122.5 (14.1)" "0.0 - 211.2 (14.9)"
[1] "hr=" "1.1"
D24V2, continuous
D24V3, binary
                              cls
clus                             0   1
  AMP PEAK 24(13Q34) MUTATED    32  21
  AMP PEAK 24(13Q34) WILD-TYPE 538 451
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 24(13Q34) MUTATED     32   21
  AMP PEAK 24(13Q34) WILD-TYPE  538  451
                        clus
vv                       AMP PEAK 24(13Q34) MUTATED
  BRAIN                                          32
  CENTRAL NERVOUS SYSTEM                         21
                        clus
vv                       AMP PEAK 24(13Q34) WILD-TYPE
  BRAIN                                           538
  CENTRAL NERVOUS SYSTEM                          451
[1] 2 2
[1] FALSE
D24V4, binary
                              cls
clus                             0   1
  AMP PEAK 24(13Q34) MUTATED    18  35
  AMP PEAK 24(13Q34) WILD-TYPE 412 577
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 24(13Q34) MUTATED     18   35
  AMP PEAK 24(13Q34) WILD-TYPE  412  577
        clus
vv       AMP PEAK 24(13Q34) MUTATED AMP PEAK 24(13Q34) WILD-TYPE
  FEMALE                         18                          412
  MALE                           35                          577
[1] 2 2
[1] FALSE
D24V5, continuous
                              vv
clus                           ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  AMP PEAK 24(13Q34) MUTATED            10                             1
  AMP PEAK 24(13Q34) WILD-TYPE         166                            26
                              vv
clus                           OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  AMP PEAK 24(13Q34) MUTATED                  5                 6
  AMP PEAK 24(13Q34) WILD-TYPE              113               172
                              vv
clus                           TREATED PRIMARY GBM
  AMP PEAK 24(13Q34) MUTATED                     2
  AMP PEAK 24(13Q34) WILD-TYPE                  16
                              vv
clus                           UNTREATED PRIMARY (DE NOVO) GBM
  AMP PEAK 24(13Q34) MUTATED                                29
  AMP PEAK 24(13Q34) WILD-TYPE                             496
D24V6, multiclass
                                 clus
vv                                AMP PEAK 24(13Q34) MUTATED
  ASTROCYTOMA                                             10
  GLIOBLASTOMA MULTIFORME (GBM)                            1
  OLIGOASTROCYTOMA                                         5
  OLIGODENDROGLIOMA                                        6
  TREATED PRIMARY GBM                                      2
  UNTREATED PRIMARY (DE NOVO) GBM                         29
                                 clus
vv                                AMP PEAK 24(13Q34) WILD-TYPE
  ASTROCYTOMA                                              166
  GLIOBLASTOMA MULTIFORME (GBM)                             26
  OLIGOASTROCYTOMA                                         113
  OLIGODENDROGLIOMA                                        172
  TREATED PRIMARY GBM                                       16
  UNTREATED PRIMARY (DE NOVO) GBM                          496
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D24V7, binary
                              cls
clus                             0   1
  AMP PEAK 24(13Q34) MUTATED    28  25
  AMP PEAK 24(13Q34) WILD-TYPE 446 543
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 24(13Q34) MUTATED     28   25
  AMP PEAK 24(13Q34) WILD-TYPE  446  543
     clus
vv    AMP PEAK 24(13Q34) MUTATED AMP PEAK 24(13Q34) WILD-TYPE
  NO                          28                          446
  YES                         25                          543
[1] 2 2
[1] FALSE
                              vv
clus                           AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK 24(13Q34) MUTATED                                  0     0
  AMP PEAK 24(13Q34) WILD-TYPE                                1    21
                              vv
clus                           BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 24(13Q34) MUTATED                           4    48
  AMP PEAK 24(13Q34) WILD-TYPE                        60   874
D24V8, multiclass
                                  clus
vv                                 AMP PEAK 24(13Q34) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                          0
  ASIAN                                                     0
  BLACK OR AFRICAN AMERICAN                                 4
  WHITE                                                    48
                                  clus
vv                                 AMP PEAK 24(13Q34) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                            1
  ASIAN                                                      21
  BLACK OR AFRICAN AMERICAN                                  60
  WHITE                                                     874
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D24V9, binary
                              cls
clus                             0   1
  AMP PEAK 24(13Q34) MUTATED     1  45
  AMP PEAK 24(13Q34) WILD-TYPE  29 846
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 24(13Q34) MUTATED      1   45
  AMP PEAK 24(13Q34) WILD-TYPE   29  846
                        clus
vv                       AMP PEAK 24(13Q34) MUTATED
  HISPANIC OR LATINO                              1
  NOT HISPANIC OR LATINO                         45
                        clus
vv                       AMP PEAK 24(13Q34) WILD-TYPE
  HISPANIC OR LATINO                               29
  NOT HISPANIC OR LATINO                          846
[1] 2 2
[1] FALSE

Clustering(25) Variable = AMP PEAK 25(14Q32.33) MUTATION ANALYSIS
D25V1, survival
                                 sevent
clus2                               0   1
  AMP PEAK 25(14Q32.33) MUTATED    10  34
  AMP PEAK 25(14Q32.33) WILD-TYPE 470 525
  AMP PEAK 25(14Q32.33) MUTATED AMP PEAK 25(14Q32.33) WILD-TYPE 
                             44                             995 
  AMP PEAK 25(14Q32.33) MUTATED AMP PEAK 25(14Q32.33) WILD-TYPE 
                             34                             525 
$`AMP PEAK 25(14Q32.33) MUTATED`
TCGA-02-0059 TCGA-02-0075 TCGA-02-0102 TCGA-06-0148 TCGA-06-0151 TCGA-06-0159 
        9.57        20.84        27.02        10.09        46.59         9.44 
TCGA-06-0177 TCGA-06-0195 TCGA-06-0237 TCGA-06-0397 TCGA-06-0414 TCGA-06-0747 
        4.18         7.40        13.64         9.01        35.11         2.70 
TCGA-06-1087 TCGA-06-2563 TCGA-06-2569 TCGA-06-5415 TCGA-08-0244 TCGA-08-0246 
        4.04        30.64         0.43         8.55        22.68         4.18 
TCGA-08-0351 TCGA-08-0386 TCGA-08-0510 TCGA-08-0514 TCGA-12-0619 TCGA-12-1600 
       65.33        18.02         4.27        11.08        34.92        14.73 
TCGA-12-3646 TCGA-12-3653 TCGA-14-0740 TCGA-14-0867 TCGA-16-0846 TCGA-19-0962 
       44.02        14.53        11.97         2.04         3.91         0.66 
TCGA-19-2620 TCGA-26-1439 TCGA-32-2495 TCGA-32-2632 TCGA-41-2575 TCGA-76-6286 
        4.87        13.87        15.02         8.84         9.53        20.98 
TCGA-CS-6665 TCGA-DB-5276 TCGA-DH-A669 TCGA-DU-7019 TCGA-DU-A5TS TCGA-HT-A614 
       12.43        72.92        30.21        26.30        15.12         2.70 
TCGA-S9-A6WM TCGA-TM-A84J 
       19.86        24.16 

$`AMP PEAK 25(14Q32.33) WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
       11.77         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 
       20.71        82.59        20.61        87.06        77.65        20.12 
TCGA-02-0024 TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 
       53.10        42.74        24.59        12.16        90.58         2.83 
TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 
       14.14         3.62        10.72        10.52        18.31         6.87 
TCGA-02-0047 TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 
       14.73         3.22        15.09        12.59         6.54         2.50 
TCGA-02-0057 TCGA-02-0058 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 
       19.86         8.35         6.02        19.73        26.43        28.70 
TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 
       25.05         5.49        10.19        27.25        89.72        22.72 
TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 
       12.62        51.32         8.81        57.76        16.96         3.48 
TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 TCGA-02-0114 
       65.00        11.67        17.65        23.18        92.65        99.98 
TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 
       15.65        48.95        16.54        16.93        17.72        10.75 
TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 
       14.47         3.98        13.87        14.20        15.95        12.23 
TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 
        9.90         7.73        10.62         7.33        15.91        25.71 
TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 
        4.37        25.12        10.59        12.39        14.50        10.55 
TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 
       47.11        11.34         9.27        16.21         3.35        16.80 
TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 
       12.92        15.32        15.45        20.32         2.70         6.15 
TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 
       20.38        47.61         6.94         3.98        22.72        33.67 
TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 
       12.95        25.35        14.30        26.70        24.23        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 
        0.20        10.29         2.20        11.74         2.33        20.09 
TCGA-06-0147 TCGA-06-0149 TCGA-06-0150 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 
       17.79         8.61        19.46        12.33        13.94        10.45 
TCGA-06-0157 TCGA-06-0158 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 
        3.19        10.82        11.80         3.42        56.91        10.65 
TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 
        5.85        19.66         3.29        13.12         4.47         3.22 
TCGA-06-0175 TCGA-06-0176 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 
        4.04        91.00        88.14        20.25         3.65        69.90 
TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 
       73.84        27.22        44.58        15.42        10.42        38.96 
TCGA-06-0194 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 
        4.67         5.56         0.39         7.66         8.42         7.63 
TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 
        7.40        11.84         0.53        15.02        24.16         0.72 
TCGA-06-0221 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 TCGA-06-0402 
       19.82        13.32        20.42        48.69        10.82         0.26 
TCGA-06-0409 TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 TCGA-06-0644 TCGA-06-0645 
       72.36         4.70         9.57         3.16        12.62         5.75 
TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 
        5.75         9.80         2.10        23.57        14.20        26.40 
TCGA-06-0744 TCGA-06-0745 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
       46.88         7.86         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1084 TCGA-06-1086 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 
       23.93         6.84        26.79        11.84        15.32        13.61 
TCGA-06-1805 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       33.90        15.32         1.08        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2570 
       12.56         5.95        16.64         5.98         4.37        31.50 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 
       11.74         3.55         8.35         4.54         8.81         8.98 
TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 
        6.71         2.73         3.75         6.15         4.57         5.23 
TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 
        7.79         5.39         1.48       120.56         7.36         8.32 
TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-06-A5U0 
       12.85         4.77         1.55         4.77         4.96         4.70 
TCGA-06-A5U1 TCGA-06-A6S0 TCGA-06-A6S1 TCGA-06-A7TK TCGA-06-A7TL TCGA-08-0245 
        1.87         3.12         2.56         5.39         5.42        37.84 
TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 
      115.86         1.74         8.42        25.71        12.16         9.80 
TCGA-08-0350 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 
       29.23         1.28         8.42        17.95        24.56        31.10 
TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0389 
       37.58        22.29         3.39        12.23        14.93        15.35 
TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0512 TCGA-08-0516 TCGA-08-0517 
       13.97         0.72        12.56        42.15        19.59        58.68 
TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 
       19.33        10.75         4.80         7.27        15.98        18.41 
TCGA-08-0531 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0620 TCGA-12-0654 
        7.56        15.35        14.73        12.99        10.45         7.59 
TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 
       94.78         0.10        38.17        25.97        26.66        12.13 
TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 
        3.65        20.38        28.41        15.06        53.85        43.23 
TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 
        7.63         9.73        14.93        14.86        91.76        24.79 
TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 
       18.48        10.62        23.51        27.78        38.76         8.94 
TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 
       20.58       127.59         5.82         7.59        33.21        21.73 
TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 
       15.98        12.23        15.85         9.11        14.53         3.98 
TCGA-12-1099 TCGA-12-1598 TCGA-12-1599 TCGA-12-1602 TCGA-12-3644 TCGA-12-3648 
        4.14        15.65        25.68         6.77        59.77        26.93 
TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-5295 TCGA-12-5299 
       15.22        10.95        12.69        34.92        14.93         3.22 
TCGA-12-5301 TCGA-14-0736 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 
        2.04        15.12         0.95         6.21        23.05         2.24 
TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 
       11.24        13.78         3.25         1.35         5.39         2.89 
TCGA-14-0865 TCGA-14-0866 TCGA-14-0871 TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 
       16.50        26.33        28.93        15.95        19.30         0.79 
TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 
        1.38         1.12         3.75        32.05        58.78        23.11 
TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 
        7.10         1.15        30.18         0.92        40.96         6.67 
TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 TCGA-14-1823 TCGA-14-1825 
       12.43         0.99         1.97        17.79        17.85         7.63 
TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-3477 TCGA-14-4157 
        5.88         7.17        17.49         7.96         3.78         3.42 
TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 TCGA-15-1447 TCGA-15-1449 TCGA-16-0848 
       13.78        50.53        19.10        53.19        13.28        17.59 
TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 
       26.07        16.37         4.31        29.03         4.57        10.29 
TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 
       14.01         9.14        21.24        13.97         6.41        11.77 
TCGA-19-0957 TCGA-19-0960 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 
       21.90         8.61        14.27         3.39        10.75         9.07 
TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 TCGA-19-1390 TCGA-19-1392 TCGA-19-1786 
        5.95        12.95         4.64        25.38         3.65         7.17 
TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2621 TCGA-19-2623 
       12.66         3.25         0.13         9.67         1.08         7.53 
TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 
        0.16         4.08        24.23         7.00         7.04         6.64 
TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 
       17.19         8.02        18.90         4.73        12.10         1.78 
TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-19-A60I TCGA-19-A6J4 
       22.49        14.07        16.80        14.96        17.79         3.98 
TCGA-19-A6J5 TCGA-26-1438 TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 
       28.54        10.03         9.73        31.33         7.13         9.37 
TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 
        9.40        14.86         5.49         8.88        18.97         1.58 
TCGA-26-6173 TCGA-26-6174 TCGA-26-A7UX TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 
        7.92         2.33        19.33         5.06        16.60         9.86 
TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 
       24.23        40.54        21.30        30.05        14.04        11.51 
TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 
       24.76        10.39        10.39        16.08         7.59         2.86 
TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 
       14.40        15.78         0.20         2.53         9.21         8.35 
TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 
        7.63         8.48         1.22         1.55         2.83         0.13 
TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 
        0.66         6.74         4.77         7.30         5.26        14.93 
TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 
       11.28        17.88        14.53        11.77        31.27        23.44 
TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 
       11.01        13.64         5.16        22.68        12.76         5.42 
TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 
       15.39        21.07         0.49         0.10        15.85        19.50 
TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 
        1.18         4.67        12.69        14.86        16.93        12.23 
TCGA-32-2494 TCGA-32-2615 TCGA-32-2616 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 
       20.78        15.95         7.36        22.78        25.18        21.14 
TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 
        3.72        12.59        19.86        10.85        19.23         0.85 
TCGA-41-2572 TCGA-41-2573 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 
       13.35         8.94         0.99         4.44        11.84         0.20 
TCGA-41-5651 TCGA-41-6646 TCGA-4W-AA9S TCGA-4W-AA9T TCGA-74-6573 TCGA-74-6575 
       15.12        12.46         4.14        14.76         3.45        20.91 
TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 
        4.34        14.33         8.22         7.50         4.80         4.54 
TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 
        3.09         3.65         9.17         2.53        10.78        16.70 
TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6656 
        3.29         2.70        11.38        17.06         8.35         4.83 
TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 
        5.03         0.23         9.27         7.73         7.79         1.61 
TCGA-81-5911 TCGA-87-5896 TCGA-OX-A56R TCGA-RR-A6KA TCGA-RR-A6KC TCGA-CS-4938 
       17.72        26.30         5.92         6.28        20.55         4.70 
TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 
        7.69        43.89        18.15        10.62        64.64        40.18 
TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 
        0.10        21.01         9.96         6.38        17.69        23.84 
TCGA-CS-6290 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 
       17.95         8.48         7.56         8.02         7.40         6.61 
TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5277 TCGA-DB-5278 
      122.73        81.96        75.25        47.93        50.86        50.17 
TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB 
       44.52        36.56        78.28        46.42        18.84        30.21 
TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH 
       46.72        39.78        37.45        33.57        72.95        31.63 
TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S 
       24.20        25.48        30.12         5.98        31.40        27.45 
TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L 
       27.81        29.23        14.40        18.51        12.10        11.24 
TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 
       17.88        30.74        16.18        19.96        31.82        30.31 
TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G 
       14.40         8.02        42.05        27.81        17.19        17.19 
TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 
       54.25        13.12        13.38         3.45        18.61        18.02 
TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 
       14.56        17.46         6.74        13.38         8.45         6.81 
TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 
      182.33        18.94        17.49        15.16       211.17        52.11 
TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 
       22.42        49.02        75.16        46.06        65.75         1.22 
TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 
       87.45         7.04        11.64       133.74        19.89        16.83 
TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 
       94.52       114.08         7.96         7.73        11.47        62.96 
TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 
      156.23       138.28        14.99       105.21         6.54         8.84 
TCGA-DU-7014 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 
      117.40        90.77        30.67        10.36         7.96        94.32 
TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 
       18.94        44.02        62.01        25.91        60.30        23.31 
TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 
       41.98         2.76         5.10        23.74        14.60        20.68 
TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP 
       21.40        19.13        16.96        15.48        14.17        14.24 
TCGA-DU-A5TR TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 
       12.59         4.96         3.65         5.65        12.20         8.65 
TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L 
        2.70        77.98         7.23         5.98        11.41        26.76 
TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB 
        7.13        21.30        17.98       124.50        77.88        42.31 
TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 
       23.51         7.50        44.42         0.56        50.14        67.46 
TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 
       41.13        79.99        57.93       134.27        78.21        95.57 
TCGA-E1-5322 TCGA-E1-A7YO TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7Z6 TCGA-EZ-7264 
      130.78        75.02        32.45        36.82        32.35        14.33 
TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 
        0.23         0.20        47.77        25.48        34.36        36.82 
TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 
       18.77        14.93        24.99        23.97        18.44        15.35 
TCGA-FG-7636 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 
       17.88        22.55        20.61        20.09        12.95        13.68 
TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 
       14.24        16.01        20.09        14.96        22.52        32.61 
TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J 
       38.27        10.72        18.38        18.71        23.70        14.76 
TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y 
       17.82        16.41        15.02        16.44        22.26        28.54 
TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q 
       10.78        36.66        48.69        20.45        13.58         5.72 
TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 
       27.52         0.10         6.67        11.54        40.11         0.13 
TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 
        0.03        16.54         3.75        17.42         6.54        24.26 
TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 
        6.38        40.34        75.19        95.93       106.95       172.77 
TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 
        4.01         5.03        29.85        23.18       122.47         4.57 
TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 
       17.29         3.16        22.06        45.99        56.09        57.60 
TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 
        0.23        14.27         0.16        16.24         0.76        44.68 
TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 
        6.05        42.74         0.10        31.69        14.96         0.10 
TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 
        0.10         2.96        17.52         6.90        14.53        39.48 
TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 
       19.23        39.09         0.23        50.63         0.49        23.61 
TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 
       37.15         0.33         0.13         3.68         5.33        35.47 
TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 
        3.72        11.28        31.43         1.64        16.24         9.40 
TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 
       63.55         0.10        37.87        33.01        12.23         6.25 
TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 
        0.10         0.46         2.50         5.56        13.78         0.23 
TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV 
       29.59        34.19        28.27        15.72         0.23        26.04 
TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC 
        0.13        20.22         0.07        27.35         0.10         5.33 
TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61B 
       16.93         1.81        16.14        16.83        21.40        17.52 
TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O 
       17.65         2.43        10.52        15.35        11.05         0.10 
TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7493 
       29.92        19.89         8.32        19.23        40.18        35.90 
TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ 
        4.31        21.70        21.60        19.59        17.82        20.35 
TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X 
       12.76        20.81        20.71        19.00        42.77        14.40 
TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ 
       14.40         0.23         6.71         1.64         2.37         2.30 
TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U 
        4.11         5.88         7.63         0.76         1.28         0.16 
TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 
       10.42        13.25        11.64         0.20         9.01        13.61 
TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS 
       15.16         2.53        12.62        15.85        14.04        19.33 
TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ 
       14.83        14.53        13.61        12.23         2.20         9.17 
TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA 
       10.29        14.53        16.34        16.73         1.91        16.50 
TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO 
        5.03        11.08        12.99        88.83        94.03        32.65 
TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 
       59.38        30.87         5.46         9.90        28.08         2.07 
TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW 
       19.59        30.67        62.17        87.12        18.77        37.84 
TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 
       34.49        31.33        28.70        22.95        17.62        23.64 
TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB 
       32.61        16.08        98.24        95.93         5.85       106.39 
TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL 
       69.50        72.59        80.12        32.45        84.99        31.10 
TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS 
       15.91        18.61        15.16        14.07        36.13         7.92 
TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 
       22.32        23.51         7.13        20.02         8.19         2.04 
TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 
       17.03        15.06        13.12        28.37        13.02       169.84 
TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V 
       10.39        99.06        30.05        98.63        31.59        18.71 
TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF 
       11.97        49.45        48.33        49.32        34.78        48.39 
TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I 
       24.92        16.18        59.05        40.64        30.44        28.08 
TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S 
       40.83        24.79        33.24        25.38        18.61        14.93 
TCGA-TM-A84T TCGA-TQ-A7RH TCGA-TQ-A7RW TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA 
       23.80        15.98        26.99        43.04        30.08        13.51 
TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M 
        0.10         7.89        35.93        23.47        37.05        16.01 
TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 
       23.21         8.05        51.06        13.32        43.96        39.88 
TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       43.40        45.80        46.88        37.71        20.81 

  AMP PEAK 25(14Q32.33) MUTATED AMP PEAK 25(14Q32.33) WILD-TYPE 
                           0.43                            0.03 
  AMP PEAK 25(14Q32.33) MUTATED AMP PEAK 25(14Q32.33) WILD-TYPE 
                          72.92                          211.17 
  AMP PEAK 25(14Q32.33) MUTATED AMP PEAK 25(14Q32.33) WILD-TYPE 
                         13.035                          14.860 
[1] "0.4 - 72.9 (13.0)"  "0.0 - 211.2 (14.9)"
[1] "hr=" "1.7"
D25V2, continuous
D25V3, binary
                                 cls
clus                                0   1
  AMP PEAK 25(14Q32.33) MUTATED    36   8
  AMP PEAK 25(14Q32.33) WILD-TYPE 534 464
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 25(14Q32.33) MUTATED     36    8
  AMP PEAK 25(14Q32.33) WILD-TYPE  534  464
                        clus
vv                       AMP PEAK 25(14Q32.33) MUTATED
  BRAIN                                             36
  CENTRAL NERVOUS SYSTEM                             8
                        clus
vv                       AMP PEAK 25(14Q32.33) WILD-TYPE
  BRAIN                                              534
  CENTRAL NERVOUS SYSTEM                             464
[1] 2 2
[1] FALSE
D25V4, binary
                                 cls
clus                                0   1
  AMP PEAK 25(14Q32.33) MUTATED    14  30
  AMP PEAK 25(14Q32.33) WILD-TYPE 416 582
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 25(14Q32.33) MUTATED     14   30
  AMP PEAK 25(14Q32.33) WILD-TYPE  416  582
        clus
vv       AMP PEAK 25(14Q32.33) MUTATED AMP PEAK 25(14Q32.33) WILD-TYPE
  FEMALE                            14                             416
  MALE                              30                             582
[1] 2 2
[1] FALSE
D25V5, continuous
                                 vv
clus                              ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  AMP PEAK 25(14Q32.33) MUTATED             2                             2
  AMP PEAK 25(14Q32.33) WILD-TYPE         174                            25
                                 vv
clus                              OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  AMP PEAK 25(14Q32.33) MUTATED                  3                 3
  AMP PEAK 25(14Q32.33) WILD-TYPE              115               175
                                 vv
clus                              TREATED PRIMARY GBM
  AMP PEAK 25(14Q32.33) MUTATED                     2
  AMP PEAK 25(14Q32.33) WILD-TYPE                  16
                                 vv
clus                              UNTREATED PRIMARY (DE NOVO) GBM
  AMP PEAK 25(14Q32.33) MUTATED                                32
  AMP PEAK 25(14Q32.33) WILD-TYPE                             493
D25V6, multiclass
                                 clus
vv                                AMP PEAK 25(14Q32.33) MUTATED
  ASTROCYTOMA                                                 2
  GLIOBLASTOMA MULTIFORME (GBM)                               2
  OLIGOASTROCYTOMA                                            3
  OLIGODENDROGLIOMA                                           3
  TREATED PRIMARY GBM                                         2
  UNTREATED PRIMARY (DE NOVO) GBM                            32
                                 clus
vv                                AMP PEAK 25(14Q32.33) WILD-TYPE
  ASTROCYTOMA                                                 174
  GLIOBLASTOMA MULTIFORME (GBM)                                25
  OLIGOASTROCYTOMA                                            115
  OLIGODENDROGLIOMA                                           175
  TREATED PRIMARY GBM                                          16
  UNTREATED PRIMARY (DE NOVO) GBM                             493
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D25V7, binary
                                 cls
clus                                0   1
  AMP PEAK 25(14Q32.33) MUTATED    28  16
  AMP PEAK 25(14Q32.33) WILD-TYPE 446 552
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 25(14Q32.33) MUTATED     28   16
  AMP PEAK 25(14Q32.33) WILD-TYPE  446  552
     clus
vv    AMP PEAK 25(14Q32.33) MUTATED AMP PEAK 25(14Q32.33) WILD-TYPE
  NO                             28                             446
  YES                            16                             552
[1] 2 2
[1] FALSE
                                 vv
clus                              AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK 25(14Q32.33) MUTATED                                  0     0
  AMP PEAK 25(14Q32.33) WILD-TYPE                                1    21
                                 vv
clus                              BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 25(14Q32.33) MUTATED                           3    41
  AMP PEAK 25(14Q32.33) WILD-TYPE                        61   881
D25V8, multiclass
                                  clus
vv                                 AMP PEAK 25(14Q32.33) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                             0
  ASIAN                                                        0
  BLACK OR AFRICAN AMERICAN                                    3
  WHITE                                                       41
                                  clus
vv                                 AMP PEAK 25(14Q32.33) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                               1
  ASIAN                                                         21
  BLACK OR AFRICAN AMERICAN                                     61
  WHITE                                                        881
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D25V9, binary
                                 cls
clus                                0   1
  AMP PEAK 25(14Q32.33) MUTATED     0  42
  AMP PEAK 25(14Q32.33) WILD-TYPE  30 849
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 25(14Q32.33) MUTATED      0   42
  AMP PEAK 25(14Q32.33) WILD-TYPE   30  849
                        clus
vv                       AMP PEAK 25(14Q32.33) MUTATED
  HISPANIC OR LATINO                                 0
  NOT HISPANIC OR LATINO                            42
                        clus
vv                       AMP PEAK 25(14Q32.33) WILD-TYPE
  HISPANIC OR LATINO                                  30
  NOT HISPANIC OR LATINO                             849
[1] 2 2
[1] FALSE

Clustering(26) Variable = AMP PEAK 26(17P13.2) MUTATION ANALYSIS
D26V1, survival
                                sevent
clus2                              0   1
  AMP PEAK 26(17P13.2) MUTATED    22  50
  AMP PEAK 26(17P13.2) WILD-TYPE 458 509
  AMP PEAK 26(17P13.2) MUTATED AMP PEAK 26(17P13.2) WILD-TYPE 
                            72                            967 
  AMP PEAK 26(17P13.2) MUTATED AMP PEAK 26(17P13.2) WILD-TYPE 
                            50                            509 
$`AMP PEAK 26(17P13.2) MUTATED`
TCGA-02-0051 TCGA-02-0266 TCGA-02-0281 TCGA-02-2466 TCGA-06-0151 TCGA-06-0166 
       15.09        17.72         3.98        16.80        46.59         5.85 
TCGA-06-0173 TCGA-06-0195 TCGA-06-0216 TCGA-06-0409 TCGA-06-0414 TCGA-06-0686 
        4.47         7.40        24.16        72.36        35.11        14.20 
TCGA-06-0743 TCGA-06-1087 TCGA-06-1801 TCGA-06-2557 TCGA-06-A5U1 TCGA-08-0347 
       26.40         4.04        11.84         1.08         1.87        25.71 
TCGA-08-0348 TCGA-08-0350 TCGA-08-0351 TCGA-08-0353 TCGA-08-0355 TCGA-08-0356 
       12.16        29.23        65.33         8.42        24.56        31.10 
TCGA-08-0375 TCGA-08-0389 TCGA-08-0392 TCGA-08-0510 TCGA-12-0821 TCGA-12-0822 
       12.23        15.35         0.72         4.27        10.62        23.51 
TCGA-12-0827 TCGA-12-1096 TCGA-12-1600 TCGA-12-1602 TCGA-14-0813 TCGA-14-0865 
       38.76         9.11        14.73         6.77         1.35        16.50 
TCGA-15-1447 TCGA-16-0849 TCGA-19-1388 TCGA-19-1390 TCGA-19-A6J4 TCGA-27-2521 
       53.19        26.07        12.95        25.38         3.98        10.39 
TCGA-28-1746 TCGA-28-2506 TCGA-28-5207 TCGA-28-5218 TCGA-32-2615 TCGA-32-4210 
        0.20         6.74        11.28         5.16        15.95         3.72 
TCGA-41-2575 TCGA-41-4097 TCGA-RR-A6KA TCGA-CS-6665 TCGA-CS-6668 TCGA-DB-A64R 
        9.53         0.20         6.28        12.43         8.02        31.40 
TCGA-DH-A669 TCGA-DH-A66F TCGA-DU-5853 TCGA-DU-A6S7 TCGA-E1-5304 TCGA-FG-5962 
       30.21        17.19        13.38         7.23        41.13        47.77 
TCGA-FG-7634 TCGA-FG-A6J3 TCGA-HT-7468 TCGA-HT-7477 TCGA-HW-A5KJ TCGA-QH-A86X 
       15.35        22.26         6.67        24.26        20.35        11.08 
TCGA-S9-A6TS TCGA-S9-A6U1 TCGA-S9-A6WL TCGA-TM-A84M TCGA-VM-A8CA TCGA-VW-A8FI 
       62.17        17.62        31.10        24.79        13.51         8.05 

$`AMP PEAK 26(17P13.2) WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
       11.77         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 
       20.71        82.59        20.61        87.06        77.65        20.12 
TCGA-02-0024 TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 
       53.10        42.74        24.59        12.16        90.58         2.83 
TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 
       14.14         3.62        10.72        10.52        18.31         6.87 
TCGA-02-0047 TCGA-02-0048 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 
       14.73         3.22        12.59         6.54         2.50        19.86 
TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 
        8.35         9.57         6.02        19.73        26.43        28.70 
TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 
       25.05         5.49        10.19        20.84        27.25        89.72 
TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 
       22.72        12.62        51.32         8.81        57.76        16.96 
TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 
        3.48        27.02        65.00        11.67        17.65        23.18 
TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 
       92.65        99.98        15.65        48.95        16.54        16.93 
TCGA-02-0269 TCGA-02-0271 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 
       10.75        14.47        13.87        14.20        15.95        12.23 
TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 
        9.90         7.73        10.62         7.33        15.91        25.71 
TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 
        4.37        25.12        10.59        12.39        14.50        10.55 
TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2470 
       47.11        11.34         9.27        16.21         3.35        12.92 
TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 
       15.32        15.45        20.32         2.70         6.15        20.38 
TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 
       47.61         6.94         3.98        22.72        33.67        12.95 
TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 
       25.35        14.30        26.70        24.23        11.90         0.20 
TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 
       10.29         2.20        11.74         2.33        20.09        17.79 
TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 
       10.09         8.61        19.46        12.33        13.94        10.45 
TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 
        3.19        10.82         9.44        11.80         3.42        56.91 
TCGA-06-0165 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0174 TCGA-06-0175 
       10.65        19.66         3.29        13.12         3.22         4.04 
TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 
       91.00         4.18        88.14        20.25         3.65        69.90 
TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 
       73.84        27.22        44.58        15.42        10.42        38.96 
TCGA-06-0194 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 
        4.67         5.56         0.39         7.66         8.42         7.63 
TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0219 TCGA-06-0221 
        7.40        11.84         0.53        15.02         0.72        19.82 
TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 
       13.64        13.32        20.42        48.69        10.82         9.01 
TCGA-06-0402 TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 TCGA-06-0644 TCGA-06-0645 
        0.26         4.70         9.57         3.16        12.62         5.75 
TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0744 TCGA-06-0745 
        5.75         9.80         2.10        23.57        46.88         7.86 
TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 
        2.70         2.70         0.92        43.46        46.19         5.65 
TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 
        7.17        40.41        16.57        20.78        26.76        23.93 
TCGA-06-1086 TCGA-06-1800 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-1806 
        6.84        26.79        15.32        13.61        33.90        15.32 
TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 
       12.49         4.93        17.65        12.56        30.64         5.95 
TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 
       16.64         5.98         4.37         0.43        31.50        11.74 
TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 
        3.55         8.35         4.54         8.81         8.98         8.55 
TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 
        6.71         2.73         3.75         6.15         4.57         5.23 
TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 
        7.79         5.39         1.48       120.56         7.36         8.32 
TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-06-A5U0 
       12.85         4.77         1.55         4.77         4.96         4.70 
TCGA-06-A6S0 TCGA-06-A6S1 TCGA-06-A7TK TCGA-06-A7TL TCGA-08-0244 TCGA-08-0245 
        3.12         2.56         5.39         5.42        22.68        37.84 
TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0349 TCGA-08-0352 
        4.18       115.86         1.74         8.42         9.80         1.28 
TCGA-08-0354 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0380 TCGA-08-0386 
       17.95        37.58        22.29         3.39        14.93        18.02 
TCGA-08-0390 TCGA-08-0509 TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 
       13.97        12.56        42.15        11.08        19.59        58.68 
TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 
       19.33        10.75         4.80         7.27        15.98        18.41 
TCGA-08-0531 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 
        7.56        15.35        14.73        12.99        34.92        10.45 
TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 
        7.59        94.78         0.10        38.17        25.97        26.66 
TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 
       12.13         3.65        20.38        28.41        15.06        53.85 
TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 
       43.23         7.63         9.73        14.93        14.86        91.76 
TCGA-12-0819 TCGA-12-0820 TCGA-12-0826 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 
       24.79        18.48        27.78         8.94        20.58       127.59 
TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 
        5.82         7.59        33.21        21.73        15.98        12.23 
TCGA-12-1095 TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 TCGA-12-1598 TCGA-12-1599 
       15.85        14.53         3.98         4.14        15.65        25.68 
TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 
       59.77        44.02        26.93        15.22        10.95        12.69 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 
       34.92        14.53        14.93         3.22         2.04        15.12 
TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 
       11.97         0.95         6.21        23.05         2.24        11.24 
TCGA-14-0790 TCGA-14-0812 TCGA-14-0817 TCGA-14-0862 TCGA-14-0866 TCGA-14-0867 
       13.78         3.25         5.39         2.89        26.33         2.04 
TCGA-14-0871 TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 
       28.93        15.95        19.30         0.79         1.38         1.12 
TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 
        3.75        32.05        58.78        23.11         7.10         1.15 
TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 
       30.18         0.92        40.96         6.67        12.43         0.99 
TCGA-14-1795 TCGA-14-1821 TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 
        1.97        17.79        17.85         7.63         5.88         7.17 
TCGA-14-2554 TCGA-14-2555 TCGA-14-3477 TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 
       17.49         7.96         3.78         3.42        13.78        50.53 
TCGA-15-1446 TCGA-15-1449 TCGA-16-0846 TCGA-16-0848 TCGA-16-0850 TCGA-16-0861 
       19.10        13.28         3.91        17.59        16.37         4.31 
TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 
       29.03         4.57        10.29        14.01         9.14        21.24 
TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 
       13.97         6.41        11.77        21.90         8.61         0.66 
TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1389 
       14.27         3.39        10.75         9.07         5.95         4.64 
TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 
        3.65         7.17        12.66         3.25         0.13         9.67 
TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 
        4.87         1.08         7.53         0.16         4.08        24.23 
TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 
        7.00         7.04         6.64        17.19         8.02        18.90 
TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 
        4.73        12.10         1.78        22.49        14.07        16.80 
TCGA-19-5960 TCGA-19-A60I TCGA-19-A6J5 TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 
       14.96        17.79        28.54        10.03        13.87         9.73 
TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 
       31.33         7.13         9.37         9.40        14.86         5.49 
TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-26-A7UX 
        8.88        18.97         1.58         7.92         2.33        19.33 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 
        5.06        16.60         9.86        24.23        40.54        21.30 
TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2523 
       30.05        14.04        11.51        24.76        10.39        16.08 
TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1749 
        7.59         2.86        14.40        15.78         2.53         9.21 
TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 
        8.35         7.63         8.48         1.22         1.55         2.83 
TCGA-28-1757 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 
        0.13         0.66         4.77         7.30         5.26        14.93 
TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 
       17.88        14.53        11.77        31.27        23.44        11.01 
TCGA-28-5216 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 
       13.64        22.68        12.76         5.42        15.39        21.07 
TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 
        0.49         0.10        15.85        19.50         1.18         4.67 
TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 
       12.69        14.86        16.93        12.23        20.78        15.02 
TCGA-32-2616 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4211 
        7.36         8.84        22.78        25.18        21.14        12.59 
TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 
       19.86        10.85        19.23         0.85        13.35         8.94 
TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-5651 TCGA-41-6646 TCGA-4W-AA9S 
        0.99         4.44        11.84        15.12        12.46         4.14 
TCGA-4W-AA9T TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 
       14.76         3.45        20.91         4.34        14.33         8.22 
TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 
        7.50         4.80         4.54         3.09         3.65         9.17 
TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 
        2.53        10.78        16.70         3.29         2.70        11.38 
TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 
       17.06         8.35        20.98         4.83         5.03         0.23 
TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        9.27         7.73         7.79         1.61        17.72        26.30 
TCGA-OX-A56R TCGA-RR-A6KC TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 
        5.92        20.55         4.70         7.69        43.89        18.15 
TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 
       10.62        64.64        40.18         0.10        21.01         9.96 
TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6666 TCGA-CS-6667 
        6.38        17.69        23.84        17.95         8.48         7.56 
TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 
        7.40         6.61       122.73        81.96        75.25        47.93 
TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 
       72.92        50.86        50.17        44.52        36.56        78.28 
TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE 
       46.42        18.84        30.21        46.72        39.78        37.45 
TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P 
       33.57        72.95        31.63        24.20        25.48        30.12 
TCGA-DB-A64Q TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X 
        5.98        27.45        27.81        29.23        14.40        18.51 
TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 
       12.10        11.24        17.88        30.74        16.18        19.96 
TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A66B TCGA-DH-A66D 
       31.82        30.31        14.40         8.02        42.05        27.81 
TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV 
       17.19        54.25        13.12        13.38         3.45        18.61 
TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5854 TCGA-DU-5855 
       18.02        14.56        17.46         6.74         8.45         6.81 
TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 
      182.33        18.94        17.49        15.16       211.17        52.11 
TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 
       22.42        49.02        75.16        46.06        65.75         1.22 
TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 
       87.45         7.04        11.64       133.74        19.89        16.83 
TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 
       94.52       114.08         7.96         7.73        11.47        62.96 
TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 
      156.23       138.28        14.99       105.21         6.54         8.84 
TCGA-DU-7014 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 
      117.40        90.77        30.67        26.30        10.36         7.96 
TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 
       94.32        18.94        44.02        62.01        25.91        60.30 
TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 
       23.31        41.98         2.76         5.10        23.74        14.60 
TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 
       20.68        21.40        19.13        16.96        15.48        14.17 
TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW 
       14.24        12.59        15.12         4.96         3.65         5.65 
TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S8 TCGA-DU-A76K 
       12.20         8.65         2.70        77.98         5.98        11.41 
TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA 
       26.76         7.13        21.30        17.98       124.50        77.88 
TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 
       42.31        23.51         7.50        44.42         0.56        50.14 
TCGA-E1-5303 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 
       67.46        79.99        57.93       134.27        78.21        95.57 
TCGA-E1-5322 TCGA-E1-A7YO TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7Z6 TCGA-EZ-7264 
      130.78        75.02        32.45        36.82        32.35        14.33 
TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 
        0.23         0.20        25.48        34.36        36.82        18.77 
TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7636 TCGA-FG-7638 
       14.93        24.99        23.97        18.44        17.88        22.55 
TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 
       20.61        20.09        12.95        13.68        14.24        16.01 
TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU 
       20.09        14.96        22.52        32.61        38.27        10.72 
TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L 
       18.38        18.71        23.70        14.76        17.82        16.41 
TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 
       15.02        16.44        28.54        10.78        36.66        48.69 
TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7469 
       20.45        13.58         5.72        27.52         0.10        11.54 
TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 
       40.11         0.13         0.03        16.54         3.75        17.42 
TCGA-HT-7476 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 
        6.54         6.38        40.34        75.19        95.93       106.95 
TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 
      172.77         4.01         5.03        29.85        23.18       122.47 
TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 
        4.57        17.29         3.16        22.06        45.99        56.09 
TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 
       57.60         0.23        14.27         0.16        16.24         0.76 
TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 
       44.68         6.05        42.74         0.10        31.69        14.96 
TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 
        0.10         0.10         2.96        17.52         6.90        14.53 
TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 
       39.48        19.23        39.09         0.23        50.63         0.49 
TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 
       23.61        37.15         0.33         0.13         3.68         5.33 
TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 
       35.47         3.72        11.28        31.43         1.64        16.24 
TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 
        9.40        63.55         0.10        37.87        33.01        12.23 
TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 
        6.25         0.10         0.46         2.50         5.56        13.78 
TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS 
        0.23        29.59        34.19        28.27        15.72         0.23 
TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB 
       26.04         0.13        20.22         0.07        27.35         0.10 
TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 
        5.33         2.70        16.93         1.81        16.14        16.83 
TCGA-HT-A619 TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K 
       21.40        17.52        17.65         2.43        10.52        15.35 
TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 
       11.05         0.10        29.92        19.89         8.32        19.23 
TCGA-HW-7491 TCGA-HW-7493 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 
       40.18        35.90         4.31        21.70        21.60        19.59 
TCGA-HW-8322 TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 
       17.82        12.76        20.81        20.71        19.00        42.77 
TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY 
       14.40        14.40         0.23         6.71         1.64         2.37 
TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 
        2.30         4.11         5.88         7.63         0.76         1.28 
TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 
        0.16        10.42        13.25        11.64         0.20         9.01 
TCGA-P5-A733 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z 
       13.61        15.16         2.53        12.62        15.85        14.04 
TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY 
       19.33        14.83        14.53        13.61        12.23         2.20 
TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 
        9.17        10.29        14.53        16.34        16.73         1.91 
TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO 
       16.50         5.03        12.99        88.83        94.03        32.65 
TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 
       59.38        30.87         5.46         9.90        28.08         2.07 
TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX 
       19.59        30.67        87.12        18.77        37.84        34.49 
TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 
       31.33        28.70        22.95        23.64        32.61        16.08 
TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE 
       98.24        95.93         5.85       106.39        69.50        72.59 
TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO 
       80.12        32.45        84.99        19.86        15.91        18.61 
TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY 
       15.16        14.07        36.13         7.92        22.32        23.51 
TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW 
        7.13        20.02         8.19         2.04        17.03        15.06 
TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 
       13.12        28.37        13.02       169.84        10.39        99.06 
TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 
       30.05        98.63        31.59        18.71        11.97        49.45 
TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C 
       48.33        49.32        34.78        48.39        24.92        16.18 
TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L 
       59.05        40.64        30.44        28.08        24.16        40.83 
TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RH 
       33.24        25.38        18.61        14.93        23.80        15.98 
TCGA-TQ-A7RW TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE 
       26.99        43.04        30.08         0.10         7.89        35.93 
TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-W9-A837 TCGA-WH-A86K 
       23.47        37.05        16.01        23.21        51.06        13.32 
TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D 
       43.96        39.88        43.40        45.80        46.88        37.71 
TCGA-WY-A85E 
       20.81 

  AMP PEAK 26(17P13.2) MUTATED AMP PEAK 26(17P13.2) WILD-TYPE 
                          0.20                           0.03 
  AMP PEAK 26(17P13.2) MUTATED AMP PEAK 26(17P13.2) WILD-TYPE 
                         72.36                         211.17 
  AMP PEAK 26(17P13.2) MUTATED AMP PEAK 26(17P13.2) WILD-TYPE 
                        13.855                         14.860 
[1] "0.2 - 72.4 (13.9)"  "0.0 - 211.2 (14.9)"
[1] "hr=" "1.5"
D26V2, continuous
D26V3, binary
                                cls
clus                               0   1
  AMP PEAK 26(17P13.2) MUTATED    51  21
  AMP PEAK 26(17P13.2) WILD-TYPE 519 451
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 26(17P13.2) MUTATED     51   21
  AMP PEAK 26(17P13.2) WILD-TYPE  519  451
                        clus
vv                       AMP PEAK 26(17P13.2) MUTATED
  BRAIN                                            51
  CENTRAL NERVOUS SYSTEM                           21
                        clus
vv                       AMP PEAK 26(17P13.2) WILD-TYPE
  BRAIN                                             519
  CENTRAL NERVOUS SYSTEM                            451
[1] 2 2
[1] FALSE
D26V4, binary
                                cls
clus                               0   1
  AMP PEAK 26(17P13.2) MUTATED    23  49
  AMP PEAK 26(17P13.2) WILD-TYPE 407 563
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 26(17P13.2) MUTATED     23   49
  AMP PEAK 26(17P13.2) WILD-TYPE  407  563
        clus
vv       AMP PEAK 26(17P13.2) MUTATED AMP PEAK 26(17P13.2) WILD-TYPE
  FEMALE                           23                            407
  MALE                             49                            563
[1] 2 2
[1] FALSE
D26V5, continuous
                                vv
clus                             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  AMP PEAK 26(17P13.2) MUTATED             9                             4
  AMP PEAK 26(17P13.2) WILD-TYPE         167                            23
                                vv
clus                             OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  AMP PEAK 26(17P13.2) MUTATED                  1                11
  AMP PEAK 26(17P13.2) WILD-TYPE              117               167
                                vv
clus                             TREATED PRIMARY GBM
  AMP PEAK 26(17P13.2) MUTATED                     1
  AMP PEAK 26(17P13.2) WILD-TYPE                  17
                                vv
clus                             UNTREATED PRIMARY (DE NOVO) GBM
  AMP PEAK 26(17P13.2) MUTATED                                46
  AMP PEAK 26(17P13.2) WILD-TYPE                             479
D26V6, multiclass
                                 clus
vv                                AMP PEAK 26(17P13.2) MUTATED
  ASTROCYTOMA                                                9
  GLIOBLASTOMA MULTIFORME (GBM)                              4
  OLIGOASTROCYTOMA                                           1
  OLIGODENDROGLIOMA                                         11
  TREATED PRIMARY GBM                                        1
  UNTREATED PRIMARY (DE NOVO) GBM                           46
                                 clus
vv                                AMP PEAK 26(17P13.2) WILD-TYPE
  ASTROCYTOMA                                                167
  GLIOBLASTOMA MULTIFORME (GBM)                               23
  OLIGOASTROCYTOMA                                           117
  OLIGODENDROGLIOMA                                          167
  TREATED PRIMARY GBM                                         17
  UNTREATED PRIMARY (DE NOVO) GBM                            479
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D26V7, binary
                                cls
clus                               0   1
  AMP PEAK 26(17P13.2) MUTATED    36  36
  AMP PEAK 26(17P13.2) WILD-TYPE 438 532
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 26(17P13.2) MUTATED     36   36
  AMP PEAK 26(17P13.2) WILD-TYPE  438  532
     clus
vv    AMP PEAK 26(17P13.2) MUTATED AMP PEAK 26(17P13.2) WILD-TYPE
  NO                            36                            438
  YES                           36                            532
[1] 2 2
[1] FALSE
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK 26(17P13.2) MUTATED                                  0     0
  AMP PEAK 26(17P13.2) WILD-TYPE                                1    21
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 26(17P13.2) MUTATED                           5    61
  AMP PEAK 26(17P13.2) WILD-TYPE                        59   861
D26V8, multiclass
                                  clus
vv                                 AMP PEAK 26(17P13.2) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            0
  ASIAN                                                       0
  BLACK OR AFRICAN AMERICAN                                   5
  WHITE                                                      61
                                  clus
vv                                 AMP PEAK 26(17P13.2) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              1
  ASIAN                                                        21
  BLACK OR AFRICAN AMERICAN                                    59
  WHITE                                                       861
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D26V9, binary
                                cls
clus                               0   1
  AMP PEAK 26(17P13.2) MUTATED     2  61
  AMP PEAK 26(17P13.2) WILD-TYPE  28 830
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 26(17P13.2) MUTATED      2   61
  AMP PEAK 26(17P13.2) WILD-TYPE   28  830
                        clus
vv                       AMP PEAK 26(17P13.2) MUTATED
  HISPANIC OR LATINO                                2
  NOT HISPANIC OR LATINO                           61
                        clus
vv                       AMP PEAK 26(17P13.2) WILD-TYPE
  HISPANIC OR LATINO                                 28
  NOT HISPANIC OR LATINO                            830
[1] 2 2
[1] FALSE

Clustering(27) Variable = AMP PEAK 27(17Q25.1) MUTATION ANALYSIS
D27V1, survival
                                sevent
clus2                              0   1
  AMP PEAK 27(17Q25.1) MUTATED    34  88
  AMP PEAK 27(17Q25.1) WILD-TYPE 446 471
  AMP PEAK 27(17Q25.1) MUTATED AMP PEAK 27(17Q25.1) WILD-TYPE 
                           122                            917 
  AMP PEAK 27(17Q25.1) MUTATED AMP PEAK 27(17Q25.1) WILD-TYPE 
                            88                            471 
$`AMP PEAK 27(17Q25.1) MUTATED`
TCGA-02-0003 TCGA-02-0047 TCGA-02-0051 TCGA-02-0104 TCGA-02-0106 TCGA-02-0266 
        4.73        14.73        15.09        65.00        11.67        17.72 
TCGA-02-0281 TCGA-02-0325 TCGA-02-0456 TCGA-02-2466 TCGA-06-0151 TCGA-06-0152 
        3.98        10.62         3.35        16.80        46.59        12.33 
TCGA-06-0166 TCGA-06-0173 TCGA-06-0188 TCGA-06-0195 TCGA-06-0216 TCGA-06-0237 
        5.85         4.47        44.58         7.40        24.16        13.64 
TCGA-06-0409 TCGA-06-0410 TCGA-06-0414 TCGA-06-0649 TCGA-06-0686 TCGA-06-0743 
       72.36         4.70        35.11         2.10        14.20        26.40 
TCGA-06-0744 TCGA-06-1084 TCGA-06-1087 TCGA-06-1801 TCGA-06-2557 TCGA-06-6694 
       46.88        23.93         4.04        11.84         1.08         7.36 
TCGA-06-6700 TCGA-06-A5U1 TCGA-08-0346 TCGA-08-0350 TCGA-08-0353 TCGA-08-0510 
        4.77         1.87         8.42        29.23         8.42         4.27 
TCGA-08-0514 TCGA-08-0531 TCGA-12-0619 TCGA-12-0662 TCGA-12-0818 TCGA-12-0821 
       11.08         7.56        34.92        38.17        91.76        10.62 
TCGA-12-0827 TCGA-12-1090 TCGA-12-1092 TCGA-12-1096 TCGA-12-1098 TCGA-12-1600 
       38.76         7.59        21.73         9.11         3.98        14.73 
TCGA-12-1602 TCGA-12-5301 TCGA-14-0813 TCGA-14-0865 TCGA-14-1453 TCGA-14-1794 
        6.77         2.04         1.35        16.50         1.15         0.99 
TCGA-14-1827 TCGA-14-1829 TCGA-14-3477 TCGA-15-1449 TCGA-16-0846 TCGA-16-1063 
        5.88         7.17         3.78        13.28         3.91        13.97 
TCGA-19-1388 TCGA-19-1390 TCGA-19-1392 TCGA-19-A60I TCGA-19-A6J4 TCGA-27-1835 
       12.95        25.38         3.65        17.79         3.98        21.30 
TCGA-27-2521 TCGA-28-1746 TCGA-28-1757 TCGA-28-2506 TCGA-28-5207 TCGA-28-5215 
       10.39         0.20         0.13         6.74        11.28        11.01 
TCGA-28-5218 TCGA-32-1991 TCGA-32-2495 TCGA-32-2615 TCGA-32-2616 TCGA-41-2575 
        5.16        16.93        15.02        15.95         7.36         9.53 
TCGA-41-3915 TCGA-41-4097 TCGA-74-6573 TCGA-76-6280 TCGA-RR-A6KA TCGA-CS-6665 
       11.84         0.20         3.45        11.38         6.28        12.43 
TCGA-DB-A4XB TCGA-DB-A4XF TCGA-DB-A64P TCGA-DB-A64Q TCGA-DH-5140 TCGA-DH-A669 
       30.21        33.57        30.12         5.98        19.96        30.21 
TCGA-DH-A66F TCGA-DU-6399 TCGA-DU-7010 TCGA-DU-7013 TCGA-DU-7304 TCGA-DU-A6S7 
       17.19        65.75        14.99         8.84        23.31         7.23 
TCGA-E1-5304 TCGA-E1-A7YO TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-7634 TCGA-FG-A60J 
       41.13        75.02         0.20        47.77        15.35        14.76 
TCGA-FG-A87Q TCGA-HT-7477 TCGA-HT-8010 TCGA-HT-A61C TCGA-IK-7675 TCGA-QH-A6CV 
        5.72        24.26         1.64        17.65        19.00        14.53 
TCGA-RY-A840 TCGA-S9-A6TS TCGA-S9-A6U1 TCGA-S9-A6UA TCGA-S9-A6WG TCGA-S9-A6WL 
       28.08        62.17        17.62         5.85        80.12        31.10 
TCGA-S9-A6WM TCGA-S9-A7J0 TCGA-TM-A84F TCGA-TM-A84H TCGA-TM-A84M TCGA-VM-A8CA 
       19.86        20.02        59.05        30.44        24.79        13.51 
TCGA-VM-A8CH TCGA-VW-A8FI 
       23.47         8.05 

$`AMP PEAK 27(17Q25.1) WILD-TYPE`
TCGA-02-0001 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 TCGA-02-0011 
       11.77        18.35        23.18        10.59        35.41        20.71 
TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 
       82.59        20.61        87.06        77.65        20.12        53.10 
TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 
       42.74        24.59        12.16        90.58         2.83        14.14 
TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0048 
        3.62        10.72        10.52        18.31         6.87         3.22 
TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 
       12.59         6.54         2.50        19.86         8.35         9.57 
TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 
        6.02        19.73        26.43        28.70        25.05         5.49 
TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 
       10.19        20.84        27.25        89.72        22.72        12.62 
TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 
       51.32         8.81        57.76        16.96         3.48        27.02 
TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 
       17.65        23.18        92.65        99.98        15.65        48.95 
TCGA-02-0258 TCGA-02-0260 TCGA-02-0269 TCGA-02-0271 TCGA-02-0285 TCGA-02-0289 
       16.54        16.93        10.75        14.47        13.87        14.20 
TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0326 TCGA-02-0330 
       15.95        12.23         9.90         7.73         7.33        15.91 
TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 
       25.71         4.37        25.12        10.59        12.39        14.50 
TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-2470 
       10.55        47.11        11.34         9.27        16.21        12.92 
TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 
       15.32        15.45        20.32         2.70         6.15        20.38 
TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 
       47.61         6.94         3.98        22.72        33.67        12.95 
TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 
       25.35        14.30        26.70        24.23        11.90         0.20 
TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 
       10.29         2.20        11.74         2.33        20.09        17.79 
TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 
       10.09         8.61        19.46        13.94        10.45         3.19 
TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 
       10.82         9.44        11.80         3.42        56.91        10.65 
TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 
       19.66         3.29        13.12         3.22         4.04        91.00 
TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 
        4.18        88.14        20.25         3.65        69.90        73.84 
TCGA-06-0187 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0197 
       27.22        15.42        10.42        38.96         4.67         5.56 
TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 
        0.39         7.66         8.42         7.63         7.40        11.84 
TCGA-06-0213 TCGA-06-0214 TCGA-06-0219 TCGA-06-0221 TCGA-06-0238 TCGA-06-0240 
        0.53        15.02         0.72        19.82        13.32        20.42 
TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0412 TCGA-06-0413 
       48.69        10.82         9.01         0.26         9.57         3.16 
TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0650 TCGA-06-0745 
       12.62         5.75         5.75         9.80        23.57         7.86 
TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 
        2.70         2.70         0.92        43.46        46.19         5.65 
TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1086 
        7.17        40.41        16.57        20.78        26.76         6.84 
TCGA-06-1800 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-1806 TCGA-06-2558 
       26.79        15.32        13.61        33.90        15.32        12.49 
TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 
        4.93        17.65        12.56        30.64         5.95        16.64 
TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 
        5.98         4.37         0.43        31.50        11.74         3.55 
TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 
        8.35         4.54         8.81         8.98         8.55         6.71 
TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 
        2.73         3.75         6.15         4.57         5.23         7.79 
TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 
        5.39         1.48       120.56         8.32        12.85         4.77 
TCGA-06-6699 TCGA-06-6701 TCGA-06-A5U0 TCGA-06-A6S0 TCGA-06-A6S1 TCGA-06-A7TK 
        1.55         4.96         4.70         3.12         2.56         5.39 
TCGA-06-A7TL TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 
        5.42        22.68        37.84         4.18       115.86         1.74 
TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0351 TCGA-08-0352 TCGA-08-0354 
       25.71        12.16         9.80        65.33         1.28        17.95 
TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 
       24.56        31.10        37.58        22.29         3.39        12.23 
TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 
       14.93        18.02        15.35        13.97         0.72        12.56 
TCGA-08-0512 TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 
       42.15        19.59        58.68        19.33        10.75         4.80 
TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 
        7.27        15.98        18.41        15.35        14.73        12.99 
TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0670 TCGA-12-0688 
       10.45         7.59        94.78         0.10        25.97        26.66 
TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 
       12.13         3.65        20.38        28.41        15.06        53.85 
TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0819 
       43.23         7.63         9.73        14.93        14.86        24.79 
TCGA-12-0820 TCGA-12-0822 TCGA-12-0826 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 
       18.48        23.51        27.78         8.94        20.58       127.59 
TCGA-12-1089 TCGA-12-1091 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1097 
        5.82        33.21        15.98        12.23        15.85        14.53 
TCGA-12-1099 TCGA-12-1598 TCGA-12-1599 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 
        4.14        15.65        25.68        59.77        44.02        26.93 
TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 
       15.22        10.95        12.69        34.92        14.53        14.93 
TCGA-12-5299 TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 
        3.22        15.12        11.97         0.95         6.21        23.05 
TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 TCGA-14-0817 TCGA-14-0862 
        2.24        11.24        13.78         3.25         5.39         2.89 
TCGA-14-0866 TCGA-14-0867 TCGA-14-0871 TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 
       26.33         2.04        28.93        15.95        19.30         0.79 
TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 
        1.38         1.12         3.75        32.05        58.78        23.11 
TCGA-14-1452 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 
        7.10        30.18         0.92        40.96         6.67        12.43 
TCGA-14-1795 TCGA-14-1821 TCGA-14-1823 TCGA-14-1825 TCGA-14-2554 TCGA-14-2555 
        1.97        17.79        17.85         7.63        17.49         7.96 
TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 TCGA-15-1447 TCGA-16-0848 
        3.42        13.78        50.53        19.10        53.19        17.59 
TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 
       26.07        16.37         4.31        29.03         4.57        10.29 
TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 
       14.01         9.14        21.24         6.41        11.77        21.90 
TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 
        8.61         0.66        14.27         3.39        10.75         9.07 
TCGA-19-1387 TCGA-19-1389 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 
        5.95         4.64         7.17        12.66         3.25         0.13 
TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 
        9.67         4.87         1.08         7.53         0.16         4.08 
TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 
       24.23         7.00         7.04         6.64        17.19         8.02 
TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 
       18.90         4.73        12.10         1.78        22.49        14.07 
TCGA-19-5959 TCGA-19-5960 TCGA-19-A6J5 TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 
       16.80        14.96        28.54        10.03        13.87         9.73 
TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 
       31.33         7.13         9.37         9.40        14.86         5.49 
TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-26-A7UX 
        8.88        18.97         1.58         7.92         2.33        19.33 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1836 
        5.06        16.60         9.86        24.23        40.54        30.05 
TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2523 TCGA-27-2524 
       14.04        11.51        24.76        10.39        16.08         7.59 
TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 
        2.86        14.40        15.78         2.53         9.21         8.35 
TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-2502 
        7.63         8.48         1.22         1.55         2.83         0.66 
TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5208 TCGA-28-5209 
        4.77         7.30         5.26        14.93        17.88        14.53 
TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5216 TCGA-28-5219 TCGA-28-5220 
       11.77        31.27        23.44        13.64        22.68        12.76 
TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 
        5.42        15.39        21.07         0.49         0.10        15.85 
TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-2491 
       19.50         1.18         4.67        12.69        14.86        12.23 
TCGA-32-2494 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4210 
       20.78         8.84        22.78        25.18        21.14         3.72 
TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 
       12.59        19.86        10.85        19.23         0.85        13.35 
TCGA-41-2573 TCGA-41-3392 TCGA-41-3393 TCGA-41-5651 TCGA-41-6646 TCGA-4W-AA9S 
        8.94         0.99         4.44        15.12        12.46         4.14 
TCGA-4W-AA9T TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 
       14.76        20.91         4.34        14.33         8.22         7.50 
TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 
        4.80         4.54         3.09         3.65         9.17         2.53 
TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6282 TCGA-76-6285 
       10.78        16.70         3.29         2.70        17.06         8.35 
TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 
       20.98         4.83         5.03         0.23         9.27         7.73 
TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 TCGA-OX-A56R TCGA-RR-A6KC 
        7.79         1.61        17.72        26.30         5.92        20.55 
TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 
        4.70         7.69        43.89        18.15        10.62        64.64 
TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 
       40.18         0.10        21.01         9.96         6.38        17.69 
TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 
       23.84        17.95         8.48         7.56         8.02         7.40 
TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 
        6.61       122.73        81.96        75.25        47.93        72.92 
TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 
       50.86        50.17        44.52        36.56        78.28        46.42 
TCGA-DB-A4XA TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XG TCGA-DB-A4XH 
       18.84        46.72        39.78        37.45        72.95        31.63 
TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V 
       24.20        25.48        31.40        27.45        27.81        29.23 
TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O 
       14.40        18.51        12.10        11.24        17.88        30.74 
TCGA-DB-A75P TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A66B 
       16.18        31.82        30.31        14.40         8.02        42.05 
TCGA-DH-A66D TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU 
       27.81        17.19        54.25        13.12        13.38         3.45 
TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 
       18.61        18.02        14.56        17.46         6.74        13.38 
TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 
        8.45         6.81       182.33        18.94        17.49        15.16 
TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 
      211.17        52.11        22.42        49.02        75.16        46.06 
TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 
        1.22        87.45         7.04        11.64       133.74        19.89 
TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 
       16.83        94.52       114.08         7.96         7.73        11.47 
TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7014 
       62.96       156.23       138.28       105.21         6.54       117.40 
TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 
       90.77        30.67        26.30        10.36         7.96        94.32 
TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7306 
       18.94        44.02        62.01        25.91        60.30        41.98 
TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 
        2.76         5.10        23.74        14.60        20.68        21.40 
TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR 
       19.13        16.96        15.48        14.17        14.24        12.59 
TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 
       15.12         4.96         3.65         5.65        12.20         8.65 
TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O 
        2.70        77.98         5.98        11.41        26.76         7.13 
TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC 
       21.30        17.98       124.50        77.88        42.31        23.51 
TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5305 
        7.50        44.42         0.56        50.14        67.46        79.99 
TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YV 
       57.93       134.27        78.21        95.57       130.78        32.45 
TCGA-E1-A7YW TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-FG-5963 TCGA-FG-5964 
       36.82        32.35        14.33         0.23        25.48        34.36 
TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 
       36.82        18.77        14.93        24.99        23.97        18.44 
TCGA-FG-7636 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 
       17.88        22.55        20.61        20.09        12.95        13.68 
TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 
       14.24        16.01        20.09        14.96        22.52        32.61 
TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60K 
       38.27        10.72        18.38        18.71        23.70        17.82 
TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z 
       16.41        15.02        16.44        22.26        28.54        10.78 
TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N TCGA-FN-7833 TCGA-HT-7467 
       36.66        48.69        20.45        13.58        27.52         0.10 
TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 
        6.67        11.54        40.11         0.13         0.03        16.54 
TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 
        3.75        17.42         6.54         6.38        40.34        75.19 
TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 
       95.93       106.95       172.77         4.01         5.03        29.85 
TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 
       23.18       122.47         4.57        17.29         3.16        22.06 
TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 
       45.99        56.09        57.60         0.23        14.27         0.16 
TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 
       16.24         0.76        44.68         6.05        42.74         0.10 
TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 
       31.69        14.96         0.10         0.10         2.96        17.52 
TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 
        6.90        14.53        39.48        19.23        39.09         0.23 
TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 
       50.63         0.49        23.61        37.15         0.33         0.13 
TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 
        3.68         5.33        35.47         3.72        11.28        31.43 
TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 
       16.24         9.40        63.55         0.10        37.87        33.01 
TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 
       12.23         6.25         0.10         0.46         2.50         5.56 
TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8563 TCGA-HT-8564 
       13.78         0.23        29.59        34.19        28.27        15.72 
TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA 
        0.23        26.04         0.13        20.22         0.07        27.35 
TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 
        0.10         5.33         2.70        16.93         1.81        16.14 
TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61B TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K 
       16.83        21.40        17.52         2.43        10.52        15.35 
TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 
       11.05         0.10        29.92        19.89         8.32        19.23 
TCGA-HW-7491 TCGA-HW-7493 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 
       40.18        35.90         4.31        21.70        21.60        19.59 
TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-8125 
       17.82        20.35        12.76        20.81        20.71        42.77 
TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY 
       14.40        14.40         0.23         6.71         1.64         2.37 
TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 
        2.30         4.11         5.88         7.63         0.76         1.28 
TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 
        0.16        10.42        13.25        11.64         0.20         9.01 
TCGA-P5-A733 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z 
       13.61        15.16         2.53        12.62        15.85        14.04 
TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ 
       19.33        14.83        13.61        12.23         2.20         9.17 
TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA 
       10.29        14.53        16.34        16.73         1.91        16.50 
TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO 
        5.03        11.08        12.99        88.83        94.03        32.65 
TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A843 TCGA-RY-A845 
       59.38        30.87         5.46         9.90         2.07        19.59 
TCGA-RY-A847 TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY 
       30.67        87.12        18.77        37.84        34.49        31.33 
TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 
       28.70        22.95        23.64        32.61        16.08        98.24 
TCGA-S9-A6U9 TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WH TCGA-S9-A6WI 
       95.93       106.39        69.50        72.59        32.45        84.99 
TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS 
       15.91        18.61        15.16        14.07        36.13         7.92 
TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 
       22.32        23.51         7.13         8.19         2.04        17.03 
TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 
       15.06        13.12        28.37        13.02       169.84        10.39 
TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z 
       99.06        30.05        98.63        31.59        18.71        11.97 
TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B 
       49.45        48.33        49.32        34.78        48.39        24.92 
TCGA-TM-A84C TCGA-TM-A84G TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84O 
       16.18        40.64        28.08        24.16        40.83        33.24 
TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RH TCGA-TQ-A7RW 
       25.38        18.61        14.93        23.80        15.98        26.99 
TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VV-A829 
       43.04        30.08         0.10         7.89        35.93        37.05 
TCGA-VV-A86M TCGA-VW-A7QS TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 
       16.01        23.21        51.06        13.32        43.96        39.88 
TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       43.40        45.80        46.88        37.71        20.81 

  AMP PEAK 27(17Q25.1) MUTATED AMP PEAK 27(17Q25.1) WILD-TYPE 
                          0.13                           0.03 
  AMP PEAK 27(17Q25.1) MUTATED AMP PEAK 27(17Q25.1) WILD-TYPE 
                         91.76                         211.17 
  AMP PEAK 27(17Q25.1) MUTATED AMP PEAK 27(17Q25.1) WILD-TYPE 
                        13.115                         14.930 
[1] "0.1 - 91.8 (13.1)"  "0.0 - 211.2 (14.9)"
[1] "hr=" "1.7"
D27V2, continuous
D27V3, binary
                                cls
clus                               0   1
  AMP PEAK 27(17Q25.1) MUTATED    83  39
  AMP PEAK 27(17Q25.1) WILD-TYPE 487 433
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 27(17Q25.1) MUTATED     83   39
  AMP PEAK 27(17Q25.1) WILD-TYPE  487  433
                        clus
vv                       AMP PEAK 27(17Q25.1) MUTATED
  BRAIN                                            83
  CENTRAL NERVOUS SYSTEM                           39
                        clus
vv                       AMP PEAK 27(17Q25.1) WILD-TYPE
  BRAIN                                             487
  CENTRAL NERVOUS SYSTEM                            433
[1] 2 2
[1] FALSE
D27V4, binary
                                cls
clus                               0   1
  AMP PEAK 27(17Q25.1) MUTATED    42  80
  AMP PEAK 27(17Q25.1) WILD-TYPE 388 532
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 27(17Q25.1) MUTATED     42   80
  AMP PEAK 27(17Q25.1) WILD-TYPE  388  532
        clus
vv       AMP PEAK 27(17Q25.1) MUTATED AMP PEAK 27(17Q25.1) WILD-TYPE
  FEMALE                           42                            388
  MALE                             80                            532
[1] 2 2
[1] FALSE
D27V5, continuous
                                vv
clus                             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  AMP PEAK 27(17Q25.1) MUTATED            19                             5
  AMP PEAK 27(17Q25.1) WILD-TYPE         157                            22
                                vv
clus                             OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  AMP PEAK 27(17Q25.1) MUTATED                  6                14
  AMP PEAK 27(17Q25.1) WILD-TYPE              112               164
                                vv
clus                             TREATED PRIMARY GBM
  AMP PEAK 27(17Q25.1) MUTATED                     2
  AMP PEAK 27(17Q25.1) WILD-TYPE                  16
                                vv
clus                             UNTREATED PRIMARY (DE NOVO) GBM
  AMP PEAK 27(17Q25.1) MUTATED                                76
  AMP PEAK 27(17Q25.1) WILD-TYPE                             449
D27V6, multiclass
                                 clus
vv                                AMP PEAK 27(17Q25.1) MUTATED
  ASTROCYTOMA                                               19
  GLIOBLASTOMA MULTIFORME (GBM)                              5
  OLIGOASTROCYTOMA                                           6
  OLIGODENDROGLIOMA                                         14
  TREATED PRIMARY GBM                                        2
  UNTREATED PRIMARY (DE NOVO) GBM                           76
                                 clus
vv                                AMP PEAK 27(17Q25.1) WILD-TYPE
  ASTROCYTOMA                                                157
  GLIOBLASTOMA MULTIFORME (GBM)                               22
  OLIGOASTROCYTOMA                                           112
  OLIGODENDROGLIOMA                                          164
  TREATED PRIMARY GBM                                         16
  UNTREATED PRIMARY (DE NOVO) GBM                            449
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D27V7, binary
                                cls
clus                               0   1
  AMP PEAK 27(17Q25.1) MUTATED    59  63
  AMP PEAK 27(17Q25.1) WILD-TYPE 415 505
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 27(17Q25.1) MUTATED     59   63
  AMP PEAK 27(17Q25.1) WILD-TYPE  415  505
     clus
vv    AMP PEAK 27(17Q25.1) MUTATED AMP PEAK 27(17Q25.1) WILD-TYPE
  NO                            59                            415
  YES                           63                            505
[1] 2 2
[1] FALSE
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK 27(17Q25.1) MUTATED                                  0     2
  AMP PEAK 27(17Q25.1) WILD-TYPE                                1    19
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 27(17Q25.1) MUTATED                          10   103
  AMP PEAK 27(17Q25.1) WILD-TYPE                        54   819
D27V8, multiclass
                                  clus
vv                                 AMP PEAK 27(17Q25.1) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            0
  ASIAN                                                       2
  BLACK OR AFRICAN AMERICAN                                  10
  WHITE                                                     103
                                  clus
vv                                 AMP PEAK 27(17Q25.1) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              1
  ASIAN                                                        19
  BLACK OR AFRICAN AMERICAN                                    54
  WHITE                                                       819
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D27V9, binary
                                cls
clus                               0   1
  AMP PEAK 27(17Q25.1) MUTATED     4 102
  AMP PEAK 27(17Q25.1) WILD-TYPE  26 789
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 27(17Q25.1) MUTATED      4  102
  AMP PEAK 27(17Q25.1) WILD-TYPE   26  789
                        clus
vv                       AMP PEAK 27(17Q25.1) MUTATED
  HISPANIC OR LATINO                                4
  NOT HISPANIC OR LATINO                          102
                        clus
vv                       AMP PEAK 27(17Q25.1) WILD-TYPE
  HISPANIC OR LATINO                                 26
  NOT HISPANIC OR LATINO                            789
[1] 2 2
[1] FALSE

Clustering(28) Variable = AMP PEAK 28(19P13.3) MUTATION ANALYSIS
D28V1, survival
                                sevent
clus2                              0   1
  AMP PEAK 28(19P13.3) MUTATED   139 222
  AMP PEAK 28(19P13.3) WILD-TYPE 341 337
  AMP PEAK 28(19P13.3) MUTATED AMP PEAK 28(19P13.3) WILD-TYPE 
                           361                            678 
  AMP PEAK 28(19P13.3) MUTATED AMP PEAK 28(19P13.3) WILD-TYPE 
                           222                            337 
$`AMP PEAK 28(19P13.3) MUTATED`
TCGA-02-0007 TCGA-02-0009 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 
       23.18        10.59        82.59        20.61        87.06        77.65 
TCGA-02-0023 TCGA-02-0028 TCGA-02-0037 TCGA-02-0038 TCGA-02-0043 TCGA-02-0051 
       20.12        90.58         3.62        10.72        18.31        15.09 
TCGA-02-0054 TCGA-02-0057 TCGA-02-0064 TCGA-02-0068 TCGA-02-0070 TCGA-02-0071 
        6.54        19.86        19.73        26.43        25.05         5.49 
TCGA-02-0074 TCGA-02-0075 TCGA-02-0080 TCGA-02-0102 TCGA-02-0106 TCGA-02-0111 
       10.19        20.84        89.72        27.02        11.67        23.18 
TCGA-02-0113 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 
       92.65        15.65        48.95        16.54        16.93        17.72 
TCGA-02-0269 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0333 TCGA-02-0430 
       10.75        13.87        14.20        15.95         4.37        10.55 
TCGA-02-2466 TCGA-02-2485 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 
       16.80        15.45         2.70         6.15        20.38        47.61 
TCGA-06-0126 TCGA-06-0127 TCGA-06-0129 TCGA-06-0137 TCGA-06-0145 TCGA-06-0146 
        6.94         3.98        33.67        26.70         2.33        20.09 
TCGA-06-0147 TCGA-06-0148 TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 
       17.79        10.09        19.46        46.59        12.33        13.94 
TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0164 TCGA-06-0173 
       10.45         3.19        10.82         9.44        56.91         4.47 
TCGA-06-0174 TCGA-06-0175 TCGA-06-0177 TCGA-06-0179 TCGA-06-0185 TCGA-06-0190 
        3.22         4.04         4.18        20.25        73.84        10.42 
TCGA-06-0192 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 TCGA-06-0211 
       38.96         0.39         7.66         8.42         7.63        11.84 
TCGA-06-0216 TCGA-06-0221 TCGA-06-0237 TCGA-06-0394 TCGA-06-0402 TCGA-06-0409 
       24.16        19.82        13.64        10.82         0.26        72.36 
TCGA-06-0410 TCGA-06-0414 TCGA-06-0645 TCGA-06-0650 TCGA-06-0743 TCGA-06-0744 
        4.70        35.11         5.75        23.57        26.40        46.88 
TCGA-06-0747 TCGA-06-0877 TCGA-06-0879 TCGA-06-1086 TCGA-06-1802 TCGA-06-1806 
        2.70         5.65        40.41         6.84        15.32        15.32 
TCGA-06-2563 TCGA-06-2565 TCGA-06-2570 TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 
       30.64        16.64        31.50         8.98         8.55         6.71 
TCGA-06-5856 TCGA-06-6388 TCGA-06-6693 TCGA-06-6695 TCGA-06-6699 TCGA-06-A6S0 
        3.75         5.23       120.56         8.32         1.55         3.12 
TCGA-08-0246 TCGA-08-0347 TCGA-08-0352 TCGA-08-0353 TCGA-08-0355 TCGA-08-0356 
        4.18        25.71         1.28         8.42        24.56        31.10 
TCGA-08-0357 TCGA-08-0375 TCGA-08-0386 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 
       37.58        12.23        18.02        13.97         0.72        12.56 
TCGA-08-0510 TCGA-08-0514 TCGA-08-0518 TCGA-08-0529 TCGA-08-0531 TCGA-12-0656 
        4.27        11.08        19.33        18.41         7.56        94.78 
TCGA-12-0657 TCGA-12-0670 TCGA-12-0688 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 
        0.10        25.97        26.66        20.38        28.41        15.06 
TCGA-12-0772 TCGA-12-0778 TCGA-12-0780 TCGA-12-0819 TCGA-12-0820 TCGA-12-0826 
       53.85        14.93        14.86        24.79        18.48        27.78 
TCGA-12-0829 TCGA-12-1094 TCGA-12-1099 TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 
       20.58        12.23         4.14        15.65        25.68        14.73 
TCGA-12-1602 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 
        6.77        26.93        15.22        10.95        12.69        34.92 
TCGA-12-3653 TCGA-14-0783 TCGA-14-0786 TCGA-14-0789 TCGA-14-0790 TCGA-14-0817 
       14.53         6.21        23.05        11.24        13.78         5.39 
TCGA-14-0866 TCGA-14-0867 TCGA-14-1034 TCGA-14-1402 TCGA-14-1450 TCGA-14-1452 
       26.33         2.04        15.95        32.05        58.78         7.10 
TCGA-14-1454 TCGA-14-1823 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-4157 
       30.18        17.85         7.17        17.49         7.96         3.42 
TCGA-15-1446 TCGA-16-0846 TCGA-16-0848 TCGA-16-0861 TCGA-16-1055 TCGA-16-1056 
       19.10         3.91        17.59         4.31        10.29        14.01 
TCGA-16-1062 TCGA-16-1063 TCGA-19-0955 TCGA-19-1386 TCGA-19-1388 TCGA-19-1390 
       21.24        13.97        11.77         9.07        12.95        25.38 
TCGA-19-1392 TCGA-19-1786 TCGA-19-1789 TCGA-19-2620 TCGA-19-2629 TCGA-19-5950 
        3.65         7.17         3.25         4.87        24.23        17.19 
TCGA-19-5951 TCGA-19-5953 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 TCGA-19-A60I 
        8.02         4.73         1.78        14.07        16.80        17.79 
TCGA-19-A6J5 TCGA-26-1799 TCGA-26-5139 TCGA-27-1833 TCGA-27-2518 TCGA-27-2521 
       28.54         9.37         1.58        24.23        24.76        10.39 
TCGA-27-2523 TCGA-27-2524 TCGA-27-2528 TCGA-28-1746 TCGA-28-1749 TCGA-28-1751 
       16.08         7.59        15.78         0.20         9.21         7.63 
TCGA-28-1752 TCGA-28-1753 TCGA-28-2502 TCGA-28-2506 TCGA-28-2513 TCGA-28-2514 
        8.48         1.22         0.66         6.74         7.30         5.26 
TCGA-28-5208 TCGA-28-5209 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 
       17.88        14.53        23.44        11.01        13.64         5.16 
TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1982 
        5.42        15.39         0.10        15.85        19.50         4.67 
TCGA-32-1987 TCGA-32-2495 TCGA-32-2632 TCGA-32-2638 TCGA-32-4208 TCGA-32-4211 
       14.86        15.02         8.84        25.18        21.14        12.59 
TCGA-32-5222 TCGA-41-2572 TCGA-41-2575 TCGA-41-3393 TCGA-41-3915 TCGA-41-5651 
       19.23        13.35         9.53         4.44        11.84        15.12 
TCGA-4W-AA9T TCGA-74-6578 TCGA-76-4925 TCGA-76-4934 TCGA-76-6280 TCGA-76-6656 
       14.76        14.33         4.80         2.53        11.38         4.83 
TCGA-76-6661 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        0.23         7.73         7.79         1.61        17.72        26.30 
TCGA-RR-A6KA TCGA-RR-A6KC TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-6186 TCGA-CS-6188 
        6.28        20.55        21.01         9.96        17.69        23.84 
TCGA-CS-6668 TCGA-DB-5274 TCGA-DB-5278 TCGA-DB-A4XD TCGA-DB-A4XG TCGA-DB-A4XH 
        8.02        75.25        50.17        39.78        72.95        31.63 
TCGA-DB-A64L TCGA-DB-A64P TCGA-DB-A64R TCGA-DB-A64U TCGA-DB-A64W TCGA-DB-A75L 
       24.20        30.12        31.40        27.81        14.40        11.24 
TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66F TCGA-DH-A7UU 
       31.82        30.31         8.02        30.21        17.19         3.45 
TCGA-DU-5854 TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6397 TCGA-DU-6400 
        8.45        15.16        52.11        22.42        46.06         1.22 
TCGA-DU-6402 TCGA-DU-6406 TCGA-DU-7009 TCGA-DU-7015 TCGA-DU-7019 TCGA-DU-7298 
        7.04        16.83       138.28        90.77        26.30        18.94 
TCGA-DU-7300 TCGA-DU-7306 TCGA-DU-8164 TCGA-DU-A6S2 TCGA-DU-A6S6 TCGA-DU-A76K 
       62.01        41.98        21.40         8.65        77.98        11.41 
TCGA-DU-A7TJ TCGA-E1-5304 TCGA-E1-5318 TCGA-E1-A7YO TCGA-FG-5962 TCGA-FG-6692 
        0.56        41.13        78.21        75.02        47.77        18.44 
TCGA-FG-7638 TCGA-FG-7643 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-A4MU 
       22.55        20.09        16.01        20.09        14.96        10.72 
TCGA-FG-A4MW TCGA-FG-A60K TCGA-FG-A70Y TCGA-FG-A710 TCGA-FG-A87Q TCGA-HT-7468 
       18.38        17.82        28.54        36.66         5.72         6.67 
TCGA-HT-7469 TCGA-HT-7472 TCGA-HT-7480 TCGA-HT-7483 TCGA-HT-7605 TCGA-HT-7608 
       11.54         0.03        75.19       172.77         4.57        22.06 
TCGA-HT-7681 TCGA-HT-7687 TCGA-HT-7695 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7875 
       44.68         0.10        14.53         0.49        23.61         0.33 
TCGA-HT-7882 TCGA-HT-8012 TCGA-HT-8104 TCGA-HT-A5RA TCGA-HT-A5RC TCGA-HT-A615 
        3.72         9.40        12.23        27.35         5.33        16.93 
TCGA-HT-A61B TCGA-HW-7495 TCGA-HW-8322 TCGA-KT-A7W1 TCGA-P5-A5F0 TCGA-P5-A72U 
       17.52         4.31        17.82        14.40         4.11         0.16 
TCGA-P5-A730 TCGA-QH-A65X TCGA-QH-A6CV TCGA-QH-A6CZ TCGA-QH-A6XC TCGA-QH-A86X 
        0.20        15.85        14.53         9.17         5.03        11.08 
TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A840 
       88.83        94.03        59.38        30.87         5.46        28.08 
TCGA-S9-A6TV TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6U2 TCGA-S9-A6UB TCGA-S9-A6WE 
       18.77        34.49        31.33        23.64       106.39        72.59 
TCGA-S9-A6WH TCGA-S9-A6WM TCGA-S9-A7IZ TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7QZ 
       32.45        19.86         7.13         8.19         2.04        13.02 
TCGA-S9-A7R1 TCGA-TM-A7C3 TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84G TCGA-TM-A84M 
      169.84        49.45        48.39        24.92        40.64        24.79 
TCGA-TM-A84Q TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CE TCGA-VW-A7QS TCGA-W9-A837 
       25.38        13.51         0.10        35.93        23.21        51.06 
TCGA-WY-A85E 
       20.81 

$`AMP PEAK 28(19P13.3) WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0010 TCGA-02-0011 TCGA-02-0024 
       11.77         4.73        18.35        35.41        20.71        53.10 
TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0033 TCGA-02-0034 TCGA-02-0039 
       42.74        24.59        12.16         2.83        14.14        10.52 
TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 TCGA-02-0052 TCGA-02-0055 TCGA-02-0058 
        6.87        14.73         3.22        12.59         2.50         8.35 
TCGA-02-0059 TCGA-02-0060 TCGA-02-0069 TCGA-02-0079 TCGA-02-0083 TCGA-02-0084 
        9.57         6.02        28.70        27.25        22.72        12.62 
TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0104 
       51.32         8.81        57.76        16.96         3.48        65.00 
TCGA-02-0107 TCGA-02-0114 TCGA-02-0271 TCGA-02-0281 TCGA-02-0317 TCGA-02-0321 
       17.65        99.98        14.47         3.98        12.23         9.90 
TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0337 
        7.73        10.62         7.33        15.91        25.71        25.12 
TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 
       10.59        12.39        14.50        47.11        11.34         9.27 
TCGA-02-0451 TCGA-02-0456 TCGA-02-2470 TCGA-02-2483 TCGA-02-2486 TCGA-06-0128 
       16.21         3.35        12.92        15.32        20.32        22.72 
TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 
       12.95        25.35        14.30        24.23        11.90         0.20 
TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0149 TCGA-06-0160 TCGA-06-0162 
       10.29         2.20        11.74         8.61        11.80         3.42 
TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0176 
       10.65         5.85        19.66         3.29        13.12        91.00 
TCGA-06-0178 TCGA-06-0182 TCGA-06-0184 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 
       88.14         3.65        69.90        27.22        44.58        15.42 
TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0210 TCGA-06-0213 TCGA-06-0214 
        4.67         7.40         5.56         7.40         0.53        15.02 
TCGA-06-0219 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0397 TCGA-06-0412 
        0.72        13.32        20.42        48.69         9.01         9.57 
TCGA-06-0413 TCGA-06-0644 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0686 
        3.16        12.62         5.75         9.80         2.10        14.20 
TCGA-06-0745 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0878 
        7.86         2.70         0.92        43.46        46.19         7.17 
TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1087 TCGA-06-1800 
       16.57        20.78        26.76        23.93         4.04        26.79 
TCGA-06-1801 TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 
       11.84        13.61        33.90         1.08        12.49         4.93 
TCGA-06-2561 TCGA-06-2562 TCGA-06-2564 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 
       17.65        12.56         5.95         5.98         4.37         0.43 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5418 
       11.74         3.55         8.35         4.54         8.81         2.73 
TCGA-06-5858 TCGA-06-5859 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6694 
        6.15         4.57         7.79         5.39         1.48         7.36 
TCGA-06-6697 TCGA-06-6698 TCGA-06-6700 TCGA-06-6701 TCGA-06-A5U0 TCGA-06-A5U1 
       12.85         4.77         4.77         4.96         4.70         1.87 
TCGA-06-A6S1 TCGA-06-A7TK TCGA-06-A7TL TCGA-08-0244 TCGA-08-0245 TCGA-08-0344 
        2.56         5.39         5.42        22.68        37.84       115.86 
TCGA-08-0345 TCGA-08-0346 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 
        1.74         8.42        12.16         9.80        29.23        65.33 
TCGA-08-0354 TCGA-08-0358 TCGA-08-0359 TCGA-08-0380 TCGA-08-0389 TCGA-08-0512 
       17.95        22.29         3.39        14.93        15.35        42.15 
TCGA-08-0516 TCGA-08-0517 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 
       19.59        58.68        10.75         4.80         7.27        15.98 
TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0654 
       15.35        14.73        12.99        34.92        10.45         7.59 
TCGA-12-0662 TCGA-12-0691 TCGA-12-0692 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 
       38.17        12.13         3.65        43.23         7.63         9.73 
TCGA-12-0818 TCGA-12-0821 TCGA-12-0822 TCGA-12-0827 TCGA-12-0828 TCGA-12-1088 
       91.76        10.62        23.51        38.76         8.94       127.59 
TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 TCGA-12-1095 
        5.82         7.59        33.21        21.73        15.98        15.85 
TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-12-3644 TCGA-12-3646 TCGA-12-5295 
        9.11        14.53         3.98        59.77        44.02        14.93 
TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 TCGA-14-0787 
        3.22         2.04        15.12        11.97         0.95         2.24 
TCGA-14-0812 TCGA-14-0813 TCGA-14-0862 TCGA-14-0865 TCGA-14-0871 TCGA-14-1037 
        3.25         1.35         2.89        16.50        28.93        19.30 
TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1451 TCGA-14-1453 
        0.79         1.38         1.12         3.75        23.11         1.15 
TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 
        0.92        40.96         6.67        12.43         0.99         1.97 
TCGA-14-1821 TCGA-14-1825 TCGA-14-1827 TCGA-14-3477 TCGA-15-0742 TCGA-15-1444 
       17.79         7.63         5.88         3.78        13.78        50.53 
TCGA-15-1447 TCGA-15-1449 TCGA-16-0849 TCGA-16-0850 TCGA-16-1045 TCGA-16-1047 
       53.19        13.28        26.07        16.37        29.03         4.57 
TCGA-16-1060 TCGA-16-1460 TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 
        9.14         6.41        21.90         8.61         0.66        14.27 
TCGA-19-0964 TCGA-19-1385 TCGA-19-1387 TCGA-19-1389 TCGA-19-1787 TCGA-19-1791 
        3.39        10.75         5.95         4.64        12.66         0.13 
TCGA-19-2619 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2631 
        9.67         1.08         7.53         0.16         4.08         7.00 
TCGA-19-4065 TCGA-19-5947 TCGA-19-5952 TCGA-19-5954 TCGA-19-5956 TCGA-19-5960 
        7.04         6.64        18.90        12.10        22.49        14.96 
TCGA-19-A6J4 TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 
        3.98        10.03        13.87         9.73        31.33         7.13 
TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-6173 
        9.40        14.86         5.49         8.88        18.97         7.92 
TCGA-26-6174 TCGA-26-A7UX TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1834 
        2.33        19.33         5.06        16.60         9.86        40.54 
TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2519 TCGA-27-2526 
       21.30        30.05        14.04        11.51        10.39         2.86 
TCGA-27-2527 TCGA-28-1747 TCGA-28-1750 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 
       14.40         2.53         8.35         1.55         2.83         0.13 
TCGA-28-2509 TCGA-28-5204 TCGA-28-5207 TCGA-28-5211 TCGA-28-5213 TCGA-28-5219 
        4.77        14.93        11.28        11.77        31.27        22.68 
TCGA-28-5220 TCGA-32-1973 TCGA-32-1976 TCGA-32-1980 TCGA-32-1986 TCGA-32-1991 
       12.76        21.07         0.49         1.18        12.69        16.93 
TCGA-32-2491 TCGA-32-2494 TCGA-32-2615 TCGA-32-2616 TCGA-32-2634 TCGA-32-4210 
       12.23        20.78        15.95         7.36        22.78         3.72 
TCGA-32-4213 TCGA-32-4719 TCGA-41-2571 TCGA-41-2573 TCGA-41-3392 TCGA-41-4097 
       19.86        10.85         0.85         8.94         0.99         0.20 
TCGA-41-6646 TCGA-4W-AA9S TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6581 
       12.46         4.14         3.45        20.91         4.34         8.22 
TCGA-74-6584 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4935 
        7.50         4.54         3.09         3.65         9.17        10.78 
TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 
       16.70         3.29         2.70        17.06         8.35        20.98 
TCGA-76-6657 TCGA-76-6662 TCGA-OX-A56R TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 
        5.03         9.27         5.92         4.70         7.69        43.89 
TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5397 
       18.15        10.62        64.64        40.18         0.10         6.38 
TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6669 TCGA-CS-6670 
       17.95        12.43         8.48         7.56         7.40         6.61 
TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5279 
      122.73        81.96        47.93        72.92        50.86        44.52 
TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC 
       36.56        78.28        46.42        18.84        30.21        46.72 
TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A64O TCGA-DB-A64Q TCGA-DB-A64S TCGA-DB-A64V 
       37.45        33.57        25.48         5.98        27.45        29.23 
TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 
       18.51        12.10        17.88        30.74        16.18        19.96 
TCGA-DH-5143 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US 
       14.40        42.05        27.81        17.19        54.25        13.12 
TCGA-DH-A7UT TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 
       13.38        18.61        18.02        14.56        17.46         6.74 
TCGA-DU-5853 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-6392 
       13.38         6.81       182.33        18.94        17.49       211.17 
TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6399 TCGA-DU-6401 TCGA-DU-6403 TCGA-DU-6404 
       49.02        75.16        65.75        87.45        11.64       133.74 
TCGA-DU-6405 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 
       19.89        94.52       114.08         7.96         7.73        11.47 
TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 
       62.96       156.23        14.99       105.21         6.54         8.84 
TCGA-DU-7014 TCGA-DU-7018 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7299 
      117.40        30.67        10.36         7.96        94.32        44.02 
TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 
       25.91        60.30        23.31         2.76         5.10        23.74 
TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 
       14.60        20.68        19.13        16.96        15.48        14.17 
TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW 
       14.24        12.59        15.12         4.96         3.65         5.65 
TCGA-DU-A5TY TCGA-DU-A6S3 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76L TCGA-DU-A76O 
       12.20         2.70         7.23         5.98        26.76         7.13 
TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC 
       21.30        17.98       124.50        77.88        42.31        23.51 
TCGA-DU-A7TD TCGA-DU-A7TG TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5305 TCGA-E1-5307 
        7.50        44.42        50.14        67.46        79.99        57.93 
TCGA-E1-5311 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7Z6 
      134.27        95.57       130.78        32.45        36.82        32.35 
TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 
       14.33         0.23         0.20        25.48        34.36        36.82 
TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-7634 TCGA-FG-7636 
       18.77        14.93        24.99        23.97        15.35        17.88 
TCGA-FG-7641 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8189 TCGA-FG-8191 
       20.61        12.95        13.68        14.24        22.52        32.61 
TCGA-FG-A4MT TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60L TCGA-FG-A6IZ 
       38.27        18.71        23.70        14.76        16.41        15.02 
TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Z TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N 
       16.44        22.26        10.78        48.69        20.45        13.58 
TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7473 TCGA-HT-7474 
       27.52         0.10        40.11         0.13        16.54         3.75 
TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7481 
       17.42         6.54        24.26         6.38        40.34        95.93 
TCGA-HT-7482 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 
      106.95         4.01         5.03        29.85        23.18       122.47 
TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 
       17.29         3.16        45.99        56.09        57.60         0.23 
TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7684 TCGA-HT-7686 
       14.27         0.16        16.24         0.76         6.05        42.74 
TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 
       31.69        14.96         0.10         0.10         2.96        17.52 
TCGA-HT-7694 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 
        6.90        39.48        19.23        39.09         0.23        50.63 
TCGA-HT-7874 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7884 
       37.15         0.13         3.68         5.33        35.47        11.28 
TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 
       31.43         1.64        16.24        63.55         0.10        37.87 
TCGA-HT-8019 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 
       33.01         6.25         0.10         0.46         2.50         5.56 
TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8563 TCGA-HT-8564 
       13.78         0.23        29.59        34.19        28.27        15.72 
TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RB 
        0.23        26.04         0.13        20.22         0.07         0.10 
TCGA-HT-A614 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61C 
        2.70         1.81        16.14        16.83        21.40        17.65 
TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 
        2.43        10.52        15.35        11.05         0.10        29.92 
TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7493 TCGA-HW-8319 
       19.89         8.32        19.23        40.18        35.90        21.70 
TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM 
       21.60        19.59        20.35        12.76        20.81        20.71 
TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX 
       19.00        42.77        14.40         0.23         6.71         1.64 
TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 
        2.37         2.30         5.88         7.63         0.76         1.28 
TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A731 TCGA-P5-A733 TCGA-QH-A65R 
       10.42        13.25        11.64         9.01        13.61        15.16 
TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CW 
        2.53        12.62        14.04        19.33        14.83        13.61 
TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 
       12.23         2.20        10.29        14.53        16.34        16.73 
TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A870 TCGA-R8-A6MO TCGA-RY-A83Z TCGA-RY-A843 
        1.91        16.50        12.99        32.65         9.90         2.07 
TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TW TCGA-S9-A6TZ 
       19.59        30.67        62.17        87.12        37.84        28.70 
TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 
       22.95        17.62        32.61        16.08        98.24        95.93 
TCGA-S9-A6UA TCGA-S9-A6WD TCGA-S9-A6WG TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WN 
        5.85        69.50        80.12        84.99        31.10        15.91 
TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX 
       18.61        15.16        14.07        36.13         7.92        22.32 
TCGA-S9-A7IY TCGA-S9-A7J0 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY 
       23.51        20.02        17.03        15.06        13.12        28.37 
TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V 
       10.39        99.06        30.05        98.63        31.59        18.71 
TCGA-S9-A89Z TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A84C TCGA-TM-A84F 
       11.97        48.33        49.32        34.78        16.18        59.05 
TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84O TCGA-TM-A84R 
       30.44        28.08        24.16        40.83        33.24        18.61 
TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RH TCGA-TQ-A7RW TCGA-VM-A8C8 TCGA-VM-A8C9 
       14.93        23.80        15.98        26.99        43.04        30.08 
TCGA-VM-A8CD TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A8FI TCGA-WH-A86K 
        7.89        23.47        37.05        16.01         8.05        13.32 
TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D 
       43.96        39.88        43.40        45.80        46.88        37.71 

  AMP PEAK 28(19P13.3) MUTATED AMP PEAK 28(19P13.3) WILD-TYPE 
                          0.03                           0.07 
  AMP PEAK 28(19P13.3) MUTATED AMP PEAK 28(19P13.3) WILD-TYPE 
                        172.77                         211.17 
  AMP PEAK 28(19P13.3) MUTATED AMP PEAK 28(19P13.3) WILD-TYPE 
                        15.160                         14.435 
[1] "0.0 - 172.8 (15.2)" "0.1 - 211.2 (14.4)"
[1] "hr=" "1.2"
D28V2, continuous
D28V3, binary
                                cls
clus                               0   1
  AMP PEAK 28(19P13.3) MUTATED   242 120
  AMP PEAK 28(19P13.3) WILD-TYPE 328 352
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 28(19P13.3) MUTATED    242  120
  AMP PEAK 28(19P13.3) WILD-TYPE  328  352
                        clus
vv                       AMP PEAK 28(19P13.3) MUTATED
  BRAIN                                           242
  CENTRAL NERVOUS SYSTEM                          120
                        clus
vv                       AMP PEAK 28(19P13.3) WILD-TYPE
  BRAIN                                             328
  CENTRAL NERVOUS SYSTEM                            352
[1] 2 2
[1] FALSE
D28V4, binary
                                cls
clus                               0   1
  AMP PEAK 28(19P13.3) MUTATED   146 216
  AMP PEAK 28(19P13.3) WILD-TYPE 284 396
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 28(19P13.3) MUTATED    146  216
  AMP PEAK 28(19P13.3) WILD-TYPE  284  396
        clus
vv       AMP PEAK 28(19P13.3) MUTATED AMP PEAK 28(19P13.3) WILD-TYPE
  FEMALE                          146                            284
  MALE                            216                            396
[1] 2 2
[1] FALSE
D28V5, continuous
                                vv
clus                             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  AMP PEAK 28(19P13.3) MUTATED            24                            11
  AMP PEAK 28(19P13.3) WILD-TYPE         152                            16
                                vv
clus                             OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  AMP PEAK 28(19P13.3) MUTATED                 27                69
  AMP PEAK 28(19P13.3) WILD-TYPE               91               109
                                vv
clus                             TREATED PRIMARY GBM
  AMP PEAK 28(19P13.3) MUTATED                    10
  AMP PEAK 28(19P13.3) WILD-TYPE                   8
                                vv
clus                             UNTREATED PRIMARY (DE NOVO) GBM
  AMP PEAK 28(19P13.3) MUTATED                               221
  AMP PEAK 28(19P13.3) WILD-TYPE                             304
D28V6, multiclass
                                 clus
vv                                AMP PEAK 28(19P13.3) MUTATED
  ASTROCYTOMA                                               24
  GLIOBLASTOMA MULTIFORME (GBM)                             11
  OLIGOASTROCYTOMA                                          27
  OLIGODENDROGLIOMA                                         69
  TREATED PRIMARY GBM                                       10
  UNTREATED PRIMARY (DE NOVO) GBM                          221
                                 clus
vv                                AMP PEAK 28(19P13.3) WILD-TYPE
  ASTROCYTOMA                                                152
  GLIOBLASTOMA MULTIFORME (GBM)                               16
  OLIGOASTROCYTOMA                                            91
  OLIGODENDROGLIOMA                                          109
  TREATED PRIMARY GBM                                          8
  UNTREATED PRIMARY (DE NOVO) GBM                            304
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D28V7, binary
                                cls
clus                               0   1
  AMP PEAK 28(19P13.3) MUTATED   185 177
  AMP PEAK 28(19P13.3) WILD-TYPE 289 391
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 28(19P13.3) MUTATED    185  177
  AMP PEAK 28(19P13.3) WILD-TYPE  289  391
     clus
vv    AMP PEAK 28(19P13.3) MUTATED AMP PEAK 28(19P13.3) WILD-TYPE
  NO                           185                            289
  YES                          177                            391
[1] 2 2
[1] FALSE
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK 28(19P13.3) MUTATED                                  0    10
  AMP PEAK 28(19P13.3) WILD-TYPE                                1    11
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 28(19P13.3) MUTATED                          25   317
  AMP PEAK 28(19P13.3) WILD-TYPE                        39   605
D28V8, multiclass
                                  clus
vv                                 AMP PEAK 28(19P13.3) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            0
  ASIAN                                                      10
  BLACK OR AFRICAN AMERICAN                                  25
  WHITE                                                     317
                                  clus
vv                                 AMP PEAK 28(19P13.3) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              1
  ASIAN                                                        11
  BLACK OR AFRICAN AMERICAN                                    39
  WHITE                                                       605
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D28V9, binary
                                cls
clus                               0   1
  AMP PEAK 28(19P13.3) MUTATED    11 308
  AMP PEAK 28(19P13.3) WILD-TYPE  19 583
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 28(19P13.3) MUTATED     11  308
  AMP PEAK 28(19P13.3) WILD-TYPE   19  583
                        clus
vv                       AMP PEAK 28(19P13.3) MUTATED
  HISPANIC OR LATINO                               11
  NOT HISPANIC OR LATINO                          308
                        clus
vv                       AMP PEAK 28(19P13.3) WILD-TYPE
  HISPANIC OR LATINO                                 19
  NOT HISPANIC OR LATINO                            583
[1] 2 2
[1] FALSE

Clustering(29) Variable = AMP PEAK 29(19P13.2) MUTATION ANALYSIS
D29V1, survival
                                sevent
clus2                              0   1
  AMP PEAK 29(19P13.2) MUTATED   133 223
  AMP PEAK 29(19P13.2) WILD-TYPE 347 336
  AMP PEAK 29(19P13.2) MUTATED AMP PEAK 29(19P13.2) WILD-TYPE 
                           356                            683 
  AMP PEAK 29(19P13.2) MUTATED AMP PEAK 29(19P13.2) WILD-TYPE 
                           223                            336 
$`AMP PEAK 29(19P13.2) MUTATED`
TCGA-02-0009 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0028 
       10.59        20.61        87.06        77.65        20.12        90.58 
TCGA-02-0037 TCGA-02-0038 TCGA-02-0043 TCGA-02-0051 TCGA-02-0054 TCGA-02-0057 
        3.62        10.72        18.31        15.09         6.54        19.86 
TCGA-02-0064 TCGA-02-0068 TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 
       19.73        26.43        25.05         5.49        10.19        20.84 
TCGA-02-0080 TCGA-02-0102 TCGA-02-0106 TCGA-02-0111 TCGA-02-0113 TCGA-02-0114 
       89.72        27.02        11.67        23.18        92.65        99.98 
TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 
       15.65        48.95        16.54        16.93        17.72        10.75 
TCGA-02-0271 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0333 TCGA-02-0430 
       14.47        13.87        14.20        15.95         4.37        10.55 
TCGA-02-2466 TCGA-02-2485 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 
       16.80        15.45         2.70         6.15        20.38        47.61 
TCGA-06-0126 TCGA-06-0127 TCGA-06-0137 TCGA-06-0145 TCGA-06-0147 TCGA-06-0148 
        6.94         3.98        26.70         2.33        17.79        10.09 
TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0158 
       19.46        46.59        12.33        13.94        10.45        10.82 
TCGA-06-0159 TCGA-06-0164 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0177 
        9.44        56.91         4.47         3.22         4.04         4.18 
TCGA-06-0179 TCGA-06-0185 TCGA-06-0190 TCGA-06-0192 TCGA-06-0201 TCGA-06-0206 
       20.25        73.84        10.42        38.96         0.39         7.66 
TCGA-06-0208 TCGA-06-0209 TCGA-06-0211 TCGA-06-0216 TCGA-06-0221 TCGA-06-0237 
        8.42         7.63        11.84        24.16        19.82        13.64 
TCGA-06-0394 TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 TCGA-06-0414 TCGA-06-0645 
       10.82         0.26        72.36         4.70        35.11         5.75 
TCGA-06-0650 TCGA-06-0743 TCGA-06-0744 TCGA-06-0747 TCGA-06-0875 TCGA-06-0877 
       23.57        26.40        46.88         2.70        43.46         5.65 
TCGA-06-0879 TCGA-06-1086 TCGA-06-1800 TCGA-06-1802 TCGA-06-1806 TCGA-06-2563 
       40.41         6.84        26.79        15.32        15.32        30.64 
TCGA-06-2564 TCGA-06-2565 TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 TCGA-06-6388 
        5.95        16.64         8.98         8.55         6.71         5.23 
TCGA-06-6695 TCGA-06-6698 TCGA-06-6699 TCGA-06-A6S0 TCGA-08-0246 TCGA-08-0347 
        8.32         4.77         1.55         3.12         4.18        25.71 
TCGA-08-0352 TCGA-08-0353 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0375 
        1.28         8.42        24.56        31.10        37.58        12.23 
TCGA-08-0386 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 TCGA-08-0514 
       18.02        13.97         0.72        12.56         4.27        11.08 
TCGA-08-0518 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0616 TCGA-12-0656 
       19.33        15.98        18.41         7.56        14.73        94.78 
TCGA-12-0657 TCGA-12-0670 TCGA-12-0688 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 
        0.10        25.97        26.66        20.38        28.41        15.06 
TCGA-12-0772 TCGA-12-0780 TCGA-12-0819 TCGA-12-0820 TCGA-12-0826 TCGA-12-0829 
       53.85        14.86        24.79        18.48        27.78        20.58 
TCGA-12-1094 TCGA-12-1099 TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 TCGA-12-3648 
       12.23         4.14        15.65        25.68        14.73        26.93 
TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 TCGA-12-3653 TCGA-12-5299 TCGA-14-0783 
       15.22        10.95        34.92        14.53         3.22         6.21 
TCGA-14-0786 TCGA-14-0789 TCGA-14-0790 TCGA-14-0817 TCGA-14-0866 TCGA-14-0867 
       23.05        11.24        13.78         5.39        26.33         2.04 
TCGA-14-1034 TCGA-14-1402 TCGA-14-1450 TCGA-14-1452 TCGA-14-1454 TCGA-14-1823 
       15.95        32.05        58.78         7.10        30.18        17.85 
TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-4157 TCGA-15-1446 TCGA-15-1449 
        7.17        17.49         7.96         3.42        19.10        13.28 
TCGA-16-0846 TCGA-16-0848 TCGA-16-1055 TCGA-16-1056 TCGA-16-1062 TCGA-16-1063 
        3.91        17.59        10.29        14.01        21.24        13.97 
TCGA-19-0955 TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 TCGA-19-1390 TCGA-19-1392 
       11.77         9.07         5.95        12.95        25.38         3.65 
TCGA-19-1786 TCGA-19-1789 TCGA-19-2620 TCGA-19-2624 TCGA-19-2629 TCGA-19-5950 
        7.17         3.25         4.87         0.16        24.23        17.19 
TCGA-19-5951 TCGA-19-5953 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 TCGA-19-A60I 
        8.02         4.73         1.78        14.07        16.80        17.79 
TCGA-26-1799 TCGA-26-5139 TCGA-27-1831 TCGA-27-1833 TCGA-27-2518 TCGA-27-2521 
        9.37         1.58        16.60        24.23        24.76        10.39 
TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2528 TCGA-28-1746 TCGA-28-1749 
       16.08         7.59         2.86        15.78         0.20         9.21 
TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-2502 TCGA-28-2506 TCGA-28-2513 
        7.63         8.48         1.22         0.66         6.74         7.30 
TCGA-28-2514 TCGA-28-5208 TCGA-28-5209 TCGA-28-5214 TCGA-28-5216 TCGA-28-5218 
        5.26        17.88        14.53        23.44        13.64         5.16 
TCGA-28-5219 TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 
       22.68         5.42        15.39         0.10        15.85        19.50 
TCGA-32-1982 TCGA-32-1987 TCGA-32-2495 TCGA-32-2632 TCGA-32-2638 TCGA-32-4208 
        4.67        14.86        15.02         8.84        25.18        21.14 
TCGA-32-4210 TCGA-32-4211 TCGA-32-5222 TCGA-41-2572 TCGA-41-2575 TCGA-41-3392 
        3.72        12.59        19.23        13.35         9.53         0.99 
TCGA-41-3393 TCGA-41-3915 TCGA-41-5651 TCGA-4W-AA9T TCGA-74-6578 TCGA-76-4925 
        4.44        11.84        15.12        14.76        14.33         4.80 
TCGA-76-4934 TCGA-76-6280 TCGA-76-6656 TCGA-76-6661 TCGA-76-6663 TCGA-76-6664 
        2.53        11.38         4.83         0.23         7.73         7.79 
TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 TCGA-RR-A6KA TCGA-RR-A6KC TCGA-CS-5395 
        1.61        17.72        26.30         6.28        20.55        21.01 
TCGA-CS-5396 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6668 TCGA-DB-5274 TCGA-DB-5278 
        9.96        17.69        23.84         8.02        75.25        50.17 
TCGA-DB-A4XD TCGA-DB-A4XG TCGA-DB-A64L TCGA-DB-A64P TCGA-DB-A64R TCGA-DB-A75L 
       39.78        72.95        24.20        30.12        31.40        11.24 
TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66F TCGA-DU-5854 
       31.82        30.31         8.02        30.21        17.19         8.45 
TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6397 TCGA-DU-6400 TCGA-DU-6402 
       15.16        52.11        22.42        46.06         1.22         7.04 
TCGA-DU-6406 TCGA-DU-7009 TCGA-DU-7015 TCGA-DU-7019 TCGA-DU-7298 TCGA-DU-7306 
       16.83       138.28        90.77        26.30        18.94        41.98 
TCGA-DU-8164 TCGA-DU-A5TT TCGA-DU-A6S2 TCGA-DU-A6S6 TCGA-DU-A76K TCGA-DU-A7TD 
       21.40         4.96         8.65        77.98        11.41         7.50 
TCGA-DU-A7TJ TCGA-E1-5304 TCGA-E1-5318 TCGA-E1-A7YO TCGA-FG-5962 TCGA-FG-6692 
        0.56        41.13        78.21        75.02        47.77        18.44 
TCGA-FG-7638 TCGA-FG-7643 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-A4MU 
       22.55        20.09        16.01        20.09        14.96        10.72 
TCGA-FG-A4MW TCGA-FG-A60K TCGA-FG-A710 TCGA-FG-A87Q TCGA-HT-7468 TCGA-HT-7469 
       18.38        17.82        36.66         5.72         6.67        11.54 
TCGA-HT-7480 TCGA-HT-7605 TCGA-HT-7608 TCGA-HT-7681 TCGA-HT-7687 TCGA-HT-7695 
       75.19         4.57        22.06        44.68         0.10        14.53 
TCGA-HT-7860 TCGA-HT-7875 TCGA-HT-7882 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8104 
        0.49         0.33         3.72        16.24         9.40        12.23 
TCGA-HT-A5RA TCGA-HT-A5RC TCGA-HT-A615 TCGA-HT-A61B TCGA-HW-7495 TCGA-HW-8322 
       27.35         5.33        16.93        17.52         4.31        17.82 
TCGA-KT-A7W1 TCGA-P5-A5F0 TCGA-P5-A72U TCGA-P5-A730 TCGA-QH-A65X TCGA-QH-A6CU 
       14.40         4.11         0.16         0.20        15.85        14.83 
TCGA-QH-A6CV TCGA-QH-A6CZ TCGA-QH-A6XC TCGA-QH-A86X TCGA-R8-A6MK TCGA-R8-A6ML 
       14.53         9.17         5.03        11.08        88.83        94.03 
TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A840 TCGA-S9-A6TV TCGA-S9-A6TX 
       59.38        30.87         5.46        28.08        18.77        34.49 
TCGA-S9-A6TY TCGA-S9-A6U2 TCGA-S9-A6UB TCGA-S9-A6WE TCGA-S9-A6WH TCGA-S9-A6WM 
       31.33        23.64       106.39        72.59        32.45        19.86 
TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-TM-A7C3 TCGA-TM-A84B 
        8.19         2.04        13.02       169.84        49.45        24.92 
TCGA-TM-A84G TCGA-TM-A84L TCGA-TM-A84M TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CE 
       40.64        40.83        24.79        13.51         0.10        35.93 
TCGA-VW-A7QS TCGA-W9-A837 
       23.21        51.06 

$`AMP PEAK 29(19P13.2) WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0010 TCGA-02-0011 
       11.77         4.73        18.35        23.18        35.41        20.71 
TCGA-02-0014 TCGA-02-0024 TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0033 
       82.59        53.10        42.74        24.59        12.16         2.83 
TCGA-02-0034 TCGA-02-0039 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 TCGA-02-0052 
       14.14        10.52         6.87        14.73         3.22        12.59 
TCGA-02-0055 TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0069 TCGA-02-0079 
        2.50         8.35         9.57         6.02        28.70        27.25 
TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 
       22.72        12.62        51.32         8.81        57.76        16.96 
TCGA-02-0099 TCGA-02-0104 TCGA-02-0107 TCGA-02-0281 TCGA-02-0317 TCGA-02-0321 
        3.48        65.00        17.65         3.98        12.23         9.90 
TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0337 
        7.73        10.62         7.33        15.91        25.71        25.12 
TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 
       10.59        12.39        14.50        47.11        11.34         9.27 
TCGA-02-0451 TCGA-02-0456 TCGA-02-2470 TCGA-02-2483 TCGA-02-2486 TCGA-06-0128 
       16.21         3.35        12.92        15.32        20.32        22.72 
TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0138 TCGA-06-0139 
       33.67        12.95        25.35        14.30        24.23        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0146 TCGA-06-0149 
        0.20        10.29         2.20        11.74        20.09         8.61 
TCGA-06-0157 TCGA-06-0160 TCGA-06-0162 TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 
        3.19        11.80         3.42        10.65         5.85        19.66 
TCGA-06-0169 TCGA-06-0171 TCGA-06-0176 TCGA-06-0178 TCGA-06-0182 TCGA-06-0184 
        3.29        13.12        91.00        88.14         3.65        69.90 
TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 
       27.22        44.58        15.42         4.67         7.40         5.56 
TCGA-06-0210 TCGA-06-0213 TCGA-06-0214 TCGA-06-0219 TCGA-06-0238 TCGA-06-0240 
        7.40         0.53        15.02         0.72        13.32        20.42 
TCGA-06-0241 TCGA-06-0397 TCGA-06-0412 TCGA-06-0413 TCGA-06-0644 TCGA-06-0646 
       48.69         9.01         9.57         3.16        12.62         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0686 TCGA-06-0745 TCGA-06-0749 TCGA-06-0750 
        9.80         2.10        14.20         7.86         2.70         0.92 
TCGA-06-0876 TCGA-06-0878 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 
       46.19         7.17        16.57        20.78        26.76        23.93 
TCGA-06-1087 TCGA-06-1801 TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 
        4.04        11.84        13.61        33.90         1.08        12.49 
TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 
        4.93        17.65        12.56         5.98         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       31.50        11.74         3.55         8.35         4.54         8.81 
TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6389 TCGA-06-6390 
        2.73         3.75         6.15         4.57         7.79         5.39 
TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6697 TCGA-06-6700 TCGA-06-6701 
        1.48       120.56         7.36        12.85         4.77         4.96 
TCGA-06-A5U0 TCGA-06-A5U1 TCGA-06-A6S1 TCGA-06-A7TK TCGA-06-A7TL TCGA-08-0244 
        4.70         1.87         2.56         5.39         5.42        22.68 
TCGA-08-0245 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0348 TCGA-08-0349 
       37.84       115.86         1.74         8.42        12.16         9.80 
TCGA-08-0350 TCGA-08-0351 TCGA-08-0354 TCGA-08-0358 TCGA-08-0359 TCGA-08-0380 
       29.23        65.33        17.95        22.29         3.39        14.93 
TCGA-08-0389 TCGA-08-0512 TCGA-08-0516 TCGA-08-0517 TCGA-08-0520 TCGA-08-0521 
       15.35        42.15        19.59        58.68        10.75         4.80 
TCGA-08-0524 TCGA-12-0615 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0654 
        7.27        15.35        12.99        34.92        10.45         7.59 
TCGA-12-0662 TCGA-12-0691 TCGA-12-0692 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 
       38.17        12.13         3.65        43.23         7.63         9.73 
TCGA-12-0778 TCGA-12-0818 TCGA-12-0821 TCGA-12-0822 TCGA-12-0827 TCGA-12-0828 
       14.93        91.76        10.62        23.51        38.76         8.94 
TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 
      127.59         5.82         7.59        33.21        21.73        15.98 
TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-12-1602 TCGA-12-3644 
       15.85         9.11        14.53         3.98         6.77        59.77 
TCGA-12-3646 TCGA-12-3651 TCGA-12-5295 TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 
       44.02        12.69        14.93         2.04        15.12        11.97 
TCGA-14-0781 TCGA-14-0787 TCGA-14-0812 TCGA-14-0813 TCGA-14-0862 TCGA-14-0865 
        0.95         2.24         3.25         1.35         2.89        16.50 
TCGA-14-0871 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 
       28.93        19.30         0.79         1.38         1.12         3.75 
TCGA-14-1451 TCGA-14-1453 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 
       23.11         1.15         0.92        40.96         6.67        12.43 
TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 TCGA-14-1825 TCGA-14-1827 TCGA-14-3477 
        0.99         1.97        17.79         7.63         5.88         3.78 
TCGA-15-0742 TCGA-15-1444 TCGA-15-1447 TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 
       13.78        50.53        53.19        26.07        16.37         4.31 
TCGA-16-1045 TCGA-16-1047 TCGA-16-1060 TCGA-16-1460 TCGA-19-0957 TCGA-19-0960 
       29.03         4.57         9.14         6.41        21.90         8.61 
TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 TCGA-19-1389 TCGA-19-1787 
        0.66        14.27         3.39        10.75         4.64        12.66 
TCGA-19-1791 TCGA-19-2619 TCGA-19-2621 TCGA-19-2623 TCGA-19-2625 TCGA-19-2631 
        0.13         9.67         1.08         7.53         4.08         7.00 
TCGA-19-4065 TCGA-19-5947 TCGA-19-5952 TCGA-19-5954 TCGA-19-5956 TCGA-19-5960 
        7.04         6.64        18.90        12.10        22.49        14.96 
TCGA-19-A6J4 TCGA-19-A6J5 TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 TCGA-26-1442 
        3.98        28.54        10.03        13.87         9.73        31.33 
TCGA-26-1443 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 
        7.13         9.40        14.86         5.49         8.88        18.97 
TCGA-26-6173 TCGA-26-6174 TCGA-26-A7UX TCGA-27-1830 TCGA-27-1832 TCGA-27-1834 
        7.92         2.33        19.33         5.06         9.86        40.54 
TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2519 TCGA-27-2527 
       21.30        30.05        14.04        11.51        10.39        14.40 
TCGA-28-1747 TCGA-28-1750 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2509 
        2.53         8.35         1.55         2.83         0.13         4.77 
TCGA-28-5204 TCGA-28-5207 TCGA-28-5211 TCGA-28-5213 TCGA-28-5215 TCGA-28-5220 
       14.93        11.28        11.77        31.27        11.01        12.76 
TCGA-32-1973 TCGA-32-1976 TCGA-32-1980 TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 
       21.07         0.49         1.18        12.69        16.93        12.23 
TCGA-32-2494 TCGA-32-2615 TCGA-32-2616 TCGA-32-2634 TCGA-32-4213 TCGA-32-4719 
       20.78        15.95         7.36        22.78        19.86        10.85 
TCGA-41-2571 TCGA-41-2573 TCGA-41-4097 TCGA-41-6646 TCGA-4W-AA9S TCGA-74-6573 
        0.85         8.94         0.20        12.46         4.14         3.45 
TCGA-74-6575 TCGA-74-6577 TCGA-74-6581 TCGA-74-6584 TCGA-76-4926 TCGA-76-4928 
       20.91         4.34         8.22         7.50         4.54         3.09 
TCGA-76-4929 TCGA-76-4931 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 
        3.65         9.17        10.78        16.70         3.29         2.70 
TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6657 TCGA-76-6662 TCGA-OX-A56R 
       17.06         8.35        20.98         5.03         9.27         5.92 
TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 
        4.70         7.69        43.89        18.15        10.62        64.64 
TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5397 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 
       40.18         0.10         6.38        17.95        12.43         8.48 
TCGA-CS-6667 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5275 
        7.56         7.40         6.61       122.73        81.96        47.93 
TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 
       72.92        50.86        44.52        36.56        78.28        46.42 
TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XH 
       18.84        30.21        46.72        37.45        33.57        31.63 
TCGA-DB-A64O TCGA-DB-A64Q TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W 
       25.48         5.98        27.45        27.81        29.23        14.40 
TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 
       18.51        12.10        17.88        30.74        16.18        19.96 
TCGA-DH-5143 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US 
       14.40        42.05        27.81        17.19        54.25        13.12 
TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 
       13.38         3.45        18.61        18.02        14.56        17.46 
TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 
        6.74        13.38         6.81       182.33        18.94        17.49 
TCGA-DU-6392 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6399 TCGA-DU-6401 TCGA-DU-6403 
      211.17        49.02        75.16        65.75        87.45        11.64 
TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 
      133.74        19.89        94.52       114.08         7.96         7.73 
TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 
       11.47        62.96       156.23        14.99       105.21         6.54 
TCGA-DU-7013 TCGA-DU-7014 TCGA-DU-7018 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 
        8.84       117.40        30.67        10.36         7.96        94.32 
TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7309 
       44.02        62.01        25.91        60.30        23.31         2.76 
TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8165 TCGA-DU-8166 
        5.10        23.74        14.60        20.68        19.13        16.96 
TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TU 
       15.48        14.17        14.24        12.59        15.12         3.65 
TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S3 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76L 
        5.65        12.20         2.70         7.23         5.98        26.76 
TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB 
        7.13        21.30        17.98       124.50        77.88        42.31 
TCGA-DU-A7TC TCGA-DU-A7TG TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5305 TCGA-E1-5307 
       23.51        44.42        50.14        67.46        79.99        57.93 
TCGA-E1-5311 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7Z6 
      134.27        95.57       130.78        32.45        36.82        32.35 
TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 
       14.33         0.23         0.20        25.48        34.36        36.82 
TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-7634 TCGA-FG-7636 
       18.77        14.93        24.99        23.97        15.35        17.88 
TCGA-FG-7641 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8189 TCGA-FG-8191 
       20.61        12.95        13.68        14.24        22.52        32.61 
TCGA-FG-A4MT TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60L TCGA-FG-A6IZ 
       38.27        18.71        23.70        14.76        16.41        15.02 
TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A711 TCGA-FG-A713 
       16.44        22.26        28.54        10.78        48.69        20.45 
TCGA-FG-A87N TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 
       13.58        27.52         0.10        40.11         0.13         0.03 
TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 
       16.54         3.75        17.42         6.54        24.26         6.38 
TCGA-HT-7479 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 
       40.34        95.93       106.95       172.77         4.01         5.03 
TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7609 
       29.85        23.18       122.47        17.29         3.16        45.99 
TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 
       56.09        57.60         0.23        14.27         0.16        16.24 
TCGA-HT-7680 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 
        0.76         6.05        42.74        31.69        14.96         0.10 
TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7854 TCGA-HT-7855 
        0.10         2.96        17.52         6.90        39.48        19.23 
TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7877 
       39.09         0.23        50.63        23.61        37.15         0.13 
TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 
        3.68         5.33        35.47        11.28        31.43         1.64 
TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8105 TCGA-HT-8106 
       63.55         0.10        37.87        33.01         6.25         0.10 
TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 
        0.46         2.50         5.56        13.78         0.23        29.59 
TCGA-HT-8114 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 
       34.19        28.27        15.72         0.23        26.04         0.13 
TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RB TCGA-HT-A614 TCGA-HT-A616 TCGA-HT-A617 
       20.22         0.07         0.10         2.70         1.81        16.14 
TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K 
       16.83        21.40        17.65         2.43        10.52        15.35 
TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 
       11.05         0.10        29.92        19.89         8.32        19.23 
TCGA-HW-7491 TCGA-HW-7493 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-A5KJ 
       40.18        35.90        21.70        21.60        19.59        20.35 
TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X 
       12.76        20.81        20.71        19.00        42.77        14.40 
TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F1 
        0.23         6.71         1.64         2.37         2.30         5.88 
TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z 
        7.63         0.76         1.28        10.42        13.25        11.64 
TCGA-P5-A731 TCGA-P5-A733 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65Z 
        9.01        13.61        15.16         2.53        12.62        14.04 
TCGA-QH-A6CS TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6X3 TCGA-QH-A6X4 
       19.33        13.61        12.23         2.20        10.29        14.53 
TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A870 TCGA-R8-A6MO 
       16.34        16.73         1.91        16.50        12.99        32.65 
TCGA-RY-A83Z TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU 
        9.90         2.07        19.59        30.67        62.17        87.12 
TCGA-S9-A6TW TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U5 TCGA-S9-A6U6 
       37.84        28.70        22.95        17.62        32.61        16.08 
TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6WD TCGA-S9-A6WG TCGA-S9-A6WI 
       98.24        95.93         5.85        69.50        80.12        84.99 
TCGA-S9-A6WL TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ 
       31.10        15.91        18.61        15.16        14.07        36.13 
TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J3 
        7.92        22.32        23.51         7.13        20.02        17.03 
TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 
       15.06        13.12        28.37        10.39        99.06        30.05 
TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C4 TCGA-TM-A7C5 
       98.63        31.59        18.71        11.97        48.33        49.32 
TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84H TCGA-TM-A84I 
       34.78        48.39        16.18        59.05        30.44        28.08 
TCGA-TM-A84J TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T 
       24.16        33.24        25.38        18.61        14.93        23.80 
TCGA-TQ-A7RH TCGA-TQ-A7RW TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CD TCGA-VM-A8CH 
       15.98        26.99        43.04        30.08         7.89        23.47 
TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A8FI TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 
       37.05        16.01         8.05        13.32        43.96        39.88 
TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       43.40        45.80        46.88        37.71        20.81 

  AMP PEAK 29(19P13.2) MUTATED AMP PEAK 29(19P13.2) WILD-TYPE 
                          0.10                           0.03 
  AMP PEAK 29(19P13.2) MUTATED AMP PEAK 29(19P13.2) WILD-TYPE 
                        169.84                         211.17 
  AMP PEAK 29(19P13.2) MUTATED AMP PEAK 29(19P13.2) WILD-TYPE 
                         14.91                          14.56 
[1] "0.1 - 169.8 (14.9)" "0.0 - 211.2 (14.6)"
[1] "hr=" "1.4"
D29V2, continuous
D29V3, binary
                                cls
clus                               0   1
  AMP PEAK 29(19P13.2) MUTATED   245 113
  AMP PEAK 29(19P13.2) WILD-TYPE 325 359
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 29(19P13.2) MUTATED    245  113
  AMP PEAK 29(19P13.2) WILD-TYPE  325  359
                        clus
vv                       AMP PEAK 29(19P13.2) MUTATED
  BRAIN                                           245
  CENTRAL NERVOUS SYSTEM                          113
                        clus
vv                       AMP PEAK 29(19P13.2) WILD-TYPE
  BRAIN                                             325
  CENTRAL NERVOUS SYSTEM                            359
[1] 2 2
[1] FALSE
D29V4, binary
                                cls
clus                               0   1
  AMP PEAK 29(19P13.2) MUTATED   140 218
  AMP PEAK 29(19P13.2) WILD-TYPE 290 394
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 29(19P13.2) MUTATED    140  218
  AMP PEAK 29(19P13.2) WILD-TYPE  290  394
        clus
vv       AMP PEAK 29(19P13.2) MUTATED AMP PEAK 29(19P13.2) WILD-TYPE
  FEMALE                          140                            290
  MALE                            218                            394
[1] 2 2
[1] FALSE
D29V5, continuous
                                vv
clus                             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  AMP PEAK 29(19P13.2) MUTATED            22                            10
  AMP PEAK 29(19P13.2) WILD-TYPE         154                            17
                                vv
clus                             OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  AMP PEAK 29(19P13.2) MUTATED                 23                68
  AMP PEAK 29(19P13.2) WILD-TYPE               95               110
                                vv
clus                             TREATED PRIMARY GBM
  AMP PEAK 29(19P13.2) MUTATED                    10
  AMP PEAK 29(19P13.2) WILD-TYPE                   8
                                vv
clus                             UNTREATED PRIMARY (DE NOVO) GBM
  AMP PEAK 29(19P13.2) MUTATED                               225
  AMP PEAK 29(19P13.2) WILD-TYPE                             300
D29V6, multiclass
                                 clus
vv                                AMP PEAK 29(19P13.2) MUTATED
  ASTROCYTOMA                                               22
  GLIOBLASTOMA MULTIFORME (GBM)                             10
  OLIGOASTROCYTOMA                                          23
  OLIGODENDROGLIOMA                                         68
  TREATED PRIMARY GBM                                       10
  UNTREATED PRIMARY (DE NOVO) GBM                          225
                                 clus
vv                                AMP PEAK 29(19P13.2) WILD-TYPE
  ASTROCYTOMA                                                154
  GLIOBLASTOMA MULTIFORME (GBM)                               17
  OLIGOASTROCYTOMA                                            95
  OLIGODENDROGLIOMA                                          110
  TREATED PRIMARY GBM                                          8
  UNTREATED PRIMARY (DE NOVO) GBM                            300
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D29V7, binary
                                cls
clus                               0   1
  AMP PEAK 29(19P13.2) MUTATED   185 173
  AMP PEAK 29(19P13.2) WILD-TYPE 289 395
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 29(19P13.2) MUTATED    185  173
  AMP PEAK 29(19P13.2) WILD-TYPE  289  395
     clus
vv    AMP PEAK 29(19P13.2) MUTATED AMP PEAK 29(19P13.2) WILD-TYPE
  NO                           185                            289
  YES                          173                            395
[1] 2 2
[1] FALSE
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK 29(19P13.2) MUTATED                                  0     9
  AMP PEAK 29(19P13.2) WILD-TYPE                                1    12
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 29(19P13.2) MUTATED                          25   312
  AMP PEAK 29(19P13.2) WILD-TYPE                        39   610
D29V8, multiclass
                                  clus
vv                                 AMP PEAK 29(19P13.2) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            0
  ASIAN                                                       9
  BLACK OR AFRICAN AMERICAN                                  25
  WHITE                                                     312
                                  clus
vv                                 AMP PEAK 29(19P13.2) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              1
  ASIAN                                                        12
  BLACK OR AFRICAN AMERICAN                                    39
  WHITE                                                       610
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D29V9, binary
                                cls
clus                               0   1
  AMP PEAK 29(19P13.2) MUTATED    11 304
  AMP PEAK 29(19P13.2) WILD-TYPE  19 587
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 29(19P13.2) MUTATED     11  304
  AMP PEAK 29(19P13.2) WILD-TYPE   19  587
                        clus
vv                       AMP PEAK 29(19P13.2) MUTATED
  HISPANIC OR LATINO                               11
  NOT HISPANIC OR LATINO                          304
                        clus
vv                       AMP PEAK 29(19P13.2) WILD-TYPE
  HISPANIC OR LATINO                                 19
  NOT HISPANIC OR LATINO                            587
[1] 2 2
[1] FALSE

Clustering(30) Variable = AMP PEAK 30(19Q12) MUTATION ANALYSIS
D30V1, survival
                              sevent
clus2                            0   1
  AMP PEAK 30(19Q12) MUTATED    56 183
  AMP PEAK 30(19Q12) WILD-TYPE 424 376
  AMP PEAK 30(19Q12) MUTATED AMP PEAK 30(19Q12) WILD-TYPE 
                         239                          800 
  AMP PEAK 30(19Q12) MUTATED AMP PEAK 30(19Q12) WILD-TYPE 
                         183                          376 
$`AMP PEAK 30(19Q12) MUTATED`
TCGA-02-0007 TCGA-02-0009 TCGA-02-0015 TCGA-02-0021 TCGA-02-0023 TCGA-02-0025 
       23.18        10.59        20.61        77.65        20.12        42.74 
TCGA-02-0037 TCGA-02-0038 TCGA-02-0043 TCGA-02-0054 TCGA-02-0057 TCGA-02-0064 
        3.62        10.72        18.31         6.54        19.86        19.73 
TCGA-02-0068 TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0080 
       26.43        25.05         5.49        10.19        20.84        89.72 
TCGA-02-0089 TCGA-02-0102 TCGA-02-0106 TCGA-02-0111 TCGA-02-0113 TCGA-02-0116 
       16.96        27.02        11.67        23.18        92.65        48.95 
TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 
       16.93        17.72        10.75        13.87        14.20        15.95 
TCGA-02-0333 TCGA-02-0430 TCGA-02-2485 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 
        4.37        10.55        15.45         2.70         6.15        20.38 
TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0137 TCGA-06-0145 TCGA-06-0147 
       47.61         6.94         3.98        26.70         2.33        17.79 
TCGA-06-0148 TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 TCGA-06-0155 TCGA-06-0157 
       10.09        19.46        46.59        12.33        10.45         3.19 
TCGA-06-0158 TCGA-06-0159 TCGA-06-0164 TCGA-06-0173 TCGA-06-0174 TCGA-06-0177 
       10.82         9.44        56.91         4.47         3.22         4.18 
TCGA-06-0179 TCGA-06-0182 TCGA-06-0185 TCGA-06-0190 TCGA-06-0192 TCGA-06-0201 
       20.25         3.65        73.84        10.42        38.96         0.39 
TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 TCGA-06-0211 TCGA-06-0216 TCGA-06-0237 
        7.66         8.42         7.63        11.84        24.16        13.64 
TCGA-06-0394 TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 TCGA-06-0414 TCGA-06-0645 
       10.82         0.26        72.36         4.70        35.11         5.75 
TCGA-06-0650 TCGA-06-0743 TCGA-06-0744 TCGA-06-0747 TCGA-06-0877 TCGA-06-0879 
       23.57        26.40        46.88         2.70         5.65        40.41 
TCGA-06-1086 TCGA-06-1087 TCGA-06-1802 TCGA-06-1806 TCGA-06-2563 TCGA-06-2565 
        6.84         4.04        15.32        15.32        30.64        16.64 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 TCGA-06-6388 TCGA-06-6695 TCGA-06-6699 
        8.98         8.55         6.71         5.23         8.32         1.55 
TCGA-06-A6S0 TCGA-08-0246 TCGA-08-0347 TCGA-08-0349 TCGA-08-0352 TCGA-08-0355 
        3.12         4.18        25.71         9.80         1.28        24.56 
TCGA-08-0356 TCGA-08-0375 TCGA-08-0386 TCGA-08-0390 TCGA-08-0509 TCGA-08-0510 
       31.10        12.23        18.02        13.97        12.56         4.27 
TCGA-08-0514 TCGA-08-0518 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 
       11.08        19.33         7.27        15.98        18.41         7.56 
TCGA-12-0670 TCGA-12-0688 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 
       25.97        26.66        20.38        28.41        15.06        53.85 
TCGA-12-0778 TCGA-12-0780 TCGA-12-0819 TCGA-12-0826 TCGA-12-0829 TCGA-12-1094 
       14.93        14.86        24.79        27.78        20.58        12.23 
TCGA-12-1095 TCGA-12-1099 TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 
       15.85         4.14        15.65        25.68        14.73         6.77 
TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 
       26.93        15.22        10.95        12.69        34.92        14.53 
TCGA-14-0789 TCGA-14-0790 TCGA-14-0817 TCGA-14-0866 TCGA-14-0867 TCGA-14-0871 
       11.24        13.78         5.39        26.33         2.04        28.93 
TCGA-14-1034 TCGA-14-1402 TCGA-14-1450 TCGA-14-1454 TCGA-14-1823 TCGA-14-1829 
       15.95        32.05        58.78        30.18        17.85         7.17 
TCGA-14-2554 TCGA-14-2555 TCGA-15-1446 TCGA-15-1449 TCGA-16-0846 TCGA-16-0848 
       17.49         7.96        19.10        13.28         3.91        17.59 
TCGA-16-1055 TCGA-16-1062 TCGA-19-0955 TCGA-19-1386 TCGA-19-1392 TCGA-19-1786 
       10.29        21.24        11.77         9.07         3.65         7.17 
TCGA-19-1789 TCGA-19-2620 TCGA-19-5950 TCGA-19-5951 TCGA-19-5953 TCGA-19-5955 
        3.25         4.87        17.19         8.02         4.73         1.78 
TCGA-19-A6J4 TCGA-19-A6J5 TCGA-26-1799 TCGA-26-5139 TCGA-27-1833 TCGA-27-2518 
        3.98        28.54         9.37         1.58        24.23        24.76 
TCGA-27-2519 TCGA-27-2521 TCGA-27-2524 TCGA-27-2528 TCGA-28-1749 TCGA-28-1751 
       10.39        10.39         7.59        15.78         9.21         7.63 
TCGA-28-1752 TCGA-28-1753 TCGA-28-2502 TCGA-28-2506 TCGA-28-2513 TCGA-28-2514 
        8.48         1.22         0.66         6.74         7.30         5.26 
TCGA-28-5208 TCGA-28-5209 TCGA-28-5214 TCGA-28-5216 TCGA-28-5218 TCGA-32-1970 
       17.88        14.53        23.44        13.64         5.16        15.39 
TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1982 TCGA-32-1987 TCGA-32-2495 
        0.10        15.85        19.50         4.67        14.86        15.02 
TCGA-32-2632 TCGA-32-2638 TCGA-32-4208 TCGA-32-5222 TCGA-41-2572 TCGA-41-3393 
        8.84        25.18        21.14        19.23        13.35         4.44 
TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-4W-AA9S TCGA-4W-AA9T TCGA-74-6578 
       11.84         0.20        15.12         4.14        14.76        14.33 
TCGA-76-4934 TCGA-76-6280 TCGA-76-6656 TCGA-76-6661 TCGA-76-6663 TCGA-81-5911 
        2.53        11.38         4.83         0.23         7.73        17.72 
TCGA-87-5896 TCGA-RR-A6KA TCGA-RR-A6KC TCGA-CS-5395 TCGA-CS-6186 TCGA-CS-6188 
       26.30         6.28        20.55        21.01        17.69        23.84 
TCGA-DH-5142 TCGA-DU-5854 TCGA-DU-6402 TCGA-DU-6406 TCGA-DU-A76K TCGA-DU-A7TJ 
       30.31         8.45         7.04        16.83        11.41         0.56 
TCGA-E1-5304 TCGA-FG-6692 TCGA-FG-7643 TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A87N 
       41.13        18.44        20.09        10.72        18.38        13.58 
TCGA-HT-7472 TCGA-HT-7860 TCGA-HT-7882 TCGA-HT-8104 TCGA-KT-A7W1 TCGA-P5-A72U 
        0.03         0.49         3.72        12.23        14.40         0.16 
TCGA-QH-A6CV TCGA-QH-A6XC TCGA-S9-A6TV TCGA-S9-A6WM TCGA-TM-A7C3 
       14.53         5.03        18.77        19.86        49.45 

$`AMP PEAK 30(19Q12) WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0010 TCGA-02-0011 TCGA-02-0014 
       11.77         4.73        18.35        35.41        20.71        82.59 
TCGA-02-0016 TCGA-02-0024 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 
       87.06        53.10        24.59        12.16        90.58         2.83 
TCGA-02-0034 TCGA-02-0039 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 TCGA-02-0051 
       14.14        10.52         6.87        14.73         3.22        15.09 
TCGA-02-0052 TCGA-02-0055 TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0069 
       12.59         2.50         8.35         9.57         6.02        28.70 
TCGA-02-0079 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 
       27.25        22.72        12.62        51.32         8.81        57.76 
TCGA-02-0099 TCGA-02-0104 TCGA-02-0107 TCGA-02-0114 TCGA-02-0115 TCGA-02-0258 
        3.48        65.00        17.65        99.98        15.65        16.54 
TCGA-02-0271 TCGA-02-0281 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 
       14.47         3.98        12.23         9.90         7.73        10.62 
TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 
        7.33        15.91        25.71        25.12        10.59        12.39 
TCGA-02-0422 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 
       14.50        47.11        11.34         9.27        16.21         3.35 
TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 TCGA-02-2486 TCGA-06-0128 TCGA-06-0129 
       16.80        12.92        15.32        20.32        22.72        33.67 
TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 
       12.95        25.35        14.30        24.23        11.90         0.20 
TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0146 TCGA-06-0149 TCGA-06-0154 
       10.29         2.20        11.74        20.09         8.61        13.94 
TCGA-06-0160 TCGA-06-0162 TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 
       11.80         3.42        10.65         5.85        19.66         3.29 
TCGA-06-0171 TCGA-06-0175 TCGA-06-0176 TCGA-06-0178 TCGA-06-0184 TCGA-06-0187 
       13.12         4.04        91.00        88.14        69.90        27.22 
TCGA-06-0188 TCGA-06-0189 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0210 
       44.58        15.42         4.67         7.40         5.56         7.40 
TCGA-06-0213 TCGA-06-0214 TCGA-06-0219 TCGA-06-0221 TCGA-06-0238 TCGA-06-0240 
        0.53        15.02         0.72        19.82        13.32        20.42 
TCGA-06-0241 TCGA-06-0397 TCGA-06-0412 TCGA-06-0413 TCGA-06-0644 TCGA-06-0646 
       48.69         9.01         9.57         3.16        12.62         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0686 TCGA-06-0745 TCGA-06-0749 TCGA-06-0750 
        9.80         2.10        14.20         7.86         2.70         0.92 
TCGA-06-0875 TCGA-06-0876 TCGA-06-0878 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
       43.46        46.19         7.17        16.57        20.78        26.76 
TCGA-06-1084 TCGA-06-1800 TCGA-06-1801 TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 
       23.93        26.79        11.84        13.61        33.90         1.08 
TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2564 TCGA-06-2566 
       12.49         4.93        17.65        12.56         5.95         5.98 
TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 
        4.37         0.43        31.50        11.74         3.55         8.35 
TCGA-06-5412 TCGA-06-5413 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 
        4.54         8.81         2.73         3.75         6.15         4.57 
TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6697 
        7.79         5.39         1.48       120.56         7.36        12.85 
TCGA-06-6698 TCGA-06-6700 TCGA-06-6701 TCGA-06-A5U0 TCGA-06-A5U1 TCGA-06-A6S1 
        4.77         4.77         4.96         4.70         1.87         2.56 
TCGA-06-A7TK TCGA-06-A7TL TCGA-08-0244 TCGA-08-0245 TCGA-08-0344 TCGA-08-0345 
        5.39         5.42        22.68        37.84       115.86         1.74 
TCGA-08-0346 TCGA-08-0348 TCGA-08-0350 TCGA-08-0351 TCGA-08-0353 TCGA-08-0354 
        8.42        12.16        29.23        65.33         8.42        17.95 
TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0380 TCGA-08-0389 TCGA-08-0392 
       37.58        22.29         3.39        14.93        15.35         0.72 
TCGA-08-0512 TCGA-08-0516 TCGA-08-0517 TCGA-08-0520 TCGA-08-0521 TCGA-12-0615 
       42.15        19.59        58.68        10.75         4.80        15.35 
TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 
       14.73        12.99        34.92        10.45         7.59        94.78 
TCGA-12-0657 TCGA-12-0662 TCGA-12-0691 TCGA-12-0692 TCGA-12-0773 TCGA-12-0775 
        0.10        38.17        12.13         3.65        43.23         7.63 
TCGA-12-0776 TCGA-12-0818 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0827 
        9.73        91.76        18.48        10.62        23.51        38.76 
TCGA-12-0828 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 
        8.94       127.59         5.82         7.59        33.21        21.73 
TCGA-12-1093 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-12-3644 TCGA-12-3646 
       15.98         9.11        14.53         3.98        59.77        44.02 
TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 
       14.93         3.22         2.04        15.12        11.97         0.95 
TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0812 TCGA-14-0813 TCGA-14-0862 
        6.21        23.05         2.24         3.25         1.35         2.89 
TCGA-14-0865 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 
       16.50        19.30         0.79         1.38         1.12         3.75 
TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 
       23.11         7.10         1.15         0.92        40.96         6.67 
TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 TCGA-14-1825 TCGA-14-1827 
       12.43         0.99         1.97        17.79         7.63         5.88 
TCGA-14-3477 TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-15-1447 TCGA-16-0849 
        3.78         3.42        13.78        50.53        53.19        26.07 
TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 TCGA-16-1056 TCGA-16-1060 
       16.37         4.31        29.03         4.57        14.01         9.14 
TCGA-16-1063 TCGA-16-1460 TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 
       13.97         6.41        21.90         8.61         0.66        14.27 
TCGA-19-0964 TCGA-19-1385 TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 TCGA-19-1390 
        3.39        10.75         5.95        12.95         4.64        25.38 
TCGA-19-1787 TCGA-19-1791 TCGA-19-2619 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 
       12.66         0.13         9.67         1.08         7.53         0.16 
TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5952 
        4.08        24.23         7.00         7.04         6.64        18.90 
TCGA-19-5954 TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-19-A60I 
       12.10        22.49        14.07        16.80        14.96        17.79 
TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 TCGA-26-5132 
       10.03        13.87         9.73        31.33         7.13         9.40 
TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-6173 TCGA-26-6174 
       14.86         5.49         8.88        18.97         7.92         2.33 
TCGA-26-A7UX TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1834 TCGA-27-1835 
       19.33         5.06        16.60         9.86        40.54        21.30 
TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2523 TCGA-27-2526 TCGA-27-2527 
       30.05        14.04        11.51        16.08         2.86        14.40 
TCGA-28-1746 TCGA-28-1747 TCGA-28-1750 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 
        0.20         2.53         8.35         1.55         2.83         0.13 
TCGA-28-2509 TCGA-28-5204 TCGA-28-5207 TCGA-28-5211 TCGA-28-5213 TCGA-28-5215 
        4.77        14.93        11.28        11.77        31.27        11.01 
TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1973 TCGA-32-1976 TCGA-32-1980 
       22.68        12.76         5.42        21.07         0.49         1.18 
TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2615 TCGA-32-2616 
       12.69        16.93        12.23        20.78        15.95         7.36 
TCGA-32-2634 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-41-2571 
       22.78         3.72        12.59        19.86        10.85         0.85 
TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 
        8.94         9.53         0.99        12.46         3.45        20.91 
TCGA-74-6577 TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 
        4.34         8.22         7.50         4.80         4.54         3.09 
TCGA-76-4929 TCGA-76-4931 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 
        3.65         9.17        10.78        16.70         3.29         2.70 
TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6657 TCGA-76-6662 TCGA-76-6664 
       17.06         8.35        20.98         5.03         9.27         7.79 
TCGA-81-5910 TCGA-OX-A56R TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 
        1.61         5.92         4.70         7.69        43.89        18.15 
TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5396 TCGA-CS-5397 
       10.62        64.64        40.18         0.10         9.96         6.38 
TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 
       17.95        12.43         8.48         7.56         8.02         7.40 
TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 
        6.61       122.73        81.96        75.25        47.93        72.92 
TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 
       50.86        50.17        44.52        36.56        78.28        46.42 
TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF 
       18.84        30.21        46.72        39.78        37.45        33.57 
TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q 
       72.95        31.63        24.20        25.48        30.12         5.98 
TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X 
       31.40        27.45        27.81        29.23        14.40        18.51 
TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 
       12.10        11.24        17.88        30.74        16.18        19.96 
TCGA-DH-5141 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D 
       31.82        14.40         8.02        30.21        42.05        27.81 
TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU 
       17.19        17.19        54.25        13.12        13.38         3.45 
TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 
       18.61        18.02        14.56        17.46         6.74        13.38 
TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 
        6.81       182.33        18.94        17.49        15.16       211.17 
TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 
       52.11        22.42        49.02        75.16        46.06        65.75 
TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6407 
        1.22        87.45        11.64       133.74        19.89        94.52 
TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 
      114.08         7.96         7.73        11.47        62.96       156.23 
TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7014 
      138.28        14.99       105.21         6.54         8.84       117.40 
TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 
       90.77        30.67        26.30        10.36         7.96        94.32 
TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 
       18.94        44.02        62.01        25.91        60.30        23.31 
TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 
       41.98         2.76         5.10        23.74        14.60        20.68 
TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP 
       21.40        19.13        16.96        15.48        14.17        14.24 
TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY 
       12.59        15.12         4.96         3.65         5.65        12.20 
TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76L 
        8.65         2.70        77.98         7.23         5.98        26.76 
TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB 
        7.13        21.30        17.98       124.50        77.88        42.31 
TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5305 
       23.51         7.50        44.42        50.14        67.46        79.99 
TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YO 
       57.93       134.27        78.21        95.57       130.78        75.02 
TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 
       32.45        36.82        32.35        14.33         0.23         0.20 
TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 
       47.77        25.48        34.36        36.82        18.77        14.93 
TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7638 TCGA-FG-7641 
       24.99        23.97        15.35        17.88        22.55        20.61 
TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 
       12.95        13.68        14.24        16.01        20.09        14.96 
TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J 
       22.52        32.61        38.27        18.71        23.70        14.76 
TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y 
       17.82        16.41        15.02        16.44        22.26        28.54 
TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87Q TCGA-FN-7833 
       10.78        36.66        48.69        20.45         5.72        27.52 
TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7473 
        0.10         6.67        11.54        40.11         0.13        16.54 
TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 
        3.75        17.42         6.54        24.26         6.38        40.34 
TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 
       75.19        95.93       106.95       172.77         4.01         5.03 
TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 
       29.85        23.18       122.47         4.57        17.29         3.16 
TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 
       22.06        45.99        56.09        57.60         0.23        14.27 
TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 
        0.16        16.24         0.76        44.68         6.05        42.74 
TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 
        0.10        31.69        14.96         0.10         0.10         2.96 
TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 
       17.52         6.90        14.53        39.48        19.23        39.09 
TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 
        0.23        50.63        23.61        37.15         0.33         0.13 
TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 
        3.68         5.33        35.47        11.28        31.43         1.64 
TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 
       16.24         9.40        63.55         0.10        37.87        33.01 
TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 
        6.25         0.10         0.46         2.50         5.56        13.78 
TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS 
        0.23        29.59        34.19        28.27        15.72         0.23 
TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB 
       26.04         0.13        20.22         0.07        27.35         0.10 
TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 
        5.33         2.70        16.93         1.81        16.14        16.83 
TCGA-HT-A619 TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K 
       21.40        17.52        17.65         2.43        10.52        15.35 
TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 
       11.05         0.10        29.92        19.89         8.32        19.23 
TCGA-HW-7491 TCGA-HW-7493 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 
       40.18        35.90         4.31        21.70        21.60        19.59 
TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 
       17.82        20.35        12.76        20.81        20.71        19.00 
TCGA-IK-8125 TCGA-KT-A74X TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY 
       42.77        14.40         0.23         6.71         1.64         2.37 
TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 
        2.30         4.11         5.88         7.63         0.76         1.28 
TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 
       10.42        13.25        11.64         0.20         9.01        13.61 
TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS 
       15.16         2.53        12.62        15.85        14.04        19.33 
TCGA-QH-A6CU TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 
       14.83        13.61        12.23         2.20         9.17        10.29 
TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A86X 
       14.53        16.34        16.73         1.91        16.50        11.08 
TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X 
       12.99        88.83        94.03        32.65        59.38        30.87 
TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 
        5.46         9.90        28.08         2.07        19.59        30.67 
TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ 
       62.17        87.12        37.84        34.49        31.33        28.70 
TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 
       22.95        17.62        23.64        32.61        16.08        98.24 
TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG 
       95.93         5.85       106.39        69.50        72.59        80.12 
TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP 
       32.45        84.99        31.10        15.91        18.61        15.16 
TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ 
       14.07        36.13         7.92        22.32        23.51         7.13 
TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX 
       20.02         8.19         2.04        17.03        15.06        13.12 
TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 
       28.37        13.02       169.84        10.39        99.06        30.05 
TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C4 TCGA-TM-A7C5 
       98.63        31.59        18.71        11.97        48.33        49.32 
TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G 
       34.78        48.39        24.92        16.18        59.05        40.64 
TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O 
       30.44        28.08        24.16        40.83        24.79        33.24 
TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RH TCGA-TQ-A7RW 
       25.38        18.61        14.93        23.80        15.98        26.99 
TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE 
       43.04        30.08        13.51         0.10         7.89        35.93 
TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 
       23.47        37.05        16.01        23.21         8.05        51.06 
TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C 
       13.32        43.96        39.88        43.40        45.80        46.88 
TCGA-WY-A85D TCGA-WY-A85E 
       37.71        20.81 

  AMP PEAK 30(19Q12) MUTATED AMP PEAK 30(19Q12) WILD-TYPE 
                        0.03                         0.07 
  AMP PEAK 30(19Q12) MUTATED AMP PEAK 30(19Q12) WILD-TYPE 
                       92.65                       211.17 
  AMP PEAK 30(19Q12) MUTATED AMP PEAK 30(19Q12) WILD-TYPE 
                      13.640                       15.005 
[1] "0.0 - 92.7 (13.6)"  "0.1 - 211.2 (15.0)"
[1] "hr=" "2.2"
D30V2, continuous
D30V3, binary
                              cls
clus                             0   1
  AMP PEAK 30(19Q12) MUTATED   213  27
  AMP PEAK 30(19Q12) WILD-TYPE 357 445
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 30(19Q12) MUTATED    213   27
  AMP PEAK 30(19Q12) WILD-TYPE  357  445
                        clus
vv                       AMP PEAK 30(19Q12) MUTATED
  BRAIN                                         213
  CENTRAL NERVOUS SYSTEM                         27
                        clus
vv                       AMP PEAK 30(19Q12) WILD-TYPE
  BRAIN                                           357
  CENTRAL NERVOUS SYSTEM                          445
[1] 2 2
[1] FALSE
D30V4, binary
                              cls
clus                             0   1
  AMP PEAK 30(19Q12) MUTATED    97 143
  AMP PEAK 30(19Q12) WILD-TYPE 333 469
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 30(19Q12) MUTATED     97  143
  AMP PEAK 30(19Q12) WILD-TYPE  333  469
        clus
vv       AMP PEAK 30(19Q12) MUTATED AMP PEAK 30(19Q12) WILD-TYPE
  FEMALE                         97                          333
  MALE                          143                          469
[1] 2 2
[1] FALSE
D30V5, continuous
                              vv
clus                           ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  AMP PEAK 30(19Q12) MUTATED            14                            12
  AMP PEAK 30(19Q12) WILD-TYPE         162                            15
                              vv
clus                           OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  AMP PEAK 30(19Q12) MUTATED                  7                 6
  AMP PEAK 30(19Q12) WILD-TYPE              111               172
                              vv
clus                           TREATED PRIMARY GBM
  AMP PEAK 30(19Q12) MUTATED                     8
  AMP PEAK 30(19Q12) WILD-TYPE                  10
                              vv
clus                           UNTREATED PRIMARY (DE NOVO) GBM
  AMP PEAK 30(19Q12) MUTATED                               193
  AMP PEAK 30(19Q12) WILD-TYPE                             332
D30V6, multiclass
                                 clus
vv                                AMP PEAK 30(19Q12) MUTATED
  ASTROCYTOMA                                             14
  GLIOBLASTOMA MULTIFORME (GBM)                           12
  OLIGOASTROCYTOMA                                         7
  OLIGODENDROGLIOMA                                        6
  TREATED PRIMARY GBM                                      8
  UNTREATED PRIMARY (DE NOVO) GBM                        193
                                 clus
vv                                AMP PEAK 30(19Q12) WILD-TYPE
  ASTROCYTOMA                                              162
  GLIOBLASTOMA MULTIFORME (GBM)                             15
  OLIGOASTROCYTOMA                                         111
  OLIGODENDROGLIOMA                                        172
  TREATED PRIMARY GBM                                       10
  UNTREATED PRIMARY (DE NOVO) GBM                          332
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D30V7, binary
                              cls
clus                             0   1
  AMP PEAK 30(19Q12) MUTATED   151  89
  AMP PEAK 30(19Q12) WILD-TYPE 323 479
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 30(19Q12) MUTATED    151   89
  AMP PEAK 30(19Q12) WILD-TYPE  323  479
     clus
vv    AMP PEAK 30(19Q12) MUTATED AMP PEAK 30(19Q12) WILD-TYPE
  NO                         151                          323
  YES                         89                          479
[1] 2 2
[1] FALSE
                              vv
clus                           AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK 30(19Q12) MUTATED                                  0     8
  AMP PEAK 30(19Q12) WILD-TYPE                                1    13
                              vv
clus                           BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 30(19Q12) MUTATED                          21   203
  AMP PEAK 30(19Q12) WILD-TYPE                        43   719
D30V8, multiclass
                                  clus
vv                                 AMP PEAK 30(19Q12) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                          0
  ASIAN                                                     8
  BLACK OR AFRICAN AMERICAN                                21
  WHITE                                                   203
                                  clus
vv                                 AMP PEAK 30(19Q12) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                            1
  ASIAN                                                      13
  BLACK OR AFRICAN AMERICAN                                  43
  WHITE                                                     719
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D30V9, binary
                              cls
clus                             0   1
  AMP PEAK 30(19Q12) MUTATED     7 203
  AMP PEAK 30(19Q12) WILD-TYPE  23 688
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 30(19Q12) MUTATED      7  203
  AMP PEAK 30(19Q12) WILD-TYPE   23  688
                        clus
vv                       AMP PEAK 30(19Q12) MUTATED
  HISPANIC OR LATINO                              7
  NOT HISPANIC OR LATINO                        203
                        clus
vv                       AMP PEAK 30(19Q12) WILD-TYPE
  HISPANIC OR LATINO                               23
  NOT HISPANIC OR LATINO                          688
[1] 2 2
[1] FALSE

Clustering(31) Variable = AMP PEAK 31(19Q13.2) MUTATION ANALYSIS
D31V1, survival
                                sevent
clus2                              0   1
  AMP PEAK 31(19Q13.2) MUTATED    55 171
  AMP PEAK 31(19Q13.2) WILD-TYPE 425 388
  AMP PEAK 31(19Q13.2) MUTATED AMP PEAK 31(19Q13.2) WILD-TYPE 
                           226                            813 
  AMP PEAK 31(19Q13.2) MUTATED AMP PEAK 31(19Q13.2) WILD-TYPE 
                           171                            388 
$`AMP PEAK 31(19Q13.2) MUTATED`
TCGA-02-0009 TCGA-02-0015 TCGA-02-0021 TCGA-02-0023 TCGA-02-0025 TCGA-02-0037 
       10.59        20.61        77.65        20.12        42.74         3.62 
TCGA-02-0038 TCGA-02-0043 TCGA-02-0051 TCGA-02-0057 TCGA-02-0064 TCGA-02-0068 
       10.72        18.31        15.09        19.86        19.73        26.43 
TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0080 TCGA-02-0102 
       25.05         5.49        10.19        20.84        89.72        27.02 
TCGA-02-0106 TCGA-02-0111 TCGA-02-0113 TCGA-02-0116 TCGA-02-0260 TCGA-02-0266 
       11.67        23.18        92.65        48.95        16.93        17.72 
TCGA-02-0269 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0430 TCGA-02-2485 
       10.75        13.87        14.20        15.95        10.55        15.45 
TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 
        2.70         6.15        20.38        47.61         6.94         3.98 
TCGA-06-0137 TCGA-06-0145 TCGA-06-0147 TCGA-06-0148 TCGA-06-0150 TCGA-06-0151 
       26.70         2.33        17.79        10.09        19.46        46.59 
TCGA-06-0152 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0164 
       12.33        10.45         3.19        10.82         9.44        56.91 
TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0177 TCGA-06-0179 TCGA-06-0182 
        4.47         3.22         4.04         4.18        20.25         3.65 
TCGA-06-0185 TCGA-06-0190 TCGA-06-0192 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 
       73.84        10.42        38.96         0.39         7.66         8.42 
TCGA-06-0209 TCGA-06-0211 TCGA-06-0216 TCGA-06-0237 TCGA-06-0394 TCGA-06-0402 
        7.63        11.84        24.16        13.64        10.82         0.26 
TCGA-06-0409 TCGA-06-0410 TCGA-06-0414 TCGA-06-0645 TCGA-06-0650 TCGA-06-0743 
       72.36         4.70        35.11         5.75        23.57        26.40 
TCGA-06-0744 TCGA-06-0877 TCGA-06-0879 TCGA-06-1086 TCGA-06-1087 TCGA-06-1802 
       46.88         5.65        40.41         6.84         4.04        15.32 
TCGA-06-1806 TCGA-06-2563 TCGA-06-2565 TCGA-06-5414 TCGA-06-5415 TCGA-06-6388 
       15.32        30.64        16.64         8.98         8.55         5.23 
TCGA-06-6695 TCGA-06-6698 TCGA-06-6699 TCGA-06-A6S0 TCGA-08-0246 TCGA-08-0347 
        8.32         4.77         1.55         3.12         4.18        25.71 
TCGA-08-0352 TCGA-08-0355 TCGA-08-0356 TCGA-08-0375 TCGA-08-0390 TCGA-08-0509 
        1.28        24.56        31.10        12.23        13.97        12.56 
TCGA-08-0510 TCGA-08-0514 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-12-0670 
        4.27        11.08         7.27        15.98        18.41        25.97 
TCGA-12-0688 TCGA-12-0691 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 
       26.66        12.13        20.38        28.41        15.06        53.85 
TCGA-12-0778 TCGA-12-0780 TCGA-12-0819 TCGA-12-0826 TCGA-12-0829 TCGA-12-1094 
       14.93        14.86        24.79        27.78        20.58        12.23 
TCGA-12-1099 TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 TCGA-12-3648 TCGA-12-3649 
        4.14        25.68        14.73         6.77        26.93        15.22 
TCGA-12-3650 TCGA-12-3652 TCGA-12-3653 TCGA-14-0783 TCGA-14-0789 TCGA-14-0790 
       10.95        34.92        14.53         6.21        11.24        13.78 
TCGA-14-0817 TCGA-14-0866 TCGA-14-0867 TCGA-14-0871 TCGA-14-1034 TCGA-14-1395 
        5.39        26.33         2.04        28.93        15.95         1.38 
TCGA-14-1402 TCGA-14-1450 TCGA-14-1454 TCGA-14-1823 TCGA-14-1829 TCGA-14-2554 
       32.05        58.78        30.18        17.85         7.17        17.49 
TCGA-14-2555 TCGA-14-3477 TCGA-15-1446 TCGA-16-0846 TCGA-16-0848 TCGA-16-1055 
        7.96         3.78        19.10         3.91        17.59        10.29 
TCGA-16-1062 TCGA-19-0955 TCGA-19-1386 TCGA-19-1789 TCGA-19-2620 TCGA-19-5950 
       21.24        11.77         9.07         3.25         4.87        17.19 
TCGA-19-5953 TCGA-19-5955 TCGA-19-A6J5 TCGA-26-1799 TCGA-26-5133 TCGA-26-5139 
        4.73         1.78        28.54         9.37        14.86         1.58 
TCGA-27-1833 TCGA-27-2518 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-28-1749 
       24.23        24.76        10.39        16.08         7.59         9.21 
TCGA-28-1751 TCGA-28-1752 TCGA-28-2502 TCGA-28-2506 TCGA-28-2513 TCGA-28-2514 
        7.63         8.48         0.66         6.74         7.30         5.26 
TCGA-28-5208 TCGA-28-5209 TCGA-28-5214 TCGA-28-5216 TCGA-28-5218 TCGA-28-6450 
       17.88        14.53        23.44        13.64         5.16         5.42 
TCGA-32-1970 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1982 TCGA-32-2495 
       15.39         0.10        15.85        19.50         4.67        15.02 
TCGA-32-2632 TCGA-32-2638 TCGA-32-5222 TCGA-41-2572 TCGA-41-3393 TCGA-41-3915 
        8.84        25.18        19.23        13.35         4.44        11.84 
TCGA-4W-AA9S TCGA-4W-AA9T TCGA-74-6578 TCGA-76-4934 TCGA-76-6280 TCGA-76-6656 
        4.14        14.76        14.33         2.53        11.38         4.83 
TCGA-76-6661 TCGA-76-6663 TCGA-81-5911 TCGA-87-5896 TCGA-RR-A6KA TCGA-RR-A6KC 
        0.23         7.73        17.72        26.30         6.28        20.55 
TCGA-CS-4942 TCGA-CS-4944 TCGA-CS-5395 TCGA-CS-6186 TCGA-CS-6188 TCGA-DU-5854 
       43.89        10.62        21.01        17.69        23.84         8.45 
TCGA-DU-6402 TCGA-DU-6406 TCGA-DU-A76K TCGA-DU-A7TJ TCGA-FG-6692 TCGA-FG-7643 
        7.04        16.83        11.41         0.56        18.44        20.09 
TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A87N TCGA-HT-7689 TCGA-HT-7860 TCGA-HT-7882 
       10.72        18.38        13.58        14.96         0.49         3.72 
TCGA-HT-8104 TCGA-HT-A5RA TCGA-KT-A7W1 TCGA-P5-A72U TCGA-QH-A6CV TCGA-QH-A6XC 
       12.23        27.35        14.40         0.16        14.53         5.03 
TCGA-S9-A6WM TCGA-S9-A89V TCGA-TM-A7C3 TCGA-TM-A84B 
       19.86        18.71        49.45        24.92 

$`AMP PEAK 31(19Q13.2) WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0010 TCGA-02-0011 
       11.77         4.73        18.35        23.18        35.41        20.71 
TCGA-02-0014 TCGA-02-0016 TCGA-02-0024 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 
       82.59        87.06        53.10        24.59        12.16        90.58 
TCGA-02-0033 TCGA-02-0034 TCGA-02-0039 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 
        2.83        14.14        10.52         6.87        14.73         3.22 
TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 
       12.59         6.54         2.50         8.35         9.57         6.02 
TCGA-02-0069 TCGA-02-0079 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 
       28.70        27.25        22.72        12.62        51.32         8.81 
TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0104 TCGA-02-0107 TCGA-02-0114 
       57.76        16.96         3.48        65.00        17.65        99.98 
TCGA-02-0115 TCGA-02-0258 TCGA-02-0271 TCGA-02-0281 TCGA-02-0317 TCGA-02-0321 
       15.65        16.54        14.47         3.98        12.23         9.90 
TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 
        7.73        10.62         7.33        15.91        25.71         4.37 
TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0432 TCGA-02-0440 
       25.12        10.59        12.39        14.50        47.11        11.34 
TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 
        9.27        16.21         3.35        16.80        12.92        15.32 
TCGA-02-2486 TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 
       20.32        22.72        33.67        12.95        25.35        14.30 
TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 
       24.23        11.90         0.20        10.29         2.20        11.74 
TCGA-06-0146 TCGA-06-0149 TCGA-06-0154 TCGA-06-0160 TCGA-06-0162 TCGA-06-0165 
       20.09         8.61        13.94        11.80         3.42        10.65 
TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0176 TCGA-06-0178 
        5.85        19.66         3.29        13.12        91.00        88.14 
TCGA-06-0184 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0194 TCGA-06-0195 
       69.90        27.22        44.58        15.42         4.67         7.40 
TCGA-06-0197 TCGA-06-0210 TCGA-06-0213 TCGA-06-0214 TCGA-06-0219 TCGA-06-0221 
        5.56         7.40         0.53        15.02         0.72        19.82 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0397 TCGA-06-0412 TCGA-06-0413 
       13.32        20.42        48.69         9.01         9.57         3.16 
TCGA-06-0644 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0686 TCGA-06-0745 
       12.62         5.75         9.80         2.10        14.20         7.86 
TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0878 
        2.70         2.70         0.92        43.46        46.19         7.17 
TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1800 TCGA-06-1801 
       16.57        20.78        26.76        23.93        26.79        11.84 
TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.61        33.90         1.08        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2564 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 
       12.56         5.95         5.98         4.37         0.43        31.50 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5416 
       11.74         3.55         8.35         4.54         8.81         6.71 
TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6389 TCGA-06-6390 
        2.73         3.75         6.15         4.57         7.79         5.39 
TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6697 TCGA-06-6700 TCGA-06-6701 
        1.48       120.56         7.36        12.85         4.77         4.96 
TCGA-06-A5U0 TCGA-06-A5U1 TCGA-06-A6S1 TCGA-06-A7TK TCGA-06-A7TL TCGA-08-0244 
        4.70         1.87         2.56         5.39         5.42        22.68 
TCGA-08-0245 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0348 TCGA-08-0349 
       37.84       115.86         1.74         8.42        12.16         9.80 
TCGA-08-0350 TCGA-08-0351 TCGA-08-0353 TCGA-08-0354 TCGA-08-0357 TCGA-08-0358 
       29.23        65.33         8.42        17.95        37.58        22.29 
TCGA-08-0359 TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 TCGA-08-0392 TCGA-08-0512 
        3.39        14.93        18.02        15.35         0.72        42.15 
TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0531 
       19.59        58.68        19.33        10.75         4.80         7.56 
TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0654 
       15.35        14.73        12.99        34.92        10.45         7.59 
TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0692 TCGA-12-0773 TCGA-12-0775 
       94.78         0.10        38.17         3.65        43.23         7.63 
TCGA-12-0776 TCGA-12-0818 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0827 
        9.73        91.76        18.48        10.62        23.51        38.76 
TCGA-12-0828 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 
        8.94       127.59         5.82         7.59        33.21        21.73 
TCGA-12-1093 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-12-1598 
       15.98        15.85         9.11        14.53         3.98        15.65 
TCGA-12-3644 TCGA-12-3646 TCGA-12-3651 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 
       59.77        44.02        12.69        14.93         3.22         2.04 
TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0812 
       15.12        11.97         0.95        23.05         2.24         3.25 
TCGA-14-0813 TCGA-14-0862 TCGA-14-0865 TCGA-14-1037 TCGA-14-1043 TCGA-14-1396 
        1.35         2.89        16.50        19.30         0.79         1.12 
TCGA-14-1401 TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 TCGA-14-1455 TCGA-14-1456 
        3.75        23.11         7.10         1.15         0.92        40.96 
TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 TCGA-14-1825 
        6.67        12.43         0.99         1.97        17.79         7.63 
TCGA-14-1827 TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-15-1447 TCGA-15-1449 
        5.88         3.42        13.78        50.53        53.19        13.28 
TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 TCGA-16-1056 
       26.07        16.37         4.31        29.03         4.57        14.01 
TCGA-16-1060 TCGA-16-1063 TCGA-16-1460 TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 
        9.14        13.97         6.41        21.90         8.61         0.66 
TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 
       14.27         3.39        10.75         5.95        12.95         4.64 
TCGA-19-1390 TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 TCGA-19-1791 TCGA-19-2619 
       25.38         3.65         7.17        12.66         0.13         9.67 
TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 
        1.08         7.53         0.16         4.08        24.23         7.00 
TCGA-19-4065 TCGA-19-5947 TCGA-19-5951 TCGA-19-5952 TCGA-19-5954 TCGA-19-5956 
        7.04         6.64         8.02        18.90        12.10        22.49 
TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-19-A60I TCGA-19-A6J4 TCGA-26-1438 
       14.07        16.80        14.96        17.79         3.98        10.03 
TCGA-26-1439 TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 TCGA-26-5132 TCGA-26-5134 
       13.87         9.73        31.33         7.13         9.40         5.49 
TCGA-26-5135 TCGA-26-5136 TCGA-26-6173 TCGA-26-6174 TCGA-26-A7UX TCGA-27-1830 
        8.88        18.97         7.92         2.33        19.33         5.06 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 
       16.60         9.86        40.54        21.30        30.05        14.04 
TCGA-27-1838 TCGA-27-2519 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 
       11.51        10.39         2.86        14.40        15.78         0.20 
TCGA-28-1747 TCGA-28-1750 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 
        2.53         8.35         1.22         1.55         2.83         0.13 
TCGA-28-2509 TCGA-28-5204 TCGA-28-5207 TCGA-28-5211 TCGA-28-5213 TCGA-28-5215 
        4.77        14.93        11.28        11.77        31.27        11.01 
TCGA-28-5219 TCGA-28-5220 TCGA-32-1973 TCGA-32-1976 TCGA-32-1980 TCGA-32-1986 
       22.68        12.76        21.07         0.49         1.18        12.69 
TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2615 TCGA-32-2616 
       14.86        16.93        12.23        20.78        15.95         7.36 
TCGA-32-2634 TCGA-32-4208 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 
       22.78        21.14         3.72        12.59        19.86        10.85 
TCGA-41-2571 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-4097 TCGA-41-5651 
        0.85         8.94         9.53         0.99         0.20        15.12 
TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6581 TCGA-74-6584 
       12.46         3.45        20.91         4.34         8.22         7.50 
TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4935 
        4.80         4.54         3.09         3.65         9.17        10.78 
TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 
       16.70         3.29         2.70        17.06         8.35        20.98 
TCGA-76-6657 TCGA-76-6662 TCGA-76-6664 TCGA-81-5910 TCGA-OX-A56R TCGA-CS-4938 
        5.03         9.27         7.79         1.61         5.92         4.70 
TCGA-CS-4941 TCGA-CS-4943 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5396 
        7.69        18.15        64.64        40.18         0.10         9.96 
TCGA-CS-5397 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 
        6.38        17.95        12.43         8.48         7.56         8.02 
TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 
        7.40         6.61       122.73        81.96        75.25        47.93 
TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 
       72.92        50.86        50.17        44.52        36.56        78.28 
TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE 
       46.42        18.84        30.21        46.72        39.78        37.45 
TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P 
       33.57        72.95        31.63        24.20        25.48        30.12 
TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W 
        5.98        31.40        27.45        27.81        29.23        14.40 
TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P 
       18.51        12.10        11.24        17.88        30.74        16.18 
TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 
       19.96        31.82        30.31        14.40         8.02        30.21 
TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US 
       42.05        27.81        17.19        17.19        54.25        13.12 
TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 
       13.38         3.45        18.61        18.02        14.56        17.46 
TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 
        6.74        13.38         6.81       182.33        18.94        17.49 
TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 
       15.16       211.17        52.11        22.42        49.02        75.16 
TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6403 TCGA-DU-6404 
       46.06        65.75         1.22        87.45        11.64       133.74 
TCGA-DU-6405 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 
       19.89        94.52       114.08         7.96         7.73        11.47 
TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 
       62.96       156.23       138.28        14.99       105.21         6.54 
TCGA-DU-7013 TCGA-DU-7014 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 
        8.84       117.40        90.77        30.67        26.30        10.36 
TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 
        7.96        94.32        18.94        44.02        62.01        25.91 
TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 
       60.30        23.31        41.98         2.76         5.10        23.74 
TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 
       14.60        20.68        21.40        19.13        16.96        15.48 
TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU 
       14.17        14.24        12.59        15.12         4.96         3.65 
TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 
        5.65        12.20         8.65         2.70        77.98         7.23 
TCGA-DU-A6S8 TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 
        5.98        26.76         7.13        21.30        17.98       124.50 
TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-E1-5302 
       77.88        42.31        23.51         7.50        44.42        50.14 
TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 
       67.46        41.13        79.99        57.93       134.27        78.21 
TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YO TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7Z6 
       95.57       130.78        75.02        32.45        36.82        32.35 
TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 
       14.33         0.23         0.20        47.77        25.48        34.36 
TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-7634 
       36.82        18.77        14.93        24.99        23.97        15.35 
TCGA-FG-7636 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 
       17.88        22.55        20.61        12.95        13.68        14.24 
TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT 
       16.01        20.09        14.96        22.52        32.61        38.27 
TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ 
       18.71        23.70        14.76        17.82        16.41        15.02 
TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 
       16.44        22.26        28.54        10.78        36.66        48.69 
TCGA-FG-A713 TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 
       20.45         5.72        27.52         0.10         6.67        11.54 
TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 
       40.11         0.13         0.03        16.54         3.75        17.42 
TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 
        6.54        24.26         6.38        40.34        75.19        95.93 
TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 
      106.95       172.77         4.01         5.03        29.85        23.18 
TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 
      122.47         4.57        17.29         3.16        22.06        45.99 
TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 
       56.09        57.60         0.23        14.27         0.16        16.24 
TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 
        0.76        44.68         6.05        42.74         0.10        31.69 
TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 
        0.10         0.10         2.96        17.52         6.90        14.53 
TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7873 
       39.48        19.23        39.09         0.23        50.63        23.61 
TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 
       37.15         0.33         0.13         3.68         5.33        35.47 
TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 
       11.28        31.43         1.64        16.24         9.40        63.55 
TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 
        0.10        37.87        33.01         6.25         0.10         0.46 
TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 
        2.50         5.56        13.78         0.23        29.59        34.19 
TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 
       28.27        15.72         0.23        26.04         0.13        20.22 
TCGA-HT-A5R9 TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 
        0.07         0.10         5.33         2.70        16.93         1.81 
TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H 
       16.14        16.83        21.40        17.52        17.65         2.43 
TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 
       10.52        15.35        11.05         0.10        29.92        19.89 
TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7493 TCGA-HW-7495 TCGA-HW-8319 
        8.32        19.23        40.18        35.90         4.31        21.70 
TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL 
       21.60        19.59        17.82        20.35        12.76        20.81 
TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-P5-A5EV TCGA-P5-A5EW 
       20.71        19.00        42.77        14.40         0.23         6.71 
TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 
        1.64         2.37         2.30         4.11         5.88         7.63 
TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 
        0.76         1.28        10.42        13.25        11.64         0.20 
TCGA-P5-A731 TCGA-P5-A733 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X 
        9.01        13.61        15.16         2.53        12.62        15.85 
TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY 
       14.04        19.33        14.83        13.61        12.23         2.20 
TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 
        9.17        10.29        14.53        16.34        16.73         1.91 
TCGA-QH-A6XA TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO 
       16.50        11.08        12.99        88.83        94.03        32.65 
TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 
       59.38        30.87         5.46         9.90        28.08         2.07 
TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW 
       19.59        30.67        62.17        87.12        18.77        37.84 
TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 
       34.49        31.33        28.70        22.95        17.62        23.64 
TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB 
       32.61        16.08        98.24        95.93         5.85       106.39 
TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL 
       69.50        72.59        80.12        32.45        84.99        31.10 
TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS 
       15.91        18.61        15.16        14.07        36.13         7.92 
TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 
       22.32        23.51         7.13        20.02         8.19         2.04 
TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 
       17.03        15.06        13.12        28.37        13.02       169.84 
TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89Z 
       10.39        99.06        30.05        98.63        31.59        11.97 
TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84C TCGA-TM-A84F 
       48.33        49.32        34.78        48.39        16.18        59.05 
TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M 
       40.64        30.44        28.08        24.16        40.83        24.79 
TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RH 
       33.24        25.38        18.61        14.93        23.80        15.98 
TCGA-TQ-A7RW TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD 
       26.99        43.04        30.08        13.51         0.10         7.89 
TCGA-VM-A8CE TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI 
       35.93        23.47        37.05        16.01        23.21         8.05 
TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B 
       51.06        13.32        43.96        39.88        43.40        45.80 
TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       46.88        37.71        20.81 

  AMP PEAK 31(19Q13.2) MUTATED AMP PEAK 31(19Q13.2) WILD-TYPE 
                          0.10                           0.03 
  AMP PEAK 31(19Q13.2) MUTATED AMP PEAK 31(19Q13.2) WILD-TYPE 
                         92.65                         211.17 
  AMP PEAK 31(19Q13.2) MUTATED AMP PEAK 31(19Q13.2) WILD-TYPE 
                        13.825                         14.990 
[1] "0.1 - 92.7 (13.8)"  "0.0 - 211.2 (15.0)"
[1] "hr=" "2.1"
D31V2, continuous
D31V3, binary
                                cls
clus                               0   1
  AMP PEAK 31(19Q13.2) MUTATED   198  29
  AMP PEAK 31(19Q13.2) WILD-TYPE 372 443
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 31(19Q13.2) MUTATED    198   29
  AMP PEAK 31(19Q13.2) WILD-TYPE  372  443
                        clus
vv                       AMP PEAK 31(19Q13.2) MUTATED
  BRAIN                                           198
  CENTRAL NERVOUS SYSTEM                           29
                        clus
vv                       AMP PEAK 31(19Q13.2) WILD-TYPE
  BRAIN                                             372
  CENTRAL NERVOUS SYSTEM                            443
[1] 2 2
[1] FALSE
D31V4, binary
                                cls
clus                               0   1
  AMP PEAK 31(19Q13.2) MUTATED    90 137
  AMP PEAK 31(19Q13.2) WILD-TYPE 340 475
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 31(19Q13.2) MUTATED     90  137
  AMP PEAK 31(19Q13.2) WILD-TYPE  340  475
        clus
vv       AMP PEAK 31(19Q13.2) MUTATED AMP PEAK 31(19Q13.2) WILD-TYPE
  FEMALE                           90                            340
  MALE                            137                            475
[1] 2 2
[1] FALSE
D31V5, continuous
                                vv
clus                             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  AMP PEAK 31(19Q13.2) MUTATED            17                            11
  AMP PEAK 31(19Q13.2) WILD-TYPE         159                            16
                                vv
clus                             OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  AMP PEAK 31(19Q13.2) MUTATED                  6                 6
  AMP PEAK 31(19Q13.2) WILD-TYPE              112               172
                                vv
clus                             TREATED PRIMARY GBM
  AMP PEAK 31(19Q13.2) MUTATED                     6
  AMP PEAK 31(19Q13.2) WILD-TYPE                  12
                                vv
clus                             UNTREATED PRIMARY (DE NOVO) GBM
  AMP PEAK 31(19Q13.2) MUTATED                               181
  AMP PEAK 31(19Q13.2) WILD-TYPE                             344
D31V6, multiclass
                                 clus
vv                                AMP PEAK 31(19Q13.2) MUTATED
  ASTROCYTOMA                                               17
  GLIOBLASTOMA MULTIFORME (GBM)                             11
  OLIGOASTROCYTOMA                                           6
  OLIGODENDROGLIOMA                                          6
  TREATED PRIMARY GBM                                        6
  UNTREATED PRIMARY (DE NOVO) GBM                          181
                                 clus
vv                                AMP PEAK 31(19Q13.2) WILD-TYPE
  ASTROCYTOMA                                                159
  GLIOBLASTOMA MULTIFORME (GBM)                               16
  OLIGOASTROCYTOMA                                           112
  OLIGODENDROGLIOMA                                          172
  TREATED PRIMARY GBM                                         12
  UNTREATED PRIMARY (DE NOVO) GBM                            344
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D31V7, binary
                                cls
clus                               0   1
  AMP PEAK 31(19Q13.2) MUTATED   139  88
  AMP PEAK 31(19Q13.2) WILD-TYPE 335 480
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 31(19Q13.2) MUTATED    139   88
  AMP PEAK 31(19Q13.2) WILD-TYPE  335  480
     clus
vv    AMP PEAK 31(19Q13.2) MUTATED AMP PEAK 31(19Q13.2) WILD-TYPE
  NO                           139                            335
  YES                           88                            480
[1] 2 2
[1] FALSE
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK 31(19Q13.2) MUTATED                                  0     7
  AMP PEAK 31(19Q13.2) WILD-TYPE                                1    14
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 31(19Q13.2) MUTATED                          21   192
  AMP PEAK 31(19Q13.2) WILD-TYPE                        43   730
D31V8, multiclass
                                  clus
vv                                 AMP PEAK 31(19Q13.2) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            0
  ASIAN                                                       7
  BLACK OR AFRICAN AMERICAN                                  21
  WHITE                                                     192
                                  clus
vv                                 AMP PEAK 31(19Q13.2) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              1
  ASIAN                                                        14
  BLACK OR AFRICAN AMERICAN                                    43
  WHITE                                                       730
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D31V9, binary
                                cls
clus                               0   1
  AMP PEAK 31(19Q13.2) MUTATED     6 187
  AMP PEAK 31(19Q13.2) WILD-TYPE  24 704
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 31(19Q13.2) MUTATED      6  187
  AMP PEAK 31(19Q13.2) WILD-TYPE   24  704
                        clus
vv                       AMP PEAK 31(19Q13.2) MUTATED
  HISPANIC OR LATINO                                6
  NOT HISPANIC OR LATINO                          187
                        clus
vv                       AMP PEAK 31(19Q13.2) WILD-TYPE
  HISPANIC OR LATINO                                 24
  NOT HISPANIC OR LATINO                            704
[1] 2 2
[1] FALSE

Clustering(32) Variable = AMP PEAK 32(XP11.21) MUTATION ANALYSIS
D32V1, survival
                                sevent
clus2                              0   1
  AMP PEAK 32(XP11.21) MUTATED    59  39
  AMP PEAK 32(XP11.21) WILD-TYPE 421 520
  AMP PEAK 32(XP11.21) MUTATED AMP PEAK 32(XP11.21) WILD-TYPE 
                            98                            941 
  AMP PEAK 32(XP11.21) MUTATED AMP PEAK 32(XP11.21) WILD-TYPE 
                            39                            520 
$`AMP PEAK 32(XP11.21) MUTATED`
TCGA-02-0010 TCGA-02-0011 TCGA-02-0051 TCGA-02-0058 TCGA-02-0266 TCGA-02-0271 
       35.41        20.71        15.09         8.35        17.72        14.47 
TCGA-02-0333 TCGA-02-2483 TCGA-06-0151 TCGA-06-0159 TCGA-06-0162 TCGA-06-0221 
        4.37        15.32        46.59         9.44         3.42        19.82 
TCGA-06-0743 TCGA-06-0875 TCGA-06-1801 TCGA-06-2564 TCGA-06-2570 TCGA-06-6698 
       26.40        43.46        11.84         5.95        31.50         4.77 
TCGA-06-A7TL TCGA-08-0355 TCGA-12-0773 TCGA-12-1090 TCGA-12-1098 TCGA-14-0871 
        5.42        24.56        43.23         7.59         3.98        28.93 
TCGA-14-1455 TCGA-19-1388 TCGA-19-5947 TCGA-26-1440 TCGA-26-1799 TCGA-28-5209 
        0.92        12.95         6.64         9.73         9.37        14.53 
TCGA-28-5218 TCGA-32-1973 TCGA-32-2632 TCGA-32-4210 TCGA-CS-4938 TCGA-CS-6665 
        5.16        21.07         8.84         3.72         4.70        12.43 
TCGA-CS-6667 TCGA-DB-5277 TCGA-DB-5281 TCGA-DB-A75L TCGA-DH-5142 TCGA-DH-A66B 
        7.56        50.86        78.28        11.24        30.31        42.05 
TCGA-DU-5871 TCGA-DU-6396 TCGA-DU-6401 TCGA-DU-6407 TCGA-DU-6542 TCGA-DU-7007 
       18.94        75.16        87.45        94.52         7.73        62.96 
TCGA-DU-7010 TCGA-DU-7014 TCGA-DU-8167 TCGA-DU-A5TP TCGA-DU-A5TS TCGA-DU-A5TT 
       14.99       117.40        15.48        14.24        15.12         4.96 
TCGA-DU-A5TU TCGA-DU-A5TW TCGA-E1-5302 TCGA-E1-5307 TCGA-E1-5318 TCGA-E1-5322 
        3.65         5.65        50.14        57.93        78.21       130.78 
TCGA-FG-7636 TCGA-FG-8185 TCGA-FG-A4MY TCGA-FG-A713 TCGA-HT-7476 TCGA-HT-7477 
       17.88        14.24        23.70        20.45         6.54        24.26 
TCGA-HT-7609 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7855 TCGA-HT-7857 TCGA-HT-7902 
       45.99        31.69        14.96        19.23         0.23        31.43 
TCGA-HT-8013 TCGA-HT-8104 TCGA-HT-8106 TCGA-HT-8563 TCGA-HT-A616 TCGA-HT-A618 
       63.55        12.23         0.10        28.27         1.81        16.83 
TCGA-HT-A74J TCGA-HT-A74O TCGA-HW-7493 TCGA-HW-8321 TCGA-P5-A5EZ TCGA-P5-A72W 
       10.52         0.10        35.90        19.59         2.30        10.42 
TCGA-P5-A733 TCGA-QH-A65S TCGA-QH-A6CV TCGA-S9-A6TS TCGA-S9-A7IZ TCGA-S9-A7QX 
       13.61         2.53        14.53        62.17         7.13        13.12 
TCGA-S9-A89V TCGA-TM-A84Q TCGA-VM-A8C8 TCGA-VV-A86M TCGA-WY-A858 TCGA-WY-A859 
       18.71        25.38        43.04        16.01        43.96        39.88 
TCGA-WY-A85B TCGA-WY-A85E 
       45.80        20.81 

$`AMP PEAK 32(XP11.21) WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0014 
       11.77         4.73        18.35        23.18        10.59        82.59 
TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 TCGA-02-0025 
       20.61        87.06        77.65        20.12        53.10        42.74 
TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 
       24.59        12.16        90.58         2.83        14.14         3.62 
TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 
       10.72        10.52        18.31         6.87        14.73         3.22 
TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 TCGA-02-0059 TCGA-02-0060 
       12.59         6.54         2.50        19.86         9.57         6.02 
TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 
       19.73        26.43        28.70        25.05         5.49        10.19 
TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 
       20.84        27.25        89.72        22.72        12.62        51.32 
TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 
        8.81        57.76        16.96         3.48        27.02        65.00 
TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 
       11.67        17.65        23.18        92.65        99.98        15.65 
TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0269 TCGA-02-0281 TCGA-02-0285 
       48.95        16.54        16.93        10.75         3.98        13.87 
TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 
       14.20        15.95        12.23         9.90         7.73        10.62 
TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 
        7.33        15.91        25.71        25.12        10.59        12.39 
TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 
       14.50        10.55        47.11        11.34         9.27        16.21 
TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 
        3.35        16.80        12.92        15.45        20.32         2.70 
TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 
        6.15        20.38        47.61         6.94         3.98        22.72 
TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 
       33.67        12.95        25.35        14.30        26.70        24.23 
TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 
       11.90         0.20        10.29         2.20        11.74         2.33 
TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0152 
       20.09        17.79        10.09         8.61        19.46        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0160 TCGA-06-0164 
       13.94        10.45         3.19        10.82        11.80        56.91 
TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 
       10.65         5.85        19.66         3.29        13.12         4.47 
TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 
        3.22         4.04        91.00         4.18        88.14        20.25 
TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 
        3.65        69.90        73.84        27.22        44.58        15.42 
TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 
       10.42        38.96         4.67         7.40         5.56         0.39 
TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 
        7.66         8.42         7.63         7.40        11.84         0.53 
TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 
       15.02        24.16         0.72        13.64        13.32        20.42 
TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 
       48.69        10.82         9.01         0.26        72.36         4.70 
TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
        9.57         3.16        35.11        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0744 TCGA-06-0745 
        9.80         2.10        23.57        14.20        46.88         7.86 
TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 
        2.70         2.70         0.92        46.19         5.65         7.17 
TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 
       40.41        16.57        20.78        26.76        23.93         6.84 
TCGA-06-1087 TCGA-06-1800 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-1806 
        4.04        26.79        15.32        13.61        33.90        15.32 
TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 
        1.08        12.49         4.93        17.65        12.56        30.64 
TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 TCGA-06-5408 TCGA-06-5410 
       16.64         5.98         4.37         0.43        11.74         3.55 
TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 
        8.35         4.54         8.81         8.98         8.55         6.71 
TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 
        2.73         3.75         6.15         4.57         5.23         7.79 
TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 
        5.39         1.48       120.56         7.36         8.32        12.85 
TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-06-A5U0 TCGA-06-A5U1 TCGA-06-A6S0 
        1.55         4.77         4.96         4.70         1.87         3.12 
TCGA-06-A6S1 TCGA-06-A7TK TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 TCGA-08-0344 
        2.56         5.39        22.68        37.84         4.18       115.86 
TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 
        1.74         8.42        25.71        12.16         9.80        29.23 
TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0356 TCGA-08-0357 
       65.33         1.28         8.42        17.95        31.10        37.58 
TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 
       22.29         3.39        12.23        14.93        18.02        15.35 
TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 
       13.97         0.72        12.56         4.27        42.15        11.08 
TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 
       19.59        58.68        19.33        10.75         4.80         7.27 
TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 
       15.98        18.41         7.56        15.35        14.73        12.99 
TCGA-12-0619 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 
       34.92        10.45         7.59        94.78         0.10        38.17 
TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 
       25.97        26.66        12.13         3.65        20.38        28.41 
TCGA-12-0769 TCGA-12-0772 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 
       15.06        53.85         7.63         9.73        14.93        14.86 
TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 
       91.76        24.79        18.48        10.62        23.51        27.78 
TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1091 
       38.76         8.94        20.58       127.59         5.82        33.21 
TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 
       21.73        15.98        12.23        15.85         9.11        14.53 
TCGA-12-1099 TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 
        4.14        15.65        25.68        14.73         6.77        59.77 
TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 
       44.02        26.93        15.22        10.95        12.69        34.92 
TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 
       14.53        14.93         3.22         2.04        15.12        11.97 
TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 
        0.95         6.21        23.05         2.24        11.24        13.78 
TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 
        3.25         1.35         5.39         2.89        16.50        26.33 
TCGA-14-0867 TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 
        2.04        15.95        19.30         0.79         1.38         1.12 
TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 
        3.75        32.05        58.78        23.11         7.10         1.15 
TCGA-14-1454 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 
       30.18        40.96         6.67        12.43         0.99         1.97 
TCGA-14-1821 TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 
       17.79        17.85         7.63         5.88         7.17        17.49 
TCGA-14-2555 TCGA-14-3477 TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 
        7.96         3.78         3.42        13.78        50.53        19.10 
TCGA-15-1447 TCGA-15-1449 TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 
       53.19        13.28         3.91        17.59        26.07        16.37 
TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 
        4.31        29.03         4.57        10.29        14.01         9.14 
TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 
       21.24        13.97         6.41        11.77        21.90         8.61 
TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 
        0.66        14.27         3.39        10.75         9.07         5.95 
TCGA-19-1389 TCGA-19-1390 TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 
        4.64        25.38         3.65         7.17        12.66         3.25 
TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 
        0.13         9.67         4.87         1.08         7.53         0.16 
TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 TCGA-19-5950 TCGA-19-5951 
        4.08        24.23         7.00         7.04        17.19         8.02 
TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 
       18.90         4.73        12.10         1.78        22.49        14.07 
TCGA-19-5959 TCGA-19-5960 TCGA-19-A60I TCGA-19-A6J4 TCGA-19-A6J5 TCGA-26-1438 
       16.80        14.96        17.79         3.98        28.54        10.03 
TCGA-26-1439 TCGA-26-1442 TCGA-26-1443 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 
       13.87        31.33         7.13         9.40        14.86         5.49 
TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-26-A7UX 
        8.88        18.97         1.58         7.92         2.33        19.33 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 
        5.06        16.60         9.86        24.23        40.54        21.30 
TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 
       30.05        14.04        11.51        24.76        10.39        10.39 
TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 
       16.08         7.59         2.86        14.40        15.78         0.20 
TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 
        2.53         9.21         8.35         7.63         8.48         1.22 
TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 
        1.55         2.83         0.13         0.66         6.74         4.77 
TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5211 
        7.30         5.26        14.93        11.28        17.88        11.77 
TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5219 TCGA-28-5220 
       31.27        23.44        11.01        13.64        22.68        12.76 
TCGA-28-6450 TCGA-32-1970 TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 
        5.42        15.39         0.49         0.10        15.85        19.50 
TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 
        1.18         4.67        12.69        14.86        16.93        12.23 
TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2616 TCGA-32-2634 TCGA-32-2638 
       20.78        15.02        15.95         7.36        22.78        25.18 
TCGA-32-4208 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 
       21.14        12.59        19.86        10.85        19.23         0.85 
TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 
       13.35         8.94         9.53         0.99         4.44        11.84 
TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-4W-AA9S TCGA-4W-AA9T TCGA-74-6573 
        0.20        15.12        12.46         4.14        14.76         3.45 
TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 
       20.91         4.34        14.33         8.22         7.50         4.80 
TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 
        4.54         3.09         3.65         9.17         2.53        10.78 
TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 
       16.70         3.29         2.70        11.38        17.06         8.35 
TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 
       20.98         4.83         5.03         0.23         9.27         7.73 
TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 TCGA-OX-A56R TCGA-RR-A6KA 
        7.79         1.61        17.72        26.30         5.92         6.28 
TCGA-RR-A6KC TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 
       20.55         7.69        43.89        18.15        10.62        64.64 
TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 
       40.18         0.10        21.01         9.96         6.38        17.69 
TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6666 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 
       23.84        17.95         8.48         8.02         7.40         6.61 
TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5278 
      122.73        81.96        75.25        47.93        72.92        50.17 
TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC 
       44.52        36.56        46.42        18.84        30.21        46.72 
TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L 
       39.78        37.45        33.57        72.95        31.63        24.20 
TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U 
       25.48        30.12         5.98        31.40        27.45        27.81 
TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75M TCGA-DB-A75O 
       29.23        14.40        18.51        12.10        17.88        30.74 
TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 
       16.18        19.96        31.82        14.40         8.02        30.21 
TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT 
       27.81        17.19        17.19        54.25        13.12        13.38 
TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 
        3.45        18.61        18.02        14.56        17.46         6.74 
TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5872 TCGA-DU-5874 
       13.38         8.45         6.81       182.33        17.49        15.16 
TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6397 TCGA-DU-6399 
      211.17        52.11        22.42        49.02        46.06        65.75 
TCGA-DU-6400 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 
        1.22         7.04        11.64       133.74        19.89        16.83 
TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-7006 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7011 
      114.08         7.96        11.47       156.23       138.28       105.21 
TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 
        6.54         8.84        90.77        30.67        26.30        10.36 
TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 
        7.96        94.32        18.94        44.02        62.01        25.91 
TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 
       60.30        23.31        41.98         2.76         5.10        23.74 
TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8168 
       14.60        20.68        21.40        19.13        16.96        14.17 
TCGA-DU-A5TR TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 
       12.59        12.20         8.65         2.70        77.98         7.23 
TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 
        5.98        11.41        26.76         7.13        21.30        17.98 
TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG 
      124.50        77.88        42.31        23.51         7.50        44.42 
TCGA-DU-A7TJ TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5311 TCGA-E1-5319 
        0.56        67.46        41.13        79.99       134.27        95.57 
TCGA-E1-A7YO TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 
       75.02        32.45        36.82        32.35        14.33         0.23 
TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 
        0.20        47.77        25.48        34.36        36.82        18.77 
TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7638 
       14.93        24.99        23.97        18.44        15.35        22.55 
TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8186 TCGA-FG-8187 
       20.61        20.09        12.95        13.68        16.01        20.09 
TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW 
       14.96        22.52        32.61        38.27        10.72        18.38 
TCGA-FG-A4MX TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 
       18.71        14.76        17.82        16.41        15.02        16.44 
TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A87N 
       22.26        28.54        10.78        36.66        48.69        13.58 
TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 
        5.72        27.52         0.10         6.67        11.54        40.11 
TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7478 
        0.13         0.03        16.54         3.75        17.42         6.38 
TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 
       40.34        75.19        95.93       106.95       172.77         4.01 
TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 
        5.03        29.85        23.18       122.47         4.57        17.29 
TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 
        3.16        22.06        56.09        57.60         0.23        14.27 
TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 
        0.16        16.24         0.76        44.68         6.05        42.74 
TCGA-HT-7687 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 
        0.10         0.10         0.10         2.96        17.52         6.90 
TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7856 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 
       14.53        39.48        39.09        50.63         0.49        23.61 
TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 
       37.15         0.33         0.13         3.68         5.33        35.47 
TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8015 
        3.72        11.28         1.64        16.24         9.40         0.10 
TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8105 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 
       37.87        33.01         6.25         0.46         2.50         5.56 
TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8564 TCGA-HT-A4DS 
       13.78         0.23        29.59        34.19        15.72         0.23 
TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB 
       26.04         0.13        20.22         0.07        27.35         0.10 
TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A617 TCGA-HT-A619 TCGA-HT-A61B 
        5.33         2.70        16.93        16.14        21.40        17.52 
TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74K TCGA-HT-A74L TCGA-HW-7486 TCGA-HW-7487 
       17.65         2.43        15.35        11.05        29.92        19.89 
TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 
        8.32        19.23        40.18         4.31        21.70        21.60 
TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 
       17.82        20.35        12.76        20.81        20.71        19.00 
TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX 
       42.77        14.40        14.40         0.23         6.71         1.64 
TCGA-P5-A5EY TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 
        2.37         4.11         5.88         7.63         0.76         1.28 
TCGA-P5-A72U TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-QH-A65R 
        0.16        13.25        11.64         0.20         9.01        15.16 
TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CW 
       12.62        15.85        14.04        19.33        14.83        13.61 
TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 
       12.23         2.20         9.17        10.29        14.53        16.34 
TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 
       16.73         1.91        16.50         5.03        11.08        12.99 
TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y 
       88.83        94.03        32.65        59.38        30.87         5.46 
TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TU 
        9.90        28.08         2.07        19.59        30.67        87.12 
TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 
       18.77        37.84        34.49        31.33        28.70        22.95 
TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 
       17.62        23.64        32.61        16.08        98.24        95.93 
TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH 
        5.85       106.39        69.50        72.59        80.12        32.45 
TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP 
       84.99        31.10        19.86        15.91        18.61        15.16 
TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7J0 
       14.07        36.13         7.92        22.32        23.51        20.02 
TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QY TCGA-S9-A7QZ 
        8.19         2.04        17.03        15.06        28.37        13.02 
TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 
      169.84        10.39        99.06        30.05        98.63        31.59 
TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF 
       11.97        49.45        48.33        49.32        34.78        48.39 
TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I 
       24.92        16.18        59.05        40.64        30.44        28.08 
TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84R TCGA-TM-A84S 
       24.16        40.83        24.79        33.24        18.61        14.93 
TCGA-TM-A84T TCGA-TQ-A7RH TCGA-TQ-A7RW TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB 
       23.80        15.98        26.99        30.08        13.51         0.10 
TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CH TCGA-VV-A829 TCGA-VW-A7QS TCGA-VW-A8FI 
        7.89        35.93        23.47        37.05        23.21         8.05 
TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A85A TCGA-WY-A85C TCGA-WY-A85D 
       51.06        13.32        43.40        46.88        37.71 

  AMP PEAK 32(XP11.21) MUTATED AMP PEAK 32(XP11.21) WILD-TYPE 
                          0.10                           0.03 
  AMP PEAK 32(XP11.21) MUTATED AMP PEAK 32(XP11.21) WILD-TYPE 
                        130.78                         211.17 
  AMP PEAK 32(XP11.21) MUTATED AMP PEAK 32(XP11.21) WILD-TYPE 
                          15.4                           14.6 
[1] "0.1 - 130.8 (15.4)" "0.0 - 211.2 (14.6)"
[1] "hr=" "1.6"
D32V2, continuous
D32V3, binary
                                cls
clus                               0   1
  AMP PEAK 32(XP11.21) MUTATED    34  64
  AMP PEAK 32(XP11.21) WILD-TYPE 536 408
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 32(XP11.21) MUTATED     34   64
  AMP PEAK 32(XP11.21) WILD-TYPE  536  408
                        clus
vv                       AMP PEAK 32(XP11.21) MUTATED
  BRAIN                                            34
  CENTRAL NERVOUS SYSTEM                           64
                        clus
vv                       AMP PEAK 32(XP11.21) WILD-TYPE
  BRAIN                                             536
  CENTRAL NERVOUS SYSTEM                            408
[1] 2 2
[1] FALSE
D32V4, binary
                                cls
clus                               0   1
  AMP PEAK 32(XP11.21) MUTATED    52  46
  AMP PEAK 32(XP11.21) WILD-TYPE 378 566
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 32(XP11.21) MUTATED     52   46
  AMP PEAK 32(XP11.21) WILD-TYPE  378  566
        clus
vv       AMP PEAK 32(XP11.21) MUTATED AMP PEAK 32(XP11.21) WILD-TYPE
  FEMALE                           52                            378
  MALE                             46                            566
[1] 2 2
[1] FALSE
D32V5, continuous
                                vv
clus                             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  AMP PEAK 32(XP11.21) MUTATED            40                             3
  AMP PEAK 32(XP11.21) WILD-TYPE         136                            24
                                vv
clus                             OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  AMP PEAK 32(XP11.21) MUTATED                 15                 9
  AMP PEAK 32(XP11.21) WILD-TYPE              103               169
                                vv
clus                             TREATED PRIMARY GBM
  AMP PEAK 32(XP11.21) MUTATED                     2
  AMP PEAK 32(XP11.21) WILD-TYPE                  16
                                vv
clus                             UNTREATED PRIMARY (DE NOVO) GBM
  AMP PEAK 32(XP11.21) MUTATED                                29
  AMP PEAK 32(XP11.21) WILD-TYPE                             496
D32V6, multiclass
                                 clus
vv                                AMP PEAK 32(XP11.21) MUTATED
  ASTROCYTOMA                                               40
  GLIOBLASTOMA MULTIFORME (GBM)                              3
  OLIGOASTROCYTOMA                                          15
  OLIGODENDROGLIOMA                                          9
  TREATED PRIMARY GBM                                        2
  UNTREATED PRIMARY (DE NOVO) GBM                           29
                                 clus
vv                                AMP PEAK 32(XP11.21) WILD-TYPE
  ASTROCYTOMA                                                136
  GLIOBLASTOMA MULTIFORME (GBM)                               24
  OLIGOASTROCYTOMA                                           103
  OLIGODENDROGLIOMA                                          169
  TREATED PRIMARY GBM                                         16
  UNTREATED PRIMARY (DE NOVO) GBM                            496
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D32V7, binary
                                cls
clus                               0   1
  AMP PEAK 32(XP11.21) MUTATED    37  61
  AMP PEAK 32(XP11.21) WILD-TYPE 437 507
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 32(XP11.21) MUTATED     37   61
  AMP PEAK 32(XP11.21) WILD-TYPE  437  507
     clus
vv    AMP PEAK 32(XP11.21) MUTATED AMP PEAK 32(XP11.21) WILD-TYPE
  NO                            37                            437
  YES                           61                            507
[1] 2 2
[1] FALSE
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK 32(XP11.21) MUTATED                                  0     2
  AMP PEAK 32(XP11.21) WILD-TYPE                                1    19
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 32(XP11.21) MUTATED                           4    89
  AMP PEAK 32(XP11.21) WILD-TYPE                        60   833
D32V8, multiclass
                                  clus
vv                                 AMP PEAK 32(XP11.21) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            0
  ASIAN                                                       2
  BLACK OR AFRICAN AMERICAN                                   4
  WHITE                                                      89
                                  clus
vv                                 AMP PEAK 32(XP11.21) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              1
  ASIAN                                                        19
  BLACK OR AFRICAN AMERICAN                                    60
  WHITE                                                       833
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D32V9, binary
                                cls
clus                               0   1
  AMP PEAK 32(XP11.21) MUTATED     6  82
  AMP PEAK 32(XP11.21) WILD-TYPE  24 809
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 32(XP11.21) MUTATED      6   82
  AMP PEAK 32(XP11.21) WILD-TYPE   24  809
                        clus
vv                       AMP PEAK 32(XP11.21) MUTATED
  HISPANIC OR LATINO                                6
  NOT HISPANIC OR LATINO                           82
                        clus
vv                       AMP PEAK 32(XP11.21) WILD-TYPE
  HISPANIC OR LATINO                                 24
  NOT HISPANIC OR LATINO                            809
[1] 2 2
[1] FALSE

Clustering(33) Variable = DEL PEAK  1(1P36.32) MUTATION ANALYSIS
D33V1, survival
                                sevent
clus2                              0   1
  DEL PEAK  1(1P36.32) MUTATED   177 121
  DEL PEAK  1(1P36.32) WILD-TYPE 303 438
  DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE 
                           298                            741 
  DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE 
                           121                            438 
$`DEL PEAK  1(1P36.32) MUTATED`
TCGA-02-0015 TCGA-02-0023 TCGA-02-0024 TCGA-02-0025 TCGA-02-0026 TCGA-02-0028 
       20.61        20.12        53.10        42.74        24.59        90.58 
TCGA-02-0051 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 TCGA-02-0104 TCGA-02-0114 
       15.09        19.73        26.43        28.70        65.00        99.98 
TCGA-02-0115 TCGA-02-0281 TCGA-02-0290 TCGA-02-0446 TCGA-02-2483 TCGA-06-0124 
       15.65         3.98        15.95         9.27        15.32        20.38 
TCGA-06-0126 TCGA-06-0137 TCGA-06-0158 TCGA-06-0162 TCGA-06-0164 TCGA-06-0166 
        6.94        26.70        10.82         3.42        56.91         5.85 
TCGA-06-0168 TCGA-06-0171 TCGA-06-0175 TCGA-06-0184 TCGA-06-0195 TCGA-06-0208 
       19.66        13.12         4.04        69.90         7.40         8.42 
TCGA-06-0743 TCGA-06-0745 TCGA-06-0747 TCGA-06-0878 TCGA-06-0879 TCGA-06-1084 
       26.40         7.86         2.70         7.17        40.41        23.93 
TCGA-06-1087 TCGA-06-1801 TCGA-06-1802 TCGA-06-2562 TCGA-06-5411 TCGA-06-5859 
        4.04        11.84        15.32        12.56         8.35         4.57 
TCGA-06-6693 TCGA-08-0244 TCGA-08-0344 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 
      120.56        22.68       115.86        15.35        13.97         0.72 
TCGA-08-0510 TCGA-08-0514 TCGA-08-0517 TCGA-08-0520 TCGA-12-0688 TCGA-12-0820 
        4.27        11.08        58.68        10.75        26.66        18.48 
TCGA-12-0821 TCGA-12-1091 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-3649 
       10.62        33.21        15.98        12.23        15.85        15.22 
TCGA-12-3651 TCGA-14-0736 TCGA-14-0786 TCGA-14-0787 TCGA-14-0862 TCGA-14-0865 
       12.69        15.12        23.05         2.24         2.89        16.50 
TCGA-14-1396 TCGA-14-1451 TCGA-14-1453 TCGA-14-1458 TCGA-14-1821 TCGA-15-1449 
        1.12        23.11         1.15         6.67        17.79        13.28 
TCGA-16-0861 TCGA-16-1056 TCGA-19-0962 TCGA-19-0963 TCGA-19-1386 TCGA-19-1387 
        4.31        14.01         0.66        14.27         9.07         5.95 
TCGA-19-2619 TCGA-19-2629 TCGA-19-5947 TCGA-19-5950 TCGA-19-5958 TCGA-19-5959 
        9.67        24.23         6.64        17.19        14.07        16.80 
TCGA-27-1833 TCGA-27-2521 TCGA-27-2524 TCGA-28-1750 TCGA-28-1752 TCGA-28-1756 
       24.23        10.39         7.59         8.35         8.48         2.83 
TCGA-28-2502 TCGA-28-5211 TCGA-28-5213 TCGA-28-6450 TCGA-32-1977 TCGA-32-4208 
        0.66        11.77        31.27         5.42         0.10        21.14 
TCGA-41-2572 TCGA-41-2575 TCGA-41-4097 TCGA-74-6575 TCGA-76-4931 TCGA-76-6191 
       13.35         9.53         0.20        20.91         9.17        16.70 
TCGA-76-6285 TCGA-76-6286 TCGA-76-6657 TCGA-76-6661 TCGA-87-5896 TCGA-OX-A56R 
        8.35        20.98         5.03         0.23        26.30         5.92 
TCGA-CS-5390 TCGA-CS-5394 TCGA-CS-5396 TCGA-CS-6668 TCGA-CS-6670 TCGA-DB-5274 
       64.64         0.10         9.96         8.02         6.61        75.25 
TCGA-DB-5275 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-A4XA TCGA-DB-A4XG TCGA-DB-A4XH 
       47.93        50.17        44.52        18.84        72.95        31.63 
TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64U 
       24.20        25.48        30.12         5.98        31.40        27.81 
TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A75K TCGA-DH-5141 TCGA-DH-5144 TCGA-DH-A669 
       29.23        14.40        12.10        31.82         8.02        30.21 
TCGA-DH-A66F TCGA-DH-A7UR TCGA-DH-A7US TCGA-DU-5849 TCGA-DU-5852 TCGA-DU-5870 
       17.19        54.25        13.12        14.56         6.74       182.33 
TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6396 TCGA-DU-6397 
       17.49        15.16        52.11        22.42        75.16        46.06 
TCGA-DU-6400 TCGA-DU-6402 TCGA-DU-6405 TCGA-DU-6410 TCGA-DU-7006 TCGA-DU-7009 
        1.22         7.04        19.89         7.96        11.47       138.28 
TCGA-DU-7014 TCGA-DU-7018 TCGA-DU-7290 TCGA-DU-7294 TCGA-DU-7300 TCGA-DU-7302 
      117.40        30.67        10.36        94.32        62.01        60.30 
TCGA-DU-8158 TCGA-DU-8164 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A6S2 TCGA-DU-A6S3 
        5.10        21.40        15.48        14.17         8.65         2.70 
TCGA-DU-A6S6 TCGA-DU-A6S8 TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7TG TCGA-E1-5311 
       77.98         5.98        21.30        17.98        44.42       134.27 
TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-A7YO TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-FG-5962 
       78.21        95.57        75.02        14.33         0.23        47.77 
TCGA-FG-5964 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-8185 
       34.36        18.44        15.35        22.55        20.61        14.24 
TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8189 TCGA-FG-A60K TCGA-FG-A6IZ TCGA-FG-A6J1 
       16.01        20.09        22.52        17.82        15.02        16.44 
TCGA-FG-A710 TCGA-FG-A713 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7471 TCGA-HT-7477 
       36.66        20.45         0.10         6.67         0.13        24.26 
TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7605 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7616 
       75.19        95.93         4.57         3.16        22.06         0.23 
TCGA-HT-7620 TCGA-HT-7677 TCGA-HT-7681 TCGA-HT-7687 TCGA-HT-7692 TCGA-HT-7694 
       14.27        16.24        44.68         0.10         2.96         6.90 
TCGA-HT-7695 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 
       14.53        39.09         0.23        37.15         0.33         0.13 
TCGA-HT-7881 TCGA-HT-8010 TCGA-HT-8012 TCGA-HT-8105 TCGA-HT-8109 TCGA-HT-8113 
       35.47         1.64         9.40         6.25         5.56        29.59 
TCGA-HT-A4DV TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A615 TCGA-HT-A617 TCGA-HT-A619 
       26.04         0.07        27.35        16.93        16.14        21.40 
TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74K TCGA-HT-A74L TCGA-HW-7486 TCGA-HW-7487 
       17.65         2.43        15.35        11.05        29.92        19.89 
TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-IK-8125 TCGA-KT-A74X 
       40.18         4.31        17.82        20.35        42.77        14.40 
TCGA-P5-A5EX TCGA-P5-A5F0 TCGA-P5-A5F4 TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 
        1.64         4.11         0.76        11.64         0.20         9.01 
TCGA-QH-A65R TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CU TCGA-QH-A6CV 
       15.16        12.62        15.85        14.04        14.83        14.53 
TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6XC 
        2.20         9.17        14.53        16.34        16.73         5.03 
TCGA-QH-A86X TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X 
       11.08        88.83        94.03        32.65        59.38        30.87 
TCGA-RY-A83Y TCGA-RY-A840 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TW TCGA-S9-A6TX 
        5.46        28.08        30.67        62.17        37.84        34.49 
TCGA-S9-A6TY TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE 
       31.33        23.64        32.61       106.39        69.50        72.59 
TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WP 
       32.45        84.99        31.10        19.86        15.91        15.16 
TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IY TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 
       14.07        36.13        23.51         8.19         2.04        17.03 
TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-TM-A7C5 TCGA-TM-A84G TCGA-TM-A84M 
       28.37        13.02       169.84        49.32        40.64        24.79 
TCGA-TM-A84O TCGA-TM-A84R TCGA-TM-A84S TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD 
       33.24        18.61        14.93        13.51         0.10         7.89 
TCGA-VM-A8CE TCGA-VV-A829 TCGA-VW-A7QS TCGA-W9-A837 
       35.93        37.05        23.21        51.06 

$`DEL PEAK  1(1P36.32) WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
       11.77         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0014 TCGA-02-0016 TCGA-02-0021 TCGA-02-0027 TCGA-02-0033 
       20.71        82.59        87.06        77.65        12.16         2.83 
TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 
       14.14         3.62        10.72        10.52        18.31         6.87 
TCGA-02-0047 TCGA-02-0048 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 
       14.73         3.22        12.59         6.54         2.50        19.86 
TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 
        8.35         9.57         6.02        25.05         5.49        10.19 
TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 
       20.84        27.25        89.72        22.72        12.62        51.32 
TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0106 
        8.81        57.76        16.96         3.48        27.02        11.67 
TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 
       17.65        23.18        92.65        48.95        16.54        16.93 
TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0285 TCGA-02-0289 TCGA-02-0317 
       17.72        10.75        14.47        13.87        14.20        12.23 
TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 
        9.90         7.73        10.62         7.33        15.91        25.71 
TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 
        4.37        25.12        10.59        12.39        14.50        10.55 
TCGA-02-0432 TCGA-02-0440 TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 
       47.11        11.34        16.21         3.35        16.80        12.92 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0125 TCGA-06-0127 
       15.45        20.32         2.70         6.15        47.61         3.98 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0138 
       22.72        33.67        12.95        25.35        14.30        24.23 
TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 
       11.90         0.20        10.29         2.20        11.74         2.33 
TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 
       20.09        17.79        10.09         8.61        19.46        46.59 
TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0159 TCGA-06-0160 
       12.33        13.94        10.45         3.19         9.44        11.80 
TCGA-06-0165 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0176 TCGA-06-0177 
       10.65         3.29         4.47         3.22        91.00         4.18 
TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 
       88.14        20.25         3.65        73.84        27.22        44.58 
TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0197 TCGA-06-0201 
       15.42        10.42        38.96         4.67         5.56         0.39 
TCGA-06-0206 TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 
        7.66         7.63         7.40        11.84         0.53        15.02 
TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 
       24.16         0.72        19.82        13.64        13.32        20.42 
TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 
       48.69        10.82         9.01         0.26        72.36         4.70 
TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
        9.57         3.16        35.11        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0744 TCGA-06-0749 
        9.80         2.10        23.57        14.20        46.88         2.70 
TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0881 TCGA-06-0882 
        0.92        43.46        46.19         5.65        16.57        20.78 
TCGA-06-0939 TCGA-06-1086 TCGA-06-1800 TCGA-06-1804 TCGA-06-1805 TCGA-06-1806 
       26.76         6.84        26.79        13.61        33.90        15.32 
TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2563 TCGA-06-2564 
        1.08        12.49         4.93        17.65        30.64         5.95 
TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 
       16.64         5.98         4.37         0.43        31.50        11.74 
TCGA-06-5410 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 
        3.55         4.54         8.81         8.98         8.55         6.71 
TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 
        2.73         3.75         6.15         5.23         7.79         5.39 
TCGA-06-6391 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 
        1.48         7.36         8.32        12.85         4.77         1.55 
TCGA-06-6700 TCGA-06-6701 TCGA-06-A5U0 TCGA-06-A5U1 TCGA-06-A6S0 TCGA-06-A6S1 
        4.77         4.96         4.70         1.87         3.12         2.56 
TCGA-06-A7TK TCGA-06-A7TL TCGA-08-0245 TCGA-08-0246 TCGA-08-0345 TCGA-08-0346 
        5.39         5.42        37.84         4.18         1.74         8.42 
TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 
       25.71        12.16         9.80        29.23        65.33         1.28 
TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 
        8.42        17.95        24.56        31.10        37.58        22.29 
TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 TCGA-08-0509 TCGA-08-0512 
        3.39        12.23        14.93        18.02        12.56        42.15 
TCGA-08-0516 TCGA-08-0518 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 
       19.59        19.33         4.80         7.27        15.98        18.41 
TCGA-08-0531 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 
        7.56        15.35        14.73        12.99        34.92        10.45 
TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0691 
        7.59        94.78         0.10        38.17        25.97        12.13 
TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 
        3.65        20.38        28.41        15.06        53.85        43.23 
TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 
        7.63         9.73        14.93        14.86        91.76        24.79 
TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 
       23.51        27.78        38.76         8.94        20.58       127.59 
TCGA-12-1089 TCGA-12-1090 TCGA-12-1092 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 
        5.82         7.59        21.73         9.11        14.53         3.98 
TCGA-12-1099 TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 
        4.14        15.65        25.68        14.73         6.77        59.77 
TCGA-12-3646 TCGA-12-3648 TCGA-12-3650 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 
       44.02        26.93        10.95        34.92        14.53        14.93 
TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 TCGA-14-0789 
        3.22         2.04        11.97         0.95         6.21        11.24 
TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 TCGA-14-0866 TCGA-14-0867 
       13.78         3.25         1.35         5.39        26.33         2.04 
TCGA-14-0871 TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1401 
       28.93        15.95        19.30         0.79         1.38         3.75 
TCGA-14-1402 TCGA-14-1450 TCGA-14-1452 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 
       32.05        58.78         7.10        30.18         0.92        40.96 
TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 
       12.43         0.99         1.97        17.85         7.63         5.88 
TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-3477 TCGA-14-4157 TCGA-15-0742 
        7.17        17.49         7.96         3.78         3.42        13.78 
TCGA-15-1444 TCGA-15-1446 TCGA-15-1447 TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 
       50.53        19.10        53.19         3.91        17.59        26.07 
TCGA-16-0850 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1060 TCGA-16-1062 
       16.37        29.03         4.57        10.29         9.14        21.24 
TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 TCGA-19-0964 
       13.97         6.41        11.77        21.90         8.61         3.39 
TCGA-19-1385 TCGA-19-1388 TCGA-19-1389 TCGA-19-1390 TCGA-19-1392 TCGA-19-1786 
       10.75        12.95         4.64        25.38         3.65         7.17 
TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 
       12.66         3.25         0.13         4.87         1.08         7.53 
TCGA-19-2624 TCGA-19-2625 TCGA-19-2631 TCGA-19-4065 TCGA-19-5951 TCGA-19-5952 
        0.16         4.08         7.00         7.04         8.02        18.90 
TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5960 TCGA-19-A60I 
        4.73        12.10         1.78        22.49        14.96        17.79 
TCGA-19-A6J4 TCGA-19-A6J5 TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 TCGA-26-1442 
        3.98        28.54        10.03        13.87         9.73        31.33 
TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 
        7.13         9.37         9.40        14.86         5.49         8.88 
TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-26-A7UX TCGA-27-1830 
       18.97         1.58         7.92         2.33        19.33         5.06 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 
       16.60         9.86        40.54        21.30        30.05        14.04 
TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2523 TCGA-27-2526 TCGA-27-2527 
       11.51        24.76        10.39        16.08         2.86        14.40 
TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1751 TCGA-28-1753 
       15.78         0.20         2.53         9.21         7.63         1.22 
TCGA-28-1755 TCGA-28-1757 TCGA-28-2506 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 
        1.55         0.13         6.74         4.77         7.30         5.26 
TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5214 TCGA-28-5215 
       14.93        11.28        17.88        14.53        23.44        11.01 
TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-32-1970 TCGA-32-1973 
       13.64         5.16        22.68        12.76        15.39        21.07 
TCGA-32-1976 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 
        0.49        15.85        19.50         1.18         4.67        12.69 
TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 
       14.86        16.93        12.23        20.78        15.02        15.95 
TCGA-32-2616 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4210 TCGA-32-4211 
        7.36         8.84        22.78        25.18         3.72        12.59 
TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2573 TCGA-41-3392 
       19.86        10.85        19.23         0.85         8.94         0.99 
TCGA-41-3393 TCGA-41-3915 TCGA-41-5651 TCGA-41-6646 TCGA-4W-AA9S TCGA-4W-AA9T 
        4.44        11.84        15.12        12.46         4.14        14.76 
TCGA-74-6573 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 
        3.45         4.34        14.33         8.22         7.50         4.80 
TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4934 TCGA-76-4935 TCGA-76-6192 
        4.54         3.09         3.65         2.53        10.78         3.29 
TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6656 TCGA-76-6662 TCGA-76-6663 
        2.70        11.38        17.06         4.83         9.27         7.73 
TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-RR-A6KA TCGA-RR-A6KC TCGA-CS-4938 
        7.79         1.61        17.72         6.28        20.55         4.70 
TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5393 TCGA-CS-5395 
        7.69        43.89        18.15        10.62        40.18        21.01 
TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 
        6.38        17.69        23.84        17.95        12.43         8.48 
TCGA-CS-6667 TCGA-CS-6669 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5276 TCGA-DB-5277 
        7.56         7.40       122.73        81.96        72.92        50.86 
TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD 
       36.56        78.28        46.42        30.21        46.72        39.78 
TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A64S TCGA-DB-A64X TCGA-DB-A75L TCGA-DB-A75M 
       37.45        33.57        27.45        18.51        11.24        17.88 
TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-A66B 
       30.74        16.18        19.96        30.31        14.40        42.05 
TCGA-DH-A66D TCGA-DH-A66G TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 
       27.81        17.19        13.38         3.45        18.61        18.02 
TCGA-DU-5851 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5871 TCGA-DU-6392 
       17.46        13.38         8.45         6.81        18.94       211.17 
TCGA-DU-6395 TCGA-DU-6399 TCGA-DU-6401 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6406 
       49.02        65.75        87.45        11.64       133.74        16.83 
TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6542 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7010 
       94.52       114.08         7.73        62.96       156.23        14.99 
TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7019 TCGA-DU-7292 
      105.21         6.54         8.84        90.77        26.30         7.96 
TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7301 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 
       18.94        44.02        25.91        23.31        41.98         2.76 
TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-A5TP 
       23.74        14.60        20.68        19.13        16.96        14.24 
TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY 
       12.59        15.12         4.96         3.65         5.65        12.20 
TCGA-DU-A6S7 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A7T8 TCGA-DU-A7TA 
        7.23        11.41        26.76         7.13       124.50        77.88 
TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 
       42.31        23.51         7.50         0.56        50.14        67.46 
TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5322 TCGA-E1-A7YV TCGA-E1-A7YW 
       41.13        79.99        57.93       130.78        32.45        36.82 
TCGA-E1-A7Z6 TCGA-F6-A8O4 TCGA-FG-5963 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 
       32.35         0.20        25.48        36.82        18.77        14.93 
TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-7636 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 
       24.99        23.97        17.88        20.09        12.95        13.68 
TCGA-FG-8188 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX 
       14.96        32.61        38.27        10.72        18.38        18.71 
TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60L TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z 
       23.70        14.76        16.41        22.26        28.54        10.78 
TCGA-FG-A711 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7469 TCGA-HT-7470 
       48.69        13.58         5.72        27.52        11.54        40.11 
TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7478 
        0.03        16.54         3.75        17.42         6.54         6.38 
TCGA-HT-7479 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 
       40.34       106.95       172.77         4.01         5.03        29.85 
TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7606 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 
       23.18       122.47        17.29        45.99        56.09        57.60 
TCGA-HT-7676 TCGA-HT-7680 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7688 TCGA-HT-7689 
        0.16         0.76         6.05        42.74        31.69        14.96 
TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7693 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7858 
        0.10         0.10        17.52        39.48        19.23        50.63 
TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7882 TCGA-HT-7884 
        0.49        23.61         3.68         5.33         3.72        11.28 
TCGA-HT-7902 TCGA-HT-8011 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 
       31.43        16.24        63.55         0.10        37.87        33.01 
TCGA-HT-8104 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8110 TCGA-HT-8111 
       12.23         0.10         0.46         2.50        13.78         0.23 
TCGA-HT-8114 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A5R5 TCGA-HT-A5R7 
       34.19        28.27        15.72         0.23         0.13        20.22 
TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A616 TCGA-HT-A618 TCGA-HT-A61B 
        0.10         5.33         2.70         1.81        16.83        17.52 
TCGA-HT-A74J TCGA-HT-A74O TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7493 TCGA-HW-8319 
       10.52         0.10         8.32        19.23        35.90        21.70 
TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 
       21.60        19.59        12.76        20.81        20.71        19.00 
TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F1 
       14.40         0.23         6.71         2.37         2.30         5.88 
TCGA-P5-A5F2 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A733 
        7.63         1.28         0.16        10.42        13.25        13.61 
TCGA-QH-A65S TCGA-QH-A6CS TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6X3 TCGA-QH-A6X9 
        2.53        19.33        13.61        12.23        10.29         1.91 
TCGA-QH-A6XA TCGA-QH-A870 TCGA-RY-A83Z TCGA-RY-A843 TCGA-RY-A845 TCGA-S9-A6TU 
       16.50        12.99         9.90         2.07        19.59        87.12 
TCGA-S9-A6TV TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U6 TCGA-S9-A6U8 
       18.77        28.70        22.95        17.62        16.08        98.24 
TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6WG TCGA-S9-A6WO TCGA-S9-A7IS TCGA-S9-A7IX 
       95.93         5.85        80.12        18.61         7.92        22.32 
TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7R2 TCGA-S9-A7R3 
        7.13        20.02        15.06        13.12        10.39        99.06 
TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 
       30.05        98.63        31.59        18.71        11.97        49.45 
TCGA-TM-A7C4 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F 
       48.33        34.78        48.39        24.92        16.18        59.05 
TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84Q TCGA-TM-A84T 
       30.44        28.08        24.16        40.83        25.38        23.80 
TCGA-TQ-A7RH TCGA-TQ-A7RW TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CH TCGA-VV-A86M 
       15.98        26.99        43.04        30.08        23.47        16.01 
TCGA-VW-A8FI TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B 
        8.05        13.32        43.96        39.88        43.40        45.80 
TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       46.88        37.71        20.81 

  DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE 
                          0.07                           0.03 
  DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE 
                        182.33                         211.17 
  DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE 
                        16.075                         13.940 
[1] "0.1 - 182.3 (16.1)" "0.0 - 211.2 (13.9)"
[1] "hr=" "1.8"
D33V2, continuous
D33V3, binary
                                cls
clus                               0   1
  DEL PEAK  1(1P36.32) MUTATED   108 191
  DEL PEAK  1(1P36.32) WILD-TYPE 462 281
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  1(1P36.32) MUTATED    108  191
  DEL PEAK  1(1P36.32) WILD-TYPE  462  281
                        clus
vv                       DEL PEAK  1(1P36.32) MUTATED
  BRAIN                                           108
  CENTRAL NERVOUS SYSTEM                          191
                        clus
vv                       DEL PEAK  1(1P36.32) WILD-TYPE
  BRAIN                                             462
  CENTRAL NERVOUS SYSTEM                            281
[1] 2 2
[1] FALSE
D33V4, binary
                                cls
clus                               0   1
  DEL PEAK  1(1P36.32) MUTATED   120 179
  DEL PEAK  1(1P36.32) WILD-TYPE 310 433
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  1(1P36.32) MUTATED    120  179
  DEL PEAK  1(1P36.32) WILD-TYPE  310  433
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  FEMALE                          120                            310
  MALE                            179                            433
[1] 2 2
[1] FALSE
D33V5, continuous
                                vv
clus                             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  DEL PEAK  1(1P36.32) MUTATED            19                             1
  DEL PEAK  1(1P36.32) WILD-TYPE         157                            26
                                vv
clus                             OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  DEL PEAK  1(1P36.32) MUTATED                 41               131
  DEL PEAK  1(1P36.32) WILD-TYPE               77                47
                                vv
clus                             TREATED PRIMARY GBM
  DEL PEAK  1(1P36.32) MUTATED                     4
  DEL PEAK  1(1P36.32) WILD-TYPE                  14
                                vv
clus                             UNTREATED PRIMARY (DE NOVO) GBM
  DEL PEAK  1(1P36.32) MUTATED                               103
  DEL PEAK  1(1P36.32) WILD-TYPE                             422
D33V6, multiclass
                                 clus
vv                                DEL PEAK  1(1P36.32) MUTATED
  ASTROCYTOMA                                               19
  GLIOBLASTOMA MULTIFORME (GBM)                              1
  OLIGOASTROCYTOMA                                          41
  OLIGODENDROGLIOMA                                        131
  TREATED PRIMARY GBM                                        4
  UNTREATED PRIMARY (DE NOVO) GBM                          103
                                 clus
vv                                DEL PEAK  1(1P36.32) WILD-TYPE
  ASTROCYTOMA                                                157
  GLIOBLASTOMA MULTIFORME (GBM)                               26
  OLIGOASTROCYTOMA                                            77
  OLIGODENDROGLIOMA                                           47
  TREATED PRIMARY GBM                                         14
  UNTREATED PRIMARY (DE NOVO) GBM                            422
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D33V7, binary
                                cls
clus                               0   1
  DEL PEAK  1(1P36.32) MUTATED   102 197
  DEL PEAK  1(1P36.32) WILD-TYPE 372 371
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  1(1P36.32) MUTATED    102  197
  DEL PEAK  1(1P36.32) WILD-TYPE  372  371
     clus
vv    DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  NO                           102                            372
  YES                          197                            371
[1] 2 2
[1] FALSE
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK  1(1P36.32) MUTATED                                  1    10
  DEL PEAK  1(1P36.32) WILD-TYPE                                0    11
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK  1(1P36.32) MUTATED                          12   268
  DEL PEAK  1(1P36.32) WILD-TYPE                        52   654
D33V8, multiclass
                                  clus
vv                                 DEL PEAK  1(1P36.32) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            1
  ASIAN                                                      10
  BLACK OR AFRICAN AMERICAN                                  12
  WHITE                                                     268
                                  clus
vv                                 DEL PEAK  1(1P36.32) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              0
  ASIAN                                                        11
  BLACK OR AFRICAN AMERICAN                                    52
  WHITE                                                       654
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D33V9, binary
                                cls
clus                               0   1
  DEL PEAK  1(1P36.32) MUTATED     7 259
  DEL PEAK  1(1P36.32) WILD-TYPE  23 632
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  1(1P36.32) MUTATED      7  259
  DEL PEAK  1(1P36.32) WILD-TYPE   23  632
                        clus
vv                       DEL PEAK  1(1P36.32) MUTATED
  HISPANIC OR LATINO                                7
  NOT HISPANIC OR LATINO                          259
                        clus
vv                       DEL PEAK  1(1P36.32) WILD-TYPE
  HISPANIC OR LATINO                                 23
  NOT HISPANIC OR LATINO                            632
[1] 2 2
[1] FALSE

Clustering(34) Variable = DEL PEAK  2(1P36.23) MUTATION ANALYSIS
D34V1, survival
                                sevent
clus2                              0   1
  DEL PEAK  2(1P36.23) MUTATED   182 145
  DEL PEAK  2(1P36.23) WILD-TYPE 298 414
  DEL PEAK  2(1P36.23) MUTATED DEL PEAK  2(1P36.23) WILD-TYPE 
                           327                            712 
  DEL PEAK  2(1P36.23) MUTATED DEL PEAK  2(1P36.23) WILD-TYPE 
                           145                            414 
$`DEL PEAK  2(1P36.23) MUTATED`
TCGA-02-0015 TCGA-02-0023 TCGA-02-0024 TCGA-02-0025 TCGA-02-0028 TCGA-02-0051 
       20.61        20.12        53.10        42.74        90.58        15.09 
TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 TCGA-02-0106 TCGA-02-0115 TCGA-02-0281 
       19.73        26.43        28.70        11.67        15.65         3.98 
TCGA-02-0285 TCGA-02-0290 TCGA-02-0446 TCGA-02-2483 TCGA-06-0124 TCGA-06-0137 
       13.87        15.95         9.27        15.32        20.38        26.70 
TCGA-06-0158 TCGA-06-0162 TCGA-06-0164 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 
       10.82         3.42        56.91         5.85        19.66         3.29 
TCGA-06-0171 TCGA-06-0175 TCGA-06-0184 TCGA-06-0190 TCGA-06-0192 TCGA-06-0195 
       13.12         4.04        69.90        10.42        38.96         7.40 
TCGA-06-0208 TCGA-06-0219 TCGA-06-0743 TCGA-06-0745 TCGA-06-0747 TCGA-06-0878 
        8.42         0.72        26.40         7.86         2.70         7.17 
TCGA-06-0879 TCGA-06-0882 TCGA-06-1084 TCGA-06-1087 TCGA-06-1801 TCGA-06-1802 
       40.41        20.78        23.93         4.04        11.84        15.32 
TCGA-06-1804 TCGA-06-2562 TCGA-06-2565 TCGA-06-5411 TCGA-06-5414 TCGA-06-5415 
       13.61        12.56        16.64         8.35         8.98         8.55 
TCGA-06-5859 TCGA-06-6693 TCGA-08-0244 TCGA-08-0344 TCGA-08-0345 TCGA-08-0375 
        4.57       120.56        22.68       115.86         1.74        12.23 
TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0510 TCGA-08-0514 
       18.02        15.35        13.97         0.72         4.27        11.08 
TCGA-08-0518 TCGA-08-0520 TCGA-08-0531 TCGA-12-0656 TCGA-12-0670 TCGA-12-0688 
       19.33        10.75         7.56        94.78        25.97        26.66 
TCGA-12-0769 TCGA-12-0776 TCGA-12-0778 TCGA-12-0820 TCGA-12-1093 TCGA-12-1094 
       15.06         9.73        14.93        18.48        15.98        12.23 
TCGA-12-1095 TCGA-12-1097 TCGA-12-1599 TCGA-12-3649 TCGA-12-3652 TCGA-14-0736 
       15.85        14.53        25.68        15.22        34.92        15.12 
TCGA-14-0786 TCGA-14-0787 TCGA-14-0862 TCGA-14-0865 TCGA-14-1396 TCGA-14-1458 
       23.05         2.24         2.89        16.50         1.12         6.67 
TCGA-14-1827 TCGA-14-1829 TCGA-16-0861 TCGA-16-1045 TCGA-16-1056 TCGA-19-0962 
        5.88         7.17         4.31        29.03        14.01         0.66 
TCGA-19-0963 TCGA-19-1386 TCGA-19-1387 TCGA-19-2619 TCGA-19-2620 TCGA-19-2629 
       14.27         9.07         5.95         9.67         4.87        24.23 
TCGA-19-5947 TCGA-19-5950 TCGA-19-5959 TCGA-26-1439 TCGA-26-6173 TCGA-27-1833 
        6.64        17.19        16.80        13.87         7.92        24.23 
TCGA-27-2521 TCGA-27-2524 TCGA-28-1750 TCGA-28-1752 TCGA-28-2502 TCGA-28-5211 
       10.39         7.59         8.35         8.48         0.66        11.77 
TCGA-28-6450 TCGA-32-1977 TCGA-32-1978 TCGA-32-2634 TCGA-32-2638 TCGA-32-5222 
        5.42         0.10        15.85        22.78        25.18        19.23 
TCGA-41-2572 TCGA-41-2575 TCGA-41-3393 TCGA-41-4097 TCGA-4W-AA9S TCGA-74-6575 
       13.35         9.53         4.44         0.20         4.14        20.91 
TCGA-76-4928 TCGA-76-4931 TCGA-76-6191 TCGA-76-6285 TCGA-76-6286 TCGA-76-6657 
        3.09         9.17        16.70         8.35        20.98         5.03 
TCGA-76-6661 TCGA-81-5910 TCGA-87-5896 TCGA-OX-A56R TCGA-RR-A6KA TCGA-RR-A6KC 
        0.23         1.61        26.30         5.92         6.28        20.55 
TCGA-CS-5390 TCGA-CS-5394 TCGA-CS-5396 TCGA-CS-6668 TCGA-CS-6670 TCGA-DB-5274 
       64.64         0.10         9.96         8.02         6.61        75.25 
TCGA-DB-5275 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-A4XA TCGA-DB-A4XG TCGA-DB-A4XH 
       47.93        50.17        44.52        18.84        72.95        31.63 
TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64U 
       24.20        25.48        30.12         5.98        31.40        27.81 
TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A75K TCGA-DH-5141 TCGA-DH-5144 TCGA-DH-A669 
       29.23        14.40        12.10        31.82         8.02        30.21 
TCGA-DH-A66F TCGA-DH-A7UR TCGA-DH-A7US TCGA-DU-5849 TCGA-DU-5852 TCGA-DU-5870 
       17.19        54.25        13.12        14.56         6.74       182.33 
TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6396 TCGA-DU-6397 
       17.49        15.16        52.11        22.42        75.16        46.06 
TCGA-DU-6400 TCGA-DU-6402 TCGA-DU-6405 TCGA-DU-6410 TCGA-DU-7006 TCGA-DU-7009 
        1.22         7.04        19.89         7.96        11.47       138.28 
TCGA-DU-7014 TCGA-DU-7018 TCGA-DU-7290 TCGA-DU-7294 TCGA-DU-7300 TCGA-DU-7302 
      117.40        30.67        10.36        94.32        62.01        60.30 
TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8164 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A6S2 
        5.10        23.74        21.40        15.48        14.17         8.65 
TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76R TCGA-DU-A7T6 
        2.70        77.98         5.98        11.41        21.30        17.98 
TCGA-DU-A7TG TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YO 
       44.42       134.27        78.21        95.57       130.78        75.02 
TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-FG-5962 TCGA-FG-5964 TCGA-FG-6692 TCGA-FG-7634 
       14.33         0.23        47.77        34.36        18.44        15.35 
TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8189 
       22.55        20.61        14.24        16.01        20.09        22.52 
TCGA-FG-A60K TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A710 TCGA-FG-A713 TCGA-FG-A87Q 
       17.82        15.02        16.44        36.66        20.45         5.72 
TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7471 TCGA-HT-7477 TCGA-HT-7480 TCGA-HT-7481 
        0.10         6.67         0.13        24.26        75.19        95.93 
TCGA-HT-7605 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7677 
        4.57         3.16        22.06         0.23        14.27        16.24 
TCGA-HT-7681 TCGA-HT-7687 TCGA-HT-7692 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7856 
       44.68         0.10         2.96         6.90        14.53        39.09 
TCGA-HT-7857 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7881 TCGA-HT-8010 
        0.23        37.15         0.33         0.13        35.47         1.64 
TCGA-HT-8012 TCGA-HT-8105 TCGA-HT-8109 TCGA-HT-8113 TCGA-HT-A4DV TCGA-HT-A5R9 
        9.40         6.25         5.56        29.59        26.04         0.07 
TCGA-HT-A5RA TCGA-HT-A615 TCGA-HT-A617 TCGA-HT-A619 TCGA-HT-A61C TCGA-HT-A74K 
       27.35        16.93        16.14        21.40        17.65        15.35 
TCGA-HT-A74L TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8322 
       11.05        29.92        19.89        40.18         4.31        17.82 
TCGA-HW-A5KJ TCGA-IK-8125 TCGA-KT-A74X TCGA-P5-A5EX TCGA-P5-A5F0 TCGA-P5-A5F4 
       20.35        42.77        14.40         1.64         4.11         0.76 
TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-QH-A65R TCGA-QH-A65V TCGA-QH-A65X 
       11.64         0.20         9.01        15.16        12.62        15.85 
TCGA-QH-A65Z TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X4 
       14.04        14.83        14.53         2.20         9.17        14.53 
TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6XC TCGA-QH-A86X TCGA-R8-A6MK TCGA-R8-A6ML 
       16.34        16.73         5.03        11.08        88.83        94.03 
TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A840 TCGA-RY-A847 
       32.65        59.38        30.87         5.46        28.08        30.67 
TCGA-S9-A6TS TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6U0 TCGA-S9-A6U2 
       62.17        37.84        34.49        31.33        22.95        23.64 
TCGA-S9-A6U5 TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WH TCGA-S9-A6WI 
       32.61       106.39        69.50        72.59        32.45        84.99 
TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ 
       31.10        19.86        15.91        15.16        14.07        36.13 
TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QY 
       22.32        23.51         8.19         2.04        17.03        28.37 
TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-TM-A7C5 TCGA-TM-A84G TCGA-TM-A84M TCGA-TM-A84O 
       13.02       169.84        49.32        40.64        24.79        33.24 
TCGA-TM-A84R TCGA-TM-A84S TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE 
       18.61        14.93        13.51         0.10         7.89        35.93 
TCGA-VV-A829 TCGA-VW-A7QS TCGA-W9-A837 
       37.05        23.21        51.06 

$`DEL PEAK  2(1P36.23) WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
       11.77         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0014 TCGA-02-0016 TCGA-02-0021 TCGA-02-0026 TCGA-02-0027 
       20.71        82.59        87.06        77.65        24.59        12.16 
TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 
        2.83        14.14         3.62        10.72        10.52        18.31 
TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 
        6.87        14.73         3.22        12.59         6.54         2.50 
TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0070 TCGA-02-0071 
       19.86         8.35         9.57         6.02        25.05         5.49 
TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 
       10.19        20.84        27.25        89.72        22.72        12.62 
TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 
       51.32         8.81        57.76        16.96         3.48        27.02 
TCGA-02-0104 TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 TCGA-02-0114 TCGA-02-0116 
       65.00        17.65        23.18        92.65        99.98        48.95 
TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0289 
       16.54        16.93        17.72        10.75        14.47        14.20 
TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 
       12.23         9.90         7.73        10.62         7.33        15.91 
TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 
       25.71         4.37        25.12        10.59        12.39        14.50 
TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 
       10.55        47.11        11.34        16.21         3.35        16.80 
TCGA-02-2470 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0125 
       12.92        15.45        20.32         2.70         6.15        47.61 
TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 
        6.94         3.98        22.72        33.67        12.95        25.35 
TCGA-06-0133 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 
       14.30        24.23        11.90         0.20        10.29         2.20 
TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 
       11.74         2.33        20.09        17.79        10.09         8.61 
TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 
       19.46        46.59        12.33        13.94        10.45         3.19 
TCGA-06-0159 TCGA-06-0160 TCGA-06-0165 TCGA-06-0173 TCGA-06-0174 TCGA-06-0176 
        9.44        11.80        10.65         4.47         3.22        91.00 
TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0185 TCGA-06-0187 
        4.18        88.14        20.25         3.65        73.84        27.22 
TCGA-06-0188 TCGA-06-0189 TCGA-06-0194 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 
       44.58        15.42         4.67         5.56         0.39         7.66 
TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 
        7.63         7.40        11.84         0.53        15.02        24.16 
TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 
       19.82        13.64        13.32        20.42        48.69        10.82 
TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 
        9.01         0.26        72.36         4.70         9.57         3.16 
TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 
       35.11        12.62         5.75         5.75         9.80         2.10 
TCGA-06-0650 TCGA-06-0686 TCGA-06-0744 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 
       23.57        14.20        46.88         2.70         0.92        43.46 
TCGA-06-0876 TCGA-06-0877 TCGA-06-0881 TCGA-06-0939 TCGA-06-1086 TCGA-06-1800 
       46.19         5.65        16.57        26.76         6.84        26.79 
TCGA-06-1805 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       33.90        15.32         1.08        12.49         4.93        17.65 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 
       30.64         5.95         5.98         4.37         0.43        31.50 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5412 TCGA-06-5413 TCGA-06-5416 TCGA-06-5418 
       11.74         3.55         4.54         8.81         6.71         2.73 
TCGA-06-5856 TCGA-06-5858 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 
        3.75         6.15         5.23         7.79         5.39         1.48 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.32        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-06-A5U0 TCGA-06-A5U1 TCGA-06-A6S0 TCGA-06-A6S1 TCGA-06-A7TK 
        4.96         4.70         1.87         3.12         2.56         5.39 
TCGA-06-A7TL TCGA-08-0245 TCGA-08-0246 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 
        5.42        37.84         4.18         8.42        25.71        12.16 
TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 
        9.80        29.23        65.33         1.28         8.42        17.95 
TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0380 
       24.56        31.10        37.58        22.29         3.39        14.93 
TCGA-08-0509 TCGA-08-0512 TCGA-08-0516 TCGA-08-0517 TCGA-08-0521 TCGA-08-0524 
       12.56        42.15        19.59        58.68         4.80         7.27 
TCGA-08-0525 TCGA-08-0529 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
       15.98        18.41        15.35        14.73        12.99        34.92 
TCGA-12-0620 TCGA-12-0654 TCGA-12-0657 TCGA-12-0662 TCGA-12-0691 TCGA-12-0692 
       10.45         7.59         0.10        38.17        12.13         3.65 
TCGA-12-0703 TCGA-12-0707 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0780 
       20.38        28.41        53.85        43.23         7.63        14.86 
TCGA-12-0818 TCGA-12-0819 TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 
       91.76        24.79        10.62        23.51        27.78        38.76 
TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 
        8.94        20.58       127.59         5.82         7.59        33.21 
TCGA-12-1092 TCGA-12-1096 TCGA-12-1098 TCGA-12-1099 TCGA-12-1598 TCGA-12-1600 
       21.73         9.11         3.98         4.14        15.65        14.73 
TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3650 TCGA-12-3651 
        6.77        59.77        44.02        26.93        10.95        12.69 
TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 
       14.53        14.93         3.22         2.04        11.97         0.95 
TCGA-14-0783 TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 
        6.21        11.24        13.78         3.25         1.35         5.39 
TCGA-14-0866 TCGA-14-0867 TCGA-14-0871 TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 
       26.33         2.04        28.93        15.95        19.30         0.79 
TCGA-14-1395 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 
        1.38         3.75        32.05        58.78        23.11         7.10 
TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1459 TCGA-14-1794 
        1.15        30.18         0.92        40.96        12.43         0.99 
TCGA-14-1795 TCGA-14-1821 TCGA-14-1823 TCGA-14-1825 TCGA-14-2554 TCGA-14-2555 
        1.97        17.79        17.85         7.63        17.49         7.96 
TCGA-14-3477 TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 TCGA-15-1447 
        3.78         3.42        13.78        50.53        19.10        53.19 
TCGA-15-1449 TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 TCGA-16-1047 
       13.28         3.91        17.59        26.07        16.37         4.57 
TCGA-16-1055 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 
       10.29         9.14        21.24        13.97         6.41        11.77 
TCGA-19-0957 TCGA-19-0960 TCGA-19-0964 TCGA-19-1385 TCGA-19-1388 TCGA-19-1389 
       21.90         8.61         3.39        10.75        12.95         4.64 
TCGA-19-1390 TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 
       25.38         3.65         7.17        12.66         3.25         0.13 
TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2631 TCGA-19-4065 
        1.08         7.53         0.16         4.08         7.00         7.04 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 
        8.02        18.90         4.73        12.10         1.78        22.49 
TCGA-19-5958 TCGA-19-5960 TCGA-19-A60I TCGA-19-A6J4 TCGA-19-A6J5 TCGA-26-1438 
       14.07        14.96        17.79         3.98        28.54        10.03 
TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 
        9.73        31.33         7.13         9.37         9.40        14.86 
TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6174 TCGA-26-A7UX 
        5.49         8.88        18.97         1.58         2.33        19.33 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 
        5.06        16.60         9.86        40.54        21.30        30.05 
TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2523 TCGA-27-2526 
       14.04        11.51        24.76        10.39        16.08         2.86 
TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1751 
       14.40        15.78         0.20         2.53         9.21         7.63 
TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2506 TCGA-28-2509 
        1.22         1.55         2.83         0.13         6.74         4.77 
TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 
        7.30         5.26        14.93        11.28        17.88        14.53 
TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 
       31.27        23.44        11.01        13.64         5.16        22.68 
TCGA-28-5220 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 TCGA-32-1979 TCGA-32-1980 
       12.76        15.39        21.07         0.49        19.50         1.18 
TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 
        4.67        12.69        14.86        16.93        12.23        20.78 
TCGA-32-2495 TCGA-32-2615 TCGA-32-2616 TCGA-32-2632 TCGA-32-4208 TCGA-32-4210 
       15.02        15.95         7.36         8.84        21.14         3.72 
TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-41-2571 TCGA-41-2573 TCGA-41-3392 
       12.59        19.86        10.85         0.85         8.94         0.99 
TCGA-41-3915 TCGA-41-5651 TCGA-41-6646 TCGA-4W-AA9T TCGA-74-6573 TCGA-74-6577 
       11.84        15.12        12.46        14.76         3.45         4.34 
TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4929 
       14.33         8.22         7.50         4.80         4.54         3.65 
TCGA-76-4934 TCGA-76-4935 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 
        2.53        10.78         3.29         2.70        11.38        17.06 
TCGA-76-6656 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5911 TCGA-CS-4938 
        4.83         9.27         7.73         7.79        17.72         4.70 
TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5393 TCGA-CS-5395 
        7.69        43.89        18.15        10.62        40.18        21.01 
TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 
        6.38        17.69        23.84        17.95        12.43         8.48 
TCGA-CS-6667 TCGA-CS-6669 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5276 TCGA-DB-5277 
        7.56         7.40       122.73        81.96        72.92        50.86 
TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD 
       36.56        78.28        46.42        30.21        46.72        39.78 
TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A64S TCGA-DB-A64X TCGA-DB-A75L TCGA-DB-A75M 
       37.45        33.57        27.45        18.51        11.24        17.88 
TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-A66B 
       30.74        16.18        19.96        30.31        14.40        42.05 
TCGA-DH-A66D TCGA-DH-A66G TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 
       27.81        17.19        13.38         3.45        18.61        18.02 
TCGA-DU-5851 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5871 TCGA-DU-6392 
       17.46        13.38         8.45         6.81        18.94       211.17 
TCGA-DU-6395 TCGA-DU-6399 TCGA-DU-6401 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6406 
       49.02        65.75        87.45        11.64       133.74        16.83 
TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6542 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7010 
       94.52       114.08         7.73        62.96       156.23        14.99 
TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7019 TCGA-DU-7292 
      105.21         6.54         8.84        90.77        26.30         7.96 
TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7301 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 
       18.94        44.02        25.91        23.31        41.98         2.76 
TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-A5TP TCGA-DU-A5TR 
       14.60        20.68        19.13        16.96        14.24        12.59 
TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S7 
       15.12         4.96         3.65         5.65        12.20         7.23 
TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC 
       26.76         7.13       124.50        77.88        42.31        23.51 
TCGA-DU-A7TD TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 
        7.50         0.56        50.14        67.46        41.13        79.99 
TCGA-E1-5307 TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7Z6 TCGA-F6-A8O4 TCGA-FG-5963 
       57.93        32.45        36.82        32.35         0.20        25.48 
TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-7636 
       36.82        18.77        14.93        24.99        23.97        17.88 
TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8188 TCGA-FG-8191 TCGA-FG-A4MT 
       20.09        12.95        13.68        14.96        32.61        38.27 
TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60L 
       10.72        18.38        18.71        23.70        14.76        16.41 
TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A711 TCGA-FG-A87N TCGA-FN-7833 
       22.26        28.54        10.78        48.69        13.58        27.52 
TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 
       11.54        40.11         0.03        16.54         3.75        17.42 
TCGA-HT-7476 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 
        6.54         6.38        40.34       106.95       172.77         4.01 
TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7606 TCGA-HT-7609 
        5.03        29.85        23.18       122.47        17.29        45.99 
TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7676 TCGA-HT-7680 TCGA-HT-7684 TCGA-HT-7686 
       56.09        57.60         0.16         0.76         6.05        42.74 
TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7693 TCGA-HT-7854 
       31.69        14.96         0.10         0.10        17.52        39.48 
TCGA-HT-7855 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7879 TCGA-HT-7880 
       19.23        50.63         0.49        23.61         3.68         5.33 
TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8011 TCGA-HT-8013 TCGA-HT-8015 
        3.72        11.28        31.43        16.24        63.55         0.10 
TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 
       37.87        33.01        12.23         0.10         0.46         2.50 
TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8114 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS 
       13.78         0.23        34.19        28.27        15.72         0.23 
TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A616 
        0.13        20.22         0.10         5.33         2.70         1.81 
TCGA-HT-A618 TCGA-HT-A61B TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74O TCGA-HW-7489 
       16.83        17.52         2.43        10.52         0.10         8.32 
TCGA-HW-7490 TCGA-HW-7493 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-A5KK 
       19.23        35.90        21.70        21.60        19.59        12.76 
TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW 
       20.81        20.71        19.00        14.40         0.23         6.71 
TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F6 TCGA-P5-A72U 
        2.37         2.30         5.88         7.63         1.28         0.16 
TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A733 TCGA-QH-A65S TCGA-QH-A6CS TCGA-QH-A6CW 
       10.42        13.25        13.61         2.53        19.33        13.61 
TCGA-QH-A6CX TCGA-QH-A6X3 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A870 TCGA-RY-A83Z 
       12.23        10.29         1.91        16.50        12.99         9.90 
TCGA-RY-A843 TCGA-RY-A845 TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TZ TCGA-S9-A6U1 
        2.07        19.59        87.12        18.77        28.70        17.62 
TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6WG TCGA-S9-A6WO 
       16.08        98.24        95.93         5.85        80.12        18.61 
TCGA-S9-A7IS TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7R2 
        7.92         7.13        20.02        15.06        13.12        10.39 
TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z 
       99.06        30.05        98.63        31.59        18.71        11.97 
TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C 
       49.45        48.33        34.78        48.39        24.92        16.18 
TCGA-TM-A84F TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84Q 
       59.05        30.44        28.08        24.16        40.83        25.38 
TCGA-TM-A84T TCGA-TQ-A7RH TCGA-TQ-A7RW TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CH 
       23.80        15.98        26.99        43.04        30.08        23.47 
TCGA-VV-A86M TCGA-VW-A8FI TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A 
       16.01         8.05        13.32        43.96        39.88        43.40 
TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       45.80        46.88        37.71        20.81 

  DEL PEAK  2(1P36.23) MUTATED DEL PEAK  2(1P36.23) WILD-TYPE 
                          0.07                           0.03 
  DEL PEAK  2(1P36.23) MUTATED DEL PEAK  2(1P36.23) WILD-TYPE 
                        182.33                         211.17 
  DEL PEAK  2(1P36.23) MUTATED DEL PEAK  2(1P36.23) WILD-TYPE 
                        15.850                         14.055 
[1] "0.1 - 182.3 (15.8)" "0.0 - 211.2 (14.1)"
[1] "hr=" "1.5"
D34V2, continuous
D34V3, binary
                                cls
clus                               0   1
  DEL PEAK  2(1P36.23) MUTATED   132 196
  DEL PEAK  2(1P36.23) WILD-TYPE 438 276
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  2(1P36.23) MUTATED    132  196
  DEL PEAK  2(1P36.23) WILD-TYPE  438  276
                        clus
vv                       DEL PEAK  2(1P36.23) MUTATED
  BRAIN                                           132
  CENTRAL NERVOUS SYSTEM                          196
                        clus
vv                       DEL PEAK  2(1P36.23) WILD-TYPE
  BRAIN                                             438
  CENTRAL NERVOUS SYSTEM                            276
[1] 2 2
[1] FALSE
D34V4, binary
                                cls
clus                               0   1
  DEL PEAK  2(1P36.23) MUTATED   130 198
  DEL PEAK  2(1P36.23) WILD-TYPE 300 414
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  2(1P36.23) MUTATED    130  198
  DEL PEAK  2(1P36.23) WILD-TYPE  300  414
        clus
vv       DEL PEAK  2(1P36.23) MUTATED DEL PEAK  2(1P36.23) WILD-TYPE
  FEMALE                          130                            300
  MALE                            198                            414
[1] 2 2
[1] FALSE
D34V5, continuous
                                vv
clus                             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  DEL PEAK  2(1P36.23) MUTATED            21                             4
  DEL PEAK  2(1P36.23) WILD-TYPE         155                            23
                                vv
clus                             OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  DEL PEAK  2(1P36.23) MUTATED                 43               132
  DEL PEAK  2(1P36.23) WILD-TYPE               75                46
                                vv
clus                             TREATED PRIMARY GBM
  DEL PEAK  2(1P36.23) MUTATED                     3
  DEL PEAK  2(1P36.23) WILD-TYPE                  15
                                vv
clus                             UNTREATED PRIMARY (DE NOVO) GBM
  DEL PEAK  2(1P36.23) MUTATED                               125
  DEL PEAK  2(1P36.23) WILD-TYPE                             400
D34V6, multiclass
                                 clus
vv                                DEL PEAK  2(1P36.23) MUTATED
  ASTROCYTOMA                                               21
  GLIOBLASTOMA MULTIFORME (GBM)                              4
  OLIGOASTROCYTOMA                                          43
  OLIGODENDROGLIOMA                                        132
  TREATED PRIMARY GBM                                        3
  UNTREATED PRIMARY (DE NOVO) GBM                          125
                                 clus
vv                                DEL PEAK  2(1P36.23) WILD-TYPE
  ASTROCYTOMA                                                155
  GLIOBLASTOMA MULTIFORME (GBM)                               23
  OLIGOASTROCYTOMA                                            75
  OLIGODENDROGLIOMA                                           46
  TREATED PRIMARY GBM                                         15
  UNTREATED PRIMARY (DE NOVO) GBM                            400
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D34V7, binary
                                cls
clus                               0   1
  DEL PEAK  2(1P36.23) MUTATED   121 207
  DEL PEAK  2(1P36.23) WILD-TYPE 353 361
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  2(1P36.23) MUTATED    121  207
  DEL PEAK  2(1P36.23) WILD-TYPE  353  361
     clus
vv    DEL PEAK  2(1P36.23) MUTATED DEL PEAK  2(1P36.23) WILD-TYPE
  NO                           121                            353
  YES                          207                            361
[1] 2 2
[1] FALSE
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK  2(1P36.23) MUTATED                                  1    11
  DEL PEAK  2(1P36.23) WILD-TYPE                                0    10
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK  2(1P36.23) MUTATED                          16   290
  DEL PEAK  2(1P36.23) WILD-TYPE                        48   632
D34V8, multiclass
                                  clus
vv                                 DEL PEAK  2(1P36.23) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            1
  ASIAN                                                      11
  BLACK OR AFRICAN AMERICAN                                  16
  WHITE                                                     290
                                  clus
vv                                 DEL PEAK  2(1P36.23) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              0
  ASIAN                                                        10
  BLACK OR AFRICAN AMERICAN                                    48
  WHITE                                                       632
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D34V9, binary
                                cls
clus                               0   1
  DEL PEAK  2(1P36.23) MUTATED     7 287
  DEL PEAK  2(1P36.23) WILD-TYPE  23 604
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  2(1P36.23) MUTATED      7  287
  DEL PEAK  2(1P36.23) WILD-TYPE   23  604
                        clus
vv                       DEL PEAK  2(1P36.23) MUTATED
  HISPANIC OR LATINO                                7
  NOT HISPANIC OR LATINO                          287
                        clus
vv                       DEL PEAK  2(1P36.23) WILD-TYPE
  HISPANIC OR LATINO                                 23
  NOT HISPANIC OR LATINO                            604
[1] 2 2
[1] FALSE

Clustering(35) Variable = DEL PEAK  3(1P32.3) MUTATION ANALYSIS
D35V1, survival
                               sevent
clus2                             0   1
  DEL PEAK  3(1P32.3) MUTATED   163  77
  DEL PEAK  3(1P32.3) WILD-TYPE 317 482
  DEL PEAK  3(1P32.3) MUTATED DEL PEAK  3(1P32.3) WILD-TYPE 
                          240                           799 
  DEL PEAK  3(1P32.3) MUTATED DEL PEAK  3(1P32.3) WILD-TYPE 
                           77                           482 
$`DEL PEAK  3(1P32.3) MUTATED`
TCGA-02-0028 TCGA-02-0059 TCGA-02-0074 TCGA-02-0115 TCGA-02-0269 TCGA-02-0281 
       90.58         9.57        10.19        15.65        10.75         3.98 
TCGA-02-0333 TCGA-02-0446 TCGA-02-2483 TCGA-02-2486 TCGA-06-0188 TCGA-06-0194 
        4.37         9.27        15.32        20.32        44.58         4.67 
TCGA-06-0241 TCGA-06-0410 TCGA-06-0646 TCGA-06-0649 TCGA-06-0743 TCGA-06-0749 
       48.69         4.70         5.75         2.10        26.40         2.70 
TCGA-06-0750 TCGA-06-1802 TCGA-06-2561 TCGA-06-2567 TCGA-06-5411 TCGA-08-0244 
        0.92        15.32        17.65         4.37         8.35        22.68 
TCGA-08-0344 TCGA-08-0390 TCGA-08-0392 TCGA-08-0510 TCGA-08-0529 TCGA-12-0654 
      115.86        13.97         0.72         4.27        18.41         7.59 
TCGA-12-0773 TCGA-12-0776 TCGA-12-1092 TCGA-12-3649 TCGA-14-0813 TCGA-14-1452 
       43.23         9.73        21.73        15.22         1.35         7.10 
TCGA-14-1455 TCGA-14-1458 TCGA-14-1795 TCGA-16-1045 TCGA-19-1387 TCGA-19-1390 
        0.92         6.67         1.97        29.03         5.95        25.38 
TCGA-19-2619 TCGA-19-2629 TCGA-19-5958 TCGA-26-1440 TCGA-26-1799 TCGA-26-5134 
        9.67        24.23        14.07         9.73         9.37         5.49 
TCGA-27-2521 TCGA-27-2527 TCGA-28-2514 TCGA-28-5213 TCGA-28-5215 TCGA-28-5216 
       10.39        14.40         5.26        31.27        11.01        13.64 
TCGA-28-5220 TCGA-41-4097 TCGA-74-6575 TCGA-76-4931 TCGA-76-6282 TCGA-OX-A56R 
       12.76         0.20        20.91         9.17        17.06         5.92 
TCGA-CS-5390 TCGA-CS-5394 TCGA-CS-5396 TCGA-CS-6668 TCGA-CS-6670 TCGA-DB-5274 
       64.64         0.10         9.96         8.02         6.61        75.25 
TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-A4XA TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L 
       50.17        44.52        18.84        72.95        31.63        24.20 
TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64U TCGA-DB-A64V 
       25.48        30.12         5.98        31.40        27.81        29.23 
TCGA-DB-A64W TCGA-DB-A75K TCGA-DH-5141 TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66F 
       14.40        12.10        31.82         8.02        30.21        17.19 
TCGA-DH-A7UR TCGA-DH-A7US TCGA-DU-5849 TCGA-DU-5870 TCGA-DU-5874 TCGA-DU-6393 
       54.25        13.12        14.56       182.33        15.16        52.11 
TCGA-DU-6394 TCGA-DU-6397 TCGA-DU-6400 TCGA-DU-6410 TCGA-DU-7009 TCGA-DU-7014 
       22.42        46.06         1.22         7.96       138.28       117.40 
TCGA-DU-7018 TCGA-DU-7294 TCGA-DU-7300 TCGA-DU-7302 TCGA-DU-8158 TCGA-DU-8161 
       30.67        94.32        62.01        60.30         5.10        23.74 
TCGA-DU-8164 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 
       21.40        15.48        14.17         8.65         2.70        77.98 
TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7TG 
        5.98        11.41        26.76        21.30        17.98        44.42 
TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YO TCGA-EZ-7264 
      134.27        78.21        95.57       130.78        75.02        14.33 
TCGA-F6-A8O3 TCGA-FG-5962 TCGA-FG-5964 TCGA-FG-7634 TCGA-FG-7638 TCGA-FG-7641 
        0.23        47.77        34.36        15.35        22.55        20.61 
TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8189 TCGA-FG-A60K TCGA-FG-A6IZ 
       14.24        16.01        20.09        22.52        17.82        15.02 
TCGA-FG-A6J1 TCGA-FG-A710 TCGA-FG-A713 TCGA-FG-A87Q TCGA-HT-7467 TCGA-HT-7468 
       16.44        36.66        20.45         5.72         0.10         6.67 
TCGA-HT-7471 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7605 TCGA-HT-7607 TCGA-HT-7608 
        0.13        75.19        95.93         4.57         3.16        22.06 
TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7677 TCGA-HT-7681 TCGA-HT-7687 TCGA-HT-7692 
        0.23        14.27        16.24        44.68         0.10         2.96 
TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7860 TCGA-HT-7874 
        6.90        14.53        39.09         0.23         0.49        37.15 
TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7881 TCGA-HT-8010 TCGA-HT-8012 TCGA-HT-8105 
        0.33         0.13        35.47         1.64         9.40         6.25 
TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8113 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R9 
        5.56        13.78        29.59         0.23        26.04         0.07 
TCGA-HT-A615 TCGA-HT-A617 TCGA-HT-A619 TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74K 
       16.93        16.14        21.40        17.65         2.43        15.35 
TCGA-HT-A74L TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8322 
       11.05        29.92        19.89        40.18         4.31        17.82 
TCGA-HW-A5KJ TCGA-IK-8125 TCGA-KT-A74X TCGA-P5-A5EX TCGA-P5-A5F0 TCGA-P5-A72Z 
       20.35        42.77        14.40         1.64         4.11        11.64 
TCGA-P5-A730 TCGA-QH-A65R TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CU 
        0.20        15.16        12.62        15.85        14.04        14.83 
TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A86X 
        2.20         9.17        14.53        16.34        16.73        11.08 
TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y 
       88.83        94.03        32.65        59.38        30.87         5.46 
TCGA-RY-A840 TCGA-RY-A847 TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6U2 
       28.08        30.67        37.84        34.49        31.33        23.64 
TCGA-S9-A6U5 TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WH TCGA-S9-A6WI 
       32.61       106.39        69.50        72.59        32.45        84.99 
TCGA-S9-A6WL TCGA-S9-A6WN TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IY 
       31.10        15.91        15.16        14.07        36.13        23.51 
TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 
        8.19         2.04        17.03        28.37        13.02       169.84 
TCGA-TM-A7C5 TCGA-TM-A84G TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84R TCGA-TM-A84S 
       49.32        40.64        24.79        33.24        18.61        14.93 
TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CE TCGA-VV-A829 TCGA-VW-A7QS TCGA-W9-A837 
       13.51         0.10        35.93        37.05        23.21        51.06 

$`DEL PEAK  3(1P32.3) WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
       11.77         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 
       20.71        82.59        20.61        87.06        77.65        20.12 
TCGA-02-0024 TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0033 TCGA-02-0034 
       53.10        42.74        24.59        12.16         2.83        14.14 
TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 
        3.62        10.72        10.52        18.31         6.87        14.73 
TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 
        3.22        15.09        12.59         6.54         2.50        19.86 
TCGA-02-0058 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 
        8.35         6.02        19.73        26.43        28.70        25.05 
TCGA-02-0071 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 
        5.49        20.84        27.25        89.72        22.72        12.62 
TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 
       51.32         8.81        57.76        16.96         3.48        27.02 
TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 TCGA-02-0114 
       65.00        11.67        17.65        23.18        92.65        99.98 
TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 TCGA-02-0271 TCGA-02-0285 
       48.95        16.54        16.93        17.72        14.47        13.87 
TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 
       14.20        15.95        12.23         9.90         7.73        10.62 
TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 
        7.33        15.91        25.71        25.12        10.59        12.39 
TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0451 TCGA-02-0456 
       14.50        10.55        47.11        11.34        16.21         3.35 
TCGA-02-2466 TCGA-02-2470 TCGA-02-2485 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 
       16.80        12.92        15.45         2.70         6.15        20.38 
TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 
       47.61         6.94         3.98        22.72        33.67        12.95 
TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 
       25.35        14.30        26.70        24.23        11.90         0.20 
TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 
       10.29         2.20        11.74         2.33        20.09        17.79 
TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 
       10.09         8.61        19.46        46.59        12.33        13.94 
TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 
       10.45         3.19        10.82         9.44        11.80         3.42 
TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 
       56.91        10.65         5.85        19.66         3.29        13.12 
TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 
        4.47         3.22         4.04        91.00         4.18        88.14 
TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0189 
       20.25         3.65        69.90        73.84        27.22        15.42 
TCGA-06-0190 TCGA-06-0192 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 
       10.42        38.96         7.40         5.56         0.39         7.66 
TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 
        8.42         7.63         7.40        11.84         0.53        15.02 
TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 
       24.16         0.72        19.82        13.64        13.32        20.42 
TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0412 TCGA-06-0413 
       10.82         9.01         0.26        72.36         9.57         3.16 
TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 TCGA-06-0648 TCGA-06-0650 TCGA-06-0686 
       35.11        12.62         5.75         9.80        23.57        14.20 
TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 
       46.88         7.86         2.70        43.46        46.19         5.65 
TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 
        7.17        40.41        16.57        20.78        26.76        23.93 
TCGA-06-1086 TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 TCGA-06-1804 TCGA-06-1805 
        6.84         4.04        26.79        11.84        13.61        33.90 
TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2562 TCGA-06-2563 
       15.32         1.08        12.49         4.93        12.56        30.64 
TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 
        5.95        16.64         5.98         0.43        31.50        11.74 
TCGA-06-5410 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 
        3.55         4.54         8.81         8.98         8.55         6.71 
TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 
        2.73         3.75         6.15         4.57         5.23         7.79 
TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 
        5.39         1.48       120.56         7.36         8.32        12.85 
TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-06-A5U0 TCGA-06-A5U1 
        4.77         1.55         4.77         4.96         4.70         1.87 
TCGA-06-A6S0 TCGA-06-A6S1 TCGA-06-A7TK TCGA-06-A7TL TCGA-08-0245 TCGA-08-0246 
        3.12         2.56         5.39         5.42        37.84         4.18 
TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 
        1.74         8.42        25.71        12.16         9.80        29.23 
TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 
       65.33         1.28         8.42        17.95        24.56        31.10 
TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 
       37.58        22.29         3.39        12.23        14.93        18.02 
TCGA-08-0389 TCGA-08-0509 TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 
       15.35        12.56        42.15        11.08        19.59        58.68 
TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0531 
       19.33        10.75         4.80         7.27        15.98         7.56 
TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0656 
       15.35        14.73        12.99        34.92        10.45        94.78 
TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 
        0.10        38.17        25.97        26.66        12.13         3.65 
TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0775 TCGA-12-0778 
       20.38        28.41        15.06        53.85         7.63        14.93 
TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 
       14.86        91.76        24.79        18.48        10.62        23.51 
TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 
       27.78        38.76         8.94        20.58       127.59         5.82 
TCGA-12-1090 TCGA-12-1091 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 
        7.59        33.21        15.98        12.23        15.85         9.11 
TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 
       14.53         3.98         4.14        15.65        25.68        14.73 
TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3650 TCGA-12-3651 
        6.77        59.77        44.02        26.93        10.95        12.69 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 
       34.92        14.53        14.93         3.22         2.04        15.12 
TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 
       11.97         0.95         6.21        23.05         2.24        11.24 
TCGA-14-0790 TCGA-14-0812 TCGA-14-0817 TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 
       13.78         3.25         5.39         2.89        16.50        26.33 
TCGA-14-0867 TCGA-14-0871 TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 
        2.04        28.93        15.95        19.30         0.79         1.38 
TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1453 
        1.12         3.75        32.05        58.78        23.11         1.15 
TCGA-14-1454 TCGA-14-1456 TCGA-14-1459 TCGA-14-1794 TCGA-14-1821 TCGA-14-1823 
       30.18        40.96        12.43         0.99        17.79        17.85 
TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-3477 
        7.63         5.88         7.17        17.49         7.96         3.78 
TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 TCGA-15-1447 TCGA-15-1449 
        3.42        13.78        50.53        19.10        53.19        13.28 
TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 TCGA-16-1047 
        3.91        17.59        26.07        16.37         4.31         4.57 
TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 
       10.29        14.01         9.14        21.24        13.97         6.41 
TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 
       11.77        21.90         8.61         0.66        14.27         3.39 
TCGA-19-1385 TCGA-19-1386 TCGA-19-1388 TCGA-19-1389 TCGA-19-1392 TCGA-19-1786 
       10.75         9.07        12.95         4.64         3.65         7.17 
TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 
       12.66         3.25         0.13         4.87         1.08         7.53 
TCGA-19-2624 TCGA-19-2625 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 
        0.16         4.08         7.00         7.04         6.64        17.19 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 
        8.02        18.90         4.73        12.10         1.78        22.49 
TCGA-19-5959 TCGA-19-5960 TCGA-19-A60I TCGA-19-A6J4 TCGA-19-A6J5 TCGA-26-1438 
       16.80        14.96        17.79         3.98        28.54        10.03 
TCGA-26-1439 TCGA-26-1442 TCGA-26-1443 TCGA-26-5132 TCGA-26-5133 TCGA-26-5135 
       13.87        31.33         7.13         9.40        14.86         8.88 
TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-26-A7UX TCGA-27-1830 
       18.97         1.58         7.92         2.33        19.33         5.06 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 
       16.60         9.86        24.23        40.54        21.30        30.05 
TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2523 TCGA-27-2524 
       14.04        11.51        24.76        10.39        16.08         7.59 
TCGA-27-2526 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 
        2.86        15.78         0.20         2.53         9.21         8.35 
TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 
        7.63         8.48         1.22         1.55         2.83         0.13 
TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 TCGA-28-2513 TCGA-28-5204 TCGA-28-5207 
        0.66         6.74         4.77         7.30        14.93        11.28 
TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5214 TCGA-28-5218 TCGA-28-5219 
       17.88        14.53        11.77        23.44         5.16        22.68 
TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 
        5.42        15.39        21.07         0.49         0.10        15.85 
TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 
       19.50         1.18         4.67        12.69        14.86        16.93 
TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2616 TCGA-32-2632 
       12.23        20.78        15.02        15.95         7.36         8.84 
TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 
       22.78        25.18        21.14         3.72        12.59        19.86 
TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 
       10.85        19.23         0.85        13.35         8.94         9.53 
TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-5651 TCGA-41-6646 TCGA-4W-AA9S 
        0.99         4.44        11.84        15.12        12.46         4.14 
TCGA-4W-AA9T TCGA-74-6573 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 
       14.76         3.45         4.34        14.33         8.22         7.50 
TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4934 TCGA-76-4935 
        4.80         4.54         3.09         3.65         2.53        10.78 
TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6285 TCGA-76-6286 
       16.70         3.29         2.70        11.38         8.35        20.98 
TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 
        4.83         5.03         0.23         9.27         7.73         7.79 
TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 TCGA-RR-A6KA TCGA-RR-A6KC TCGA-CS-4938 
        1.61        17.72        26.30         6.28        20.55         4.70 
TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5393 TCGA-CS-5395 
        7.69        43.89        18.15        10.62        40.18        21.01 
TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 
        6.38        17.69        23.84        17.95        12.43         8.48 
TCGA-CS-6667 TCGA-CS-6669 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5275 TCGA-DB-5276 
        7.56         7.40       122.73        81.96        47.93        72.92 
TCGA-DB-5277 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XB TCGA-DB-A4XC 
       50.86        36.56        78.28        46.42        30.21        46.72 
TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A64S TCGA-DB-A64X TCGA-DB-A75L 
       39.78        37.45        33.57        27.45        18.51        11.24 
TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5142 TCGA-DH-5143 
       17.88        30.74        16.18        19.96        30.31        14.40 
TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66G TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV 
       42.05        27.81        17.19        13.38         3.45        18.61 
TCGA-DU-5847 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 
       18.02        17.46         6.74        13.38         8.45         6.81 
TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-6392 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6399 
       18.94        17.49       211.17        49.02        75.16        65.75 
TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 
       87.45         7.04        11.64       133.74        19.89        16.83 
TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 
       94.52       114.08         7.73        11.47        62.96       156.23 
TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7019 
       14.99       105.21         6.54         8.84        90.77        26.30 
TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7301 TCGA-DU-7304 
       10.36         7.96        18.94        44.02        25.91        23.31 
TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8165 TCGA-DU-8166 
       41.98         2.76        14.60        20.68        19.13        16.96 
TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW 
       14.24        12.59        15.12         4.96         3.65         5.65 
TCGA-DU-A5TY TCGA-DU-A6S7 TCGA-DU-A76O TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB 
       12.20         7.23         7.13       124.50        77.88        42.31 
TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 
       23.51         7.50         0.56        50.14        67.46        41.13 
TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7Z6 TCGA-F6-A8O4 
       79.99        57.93        32.45        36.82        32.35         0.20 
TCGA-FG-5963 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 
       25.48        36.82        18.77        14.93        24.99        23.97 
TCGA-FG-6692 TCGA-FG-7636 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8188 
       18.44        17.88        20.09        12.95        13.68        14.96 
TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY 
       32.61        38.27        10.72        18.38        18.71        23.70 
TCGA-FG-A60J TCGA-FG-A60L TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A711 
       14.76        16.41        22.26        28.54        10.78        48.69 
TCGA-FG-A87N TCGA-FN-7833 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7472 TCGA-HT-7473 
       13.58        27.52        11.54        40.11         0.03        16.54 
TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 
        3.75        17.42         6.54        24.26         6.38        40.34 
TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 
      106.95       172.77         4.01         5.03        29.85        23.18 
TCGA-HT-7604 TCGA-HT-7606 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7676 
      122.47        17.29        45.99        56.09        57.60         0.16 
TCGA-HT-7680 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 
        0.76         6.05        42.74        31.69        14.96         0.10 
TCGA-HT-7691 TCGA-HT-7693 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7858 TCGA-HT-7873 
        0.10        17.52        39.48        19.23        50.63        23.61 
TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8011 
        3.68         5.33         3.72        11.28        31.43        16.24 
TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8106 
       63.55         0.10        37.87        33.01        12.23         0.10 
TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8111 TCGA-HT-8114 TCGA-HT-8563 TCGA-HT-8564 
        0.46         2.50         0.23        34.19        28.27        15.72 
TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 
        0.13        20.22        27.35         0.10         5.33         2.70 
TCGA-HT-A616 TCGA-HT-A618 TCGA-HT-A61B TCGA-HT-A74J TCGA-HT-A74O TCGA-HW-7489 
        1.81        16.83        17.52        10.52         0.10         8.32 
TCGA-HW-7490 TCGA-HW-7493 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-A5KK 
       19.23        35.90        21.70        21.60        19.59        12.76 
TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW 
       20.81        20.71        19.00        14.40         0.23         6.71 
TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 
        2.37         2.30         5.88         7.63         0.76         1.28 
TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A731 TCGA-P5-A733 TCGA-QH-A65S 
        0.16        10.42        13.25         9.01        13.61         2.53 
TCGA-QH-A6CS TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6X3 TCGA-QH-A6X9 
       19.33        14.53        13.61        12.23        10.29         1.91 
TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A870 TCGA-RY-A83Z TCGA-RY-A843 TCGA-RY-A845 
       16.50         5.03        12.99         9.90         2.07        19.59 
TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 
       62.17        87.12        18.77        28.70        22.95        17.62 
TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6WG TCGA-S9-A6WM 
       16.08        98.24        95.93         5.85        80.12        19.86 
TCGA-S9-A6WO TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7QW 
       18.61         7.92        22.32         7.13        20.02        15.06 
TCGA-S9-A7QX TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 
       13.12        10.39        99.06        30.05        98.63        31.59 
TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7CA TCGA-TM-A7CF 
       18.71        11.97        49.45        48.33        34.78        48.39 
TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J 
       24.92        16.18        59.05        30.44        28.08        24.16 
TCGA-TM-A84L TCGA-TM-A84Q TCGA-TM-A84T TCGA-TQ-A7RH TCGA-TQ-A7RW TCGA-VM-A8C8 
       40.83        25.38        23.80        15.98        26.99        43.04 
TCGA-VM-A8C9 TCGA-VM-A8CD TCGA-VM-A8CH TCGA-VV-A86M TCGA-VW-A8FI TCGA-WH-A86K 
       30.08         7.89        23.47        16.01         8.05        13.32 
TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D 
       43.96        39.88        43.40        45.80        46.88        37.71 
TCGA-WY-A85E 
       20.81 

  DEL PEAK  3(1P32.3) MUTATED DEL PEAK  3(1P32.3) WILD-TYPE 
                         0.07                          0.03 
  DEL PEAK  3(1P32.3) MUTATED DEL PEAK  3(1P32.3) WILD-TYPE 
                       182.33                        211.17 
  DEL PEAK  3(1P32.3) MUTATED DEL PEAK  3(1P32.3) WILD-TYPE 
                       16.075                        14.270 
[1] "0.1 - 182.3 (16.1)" "0.0 - 211.2 (14.3)"
[1] "hr=" "2.3"
D35V2, continuous
D35V3, binary
                               cls
clus                              0   1
  DEL PEAK  3(1P32.3) MUTATED    60 181
  DEL PEAK  3(1P32.3) WILD-TYPE 510 291
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  3(1P32.3) MUTATED     60  181
  DEL PEAK  3(1P32.3) WILD-TYPE  510  291
                        clus
vv                       DEL PEAK  3(1P32.3) MUTATED
  BRAIN                                           60
  CENTRAL NERVOUS SYSTEM                         181
                        clus
vv                       DEL PEAK  3(1P32.3) WILD-TYPE
  BRAIN                                            510
  CENTRAL NERVOUS SYSTEM                           291
[1] 2 2
[1] FALSE
D35V4, binary
                               cls
clus                              0   1
  DEL PEAK  3(1P32.3) MUTATED   100 141
  DEL PEAK  3(1P32.3) WILD-TYPE 330 471
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  3(1P32.3) MUTATED    100  141
  DEL PEAK  3(1P32.3) WILD-TYPE  330  471
        clus
vv       DEL PEAK  3(1P32.3) MUTATED DEL PEAK  3(1P32.3) WILD-TYPE
  FEMALE                         100                           330
  MALE                           141                           471
[1] 2 2
[1] FALSE
D35V5, continuous
                               vv
clus                            ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  DEL PEAK  3(1P32.3) MUTATED            13                             1
  DEL PEAK  3(1P32.3) WILD-TYPE         163                            26
                               vv
clus                            OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  DEL PEAK  3(1P32.3) MUTATED                 37               131
  DEL PEAK  3(1P32.3) WILD-TYPE               81                47
                               vv
clus                            TREATED PRIMARY GBM
  DEL PEAK  3(1P32.3) MUTATED                     2
  DEL PEAK  3(1P32.3) WILD-TYPE                  16
                               vv
clus                            UNTREATED PRIMARY (DE NOVO) GBM
  DEL PEAK  3(1P32.3) MUTATED                                57
  DEL PEAK  3(1P32.3) WILD-TYPE                             468
D35V6, multiclass
                                 clus
vv                                DEL PEAK  3(1P32.3) MUTATED
  ASTROCYTOMA                                              13
  GLIOBLASTOMA MULTIFORME (GBM)                             1
  OLIGOASTROCYTOMA                                         37
  OLIGODENDROGLIOMA                                       131
  TREATED PRIMARY GBM                                       2
  UNTREATED PRIMARY (DE NOVO) GBM                          57
                                 clus
vv                                DEL PEAK  3(1P32.3) WILD-TYPE
  ASTROCYTOMA                                               163
  GLIOBLASTOMA MULTIFORME (GBM)                              26
  OLIGOASTROCYTOMA                                           81
  OLIGODENDROGLIOMA                                          47
  TREATED PRIMARY GBM                                        16
  UNTREATED PRIMARY (DE NOVO) GBM                           468
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D35V7, binary
                               cls
clus                              0   1
  DEL PEAK  3(1P32.3) MUTATED    58 183
  DEL PEAK  3(1P32.3) WILD-TYPE 416 385
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  3(1P32.3) MUTATED     58  183
  DEL PEAK  3(1P32.3) WILD-TYPE  416  385
     clus
vv    DEL PEAK  3(1P32.3) MUTATED DEL PEAK  3(1P32.3) WILD-TYPE
  NO                           58                           416
  YES                         183                           385
[1] 2 2
[1] FALSE
                               vv
clus                            AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK  3(1P32.3) MUTATED                                  1     7
  DEL PEAK  3(1P32.3) WILD-TYPE                                0    14
                               vv
clus                            BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK  3(1P32.3) MUTATED                           8   217
  DEL PEAK  3(1P32.3) WILD-TYPE                        56   705
D35V8, multiclass
                                  clus
vv                                 DEL PEAK  3(1P32.3) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                           1
  ASIAN                                                      7
  BLACK OR AFRICAN AMERICAN                                  8
  WHITE                                                    217
                                  clus
vv                                 DEL PEAK  3(1P32.3) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                             0
  ASIAN                                                       14
  BLACK OR AFRICAN AMERICAN                                   56
  WHITE                                                      705
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D35V9, binary
                               cls
clus                              0   1
  DEL PEAK  3(1P32.3) MUTATED     7 210
  DEL PEAK  3(1P32.3) WILD-TYPE  23 681
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  3(1P32.3) MUTATED      7  210
  DEL PEAK  3(1P32.3) WILD-TYPE   23  681
                        clus
vv                       DEL PEAK  3(1P32.3) MUTATED
  HISPANIC OR LATINO                               7
  NOT HISPANIC OR LATINO                         210
                        clus
vv                       DEL PEAK  3(1P32.3) WILD-TYPE
  HISPANIC OR LATINO                                23
  NOT HISPANIC OR LATINO                           681
[1] 2 2
[1] FALSE

Clustering(36) Variable = DEL PEAK  4(1P22.1) MUTATION ANALYSIS
D36V1, survival
                               sevent
clus2                             0   1
  DEL PEAK  4(1P22.1) MUTATED   156  63
  DEL PEAK  4(1P22.1) WILD-TYPE 324 496
  DEL PEAK  4(1P22.1) MUTATED DEL PEAK  4(1P22.1) WILD-TYPE 
                          219                           820 
  DEL PEAK  4(1P22.1) MUTATED DEL PEAK  4(1P22.1) WILD-TYPE 
                           63                           496 
$`DEL PEAK  4(1P22.1) MUTATED`
TCGA-02-0015 TCGA-02-0024 TCGA-02-0027 TCGA-02-0028 TCGA-02-0038 TCGA-02-0043 
       20.61        53.10        12.16        90.58        10.72        18.31 
TCGA-02-0083 TCGA-02-0451 TCGA-06-0122 TCGA-06-0133 TCGA-06-0169 TCGA-06-0175 
       22.72        16.21         6.15        14.30         3.29         4.04 
TCGA-06-1802 TCGA-06-2565 TCGA-06-5411 TCGA-06-A5U1 TCGA-08-0244 TCGA-08-0344 
       15.32        16.64         8.35         1.87        22.68       115.86 
TCGA-08-0347 TCGA-08-0348 TCGA-08-0392 TCGA-08-0510 TCGA-12-0615 TCGA-12-0691 
       25.71        12.16         0.72         4.27        15.35        12.13 
TCGA-12-0819 TCGA-12-0827 TCGA-12-3652 TCGA-14-1452 TCGA-16-1047 TCGA-16-1055 
       24.79        38.76        34.92         7.10         4.57        10.29 
TCGA-16-1062 TCGA-19-0964 TCGA-19-1387 TCGA-19-1390 TCGA-19-2619 TCGA-19-2629 
       21.24         3.39         5.95        25.38         9.67        24.23 
TCGA-19-5953 TCGA-19-5959 TCGA-26-1440 TCGA-27-1837 TCGA-28-2502 TCGA-28-5208 
        4.73        16.80         9.73        14.04         0.66        17.88 
TCGA-28-5213 TCGA-32-4719 TCGA-41-5651 TCGA-74-6575 TCGA-76-6285 TCGA-CS-4944 
       31.27        10.85        15.12        20.91         8.35        10.62 
TCGA-CS-5390 TCGA-CS-5394 TCGA-CS-5396 TCGA-CS-6668 TCGA-CS-6670 TCGA-DB-5274 
       64.64         0.10         9.96         8.02         6.61        75.25 
TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5281 TCGA-DB-A4XA TCGA-DB-A4XG TCGA-DB-A4XH 
       50.17        44.52        78.28        18.84        72.95        31.63 
TCGA-DB-A64L TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64U TCGA-DB-A64V 
       24.20        30.12         5.98        31.40        27.81        29.23 
TCGA-DB-A64W TCGA-DB-A75K TCGA-DH-5141 TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66F 
       14.40        12.10        31.82         8.02        30.21        17.19 
TCGA-DH-A7UR TCGA-DH-A7US TCGA-DU-5849 TCGA-DU-5870 TCGA-DU-5874 TCGA-DU-6393 
       54.25        13.12        14.56       182.33        15.16        52.11 
TCGA-DU-6394 TCGA-DU-6397 TCGA-DU-6400 TCGA-DU-6410 TCGA-DU-7009 TCGA-DU-7014 
       22.42        46.06         1.22         7.96       138.28       117.40 
TCGA-DU-7018 TCGA-DU-7294 TCGA-DU-7300 TCGA-DU-7302 TCGA-DU-8158 TCGA-DU-8164 
       30.67        94.32        62.01        60.30         5.10        21.40 
TCGA-DU-8168 TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S8 TCGA-DU-A76R 
       14.17         8.65         2.70        77.98         5.98        21.30 
TCGA-DU-A7T6 TCGA-DU-A7TG TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 
       17.98        44.42       134.27        78.21        95.57       130.78 
TCGA-E1-A7YO TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-FG-5962 TCGA-FG-5964 TCGA-FG-7634 
       75.02        14.33         0.23        47.77        34.36        15.35 
TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8189 
       22.55        20.61        14.24        16.01        20.09        22.52 
TCGA-FG-A60K TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A710 TCGA-FG-A713 TCGA-HT-7467 
       17.82        15.02        16.44        36.66        20.45         0.10 
TCGA-HT-7468 TCGA-HT-7471 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7605 TCGA-HT-7607 
        6.67         0.13        75.19        95.93         4.57         3.16 
TCGA-HT-7608 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7677 TCGA-HT-7681 TCGA-HT-7687 
       22.06         0.23        14.27        16.24        44.68         0.10 
TCGA-HT-7692 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7874 
        2.96         6.90        14.53        39.09         0.23        37.15 
TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7881 TCGA-HT-8010 TCGA-HT-8012 TCGA-HT-8105 
        0.33         0.13        35.47         1.64         9.40         6.25 
TCGA-HT-8109 TCGA-HT-8113 TCGA-HT-A4DV TCGA-HT-A5R9 TCGA-HT-A615 TCGA-HT-A619 
        5.56        29.59        26.04         0.07        16.93        21.40 
TCGA-HT-A61C TCGA-HT-A74K TCGA-HT-A74L TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7491 
       17.65        15.35        11.05        29.92        19.89        40.18 
TCGA-HW-7495 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-IK-8125 TCGA-KT-A74X TCGA-P5-A5EX 
        4.31        17.82        20.35        42.77        14.40         1.64 
TCGA-P5-A5F0 TCGA-P5-A5F4 TCGA-P5-A72Z TCGA-P5-A730 TCGA-QH-A65R TCGA-QH-A65V 
        4.11         0.76        11.64         0.20        15.16        12.62 
TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CU TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X4 
       15.85        14.04        14.83         2.20         9.17        14.53 
TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A86X TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO 
       16.34        16.73        11.08        88.83        94.03        32.65 
TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A840 TCGA-RY-A847 TCGA-S9-A6TW 
       59.38        30.87         5.46        28.08        30.67        37.84 
TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6UB TCGA-S9-A6WD 
       34.49        31.33        23.64        32.61       106.39        69.50 
TCGA-S9-A6WE TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WN TCGA-S9-A6WP 
       72.59        32.45        84.99        31.10        15.91        15.16 
TCGA-S9-A7IQ TCGA-S9-A7IY TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QY 
       36.13        23.51         8.19         2.04        17.03        28.37 
TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A89Z TCGA-TM-A7C5 TCGA-TM-A84G TCGA-TM-A84M 
       13.02       169.84        11.97        49.32        40.64        24.79 
TCGA-TM-A84O TCGA-TM-A84R TCGA-TM-A84S TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CE 
       33.24        18.61        14.93        13.51         0.10        35.93 
TCGA-VV-A829 TCGA-VW-A7QS TCGA-W9-A837 
       37.05        23.21        51.06 

$`DEL PEAK  4(1P22.1) WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
       11.77         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0014 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0025 
       20.71        82.59        87.06        77.65        20.12        42.74 
TCGA-02-0026 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 TCGA-02-0039 TCGA-02-0046 
       24.59         2.83        14.14         3.62        10.52         6.87 
TCGA-02-0047 TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 
       14.73         3.22        15.09        12.59         6.54         2.50 
TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 
       19.86         8.35         9.57         6.02        19.73        26.43 
TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 
       28.70        25.05         5.49        10.19        20.84        27.25 
TCGA-02-0080 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 
       89.72        12.62        51.32         8.81        57.76        16.96 
TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 
        3.48        27.02        65.00        11.67        17.65        23.18 
TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 
       92.65        99.98        15.65        48.95        16.54        16.93 
TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 
       17.72        10.75        14.47         3.98        13.87        14.20 
TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 
       15.95        12.23         9.90         7.73        10.62         7.33 
TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 
       15.91        25.71         4.37        25.12        10.59        12.39 
TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0456 
       14.50        10.55        47.11        11.34         9.27         3.35 
TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 
       16.80        12.92        15.32        15.45        20.32         2.70 
TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 
       20.38        47.61         6.94         3.98        22.72        33.67 
TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 
       12.95        25.35        26.70        24.23        11.90         0.20 
TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 
       10.29         2.20        11.74         2.33        20.09        17.79 
TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 
       10.09         8.61        19.46        46.59        12.33        13.94 
TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 
       10.45         3.19        10.82         9.44        11.80         3.42 
TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 TCGA-06-0171 TCGA-06-0173 
       56.91        10.65         5.85        19.66        13.12         4.47 
TCGA-06-0174 TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 
        3.22        91.00         4.18        88.14        20.25         3.65 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 
       69.90        73.84        27.22        44.58        15.42        10.42 
TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 
       38.96         4.67         7.40         5.56         0.39         7.66 
TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 
        8.42         7.63         7.40        11.84         0.53        15.02 
TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 
       24.16         0.72        19.82        13.64        13.32        20.42 
TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 
       48.69        10.82         9.01         0.26        72.36         4.70 
TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
        9.57         3.16        35.11        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1084 TCGA-06-1086 TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 TCGA-06-1804 
       23.93         6.84         4.04        26.79        11.84        13.61 
TCGA-06-1805 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       33.90        15.32         1.08        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 
       12.56        30.64         5.95         5.98         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 
       31.50        11.74         3.55         4.54         8.81         8.98 
TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 
        8.55         6.71         2.73         3.75         6.15         4.57 
TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 
        5.23         7.79         5.39         1.48       120.56         7.36 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
        8.32        12.85         4.77         1.55         4.77         4.96 
TCGA-06-A5U0 TCGA-06-A6S0 TCGA-06-A6S1 TCGA-06-A7TK TCGA-06-A7TL TCGA-08-0245 
        4.70         3.12         2.56         5.39         5.42        37.84 
TCGA-08-0246 TCGA-08-0345 TCGA-08-0346 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 
        4.18         1.74         8.42         9.80        29.23        65.33 
TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 
        1.28         8.42        17.95        24.56        31.10        37.58 
TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 
       22.29         3.39        12.23        14.93        18.02        15.35 
TCGA-08-0390 TCGA-08-0509 TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 
       13.97        12.56        42.15        11.08        19.59        58.68 
TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 
       19.33        10.75         4.80         7.27        15.98        18.41 
TCGA-08-0531 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0654 
        7.56        14.73        12.99        34.92        10.45         7.59 
TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0692 
       94.78         0.10        38.17        25.97        26.66         3.65 
TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 
       20.38        28.41        15.06        53.85        43.23         7.63 
TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0820 TCGA-12-0821 
        9.73        14.93        14.86        91.76        18.48        10.62 
TCGA-12-0822 TCGA-12-0826 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 
       23.51        27.78         8.94        20.58       127.59         5.82 
TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 
        7.59        33.21        21.73        15.98        12.23        15.85 
TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 TCGA-12-1598 TCGA-12-1599 
        9.11        14.53         3.98         4.14        15.65        25.68 
TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 
       14.73         6.77        59.77        44.02        26.93        15.22 
TCGA-12-3650 TCGA-12-3651 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 
       10.95        12.69        14.53        14.93         3.22         2.04 
TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 
       15.12        11.97         0.95         6.21        23.05         2.24 
TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 
       11.24        13.78         3.25         1.35         5.39         2.89 
TCGA-14-0865 TCGA-14-0866 TCGA-14-0867 TCGA-14-0871 TCGA-14-1034 TCGA-14-1037 
       16.50        26.33         2.04        28.93        15.95        19.30 
TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 
        0.79         1.38         1.12         3.75        32.05        58.78 
TCGA-14-1451 TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 
       23.11         1.15        30.18         0.92        40.96         6.67 
TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 TCGA-14-1823 TCGA-14-1825 
       12.43         0.99         1.97        17.79        17.85         7.63 
TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-3477 TCGA-14-4157 
        5.88         7.17        17.49         7.96         3.78         3.42 
TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 TCGA-15-1447 TCGA-15-1449 TCGA-16-0846 
       13.78        50.53        19.10        53.19        13.28         3.91 
TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 TCGA-16-1056 
       17.59        26.07        16.37         4.31        29.03        14.01 
TCGA-16-1060 TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 
        9.14        13.97         6.41        11.77        21.90         8.61 
TCGA-19-0962 TCGA-19-0963 TCGA-19-1385 TCGA-19-1386 TCGA-19-1388 TCGA-19-1389 
        0.66        14.27        10.75         9.07        12.95         4.64 
TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2620 
        3.65         7.17        12.66         3.25         0.13         4.87 
TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2631 TCGA-19-4065 
        1.08         7.53         0.16         4.08         7.00         7.04 
TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5954 TCGA-19-5955 
        6.64        17.19         8.02        18.90        12.10         1.78 
TCGA-19-5956 TCGA-19-5958 TCGA-19-5960 TCGA-19-A60I TCGA-19-A6J4 TCGA-19-A6J5 
       22.49        14.07        14.96        17.79         3.98        28.54 
TCGA-26-1438 TCGA-26-1439 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 
       10.03        13.87        31.33         7.13         9.37         9.40 
TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 
       14.86         5.49         8.88        18.97         1.58         7.92 
TCGA-26-6174 TCGA-26-A7UX TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 
        2.33        19.33         5.06        16.60         9.86        24.23 
TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 
       40.54        21.30        30.05        11.51        24.76        10.39 
TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 
       10.39        16.08         7.59         2.86        14.40        15.78 
TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 
        0.20         2.53         9.21         8.35         7.63         8.48 
TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2506 TCGA-28-2509 
        1.22         1.55         2.83         0.13         6.74         4.77 
TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5209 TCGA-28-5211 
        7.30         5.26        14.93        11.28        14.53        11.77 
TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 
       23.44        11.01        13.64         5.16        22.68        12.76 
TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 
        5.42        15.39        21.07         0.49         0.10        15.85 
TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 
       19.50         1.18         4.67        12.69        14.86        16.93 
TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2616 TCGA-32-2632 
       12.23        20.78        15.02        15.95         7.36         8.84 
TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 
       22.78        25.18        21.14         3.72        12.59        19.86 
TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 
       19.23         0.85        13.35         8.94         9.53         0.99 
TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-6646 TCGA-4W-AA9S TCGA-4W-AA9T 
        4.44        11.84         0.20        12.46         4.14        14.76 
TCGA-74-6573 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 
        3.45         4.34        14.33         8.22         7.50         4.80 
TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 
        4.54         3.09         3.65         9.17         2.53        10.78 
TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6286 
       16.70         3.29         2.70        11.38        17.06        20.98 
TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 
        4.83         5.03         0.23         9.27         7.73         7.79 
TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 TCGA-OX-A56R TCGA-RR-A6KA TCGA-RR-A6KC 
        1.61        17.72        26.30         5.92         6.28        20.55 
TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-5393 TCGA-CS-5395 
        4.70         7.69        43.89        18.15        40.18        21.01 
TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 
        6.38        17.69        23.84        17.95        12.43         8.48 
TCGA-CS-6667 TCGA-CS-6669 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5275 TCGA-DB-5276 
        7.56         7.40       122.73        81.96        47.93        72.92 
TCGA-DB-5277 TCGA-DB-5280 TCGA-DB-A4X9 TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD 
       50.86        36.56        46.42        30.21        46.72        39.78 
TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A64O TCGA-DB-A64S TCGA-DB-A64X TCGA-DB-A75L 
       37.45        33.57        25.48        27.45        18.51        11.24 
TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5142 TCGA-DH-5143 
       17.88        30.74        16.18        19.96        30.31        14.40 
TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66G TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV 
       42.05        27.81        17.19        13.38         3.45        18.61 
TCGA-DU-5847 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 
       18.02        17.46         6.74        13.38         8.45         6.81 
TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-6392 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6399 
       18.94        17.49       211.17        49.02        75.16        65.75 
TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 
       87.45         7.04        11.64       133.74        19.89        16.83 
TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 
       94.52       114.08         7.73        11.47        62.96       156.23 
TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7019 
       14.99       105.21         6.54         8.84        90.77        26.30 
TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7301 TCGA-DU-7304 
       10.36         7.96        18.94        44.02        25.91        23.31 
TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8165 
       41.98         2.76        23.74        14.60        20.68        19.13 
TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT 
       16.96        15.48        14.24        12.59        15.12         4.96 
TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S7 TCGA-DU-A76K TCGA-DU-A76L 
        3.65         5.65        12.20         7.23        11.41        26.76 
TCGA-DU-A76O TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD 
        7.13       124.50        77.88        42.31        23.51         7.50 
TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 
        0.56        50.14        67.46        41.13        79.99        57.93 
TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7Z6 TCGA-F6-A8O4 TCGA-FG-5963 TCGA-FG-5965 
       32.45        36.82        32.35         0.20        25.48        36.82 
TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7636 
       18.77        14.93        24.99        23.97        18.44        17.88 
TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8188 TCGA-FG-8191 TCGA-FG-A4MT 
       20.09        12.95        13.68        14.96        32.61        38.27 
TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60L 
       10.72        18.38        18.71        23.70        14.76        16.41 
TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A711 TCGA-FG-A87N TCGA-FG-A87Q 
       22.26        28.54        10.78        48.69        13.58         5.72 
TCGA-FN-7833 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 
       27.52        11.54        40.11         0.03        16.54         3.75 
TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7482 
       17.42         6.54        24.26         6.38        40.34       106.95 
TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 
      172.77         4.01         5.03        29.85        23.18       122.47 
TCGA-HT-7606 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7676 TCGA-HT-7680 
       17.29        45.99        56.09        57.60         0.16         0.76 
TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 
        6.05        42.74        31.69        14.96         0.10         0.10 
TCGA-HT-7693 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 
       17.52        39.48        19.23        50.63         0.49        23.61 
TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8011 
        3.68         5.33         3.72        11.28        31.43        16.24 
TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8106 
       63.55         0.10        37.87        33.01        12.23         0.10 
TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8114 TCGA-HT-8563 
        0.46         2.50        13.78         0.23        34.19        28.27 
TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5RA TCGA-HT-A5RB 
       15.72         0.23         0.13        20.22        27.35         0.10 
TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A61B 
        5.33         2.70         1.81        16.14        16.83        17.52 
TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74O TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7493 
        2.43        10.52         0.10         8.32        19.23        35.90 
TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM 
       21.70        21.60        19.59        12.76        20.81        20.71 
TCGA-IK-7675 TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EY TCGA-P5-A5EZ 
       19.00        14.40         0.23         6.71         2.37         2.30 
TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X 
        5.88         7.63         1.28         0.16        10.42        13.25 
TCGA-P5-A731 TCGA-P5-A733 TCGA-QH-A65S TCGA-QH-A6CS TCGA-QH-A6CV TCGA-QH-A6CW 
        9.01        13.61         2.53        19.33        14.53        13.61 
TCGA-QH-A6CX TCGA-QH-A6X3 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A870 
       12.23        10.29         1.91        16.50         5.03        12.99 
TCGA-RY-A83Z TCGA-RY-A843 TCGA-RY-A845 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV 
        9.90         2.07        19.59        62.17        87.12        18.77 
TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 
       28.70        22.95        17.62        16.08        98.24        95.93 
TCGA-S9-A6UA TCGA-S9-A6WG TCGA-S9-A6WM TCGA-S9-A6WO TCGA-S9-A6WQ TCGA-S9-A7IS 
        5.85        80.12        19.86        18.61        14.07         7.92 
TCGA-S9-A7IX TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7R2 
       22.32         7.13        20.02        15.06        13.12        10.39 
TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-TM-A7C3 
       99.06        30.05        98.63        31.59        18.71        49.45 
TCGA-TM-A7C4 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F 
       48.33        34.78        48.39        24.92        16.18        59.05 
TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84Q TCGA-TM-A84T 
       30.44        28.08        24.16        40.83        25.38        23.80 
TCGA-TQ-A7RH TCGA-TQ-A7RW TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CD TCGA-VM-A8CH 
       15.98        26.99        43.04        30.08         7.89        23.47 
TCGA-VV-A86M TCGA-VW-A8FI TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A 
       16.01         8.05        13.32        43.96        39.88        43.40 
TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       45.80        46.88        37.71        20.81 

  DEL PEAK  4(1P22.1) MUTATED DEL PEAK  4(1P22.1) WILD-TYPE 
                         0.07                          0.03 
  DEL PEAK  4(1P22.1) MUTATED DEL PEAK  4(1P22.1) WILD-TYPE 
                       182.33                        211.17 
  DEL PEAK  4(1P22.1) MUTATED DEL PEAK  4(1P22.1) WILD-TYPE 
                        17.65                         13.97 
[1] "0.1 - 182.3 (17.6)" "0.0 - 211.2 (14.0)"
[1] "hr=" "2.8"
D36V2, continuous
D36V3, binary
                               cls
clus                              0   1
  DEL PEAK  4(1P22.1) MUTATED    47 173
  DEL PEAK  4(1P22.1) WILD-TYPE 523 299
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  4(1P22.1) MUTATED     47  173
  DEL PEAK  4(1P22.1) WILD-TYPE  523  299
                        clus
vv                       DEL PEAK  4(1P22.1) MUTATED
  BRAIN                                           47
  CENTRAL NERVOUS SYSTEM                         173
                        clus
vv                       DEL PEAK  4(1P22.1) WILD-TYPE
  BRAIN                                            523
  CENTRAL NERVOUS SYSTEM                           299
[1] 2 2
[1] FALSE
D36V4, binary
                               cls
clus                              0   1
  DEL PEAK  4(1P22.1) MUTATED    95 125
  DEL PEAK  4(1P22.1) WILD-TYPE 335 487
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  4(1P22.1) MUTATED     95  125
  DEL PEAK  4(1P22.1) WILD-TYPE  335  487
        clus
vv       DEL PEAK  4(1P22.1) MUTATED DEL PEAK  4(1P22.1) WILD-TYPE
  FEMALE                          95                           335
  MALE                           125                           487
[1] 2 2
[1] FALSE
D36V5, continuous
                               vv
clus                            ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  DEL PEAK  4(1P22.1) MUTATED            10                             1
  DEL PEAK  4(1P22.1) WILD-TYPE         166                            26
                               vv
clus                            OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  DEL PEAK  4(1P22.1) MUTATED                 34               129
  DEL PEAK  4(1P22.1) WILD-TYPE               84                49
                               vv
clus                            TREATED PRIMARY GBM
  DEL PEAK  4(1P22.1) MUTATED                     4
  DEL PEAK  4(1P22.1) WILD-TYPE                  14
                               vv
clus                            UNTREATED PRIMARY (DE NOVO) GBM
  DEL PEAK  4(1P22.1) MUTATED                                42
  DEL PEAK  4(1P22.1) WILD-TYPE                             483
D36V6, multiclass
                                 clus
vv                                DEL PEAK  4(1P22.1) MUTATED
  ASTROCYTOMA                                              10
  GLIOBLASTOMA MULTIFORME (GBM)                             1
  OLIGOASTROCYTOMA                                         34
  OLIGODENDROGLIOMA                                       129
  TREATED PRIMARY GBM                                       4
  UNTREATED PRIMARY (DE NOVO) GBM                          42
                                 clus
vv                                DEL PEAK  4(1P22.1) WILD-TYPE
  ASTROCYTOMA                                               166
  GLIOBLASTOMA MULTIFORME (GBM)                              26
  OLIGOASTROCYTOMA                                           84
  OLIGODENDROGLIOMA                                          49
  TREATED PRIMARY GBM                                        14
  UNTREATED PRIMARY (DE NOVO) GBM                           483
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D36V7, binary
                               cls
clus                              0   1
  DEL PEAK  4(1P22.1) MUTATED    59 161
  DEL PEAK  4(1P22.1) WILD-TYPE 415 407
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  4(1P22.1) MUTATED     59  161
  DEL PEAK  4(1P22.1) WILD-TYPE  415  407
     clus
vv    DEL PEAK  4(1P22.1) MUTATED DEL PEAK  4(1P22.1) WILD-TYPE
  NO                           59                           415
  YES                         161                           407
[1] 2 2
[1] FALSE
                               vv
clus                            AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK  4(1P22.1) MUTATED                                  0     5
  DEL PEAK  4(1P22.1) WILD-TYPE                                1    16
                               vv
clus                            BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK  4(1P22.1) MUTATED                           8   198
  DEL PEAK  4(1P22.1) WILD-TYPE                        56   724
D36V8, multiclass
                                  clus
vv                                 DEL PEAK  4(1P22.1) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                           0
  ASIAN                                                      5
  BLACK OR AFRICAN AMERICAN                                  8
  WHITE                                                    198
                                  clus
vv                                 DEL PEAK  4(1P22.1) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                             1
  ASIAN                                                       16
  BLACK OR AFRICAN AMERICAN                                   56
  WHITE                                                      724
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D36V9, binary
                               cls
clus                              0   1
  DEL PEAK  4(1P22.1) MUTATED     7 194
  DEL PEAK  4(1P22.1) WILD-TYPE  23 697
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  4(1P22.1) MUTATED      7  194
  DEL PEAK  4(1P22.1) WILD-TYPE   23  697
                        clus
vv                       DEL PEAK  4(1P22.1) MUTATED
  HISPANIC OR LATINO                               7
  NOT HISPANIC OR LATINO                         194
                        clus
vv                       DEL PEAK  4(1P22.1) WILD-TYPE
  HISPANIC OR LATINO                                23
  NOT HISPANIC OR LATINO                           697
[1] 2 2
[1] FALSE

Clustering(37) Variable = DEL PEAK  5(1Q42.11) MUTATION ANALYSIS
D37V1, survival
                                sevent
clus2                              0   1
  DEL PEAK  5(1Q42.11) MUTATED    26  49
  DEL PEAK  5(1Q42.11) WILD-TYPE 454 510
  DEL PEAK  5(1Q42.11) MUTATED DEL PEAK  5(1Q42.11) WILD-TYPE 
                            75                            964 
  DEL PEAK  5(1Q42.11) MUTATED DEL PEAK  5(1Q42.11) WILD-TYPE 
                            49                            510 
$`DEL PEAK  5(1Q42.11) MUTATED`
TCGA-02-0084 TCGA-02-0099 TCGA-02-0106 TCGA-02-0281 TCGA-02-0333 TCGA-02-0446 
       12.62         3.48        11.67         3.98         4.37         9.27 
TCGA-02-2466 TCGA-06-0126 TCGA-06-0190 TCGA-06-0238 TCGA-06-0402 TCGA-06-1084 
       16.80         6.94        10.42        13.32         0.26        23.93 
TCGA-06-1802 TCGA-06-1806 TCGA-06-2558 TCGA-06-5411 TCGA-06-6390 TCGA-08-0246 
       15.32        15.32        12.49         8.35         5.39         4.18 
TCGA-08-0392 TCGA-08-0510 TCGA-12-0620 TCGA-12-0656 TCGA-12-0776 TCGA-12-1599 
        0.72         4.27        10.45        94.78         9.73        25.68 
TCGA-14-0740 TCGA-14-0790 TCGA-14-0812 TCGA-14-0817 TCGA-14-1034 TCGA-14-1395 
       11.97        13.78         3.25         5.39        15.95         1.38 
TCGA-14-1450 TCGA-19-0957 TCGA-19-0962 TCGA-19-1387 TCGA-19-1388 TCGA-19-1390 
       58.78        21.90         0.66         5.95        12.95        25.38 
TCGA-19-2619 TCGA-19-2629 TCGA-19-A6J5 TCGA-26-5133 TCGA-27-2524 TCGA-28-2502 
        9.67        24.23        28.54        14.86         7.59         0.66 
TCGA-32-1977 TCGA-32-1986 TCGA-32-1987 TCGA-74-6575 TCGA-74-6577 TCGA-76-6193 
        0.10        12.69        14.86        20.91         4.34         2.70 
TCGA-RR-A6KA TCGA-CS-5395 TCGA-DU-6396 TCGA-DU-8158 TCGA-DU-A5TS TCGA-DU-A76K 
        6.28        21.01        75.16         5.10        15.12        11.41 
TCGA-DU-A7TA TCGA-DU-A7TG TCGA-E1-5302 TCGA-E1-5304 TCGA-E1-5322 TCGA-E1-A7YV 
       77.88        44.42        50.14        41.13       130.78        32.45 
TCGA-FG-8185 TCGA-FG-A6J3 TCGA-HT-7477 TCGA-HT-7485 TCGA-HT-7857 TCGA-HT-8104 
       14.24        22.26        24.26         4.01         0.23        12.23 
TCGA-HT-8113 TCGA-HT-A5RA TCGA-HT-A619 TCGA-P5-A5F4 TCGA-P5-A72U TCGA-QH-A65S 
       29.59        27.35        21.40         0.76         0.16         2.53 
TCGA-S9-A6WI TCGA-S9-A89Z TCGA-TM-A84T 
       84.99        11.97        23.80 

$`DEL PEAK  5(1Q42.11) WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
       11.77         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 
       20.71        82.59        20.61        87.06        77.65        20.12 
TCGA-02-0024 TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 
       53.10        42.74        24.59        12.16        90.58         2.83 
TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 
       14.14         3.62        10.72        10.52        18.31         6.87 
TCGA-02-0047 TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 
       14.73         3.22        15.09        12.59         6.54         2.50 
TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 
       19.86         8.35         9.57         6.02        19.73        26.43 
TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 
       28.70        25.05         5.49        10.19        20.84        27.25 
TCGA-02-0080 TCGA-02-0083 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 
       89.72        22.72        51.32         8.81        57.76        16.96 
TCGA-02-0102 TCGA-02-0104 TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 TCGA-02-0114 
       27.02        65.00        17.65        23.18        92.65        99.98 
TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 
       15.65        48.95        16.54        16.93        17.72        10.75 
TCGA-02-0271 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 
       14.47        13.87        14.20        15.95        12.23         9.90 
TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0337 
        7.73        10.62         7.33        15.91        25.71        25.12 
TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 
       10.59        12.39        14.50        10.55        47.11        11.34 
TCGA-02-0451 TCGA-02-0456 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 
       16.21         3.35        12.92        15.32        15.45        20.32 
TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0127 TCGA-06-0128 
        2.70         6.15        20.38        47.61         3.98        22.72 
TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 
       33.67        12.95        25.35        14.30        26.70        24.23 
TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 
       11.90         0.20        10.29         2.20        11.74         2.33 
TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 
       20.09        17.79        10.09         8.61        19.46        46.59 
TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 
       12.33        13.94        10.45         3.19        10.82         9.44 
TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 
       11.80         3.42        56.91        10.65         5.85        19.66 
TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 
        3.29        13.12         4.47         3.22         4.04        91.00 
TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 
        4.18        88.14        20.25         3.65        69.90        73.84 
TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 
       27.22        44.58        15.42        38.96         4.67         7.40 
TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 
        5.56         0.39         7.66         8.42         7.63         7.40 
TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 
       11.84         0.53        15.02        24.16         0.72        19.82 
TCGA-06-0237 TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0409 
       13.64        20.42        48.69        10.82         9.01        72.36 
TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 
        4.70         9.57         3.16        35.11        12.62         5.75 
TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 
        5.75         9.80         2.10        23.57        14.20        26.40 
TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 
       46.88         7.86         2.70         2.70         0.92        43.46 
TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 
       46.19         5.65         7.17        40.41        16.57        20.78 
TCGA-06-0939 TCGA-06-1086 TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 TCGA-06-1804 
       26.76         6.84         4.04        26.79        11.84        13.61 
TCGA-06-1805 TCGA-06-2557 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 
       33.90         1.08         4.93        17.65        12.56        30.64 
TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 
        5.95        16.64         5.98         4.37         0.43        31.50 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 
       11.74         3.55         4.54         8.81         8.98         8.55 
TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 
        6.71         2.73         3.75         6.15         4.57         5.23 
TCGA-06-6389 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 
        7.79         1.48       120.56         7.36         8.32        12.85 
TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-06-A5U0 TCGA-06-A5U1 
        4.77         1.55         4.77         4.96         4.70         1.87 
TCGA-06-A6S0 TCGA-06-A6S1 TCGA-06-A7TK TCGA-06-A7TL TCGA-08-0244 TCGA-08-0245 
        3.12         2.56         5.39         5.42        22.68        37.84 
TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 
      115.86         1.74         8.42        25.71        12.16         9.80 
TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 
       29.23        65.33         1.28         8.42        17.95        24.56 
TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 
       31.10        37.58        22.29         3.39        12.23        14.93 
TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 TCGA-08-0509 TCGA-08-0512 TCGA-08-0514 
       18.02        15.35        13.97        12.56        42.15        11.08 
TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 
       19.59        58.68        19.33        10.75         4.80         7.27 
TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 
       15.98        18.41         7.56        15.35        14.73        12.99 
TCGA-12-0619 TCGA-12-0654 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 
       34.92         7.59         0.10        38.17        25.97        26.66 
TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 
       12.13         3.65        20.38        28.41        15.06        53.85 
TCGA-12-0773 TCGA-12-0775 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 
       43.23         7.63        14.93        14.86        91.76        24.79 
TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 
       18.48        10.62        23.51        27.78        38.76         8.94 
TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 
       20.58       127.59         5.82         7.59        33.21        21.73 
TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 
       15.98        12.23        15.85         9.11        14.53         3.98 
TCGA-12-1099 TCGA-12-1598 TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 
        4.14        15.65        14.73         6.77        59.77        44.02 
TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 
       26.93        15.22        10.95        12.69        34.92        14.53 
TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0781 TCGA-14-0783 
       14.93         3.22         2.04        15.12         0.95         6.21 
TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0813 TCGA-14-0862 TCGA-14-0865 
       23.05         2.24        11.24         1.35         2.89        16.50 
TCGA-14-0866 TCGA-14-0867 TCGA-14-0871 TCGA-14-1037 TCGA-14-1043 TCGA-14-1396 
       26.33         2.04        28.93        19.30         0.79         1.12 
TCGA-14-1401 TCGA-14-1402 TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 
        3.75        32.05        23.11         7.10         1.15        30.18 
TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 
        0.92        40.96         6.67        12.43         0.99         1.97 
TCGA-14-1821 TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 
       17.79        17.85         7.63         5.88         7.17        17.49 
TCGA-14-2555 TCGA-14-3477 TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 
        7.96         3.78         3.42        13.78        50.53        19.10 
TCGA-15-1447 TCGA-15-1449 TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 
       53.19        13.28         3.91        17.59        26.07        16.37 
TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 
        4.31        29.03         4.57        10.29        14.01         9.14 
TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 TCGA-19-0960 TCGA-19-0963 
       21.24        13.97         6.41        11.77         8.61        14.27 
TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 TCGA-19-1389 TCGA-19-1392 TCGA-19-1786 
        3.39        10.75         9.07         4.64         3.65         7.17 
TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 
       12.66         3.25         0.13         4.87         1.08         7.53 
TCGA-19-2624 TCGA-19-2625 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 
        0.16         4.08         7.00         7.04         6.64        17.19 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 
        8.02        18.90         4.73        12.10         1.78        22.49 
TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-19-A60I TCGA-19-A6J4 TCGA-26-1438 
       14.07        16.80        14.96        17.79         3.98        10.03 
TCGA-26-1439 TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 
       13.87         9.73        31.33         7.13         9.37         9.40 
TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 
        5.49         8.88        18.97         1.58         7.92         2.33 
TCGA-26-A7UX TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 
       19.33         5.06        16.60         9.86        24.23        40.54 
TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 
       21.30        30.05        14.04        11.51        24.76        10.39 
TCGA-27-2521 TCGA-27-2523 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 
       10.39        16.08         2.86        14.40        15.78         0.20 
TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 
        2.53         9.21         8.35         7.63         8.48         1.22 
TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2506 TCGA-28-2509 TCGA-28-2513 
        1.55         2.83         0.13         6.74         4.77         7.30 
TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 
        5.26        14.93        11.28        17.88        14.53        11.77 
TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 
       31.27        23.44        11.01        13.64         5.16        22.68 
TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 TCGA-32-1978 
       12.76         5.42        15.39        21.07         0.49        15.85 
TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 
       19.50         1.18         4.67        16.93        12.23        20.78 
TCGA-32-2495 TCGA-32-2615 TCGA-32-2616 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 
       15.02        15.95         7.36         8.84        22.78        25.18 
TCGA-32-4208 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 
       21.14         3.72        12.59        19.86        10.85        19.23 
TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 
        0.85        13.35         8.94         9.53         0.99         4.44 
TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-4W-AA9S TCGA-4W-AA9T 
       11.84         0.20        15.12        12.46         4.14        14.76 
TCGA-74-6573 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 
        3.45        14.33         8.22         7.50         4.80         4.54 
TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 
        3.09         3.65         9.17         2.53        10.78        16.70 
TCGA-76-6192 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 
        3.29        11.38        17.06         8.35        20.98         4.83 
TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 
        5.03         0.23         9.27         7.73         7.79         1.61 
TCGA-81-5911 TCGA-87-5896 TCGA-OX-A56R TCGA-RR-A6KC TCGA-CS-4938 TCGA-CS-4941 
       17.72        26.30         5.92        20.55         4.70         7.69 
TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 
       43.89        18.15        10.62        64.64        40.18         0.10 
TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 
        9.96         6.38        17.69        23.84        17.95        12.43 
TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 
        8.48         7.56         8.02         7.40         6.61       122.73 
TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 
       81.96        75.25        47.93        72.92        50.86        50.17 
TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB 
       44.52        36.56        78.28        46.42        18.84        30.21 
TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH 
       46.72        39.78        37.45        33.57        72.95        31.63 
TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S 
       24.20        25.48        30.12         5.98        31.40        27.45 
TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L 
       27.81        29.23        14.40        18.51        12.10        11.24 
TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 
       17.88        30.74        16.18        19.96        31.82        30.31 
TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F 
       14.40         8.02        30.21        42.05        27.81        17.19 
TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV 
       17.19        54.25        13.12        13.38         3.45        18.61 
TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 
       18.02        14.56        17.46         6.74        13.38         8.45 
TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 
        6.81       182.33        18.94        17.49        15.16       211.17 
TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 
       52.11        22.42        49.02        46.06        65.75         1.22 
TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 
       87.45         7.04        11.64       133.74        19.89        16.83 
TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 
       94.52       114.08         7.96         7.73        11.47        62.96 
TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 
      156.23       138.28        14.99       105.21         6.54         8.84 
TCGA-DU-7014 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 
      117.40        90.77        30.67        26.30        10.36         7.96 
TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 
       94.32        18.94        44.02        62.01        25.91        60.30 
TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 
       23.31        41.98         2.76        23.74        14.60        20.68 
TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP 
       21.40        19.13        16.96        15.48        14.17        14.24 
TCGA-DU-A5TR TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 
       12.59         4.96         3.65         5.65        12.20         8.65 
TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76L TCGA-DU-A76O 
        2.70        77.98         7.23         5.98        26.76         7.13 
TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD 
       21.30        17.98       124.50        42.31        23.51         7.50 
TCGA-DU-A7TJ TCGA-E1-5303 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 
        0.56        67.46        79.99        57.93       134.27        78.21 
TCGA-E1-5319 TCGA-E1-A7YO TCGA-E1-A7YW TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 
       95.57        75.02        36.82        32.35        14.33         0.23 
TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 
        0.20        47.77        25.48        34.36        36.82        18.77 
TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 
       14.93        24.99        23.97        18.44        15.35        17.88 
TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8186 
       22.55        20.61        20.09        12.95        13.68        16.01 
TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU 
       20.09        14.96        22.52        32.61        38.27        10.72 
TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L 
       18.38        18.71        23.70        14.76        17.82        16.41 
TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 
       15.02        16.44        28.54        10.78        36.66        48.69 
TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 
       20.45        13.58         5.72        27.52         0.10         6.67 
TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 
       11.54        40.11         0.13         0.03        16.54         3.75 
TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 
       17.42         6.54         6.38        40.34        75.19        95.93 
TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 
      106.95       172.77         5.03        29.85        23.18       122.47 
TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 
        4.57        17.29         3.16        22.06        45.99        56.09 
TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 
       57.60         0.23        14.27         0.16        16.24         0.76 
TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 
       44.68         6.05        42.74         0.10        31.69        14.96 
TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 
        0.10         0.10         2.96        17.52         6.90        14.53 
TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 
       39.48        19.23        39.09        50.63         0.49        23.61 
TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 
       37.15         0.33         0.13         3.68         5.33        35.47 
TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 
        3.72        11.28        31.43         1.64        16.24         9.40 
TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8105 TCGA-HT-8106 
       63.55         0.10        37.87        33.01         6.25         0.10 
TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8114 
        0.46         2.50         5.56        13.78         0.23        34.19 
TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 
       28.27        15.72         0.23        26.04         0.13        20.22 
TCGA-HT-A5R9 TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 
        0.07         0.10         5.33         2.70        16.93         1.81 
TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J 
       16.14        16.83        17.52        17.65         2.43        10.52 
TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 
       15.35        11.05         0.10        29.92        19.89         8.32 
TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7493 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 
       19.23        40.18        35.90         4.31        21.70        21.60 
TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM 
       19.59        17.82        20.35        12.76        20.81        20.71 
TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW 
       19.00        42.77        14.40        14.40         0.23         6.71 
TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 
        1.64         2.37         2.30         4.11         5.88         7.63 
TCGA-P5-A5F6 TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 
        1.28        10.42        13.25        11.64         0.20         9.01 
TCGA-P5-A733 TCGA-QH-A65R TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS 
       13.61        15.16        12.62        15.85        14.04        19.33 
TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ 
       14.83        14.53        13.61        12.23         2.20         9.17 
TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA 
       10.29        14.53        16.34        16.73         1.91        16.50 
TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO 
        5.03        11.08        12.99        88.83        94.03        32.65 
TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 
       59.38        30.87         5.46         9.90        28.08         2.07 
TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW 
       19.59        30.67        62.17        87.12        18.77        37.84 
TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 
       34.49        31.33        28.70        22.95        17.62        23.64 
TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB 
       32.61        16.08        98.24        95.93         5.85       106.39 
TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WL TCGA-S9-A6WM 
       69.50        72.59        80.12        32.45        31.10        19.86 
TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS 
       15.91        18.61        15.16        14.07        36.13         7.92 
TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 
       22.32        23.51         7.13        20.02         8.19         2.04 
TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 
       17.03        15.06        13.12        28.37        13.02       169.84 
TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V 
       10.39        99.06        30.05        98.63        31.59        18.71 
TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B 
       49.45        48.33        49.32        34.78        48.39        24.92 
TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J 
       16.18        59.05        40.64        30.44        28.08        24.16 
TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S 
       40.83        24.79        33.24        25.38        18.61        14.93 
TCGA-TQ-A7RH TCGA-TQ-A7RW TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB 
       15.98        26.99        43.04        30.08        13.51         0.10 
TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS 
        7.89        35.93        23.47        37.05        16.01        23.21 
TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A 
        8.05        51.06        13.32        43.96        39.88        43.40 
TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       45.80        46.88        37.71        20.81 

  DEL PEAK  5(1Q42.11) MUTATED DEL PEAK  5(1Q42.11) WILD-TYPE 
                          0.10                           0.03 
  DEL PEAK  5(1Q42.11) MUTATED DEL PEAK  5(1Q42.11) WILD-TYPE 
                        130.78                         211.17 
  DEL PEAK  5(1Q42.11) MUTATED DEL PEAK  5(1Q42.11) WILD-TYPE 
                         12.49                          14.93 
[1] "0.1 - 130.8 (12.5)" "0.0 - 211.2 (14.9)"
[1] "hr=" "1.4"
D37V2, continuous
D37V3, binary
                                cls
clus                               0   1
  DEL PEAK  5(1Q42.11) MUTATED    49  26
  DEL PEAK  5(1Q42.11) WILD-TYPE 521 446
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  5(1Q42.11) MUTATED     49   26
  DEL PEAK  5(1Q42.11) WILD-TYPE  521  446
                        clus
vv                       DEL PEAK  5(1Q42.11) MUTATED
  BRAIN                                            49
  CENTRAL NERVOUS SYSTEM                           26
                        clus
vv                       DEL PEAK  5(1Q42.11) WILD-TYPE
  BRAIN                                             521
  CENTRAL NERVOUS SYSTEM                            446
[1] 2 2
[1] FALSE
D37V4, binary
                                cls
clus                               0   1
  DEL PEAK  5(1Q42.11) MUTATED    33  42
  DEL PEAK  5(1Q42.11) WILD-TYPE 397 570
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  5(1Q42.11) MUTATED     33   42
  DEL PEAK  5(1Q42.11) WILD-TYPE  397  570
        clus
vv       DEL PEAK  5(1Q42.11) MUTATED DEL PEAK  5(1Q42.11) WILD-TYPE
  FEMALE                           33                            397
  MALE                             42                            570
[1] 2 2
[1] FALSE
D37V5, continuous
                                vv
clus                             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  DEL PEAK  5(1Q42.11) MUTATED            11                             3
  DEL PEAK  5(1Q42.11) WILD-TYPE         165                            24
                                vv
clus                             OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  DEL PEAK  5(1Q42.11) MUTATED                  6                 9
  DEL PEAK  5(1Q42.11) WILD-TYPE              112               169
                                vv
clus                             TREATED PRIMARY GBM
  DEL PEAK  5(1Q42.11) MUTATED                     1
  DEL PEAK  5(1Q42.11) WILD-TYPE                  17
                                vv
clus                             UNTREATED PRIMARY (DE NOVO) GBM
  DEL PEAK  5(1Q42.11) MUTATED                                45
  DEL PEAK  5(1Q42.11) WILD-TYPE                             480
D37V6, multiclass
                                 clus
vv                                DEL PEAK  5(1Q42.11) MUTATED
  ASTROCYTOMA                                               11
  GLIOBLASTOMA MULTIFORME (GBM)                              3
  OLIGOASTROCYTOMA                                           6
  OLIGODENDROGLIOMA                                          9
  TREATED PRIMARY GBM                                        1
  UNTREATED PRIMARY (DE NOVO) GBM                           45
                                 clus
vv                                DEL PEAK  5(1Q42.11) WILD-TYPE
  ASTROCYTOMA                                                165
  GLIOBLASTOMA MULTIFORME (GBM)                               24
  OLIGOASTROCYTOMA                                           112
  OLIGODENDROGLIOMA                                          169
  TREATED PRIMARY GBM                                         17
  UNTREATED PRIMARY (DE NOVO) GBM                            480
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D37V7, binary
                                cls
clus                               0   1
  DEL PEAK  5(1Q42.11) MUTATED    34  41
  DEL PEAK  5(1Q42.11) WILD-TYPE 440 527
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  5(1Q42.11) MUTATED     34   41
  DEL PEAK  5(1Q42.11) WILD-TYPE  440  527
     clus
vv    DEL PEAK  5(1Q42.11) MUTATED DEL PEAK  5(1Q42.11) WILD-TYPE
  NO                            34                            440
  YES                           41                            527
[1] 2 2
[1] FALSE
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK  5(1Q42.11) MUTATED                                  0     1
  DEL PEAK  5(1Q42.11) WILD-TYPE                                1    20
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK  5(1Q42.11) MUTATED                           9    61
  DEL PEAK  5(1Q42.11) WILD-TYPE                        55   861
D37V8, multiclass
                                  clus
vv                                 DEL PEAK  5(1Q42.11) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            0
  ASIAN                                                       1
  BLACK OR AFRICAN AMERICAN                                   9
  WHITE                                                      61
                                  clus
vv                                 DEL PEAK  5(1Q42.11) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              1
  ASIAN                                                        20
  BLACK OR AFRICAN AMERICAN                                    55
  WHITE                                                       861
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D37V9, binary
                                cls
clus                               0   1
  DEL PEAK  5(1Q42.11) MUTATED     2  62
  DEL PEAK  5(1Q42.11) WILD-TYPE  28 829
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  5(1Q42.11) MUTATED      2   62
  DEL PEAK  5(1Q42.11) WILD-TYPE   28  829
                        clus
vv                       DEL PEAK  5(1Q42.11) MUTATED
  HISPANIC OR LATINO                                2
  NOT HISPANIC OR LATINO                           62
                        clus
vv                       DEL PEAK  5(1Q42.11) WILD-TYPE
  HISPANIC OR LATINO                                 28
  NOT HISPANIC OR LATINO                            829
[1] 2 2
[1] FALSE

Clustering(38) Variable = DEL PEAK  6(1Q44) MUTATION ANALYSIS
D38V1, survival
                             sevent
clus2                           0   1
  DEL PEAK  6(1Q44) MUTATED    31  35
  DEL PEAK  6(1Q44) WILD-TYPE 449 524
  DEL PEAK  6(1Q44) MUTATED DEL PEAK  6(1Q44) WILD-TYPE 
                         66                         973 
  DEL PEAK  6(1Q44) MUTATED DEL PEAK  6(1Q44) WILD-TYPE 
                         35                         524 
$`DEL PEAK  6(1Q44) MUTATED`
TCGA-02-0026 TCGA-02-0084 TCGA-02-2466 TCGA-02-2485 TCGA-06-0149 TCGA-06-1806 
       24.59        12.62        16.80        15.45         8.61        15.32 
TCGA-06-2558 TCGA-06-5411 TCGA-08-0354 TCGA-08-0392 TCGA-08-0510 TCGA-12-0776 
       12.49         8.35        17.95         0.72         4.27         9.73 
TCGA-12-0780 TCGA-12-3648 TCGA-12-5301 TCGA-14-0740 TCGA-14-0812 TCGA-14-1034 
       14.86        26.93         2.04        11.97         3.25        15.95 
TCGA-14-1456 TCGA-14-1821 TCGA-19-1387 TCGA-19-1388 TCGA-19-1390 TCGA-19-2619 
       40.96        17.79         5.95        12.95        25.38         9.67 
TCGA-19-A6J5 TCGA-26-5133 TCGA-26-5134 TCGA-27-2523 TCGA-28-5214 TCGA-32-1986 
       28.54        14.86         5.49        16.08        23.44        12.69 
TCGA-32-2638 TCGA-74-6575 TCGA-74-6577 TCGA-76-6193 TCGA-CS-4943 TCGA-DU-5871 
       25.18        20.91         4.34         2.70        18.15        18.94 
TCGA-DU-6396 TCGA-DU-6542 TCGA-DU-7015 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-A5TS 
       75.16         7.73        90.77         5.10        23.74        15.12 
TCGA-DU-A7TA TCGA-DU-A7TG TCGA-E1-5302 TCGA-E1-5322 TCGA-E1-A7YV TCGA-FG-7636 
       77.88        44.42        50.14       130.78        32.45        17.88 
TCGA-FG-8185 TCGA-FG-A6J3 TCGA-HT-7477 TCGA-HT-7485 TCGA-HT-7857 TCGA-HT-8113 
       14.24        22.26        24.26         4.01         0.23        29.59 
TCGA-HT-A619 TCGA-HW-A5KL TCGA-P5-A5F4 TCGA-QH-A65S TCGA-QH-A6CW TCGA-S9-A6TS 
       21.40        20.81         0.76         2.53        13.61        62.17 
TCGA-S9-A6U9 TCGA-S9-A6WI TCGA-S9-A7R1 TCGA-TM-A84I TCGA-TM-A84T TCGA-TQ-A7RW 
       95.93        84.99       169.84        28.08        23.80        26.99 

$`DEL PEAK  6(1Q44) WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
       11.77         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 
       20.71        82.59        20.61        87.06        77.65        20.12 
TCGA-02-0024 TCGA-02-0025 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 
       53.10        42.74        12.16        90.58         2.83        14.14 
TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 
        3.62        10.72        10.52        18.31         6.87        14.73 
TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 
        3.22        15.09        12.59         6.54         2.50        19.86 
TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 
        8.35         9.57         6.02        19.73        26.43        28.70 
TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 
       25.05         5.49        10.19        20.84        27.25        89.72 
TCGA-02-0083 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 
       22.72        51.32         8.81        57.76        16.96         3.48 
TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 
       27.02        65.00        11.67        17.65        23.18        92.65 
TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 
       99.98        15.65        48.95        16.54        16.93        17.72 
TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 
       10.75        14.47         3.98        13.87        14.20        15.95 
TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 
       12.23         9.90         7.73        10.62         7.33        15.91 
TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 
       25.71         4.37        25.12        10.59        12.39        14.50 
TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 
       10.55        47.11        11.34         9.27        16.21         3.35 
TCGA-02-2470 TCGA-02-2483 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 
       12.92        15.32        20.32         2.70         6.15        20.38 
TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 
       47.61         6.94         3.98        22.72        33.67        12.95 
TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 
       25.35        14.30        26.70        24.23        11.90         0.20 
TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 
       10.29         2.20        11.74         2.33        20.09        17.79 
TCGA-06-0148 TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 
       10.09        19.46        46.59        12.33        13.94        10.45 
TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 
        3.19        10.82         9.44        11.80         3.42        56.91 
TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 
       10.65         5.85        19.66         3.29        13.12         4.47 
TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 
        3.22         4.04        91.00         4.18        88.14        20.25 
TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 
        3.65        69.90        73.84        27.22        44.58        15.42 
TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 
       10.42        38.96         4.67         7.40         5.56         0.39 
TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 
        7.66         8.42         7.63         7.40        11.84         0.53 
TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 
       15.02        24.16         0.72        19.82        13.64        13.32 
TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 
       20.42        48.69        10.82         9.01         0.26        72.36 
TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 
        4.70         9.57         3.16        35.11        12.62         5.75 
TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 
        5.75         9.80         2.10        23.57        14.20        26.40 
TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 
       46.88         7.86         2.70         2.70         0.92        43.46 
TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 
       46.19         5.65         7.17        40.41        16.57        20.78 
TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 
       26.76        23.93         6.84         4.04        26.79        11.84 
TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 TCGA-06-2559 TCGA-06-2561 
       15.32        13.61        33.90         1.08         4.93        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 
       12.56        30.64         5.95        16.64         5.98         4.37 
TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5412 TCGA-06-5413 
        0.43        31.50        11.74         3.55         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         6.71         2.73         3.75         6.15 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.57         5.23         7.79         5.39         1.48       120.56 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.32        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-06-A5U0 TCGA-06-A5U1 TCGA-06-A6S0 TCGA-06-A6S1 TCGA-06-A7TK 
        4.96         4.70         1.87         3.12         2.56         5.39 
TCGA-06-A7TL TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 
        5.42        22.68        37.84         4.18       115.86         1.74 
TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 
        8.42        25.71        12.16         9.80        29.23        65.33 
TCGA-08-0352 TCGA-08-0353 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 
        1.28         8.42        24.56        31.10        37.58        22.29 
TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 
        3.39        12.23        14.93        18.02        15.35        13.97 
TCGA-08-0509 TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 
       12.56        42.15        11.08        19.59        58.68        19.33 
TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 
       10.75         4.80         7.27        15.98        18.41         7.56 
TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0654 
       15.35        14.73        12.99        34.92        10.45         7.59 
TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 
       94.78         0.10        38.17        25.97        26.66        12.13 
TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 
        3.65        20.38        28.41        15.06        53.85        43.23 
TCGA-12-0775 TCGA-12-0778 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 
        7.63        14.93        91.76        24.79        18.48        10.62 
TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 
       23.51        27.78        38.76         8.94        20.58       127.59 
TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 
        5.82         7.59        33.21        21.73        15.98        12.23 
TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 TCGA-12-1598 
       15.85         9.11        14.53         3.98         4.14        15.65 
TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 TCGA-12-3649 
       25.68        14.73         6.77        59.77        44.02        15.22 
TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 
       10.95        12.69        34.92        14.53        14.93         3.22 
TCGA-14-0736 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 
       15.12         0.95         6.21        23.05         2.24        11.24 
TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 
       13.78         1.35         5.39         2.89        16.50        26.33 
TCGA-14-0867 TCGA-14-0871 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 
        2.04        28.93        19.30         0.79         1.38         1.12 
TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 
        3.75        32.05        58.78        23.11         7.10         1.15 
TCGA-14-1454 TCGA-14-1455 TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 
       30.18         0.92         6.67        12.43         0.99         1.97 
TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 
       17.85         7.63         5.88         7.17        17.49         7.96 
TCGA-14-3477 TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 TCGA-15-1447 
        3.78         3.42        13.78        50.53        19.10        53.19 
TCGA-15-1449 TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 
       13.28         3.91        17.59        26.07        16.37         4.31 
TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 
       29.03         4.57        10.29        14.01         9.14        21.24 
TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 
       13.97         6.41        11.77        21.90         8.61         0.66 
TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 TCGA-19-1389 TCGA-19-1392 
       14.27         3.39        10.75         9.07         4.64         3.65 
TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2620 TCGA-19-2621 
        7.17        12.66         3.25         0.13         4.87         1.08 
TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 
        7.53         0.16         4.08        24.23         7.00         7.04 
TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 
        6.64        17.19         8.02        18.90         4.73        12.10 
TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-19-A60I 
        1.78        22.49        14.07        16.80        14.96        17.79 
TCGA-19-A6J4 TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 
        3.98        10.03        13.87         9.73        31.33         7.13 
TCGA-26-1799 TCGA-26-5132 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 
        9.37         9.40         8.88        18.97         1.58         7.92 
TCGA-26-6174 TCGA-26-A7UX TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 
        2.33        19.33         5.06        16.60         9.86        24.23 
TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 
       40.54        21.30        30.05        14.04        11.51        24.76 
TCGA-27-2519 TCGA-27-2521 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 
       10.39        10.39         7.59         2.86        14.40        15.78 
TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 
        0.20         2.53         9.21         8.35         7.63         8.48 
TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 
        1.22         1.55         2.83         0.13         0.66         6.74 
TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 
        4.77         7.30         5.26        14.93        11.28        17.88 
TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 
       14.53        11.77        31.27        11.01        13.64         5.16 
TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 
       22.68        12.76         5.42        15.39        21.07         0.49 
TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1987 
        0.10        15.85        19.50         1.18         4.67        14.86 
TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2616 
       16.93        12.23        20.78        15.02        15.95         7.36 
TCGA-32-2632 TCGA-32-2634 TCGA-32-4208 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 
        8.84        22.78        21.14         3.72        12.59        19.86 
TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 
       10.85        19.23         0.85        13.35         8.94         9.53 
TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 
        0.99         4.44        11.84         0.20        15.12        12.46 
TCGA-4W-AA9S TCGA-4W-AA9T TCGA-74-6573 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 
        4.14        14.76         3.45        14.33         8.22         7.50 
TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 
        4.80         4.54         3.09         3.65         9.17         2.53 
TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 
       10.78        16.70         3.29        11.38        17.06         8.35 
TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 
       20.98         4.83         5.03         0.23         9.27         7.73 
TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 TCGA-OX-A56R TCGA-RR-A6KA 
        7.79         1.61        17.72        26.30         5.92         6.28 
TCGA-RR-A6KC TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4944 TCGA-CS-5390 
       20.55         4.70         7.69        43.89        10.62        64.64 
TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 
       40.18         0.10        21.01         9.96         6.38        17.69 
TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 
       23.84        17.95        12.43         8.48         7.56         8.02 
TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 
        7.40         6.61       122.73        81.96        75.25        47.93 
TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 
       72.92        50.86        50.17        44.52        36.56        78.28 
TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE 
       46.42        18.84        30.21        46.72        39.78        37.45 
TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P 
       33.57        72.95        31.63        24.20        25.48        30.12 
TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W 
        5.98        31.40        27.45        27.81        29.23        14.40 
TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P 
       18.51        12.10        11.24        17.88        30.74        16.18 
TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 
       19.96        31.82        30.31        14.40         8.02        30.21 
TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US 
       42.05        27.81        17.19        17.19        54.25        13.12 
TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 
       13.38         3.45        18.61        18.02        14.56        17.46 
TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5872 
        6.74        13.38         8.45         6.81       182.33        17.49 
TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6397 
       15.16       211.17        52.11        22.42        49.02        46.06 
TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 
       65.75         1.22        87.45         7.04        11.64       133.74 
TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-7006 
       19.89        16.83        94.52       114.08         7.96        11.47 
TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 
       62.96       156.23       138.28        14.99       105.21         6.54 
TCGA-DU-7013 TCGA-DU-7014 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 
        8.84       117.40        30.67        26.30        10.36         7.96 
TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 
       94.32        18.94        44.02        62.01        25.91        60.30 
TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 
       23.31        41.98         2.76        14.60        20.68        21.40 
TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR 
       19.13        16.96        15.48        14.17        14.24        12.59 
TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 
        4.96         3.65         5.65        12.20         8.65         2.70 
TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O 
       77.98         7.23         5.98        11.41        26.76         7.13 
TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD 
       21.30        17.98       124.50        42.31        23.51         7.50 
TCGA-DU-A7TJ TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 
        0.56        67.46        41.13        79.99        57.93       134.27 
TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-A7YO TCGA-E1-A7YW TCGA-E1-A7Z6 TCGA-EZ-7264 
       78.21        95.57        75.02        36.82        32.35        14.33 
TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 
        0.23         0.20        47.77        25.48        34.36        36.82 
TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 
       18.77        14.93        24.99        23.97        18.44        15.35 
TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8186 
       22.55        20.61        20.09        12.95        13.68        16.01 
TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU 
       20.09        14.96        22.52        32.61        38.27        10.72 
TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L 
       18.38        18.71        23.70        14.76        17.82        16.41 
TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 
       15.02        16.44        28.54        10.78        36.66        48.69 
TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 
       20.45        13.58         5.72        27.52         0.10         6.67 
TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 
       11.54        40.11         0.13         0.03        16.54         3.75 
TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 
       17.42         6.54         6.38        40.34        75.19        95.93 
TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 
      106.95       172.77         5.03        29.85        23.18       122.47 
TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 
        4.57        17.29         3.16        22.06        45.99        56.09 
TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 
       57.60         0.23        14.27         0.16        16.24         0.76 
TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 
       44.68         6.05        42.74         0.10        31.69        14.96 
TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 
        0.10         0.10         2.96        17.52         6.90        14.53 
TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 
       39.48        19.23        39.09        50.63         0.49        23.61 
TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 
       37.15         0.33         0.13         3.68         5.33        35.47 
TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 
        3.72        11.28        31.43         1.64        16.24         9.40 
TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 
       63.55         0.10        37.87        33.01        12.23         6.25 
TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 
        0.10         0.46         2.50         5.56        13.78         0.23 
TCGA-HT-8114 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 
       34.19        28.27        15.72         0.23        26.04         0.13 
TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 
       20.22         0.07        27.35         0.10         5.33         2.70 
TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A61B TCGA-HT-A61C 
       16.93         1.81        16.14        16.83        17.52        17.65 
TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 
        2.43        10.52        15.35        11.05         0.10        29.92 
TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7493 TCGA-HW-7495 
       19.89         8.32        19.23        40.18        35.90         4.31 
TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK 
       21.70        21.60        19.59        17.82        20.35        12.76 
TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV 
       20.71        19.00        42.77        14.40        14.40         0.23 
TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 
        6.71         1.64         2.37         2.30         4.11         5.88 
TCGA-P5-A5F2 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z 
        7.63         1.28         0.16        10.42        13.25        11.64 
TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-QH-A65R TCGA-QH-A65V TCGA-QH-A65X 
        0.20         9.01        13.61        15.16        12.62        15.85 
TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CX TCGA-QH-A6CY 
       14.04        19.33        14.83        14.53        12.23         2.20 
TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 
        9.17        10.29        14.53        16.34        16.73         1.91 
TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML 
       16.50         5.03        11.08        12.99        88.83        94.03 
TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 
       32.65        59.38        30.87         5.46         9.90        28.08 
TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW 
        2.07        19.59        30.67        87.12        18.77        37.84 
TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 
       34.49        31.33        28.70        22.95        17.62        23.64 
TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD 
       32.61        16.08        98.24         5.85       106.39        69.50 
TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN 
       72.59        80.12        32.45        31.10        19.86        15.91 
TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX 
       18.61        15.16        14.07        36.13         7.92        22.32 
TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 
       23.51         7.13        20.02         8.19         2.04        17.03 
TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R2 TCGA-S9-A7R3 
       15.06        13.12        28.37        13.02        10.39        99.06 
TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 
       30.05        98.63        31.59        18.71        11.97        49.45 
TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C 
       48.33        49.32        34.78        48.39        24.92        16.18 
TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M 
       59.05        40.64        30.44        24.16        40.83        24.79 
TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TQ-A7RH TCGA-VM-A8C8 
       33.24        25.38        18.61        14.93        15.98        43.04 
TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CH 
       30.08        13.51         0.10         7.89        35.93        23.47 
TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K 
       37.05        16.01        23.21         8.05        51.06        13.32 
TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D 
       43.96        39.88        43.40        45.80        46.88        37.71 
TCGA-WY-A85E 
       20.81 

  DEL PEAK  6(1Q44) MUTATED DEL PEAK  6(1Q44) WILD-TYPE 
                       0.23                        0.03 
  DEL PEAK  6(1Q44) MUTATED DEL PEAK  6(1Q44) WILD-TYPE 
                     169.84                      211.17 
  DEL PEAK  6(1Q44) MUTATED DEL PEAK  6(1Q44) WILD-TYPE 
                     17.295                      14.530 
[1] "0.2 - 169.8 (17.3)" "0.0 - 211.2 (14.5)"
[1] "hr=" "1.2"
D38V2, continuous
D38V3, binary
                             cls
clus                            0   1
  DEL PEAK  6(1Q44) MUTATED    34  32
  DEL PEAK  6(1Q44) WILD-TYPE 536 440
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  6(1Q44) MUTATED     34   32
  DEL PEAK  6(1Q44) WILD-TYPE  536  440
                        clus
vv                       DEL PEAK  6(1Q44) MUTATED DEL PEAK  6(1Q44) WILD-TYPE
  BRAIN                                         34                         536
  CENTRAL NERVOUS SYSTEM                        32                         440
[1] 2 2
[1] FALSE
D38V4, binary
                             cls
clus                            0   1
  DEL PEAK  6(1Q44) MUTATED    26  40
  DEL PEAK  6(1Q44) WILD-TYPE 404 572
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  6(1Q44) MUTATED     26   40
  DEL PEAK  6(1Q44) WILD-TYPE  404  572
        clus
vv       DEL PEAK  6(1Q44) MUTATED DEL PEAK  6(1Q44) WILD-TYPE
  FEMALE                        26                         404
  MALE                          40                         572
[1] 2 2
[1] FALSE
D38V5, continuous
                             vv
clus                          ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  DEL PEAK  6(1Q44) MUTATED            13                             2
  DEL PEAK  6(1Q44) WILD-TYPE         163                            25
                             vv
clus                          OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  DEL PEAK  6(1Q44) MUTATED                 10                 9
  DEL PEAK  6(1Q44) WILD-TYPE              108               169
                             vv
clus                          TREATED PRIMARY GBM
  DEL PEAK  6(1Q44) MUTATED                     1
  DEL PEAK  6(1Q44) WILD-TYPE                  17
                             vv
clus                          UNTREATED PRIMARY (DE NOVO) GBM
  DEL PEAK  6(1Q44) MUTATED                                31
  DEL PEAK  6(1Q44) WILD-TYPE                             494
D38V6, multiclass
                                 clus
vv                                DEL PEAK  6(1Q44) MUTATED
  ASTROCYTOMA                                            13
  GLIOBLASTOMA MULTIFORME (GBM)                           2
  OLIGOASTROCYTOMA                                       10
  OLIGODENDROGLIOMA                                       9
  TREATED PRIMARY GBM                                     1
  UNTREATED PRIMARY (DE NOVO) GBM                        31
                                 clus
vv                                DEL PEAK  6(1Q44) WILD-TYPE
  ASTROCYTOMA                                             163
  GLIOBLASTOMA MULTIFORME (GBM)                            25
  OLIGOASTROCYTOMA                                        108
  OLIGODENDROGLIOMA                                       169
  TREATED PRIMARY GBM                                      17
  UNTREATED PRIMARY (DE NOVO) GBM                         494
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D38V7, binary
                             cls
clus                            0   1
  DEL PEAK  6(1Q44) MUTATED    31  35
  DEL PEAK  6(1Q44) WILD-TYPE 443 533
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  6(1Q44) MUTATED     31   35
  DEL PEAK  6(1Q44) WILD-TYPE  443  533
     clus
vv    DEL PEAK  6(1Q44) MUTATED DEL PEAK  6(1Q44) WILD-TYPE
  NO                         31                         443
  YES                        35                         533
[1] 2 2
[1] FALSE
                             vv
clus                          AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK  6(1Q44) MUTATED                                  0     1
  DEL PEAK  6(1Q44) WILD-TYPE                                1    20
                             vv
clus                          BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK  6(1Q44) MUTATED                           5    56
  DEL PEAK  6(1Q44) WILD-TYPE                        59   866
D38V8, multiclass
                                  clus
vv                                 DEL PEAK  6(1Q44) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                         0
  ASIAN                                                    1
  BLACK OR AFRICAN AMERICAN                                5
  WHITE                                                   56
                                  clus
vv                                 DEL PEAK  6(1Q44) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                           1
  ASIAN                                                     20
  BLACK OR AFRICAN AMERICAN                                 59
  WHITE                                                    866
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D38V9, binary
                             cls
clus                            0   1
  DEL PEAK  6(1Q44) MUTATED     2  53
  DEL PEAK  6(1Q44) WILD-TYPE  28 838
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  6(1Q44) MUTATED      2   53
  DEL PEAK  6(1Q44) WILD-TYPE   28  838
                        clus
vv                       DEL PEAK  6(1Q44) MUTATED DEL PEAK  6(1Q44) WILD-TYPE
  HISPANIC OR LATINO                             2                          28
  NOT HISPANIC OR LATINO                        53                         838
[1] 2 2
[1] FALSE

Clustering(39) Variable = DEL PEAK  7(2Q22.1) MUTATION ANALYSIS
D39V1, survival
                               sevent
clus2                             0   1
  DEL PEAK  7(2Q22.1) MUTATED    16  47
  DEL PEAK  7(2Q22.1) WILD-TYPE 464 512
  DEL PEAK  7(2Q22.1) MUTATED DEL PEAK  7(2Q22.1) WILD-TYPE 
                           63                           976 
  DEL PEAK  7(2Q22.1) MUTATED DEL PEAK  7(2Q22.1) WILD-TYPE 
                           47                           512 
$`DEL PEAK  7(2Q22.1) MUTATED`
TCGA-02-0024 TCGA-02-0059 TCGA-02-0074 TCGA-02-0075 TCGA-02-0289 TCGA-02-0338 
       53.10         9.57        10.19        20.84        14.20        10.59 
TCGA-02-2466 TCGA-06-0152 TCGA-06-0182 TCGA-06-0188 TCGA-06-0414 TCGA-06-0649 
       16.80        12.33         3.65        44.58        35.11         2.10 
TCGA-06-0749 TCGA-06-1087 TCGA-06-5416 TCGA-06-5856 TCGA-06-6390 TCGA-06-6694 
        2.70         4.04         6.71         3.75         5.39         7.36 
TCGA-06-A5U1 TCGA-06-A6S0 TCGA-12-0615 TCGA-12-0821 TCGA-12-0826 TCGA-12-1099 
        1.87         3.12        15.35        10.62        27.78         4.14 
TCGA-12-1598 TCGA-12-1600 TCGA-12-3646 TCGA-14-0736 TCGA-14-0783 TCGA-14-0812 
       15.65        14.73        44.02        15.12         6.21         3.25 
TCGA-14-0867 TCGA-15-1444 TCGA-15-1447 TCGA-16-0850 TCGA-19-1388 TCGA-19-1390 
        2.04        50.53        53.19        16.37        12.95        25.38 
TCGA-19-1392 TCGA-19-2625 TCGA-19-5956 TCGA-26-A7UX TCGA-28-2509 TCGA-28-5215 
        3.65         4.08        22.49        19.33         4.77        11.01 
TCGA-32-1978 TCGA-32-2615 TCGA-76-4934 TCGA-76-6191 TCGA-DB-5277 TCGA-DH-5142 
       15.85        15.95         2.53        16.70        50.86        30.31 
TCGA-DH-A7UR TCGA-DU-5851 TCGA-DU-6408 TCGA-DU-7014 TCGA-DU-A7T6 TCGA-FG-5963 
       54.25        17.46       114.08       117.40        17.98        25.48 
TCGA-HT-7477 TCGA-HT-7692 TCGA-HT-A618 TCGA-HT-A61B TCGA-HW-7493 TCGA-P5-A5F6 
       24.26         2.96        16.83        17.52        35.90         1.28 
TCGA-P5-A733 TCGA-QH-A6CW TCGA-TM-A84Q 
       13.61        13.61        25.38 

$`DEL PEAK  7(2Q22.1) WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
       11.77         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 
       20.71        82.59        20.61        87.06        77.65        20.12 
TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 
       42.74        24.59        12.16        90.58         2.83        14.14 
TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 
        3.62        10.72        10.52        18.31         6.87        14.73 
TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 
        3.22        15.09        12.59         6.54         2.50        19.86 
TCGA-02-0058 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 
        8.35         6.02        19.73        26.43        28.70        25.05 
TCGA-02-0071 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 
        5.49        27.25        89.72        22.72        12.62        51.32 
TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 
        8.81        57.76        16.96         3.48        27.02        65.00 
TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 
       11.67        17.65        23.18        92.65        99.98        15.65 
TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 
       48.95        16.54        16.93        17.72        10.75        14.47 
TCGA-02-0281 TCGA-02-0285 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 
        3.98        13.87        15.95        12.23         9.90         7.73 
TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 
       10.62         7.33        15.91        25.71         4.37        25.12 
TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 
       12.39        14.50        10.55        47.11        11.34         9.27 
TCGA-02-0451 TCGA-02-0456 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 
       16.21         3.35        12.92        15.32        15.45        20.32 
TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 
        2.70         6.15        20.38        47.61         6.94         3.98 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 
       22.72        33.67        12.95        25.35        14.30        26.70 
TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 
       24.23        11.90         0.20        10.29         2.20        11.74 
TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 
        2.33        20.09        17.79        10.09         8.61        19.46 
TCGA-06-0151 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 
       46.59        13.94        10.45         3.19        10.82         9.44 
TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 
       11.80         3.42        56.91        10.65         5.85        19.66 
TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 
        3.29        13.12         4.47         3.22         4.04        91.00 
TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 
        4.18        88.14        20.25        69.90        73.84        27.22 
TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 
       15.42        10.42        38.96         4.67         7.40         5.56 
TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 
        0.39         7.66         8.42         7.63         7.40        11.84 
TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 
        0.53        15.02        24.16         0.72        19.82        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 
       13.32        20.42        48.69        10.82         9.01         0.26 
TCGA-06-0409 TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 TCGA-06-0644 TCGA-06-0645 
       72.36         4.70         9.57         3.16        12.62         5.75 
TCGA-06-0646 TCGA-06-0648 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        5.75         9.80        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 
        7.86         2.70         0.92        43.46        46.19         5.65 
TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 
        7.17        40.41        16.57        20.78        26.76        23.93 
TCGA-06-1086 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 
        6.84        26.79        11.84        15.32        13.61        33.90 
TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 
       15.32         1.08        12.49         4.93        17.65        12.56 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 
       30.64         5.95        16.64         5.98         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       31.50        11.74         3.55         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5418 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 
        8.98         8.55         2.73         6.15         4.57         5.23 
TCGA-06-6389 TCGA-06-6391 TCGA-06-6693 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 
        7.79         1.48       120.56         8.32        12.85         4.77 
TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-06-A5U0 TCGA-06-A6S1 TCGA-06-A7TK 
        1.55         4.77         4.96         4.70         2.56         5.39 
TCGA-06-A7TL TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 
        5.42        22.68        37.84         4.18       115.86         1.74 
TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 
        8.42        25.71        12.16         9.80        29.23        65.33 
TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 
        1.28         8.42        17.95        24.56        31.10        37.58 
TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 
       22.29         3.39        12.23        14.93        18.02        15.35 
TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 
       13.97         0.72        12.56         4.27        42.15        11.08 
TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 
       19.59        58.68        19.33        10.75         4.80         7.27 
TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
       15.98        18.41         7.56        14.73        12.99        34.92 
TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 
       10.45         7.59        94.78         0.10        38.17        25.97 
TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 
       26.66        12.13         3.65        20.38        28.41        15.06 
TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 
       53.85        43.23         7.63         9.73        14.93        14.86 
TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0822 TCGA-12-0827 TCGA-12-0828 
       91.76        24.79        18.48        23.51        38.76         8.94 
TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 
       20.58       127.59         5.82         7.59        33.21        21.73 
TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 
       15.98        12.23        15.85         9.11        14.53         3.98 
TCGA-12-1599 TCGA-12-1602 TCGA-12-3644 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 
       25.68         6.77        59.77        26.93        15.22        10.95 
TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 
       12.69        34.92        14.53        14.93         3.22         2.04 
TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 
       11.97         0.95        23.05         2.24        11.24        13.78 
TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 TCGA-14-0871 
        1.35         5.39         2.89        16.50        26.33        28.93 
TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 
       15.95        19.30         0.79         1.38         1.12         3.75 
TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 
       32.05        58.78        23.11         7.10         1.15        30.18 
TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 
        0.92        40.96         6.67        12.43         0.99         1.97 
TCGA-14-1821 TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 
       17.79        17.85         7.63         5.88         7.17        17.49 
TCGA-14-2555 TCGA-14-3477 TCGA-14-4157 TCGA-15-0742 TCGA-15-1446 TCGA-15-1449 
        7.96         3.78         3.42        13.78        19.10        13.28 
TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 
        3.91        17.59        26.07         4.31        29.03         4.57 
TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 
       10.29        14.01         9.14        21.24        13.97         6.41 
TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 
       11.77        21.90         8.61         0.66        14.27         3.39 
TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1389 TCGA-19-1786 TCGA-19-1787 
       10.75         9.07         5.95         4.64         7.17        12.66 
TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 
        3.25         0.13         9.67         4.87         1.08         7.53 
TCGA-19-2624 TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 
        0.16        24.23         7.00         7.04         6.64        17.19 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 
        8.02        18.90         4.73        12.10         1.78        14.07 
TCGA-19-5959 TCGA-19-5960 TCGA-19-A60I TCGA-19-A6J4 TCGA-19-A6J5 TCGA-26-1438 
       16.80        14.96        17.79         3.98        28.54        10.03 
TCGA-26-1439 TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 
       13.87         9.73        31.33         7.13         9.37         9.40 
TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 
       14.86         5.49         8.88        18.97         1.58         7.92 
TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 
        2.33         5.06        16.60         9.86        24.23        40.54 
TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 
       21.30        30.05        14.04        11.51        24.76        10.39 
TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 
       10.39        16.08         7.59         2.86        14.40        15.78 
TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 
        0.20         2.53         9.21         8.35         7.63         8.48 
TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 
        1.22         1.55         2.83         0.13         0.66         6.74 
TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 
        7.30         5.26        14.93        11.28        17.88        14.53 
TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 
       11.77        31.27        23.44        13.64         5.16        22.68 
TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 
       12.76         5.42        15.39        21.07         0.49         0.10 
TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 
       19.50         1.18         4.67        12.69        14.86        16.93 
TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2616 TCGA-32-2632 TCGA-32-2634 
       12.23        20.78        15.02         7.36         8.84        22.78 
TCGA-32-2638 TCGA-32-4208 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 
       25.18        21.14         3.72        12.59        19.86        10.85 
TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 
       19.23         0.85        13.35         8.94         9.53         0.99 
TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-4W-AA9S 
        4.44        11.84         0.20        15.12        12.46         4.14 
TCGA-4W-AA9T TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 
       14.76         3.45        20.91         4.34        14.33         8.22 
TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 
        7.50         4.80         4.54         3.09         3.65         9.17 
TCGA-76-4935 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 
       10.78         3.29         2.70        11.38        17.06         8.35 
TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 
       20.98         4.83         5.03         0.23         9.27         7.73 
TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 TCGA-OX-A56R TCGA-RR-A6KA 
        7.79         1.61        17.72        26.30         5.92         6.28 
TCGA-RR-A6KC TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 
       20.55         4.70         7.69        43.89        18.15        10.62 
TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 
       64.64        40.18         0.10        21.01         9.96         6.38 
TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 
       17.69        23.84        17.95        12.43         8.48         7.56 
TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 
        8.02         7.40         6.61       122.73        81.96        75.25 
TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 
       47.93        72.92        50.17        44.52        36.56        78.28 
TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE 
       46.42        18.84        30.21        46.72        39.78        37.45 
TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P 
       33.57        72.95        31.63        24.20        25.48        30.12 
TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W 
        5.98        31.40        27.45        27.81        29.23        14.40 
TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P 
       18.51        12.10        11.24        17.88        30.74        16.18 
TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B 
       19.96        31.82        14.40         8.02        30.21        42.05 
TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU 
       27.81        17.19        17.19        13.12        13.38         3.45 
TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 
       18.61        18.02        14.56         6.74        13.38         8.45 
TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 
        6.81       182.33        18.94        17.49        15.16       211.17 
TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 
       52.11        22.42        49.02        75.16        46.06        65.75 
TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 
        1.22        87.45         7.04        11.64       133.74        19.89 
TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 
       16.83        94.52         7.96         7.73        11.47        62.96 
TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 
      156.23       138.28        14.99       105.21         6.54         8.84 
TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 
       90.77        30.67        26.30        10.36         7.96        94.32 
TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 
       18.94        44.02        62.01        25.91        60.30        23.31 
TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 
       41.98         2.76         5.10        23.74        14.60        20.68 
TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP 
       21.40        19.13        16.96        15.48        14.17        14.24 
TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY 
       12.59        15.12         4.96         3.65         5.65        12.20 
TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K 
        8.65         2.70        77.98         7.23         5.98        11.41 
TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB 
       26.76         7.13        21.30       124.50        77.88        42.31 
TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 
       23.51         7.50        44.42         0.56        50.14        67.46 
TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 
       41.13        79.99        57.93       134.27        78.21        95.57 
TCGA-E1-5322 TCGA-E1-A7YO TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7Z6 TCGA-EZ-7264 
      130.78        75.02        32.45        36.82        32.35        14.33 
TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 
        0.23         0.20        47.77        34.36        36.82        18.77 
TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 
       14.93        24.99        23.97        18.44        15.35        17.88 
TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 
       22.55        20.61        20.09        12.95        13.68        14.24 
TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT 
       16.01        20.09        14.96        22.52        32.61        38.27 
TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K 
       10.72        18.38        18.71        23.70        14.76        17.82 
TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z 
       16.41        15.02        16.44        22.26        28.54        10.78 
TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 
       36.66        48.69        20.45        13.58         5.72        27.52 
TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 
        0.10         6.67        11.54        40.11         0.13         0.03 
TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7478 TCGA-HT-7479 
       16.54         3.75        17.42         6.54         6.38        40.34 
TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 
       75.19        95.93       106.95       172.77         4.01         5.03 
TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 
       29.85        23.18       122.47         4.57        17.29         3.16 
TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 
       22.06        45.99        56.09        57.60         0.23        14.27 
TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 
        0.16        16.24         0.76        44.68         6.05        42.74 
TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7693 
        0.10        31.69        14.96         0.10         0.10        17.52 
TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 
        6.90        14.53        39.48        19.23        39.09         0.23 
TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 
       50.63         0.49        23.61        37.15         0.33         0.13 
TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 
        3.68         5.33        35.47         3.72        11.28        31.43 
TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 
        1.64        16.24         9.40        63.55         0.10        37.87 
TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 
       33.01        12.23         6.25         0.10         0.46         2.50 
TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8563 
        5.56        13.78         0.23        29.59        34.19        28.27 
TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 
       15.72         0.23        26.04         0.13        20.22         0.07 
TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 
       27.35         0.10         5.33         2.70        16.93         1.81 
TCGA-HT-A617 TCGA-HT-A619 TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K 
       16.14        21.40        17.65         2.43        10.52        15.35 
TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 
       11.05         0.10        29.92        19.89         8.32        19.23 
TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 
       40.18         4.31        21.70        21.60        19.59        17.82 
TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 
       20.35        12.76        20.81        20.71        19.00        42.77 
TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY 
       14.40        14.40         0.23         6.71         1.64         2.37 
TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A72U 
        2.30         4.11         5.88         7.63         0.76         0.16 
TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-QH-A65R 
       10.42        13.25        11.64         0.20         9.01        15.16 
TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU 
        2.53        12.62        15.85        14.04        19.33        14.83 
TCGA-QH-A6CV TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 
       14.53        12.23         2.20         9.17        10.29        14.53 
TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X 
       16.34        16.73         1.91        16.50         5.03        11.08 
TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X 
       12.99        88.83        94.03        32.65        59.38        30.87 
TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 
        5.46         9.90        28.08         2.07        19.59        30.67 
TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY 
       62.17        87.12        18.77        37.84        34.49        31.33 
TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 
       28.70        22.95        17.62        23.64        32.61        16.08 
TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE 
       98.24        95.93         5.85       106.39        69.50        72.59 
TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN 
       80.12        32.45        84.99        31.10        19.86        15.91 
TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX 
       18.61        15.16        14.07        36.13         7.92        22.32 
TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 
       23.51         7.13        20.02         8.19         2.04        17.03 
TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 
       15.06        13.12        28.37        13.02       169.84        10.39 
TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z 
       99.06        30.05        98.63        31.59        18.71        11.97 
TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B 
       49.45        48.33        49.32        34.78        48.39        24.92 
TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J 
       16.18        59.05        40.64        30.44        28.08        24.16 
TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T 
       40.83        24.79        33.24        18.61        14.93        23.80 
TCGA-TQ-A7RH TCGA-TQ-A7RW TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB 
       15.98        26.99        43.04        30.08        13.51         0.10 
TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS 
        7.89        35.93        23.47        37.05        16.01        23.21 
TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A 
        8.05        51.06        13.32        43.96        39.88        43.40 
TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       45.80        46.88        37.71        20.81 

  DEL PEAK  7(2Q22.1) MUTATED DEL PEAK  7(2Q22.1) WILD-TYPE 
                         1.28                          0.03 
  DEL PEAK  7(2Q22.1) MUTATED DEL PEAK  7(2Q22.1) WILD-TYPE 
                       117.40                        211.17 
  DEL PEAK  7(2Q22.1) MUTATED DEL PEAK  7(2Q22.1) WILD-TYPE 
                        15.12                         14.76 
[1] "1.3 - 117.4 (15.1)" "0.0 - 211.2 (14.8)"
[1] "hr=" "1.5"
D39V2, continuous
D39V3, binary
                               cls
clus                              0   1
  DEL PEAK  7(2Q22.1) MUTATED    46  17
  DEL PEAK  7(2Q22.1) WILD-TYPE 524 455
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  7(2Q22.1) MUTATED     46   17
  DEL PEAK  7(2Q22.1) WILD-TYPE  524  455
                        clus
vv                       DEL PEAK  7(2Q22.1) MUTATED
  BRAIN                                           46
  CENTRAL NERVOUS SYSTEM                          17
                        clus
vv                       DEL PEAK  7(2Q22.1) WILD-TYPE
  BRAIN                                            524
  CENTRAL NERVOUS SYSTEM                           455
[1] 2 2
[1] FALSE
D39V4, binary
                               cls
clus                              0   1
  DEL PEAK  7(2Q22.1) MUTATED    28  35
  DEL PEAK  7(2Q22.1) WILD-TYPE 402 577
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  7(2Q22.1) MUTATED     28   35
  DEL PEAK  7(2Q22.1) WILD-TYPE  402  577
        clus
vv       DEL PEAK  7(2Q22.1) MUTATED DEL PEAK  7(2Q22.1) WILD-TYPE
  FEMALE                          28                           402
  MALE                            35                           577
[1] 2 2
[1] FALSE
D39V5, continuous
                               vv
clus                            ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  DEL PEAK  7(2Q22.1) MUTATED             9                             4
  DEL PEAK  7(2Q22.1) WILD-TYPE         167                            23
                               vv
clus                            OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  DEL PEAK  7(2Q22.1) MUTATED                  3                 5
  DEL PEAK  7(2Q22.1) WILD-TYPE              115               173
                               vv
clus                            TREATED PRIMARY GBM
  DEL PEAK  7(2Q22.1) MUTATED                     2
  DEL PEAK  7(2Q22.1) WILD-TYPE                  16
                               vv
clus                            UNTREATED PRIMARY (DE NOVO) GBM
  DEL PEAK  7(2Q22.1) MUTATED                                40
  DEL PEAK  7(2Q22.1) WILD-TYPE                             485
D39V6, multiclass
                                 clus
vv                                DEL PEAK  7(2Q22.1) MUTATED
  ASTROCYTOMA                                               9
  GLIOBLASTOMA MULTIFORME (GBM)                             4
  OLIGOASTROCYTOMA                                          3
  OLIGODENDROGLIOMA                                         5
  TREATED PRIMARY GBM                                       2
  UNTREATED PRIMARY (DE NOVO) GBM                          40
                                 clus
vv                                DEL PEAK  7(2Q22.1) WILD-TYPE
  ASTROCYTOMA                                               167
  GLIOBLASTOMA MULTIFORME (GBM)                              23
  OLIGOASTROCYTOMA                                          115
  OLIGODENDROGLIOMA                                         173
  TREATED PRIMARY GBM                                        16
  UNTREATED PRIMARY (DE NOVO) GBM                           485
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D39V7, binary
                               cls
clus                              0   1
  DEL PEAK  7(2Q22.1) MUTATED    30  33
  DEL PEAK  7(2Q22.1) WILD-TYPE 444 535
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  7(2Q22.1) MUTATED     30   33
  DEL PEAK  7(2Q22.1) WILD-TYPE  444  535
     clus
vv    DEL PEAK  7(2Q22.1) MUTATED DEL PEAK  7(2Q22.1) WILD-TYPE
  NO                           30                           444
  YES                          33                           535
[1] 2 2
[1] FALSE
                               vv
clus                            AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK  7(2Q22.1) MUTATED                                  0     0
  DEL PEAK  7(2Q22.1) WILD-TYPE                                1    21
                               vv
clus                            BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK  7(2Q22.1) MUTATED                           6    57
  DEL PEAK  7(2Q22.1) WILD-TYPE                        58   865
D39V8, multiclass
                                  clus
vv                                 DEL PEAK  7(2Q22.1) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                           0
  ASIAN                                                      0
  BLACK OR AFRICAN AMERICAN                                  6
  WHITE                                                     57
                                  clus
vv                                 DEL PEAK  7(2Q22.1) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                             1
  ASIAN                                                       21
  BLACK OR AFRICAN AMERICAN                                   58
  WHITE                                                      865
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D39V9, binary
                               cls
clus                              0   1
  DEL PEAK  7(2Q22.1) MUTATED     0  55
  DEL PEAK  7(2Q22.1) WILD-TYPE  30 836
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  7(2Q22.1) MUTATED      0   55
  DEL PEAK  7(2Q22.1) WILD-TYPE   30  836
                        clus
vv                       DEL PEAK  7(2Q22.1) MUTATED
  HISPANIC OR LATINO                               0
  NOT HISPANIC OR LATINO                          55
                        clus
vv                       DEL PEAK  7(2Q22.1) WILD-TYPE
  HISPANIC OR LATINO                                30
  NOT HISPANIC OR LATINO                           836
[1] 2 2
[1] FALSE

Clustering(40) Variable = DEL PEAK  8(2Q37.1) MUTATION ANALYSIS
D40V1, survival
                               sevent
clus2                             0   1
  DEL PEAK  8(2Q37.1) MUTATED    50  63
  DEL PEAK  8(2Q37.1) WILD-TYPE 430 496
  DEL PEAK  8(2Q37.1) MUTATED DEL PEAK  8(2Q37.1) WILD-TYPE 
                          113                           926 
  DEL PEAK  8(2Q37.1) MUTATED DEL PEAK  8(2Q37.1) WILD-TYPE 
                           63                           496 
$`DEL PEAK  8(2Q37.1) MUTATED`
TCGA-02-0025 TCGA-02-0059 TCGA-02-0074 TCGA-02-0075 TCGA-02-0080 TCGA-02-0084 
       42.74         9.57        10.19        20.84        89.72        12.62 
TCGA-02-0104 TCGA-02-0338 TCGA-06-0152 TCGA-06-0182 TCGA-06-0188 TCGA-06-0221 
       65.00        10.59        12.33         3.65        44.58        19.82 
TCGA-06-0414 TCGA-06-0649 TCGA-06-2562 TCGA-06-5416 TCGA-06-5856 TCGA-06-6694 
       35.11         2.10        12.56         6.71         3.75         7.36 
TCGA-06-A6S0 TCGA-08-0351 TCGA-08-0355 TCGA-08-0512 TCGA-12-0703 TCGA-12-0826 
        3.12        65.33        24.56        42.15        20.38        27.78 
TCGA-12-1099 TCGA-12-1600 TCGA-12-3646 TCGA-12-5301 TCGA-14-0783 TCGA-14-0812 
        4.14        14.73        44.02         2.04         6.21         3.25 
TCGA-14-0867 TCGA-14-1821 TCGA-14-4157 TCGA-15-1444 TCGA-15-1447 TCGA-16-0850 
        2.04        17.79         3.42        50.53        53.19        16.37 
TCGA-16-1047 TCGA-19-1388 TCGA-19-1390 TCGA-19-1392 TCGA-19-2625 TCGA-19-5956 
        4.57        12.95        25.38         3.65         4.08        22.49 
TCGA-27-2521 TCGA-28-1750 TCGA-28-2509 TCGA-28-5215 TCGA-32-1978 TCGA-32-2495 
       10.39         8.35         4.77        11.01        15.85        15.02 
TCGA-32-2615 TCGA-41-3393 TCGA-41-6646 TCGA-76-4934 TCGA-76-6280 TCGA-76-6657 
       15.95         4.44        12.46         2.53        11.38         5.03 
TCGA-CS-6666 TCGA-DB-5270 TCGA-DB-5277 TCGA-DH-5142 TCGA-DH-A669 TCGA-DH-A66B 
        8.48       122.73        50.86        30.31        30.21        42.05 
TCGA-DH-A7UR TCGA-DU-5855 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6407 TCGA-DU-6408 
       54.25         6.81        49.02        75.16        94.52       114.08 
TCGA-DU-6542 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7014 TCGA-DU-7304 TCGA-DU-8167 
        7.73        62.96       156.23       117.40        23.31        15.48 
TCGA-DU-A5TR TCGA-DU-A5TY TCGA-DU-A6S7 TCGA-DU-A7T6 TCGA-E1-5304 TCGA-F6-A8O4 
       12.59        12.20         7.23        17.98        41.13         0.20 
TCGA-FG-A6J3 TCGA-HT-7473 TCGA-HT-7477 TCGA-HT-7601 TCGA-HT-7606 TCGA-HT-7690 
       22.26        16.54        24.26         5.03        17.29         0.10 
TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7855 TCGA-HT-7860 TCGA-HT-8013 TCGA-HT-A618 
        2.96        17.52        19.23         0.49        63.55        16.83 
TCGA-HT-A61B TCGA-HW-7493 TCGA-HW-8321 TCGA-HW-A5KK TCGA-IK-7675 TCGA-P5-A5EW 
       17.52        35.90        19.59        12.76        19.00         6.71 
TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A733 TCGA-QH-A6CV TCGA-QH-A6CW 
        1.28         0.16        10.42        13.61        14.53        13.61 
TCGA-QH-A6X3 TCGA-RY-A83Z TCGA-S9-A6TV TCGA-S9-A6U6 TCGA-S9-A6WG TCGA-S9-A6WQ 
       10.29         9.90        18.77        16.08        80.12        14.07 
TCGA-S9-A89Z TCGA-TM-A7CA TCGA-TM-A84I TCGA-TM-A84L TCGA-TM-A84Q 
       11.97        34.78        28.08        40.83        25.38 

$`DEL PEAK  8(2Q37.1) WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
       11.77         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 
       20.71        82.59        20.61        87.06        77.65        20.12 
TCGA-02-0024 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 
       53.10        24.59        12.16        90.58         2.83        14.14 
TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 
        3.62        10.72        10.52        18.31         6.87        14.73 
TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 
        3.22        15.09        12.59         6.54         2.50        19.86 
TCGA-02-0058 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 
        8.35         6.02        19.73        26.43        28.70        25.05 
TCGA-02-0071 TCGA-02-0079 TCGA-02-0083 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 
        5.49        27.25        22.72        51.32         8.81        57.76 
TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 
       16.96         3.48        27.02        11.67        17.65        23.18 
TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 
       92.65        99.98        15.65        48.95        16.54        16.93 
TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 
       17.72        10.75        14.47         3.98        13.87        14.20 
TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 
       15.95        12.23         9.90         7.73        10.62         7.33 
TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0339 TCGA-02-0422 
       15.91        25.71         4.37        25.12        12.39        14.50 
TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 
       10.55        47.11        11.34         9.27        16.21         3.35 
TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 
       16.80        12.92        15.32        15.45        20.32         2.70 
TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 
        6.15        20.38        47.61         6.94         3.98        22.72 
TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 
       33.67        12.95        25.35        14.30        26.70        24.23 
TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 
       11.90         0.20        10.29         2.20        11.74         2.33 
TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 
       20.09        17.79        10.09         8.61        19.46        46.59 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 
       13.94        10.45         3.19        10.82         9.44        11.80 
TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 
        3.42        56.91        10.65         5.85        19.66         3.29 
TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 
       13.12         4.47         3.22         4.04        91.00         4.18 
TCGA-06-0178 TCGA-06-0179 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0189 
       88.14        20.25        69.90        73.84        27.22        15.42 
TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 
       10.42        38.96         4.67         7.40         5.56         0.39 
TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 
        7.66         8.42         7.63         7.40        11.84         0.53 
TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 
       15.02        24.16         0.72        13.64        13.32        20.42 
TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 
       48.69        10.82         9.01         0.26        72.36         4.70 
TCGA-06-0412 TCGA-06-0413 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 
        9.57         3.16        12.62         5.75         5.75         9.80 
TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 
       23.57        14.20        26.40        46.88         7.86         2.70 
TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 
        2.70         0.92        43.46        46.19         5.65         7.17 
TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 
       40.41        16.57        20.78        26.76        23.93         6.84 
TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 
        4.04        26.79        11.84        15.32        13.61        33.90 
TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2563 
       15.32         1.08        12.49         4.93        17.65        30.64 
TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 
        5.95        16.64         5.98         4.37         0.43        31.50 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 
       11.74         3.55         8.35         4.54         8.81         8.98 
TCGA-06-5415 TCGA-06-5418 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 
        8.55         2.73         6.15         4.57         5.23         7.79 
TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 
        5.39         1.48       120.56         8.32        12.85         4.77 
TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-06-A5U0 TCGA-06-A5U1 TCGA-06-A6S1 
        1.55         4.77         4.96         4.70         1.87         2.56 
TCGA-06-A7TK TCGA-06-A7TL TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 TCGA-08-0344 
        5.39         5.42        22.68        37.84         4.18       115.86 
TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 
        1.74         8.42        25.71        12.16         9.80        29.23 
TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 
        1.28         8.42        17.95        31.10        37.58        22.29 
TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 
        3.39        12.23        14.93        18.02        15.35        13.97 
TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 
        0.72        12.56         4.27        11.08        19.59        58.68 
TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 
       19.33        10.75         4.80         7.27        15.98        18.41 
TCGA-08-0531 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 
        7.56        15.35        14.73        12.99        34.92        10.45 
TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 
        7.59        94.78         0.10        38.17        25.97        26.66 
TCGA-12-0691 TCGA-12-0692 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 
       12.13         3.65        28.41        15.06        53.85        43.23 
TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 
        7.63         9.73        14.93        14.86        91.76        24.79 
TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 
       18.48        10.62        23.51        38.76         8.94        20.58 
TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 
      127.59         5.82         7.59        33.21        21.73        15.98 
TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-12-1598 
       12.23        15.85         9.11        14.53         3.98        15.65 
TCGA-12-1599 TCGA-12-1602 TCGA-12-3644 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 
       25.68         6.77        59.77        26.93        15.22        10.95 
TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-14-0736 
       12.69        34.92        14.53        14.93         3.22        15.12 
TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 
       11.97         0.95        23.05         2.24        11.24        13.78 
TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 TCGA-14-0871 
        1.35         5.39         2.89        16.50        26.33        28.93 
TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 
       15.95        19.30         0.79         1.38         1.12         3.75 
TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 
       32.05        58.78        23.11         7.10         1.15        30.18 
TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 
        0.92        40.96         6.67        12.43         0.99         1.97 
TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 
       17.85         7.63         5.88         7.17        17.49         7.96 
TCGA-14-3477 TCGA-15-0742 TCGA-15-1446 TCGA-15-1449 TCGA-16-0846 TCGA-16-0848 
        3.78        13.78        19.10        13.28         3.91        17.59 
TCGA-16-0849 TCGA-16-0861 TCGA-16-1045 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 
       26.07         4.31        29.03        10.29        14.01         9.14 
TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 
       21.24        13.97         6.41        11.77        21.90         8.61 
TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 
        0.66        14.27         3.39        10.75         9.07         5.95 
TCGA-19-1389 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 
        4.64         7.17        12.66         3.25         0.13         9.67 
TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2629 TCGA-19-2631 
        4.87         1.08         7.53         0.16        24.23         7.00 
TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 
        7.04         6.64        17.19         8.02        18.90         4.73 
TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-19-A60I 
       12.10         1.78        14.07        16.80        14.96        17.79 
TCGA-19-A6J4 TCGA-19-A6J5 TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 TCGA-26-1442 
        3.98        28.54        10.03        13.87         9.73        31.33 
TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 
        7.13         9.37         9.40        14.86         5.49         8.88 
TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-26-A7UX TCGA-27-1830 
       18.97         1.58         7.92         2.33        19.33         5.06 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 
       16.60         9.86        24.23        40.54        21.30        30.05 
TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2523 TCGA-27-2524 
       14.04        11.51        24.76        10.39        16.08         7.59 
TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 
        2.86        14.40        15.78         0.20         2.53         9.21 
TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 
        7.63         8.48         1.22         1.55         2.83         0.13 
TCGA-28-2502 TCGA-28-2506 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 
        0.66         6.74         7.30         5.26        14.93        11.28 
TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5216 
       17.88        14.53        11.77        31.27        23.44        13.64 
TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 
        5.16        22.68        12.76         5.42        15.39        21.07 
TCGA-32-1976 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 
        0.49         0.10        19.50         1.18         4.67        12.69 
TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2616 TCGA-32-2632 
       14.86        16.93        12.23        20.78         7.36         8.84 
TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 
       22.78        25.18        21.14         3.72        12.59        19.86 
TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 
       10.85        19.23         0.85        13.35         8.94         9.53 
TCGA-41-3392 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-4W-AA9S TCGA-4W-AA9T 
        0.99        11.84         0.20        15.12         4.14        14.76 
TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 
        3.45        20.91         4.34        14.33         8.22         7.50 
TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4935 
        4.80         4.54         3.09         3.65         9.17        10.78 
TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 
       16.70         3.29         2.70        17.06         8.35        20.98 
TCGA-76-6656 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 
        4.83         0.23         9.27         7.73         7.79         1.61 
TCGA-81-5911 TCGA-87-5896 TCGA-OX-A56R TCGA-RR-A6KA TCGA-RR-A6KC TCGA-CS-4938 
       17.72        26.30         5.92         6.28        20.55         4.70 
TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 
        7.69        43.89        18.15        10.62        64.64        40.18 
TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 
        0.10        21.01         9.96         6.38        17.69        23.84 
TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 
       17.95        12.43         7.56         8.02         7.40         6.61 
TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5278 TCGA-DB-5279 
       81.96        75.25        47.93        72.92        50.17        44.52 
TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC 
       36.56        78.28        46.42        18.84        30.21        46.72 
TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L 
       39.78        37.45        33.57        72.95        31.63        24.20 
TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U 
       25.48        30.12         5.98        31.40        27.45        27.81 
TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M 
       29.23        14.40        18.51        12.10        11.24        17.88 
TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5143 TCGA-DH-5144 
       30.74        16.18        19.96        31.82        14.40         8.02 
TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU 
       27.81        17.19        17.19        13.12        13.38         3.45 
TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 
       18.61        18.02        14.56        17.46         6.74        13.38 
TCGA-DU-5854 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 
        8.45       182.33        18.94        17.49        15.16       211.17 
TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 
       52.11        22.42        46.06        65.75         1.22        87.45 
TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6410 
        7.04        11.64       133.74        19.89        16.83         7.96 
TCGA-DU-7006 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 
       11.47       138.28        14.99       105.21         6.54         8.84 
TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 
       90.77        30.67        26.30        10.36         7.96        94.32 
TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7306 
       18.94        44.02        62.01        25.91        60.30        41.98 
TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 
        2.76         5.10        23.74        14.60        20.68        21.40 
TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TS TCGA-DU-A5TT 
       19.13        16.96        14.17        14.24        15.12         4.96 
TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S8 
        3.65         5.65         8.65         2.70        77.98         5.98 
TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T8 TCGA-DU-A7TA 
       11.41        26.76         7.13        21.30       124.50        77.88 
TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 
       42.31        23.51         7.50        44.42         0.56        50.14 
TCGA-E1-5303 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 
       67.46        79.99        57.93       134.27        78.21        95.57 
TCGA-E1-5322 TCGA-E1-A7YO TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7Z6 TCGA-EZ-7264 
      130.78        75.02        32.45        36.82        32.35        14.33 
TCGA-F6-A8O3 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 
        0.23        47.77        25.48        34.36        36.82        18.77 
TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 
       14.93        24.99        23.97        18.44        15.35        17.88 
TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 
       22.55        20.61        20.09        12.95        13.68        14.24 
TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT 
       16.01        20.09        14.96        22.52        32.61        38.27 
TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K 
       10.72        18.38        18.71        23.70        14.76        17.82 
TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 
       16.41        15.02        16.44        28.54        10.78        36.66 
TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 
       48.69        20.45        13.58         5.72        27.52         0.10 
TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7474 
        6.67        11.54        40.11         0.13         0.03         3.75 
TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 
       17.42         6.54         6.38        40.34        75.19        95.93 
TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 
      106.95       172.77         4.01        29.85        23.18       122.47 
TCGA-HT-7605 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 
        4.57         3.16        22.06        45.99        56.09        57.60 
TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 
        0.23        14.27         0.16        16.24         0.76        44.68 
TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7691 
        6.05        42.74         0.10        31.69        14.96         0.10 
TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 
        6.90        14.53        39.48        39.09         0.23        50.63 
TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 
       23.61        37.15         0.33         0.13         3.68         5.33 
TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 
       35.47         3.72        11.28        31.43         1.64        16.24 
TCGA-HT-8012 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 
        9.40         0.10        37.87        33.01        12.23         6.25 
TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 
        0.10         0.46         2.50         5.56        13.78         0.23 
TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV 
       29.59        34.19        28.27        15.72         0.23        26.04 
TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC 
        0.13        20.22         0.07        27.35         0.10         5.33 
TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A619 TCGA-HT-A61C 
        2.70        16.93         1.81        16.14        21.40        17.65 
TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 
        2.43        10.52        15.35        11.05         0.10        29.92 
TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 
       19.89         8.32        19.23        40.18         4.31        21.70 
TCGA-HW-8320 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-8125 
       21.60        17.82        20.35        20.81        20.71        42.77 
TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ 
       14.40        14.40         0.23         1.64         2.37         2.30 
TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A72X TCGA-P5-A72Z 
        4.11         5.88         7.63         0.76        13.25        11.64 
TCGA-P5-A730 TCGA-P5-A731 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X 
        0.20         9.01        15.16         2.53        12.62        15.85 
TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ 
       14.04        19.33        14.83        12.23         2.20         9.17 
TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC 
       14.53        16.34        16.73         1.91        16.50         5.03 
TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M 
       11.08        12.99        88.83        94.03        32.65        59.38 
TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 
       30.87         5.46        28.08         2.07        19.59        30.67 
TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ 
       62.17        87.12        37.84        34.49        31.33        28.70 
TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U8 TCGA-S9-A6U9 
       22.95        17.62        23.64        32.61        98.24        95.93 
TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WH TCGA-S9-A6WI 
        5.85       106.39        69.50        72.59        32.45        84.99 
TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A7IQ 
       31.10        19.86        15.91        18.61        15.16        36.13 
TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 
        7.92        22.32        23.51         7.13        20.02         8.19 
TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ 
        2.04        17.03        15.06        13.12        28.37        13.02 
TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 
      169.84        10.39        99.06        30.05        98.63        31.59 
TCGA-S9-A89V TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CF TCGA-TM-A84B 
       18.71        49.45        48.33        49.32        48.39        24.92 
TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84J TCGA-TM-A84M 
       16.18        59.05        40.64        30.44        24.16        24.79 
TCGA-TM-A84O TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RH TCGA-TQ-A7RW 
       33.24        18.61        14.93        23.80        15.98        26.99 
TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE 
       43.04        30.08        13.51         0.10         7.89        35.93 
TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 
       23.47        37.05        16.01        23.21         8.05        51.06 
TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C 
       13.32        43.96        39.88        43.40        45.80        46.88 
TCGA-WY-A85D TCGA-WY-A85E 
       37.71        20.81 

  DEL PEAK  8(2Q37.1) MUTATED DEL PEAK  8(2Q37.1) WILD-TYPE 
                         0.10                          0.03 
  DEL PEAK  8(2Q37.1) MUTATED DEL PEAK  8(2Q37.1) WILD-TYPE 
                       156.23                        211.17 
  DEL PEAK  8(2Q37.1) MUTATED DEL PEAK  8(2Q37.1) WILD-TYPE 
                       15.480                        14.745 
[1] "0.1 - 156.2 (15.5)" "0.0 - 211.2 (14.7)"
[1] "hr=" "1.1"
D40V2, continuous
D40V3, binary
                               cls
clus                              0   1
  DEL PEAK  8(2Q37.1) MUTATED    54  59
  DEL PEAK  8(2Q37.1) WILD-TYPE 516 413
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  8(2Q37.1) MUTATED     54   59
  DEL PEAK  8(2Q37.1) WILD-TYPE  516  413
                        clus
vv                       DEL PEAK  8(2Q37.1) MUTATED
  BRAIN                                           54
  CENTRAL NERVOUS SYSTEM                          59
                        clus
vv                       DEL PEAK  8(2Q37.1) WILD-TYPE
  BRAIN                                            516
  CENTRAL NERVOUS SYSTEM                           413
[1] 2 2
[1] FALSE
D40V4, binary
                               cls
clus                              0   1
  DEL PEAK  8(2Q37.1) MUTATED    50  63
  DEL PEAK  8(2Q37.1) WILD-TYPE 380 549
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  8(2Q37.1) MUTATED     50   63
  DEL PEAK  8(2Q37.1) WILD-TYPE  380  549
        clus
vv       DEL PEAK  8(2Q37.1) MUTATED DEL PEAK  8(2Q37.1) WILD-TYPE
  FEMALE                          50                           380
  MALE                            63                           549
[1] 2 2
[1] FALSE
D40V5, continuous
                               vv
clus                            ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  DEL PEAK  8(2Q37.1) MUTATED            30                             2
  DEL PEAK  8(2Q37.1) WILD-TYPE         146                            25
                               vv
clus                            OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  DEL PEAK  8(2Q37.1) MUTATED                 18                11
  DEL PEAK  8(2Q37.1) WILD-TYPE              100               167
                               vv
clus                            TREATED PRIMARY GBM
  DEL PEAK  8(2Q37.1) MUTATED                     1
  DEL PEAK  8(2Q37.1) WILD-TYPE                  17
                               vv
clus                            UNTREATED PRIMARY (DE NOVO) GBM
  DEL PEAK  8(2Q37.1) MUTATED                                51
  DEL PEAK  8(2Q37.1) WILD-TYPE                             474
D40V6, multiclass
                                 clus
vv                                DEL PEAK  8(2Q37.1) MUTATED
  ASTROCYTOMA                                              30
  GLIOBLASTOMA MULTIFORME (GBM)                             2
  OLIGOASTROCYTOMA                                         18
  OLIGODENDROGLIOMA                                        11
  TREATED PRIMARY GBM                                       1
  UNTREATED PRIMARY (DE NOVO) GBM                          51
                                 clus
vv                                DEL PEAK  8(2Q37.1) WILD-TYPE
  ASTROCYTOMA                                               146
  GLIOBLASTOMA MULTIFORME (GBM)                              25
  OLIGOASTROCYTOMA                                          100
  OLIGODENDROGLIOMA                                         167
  TREATED PRIMARY GBM                                        17
  UNTREATED PRIMARY (DE NOVO) GBM                           474
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D40V7, binary
                               cls
clus                              0   1
  DEL PEAK  8(2Q37.1) MUTATED    46  67
  DEL PEAK  8(2Q37.1) WILD-TYPE 428 501
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  8(2Q37.1) MUTATED     46   67
  DEL PEAK  8(2Q37.1) WILD-TYPE  428  501
     clus
vv    DEL PEAK  8(2Q37.1) MUTATED DEL PEAK  8(2Q37.1) WILD-TYPE
  NO                           46                           428
  YES                          67                           501
[1] 2 2
[1] FALSE
                               vv
clus                            AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK  8(2Q37.1) MUTATED                                  0     2
  DEL PEAK  8(2Q37.1) WILD-TYPE                                1    19
                               vv
clus                            BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK  8(2Q37.1) MUTATED                           3   107
  DEL PEAK  8(2Q37.1) WILD-TYPE                        61   815
D40V8, multiclass
                                  clus
vv                                 DEL PEAK  8(2Q37.1) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                           0
  ASIAN                                                      2
  BLACK OR AFRICAN AMERICAN                                  3
  WHITE                                                    107
                                  clus
vv                                 DEL PEAK  8(2Q37.1) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                             1
  ASIAN                                                       19
  BLACK OR AFRICAN AMERICAN                                   61
  WHITE                                                      815
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D40V9, binary
                               cls
clus                              0   1
  DEL PEAK  8(2Q37.1) MUTATED     3 101
  DEL PEAK  8(2Q37.1) WILD-TYPE  27 790
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  8(2Q37.1) MUTATED      3  101
  DEL PEAK  8(2Q37.1) WILD-TYPE   27  790
                        clus
vv                       DEL PEAK  8(2Q37.1) MUTATED
  HISPANIC OR LATINO                               3
  NOT HISPANIC OR LATINO                         101
                        clus
vv                       DEL PEAK  8(2Q37.1) WILD-TYPE
  HISPANIC OR LATINO                                27
  NOT HISPANIC OR LATINO                           790
[1] 2 2
[1] FALSE

Clustering(41) Variable = DEL PEAK  9(3P21.31) MUTATION ANALYSIS
D41V1, survival
                                sevent
clus2                              0   1
  DEL PEAK  9(3P21.31) MUTATED    43  58
  DEL PEAK  9(3P21.31) WILD-TYPE 437 501
  DEL PEAK  9(3P21.31) MUTATED DEL PEAK  9(3P21.31) WILD-TYPE 
                           101                            938 
  DEL PEAK  9(3P21.31) MUTATED DEL PEAK  9(3P21.31) WILD-TYPE 
                            58                            501 
$`DEL PEAK  9(3P21.31) MUTATED`
TCGA-02-0014 TCGA-02-0015 TCGA-02-0055 TCGA-02-0083 TCGA-02-0084 TCGA-02-0106 
       82.59        20.61         2.50        22.72        12.62        11.67 
TCGA-02-0113 TCGA-02-0114 TCGA-02-0266 TCGA-02-0330 TCGA-02-0432 TCGA-02-2486 
       92.65        99.98        17.72        15.91        47.11        20.32 
TCGA-06-0128 TCGA-06-0152 TCGA-06-0166 TCGA-06-0216 TCGA-06-0221 TCGA-06-0237 
       22.72        12.33         5.85        24.16        19.82        13.64 
TCGA-06-0409 TCGA-06-0745 TCGA-06-0878 TCGA-06-1087 TCGA-06-5416 TCGA-06-5859 
       72.36         7.86         7.17         4.04         6.71         4.57 
TCGA-06-6390 TCGA-06-A7TL TCGA-08-0245 TCGA-08-0246 TCGA-08-0386 TCGA-08-0390 
        5.39         5.42        37.84         4.18        18.02        13.97 
TCGA-08-0516 TCGA-08-0517 TCGA-12-0776 TCGA-12-0826 TCGA-12-3653 TCGA-12-5295 
       19.59        58.68         9.73        27.78        14.53        14.93 
TCGA-14-0862 TCGA-14-1458 TCGA-14-1823 TCGA-14-3477 TCGA-15-1447 TCGA-15-1449 
        2.89         6.67        17.85         3.78        53.19        13.28 
TCGA-16-0849 TCGA-19-0955 TCGA-19-0964 TCGA-19-1388 TCGA-19-2625 TCGA-19-A6J4 
       26.07        11.77         3.39        12.95         4.08         3.98 
TCGA-26-1439 TCGA-26-1440 TCGA-28-1756 TCGA-28-5218 TCGA-28-5220 TCGA-32-1991 
       13.87         9.73         2.83         5.16        12.76        16.93 
TCGA-32-2615 TCGA-41-3393 TCGA-76-4929 TCGA-DB-5275 TCGA-DB-5277 TCGA-DH-A66D 
       15.95         4.44         3.65        47.93        50.86        27.81 
TCGA-DU-6396 TCGA-DU-6542 TCGA-DU-7010 TCGA-DU-7300 TCGA-DU-8161 TCGA-DU-8168 
       75.16         7.73        14.99        62.01        23.74        14.17 
TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A76R TCGA-DU-A7TA TCGA-E1-5304 TCGA-E1-5322 
        4.96         3.65        21.30        77.88        41.13       130.78 
TCGA-E1-A7YV TCGA-E1-A7YW TCGA-HT-7469 TCGA-HT-7473 TCGA-HT-7477 TCGA-HT-7478 
       32.45        36.82        11.54        16.54        24.26         6.38 
TCGA-HT-7482 TCGA-HT-7606 TCGA-HT-7690 TCGA-HT-8111 TCGA-HT-8564 TCGA-HT-A5R7 
      106.95        17.29         0.10         0.23        15.72        20.22 
TCGA-HT-A5RA TCGA-HT-A619 TCGA-IK-7675 TCGA-P5-A5F6 TCGA-QH-A6X9 TCGA-S9-A6WG 
       27.35        21.40        19.00         1.28         1.91        80.12 
TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A89V TCGA-TM-A84H TCGA-TM-A84J TCGA-TQ-A7RH 
        7.13        20.02        18.71        30.44        24.16        15.98 
TCGA-TQ-A7RW TCGA-VM-A8C8 TCGA-VV-A829 TCGA-WY-A859 TCGA-WY-A85E 
       26.99        43.04        37.05        39.88        20.81 

$`DEL PEAK  9(3P21.31) WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
       11.77         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 TCGA-02-0025 
       20.71        87.06        77.65        20.12        53.10        42.74 
TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 
       24.59        12.16        90.58         2.83        14.14         3.62 
TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 
       10.72        10.52        18.31         6.87        14.73         3.22 
TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 
       15.09        12.59         6.54        19.86         8.35         9.57 
TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 
        6.02        19.73        26.43        28.70        25.05         5.49 
TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 TCGA-02-0085 TCGA-02-0086 
       10.19        20.84        27.25        89.72        51.32         8.81 
TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0107 
       57.76        16.96         3.48        27.02        65.00        17.65 
TCGA-02-0111 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0269 
       23.18        15.65        48.95        16.54        16.93        10.75 
TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 
       14.47         3.98        13.87        14.20        15.95        12.23 
TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0332 TCGA-02-0333 
        9.90         7.73        10.62         7.33        25.71         4.37 
TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0440 
       25.12        10.59        12.39        14.50        10.55        11.34 
TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 
        9.27        16.21         3.35        16.80        12.92        15.32 
TCGA-02-2485 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 
       15.45         2.70         6.15        20.38        47.61         6.94 
TCGA-06-0127 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 
        3.98        33.67        12.95        25.35        14.30        26.70 
TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 
       24.23        11.90         0.20        10.29         2.20        11.74 
TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 
        2.33        20.09        17.79        10.09         8.61        19.46 
TCGA-06-0151 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 
       46.59        13.94        10.45         3.19        10.82         9.44 
TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0168 TCGA-06-0169 
       11.80         3.42        56.91        10.65        19.66         3.29 
TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 
       13.12         4.47         3.22         4.04        91.00         4.18 
TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 
       88.14        20.25         3.65        69.90        73.84        27.22 
TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 
       44.58        15.42        10.42        38.96         4.67         7.40 
TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 
        5.56         0.39         7.66         8.42         7.63         7.40 
TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0219 TCGA-06-0238 TCGA-06-0240 
       11.84         0.53        15.02         0.72        13.32        20.42 
TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0410 TCGA-06-0412 
       48.69        10.82         9.01         0.26         4.70         9.57 
TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 
        3.16        35.11        12.62         5.75         5.75         9.80 
TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0747 
        2.10        23.57        14.20        26.40        46.88         2.70 
TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0879 
        2.70         0.92        43.46        46.19         5.65        40.41 
TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1800 
       16.57        20.78        26.76        23.93         6.84        26.79 
TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-1806 TCGA-06-2557 
       11.84        15.32        13.61        33.90        15.32         1.08 
TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 
       12.49         4.93        17.65        12.56        30.64         5.95 
TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 
       16.64         5.98         4.37         0.43        31.50        11.74 
TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 
        3.55         8.35         4.54         8.81         8.98         8.55 
TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-6388 TCGA-06-6389 TCGA-06-6391 
        2.73         3.75         6.15         5.23         7.79         1.48 
TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 
      120.56         7.36         8.32        12.85         4.77         1.55 
TCGA-06-6700 TCGA-06-6701 TCGA-06-A5U0 TCGA-06-A5U1 TCGA-06-A6S0 TCGA-06-A6S1 
        4.77         4.96         4.70         1.87         3.12         2.56 
TCGA-06-A7TK TCGA-08-0244 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 
        5.39        22.68       115.86         1.74         8.42        25.71 
TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 
       12.16         9.80        29.23        65.33         1.28         8.42 
TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 
       17.95        24.56        31.10        37.58        22.29         3.39 
TCGA-08-0375 TCGA-08-0380 TCGA-08-0389 TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 
       12.23        14.93        15.35         0.72        12.56         4.27 
TCGA-08-0512 TCGA-08-0514 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 
       42.15        11.08        19.33        10.75         4.80         7.27 
TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 
       15.98        18.41         7.56        15.35        14.73        12.99 
TCGA-12-0619 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 
       34.92        10.45         7.59        94.78         0.10        38.17 
TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 
       25.97        26.66        12.13         3.65        20.38        28.41 
TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0778 TCGA-12-0780 
       15.06        53.85        43.23         7.63        14.93        14.86 
TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0827 
       91.76        24.79        18.48        10.62        23.51        38.76 
TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 
        8.94        20.58       127.59         5.82         7.59        33.21 
TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 
       21.73        15.98        12.23        15.85         9.11        14.53 
TCGA-12-1098 TCGA-12-1099 TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 
        3.98         4.14        15.65        25.68        14.73         6.77 
TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 
       59.77        44.02        26.93        15.22        10.95        12.69 
TCGA-12-3652 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 
       34.92         3.22         2.04        15.12        11.97         0.95 
TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 
        6.21        23.05         2.24        11.24        13.78         3.25 
TCGA-14-0813 TCGA-14-0817 TCGA-14-0865 TCGA-14-0866 TCGA-14-0867 TCGA-14-0871 
        1.35         5.39        16.50        26.33         2.04        28.93 
TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 
       15.95        19.30         0.79         1.38         1.12         3.75 
TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 
       32.05        58.78        23.11         7.10         1.15        30.18 
TCGA-14-1455 TCGA-14-1456 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 
        0.92        40.96        12.43         0.99         1.97        17.79 
TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-4157 
        7.63         5.88         7.17        17.49         7.96         3.42 
TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 TCGA-16-0846 TCGA-16-0848 TCGA-16-0850 
       13.78        50.53        19.10         3.91        17.59        16.37 
TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 
        4.31        29.03         4.57        10.29        14.01         9.14 
TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 
       21.24        13.97         6.41        21.90         8.61         0.66 
TCGA-19-0963 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1389 TCGA-19-1390 
       14.27        10.75         9.07         5.95         4.64        25.38 
TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 
        3.65         7.17        12.66         3.25         0.13         9.67 
TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2629 TCGA-19-2631 
        4.87         1.08         7.53         0.16        24.23         7.00 
TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 
        7.04         6.64        17.19         8.02        18.90         4.73 
TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 
       12.10         1.78        22.49        14.07        16.80        14.96 
TCGA-19-A60I TCGA-19-A6J5 TCGA-26-1438 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 
       17.79        28.54        10.03        31.33         7.13         9.37 
TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 
        9.40        14.86         5.49         8.88        18.97         1.58 
TCGA-26-6173 TCGA-26-6174 TCGA-26-A7UX TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 
        7.92         2.33        19.33         5.06        16.60         9.86 
TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 
       24.23        40.54        21.30        30.05        14.04        11.51 
TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 
       24.76        10.39        10.39        16.08         7.59         2.86 
TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 
       14.40        15.78         0.20         2.53         9.21         8.35 
TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1757 TCGA-28-2502 
        7.63         8.48         1.22         1.55         0.13         0.66 
TCGA-28-2506 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 
        6.74         4.77         7.30         5.26        14.93        11.28 
TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 
       17.88        14.53        11.77        31.27        23.44        11.01 
TCGA-28-5216 TCGA-28-5219 TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 
       13.64        22.68         5.42        15.39        21.07         0.49 
TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 
        0.10        15.85        19.50         1.18         4.67        12.69 
TCGA-32-1987 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2616 TCGA-32-2632 
       14.86        12.23        20.78        15.02         7.36         8.84 
TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 
       22.78        25.18        21.14         3.72        12.59        19.86 
TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 
       10.85        19.23         0.85        13.35         8.94         9.53 
TCGA-41-3392 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-4W-AA9S 
        0.99        11.84         0.20        15.12        12.46         4.14 
TCGA-4W-AA9T TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 
       14.76         3.45        20.91         4.34        14.33         8.22 
TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4931 TCGA-76-4934 
        7.50         4.80         4.54         3.09         9.17         2.53 
TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 
       10.78        16.70         3.29         2.70        11.38        17.06 
TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 
        8.35        20.98         4.83         5.03         0.23         9.27 
TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 TCGA-OX-A56R 
        7.73         7.79         1.61        17.72        26.30         5.92 
TCGA-RR-A6KA TCGA-RR-A6KC TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 
        6.28        20.55         4.70         7.69        43.89        18.15 
TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 
       10.62        64.64        40.18         0.10        21.01         9.96 
TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 
        6.38        17.69        23.84        17.95        12.43         8.48 
TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 
        7.56         8.02         7.40         6.61       122.73        81.96 
TCGA-DB-5274 TCGA-DB-5276 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 
       75.25        72.92        50.17        44.52        36.56        78.28 
TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE 
       46.42        18.84        30.21        46.72        39.78        37.45 
TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P 
       33.57        72.95        31.63        24.20        25.48        30.12 
TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W 
        5.98        31.40        27.45        27.81        29.23        14.40 
TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P 
       18.51        12.10        11.24        17.88        30.74        16.18 
TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 
       19.96        31.82        30.31        14.40         8.02        30.21 
TCGA-DH-A66B TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT 
       42.05        17.19        17.19        54.25        13.12        13.38 
TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 
        3.45        18.61        18.02        14.56        17.46         6.74 
TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 
       13.38         8.45         6.81       182.33        18.94        17.49 
TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6397 
       15.16       211.17        52.11        22.42        49.02        46.06 
TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 
       65.75         1.22        87.45         7.04        11.64       133.74 
TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-7006 
       19.89        16.83        94.52       114.08         7.96        11.47 
TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 
       62.96       156.23       138.28       105.21         6.54         8.84 
TCGA-DU-7014 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 
      117.40        90.77        30.67        26.30        10.36         7.96 
TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 
       94.32        18.94        44.02        25.91        60.30        23.31 
TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 
       41.98         2.76         5.10        14.60        20.68        21.40 
TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS 
       19.13        16.96        15.48        14.24        12.59        15.12 
TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 
        5.65        12.20         8.65         2.70        77.98         7.23 
TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A7T6 TCGA-DU-A7T8 
        5.98        11.41        26.76         7.13        17.98       124.50 
TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 
       42.31        23.51         7.50        44.42         0.56        50.14 
TCGA-E1-5303 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 
       67.46        79.99        57.93       134.27        78.21        95.57 
TCGA-E1-A7YO TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 
       75.02        32.35        14.33         0.23         0.20        47.77 
TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 
       25.48        34.36        36.82        18.77        14.93        24.99 
TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7638 TCGA-FG-7641 
       23.97        18.44        15.35        17.88        22.55        20.61 
TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 
       20.09        12.95        13.68        14.24        16.01        20.09 
TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW 
       14.96        22.52        32.61        38.27        10.72        18.38 
TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ 
       18.71        23.70        14.76        17.82        16.41        15.02 
TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 
       16.44        22.26        28.54        10.78        36.66        48.69 
TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 
       20.45        13.58         5.72        27.52         0.10         6.67 
TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 
       40.11         0.13         0.03         3.75        17.42         6.54 
TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 
       40.34        75.19        95.93       172.77         4.01         5.03 
TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7607 TCGA-HT-7608 
       29.85        23.18       122.47         4.57         3.16        22.06 
TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 
       45.99        56.09        57.60         0.23        14.27         0.16 
TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 
       16.24         0.76        44.68         6.05        42.74         0.10 
TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 
       31.69        14.96         0.10         2.96        17.52         6.90 
TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 
       14.53        39.48        19.23        39.09         0.23        50.63 
TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 
        0.49        23.61        37.15         0.33         0.13         3.68 
TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 
        5.33        35.47         3.72        11.28        31.43         1.64 
TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 
       16.24         9.40        63.55         0.10        37.87        33.01 
TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 
       12.23         6.25         0.10         0.46         2.50         5.56 
TCGA-HT-8110 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8563 TCGA-HT-A4DS TCGA-HT-A4DV 
       13.78        29.59        34.19        28.27         0.23        26.04 
TCGA-HT-A5R5 TCGA-HT-A5R9 TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 
        0.13         0.07         0.10         5.33         2.70        16.93 
TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H 
        1.81        16.14        16.83        17.52        17.65         2.43 
TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 
       10.52        15.35        11.05         0.10        29.92        19.89 
TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7493 TCGA-HW-7495 TCGA-HW-8319 
        8.32        19.23        40.18        35.90         4.31        21.70 
TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL 
       21.60        19.59        17.82        20.35        12.76        20.81 
TCGA-HW-A5KM TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW 
       20.71        42.77        14.40        14.40         0.23         6.71 
TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 
        1.64         2.37         2.30         4.11         5.88         7.63 
TCGA-P5-A5F4 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 
        0.76         0.16        10.42        13.25        11.64         0.20 
TCGA-P5-A731 TCGA-P5-A733 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X 
        9.01        13.61        15.16         2.53        12.62        15.85 
TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX 
       14.04        19.33        14.83        14.53        13.61        12.23 
TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 
        2.20         9.17        10.29        14.53        16.34        16.73 
TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML 
       16.50         5.03        11.08        12.99        88.83        94.03 
TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 
       32.65        59.38        30.87         5.46         9.90        28.08 
TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV 
        2.07        19.59        30.67        62.17        87.12        18.77 
TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 
       37.84        34.49        31.33        28.70        22.95        17.62 
TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA 
       23.64        32.61        16.08        98.24        95.93         5.85 
TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL 
      106.39        69.50        72.59        32.45        84.99        31.10 
TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ 
       19.86        15.91        18.61        15.16        14.07        36.13 
TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 
        7.92        22.32        23.51         8.19         2.04        17.03 
TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 
       15.06        13.12        28.37        13.02       169.84        10.39 
TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89Z TCGA-TM-A7C3 
       99.06        30.05        98.63        31.59        11.97        49.45 
TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C 
       48.33        49.32        34.78        48.39        24.92        16.18 
TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84I TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O 
       59.05        40.64        28.08        40.83        24.79        33.24 
TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-VM-A8C9 TCGA-VM-A8CA 
       25.38        18.61        14.93        23.80        30.08        13.51 
TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CH TCGA-VV-A86M TCGA-VW-A7QS 
        0.10         7.89        35.93        23.47        16.01        23.21 
TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A85A TCGA-WY-A85B 
        8.05        51.06        13.32        43.96        43.40        45.80 
TCGA-WY-A85C TCGA-WY-A85D 
       46.88        37.71 

  DEL PEAK  9(3P21.31) MUTATED DEL PEAK  9(3P21.31) WILD-TYPE 
                          0.10                           0.03 
  DEL PEAK  9(3P21.31) MUTATED DEL PEAK  9(3P21.31) WILD-TYPE 
                        130.78                         211.17 
  DEL PEAK  9(3P21.31) MUTATED DEL PEAK  9(3P21.31) WILD-TYPE 
                        16.540                         14.545 
[1] "0.1 - 130.8 (16.5)" "0.0 - 211.2 (14.5)"
[1] "hr=" "1"  
D41V2, continuous
D41V3, binary
                                cls
clus                               0   1
  DEL PEAK  9(3P21.31) MUTATED    57  45
  DEL PEAK  9(3P21.31) WILD-TYPE 513 427
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  9(3P21.31) MUTATED     57   45
  DEL PEAK  9(3P21.31) WILD-TYPE  513  427
                        clus
vv                       DEL PEAK  9(3P21.31) MUTATED
  BRAIN                                            57
  CENTRAL NERVOUS SYSTEM                           45
                        clus
vv                       DEL PEAK  9(3P21.31) WILD-TYPE
  BRAIN                                             513
  CENTRAL NERVOUS SYSTEM                            427
[1] 2 2
[1] FALSE
D41V4, binary
                                cls
clus                               0   1
  DEL PEAK  9(3P21.31) MUTATED    43  59
  DEL PEAK  9(3P21.31) WILD-TYPE 387 553
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  9(3P21.31) MUTATED     43   59
  DEL PEAK  9(3P21.31) WILD-TYPE  387  553
        clus
vv       DEL PEAK  9(3P21.31) MUTATED DEL PEAK  9(3P21.31) WILD-TYPE
  FEMALE                           43                            387
  MALE                             59                            553
[1] 2 2
[1] FALSE
D41V5, continuous
                                vv
clus                             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  DEL PEAK  9(3P21.31) MUTATED            16                             2
  DEL PEAK  9(3P21.31) WILD-TYPE         160                            25
                                vv
clus                             OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  DEL PEAK  9(3P21.31) MUTATED                 15                14
  DEL PEAK  9(3P21.31) WILD-TYPE              103               164
                                vv
clus                             TREATED PRIMARY GBM
  DEL PEAK  9(3P21.31) MUTATED                     3
  DEL PEAK  9(3P21.31) WILD-TYPE                  15
                                vv
clus                             UNTREATED PRIMARY (DE NOVO) GBM
  DEL PEAK  9(3P21.31) MUTATED                                52
  DEL PEAK  9(3P21.31) WILD-TYPE                             473
D41V6, multiclass
                                 clus
vv                                DEL PEAK  9(3P21.31) MUTATED
  ASTROCYTOMA                                               16
  GLIOBLASTOMA MULTIFORME (GBM)                              2
  OLIGOASTROCYTOMA                                          15
  OLIGODENDROGLIOMA                                         14
  TREATED PRIMARY GBM                                        3
  UNTREATED PRIMARY (DE NOVO) GBM                           52
                                 clus
vv                                DEL PEAK  9(3P21.31) WILD-TYPE
  ASTROCYTOMA                                                160
  GLIOBLASTOMA MULTIFORME (GBM)                               25
  OLIGOASTROCYTOMA                                           103
  OLIGODENDROGLIOMA                                          164
  TREATED PRIMARY GBM                                         15
  UNTREATED PRIMARY (DE NOVO) GBM                            473
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D41V7, binary
                                cls
clus                               0   1
  DEL PEAK  9(3P21.31) MUTATED    55  47
  DEL PEAK  9(3P21.31) WILD-TYPE 419 521
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  9(3P21.31) MUTATED     55   47
  DEL PEAK  9(3P21.31) WILD-TYPE  419  521
     clus
vv    DEL PEAK  9(3P21.31) MUTATED DEL PEAK  9(3P21.31) WILD-TYPE
  NO                            55                            419
  YES                           47                            521
[1] 2 2
[1] FALSE
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK  9(3P21.31) MUTATED                                  0     2
  DEL PEAK  9(3P21.31) WILD-TYPE                                1    19
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK  9(3P21.31) MUTATED                           7    91
  DEL PEAK  9(3P21.31) WILD-TYPE                        57   831
D41V8, multiclass
                                  clus
vv                                 DEL PEAK  9(3P21.31) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            0
  ASIAN                                                       2
  BLACK OR AFRICAN AMERICAN                                   7
  WHITE                                                      91
                                  clus
vv                                 DEL PEAK  9(3P21.31) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              1
  ASIAN                                                        19
  BLACK OR AFRICAN AMERICAN                                    57
  WHITE                                                       831
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D41V9, binary
                                cls
clus                               0   1
  DEL PEAK  9(3P21.31) MUTATED     7  85
  DEL PEAK  9(3P21.31) WILD-TYPE  23 806
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  9(3P21.31) MUTATED      7   85
  DEL PEAK  9(3P21.31) WILD-TYPE   23  806
                        clus
vv                       DEL PEAK  9(3P21.31) MUTATED
  HISPANIC OR LATINO                                7
  NOT HISPANIC OR LATINO                           85
                        clus
vv                       DEL PEAK  9(3P21.31) WILD-TYPE
  HISPANIC OR LATINO                                 23
  NOT HISPANIC OR LATINO                            806
[1] 2 2
[1] FALSE

Clustering(42) Variable = DEL PEAK 10(3Q13.31) MUTATION ANALYSIS
D42V1, survival
                                sevent
clus2                              0   1
  DEL PEAK 10(3Q13.31) MUTATED    30  61
  DEL PEAK 10(3Q13.31) WILD-TYPE 450 498
  DEL PEAK 10(3Q13.31) MUTATED DEL PEAK 10(3Q13.31) WILD-TYPE 
                            91                            948 
  DEL PEAK 10(3Q13.31) MUTATED DEL PEAK 10(3Q13.31) WILD-TYPE 
                            61                            498 
$`DEL PEAK 10(3Q13.31) MUTATED`
TCGA-02-0001 TCGA-02-0021 TCGA-02-0054 TCGA-02-0055 TCGA-02-0060 TCGA-02-0069 
       11.77        77.65         6.54         2.50         6.02        28.70 
TCGA-02-0084 TCGA-02-0113 TCGA-02-0330 TCGA-02-0332 TCGA-02-2466 TCGA-06-0128 
       12.62        92.65        15.91        25.71        16.80        22.72 
TCGA-06-0152 TCGA-06-0182 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 
       12.33         3.65        15.02        24.16         0.72        19.82 
TCGA-06-0409 TCGA-06-1806 TCGA-06-2569 TCGA-06-5859 TCGA-06-6389 TCGA-06-6390 
       72.36        15.32         0.43         4.57         7.79         5.39 
TCGA-06-A5U1 TCGA-08-0245 TCGA-08-0246 TCGA-08-0386 TCGA-08-0390 TCGA-08-0516 
        1.87        37.84         4.18        18.02        13.97        19.59 
TCGA-12-0691 TCGA-12-0773 TCGA-12-0776 TCGA-12-0826 TCGA-12-1089 TCGA-12-1093 
       12.13        43.23         9.73        27.78         5.82        15.98 
TCGA-12-1600 TCGA-12-3651 TCGA-12-3653 TCGA-14-0812 TCGA-14-0871 TCGA-14-1458 
       14.73        12.69        14.53         3.25        28.93         6.67 
TCGA-14-1823 TCGA-15-1447 TCGA-15-1449 TCGA-19-1388 TCGA-19-2621 TCGA-19-A6J4 
       17.85        53.19        13.28        12.95         1.08         3.98 
TCGA-26-1439 TCGA-28-1752 TCGA-28-1757 TCGA-28-5220 TCGA-32-1973 TCGA-32-2615 
       13.87         8.48         0.13        12.76        21.07        15.95 
TCGA-76-4929 TCGA-76-6280 TCGA-CS-6666 TCGA-DB-5277 TCGA-DB-5281 TCGA-DU-6402 
        3.65        11.38         8.48        50.86        78.28         7.04 
TCGA-DU-6542 TCGA-DU-7007 TCGA-DU-7014 TCGA-DU-7300 TCGA-DU-8167 TCGA-DU-A5TU 
        7.73        62.96       117.40        62.01        15.48         3.65 
TCGA-DU-A5TW TCGA-DU-A76K TCGA-DU-A76O TCGA-DU-A76R TCGA-E1-5302 TCGA-E1-A7YV 
        5.65        11.41         7.13        21.30        50.14        32.45 
TCGA-E1-A7Z6 TCGA-FG-5963 TCGA-HT-7469 TCGA-HT-7603 TCGA-HT-7606 TCGA-HT-8111 
       32.35        25.48        11.54        23.18        17.29         0.23 
TCGA-HT-8564 TCGA-HT-A619 TCGA-HW-7489 TCGA-HW-8321 TCGA-IK-7675 TCGA-P5-A5F2 
       15.72        21.40         8.32        19.59        19.00         7.63 
TCGA-P5-A5F6 TCGA-P5-A733 TCGA-S9-A6TV TCGA-TM-A84J TCGA-VM-A8C8 TCGA-WY-A85C 
        1.28        13.61        18.77        24.16        43.04        46.88 
TCGA-WY-A85E 
       20.81 

$`DEL PEAK 10(3Q13.31) WILD-TYPE`
TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 TCGA-02-0011 
        4.73        18.35        23.18        10.59        35.41        20.71 
TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0023 TCGA-02-0024 TCGA-02-0025 
       82.59        20.61        87.06        20.12        53.10        42.74 
TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 
       24.59        12.16        90.58         2.83        14.14         3.62 
TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 
       10.72        10.52        18.31         6.87        14.73         3.22 
TCGA-02-0051 TCGA-02-0052 TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 TCGA-02-0064 
       15.09        12.59        19.86         8.35         9.57        19.73 
TCGA-02-0068 TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 
       26.43        25.05         5.49        10.19        20.84        27.25 
TCGA-02-0080 TCGA-02-0083 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 
       89.72        22.72        51.32         8.81        57.76        16.96 
TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 
        3.48        27.02        65.00        11.67        17.65        23.18 
TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 
       99.98        15.65        48.95        16.54        16.93        17.72 
TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 
       10.75        14.47         3.98        13.87        14.20        15.95 
TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0333 
       12.23         9.90         7.73        10.62         7.33         4.37 
TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 
       25.12        10.59        12.39        14.50        10.55        47.11 
TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2470 TCGA-02-2483 
       11.34         9.27        16.21         3.35        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 
       15.45        20.32         2.70         6.15        20.38        47.61 
TCGA-06-0126 TCGA-06-0127 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 
        6.94         3.98        33.67        12.95        25.35        14.30 
TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 
       26.70        24.23        11.90         0.20        10.29         2.20 
TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 
       11.74         2.33        20.09        17.79        10.09         8.61 
TCGA-06-0150 TCGA-06-0151 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 
       19.46        46.59        13.94        10.45         3.19        10.82 
TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 
        9.44        11.80         3.42        56.91        10.65         5.85 
TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 
       19.66         3.29        13.12         4.47         3.22         4.04 
TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0184 TCGA-06-0185 
       91.00         4.18        88.14        20.25        69.90        73.84 
TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 
       27.22        44.58        15.42        10.42        38.96         4.67 
TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 
        7.40         5.56         0.39         7.66         8.42         7.63 
TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 
        7.40        11.84         0.53        13.64        13.32        20.42 
TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0410 TCGA-06-0412 
       48.69        10.82         9.01         0.26         4.70         9.57 
TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 
        3.16        35.11        12.62         5.75         5.75         9.80 
TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 
        2.10        23.57        14.20        26.40        46.88         7.86 
TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 
        2.70         2.70         0.92        43.46        46.19         5.65 
TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 
        7.17        40.41        16.57        20.78        26.76        23.93 
TCGA-06-1086 TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 
        6.84         4.04        26.79        11.84        15.32        13.61 
TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 
       33.90         1.08        12.49         4.93        17.65        12.56 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2570 
       30.64         5.95        16.64         5.98         4.37        31.50 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 
       11.74         3.55         8.35         4.54         8.81         8.98 
TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-6388 
        8.55         6.71         2.73         3.75         6.15         5.23 
TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 
        1.48       120.56         7.36         8.32        12.85         4.77 
TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-06-A5U0 TCGA-06-A6S0 TCGA-06-A6S1 
        1.55         4.77         4.96         4.70         3.12         2.56 
TCGA-06-A7TK TCGA-06-A7TL TCGA-08-0244 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 
        5.39         5.42        22.68       115.86         1.74         8.42 
TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 
       25.71        12.16         9.80        29.23        65.33         1.28 
TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 
        8.42        17.95        24.56        31.10        37.58        22.29 
TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0389 TCGA-08-0392 TCGA-08-0509 
        3.39        12.23        14.93        15.35         0.72        12.56 
TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 
        4.27        42.15        11.08        58.68        19.33        10.75 
TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 
        4.80         7.27        15.98        18.41         7.56        15.35 
TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 
       14.73        12.99        34.92        10.45         7.59        94.78 
TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0692 TCGA-12-0703 
        0.10        38.17        25.97        26.66         3.65        20.38 
TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0775 TCGA-12-0778 TCGA-12-0780 
       28.41        15.06        53.85         7.63        14.93        14.86 
TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0827 
       91.76        24.79        18.48        10.62        23.51        38.76 
TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 
        8.94        20.58       127.59         7.59        33.21        21.73 
TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 
       12.23        15.85         9.11        14.53         3.98         4.14 
TCGA-12-1598 TCGA-12-1599 TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 
       15.65        25.68         6.77        59.77        44.02        26.93 
TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 
       15.22        10.95        34.92        14.93         3.22         2.04 
TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 
       15.12        11.97         0.95         6.21        23.05         2.24 
TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0865 
       11.24        13.78         1.35         5.39         2.89        16.50 
TCGA-14-0866 TCGA-14-0867 TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 
       26.33         2.04        15.95        19.30         0.79         1.38 
TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 
        1.12         3.75        32.05        58.78        23.11         7.10 
TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1459 TCGA-14-1794 
        1.15        30.18         0.92        40.96        12.43         0.99 
TCGA-14-1795 TCGA-14-1821 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 
        1.97        17.79         7.63         5.88         7.17        17.49 
TCGA-14-2555 TCGA-14-3477 TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 
        7.96         3.78         3.42        13.78        50.53        19.10 
TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 
        3.91        17.59        26.07        16.37         4.31        29.03 
TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 
        4.57        10.29        14.01         9.14        21.24        13.97 
TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 
        6.41        11.77        21.90         8.61         0.66        14.27 
TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1389 TCGA-19-1390 
        3.39        10.75         9.07         5.95         4.64        25.38 
TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 
        3.65         7.17        12.66         3.25         0.13         9.67 
TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 
        4.87         7.53         0.16         4.08        24.23         7.00 
TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 
        7.04         6.64        17.19         8.02        18.90         4.73 
TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 
       12.10         1.78        22.49        14.07        16.80        14.96 
TCGA-19-A60I TCGA-19-A6J5 TCGA-26-1438 TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 
       17.79        28.54        10.03         9.73        31.33         7.13 
TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 
        9.37         9.40        14.86         5.49         8.88        18.97 
TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-26-A7UX TCGA-27-1830 TCGA-27-1831 
        1.58         7.92         2.33        19.33         5.06        16.60 
TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 
        9.86        24.23        40.54        21.30        30.05        14.04 
TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 
       11.51        24.76        10.39        10.39        16.08         7.59 
TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 
        2.86        14.40        15.78         0.20         2.53         9.21 
TCGA-28-1750 TCGA-28-1751 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-2502 
        8.35         7.63         1.22         1.55         2.83         0.66 
TCGA-28-2506 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 
        6.74         4.77         7.30         5.26        14.93        11.28 
TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 
       17.88        14.53        11.77        31.27        23.44        11.01 
TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-6450 TCGA-32-1970 TCGA-32-1976 
       13.64         5.16        22.68         5.42        15.39         0.49 
TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 
        0.10        15.85        19.50         1.18         4.67        12.69 
TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2616 
       14.86        16.93        12.23        20.78        15.02         7.36 
TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4210 TCGA-32-4211 
        8.84        22.78        25.18        21.14         3.72        12.59 
TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 
       19.86        10.85        19.23         0.85        13.35         8.94 
TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 
        9.53         0.99         4.44        11.84         0.20        15.12 
TCGA-41-6646 TCGA-4W-AA9S TCGA-4W-AA9T TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 
       12.46         4.14        14.76         3.45        20.91         4.34 
TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 
       14.33         8.22         7.50         4.80         4.54         3.09 
TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 
        9.17         2.53        10.78        16.70         3.29         2.70 
TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 
       17.06         8.35        20.98         4.83         5.03         0.23 
TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        9.27         7.73         7.79         1.61        17.72        26.30 
TCGA-OX-A56R TCGA-RR-A6KA TCGA-RR-A6KC TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 
        5.92         6.28        20.55         4.70         7.69        43.89 
TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 
       18.15        10.62        64.64        40.18         0.10        21.01 
TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 
        9.96         6.38        17.69        23.84        17.95        12.43 
TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 
        7.56         8.02         7.40         6.61       122.73        81.96 
TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 
       75.25        47.93        72.92        50.17        44.52        36.56 
TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE 
       46.42        18.84        30.21        46.72        39.78        37.45 
TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P 
       33.57        72.95        31.63        24.20        25.48        30.12 
TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W 
        5.98        31.40        27.45        27.81        29.23        14.40 
TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P 
       18.51        12.10        11.24        17.88        30.74        16.18 
TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 
       19.96        31.82        30.31        14.40         8.02        30.21 
TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US 
       42.05        27.81        17.19        17.19        54.25        13.12 
TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 
       13.38         3.45        18.61        18.02        14.56        17.46 
TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 
        6.74        13.38         8.45         6.81       182.33        18.94 
TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 
       17.49        15.16       211.17        52.11        22.42        49.02 
TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6403 
       75.16        46.06        65.75         1.22        87.45        11.64 
TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 
      133.74        19.89        16.83        94.52       114.08         7.96 
TCGA-DU-7006 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 
       11.47       156.23       138.28        14.99       105.21         6.54 
TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 
        8.84        90.77        30.67        26.30        10.36         7.96 
TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 
       94.32        18.94        44.02        25.91        60.30        23.31 
TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 
       41.98         2.76         5.10        23.74        14.60        20.68 
TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR 
       21.40        19.13        16.96        14.17        14.24        12.59 
TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 
       15.12         4.96        12.20         8.65         2.70        77.98 
TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76L TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA 
        7.23         5.98        26.76        17.98       124.50        77.88 
TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5303 
       42.31        23.51         7.50        44.42         0.56        67.46 
TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 
       41.13        79.99        57.93       134.27        78.21        95.57 
TCGA-E1-5322 TCGA-E1-A7YO TCGA-E1-A7YW TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 
      130.78        75.02        36.82        14.33         0.23         0.20 
TCGA-FG-5962 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 
       47.77        34.36        36.82        18.77        14.93        24.99 
TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7638 TCGA-FG-7641 
       23.97        18.44        15.35        17.88        22.55        20.61 
TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 
       20.09        12.95        13.68        14.24        16.01        20.09 
TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW 
       14.96        22.52        32.61        38.27        10.72        18.38 
TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ 
       18.71        23.70        14.76        17.82        16.41        15.02 
TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 
       16.44        22.26        28.54        10.78        36.66        48.69 
TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 
       20.45        13.58         5.72        27.52         0.10         6.67 
TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 
       40.11         0.13         0.03        16.54         3.75        17.42 
TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 
        6.54        24.26         6.38        40.34        75.19        95.93 
TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7604 
      106.95       172.77         4.01         5.03        29.85       122.47 
TCGA-HT-7605 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 
        4.57         3.16        22.06        45.99        56.09        57.60 
TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 
        0.23        14.27         0.16        16.24         0.76        44.68 
TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 
        6.05        42.74         0.10        31.69        14.96         0.10 
TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 
        0.10         2.96        17.52         6.90        14.53        39.48 
TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 
       19.23        39.09         0.23        50.63         0.49        23.61 
TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 
       37.15         0.33         0.13         3.68         5.33        35.47 
TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 
        3.72        11.28        31.43         1.64        16.24         9.40 
TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 
       63.55         0.10        37.87        33.01        12.23         6.25 
TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8113 
        0.10         0.46         2.50         5.56        13.78        29.59 
TCGA-HT-8114 TCGA-HT-8563 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 
       34.19        28.27         0.23        26.04         0.13        20.22 
TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 
        0.07        27.35         0.10         5.33         2.70        16.93 
TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H 
        1.81        16.14        16.83        17.52        17.65         2.43 
TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 
       10.52        15.35        11.05         0.10        29.92        19.89 
TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7493 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 
       19.23        40.18        35.90         4.31        21.70        21.60 
TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-8125 
       17.82        20.35        12.76        20.81        20.71        42.77 
TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY 
       14.40        14.40         0.23         6.71         1.64         2.37 
TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F4 TCGA-P5-A72U TCGA-P5-A72W 
        2.30         4.11         5.88         0.76         0.16        10.42 
TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-QH-A65R TCGA-QH-A65S 
       13.25        11.64         0.20         9.01        15.16         2.53 
TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV 
       12.62        15.85        14.04        19.33        14.83        14.53 
TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 
       13.61        12.23         2.20         9.17        10.29        14.53 
TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X 
       16.34        16.73         1.91        16.50         5.03        11.08 
TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X 
       12.99        88.83        94.03        32.65        59.38        30.87 
TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 
        5.46         9.90        28.08         2.07        19.59        30.67 
TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ 
       62.17        87.12        37.84        34.49        31.33        28.70 
TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 
       22.95        17.62        23.64        32.61        16.08        98.24 
TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG 
       95.93         5.85       106.39        69.50        72.59        80.12 
TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO 
       32.45        84.99        31.10        19.86        15.91        18.61 
TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY 
       15.16        14.07        36.13         7.92        22.32        23.51 
TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW 
        7.13        20.02         8.19         2.04        17.03        15.06 
TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 
       13.12        28.37        13.02       169.84        10.39        99.06 
TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 
       30.05        98.63        31.59        18.71        11.97        49.45 
TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C 
       48.33        49.32        34.78        48.39        24.92        16.18 
TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84L TCGA-TM-A84M 
       59.05        40.64        30.44        28.08        40.83        24.79 
TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RH 
       33.24        25.38        18.61        14.93        23.80        15.98 
TCGA-TQ-A7RW TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE 
       26.99        30.08        13.51         0.10         7.89        35.93 
TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 
       23.47        37.05        16.01        23.21         8.05        51.06 
TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85D 
       13.32        43.96        39.88        43.40        45.80        37.71 

  DEL PEAK 10(3Q13.31) MUTATED DEL PEAK 10(3Q13.31) WILD-TYPE 
                          0.13                           0.03 
  DEL PEAK 10(3Q13.31) MUTATED DEL PEAK 10(3Q13.31) WILD-TYPE 
                        117.40                         211.17 
  DEL PEAK 10(3Q13.31) MUTATED DEL PEAK 10(3Q13.31) WILD-TYPE 
                        14.730                         14.795 
[1] "0.1 - 117.4 (14.7)" "0.0 - 211.2 (14.8)"
[1] "hr=" "1.3"
D42V2, continuous
D42V3, binary
                                cls
clus                               0   1
  DEL PEAK 10(3Q13.31) MUTATED    56  35
  DEL PEAK 10(3Q13.31) WILD-TYPE 514 437
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 10(3Q13.31) MUTATED     56   35
  DEL PEAK 10(3Q13.31) WILD-TYPE  514  437
                        clus
vv                       DEL PEAK 10(3Q13.31) MUTATED
  BRAIN                                            56
  CENTRAL NERVOUS SYSTEM                           35
                        clus
vv                       DEL PEAK 10(3Q13.31) WILD-TYPE
  BRAIN                                             514
  CENTRAL NERVOUS SYSTEM                            437
[1] 2 2
[1] FALSE
D42V4, binary
                                cls
clus                               0   1
  DEL PEAK 10(3Q13.31) MUTATED    36  55
  DEL PEAK 10(3Q13.31) WILD-TYPE 394 557
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 10(3Q13.31) MUTATED     36   55
  DEL PEAK 10(3Q13.31) WILD-TYPE  394  557
        clus
vv       DEL PEAK 10(3Q13.31) MUTATED DEL PEAK 10(3Q13.31) WILD-TYPE
  FEMALE                           36                            394
  MALE                             55                            557
[1] 2 2
[1] FALSE
D42V5, continuous
                                vv
clus                             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  DEL PEAK 10(3Q13.31) MUTATED            16                             3
  DEL PEAK 10(3Q13.31) WILD-TYPE         160                            24
                                vv
clus                             OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  DEL PEAK 10(3Q13.31) MUTATED                  8                11
  DEL PEAK 10(3Q13.31) WILD-TYPE              110               167
                                vv
clus                             TREATED PRIMARY GBM
  DEL PEAK 10(3Q13.31) MUTATED                     2
  DEL PEAK 10(3Q13.31) WILD-TYPE                  16
                                vv
clus                             UNTREATED PRIMARY (DE NOVO) GBM
  DEL PEAK 10(3Q13.31) MUTATED                                51
  DEL PEAK 10(3Q13.31) WILD-TYPE                             474
D42V6, multiclass
                                 clus
vv                                DEL PEAK 10(3Q13.31) MUTATED
  ASTROCYTOMA                                               16
  GLIOBLASTOMA MULTIFORME (GBM)                              3
  OLIGOASTROCYTOMA                                           8
  OLIGODENDROGLIOMA                                         11
  TREATED PRIMARY GBM                                        2
  UNTREATED PRIMARY (DE NOVO) GBM                           51
                                 clus
vv                                DEL PEAK 10(3Q13.31) WILD-TYPE
  ASTROCYTOMA                                                160
  GLIOBLASTOMA MULTIFORME (GBM)                               24
  OLIGOASTROCYTOMA                                           110
  OLIGODENDROGLIOMA                                          167
  TREATED PRIMARY GBM                                         16
  UNTREATED PRIMARY (DE NOVO) GBM                            474
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D42V7, binary
                                cls
clus                               0   1
  DEL PEAK 10(3Q13.31) MUTATED    51  40
  DEL PEAK 10(3Q13.31) WILD-TYPE 423 528
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 10(3Q13.31) MUTATED     51   40
  DEL PEAK 10(3Q13.31) WILD-TYPE  423  528
     clus
vv    DEL PEAK 10(3Q13.31) MUTATED DEL PEAK 10(3Q13.31) WILD-TYPE
  NO                            51                            423
  YES                           40                            528
[1] 2 2
[1] FALSE
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 10(3Q13.31) MUTATED                                  0     3
  DEL PEAK 10(3Q13.31) WILD-TYPE                                1    18
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 10(3Q13.31) MUTATED                           7    81
  DEL PEAK 10(3Q13.31) WILD-TYPE                        57   841
D42V8, multiclass
                                  clus
vv                                 DEL PEAK 10(3Q13.31) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            0
  ASIAN                                                       3
  BLACK OR AFRICAN AMERICAN                                   7
  WHITE                                                      81
                                  clus
vv                                 DEL PEAK 10(3Q13.31) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              1
  ASIAN                                                        18
  BLACK OR AFRICAN AMERICAN                                    57
  WHITE                                                       841
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D42V9, binary
                                cls
clus                               0   1
  DEL PEAK 10(3Q13.31) MUTATED     4  77
  DEL PEAK 10(3Q13.31) WILD-TYPE  26 814
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 10(3Q13.31) MUTATED      4   77
  DEL PEAK 10(3Q13.31) WILD-TYPE   26  814
                        clus
vv                       DEL PEAK 10(3Q13.31) MUTATED
  HISPANIC OR LATINO                                4
  NOT HISPANIC OR LATINO                           77
                        clus
vv                       DEL PEAK 10(3Q13.31) WILD-TYPE
  HISPANIC OR LATINO                                 26
  NOT HISPANIC OR LATINO                            814
[1] 2 2
[1] FALSE

Clustering(43) Variable = DEL PEAK 11(3Q29) MUTATION ANALYSIS
D43V1, survival
                             sevent
clus2                           0   1
  DEL PEAK 11(3Q29) MUTATED    32  66
  DEL PEAK 11(3Q29) WILD-TYPE 448 493
  DEL PEAK 11(3Q29) MUTATED DEL PEAK 11(3Q29) WILD-TYPE 
                         98                         941 
  DEL PEAK 11(3Q29) MUTATED DEL PEAK 11(3Q29) WILD-TYPE 
                         66                         493 
$`DEL PEAK 11(3Q29) MUTATED`
TCGA-02-0010 TCGA-02-0026 TCGA-02-0055 TCGA-02-0084 TCGA-02-0113 TCGA-02-0330 
       35.41        24.59         2.50        12.62        92.65        15.91 
TCGA-02-0332 TCGA-06-0128 TCGA-06-0145 TCGA-06-0152 TCGA-06-0158 TCGA-06-0175 
       25.71        22.72         2.33        12.33        10.82         4.04 
TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 TCGA-06-0409 TCGA-06-1801 
       15.02        24.16         0.72        19.82        72.36        11.84 
TCGA-06-1806 TCGA-06-2563 TCGA-06-2565 TCGA-06-5415 TCGA-06-5859 TCGA-06-6390 
       15.32        30.64        16.64         8.55         4.57         5.39 
TCGA-06-6693 TCGA-08-0246 TCGA-08-0351 TCGA-08-0386 TCGA-08-0392 TCGA-08-0516 
      120.56         4.18        65.33        18.02         0.72        19.59 
TCGA-08-0531 TCGA-12-0662 TCGA-12-0776 TCGA-12-0826 TCGA-12-0829 TCGA-12-1098 
        7.56        38.17         9.73        27.78        20.58         3.98 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-14-0812 TCGA-14-0871 TCGA-14-1821 
       34.92        14.53        14.93         3.25        28.93        17.79 
TCGA-14-1823 TCGA-14-4157 TCGA-15-1447 TCGA-15-1449 TCGA-19-1388 TCGA-19-1390 
       17.85         3.42        53.19        13.28        12.95        25.38 
TCGA-19-5956 TCGA-19-A6J4 TCGA-26-1439 TCGA-27-1830 TCGA-27-2521 TCGA-27-2523 
       22.49         3.98        13.87         5.06        10.39        16.08 
TCGA-27-2528 TCGA-28-5220 TCGA-32-2615 TCGA-41-2575 TCGA-74-6581 TCGA-74-6584 
       15.78        12.76        15.95         9.53         8.22         7.50 
TCGA-76-4929 TCGA-CS-6666 TCGA-DB-5277 TCGA-DB-5281 TCGA-DH-A7UU TCGA-DU-6395 
        3.65         8.48        50.86        78.28         3.45        49.02 
TCGA-DU-7007 TCGA-DU-7014 TCGA-DU-7298 TCGA-DU-7300 TCGA-DU-8161 TCGA-DU-8167 
       62.96       117.40        18.94        62.01        23.74        15.48 
TCGA-DU-A5TU TCGA-DU-A76R TCGA-E1-5302 TCGA-E1-A7YV TCGA-FG-5963 TCGA-FG-6691 
        3.65        21.30        50.14        32.45        25.48        23.97 
TCGA-HT-7470 TCGA-HT-7472 TCGA-HT-7477 TCGA-HT-7604 TCGA-HT-7688 TCGA-HT-8111 
       40.11         0.03        24.26       122.47        31.69         0.23 
TCGA-HT-8564 TCGA-HT-A619 TCGA-IK-7675 TCGA-P5-A5F6 TCGA-P5-A733 TCGA-QH-A65S 
       15.72        21.40        19.00         1.28        13.61         2.53 
TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A89Z TCGA-TM-A84B TCGA-TM-A84J TCGA-VM-A8C8 
        7.13        20.02        11.97        24.92        24.16        43.04 
TCGA-WY-A859 TCGA-WY-A85C 
       39.88        46.88 

$`DEL PEAK 11(3Q29) WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0011 
       11.77         4.73        18.35        23.18        10.59        20.71 
TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 
       82.59        20.61        87.06        77.65        20.12        53.10 
TCGA-02-0025 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 
       42.74        12.16        90.58         2.83        14.14         3.62 
TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 
       10.72        10.52        18.31         6.87        14.73         3.22 
TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 
       15.09        12.59         6.54        19.86         8.35         9.57 
TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 
        6.02        19.73        26.43        28.70        25.05         5.49 
TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0085 
       10.19        20.84        27.25        89.72        22.72        51.32 
TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 
        8.81        57.76        16.96         3.48        27.02        65.00 
TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 
       11.67        17.65        23.18        99.98        15.65        48.95 
TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 
       16.54        16.93        17.72        10.75        14.47         3.98 
TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 
       13.87        14.20        15.95        12.23         9.90         7.73 
TCGA-02-0325 TCGA-02-0326 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 
       10.62         7.33         4.37        25.12        10.59        12.39 
TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 
       14.50        10.55        47.11        11.34         9.27        16.21 
TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 
        3.35        16.80        12.92        15.32        15.45        20.32 
TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 
        2.70         6.15        20.38        47.61         6.94         3.98 
TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 
       33.67        12.95        25.35        14.30        26.70        24.23 
TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0146 
       11.90         0.20        10.29         2.20        11.74        20.09 
TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0154 
       17.79        10.09         8.61        19.46        46.59        13.94 
TCGA-06-0155 TCGA-06-0157 TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 
       10.45         3.19         9.44        11.80         3.42        56.91 
TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 
       10.65         5.85        19.66         3.29        13.12         4.47 
TCGA-06-0174 TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 
        3.22        91.00         4.18        88.14        20.25         3.65 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 
       69.90        73.84        27.22        44.58        15.42        10.42 
TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 
       38.96         4.67         7.40         5.56         0.39         7.66 
TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0237 
        8.42         7.63         7.40        11.84         0.53        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 
       13.32        20.42        48.69        10.82         9.01         0.26 
TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 
        4.70         9.57         3.16        35.11        12.62         5.75 
TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 
        5.75         9.80         2.10        23.57        14.20        26.40 
TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 
       46.88         7.86         2.70         2.70         0.92        43.46 
TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 
       46.19         5.65         7.17        40.41        16.57        20.78 
TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1087 TCGA-06-1800 TCGA-06-1802 
       26.76        23.93         6.84         4.04        26.79        15.32 
TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.61        33.90         1.08        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2564 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 
       12.56         5.95         5.98         4.37         0.43        31.50 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 
       11.74         3.55         8.35         4.54         8.81         8.98 
TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-6388 TCGA-06-6389 
        6.71         2.73         3.75         6.15         5.23         7.79 
TCGA-06-6391 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 
        1.48         7.36         8.32        12.85         4.77         1.55 
TCGA-06-6700 TCGA-06-6701 TCGA-06-A5U0 TCGA-06-A5U1 TCGA-06-A6S0 TCGA-06-A6S1 
        4.77         4.96         4.70         1.87         3.12         2.56 
TCGA-06-A7TK TCGA-06-A7TL TCGA-08-0244 TCGA-08-0245 TCGA-08-0344 TCGA-08-0345 
        5.39         5.42        22.68        37.84       115.86         1.74 
TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0352 
        8.42        25.71        12.16         9.80        29.23         1.28 
TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 
        8.42        17.95        24.56        31.10        37.58        22.29 
TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0389 TCGA-08-0390 TCGA-08-0509 
        3.39        12.23        14.93        15.35        13.97        12.56 
TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 
        4.27        42.15        11.08        58.68        19.33        10.75 
TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-12-0615 TCGA-12-0616 
        4.80         7.27        15.98        18.41        15.35        14.73 
TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 
       12.99        34.92        10.45         7.59        94.78         0.10 
TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 
       25.97        26.66        12.13         3.65        20.38        28.41 
TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0778 TCGA-12-0780 
       15.06        53.85        43.23         7.63        14.93        14.86 
TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0827 
       91.76        24.79        18.48        10.62        23.51        38.76 
TCGA-12-0828 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 
        8.94       127.59         5.82         7.59        33.21        21.73 
TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1099 
       15.98        12.23        15.85         9.11        14.53         4.14 
TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 
       15.65        25.68        14.73         6.77        59.77        44.02 
TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-5299 TCGA-12-5301 
       26.93        15.22        10.95        12.69         3.22         2.04 
TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 
       15.12        11.97         0.95         6.21        23.05         2.24 
TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0865 
       11.24        13.78         1.35         5.39         2.89        16.50 
TCGA-14-0866 TCGA-14-0867 TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 
       26.33         2.04        15.95        19.30         0.79         1.38 
TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 
        1.12         3.75        32.05        58.78        23.11         7.10 
TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 
        1.15        30.18         0.92        40.96         6.67        12.43 
TCGA-14-1794 TCGA-14-1795 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 
        0.99         1.97         7.63         5.88         7.17        17.49 
TCGA-14-2555 TCGA-14-3477 TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 TCGA-16-0846 
        7.96         3.78        13.78        50.53        19.10         3.91 
TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 
       17.59        26.07        16.37         4.31        29.03         4.57 
TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 
       10.29        14.01         9.14        21.24        13.97         6.41 
TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 
       11.77        21.90         8.61         0.66        14.27         3.39 
TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1389 TCGA-19-1392 TCGA-19-1786 
       10.75         9.07         5.95         4.64         3.65         7.17 
TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 
       12.66         3.25         0.13         9.67         4.87         1.08 
TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 
        7.53         0.16         4.08        24.23         7.00         7.04 
TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 
        6.64        17.19         8.02        18.90         4.73        12.10 
TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-19-A60I TCGA-19-A6J5 
        1.78        14.07        16.80        14.96        17.79        28.54 
TCGA-26-1438 TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 
       10.03         9.73        31.33         7.13         9.37         9.40 
TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 
       14.86         5.49         8.88        18.97         1.58         7.92 
TCGA-26-6174 TCGA-26-A7UX TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 
        2.33        19.33        16.60         9.86        24.23        40.54 
TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 
       21.30        30.05        14.04        11.51        24.76        10.39 
TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 
        7.59         2.86        14.40         0.20         2.53         9.21 
TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 
        8.35         7.63         8.48         1.22         1.55         2.83 
TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 
        0.13         0.66         6.74         4.77         7.30         5.26 
TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 
       14.93        11.28        17.88        14.53        11.77        31.27 
TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-6450 
       23.44        11.01        13.64         5.16        22.68         5.42 
TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 
       15.39        21.07         0.49         0.10        15.85        19.50 
TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 
        1.18         4.67        12.69        14.86        16.93        12.23 
TCGA-32-2494 TCGA-32-2495 TCGA-32-2616 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 
       20.78        15.02         7.36         8.84        22.78        25.18 
TCGA-32-4208 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 
       21.14         3.72        12.59        19.86        10.85        19.23 
TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 
        0.85        13.35         8.94         0.99         4.44        11.84 
TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-4W-AA9S TCGA-4W-AA9T TCGA-74-6573 
        0.20        15.12        12.46         4.14        14.76         3.45 
TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 
       20.91         4.34        14.33         4.80         4.54         3.09 
TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 
        9.17         2.53        10.78        16.70         3.29         2.70 
TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 
       11.38        17.06         8.35        20.98         4.83         5.03 
TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 
        0.23         9.27         7.73         7.79         1.61        17.72 
TCGA-87-5896 TCGA-OX-A56R TCGA-RR-A6KA TCGA-RR-A6KC TCGA-CS-4938 TCGA-CS-4941 
       26.30         5.92         6.28        20.55         4.70         7.69 
TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 
       43.89        18.15        10.62        64.64        40.18         0.10 
TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 
       21.01         9.96         6.38        17.69        23.84        17.95 
TCGA-CS-6665 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 
       12.43         7.56         8.02         7.40         6.61       122.73 
TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5278 TCGA-DB-5279 
       81.96        75.25        47.93        72.92        50.17        44.52 
TCGA-DB-5280 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD 
       36.56        46.42        18.84        30.21        46.72        39.78 
TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O 
       37.45        33.57        72.95        31.63        24.20        25.48 
TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V 
       30.12         5.98        31.40        27.45        27.81        29.23 
TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O 
       14.40        18.51        12.10        11.24        17.88        30.74 
TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 
       16.18        19.96        31.82        30.31        14.40         8.02 
TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR 
       30.21        42.05        27.81        17.19        17.19        54.25 
TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 
       13.12        13.38        18.61        18.02        14.56        17.46 
TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 
        6.74        13.38         8.45         6.81       182.33        18.94 
TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6396 
       17.49        15.16       211.17        52.11        22.42        75.16 
TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 
       46.06        65.75         1.22        87.45         7.04        11.64 
TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 
      133.74        19.89        16.83        94.52       114.08         7.96 
TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 
        7.73        11.47       156.23       138.28        14.99       105.21 
TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 
        6.54         8.84        90.77        30.67        26.30        10.36 
TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7299 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 
        7.96        94.32        44.02        25.91        60.30        23.31 
TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 
       41.98         2.76         5.10        14.60        20.68        21.40 
TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS 
       19.13        16.96        14.17        14.24        12.59        15.12 
TCGA-DU-A5TT TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 
        4.96         5.65        12.20         8.65         2.70        77.98 
TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A7T6 
        7.23         5.98        11.41        26.76         7.13        17.98 
TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG 
      124.50        77.88        42.31        23.51         7.50        44.42 
TCGA-DU-A7TJ TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 
        0.56        67.46        41.13        79.99        57.93       134.27 
TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YO TCGA-E1-A7YW TCGA-E1-A7Z6 
       78.21        95.57       130.78        75.02        36.82        32.35 
TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5964 TCGA-FG-5965 
       14.33         0.23         0.20        47.77        34.36        36.82 
TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 
       18.77        14.93        24.99        18.44        15.35        17.88 
TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 
       22.55        20.61        20.09        12.95        13.68        14.24 
TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT 
       16.01        20.09        14.96        22.52        32.61        38.27 
TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K 
       10.72        18.38        18.71        23.70        14.76        17.82 
TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z 
       16.41        15.02        16.44        22.26        28.54        10.78 
TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 
       36.66        48.69        20.45        13.58         5.72        27.52 
TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7471 TCGA-HT-7473 TCGA-HT-7474 
        0.10         6.67        11.54         0.13        16.54         3.75 
TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 
       17.42         6.54         6.38        40.34        75.19        95.93 
TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 
      106.95       172.77         4.01         5.03        29.85        23.18 
TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 
        4.57        17.29         3.16        22.06        45.99        56.09 
TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 
       57.60         0.23        14.27         0.16        16.24         0.76 
TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7689 TCGA-HT-7690 
       44.68         6.05        42.74         0.10        14.96         0.10 
TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 
        0.10         2.96        17.52         6.90        14.53        39.48 
TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 
       19.23        39.09         0.23        50.63         0.49        23.61 
TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 
       37.15         0.33         0.13         3.68         5.33        35.47 
TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 
        3.72        11.28        31.43         1.64        16.24         9.40 
TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 
       63.55         0.10        37.87        33.01        12.23         6.25 
TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8113 
        0.10         0.46         2.50         5.56        13.78        29.59 
TCGA-HT-8114 TCGA-HT-8563 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 
       34.19        28.27         0.23        26.04         0.13        20.22 
TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 
        0.07        27.35         0.10         5.33         2.70        16.93 
TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H 
        1.81        16.14        16.83        17.52        17.65         2.43 
TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 
       10.52        15.35        11.05         0.10        29.92        19.89 
TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7493 TCGA-HW-7495 TCGA-HW-8319 
        8.32        19.23        40.18        35.90         4.31        21.70 
TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL 
       21.60        19.59        17.82        20.35        12.76        20.81 
TCGA-HW-A5KM TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW 
       20.71        42.77        14.40        14.40         0.23         6.71 
TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 
        1.64         2.37         2.30         4.11         5.88         7.63 
TCGA-P5-A5F4 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 
        0.76         0.16        10.42        13.25        11.64         0.20 
TCGA-P5-A731 TCGA-QH-A65R TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS 
        9.01        15.16        12.62        15.85        14.04        19.33 
TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ 
       14.83        14.53        13.61        12.23         2.20         9.17 
TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA 
       10.29        14.53        16.34        16.73         1.91        16.50 
TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO 
        5.03        11.08        12.99        88.83        94.03        32.65 
TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 
       59.38        30.87         5.46         9.90        28.08         2.07 
TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW 
       19.59        30.67        62.17        87.12        18.77        37.84 
TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 
       34.49        31.33        28.70        22.95        17.62        23.64 
TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB 
       32.61        16.08        98.24        95.93         5.85       106.39 
TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL 
       69.50        72.59        80.12        32.45        84.99        31.10 
TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ 
       19.86        15.91        18.61        15.16        14.07        36.13 
TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 
        7.92        22.32        23.51         8.19         2.04        17.03 
TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 
       15.06        13.12        28.37        13.02       169.84        10.39 
TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-TM-A7C3 
       99.06        30.05        98.63        31.59        18.71        49.45 
TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84C TCGA-TM-A84F 
       48.33        49.32        34.78        48.39        16.18        59.05 
TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O 
       40.64        30.44        28.08        40.83        24.79        33.24 
TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RH TCGA-TQ-A7RW 
       25.38        18.61        14.93        23.80        15.98        26.99 
TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CH 
       30.08        13.51         0.10         7.89        35.93        23.47 
TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K 
       37.05        16.01        23.21         8.05        51.06        13.32 
TCGA-WY-A858 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85D TCGA-WY-A85E 
       43.96        43.40        45.80        37.71        20.81 

  DEL PEAK 11(3Q29) MUTATED DEL PEAK 11(3Q29) WILD-TYPE 
                       0.03                        0.07 
  DEL PEAK 11(3Q29) MUTATED DEL PEAK 11(3Q29) WILD-TYPE 
                     122.47                      211.17 
  DEL PEAK 11(3Q29) MUTATED DEL PEAK 11(3Q29) WILD-TYPE 
                      16.36                       14.53 
[1] "0.0 - 122.5 (16.4)" "0.1 - 211.2 (14.5)"
[1] "hr=" "1.1"
D43V2, continuous
D43V3, binary
                             cls
clus                            0   1
  DEL PEAK 11(3Q29) MUTATED    61  37
  DEL PEAK 11(3Q29) WILD-TYPE 509 435
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 11(3Q29) MUTATED     61   37
  DEL PEAK 11(3Q29) WILD-TYPE  509  435
                        clus
vv                       DEL PEAK 11(3Q29) MUTATED DEL PEAK 11(3Q29) WILD-TYPE
  BRAIN                                         61                         509
  CENTRAL NERVOUS SYSTEM                        37                         435
[1] 2 2
[1] FALSE
D43V4, binary
                             cls
clus                            0   1
  DEL PEAK 11(3Q29) MUTATED    37  61
  DEL PEAK 11(3Q29) WILD-TYPE 393 551
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 11(3Q29) MUTATED     37   61
  DEL PEAK 11(3Q29) WILD-TYPE  393  551
        clus
vv       DEL PEAK 11(3Q29) MUTATED DEL PEAK 11(3Q29) WILD-TYPE
  FEMALE                        37                         393
  MALE                          61                         551
[1] 2 2
[1] FALSE
D43V5, continuous
                             vv
clus                          ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  DEL PEAK 11(3Q29) MUTATED            18                             2
  DEL PEAK 11(3Q29) WILD-TYPE         158                            25
                             vv
clus                          OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  DEL PEAK 11(3Q29) MUTATED                  7                12
  DEL PEAK 11(3Q29) WILD-TYPE              111               166
                             vv
clus                          TREATED PRIMARY GBM
  DEL PEAK 11(3Q29) MUTATED                     2
  DEL PEAK 11(3Q29) WILD-TYPE                  16
                             vv
clus                          UNTREATED PRIMARY (DE NOVO) GBM
  DEL PEAK 11(3Q29) MUTATED                                57
  DEL PEAK 11(3Q29) WILD-TYPE                             468
D43V6, multiclass
                                 clus
vv                                DEL PEAK 11(3Q29) MUTATED
  ASTROCYTOMA                                            18
  GLIOBLASTOMA MULTIFORME (GBM)                           2
  OLIGOASTROCYTOMA                                        7
  OLIGODENDROGLIOMA                                      12
  TREATED PRIMARY GBM                                     2
  UNTREATED PRIMARY (DE NOVO) GBM                        57
                                 clus
vv                                DEL PEAK 11(3Q29) WILD-TYPE
  ASTROCYTOMA                                             158
  GLIOBLASTOMA MULTIFORME (GBM)                            25
  OLIGOASTROCYTOMA                                        111
  OLIGODENDROGLIOMA                                       166
  TREATED PRIMARY GBM                                      16
  UNTREATED PRIMARY (DE NOVO) GBM                         468
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D43V7, binary
                             cls
clus                            0   1
  DEL PEAK 11(3Q29) MUTATED    54  44
  DEL PEAK 11(3Q29) WILD-TYPE 420 524
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 11(3Q29) MUTATED     54   44
  DEL PEAK 11(3Q29) WILD-TYPE  420  524
     clus
vv    DEL PEAK 11(3Q29) MUTATED DEL PEAK 11(3Q29) WILD-TYPE
  NO                         54                         420
  YES                        44                         524
[1] 2 2
[1] FALSE
                             vv
clus                          AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 11(3Q29) MUTATED                                  0     2
  DEL PEAK 11(3Q29) WILD-TYPE                                1    19
                             vv
clus                          BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 11(3Q29) MUTATED                           7    87
  DEL PEAK 11(3Q29) WILD-TYPE                        57   835
D43V8, multiclass
                                  clus
vv                                 DEL PEAK 11(3Q29) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                         0
  ASIAN                                                    2
  BLACK OR AFRICAN AMERICAN                                7
  WHITE                                                   87
                                  clus
vv                                 DEL PEAK 11(3Q29) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                           1
  ASIAN                                                     19
  BLACK OR AFRICAN AMERICAN                                 57
  WHITE                                                    835
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D43V9, binary
                             cls
clus                            0   1
  DEL PEAK 11(3Q29) MUTATED     3  82
  DEL PEAK 11(3Q29) WILD-TYPE  27 809
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 11(3Q29) MUTATED      3   82
  DEL PEAK 11(3Q29) WILD-TYPE   27  809
                        clus
vv                       DEL PEAK 11(3Q29) MUTATED DEL PEAK 11(3Q29) WILD-TYPE
  HISPANIC OR LATINO                             3                          27
  NOT HISPANIC OR LATINO                        82                         809
[1] 2 2
[1] FALSE

Clustering(44) Variable = DEL PEAK 12(4Q34.3) MUTATION ANALYSIS
D44V1, survival
                               sevent
clus2                             0   1
  DEL PEAK 12(4Q34.3) MUTATED   119  97
  DEL PEAK 12(4Q34.3) WILD-TYPE 361 462
  DEL PEAK 12(4Q34.3) MUTATED DEL PEAK 12(4Q34.3) WILD-TYPE 
                          216                           823 
  DEL PEAK 12(4Q34.3) MUTATED DEL PEAK 12(4Q34.3) WILD-TYPE 
                           97                           462 
$`DEL PEAK 12(4Q34.3) MUTATED`
TCGA-02-0024 TCGA-02-0026 TCGA-02-0054 TCGA-02-0064 TCGA-02-0079 TCGA-02-0432 
       53.10        24.59         6.54        19.73        27.25        47.11 
TCGA-02-2466 TCGA-02-2483 TCGA-02-2485 TCGA-06-0129 TCGA-06-0138 TCGA-06-0152 
       16.80        15.32        15.45        33.67        24.23        12.33 
TCGA-06-0166 TCGA-06-0174 TCGA-06-0175 TCGA-06-0177 TCGA-06-0192 TCGA-06-0216 
        5.85         3.22         4.04         4.18        38.96        24.16 
TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 TCGA-06-0744 TCGA-06-1087 TCGA-06-1800 
       35.11        12.62         5.75        46.88         4.04        26.79 
TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 TCGA-06-2569 TCGA-06-5416 TCGA-06-5856 
       13.61        33.90         1.08         0.43         6.71         3.75 
TCGA-06-5859 TCGA-06-6389 TCGA-06-6390 TCGA-06-A5U0 TCGA-08-0246 TCGA-08-0350 
        4.57         7.79         5.39         4.70         4.18        29.23 
TCGA-08-0351 TCGA-08-0354 TCGA-08-0356 TCGA-08-0358 TCGA-08-0386 TCGA-12-0619 
       65.33        17.95        31.10        22.29        18.02        34.92 
TCGA-12-0691 TCGA-12-0769 TCGA-12-0827 TCGA-12-1098 TCGA-12-1598 TCGA-12-3644 
       12.13        15.06        38.76         3.98        15.65        59.77 
TCGA-12-3646 TCGA-12-3653 TCGA-14-0736 TCGA-14-0740 TCGA-14-0787 TCGA-14-0813 
       44.02        14.53        15.12        11.97         2.24         1.35 
TCGA-14-0862 TCGA-14-0867 TCGA-14-1453 TCGA-14-1454 TCGA-14-1458 TCGA-14-1821 
        2.89         2.04         1.15        30.18         6.67        17.79 
TCGA-14-1823 TCGA-15-0742 TCGA-15-1447 TCGA-15-1449 TCGA-16-0848 TCGA-16-1045 
       17.85        13.78        53.19        13.28        17.59        29.03 
TCGA-19-1387 TCGA-19-1388 TCGA-19-1390 TCGA-19-2629 TCGA-19-4065 TCGA-19-A6J5 
        5.95        12.95        25.38        24.23         7.04        28.54 
TCGA-26-1442 TCGA-26-A7UX TCGA-27-1838 TCGA-27-2518 TCGA-28-1749 TCGA-28-1756 
       31.33        19.33        11.51        24.76         9.21         2.83 
TCGA-28-2514 TCGA-28-5214 TCGA-28-5220 TCGA-32-1973 TCGA-32-2491 TCGA-32-2632 
        5.26        23.44        12.76        21.07        12.23         8.84 
TCGA-32-2634 TCGA-32-4208 TCGA-41-5651 TCGA-76-4934 TCGA-76-6285 TCGA-76-6286 
       22.78        21.14        15.12         2.53         8.35        20.98 
TCGA-OX-A56R TCGA-CS-4943 TCGA-CS-5390 TCGA-CS-6666 TCGA-CS-6667 TCGA-DB-5274 
        5.92        18.15        64.64         8.48         7.56        75.25 
TCGA-DB-5275 TCGA-DB-5277 TCGA-DB-5279 TCGA-DB-5281 TCGA-DB-A4XA TCGA-DB-A4XE 
       47.93        50.86        44.52        78.28        18.84        37.45 
TCGA-DB-A4XH TCGA-DB-A64W TCGA-DB-A75O TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66G 
       31.63        14.40        30.74        30.21        42.05        17.19 
TCGA-DH-A7UV TCGA-DU-5851 TCGA-DU-5853 TCGA-DU-5871 TCGA-DU-5874 TCGA-DU-6399 
       18.61        17.46        13.38        18.94        15.16        65.75 
TCGA-DU-6400 TCGA-DU-6405 TCGA-DU-6410 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7010 
        1.22        19.89         7.96        62.96       156.23        14.99 
TCGA-DU-7018 TCGA-DU-7294 TCGA-DU-7299 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7309 
       30.67        94.32        44.02        25.91        60.30         2.76 
TCGA-DU-8165 TCGA-DU-8168 TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TU TCGA-DU-A5TW 
       19.13        14.17        12.59        15.12         3.65         5.65 
TCGA-DU-A6S3 TCGA-DU-A6S8 TCGA-DU-A76R TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-E1-5302 
        2.70         5.98        21.30       124.50        77.88        50.14 
TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5322 
       67.46        41.13        79.99        57.93       134.27       130.78 
TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 
       14.33         0.23         0.20        47.77        25.48        34.36 
TCGA-FG-7636 TCGA-FG-7638 TCGA-FG-8185 TCGA-FG-8188 TCGA-FG-A4MY TCGA-FG-A60J 
       17.88        22.55        14.24        14.96        23.70        14.76 
TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A713 TCGA-HT-7467 
       16.41        15.02        16.44        22.26        20.45         0.10 
TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7471 TCGA-HT-7473 TCGA-HT-7476 TCGA-HT-7477 
        6.67        11.54         0.13        16.54         6.54        24.26 
TCGA-HT-7480 TCGA-HT-7677 TCGA-HT-7688 TCGA-HT-7692 TCGA-HT-7856 TCGA-HT-8105 
       75.19        16.24        31.69         2.96        39.09         6.25 
TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RC TCGA-HT-A616 TCGA-HT-A619 TCGA-HT-A74J 
       20.22         0.07         5.33         1.81        21.40        10.52 
TCGA-HT-A74K TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7491 TCGA-HW-7493 TCGA-HW-8321 
       15.35        19.89         8.32        40.18        35.90        19.59 
TCGA-IK-7675 TCGA-IK-8125 TCGA-P5-A5EV TCGA-P5-A5EZ TCGA-P5-A733 TCGA-QH-A6X4 
       19.00        42.77         0.23         2.30        13.61        14.53 
TCGA-QH-A6XA TCGA-RY-A83Z TCGA-S9-A6TW TCGA-S9-A6WD TCGA-S9-A6WL TCGA-S9-A6WP 
       16.50         9.90        37.84        69.50        31.10        15.16 
TCGA-S9-A7IS TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7QY TCGA-S9-A89Z 
        7.92        23.51         7.13        20.02        28.37        11.97 
TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84R TCGA-TM-A84T 
       48.33        49.32        34.78        48.39        18.61        23.80 
TCGA-TQ-A7RW TCGA-VM-A8C8 TCGA-WH-A86K TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85E 
       26.99        43.04        13.32        39.88        43.40        20.81 

$`DEL PEAK 12(4Q34.3) WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
       11.77         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 
       20.71        82.59        20.61        87.06        77.65        20.12 
TCGA-02-0025 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 
       42.74        12.16        90.58         2.83        14.14         3.62 
TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 
       10.72        10.52        18.31         6.87        14.73         3.22 
TCGA-02-0051 TCGA-02-0052 TCGA-02-0055 TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 
       15.09        12.59         2.50        19.86         8.35         9.57 
TCGA-02-0060 TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 
        6.02        26.43        28.70        25.05         5.49        10.19 
TCGA-02-0075 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 
       20.84        89.72        22.72        12.62        51.32         8.81 
TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 
       57.76        16.96         3.48        27.02        65.00        11.67 
TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 
       17.65        23.18        92.65        99.98        15.65        48.95 
TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 
       16.54        16.93        17.72        10.75        14.47         3.98 
TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 
       13.87        14.20        15.95        12.23         9.90         7.73 
TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 
       10.62         7.33        15.91        25.71         4.37        25.12 
TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0440 TCGA-02-0446 
       10.59        12.39        14.50        10.55        11.34         9.27 
TCGA-02-0451 TCGA-02-0456 TCGA-02-2470 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 
       16.21         3.35        12.92        20.32         2.70         6.15 
TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0130 
       20.38        47.61         6.94         3.98        22.72        12.95 
TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 
       25.35        14.30        26.70        11.90         0.20        10.29 
TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 
        2.20        11.74         2.33        20.09        17.79        10.09 
TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 
        8.61        19.46        46.59        13.94        10.45         3.19 
TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 
       10.82         9.44        11.80         3.42        56.91        10.65 
TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0176 TCGA-06-0178 
       19.66         3.29        13.12         4.47        91.00        88.14 
TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 
       20.25         3.65        69.90        73.84        27.22        44.58 
TCGA-06-0189 TCGA-06-0190 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 
       15.42        10.42         4.67         7.40         5.56         0.39 
TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 
        7.66         8.42         7.63         7.40        11.84         0.53 
TCGA-06-0214 TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 
       15.02         0.72        19.82        13.64        13.32        20.42 
TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 
       48.69        10.82         9.01         0.26        72.36         4.70 
TCGA-06-0412 TCGA-06-0413 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 
        9.57         3.16         5.75         9.80         2.10        23.57 
TCGA-06-0686 TCGA-06-0743 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 
       14.20        26.40         7.86         2.70         2.70         0.92 
TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 
       43.46        46.19         5.65         7.17        40.41        16.57 
TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1801 TCGA-06-1802 
       20.78        26.76        23.93         6.84        11.84        15.32 
TCGA-06-1806 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 
       15.32        12.49         4.93        17.65        12.56        30.64 
TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2570 TCGA-06-5408 
        5.95        16.64         5.98         4.37        31.50        11.74 
TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 
        3.55         8.35         4.54         8.81         8.98         8.55 
TCGA-06-5418 TCGA-06-5858 TCGA-06-6388 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 
        2.73         6.15         5.23         1.48       120.56         7.36 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
        8.32        12.85         4.77         1.55         4.77         4.96 
TCGA-06-A5U1 TCGA-06-A6S0 TCGA-06-A6S1 TCGA-06-A7TK TCGA-06-A7TL TCGA-08-0244 
        1.87         3.12         2.56         5.39         5.42        22.68 
TCGA-08-0245 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 
       37.84       115.86         1.74         8.42        25.71        12.16 
TCGA-08-0349 TCGA-08-0352 TCGA-08-0353 TCGA-08-0355 TCGA-08-0357 TCGA-08-0359 
        9.80         1.28         8.42        24.56        37.58         3.39 
TCGA-08-0375 TCGA-08-0380 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 
       12.23        14.93        15.35        13.97         0.72        12.56 
TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 
        4.27        42.15        11.08        19.59        58.68        19.33 
TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 
       10.75         4.80         7.27        15.98        18.41         7.56 
TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 
       15.35        14.73        12.99        10.45         7.59        94.78 
TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0692 TCGA-12-0703 
        0.10        38.17        25.97        26.66         3.65        20.38 
TCGA-12-0707 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 
       28.41        53.85        43.23         7.63         9.73        14.93 
TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 
       14.86        91.76        24.79        18.48        10.62        23.51 
TCGA-12-0826 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 
       27.78         8.94        20.58       127.59         5.82         7.59 
TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 
       33.21        21.73        15.98        12.23        15.85         9.11 
TCGA-12-1097 TCGA-12-1099 TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 TCGA-12-3648 
       14.53         4.14        25.68        14.73         6.77        26.93 
TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-5295 TCGA-12-5299 
       15.22        10.95        12.69        34.92        14.93         3.22 
TCGA-12-5301 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0789 TCGA-14-0790 
        2.04         0.95         6.21        23.05        11.24        13.78 
TCGA-14-0812 TCGA-14-0817 TCGA-14-0865 TCGA-14-0866 TCGA-14-0871 TCGA-14-1034 
        3.25         5.39        16.50        26.33        28.93        15.95 
TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 
       19.30         0.79         1.38         1.12         3.75        32.05 
TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1455 TCGA-14-1456 TCGA-14-1459 
       58.78        23.11         7.10         0.92        40.96        12.43 
TCGA-14-1794 TCGA-14-1795 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 
        0.99         1.97         7.63         5.88         7.17        17.49 
TCGA-14-2555 TCGA-14-3477 TCGA-14-4157 TCGA-15-1444 TCGA-15-1446 TCGA-16-0846 
        7.96         3.78         3.42        50.53        19.10         3.91 
TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 
       26.07        16.37         4.31         4.57        10.29        14.01 
TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 
        9.14        21.24        13.97         6.41        11.77        21.90 
TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 
        8.61         0.66        14.27         3.39        10.75         9.07 
TCGA-19-1389 TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 
        4.64         3.65         7.17        12.66         3.25         0.13 
TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 
        9.67         4.87         1.08         7.53         0.16         4.08 
TCGA-19-2631 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 
        7.00         6.64        17.19         8.02        18.90         4.73 
TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 
       12.10         1.78        22.49        14.07        16.80        14.96 
TCGA-19-A60I TCGA-19-A6J4 TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 TCGA-26-1443 
       17.79         3.98        10.03        13.87         9.73         7.13 
TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 
        9.37         9.40        14.86         5.49         8.88        18.97 
TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 
        1.58         7.92         2.33         5.06        16.60         9.86 
TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-2519 
       24.23        40.54        21.30        30.05        14.04        10.39 
TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 
       10.39        16.08         7.59         2.86        14.40        15.78 
TCGA-28-1746 TCGA-28-1747 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 
        0.20         2.53         8.35         7.63         8.48         1.22 
TCGA-28-1755 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 TCGA-28-2513 
        1.55         0.13         0.66         6.74         4.77         7.30 
TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 
       14.93        11.28        17.88        14.53        11.77        31.27 
TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-6450 TCGA-32-1970 
       11.01        13.64         5.16        22.68         5.42        15.39 
TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 
        0.49         0.10        15.85        19.50         1.18         4.67 
TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 
       12.69        14.86        16.93        20.78        15.02        15.95 
TCGA-32-2616 TCGA-32-2638 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 
        7.36        25.18         3.72        12.59        19.86        10.85 
TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 
       19.23         0.85        13.35         8.94         9.53         0.99 
TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-6646 TCGA-4W-AA9S TCGA-4W-AA9T 
        4.44        11.84         0.20        12.46         4.14        14.76 
TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 
        3.45        20.91         4.34        14.33         8.22         7.50 
TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4935 
        4.80         4.54         3.09         3.65         9.17        10.78 
TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6656 
       16.70         3.29         2.70        11.38        17.06         4.83 
TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 
        5.03         0.23         9.27         7.73         7.79         1.61 
TCGA-81-5911 TCGA-87-5896 TCGA-RR-A6KA TCGA-RR-A6KC TCGA-CS-4938 TCGA-CS-4941 
       17.72        26.30         6.28        20.55         4.70         7.69 
TCGA-CS-4942 TCGA-CS-4944 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 
       43.89        10.62        40.18         0.10        21.01         9.96 
TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6668 
        6.38        17.69        23.84        17.95        12.43         8.02 
TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5276 TCGA-DB-5278 
        7.40         6.61       122.73        81.96        72.92        50.17 
TCGA-DB-5280 TCGA-DB-A4X9 TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XF 
       36.56        46.42        30.21        46.72        39.78        33.57 
TCGA-DB-A4XG TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R 
       72.95        24.20        25.48        30.12         5.98        31.40 
TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L 
       27.45        27.81        29.23        18.51        12.10        11.24 
TCGA-DB-A75M TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 
       17.88        16.18        19.96        31.82        30.31        14.40 
TCGA-DH-5144 TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT 
        8.02        27.81        17.19        54.25        13.12        13.38 
TCGA-DH-A7UU TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5852 TCGA-DU-5854 TCGA-DU-5855 
        3.45        18.02        14.56         6.74         8.45         6.81 
TCGA-DU-5870 TCGA-DU-5872 TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 
      182.33        17.49       211.17        52.11        22.42        49.02 
TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 
       75.16        46.06        87.45         7.04        11.64       133.74 
TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7009 
       16.83        94.52       114.08         7.73        11.47       138.28 
TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7014 TCGA-DU-7015 TCGA-DU-7019 
      105.21         6.54         8.84       117.40        90.77        26.30 
TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7298 TCGA-DU-7300 TCGA-DU-7304 TCGA-DU-7306 
       10.36         7.96        18.94        62.01        23.31        41.98 
TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8166 
        5.10        23.74        14.60        20.68        21.40        16.96 
TCGA-DU-8167 TCGA-DU-A5TP TCGA-DU-A5TT TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S6 
       15.48        14.24         4.96        12.20         8.65        77.98 
TCGA-DU-A6S7 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A7T6 TCGA-DU-A7TB 
        7.23        11.41        26.76         7.13        17.98        42.31 
TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5318 TCGA-E1-5319 
       23.51         7.50        44.42         0.56        78.21        95.57 
TCGA-E1-A7YO TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7Z6 TCGA-FG-5965 TCGA-FG-6688 
       75.02        32.45        36.82        32.35        36.82        18.77 
TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7641 
       14.93        24.99        23.97        18.44        15.35        20.61 
TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8189 
       20.09        12.95        13.68        16.01        20.09        22.52 
TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A60K 
       32.61        38.27        10.72        18.38        18.71        17.82 
TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A87N TCGA-FG-A87Q 
       28.54        10.78        36.66        48.69        13.58         5.72 
TCGA-FN-7833 TCGA-HT-7470 TCGA-HT-7472 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7478 
       27.52        40.11         0.03         3.75        17.42         6.38 
TCGA-HT-7479 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 
       40.34        95.93       106.95       172.77         4.01         5.03 
TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 
       29.85        23.18       122.47         4.57        17.29         3.16 
TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 
       22.06        45.99        56.09        57.60         0.23        14.27 
TCGA-HT-7676 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 
        0.16         0.76        44.68         6.05        42.74         0.10 
TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 
       14.96         0.10         0.10        17.52         6.90        14.53 
TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 
       39.48        19.23         0.23        50.63         0.49        23.61 
TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 
       37.15         0.33         0.13         3.68         5.33        35.47 
TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 
        3.72        11.28        31.43         1.64        16.24         9.40 
TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8106 
       63.55         0.10        37.87        33.01        12.23         0.10 
TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 
        0.46         2.50         5.56        13.78         0.23        29.59 
TCGA-HT-8114 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 
       34.19        28.27        15.72         0.23        26.04         0.13 
TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A617 TCGA-HT-A618 
       27.35         0.10         2.70        16.93        16.14        16.83 
TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 
       17.52        17.65         2.43        11.05         0.10        29.92 
TCGA-HW-7490 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8322 TCGA-HW-A5KJ 
       19.23         4.31        21.70        21.60        17.82        20.35 
TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EW 
       12.76        20.81        20.71        14.40        14.40         6.71 
TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 
        1.64         2.37         4.11         5.88         7.63         0.76 
TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 
        1.28         0.16        10.42        13.25        11.64         0.20 
TCGA-P5-A731 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z 
        9.01        15.16         2.53        12.62        15.85        14.04 
TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY 
       19.33        14.83        14.53        13.61        12.23         2.20 
TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XC 
        9.17        10.29        16.34        16.73         1.91         5.03 
TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M 
       11.08        12.99        88.83        94.03        32.65        59.38 
TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 
       30.87         5.46        28.08         2.07        19.59        30.67 
TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ 
       62.17        87.12        18.77        34.49        31.33        28.70 
TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 
       22.95        17.62        23.64        32.61        16.08        98.24 
TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH 
       95.93         5.85       106.39        72.59        80.12        32.45 
TCGA-S9-A6WI TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WQ TCGA-S9-A7IQ 
       84.99        19.86        15.91        18.61        14.07        36.13 
TCGA-S9-A7IX TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX 
       22.32         8.19         2.04        17.03        15.06        13.12 
TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 
       13.02       169.84        10.39        99.06        30.05        98.63 
TCGA-S9-A7R8 TCGA-S9-A89V TCGA-TM-A7C3 TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F 
       31.59        18.71        49.45        24.92        16.18        59.05 
TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M 
       40.64        30.44        28.08        24.16        40.83        24.79 
TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84S TCGA-TQ-A7RH TCGA-VM-A8C9 TCGA-VM-A8CA 
       33.24        25.38        14.93        15.98        30.08        13.51 
TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M 
        0.10         7.89        35.93        23.47        37.05        16.01 
TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WY-A858 TCGA-WY-A85B TCGA-WY-A85C 
       23.21         8.05        51.06        43.96        45.80        46.88 
TCGA-WY-A85D 
       37.71 

  DEL PEAK 12(4Q34.3) MUTATED DEL PEAK 12(4Q34.3) WILD-TYPE 
                         0.07                          0.03 
  DEL PEAK 12(4Q34.3) MUTATED DEL PEAK 12(4Q34.3) WILD-TYPE 
                       156.23                        211.17 
  DEL PEAK 12(4Q34.3) MUTATED DEL PEAK 12(4Q34.3) WILD-TYPE 
                       17.915                        14.070 
[1] "0.1 - 156.2 (17.9)" "0.0 - 211.2 (14.1)"
[1] "hr=" "1.5"
D44V2, continuous
D44V3, binary
                               cls
clus                              0   1
  DEL PEAK 12(4Q34.3) MUTATED    91 125
  DEL PEAK 12(4Q34.3) WILD-TYPE 479 347
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 12(4Q34.3) MUTATED     91  125
  DEL PEAK 12(4Q34.3) WILD-TYPE  479  347
                        clus
vv                       DEL PEAK 12(4Q34.3) MUTATED
  BRAIN                                           91
  CENTRAL NERVOUS SYSTEM                         125
                        clus
vv                       DEL PEAK 12(4Q34.3) WILD-TYPE
  BRAIN                                            479
  CENTRAL NERVOUS SYSTEM                           347
[1] 2 2
[1] FALSE
D44V4, binary
                               cls
clus                              0   1
  DEL PEAK 12(4Q34.3) MUTATED    80 136
  DEL PEAK 12(4Q34.3) WILD-TYPE 350 476
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 12(4Q34.3) MUTATED     80  136
  DEL PEAK 12(4Q34.3) WILD-TYPE  350  476
        clus
vv       DEL PEAK 12(4Q34.3) MUTATED DEL PEAK 12(4Q34.3) WILD-TYPE
  FEMALE                          80                           350
  MALE                           136                           476
[1] 2 2
[1] FALSE
D44V5, continuous
                               vv
clus                            ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  DEL PEAK 12(4Q34.3) MUTATED            45                             4
  DEL PEAK 12(4Q34.3) WILD-TYPE         131                            23
                               vv
clus                            OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  DEL PEAK 12(4Q34.3) MUTATED                 30                50
  DEL PEAK 12(4Q34.3) WILD-TYPE               88               128
                               vv
clus                            TREATED PRIMARY GBM
  DEL PEAK 12(4Q34.3) MUTATED                     2
  DEL PEAK 12(4Q34.3) WILD-TYPE                  16
                               vv
clus                            UNTREATED PRIMARY (DE NOVO) GBM
  DEL PEAK 12(4Q34.3) MUTATED                                85
  DEL PEAK 12(4Q34.3) WILD-TYPE                             440
D44V6, multiclass
                                 clus
vv                                DEL PEAK 12(4Q34.3) MUTATED
  ASTROCYTOMA                                              45
  GLIOBLASTOMA MULTIFORME (GBM)                             4
  OLIGOASTROCYTOMA                                         30
  OLIGODENDROGLIOMA                                        50
  TREATED PRIMARY GBM                                       2
  UNTREATED PRIMARY (DE NOVO) GBM                          85
                                 clus
vv                                DEL PEAK 12(4Q34.3) WILD-TYPE
  ASTROCYTOMA                                               131
  GLIOBLASTOMA MULTIFORME (GBM)                              23
  OLIGOASTROCYTOMA                                           88
  OLIGODENDROGLIOMA                                         128
  TREATED PRIMARY GBM                                        16
  UNTREATED PRIMARY (DE NOVO) GBM                           440
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D44V7, binary
                               cls
clus                              0   1
  DEL PEAK 12(4Q34.3) MUTATED    97 119
  DEL PEAK 12(4Q34.3) WILD-TYPE 377 449
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 12(4Q34.3) MUTATED     97  119
  DEL PEAK 12(4Q34.3) WILD-TYPE  377  449
     clus
vv    DEL PEAK 12(4Q34.3) MUTATED DEL PEAK 12(4Q34.3) WILD-TYPE
  NO                           97                           377
  YES                         119                           449
[1] 2 2
[1] FALSE
                               vv
clus                            AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 12(4Q34.3) MUTATED                                  0     7
  DEL PEAK 12(4Q34.3) WILD-TYPE                                1    14
                               vv
clus                            BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 12(4Q34.3) MUTATED                          12   196
  DEL PEAK 12(4Q34.3) WILD-TYPE                        52   726
D44V8, multiclass
                                  clus
vv                                 DEL PEAK 12(4Q34.3) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                           0
  ASIAN                                                      7
  BLACK OR AFRICAN AMERICAN                                 12
  WHITE                                                    196
                                  clus
vv                                 DEL PEAK 12(4Q34.3) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                             1
  ASIAN                                                       14
  BLACK OR AFRICAN AMERICAN                                   52
  WHITE                                                      726
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D44V9, binary
                               cls
clus                              0   1
  DEL PEAK 12(4Q34.3) MUTATED     7 185
  DEL PEAK 12(4Q34.3) WILD-TYPE  23 706
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 12(4Q34.3) MUTATED      7  185
  DEL PEAK 12(4Q34.3) WILD-TYPE   23  706
                        clus
vv                       DEL PEAK 12(4Q34.3) MUTATED
  HISPANIC OR LATINO                               7
  NOT HISPANIC OR LATINO                         185
                        clus
vv                       DEL PEAK 12(4Q34.3) WILD-TYPE
  HISPANIC OR LATINO                                23
  NOT HISPANIC OR LATINO                           706
[1] 2 2
[1] FALSE

Clustering(45) Variable = DEL PEAK 13(5P15.33) MUTATION ANALYSIS
D45V1, survival
                                sevent
clus2                              0   1
  DEL PEAK 13(5P15.33) MUTATED    49  52
  DEL PEAK 13(5P15.33) WILD-TYPE 431 507
  DEL PEAK 13(5P15.33) MUTATED DEL PEAK 13(5P15.33) WILD-TYPE 
                           101                            938 
  DEL PEAK 13(5P15.33) MUTATED DEL PEAK 13(5P15.33) WILD-TYPE 
                            52                            507 
$`DEL PEAK 13(5P15.33) MUTATED`
TCGA-02-0014 TCGA-02-0052 TCGA-02-0069 TCGA-02-0084 TCGA-02-0115 TCGA-02-0339 
       82.59        12.59        28.70        12.62        15.65        12.39 
TCGA-02-2483 TCGA-06-0128 TCGA-06-0148 TCGA-06-0151 TCGA-06-0188 TCGA-06-0216 
       15.32        22.72        10.09        46.59        44.58        24.16 
TCGA-06-0414 TCGA-06-0686 TCGA-06-1087 TCGA-06-2569 TCGA-06-6389 TCGA-08-0245 
       35.11        14.20         4.04         0.43         7.79        37.84 
TCGA-08-0344 TCGA-08-0351 TCGA-08-0386 TCGA-08-0516 TCGA-08-0517 TCGA-12-0657 
      115.86        65.33        18.02        19.59        58.68         0.10 
TCGA-12-0818 TCGA-12-1093 TCGA-12-3652 TCGA-12-3653 TCGA-14-0740 TCGA-14-0817 
       91.76        15.98        34.92        14.53        11.97         5.39 
TCGA-14-0865 TCGA-14-0867 TCGA-14-0871 TCGA-14-1453 TCGA-14-1456 TCGA-14-1821 
       16.50         2.04        28.93         1.15        40.96        17.79 
TCGA-16-0846 TCGA-16-0850 TCGA-16-0861 TCGA-19-1387 TCGA-19-1388 TCGA-19-1787 
        3.91        16.37         4.31         5.95        12.95        12.66 
TCGA-19-4065 TCGA-19-5954 TCGA-19-A6J5 TCGA-26-5133 TCGA-27-1834 TCGA-27-1835 
        7.04        12.10        28.54        14.86        40.54        21.30 
TCGA-27-2521 TCGA-28-1755 TCGA-28-5215 TCGA-41-5651 TCGA-74-6575 TCGA-76-4925 
       10.39         1.55        11.01        15.12        20.91         4.80 
TCGA-76-4929 TCGA-CS-4943 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5281 TCGA-DB-A4XC 
        3.65        18.15        47.93        72.92        78.28        46.72 
TCGA-DB-A4XE TCGA-DB-A4XH TCGA-DB-A64X TCGA-DH-5140 TCGA-DH-A66D TCGA-DH-A66G 
       37.45        31.63        18.51        19.96        27.81        17.19 
TCGA-DU-6399 TCGA-DU-7007 TCGA-DU-7306 TCGA-DU-8165 TCGA-DU-A7T6 TCGA-E1-5302 
       65.75        62.96        41.98        19.13        17.98        50.14 
TCGA-E1-5304 TCGA-E1-A7YV TCGA-FG-5962 TCGA-FG-5965 TCGA-FG-6689 TCGA-FG-A4MW 
       41.13        32.45        47.77        36.82        14.93        18.38 
TCGA-FG-A4MY TCGA-FG-A6J3 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7688 TCGA-HT-7689 
       23.70        22.26         3.75        17.42        31.69        14.96 
TCGA-HT-7873 TCGA-HT-7879 TCGA-HT-7884 TCGA-HT-8106 TCGA-HT-A614 TCGA-HT-A61B 
       23.61         3.68        11.28         0.10         2.70        17.52 
TCGA-HT-A74O TCGA-P5-A5F4 TCGA-P5-A72W TCGA-RY-A83Z TCGA-S9-A6TV TCGA-S9-A6WM 
        0.10         0.76        10.42         9.90        18.77        19.86 
TCGA-S9-A7IX TCGA-S9-A7R7 TCGA-TM-A84I TCGA-TQ-A7RH TCGA-WY-A859 
       22.32        98.63        28.08        15.98        39.88 

$`DEL PEAK 13(5P15.33) WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
       11.77         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 
       20.71        20.61        87.06        77.65        20.12        53.10 
TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 
       42.74        24.59        12.16        90.58         2.83        14.14 
TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 
        3.62        10.72        10.52        18.31         6.87        14.73 
TCGA-02-0048 TCGA-02-0051 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 TCGA-02-0058 
        3.22        15.09         6.54         2.50        19.86         8.35 
TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0070 TCGA-02-0071 
        9.57         6.02        19.73        26.43        25.05         5.49 
TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0085 
       10.19        20.84        27.25        89.72        22.72        51.32 
TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 
        8.81        57.76        16.96         3.48        27.02        65.00 
TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 TCGA-02-0114 TCGA-02-0116 
       11.67        17.65        23.18        92.65        99.98        48.95 
TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 
       16.54        16.93        17.72        10.75        14.47         3.98 
TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 
       13.87        14.20        15.95        12.23         9.90         7.73 
TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 
       10.62         7.33        15.91        25.71         4.37        25.12 
TCGA-02-0338 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 
       10.59        14.50        10.55        47.11        11.34         9.27 
TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 TCGA-02-2485 TCGA-02-2486 
       16.21         3.35        16.80        12.92        15.45        20.32 
TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 
        2.70         6.15        20.38        47.61         6.94         3.98 
TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 
       33.67        12.95        25.35        14.30        26.70        24.23 
TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 
       11.90         0.20        10.29         2.20        11.74         2.33 
TCGA-06-0146 TCGA-06-0147 TCGA-06-0149 TCGA-06-0150 TCGA-06-0152 TCGA-06-0154 
       20.09        17.79         8.61        19.46        12.33        13.94 
TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 
       10.45         3.19        10.82         9.44        11.80         3.42 
TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 
       56.91        10.65         5.85        19.66         3.29        13.12 
TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 
        4.47         3.22         4.04        91.00         4.18        88.14 
TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0189 
       20.25         3.65        69.90        73.84        27.22        15.42 
TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 
       10.42        38.96         4.67         7.40         5.56         0.39 
TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 
        7.66         8.42         7.63         7.40        11.84         0.53 
TCGA-06-0214 TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 
       15.02         0.72        19.82        13.64        13.32        20.42 
TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 
       48.69        10.82         9.01         0.26        72.36         4.70 
TCGA-06-0412 TCGA-06-0413 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 
        9.57         3.16        12.62         5.75         5.75         9.80 
TCGA-06-0649 TCGA-06-0650 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 
        2.10        23.57        26.40        46.88         7.86         2.70 
TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 
        2.70         0.92        43.46        46.19         5.65         7.17 
TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 
       40.41        16.57        20.78        26.76        23.93         6.84 
TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-1806 
       26.79        11.84        15.32        13.61        33.90        15.32 
TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 
        1.08        12.49         4.93        17.65        12.56        30.64 
TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2570 TCGA-06-5408 
        5.95        16.64         5.98         4.37        31.50        11.74 
TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 
        3.55         8.35         4.54         8.81         8.98         8.55 
TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 
        6.71         2.73         3.75         6.15         4.57         5.23 
TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 
        5.39         1.48       120.56         7.36         8.32        12.85 
TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-06-A5U0 TCGA-06-A5U1 
        4.77         1.55         4.77         4.96         4.70         1.87 
TCGA-06-A6S0 TCGA-06-A6S1 TCGA-06-A7TK TCGA-06-A7TL TCGA-08-0244 TCGA-08-0246 
        3.12         2.56         5.39         5.42        22.68         4.18 
TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 
        1.74         8.42        25.71        12.16         9.80        29.23 
TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 
        1.28         8.42        17.95        24.56        31.10        37.58 
TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0389 TCGA-08-0390 
       22.29         3.39        12.23        14.93        15.35        13.97 
TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 TCGA-08-0518 
        0.72        12.56         4.27        42.15        11.08        19.33 
TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 
       10.75         4.80         7.27        15.98        18.41         7.56 
TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0654 
       15.35        14.73        12.99        34.92        10.45         7.59 
TCGA-12-0656 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 
       94.78        38.17        25.97        26.66        12.13         3.65 
TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 
       20.38        28.41        15.06        53.85        43.23         7.63 
TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 
        9.73        14.93        14.86        24.79        18.48        10.62 
TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 
       23.51        27.78        38.76         8.94        20.58       127.59 
TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 TCGA-12-1094 TCGA-12-1095 
        5.82         7.59        33.21        21.73        12.23        15.85 
TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 TCGA-12-1598 TCGA-12-1599 
        9.11        14.53         3.98         4.14        15.65        25.68 
TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 
       14.73         6.77        59.77        44.02        26.93        15.22 
TCGA-12-3650 TCGA-12-3651 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 
       10.95        12.69        14.93         3.22         2.04        15.12 
TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 
        0.95         6.21        23.05         2.24        11.24        13.78 
TCGA-14-0812 TCGA-14-0813 TCGA-14-0862 TCGA-14-0866 TCGA-14-1034 TCGA-14-1037 
        3.25         1.35         2.89        26.33        15.95        19.30 
TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 
        0.79         1.38         1.12         3.75        32.05        58.78 
TCGA-14-1451 TCGA-14-1452 TCGA-14-1454 TCGA-14-1455 TCGA-14-1458 TCGA-14-1459 
       23.11         7.10        30.18         0.92         6.67        12.43 
TCGA-14-1794 TCGA-14-1795 TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 
        0.99         1.97        17.85         7.63         5.88         7.17 
TCGA-14-2554 TCGA-14-2555 TCGA-14-3477 TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 
       17.49         7.96         3.78         3.42        13.78        50.53 
TCGA-15-1446 TCGA-15-1447 TCGA-15-1449 TCGA-16-0848 TCGA-16-0849 TCGA-16-1045 
       19.10        53.19        13.28        17.59        26.07        29.03 
TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 
        4.57        10.29        14.01         9.14        21.24        13.97 
TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 
        6.41        11.77        21.90         8.61         0.66        14.27 
TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 TCGA-19-1389 TCGA-19-1390 TCGA-19-1392 
        3.39        10.75         9.07         4.64        25.38         3.65 
TCGA-19-1786 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 
        7.17         3.25         0.13         9.67         4.87         1.08 
TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-5947 
        7.53         0.16         4.08        24.23         7.00         6.64 
TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5955 TCGA-19-5956 
       17.19         8.02        18.90         4.73         1.78        22.49 
TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-19-A60I TCGA-19-A6J4 TCGA-26-1438 
       14.07        16.80        14.96        17.79         3.98        10.03 
TCGA-26-1439 TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 
       13.87         9.73        31.33         7.13         9.37         9.40 
TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 
        5.49         8.88        18.97         1.58         7.92         2.33 
TCGA-26-A7UX TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1836 
       19.33         5.06        16.60         9.86        24.23        30.05 
TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2523 TCGA-27-2524 
       14.04        11.51        24.76        10.39        16.08         7.59 
TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 
        2.86        14.40        15.78         0.20         2.53         9.21 
TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1756 TCGA-28-1757 
        8.35         7.63         8.48         1.22         2.83         0.13 
TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 
        0.66         6.74         4.77         7.30         5.26        14.93 
TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 
       11.28        17.88        14.53        11.77        31.27        23.44 
TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 
       13.64         5.16        22.68        12.76         5.42        15.39 
TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 
       21.07         0.49         0.10        15.85        19.50         1.18 
TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 
        4.67        12.69        14.86        16.93        12.23        20.78 
TCGA-32-2495 TCGA-32-2615 TCGA-32-2616 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 
       15.02        15.95         7.36         8.84        22.78        25.18 
TCGA-32-4208 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 
       21.14         3.72        12.59        19.86        10.85        19.23 
TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 
        0.85        13.35         8.94         9.53         0.99         4.44 
TCGA-41-3915 TCGA-41-4097 TCGA-41-6646 TCGA-4W-AA9S TCGA-4W-AA9T TCGA-74-6573 
       11.84         0.20        12.46         4.14        14.76         3.45 
TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4926 TCGA-76-4928 
        4.34        14.33         8.22         7.50         4.54         3.09 
TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 
        9.17         2.53        10.78        16.70         3.29         2.70 
TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 
       11.38        17.06         8.35        20.98         4.83         5.03 
TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 
        0.23         9.27         7.73         7.79         1.61        17.72 
TCGA-87-5896 TCGA-OX-A56R TCGA-RR-A6KA TCGA-RR-A6KC TCGA-CS-4938 TCGA-CS-4941 
       26.30         5.92         6.28        20.55         4.70         7.69 
TCGA-CS-4942 TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 
       43.89        10.62        64.64        40.18         0.10        21.01 
TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 
        9.96         6.38        17.69        23.84        17.95        12.43 
TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 
        8.48         7.56         8.02         7.40         6.61       122.73 
TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 
       81.96        75.25        50.86        50.17        44.52        36.56 
TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XD TCGA-DB-A4XF TCGA-DB-A4XG 
       46.42        18.84        30.21        39.78        33.57        72.95 
TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S 
       24.20        25.48        30.12         5.98        31.40        27.45 
TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M 
       27.81        29.23        14.40        12.10        11.24        17.88 
TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 
       30.74        16.18        31.82        30.31        14.40         8.02 
TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66F TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT 
       30.21        42.05        17.19        54.25        13.12        13.38 
TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 
        3.45        18.61        18.02        14.56        17.46         6.74 
TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 
       13.38         8.45         6.81       182.33        18.94        17.49 
TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 
       15.16       211.17        52.11        22.42        49.02        75.16 
TCGA-DU-6397 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 
       46.06         1.22        87.45         7.04        11.64       133.74 
TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 
       19.89        16.83        94.52       114.08         7.96         7.73 
TCGA-DU-7006 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 
       11.47       156.23       138.28        14.99       105.21         6.54 
TCGA-DU-7013 TCGA-DU-7014 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 
        8.84       117.40        90.77        30.67        26.30        10.36 
TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 
        7.96        94.32        18.94        44.02        62.01        25.91 
TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 
       60.30        23.31         2.76         5.10        23.74        14.60 
TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP 
       20.68        21.40        16.96        15.48        14.17        14.24 
TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY 
       12.59        15.12         4.96         3.65         5.65        12.20 
TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K 
        8.65         2.70        77.98         7.23         5.98        11.41 
TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB 
       26.76         7.13        21.30       124.50        77.88        42.31 
TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5303 TCGA-E1-5305 
       23.51         7.50        44.42         0.56        67.46        79.99 
TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YO 
       57.93       134.27        78.21        95.57       130.78        75.02 
TCGA-E1-A7YW TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5963 
       36.82        32.35        14.33         0.23         0.20        25.48 
TCGA-FG-5964 TCGA-FG-6688 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 
       34.36        18.77        24.99        23.97        18.44        15.35 
TCGA-FG-7636 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 
       17.88        22.55        20.61        20.09        12.95        13.68 
TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 
       14.24        16.01        20.09        14.96        22.52        32.61 
TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MX TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L 
       38.27        10.72        18.71        14.76        17.82        16.41 
TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 
       15.02        16.44        28.54        10.78        36.66        48.69 
TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 
       20.45        13.58         5.72        27.52         0.10         6.67 
TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7476 
       11.54        40.11         0.13         0.03        16.54         6.54 
TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 
       24.26         6.38        40.34        75.19        95.93       106.95 
TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 
      172.77         4.01         5.03        29.85        23.18       122.47 
TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 
        4.57        17.29         3.16        22.06        45.99        56.09 
TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 
       57.60         0.23        14.27         0.16        16.24         0.76 
TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7690 TCGA-HT-7691 
       44.68         6.05        42.74         0.10         0.10         0.10 
TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 
        2.96        17.52         6.90        14.53        39.48        19.23 
TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7874 TCGA-HT-7875 
       39.09         0.23        50.63         0.49        37.15         0.33 
TCGA-HT-7877 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7902 TCGA-HT-8010 
        0.13         5.33        35.47         3.72        31.43         1.64 
TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 
       16.24         9.40        63.55         0.10        37.87        33.01 
TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 
       12.23         6.25         0.46         2.50         5.56        13.78 
TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS 
        0.23        29.59        34.19        28.27        15.72         0.23 
TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB 
       26.04         0.13        20.22         0.07        27.35         0.10 
TCGA-HT-A5RC TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 
        5.33        16.93         1.81        16.14        16.83        21.40 
TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HW-7486 
       17.65         2.43        10.52        15.35        11.05        29.92 
TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7493 TCGA-HW-7495 
       19.89         8.32        19.23        40.18        35.90         4.31 
TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK 
       21.70        21.60        19.59        17.82        20.35        12.76 
TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 
       20.81        20.71        19.00        42.77        14.40        14.40 
TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 
        0.23         6.71         1.64         2.37         2.30         4.11 
TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72X TCGA-P5-A72Z 
        5.88         7.63         1.28         0.16        13.25        11.64 
TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V 
        0.20         9.01        13.61        15.16         2.53        12.62 
TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW 
       15.85        14.04        19.33        14.83        14.53        13.61 
TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 
       12.23         2.20         9.17        10.29        14.53        16.34 
TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 
       16.73         1.91        16.50         5.03        11.08        12.99 
TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y 
       88.83        94.03        32.65        59.38        30.87         5.46 
TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU 
       28.08         2.07        19.59        30.67        62.17        87.12 
TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 
       37.84        34.49        31.33        28.70        22.95        17.62 
TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA 
       23.64        32.61        16.08        98.24        95.93         5.85 
TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI 
      106.39        69.50        72.59        80.12        32.45        84.99 
TCGA-S9-A6WL TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ 
       31.10        15.91        18.61        15.16        14.07        36.13 
TCGA-S9-A7IS TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 
        7.92        23.51         7.13        20.02         8.19         2.04 
TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 
       17.03        15.06        13.12        28.37        13.02       169.84 
TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z 
       10.39        99.06        30.05        31.59        18.71        11.97 
TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B 
       49.45        48.33        49.32        34.78        48.39        24.92 
TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84J TCGA-TM-A84L 
       16.18        59.05        40.64        30.44        24.16        40.83 
TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T 
       24.79        33.24        25.38        18.61        14.93        23.80 
TCGA-TQ-A7RW TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD 
       26.99        43.04        30.08        13.51         0.10         7.89 
TCGA-VM-A8CE TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI 
       35.93        23.47        37.05        16.01        23.21         8.05 
TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C 
       51.06        13.32        43.96        43.40        45.80        46.88 
TCGA-WY-A85D TCGA-WY-A85E 
       37.71        20.81 

  DEL PEAK 13(5P15.33) MUTATED DEL PEAK 13(5P15.33) WILD-TYPE 
                          0.10                           0.03 
  DEL PEAK 13(5P15.33) MUTATED DEL PEAK 13(5P15.33) WILD-TYPE 
                        115.86                         211.17 
  DEL PEAK 13(5P15.33) MUTATED DEL PEAK 13(5P15.33) WILD-TYPE 
                         18.02                          14.40 
[1] "0.1 - 115.9 (18.0)" "0.0 - 211.2 (14.4)"
[1] "hr=" "1.3"
D45V2, continuous
D45V3, binary
                                cls
clus                               0   1
  DEL PEAK 13(5P15.33) MUTATED    55  46
  DEL PEAK 13(5P15.33) WILD-TYPE 515 426
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 13(5P15.33) MUTATED     55   46
  DEL PEAK 13(5P15.33) WILD-TYPE  515  426
                        clus
vv                       DEL PEAK 13(5P15.33) MUTATED
  BRAIN                                            55
  CENTRAL NERVOUS SYSTEM                           46
                        clus
vv                       DEL PEAK 13(5P15.33) WILD-TYPE
  BRAIN                                             515
  CENTRAL NERVOUS SYSTEM                            426
[1] 2 2
[1] FALSE
D45V4, binary
                                cls
clus                               0   1
  DEL PEAK 13(5P15.33) MUTATED    39  62
  DEL PEAK 13(5P15.33) WILD-TYPE 391 550
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 13(5P15.33) MUTATED     39   62
  DEL PEAK 13(5P15.33) WILD-TYPE  391  550
        clus
vv       DEL PEAK 13(5P15.33) MUTATED DEL PEAK 13(5P15.33) WILD-TYPE
  FEMALE                           39                            391
  MALE                             62                            550
[1] 2 2
[1] FALSE
D45V5, continuous
                                vv
clus                             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  DEL PEAK 13(5P15.33) MUTATED            19                             2
  DEL PEAK 13(5P15.33) WILD-TYPE         157                            25
                                vv
clus                             OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  DEL PEAK 13(5P15.33) MUTATED                 19                 8
  DEL PEAK 13(5P15.33) WILD-TYPE               99               170
                                vv
clus                             TREATED PRIMARY GBM
  DEL PEAK 13(5P15.33) MUTATED                     1
  DEL PEAK 13(5P15.33) WILD-TYPE                  17
                                vv
clus                             UNTREATED PRIMARY (DE NOVO) GBM
  DEL PEAK 13(5P15.33) MUTATED                                52
  DEL PEAK 13(5P15.33) WILD-TYPE                             473
D45V6, multiclass
                                 clus
vv                                DEL PEAK 13(5P15.33) MUTATED
  ASTROCYTOMA                                               19
  GLIOBLASTOMA MULTIFORME (GBM)                              2
  OLIGOASTROCYTOMA                                          19
  OLIGODENDROGLIOMA                                          8
  TREATED PRIMARY GBM                                        1
  UNTREATED PRIMARY (DE NOVO) GBM                           52
                                 clus
vv                                DEL PEAK 13(5P15.33) WILD-TYPE
  ASTROCYTOMA                                                157
  GLIOBLASTOMA MULTIFORME (GBM)                               25
  OLIGOASTROCYTOMA                                            99
  OLIGODENDROGLIOMA                                          170
  TREATED PRIMARY GBM                                         17
  UNTREATED PRIMARY (DE NOVO) GBM                            473
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D45V7, binary
                                cls
clus                               0   1
  DEL PEAK 13(5P15.33) MUTATED    58  43
  DEL PEAK 13(5P15.33) WILD-TYPE 416 525
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 13(5P15.33) MUTATED     58   43
  DEL PEAK 13(5P15.33) WILD-TYPE  416  525
     clus
vv    DEL PEAK 13(5P15.33) MUTATED DEL PEAK 13(5P15.33) WILD-TYPE
  NO                            58                            416
  YES                           43                            525
[1] 2 2
[1] FALSE
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 13(5P15.33) MUTATED                                  0     3
  DEL PEAK 13(5P15.33) WILD-TYPE                                1    18
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 13(5P15.33) MUTATED                           5    91
  DEL PEAK 13(5P15.33) WILD-TYPE                        59   831
D45V8, multiclass
                                  clus
vv                                 DEL PEAK 13(5P15.33) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            0
  ASIAN                                                       3
  BLACK OR AFRICAN AMERICAN                                   5
  WHITE                                                      91
                                  clus
vv                                 DEL PEAK 13(5P15.33) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              1
  ASIAN                                                        18
  BLACK OR AFRICAN AMERICAN                                    59
  WHITE                                                       831
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D45V9, binary
                                cls
clus                               0   1
  DEL PEAK 13(5P15.33) MUTATED     4  84
  DEL PEAK 13(5P15.33) WILD-TYPE  26 807
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 13(5P15.33) MUTATED      4   84
  DEL PEAK 13(5P15.33) WILD-TYPE   26  807
                        clus
vv                       DEL PEAK 13(5P15.33) MUTATED
  HISPANIC OR LATINO                                4
  NOT HISPANIC OR LATINO                           84
                        clus
vv                       DEL PEAK 13(5P15.33) WILD-TYPE
  HISPANIC OR LATINO                                 26
  NOT HISPANIC OR LATINO                            807
[1] 2 2
[1] FALSE

Clustering(46) Variable = DEL PEAK 14(5Q34) MUTATION ANALYSIS
D46V1, survival
                             sevent
clus2                           0   1
  DEL PEAK 14(5Q34) MUTATED    56  71
  DEL PEAK 14(5Q34) WILD-TYPE 424 488
  DEL PEAK 14(5Q34) MUTATED DEL PEAK 14(5Q34) WILD-TYPE 
                        127                         912 
  DEL PEAK 14(5Q34) MUTATED DEL PEAK 14(5Q34) WILD-TYPE 
                         71                         488 
$`DEL PEAK 14(5Q34) MUTATED`
TCGA-02-0010 TCGA-02-0011 TCGA-02-0026 TCGA-02-0052 TCGA-02-0069 TCGA-02-0084 
       35.41        20.71        24.59        12.59        28.70        12.62 
TCGA-02-0104 TCGA-02-0333 TCGA-02-2483 TCGA-06-0128 TCGA-06-0148 TCGA-06-0175 
       65.00         4.37        15.32        22.72        10.09         4.04 
TCGA-06-0188 TCGA-06-0211 TCGA-06-0237 TCGA-06-0414 TCGA-06-0644 TCGA-06-0649 
       44.58        11.84        13.64        35.11        12.62         2.10 
TCGA-06-0686 TCGA-06-0744 TCGA-06-0877 TCGA-06-1087 TCGA-06-2569 TCGA-06-6389 
       14.20        46.88         5.65         4.04         0.43         7.79 
TCGA-06-A5U0 TCGA-06-A7TL TCGA-08-0344 TCGA-08-0350 TCGA-08-0386 TCGA-08-0516 
        4.70         5.42       115.86        29.23        18.02        19.59 
TCGA-08-0517 TCGA-08-0524 TCGA-12-0818 TCGA-12-1600 TCGA-12-3653 TCGA-14-0740 
       58.68         7.27        91.76        14.73        14.53        11.97 
TCGA-14-0817 TCGA-14-0865 TCGA-14-0867 TCGA-14-0871 TCGA-14-1453 TCGA-14-1821 
        5.39        16.50         2.04        28.93         1.15        17.79 
TCGA-14-3477 TCGA-15-1444 TCGA-15-1447 TCGA-16-0850 TCGA-16-1045 TCGA-19-0960 
        3.78        50.53        53.19        16.37        29.03         8.61 
TCGA-19-1387 TCGA-19-1786 TCGA-19-2629 TCGA-19-4065 TCGA-19-A6J5 TCGA-26-5133 
        5.95         7.17        24.23         7.04        28.54        14.86 
TCGA-26-5135 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-2521 TCGA-28-1756 
        8.88        40.54        21.30        30.05        10.39         2.83 
TCGA-28-5215 TCGA-41-2572 TCGA-41-4097 TCGA-41-5651 TCGA-76-4925 TCGA-76-4929 
       11.01        13.35         0.20        15.12         4.80         3.65 
TCGA-76-4934 TCGA-RR-A6KC TCGA-CS-6665 TCGA-CS-6666 TCGA-DB-5276 TCGA-DB-5277 
        2.53        20.55        12.43         8.48        72.92        50.86 
TCGA-DB-5281 TCGA-DB-A4XH TCGA-DB-A64X TCGA-DB-A75L TCGA-DH-5140 TCGA-DH-A66B 
       78.28        31.63        18.51        11.24        19.96        42.05 
TCGA-DH-A66D TCGA-DH-A66G TCGA-DH-A7UU TCGA-DU-6399 TCGA-DU-6401 TCGA-DU-6408 
       27.81        17.19         3.45        65.75        87.45       114.08 
TCGA-DU-7007 TCGA-DU-7010 TCGA-DU-8165 TCGA-DU-A5TU TCGA-DU-A6S7 TCGA-DU-A7T6 
       62.96        14.99        19.13         3.65         7.23        17.98 
TCGA-E1-5302 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-FG-5963 TCGA-FG-A4MW 
       50.14        41.13        79.99        57.93        25.48        18.38 
TCGA-FG-A6J3 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7477 TCGA-HT-7609 TCGA-HT-7879 
       22.26        11.54        40.11        24.26        45.99         3.68 
TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8106 TCGA-HT-A5R7 TCGA-HT-A614 TCGA-HT-A618 
       11.28        31.43         0.10        20.22         2.70        16.83 
TCGA-IK-7675 TCGA-P5-A5EZ TCGA-P5-A5F1 TCGA-P5-A72X TCGA-QH-A65S TCGA-RY-A83Z 
       19.00         2.30         5.88        13.25         2.53         9.90 
TCGA-S9-A6TS TCGA-S9-A6TV TCGA-S9-A6WM TCGA-S9-A6WO TCGA-S9-A7IS TCGA-S9-A7R7 
       62.17        18.77        19.86        18.61         7.92        98.63 
TCGA-S9-A89Z TCGA-TM-A7CF TCGA-TM-A84I TCGA-WH-A86K TCGA-WY-A859 TCGA-WY-A85B 
       11.97        48.39        28.08        13.32        39.88        45.80 
TCGA-WY-A85D 
       37.71 

$`DEL PEAK 14(5Q34) WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0014 
       11.77         4.73        18.35        23.18        10.59        82.59 
TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 TCGA-02-0025 
       20.61        87.06        77.65        20.12        53.10        42.74 
TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 
       12.16        90.58         2.83        14.14         3.62        10.72 
TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 TCGA-02-0051 
       10.52        18.31         6.87        14.73         3.22        15.09 
TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 
        6.54         2.50        19.86         8.35         9.57         6.02 
TCGA-02-0064 TCGA-02-0068 TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 
       19.73        26.43        25.05         5.49        10.19        20.84 
TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 
       27.25        89.72        22.72        51.32         8.81        57.76 
TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 
       16.96         3.48        27.02        11.67        17.65        23.18 
TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 
       92.65        99.98        15.65        48.95        16.54        16.93 
TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 
       17.72        10.75        14.47         3.98        13.87        14.20 
TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 
       15.95        12.23         9.90         7.73        10.62         7.33 
TCGA-02-0330 TCGA-02-0332 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 
       15.91        25.71        25.12        10.59        12.39        14.50 
TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 
       10.55        47.11        11.34         9.27        16.21         3.35 
TCGA-02-2466 TCGA-02-2470 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 
       16.80        12.92        15.45        20.32         2.70         6.15 
TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0129 TCGA-06-0130 
       20.38        47.61         6.94         3.98        33.67        12.95 
TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 
       25.35        14.30        26.70        24.23        11.90         0.20 
TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 
       10.29         2.20        11.74         2.33        20.09        17.79 
TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 
        8.61        19.46        46.59        12.33        13.94        10.45 
TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 
        3.19        10.82         9.44        11.80         3.42        56.91 
TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 
       10.65         5.85        19.66         3.29        13.12         4.47 
TCGA-06-0174 TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 
        3.22        91.00         4.18        88.14        20.25         3.65 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 
       69.90        73.84        27.22        15.42        10.42        38.96 
TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 
        4.67         7.40         5.56         0.39         7.66         8.42 
TCGA-06-0209 TCGA-06-0210 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 
        7.63         7.40         0.53        15.02        24.16         0.72 
TCGA-06-0221 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 
       19.82        13.32        20.42        48.69        10.82         9.01 
TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 TCGA-06-0645 
        0.26        72.36         4.70         9.57         3.16         5.75 
TCGA-06-0646 TCGA-06-0648 TCGA-06-0650 TCGA-06-0743 TCGA-06-0745 TCGA-06-0747 
        5.75         9.80        23.57        26.40         7.86         2.70 
TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0878 TCGA-06-0879 
        2.70         0.92        43.46        46.19         7.17        40.41 
TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1800 
       16.57        20.78        26.76        23.93         6.84        26.79 
TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-1806 TCGA-06-2557 
       11.84        15.32        13.61        33.90        15.32         1.08 
TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 
       12.49         4.93        17.65        12.56        30.64         5.95 
TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 
       16.64         5.98         4.37        31.50        11.74         3.55 
TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 
        8.35         4.54         8.81         8.98         8.55         6.71 
TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6390 
        2.73         3.75         6.15         4.57         5.23         5.39 
TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 
        1.48       120.56         7.36         8.32        12.85         4.77 
TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-06-A5U1 TCGA-06-A6S0 TCGA-06-A6S1 
        1.55         4.77         4.96         1.87         3.12         2.56 
TCGA-06-A7TK TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 TCGA-08-0345 TCGA-08-0346 
        5.39        22.68        37.84         4.18         1.74         8.42 
TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 
       25.71        12.16         9.80        65.33         1.28         8.42 
TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 
       17.95        24.56        31.10        37.58        22.29         3.39 
TCGA-08-0375 TCGA-08-0380 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 
       12.23        14.93        15.35        13.97         0.72        12.56 
TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 
        4.27        42.15        11.08        19.33        10.75         4.80 
TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 
       15.98        18.41         7.56        15.35        14.73        12.99 
TCGA-12-0619 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 
       34.92        10.45         7.59        94.78         0.10        38.17 
TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 
       25.97        26.66        12.13         3.65        20.38        28.41 
TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 
       15.06        53.85        43.23         7.63         9.73        14.93 
TCGA-12-0780 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 
       14.86        24.79        18.48        10.62        23.51        27.78 
TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 
       38.76         8.94        20.58       127.59         5.82         7.59 
TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 
       33.21        21.73        15.98        12.23        15.85         9.11 
TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 TCGA-12-1598 TCGA-12-1599 TCGA-12-1602 
       14.53         3.98         4.14        15.65        25.68         6.77 
TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 
       59.77        44.02        26.93        15.22        10.95        12.69 
TCGA-12-3652 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0781 
       34.92        14.93         3.22         2.04        15.12         0.95 
TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 
        6.21        23.05         2.24        11.24        13.78         3.25 
TCGA-14-0813 TCGA-14-0862 TCGA-14-0866 TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 
        1.35         2.89        26.33        15.95        19.30         0.79 
TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 
        1.38         1.12         3.75        32.05        58.78        23.11 
TCGA-14-1452 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 
        7.10        30.18         0.92        40.96         6.67        12.43 
TCGA-14-1794 TCGA-14-1795 TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 
        0.99         1.97        17.85         7.63         5.88         7.17 
TCGA-14-2554 TCGA-14-2555 TCGA-14-4157 TCGA-15-0742 TCGA-15-1446 TCGA-15-1449 
       17.49         7.96         3.42        13.78        19.10        13.28 
TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 TCGA-16-0861 TCGA-16-1047 TCGA-16-1055 
        3.91        17.59        26.07         4.31         4.57        10.29 
TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 
       14.01         9.14        21.24        13.97         6.41        11.77 
TCGA-19-0957 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 
       21.90         0.66        14.27         3.39        10.75         9.07 
TCGA-19-1388 TCGA-19-1389 TCGA-19-1390 TCGA-19-1392 TCGA-19-1787 TCGA-19-1789 
       12.95         4.64        25.38         3.65        12.66         3.25 
TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 
        0.13         9.67         4.87         1.08         7.53         0.16 
TCGA-19-2625 TCGA-19-2631 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 
        4.08         7.00         6.64        17.19         8.02        18.90 
TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 
        4.73        12.10         1.78        22.49        14.07        16.80 
TCGA-19-5960 TCGA-19-A60I TCGA-19-A6J4 TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 
       14.96        17.79         3.98        10.03        13.87         9.73 
TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5134 TCGA-26-5136 
       31.33         7.13         9.37         9.40         5.49        18.97 
TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-26-A7UX TCGA-27-1830 TCGA-27-1831 
        1.58         7.92         2.33        19.33         5.06        16.60 
TCGA-27-1832 TCGA-27-1833 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 
        9.86        24.23        14.04        11.51        24.76        10.39 
TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 
       16.08         7.59         2.86        14.40        15.78         0.20 
TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 
        2.53         9.21         8.35         7.63         8.48         1.22 
TCGA-28-1755 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 TCGA-28-2513 
        1.55         0.13         0.66         6.74         4.77         7.30 
TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 
        5.26        14.93        11.28        17.88        14.53        11.77 
TCGA-28-5213 TCGA-28-5214 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 
       31.27        23.44        13.64         5.16        22.68        12.76 
TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 
        5.42        15.39        21.07         0.49         0.10        15.85 
TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 
       19.50         1.18         4.67        12.69        14.86        16.93 
TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2616 TCGA-32-2632 
       12.23        20.78        15.02        15.95         7.36         8.84 
TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 
       22.78        25.18        21.14         3.72        12.59        19.86 
TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 
       10.85        19.23         0.85         8.94         9.53         0.99 
TCGA-41-3393 TCGA-41-3915 TCGA-41-6646 TCGA-4W-AA9S TCGA-4W-AA9T TCGA-74-6573 
        4.44        11.84        12.46         4.14        14.76         3.45 
TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4926 
       20.91         4.34        14.33         8.22         7.50         4.54 
TCGA-76-4928 TCGA-76-4931 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 
        3.09         9.17        10.78        16.70         3.29         2.70 
TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 
       11.38        17.06         8.35        20.98         4.83         5.03 
TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 
        0.23         9.27         7.73         7.79         1.61        17.72 
TCGA-87-5896 TCGA-OX-A56R TCGA-RR-A6KA TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 
       26.30         5.92         6.28         4.70         7.69        43.89 
TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 
       18.15        10.62        64.64        40.18         0.10        21.01 
TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6667 
        9.96         6.38        17.69        23.84        17.95         7.56 
TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 
        8.02         7.40         6.61       122.73        81.96        75.25 
TCGA-DB-5275 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-A4X9 TCGA-DB-A4XA 
       47.93        50.17        44.52        36.56        46.42        18.84 
TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG 
       30.21        46.72        39.78        37.45        33.57        72.95 
TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S 
       24.20        25.48        30.12         5.98        31.40        27.45 
TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A75K TCGA-DB-A75M TCGA-DB-A75O 
       27.81        29.23        14.40        12.10        17.88        30.74 
TCGA-DB-A75P TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 
       16.18        31.82        30.31        14.40         8.02        30.21 
TCGA-DH-A66F TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UV TCGA-DU-5847 
       17.19        54.25        13.12        13.38        18.61        18.02 
TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 
       14.56        17.46         6.74        13.38         8.45         6.81 
TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 
      182.33        18.94        17.49        15.16       211.17        52.11 
TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6400 TCGA-DU-6402 
       22.42        49.02        75.16        46.06         1.22         7.04 
TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6410 
       11.64       133.74        19.89        16.83        94.52         7.96 
TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7011 TCGA-DU-7012 
        7.73        11.47       156.23       138.28       105.21         6.54 
TCGA-DU-7013 TCGA-DU-7014 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 
        8.84       117.40        90.77        30.67        26.30        10.36 
TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 
        7.96        94.32        18.94        44.02        62.01        25.91 
TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 
       60.30        23.31        41.98         2.76         5.10        23.74 
TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 
       14.60        20.68        21.40        16.96        15.48        14.17 
TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TW TCGA-DU-A5TY 
       14.24        12.59        15.12         4.96         5.65        12.20 
TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L 
        8.65         2.70        77.98         5.98        11.41        26.76 
TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC 
        7.13        21.30       124.50        77.88        42.31        23.51 
TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5303 TCGA-E1-5311 TCGA-E1-5318 
        7.50        44.42         0.56        67.46       134.27        78.21 
TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YO TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7Z6 
       95.57       130.78        75.02        32.45        36.82        32.35 
TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5964 TCGA-FG-5965 
       14.33         0.23         0.20        47.77        34.36        36.82 
TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 
       18.77        14.93        24.99        23.97        18.44        15.35 
TCGA-FG-7636 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 
       17.88        22.55        20.61        20.09        12.95        13.68 
TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 
       14.24        16.01        20.09        14.96        22.52        32.61 
TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K 
       38.27        10.72        18.71        23.70        14.76        17.82 
TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 
       16.41        15.02        16.44        28.54        10.78        36.66 
TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 
       48.69        20.45        13.58         5.72        27.52         0.10 
TCGA-HT-7468 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 
        6.67         0.13         0.03        16.54         3.75        17.42 
TCGA-HT-7476 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 
        6.54         6.38        40.34        75.19        95.93       106.95 
TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 
      172.77         4.01         5.03        29.85        23.18       122.47 
TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7610 TCGA-HT-7611 
        4.57        17.29         3.16        22.06        56.09        57.60 
TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 
        0.23        14.27         0.16        16.24         0.76        44.68 
TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 
        6.05        42.74         0.10        31.69        14.96         0.10 
TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 
        0.10         2.96        17.52         6.90        14.53        39.48 
TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 
       19.23        39.09         0.23        50.63         0.49        23.61 
TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 
       37.15         0.33         0.13         5.33        35.47         3.72 
TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 
        1.64        16.24         9.40        63.55         0.10        37.87 
TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 
       33.01        12.23         6.25         0.46         2.50         5.56 
TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8563 TCGA-HT-8564 
       13.78         0.23        29.59        34.19        28.27        15.72 
TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB 
        0.23        26.04         0.13         0.07        27.35         0.10 
TCGA-HT-A5RC TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A619 TCGA-HT-A61B 
        5.33        16.93         1.81        16.14        21.40        17.52 
TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O 
       17.65         2.43        10.52        15.35        11.05         0.10 
TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7493 
       29.92        19.89         8.32        19.23        40.18        35.90 
TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ 
        4.31        21.70        21.60        19.59        17.82        20.35 
TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 
       12.76        20.81        20.71        42.77        14.40        14.40 
TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5F0 TCGA-P5-A5F2 
        0.23         6.71         1.64         2.37         4.11         7.63 
TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72Z TCGA-P5-A730 
        0.76         1.28         0.16        10.42        11.64         0.20 
TCGA-P5-A731 TCGA-P5-A733 TCGA-QH-A65R TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z 
        9.01        13.61        15.16        12.62        15.85        14.04 
TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY 
       19.33        14.83        14.53        13.61        12.23         2.20 
TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 
        9.17        10.29        14.53        16.34        16.73         1.91 
TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML 
       16.50         5.03        11.08        12.99        88.83        94.03 
TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A840 TCGA-RY-A843 
       32.65        59.38        30.87         5.46        28.08         2.07 
TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TU TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY 
       19.59        30.67        87.12        37.84        34.49        31.33 
TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 
       28.70        22.95        17.62        23.64        32.61        16.08 
TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE 
       98.24        95.93         5.85       106.39        69.50        72.59 
TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WN TCGA-S9-A6WP 
       80.12        32.45        84.99        31.10        15.91        15.16 
TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 
       14.07        36.13        22.32        23.51         7.13        20.02 
TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY 
        8.19         2.04        17.03        15.06        13.12        28.37 
TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R8 
       13.02       169.84        10.39        99.06        30.05        31.59 
TCGA-S9-A89V TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A84B 
       18.71        49.45        48.33        49.32        34.78        24.92 
TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84J TCGA-TM-A84L 
       16.18        59.05        40.64        30.44        24.16        40.83 
TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T 
       24.79        33.24        25.38        18.61        14.93        23.80 
TCGA-TQ-A7RH TCGA-TQ-A7RW TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB 
       15.98        26.99        43.04        30.08        13.51         0.10 
TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS 
        7.89        35.93        23.47        37.05        16.01        23.21 
TCGA-VW-A8FI TCGA-W9-A837 TCGA-WY-A858 TCGA-WY-A85A TCGA-WY-A85C TCGA-WY-A85E 
        8.05        51.06        43.96        43.40        46.88        20.81 

  DEL PEAK 14(5Q34) MUTATED DEL PEAK 14(5Q34) WILD-TYPE 
                       0.10                        0.03 
  DEL PEAK 14(5Q34) MUTATED DEL PEAK 14(5Q34) WILD-TYPE 
                     115.86                      211.17 
  DEL PEAK 14(5Q34) MUTATED DEL PEAK 14(5Q34) WILD-TYPE 
                      17.19                       14.53 
[1] "0.1 - 115.9 (17.2)" "0.0 - 211.2 (14.5)"
[1] "hr=" "1.1"
D46V2, continuous
D46V3, binary
                             cls
clus                            0   1
  DEL PEAK 14(5Q34) MUTATED    68  59
  DEL PEAK 14(5Q34) WILD-TYPE 502 413
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 14(5Q34) MUTATED     68   59
  DEL PEAK 14(5Q34) WILD-TYPE  502  413
                        clus
vv                       DEL PEAK 14(5Q34) MUTATED DEL PEAK 14(5Q34) WILD-TYPE
  BRAIN                                         68                         502
  CENTRAL NERVOUS SYSTEM                        59                         413
[1] 2 2
[1] FALSE
D46V4, binary
                             cls
clus                            0   1
  DEL PEAK 14(5Q34) MUTATED    59  68
  DEL PEAK 14(5Q34) WILD-TYPE 371 544
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 14(5Q34) MUTATED     59   68
  DEL PEAK 14(5Q34) WILD-TYPE  371  544
        clus
vv       DEL PEAK 14(5Q34) MUTATED DEL PEAK 14(5Q34) WILD-TYPE
  FEMALE                        59                         371
  MALE                          68                         544
[1] 2 2
[1] FALSE
D46V5, continuous
                             vv
clus                          ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  DEL PEAK 14(5Q34) MUTATED            38                             5
  DEL PEAK 14(5Q34) WILD-TYPE         138                            22
                             vv
clus                          OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  DEL PEAK 14(5Q34) MUTATED                 12                 9
  DEL PEAK 14(5Q34) WILD-TYPE              106               169
                             vv
clus                          TREATED PRIMARY GBM
  DEL PEAK 14(5Q34) MUTATED                     1
  DEL PEAK 14(5Q34) WILD-TYPE                  17
                             vv
clus                          UNTREATED PRIMARY (DE NOVO) GBM
  DEL PEAK 14(5Q34) MUTATED                                62
  DEL PEAK 14(5Q34) WILD-TYPE                             463
D46V6, multiclass
                                 clus
vv                                DEL PEAK 14(5Q34) MUTATED
  ASTROCYTOMA                                            38
  GLIOBLASTOMA MULTIFORME (GBM)                           5
  OLIGOASTROCYTOMA                                       12
  OLIGODENDROGLIOMA                                       9
  TREATED PRIMARY GBM                                     1
  UNTREATED PRIMARY (DE NOVO) GBM                        62
                                 clus
vv                                DEL PEAK 14(5Q34) WILD-TYPE
  ASTROCYTOMA                                             138
  GLIOBLASTOMA MULTIFORME (GBM)                            22
  OLIGOASTROCYTOMA                                        106
  OLIGODENDROGLIOMA                                       169
  TREATED PRIMARY GBM                                      17
  UNTREATED PRIMARY (DE NOVO) GBM                         463
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D46V7, binary
                             cls
clus                            0   1
  DEL PEAK 14(5Q34) MUTATED    62  65
  DEL PEAK 14(5Q34) WILD-TYPE 412 503
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 14(5Q34) MUTATED     62   65
  DEL PEAK 14(5Q34) WILD-TYPE  412  503
     clus
vv    DEL PEAK 14(5Q34) MUTATED DEL PEAK 14(5Q34) WILD-TYPE
  NO                         62                         412
  YES                        65                         503
[1] 2 2
[1] FALSE
                             vv
clus                          AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 14(5Q34) MUTATED                                  0     3
  DEL PEAK 14(5Q34) WILD-TYPE                                1    18
                             vv
clus                          BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 14(5Q34) MUTATED                          10   114
  DEL PEAK 14(5Q34) WILD-TYPE                        54   808
D46V8, multiclass
                                  clus
vv                                 DEL PEAK 14(5Q34) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                         0
  ASIAN                                                    3
  BLACK OR AFRICAN AMERICAN                               10
  WHITE                                                  114
                                  clus
vv                                 DEL PEAK 14(5Q34) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                           1
  ASIAN                                                     18
  BLACK OR AFRICAN AMERICAN                                 54
  WHITE                                                    808
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D46V9, binary
                             cls
clus                            0   1
  DEL PEAK 14(5Q34) MUTATED     4 110
  DEL PEAK 14(5Q34) WILD-TYPE  26 781
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 14(5Q34) MUTATED      4  110
  DEL PEAK 14(5Q34) WILD-TYPE   26  781
                        clus
vv                       DEL PEAK 14(5Q34) MUTATED DEL PEAK 14(5Q34) WILD-TYPE
  HISPANIC OR LATINO                             4                          26
  NOT HISPANIC OR LATINO                       110                         781
[1] 2 2
[1] FALSE

Clustering(47) Variable = DEL PEAK 15(6P25.3) MUTATION ANALYSIS
D47V1, survival
                               sevent
clus2                             0   1
  DEL PEAK 15(6P25.3) MUTATED    39  92
  DEL PEAK 15(6P25.3) WILD-TYPE 441 467
  DEL PEAK 15(6P25.3) MUTATED DEL PEAK 15(6P25.3) WILD-TYPE 
                          131                           908 
  DEL PEAK 15(6P25.3) MUTATED DEL PEAK 15(6P25.3) WILD-TYPE 
                           92                           467 
$`DEL PEAK 15(6P25.3) MUTATED`
TCGA-02-0023 TCGA-02-0026 TCGA-02-0039 TCGA-02-0048 TCGA-02-0051 TCGA-02-0074 
       20.12        24.59        10.52         3.22        15.09        10.19 
TCGA-02-0080 TCGA-02-0086 TCGA-02-0113 TCGA-02-0115 TCGA-02-0266 TCGA-02-0281 
       89.72         8.81        92.65        15.65        17.72         3.98 
TCGA-02-0289 TCGA-02-0325 TCGA-06-0129 TCGA-06-0130 TCGA-06-0138 TCGA-06-0141 
       14.20        10.62        33.67        12.95        24.23        10.29 
TCGA-06-0162 TCGA-06-0166 TCGA-06-0184 TCGA-06-0209 TCGA-06-0216 TCGA-06-0238 
        3.42         5.85        69.90         7.63        24.16        13.32 
TCGA-06-0402 TCGA-06-0644 TCGA-06-0649 TCGA-06-1087 TCGA-06-1806 TCGA-06-2561 
        0.26        12.62         2.10         4.04        15.32        17.65 
TCGA-06-5410 TCGA-06-5416 TCGA-06-5856 TCGA-06-6390 TCGA-06-6694 TCGA-08-0246 
        3.55         6.71         3.75         5.39         7.36         4.18 
TCGA-08-0353 TCGA-08-0389 TCGA-08-0392 TCGA-08-0510 TCGA-08-0512 TCGA-12-0616 
        8.42        15.35         0.72         4.27        42.15        14.73 
TCGA-12-0691 TCGA-12-0692 TCGA-12-0822 TCGA-12-1098 TCGA-12-1602 TCGA-12-3646 
       12.13         3.65        23.51         3.98         6.77        44.02 
TCGA-14-0736 TCGA-14-0817 TCGA-14-0865 TCGA-14-1396 TCGA-14-1453 TCGA-14-1823 
       15.12         5.39        16.50         1.12         1.15        17.85 
TCGA-14-3477 TCGA-16-0846 TCGA-16-0850 TCGA-16-1460 TCGA-19-1388 TCGA-19-1392 
        3.78         3.91        16.37         6.41        12.95         3.65 
TCGA-19-4065 TCGA-19-5947 TCGA-19-5960 TCGA-19-A6J4 TCGA-26-1439 TCGA-26-6174 
        7.04         6.64        14.96         3.98        13.87         2.33 
TCGA-27-1832 TCGA-27-2521 TCGA-27-2524 TCGA-28-1750 TCGA-28-1757 TCGA-28-2506 
        9.86        10.39         7.59         8.35         0.13         6.74 
TCGA-28-2509 TCGA-28-2514 TCGA-28-5220 TCGA-32-1976 TCGA-32-1980 TCGA-32-4210 
        4.77         5.26        12.76         0.49         1.18         3.72 
TCGA-32-4211 TCGA-32-4719 TCGA-41-4097 TCGA-41-5651 TCGA-74-6573 TCGA-74-6575 
       12.59        10.85         0.20        15.12         3.45        20.91 
TCGA-76-4925 TCGA-76-4928 TCGA-76-6285 TCGA-OX-A56R TCGA-CS-5397 TCGA-CS-6666 
        4.80         3.09         8.35         5.92         6.38         8.48 
TCGA-DB-5277 TCGA-DB-A4XF TCGA-DB-A4XH TCGA-DB-A64O TCGA-DH-A669 TCGA-DH-A66G 
       50.86        33.57        31.63        25.48        30.21        17.19 
TCGA-DU-6400 TCGA-DU-6402 TCGA-DU-6407 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-A7T6 
        1.22         7.04        94.52         5.10        23.74        17.98 
TCGA-FG-5963 TCGA-FG-5965 TCGA-FG-6690 TCGA-FG-A70Y TCGA-HT-7692 TCGA-HT-7855 
       25.48        36.82        24.99        28.54         2.96        19.23 
TCGA-HT-7873 TCGA-HT-7884 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A614 TCGA-HT-A617 
       23.61        11.28        15.72         0.23         2.70        16.14 
TCGA-HT-A74L TCGA-HW-7490 TCGA-HW-7493 TCGA-HW-8322 TCGA-IK-7675 TCGA-P5-A5EZ 
       11.05        19.23        35.90        17.82        19.00         2.30 
TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-QH-A6CS TCGA-QH-A6CX TCGA-S9-A6TV TCGA-S9-A6TZ 
        0.76         1.28        19.33        12.23        18.77        28.70 
TCGA-S9-A7IS TCGA-TM-A7CF TCGA-TQ-A7RW TCGA-VM-A8C8 TCGA-VM-A8CD 
        7.92        48.39        26.99        43.04         7.89 

$`DEL PEAK 15(6P25.3) WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
       11.77         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0024 
       20.71        82.59        20.61        87.06        77.65        53.10 
TCGA-02-0025 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 
       42.74        12.16        90.58         2.83        14.14         3.62 
TCGA-02-0038 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0052 TCGA-02-0054 
       10.72        18.31         6.87        14.73        12.59         6.54 
TCGA-02-0055 TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 
        2.50        19.86         8.35         9.57         6.02        19.73 
TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 TCGA-02-0075 TCGA-02-0079 
       26.43        28.70        25.05         5.49        20.84        27.25 
TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 
       22.72        12.62        51.32        57.76        16.96         3.48 
TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0114 
       27.02        65.00        11.67        17.65        23.18        99.98 
TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0269 TCGA-02-0271 TCGA-02-0285 
       48.95        16.54        16.93        10.75        14.47        13.87 
TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0326 TCGA-02-0330 
       15.95        12.23         9.90         7.73         7.33        15.91 
TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 
       25.71         4.37        25.12        10.59        12.39        14.50 
TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 
       10.55        47.11        11.34         9.27        16.21         3.35 
TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 
       16.80        12.92        15.32        15.45        20.32         2.70 
TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 
        6.15        20.38        47.61         6.94         3.98        22.72 
TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0139 TCGA-06-0140 TCGA-06-0142 
       25.35        14.30        26.70        11.90         0.20         2.20 
TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 
       11.74         2.33        20.09        17.79        10.09         8.61 
TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 
       19.46        46.59        12.33        13.94        10.45         3.19 
TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0164 TCGA-06-0165 TCGA-06-0168 
       10.82         9.44        11.80        56.91        10.65        19.66 
TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 
        3.29        13.12         4.47         3.22         4.04        91.00 
TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0185 TCGA-06-0187 
        4.18        88.14        20.25         3.65        73.84        27.22 
TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 
       44.58        15.42        10.42        38.96         4.67         7.40 
TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0210 TCGA-06-0211 
        5.56         0.39         7.66         8.42         7.40        11.84 
TCGA-06-0213 TCGA-06-0214 TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 TCGA-06-0240 
        0.53        15.02         0.72        19.82        13.64        20.42 
TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0409 TCGA-06-0410 TCGA-06-0412 
       48.69        10.82         9.01        72.36         4.70         9.57 
TCGA-06-0413 TCGA-06-0414 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0650 
        3.16        35.11         5.75         5.75         9.80        23.57 
TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 
       14.20        26.40        46.88         7.86         2.70         2.70 
TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 
        0.92        43.46        46.19         5.65         7.17        40.41 
TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1800 
       16.57        20.78        26.76        23.93         6.84        26.79 
TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 
       11.84        15.32        13.61        33.90         1.08        12.49 
TCGA-06-2559 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 
        4.93        12.56        30.64         5.95        16.64         5.98 
TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 TCGA-06-5411 TCGA-06-5412 
        4.37         0.43        31.50        11.74         8.35         4.54 
TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5418 TCGA-06-5858 TCGA-06-5859 
        8.81         8.98         8.55         2.73         6.15         4.57 
TCGA-06-6388 TCGA-06-6389 TCGA-06-6391 TCGA-06-6693 TCGA-06-6695 TCGA-06-6697 
        5.23         7.79         1.48       120.56         8.32        12.85 
TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-06-A5U0 TCGA-06-A5U1 
        4.77         1.55         4.77         4.96         4.70         1.87 
TCGA-06-A6S0 TCGA-06-A6S1 TCGA-06-A7TK TCGA-06-A7TL TCGA-08-0244 TCGA-08-0245 
        3.12         2.56         5.39         5.42        22.68        37.84 
TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 
      115.86         1.74         8.42        25.71        12.16         9.80 
TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 
       29.23        65.33         1.28        17.95        24.56        31.10 
TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 
       37.58        22.29         3.39        12.23        14.93        18.02 
TCGA-08-0390 TCGA-08-0509 TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 
       13.97        12.56        11.08        19.59        58.68        19.33 
TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 
       10.75         4.80         7.27        15.98        18.41         7.56 
TCGA-12-0615 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 
       15.35        12.99        34.92        10.45         7.59        94.78 
TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0703 TCGA-12-0707 
        0.10        38.17        25.97        26.66        20.38        28.41 
TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 
       15.06        53.85        43.23         7.63         9.73        14.93 
TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0826 
       14.86        91.76        24.79        18.48        10.62        27.78 
TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 
       38.76         8.94        20.58       127.59         5.82         7.59 
TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 
       33.21        21.73        15.98        12.23        15.85         9.11 
TCGA-12-1097 TCGA-12-1099 TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 TCGA-12-3644 
       14.53         4.14        15.65        25.68        14.73        59.77 
TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 
       26.93        15.22        10.95        12.69        34.92        14.53 
TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 
       14.93         3.22         2.04        11.97         0.95         6.21 
TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 
       23.05         2.24        11.24        13.78         3.25         1.35 
TCGA-14-0862 TCGA-14-0866 TCGA-14-0867 TCGA-14-0871 TCGA-14-1034 TCGA-14-1037 
        2.89        26.33         2.04        28.93        15.95        19.30 
TCGA-14-1043 TCGA-14-1395 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 
        0.79         1.38         3.75        32.05        58.78        23.11 
TCGA-14-1452 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 
        7.10        30.18         0.92        40.96         6.67        12.43 
TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 
        0.99         1.97        17.79         7.63         5.88         7.17 
TCGA-14-2554 TCGA-14-2555 TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 
       17.49         7.96         3.42        13.78        50.53        19.10 
TCGA-15-1447 TCGA-15-1449 TCGA-16-0848 TCGA-16-0849 TCGA-16-0861 TCGA-16-1045 
       53.19        13.28        17.59        26.07         4.31        29.03 
TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 
        4.57        10.29        14.01         9.14        21.24        13.97 
TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 
       11.77        21.90         8.61         0.66        14.27         3.39 
TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1389 TCGA-19-1390 TCGA-19-1786 
       10.75         9.07         5.95         4.64        25.38         7.17 
TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 
       12.66         3.25         0.13         9.67         4.87         1.08 
TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-5950 
        7.53         0.16         4.08        24.23         7.00        17.19 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 
        8.02        18.90         4.73        12.10         1.78        22.49 
TCGA-19-5958 TCGA-19-5959 TCGA-19-A60I TCGA-19-A6J5 TCGA-26-1438 TCGA-26-1440 
       14.07        16.80        17.79        28.54        10.03         9.73 
TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 
       31.33         7.13         9.37         9.40        14.86         5.49 
TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-A7UX TCGA-27-1830 
        8.88        18.97         1.58         7.92        19.33         5.06 
TCGA-27-1831 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 
       16.60        24.23        40.54        21.30        30.05        14.04 
TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2523 TCGA-27-2526 TCGA-27-2527 
       11.51        24.76        10.39        16.08         2.86        14.40 
TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1751 TCGA-28-1752 
       15.78         0.20         2.53         9.21         7.63         8.48 
TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-2502 TCGA-28-2513 TCGA-28-5204 
        1.22         1.55         2.83         0.66         7.30        14.93 
TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 
       11.28        17.88        14.53        11.77        31.27        23.44 
TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-6450 TCGA-32-1970 
       11.01        13.64         5.16        22.68         5.42        15.39 
TCGA-32-1973 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1982 TCGA-32-1986 
       21.07         0.10        15.85        19.50         4.67        12.69 
TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 
       14.86        16.93        12.23        20.78        15.02        15.95 
TCGA-32-2616 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4213 
        7.36         8.84        22.78        25.18        21.14        19.86 
TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 
       19.23         0.85        13.35         8.94         9.53         0.99 
TCGA-41-3393 TCGA-41-3915 TCGA-41-6646 TCGA-4W-AA9S TCGA-4W-AA9T TCGA-74-6577 
        4.44        11.84        12.46         4.14        14.76         4.34 
TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4926 TCGA-76-4929 TCGA-76-4931 
       14.33         8.22         7.50         4.54         3.65         9.17 
TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 
        2.53        10.78        16.70         3.29         2.70        11.38 
TCGA-76-6282 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 
       17.06        20.98         4.83         5.03         0.23         9.27 
TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 TCGA-RR-A6KA 
        7.73         7.79         1.61        17.72        26.30         6.28 
TCGA-RR-A6KC TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 
       20.55         4.70         7.69        43.89        18.15        10.62 
TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-6186 
       64.64        40.18         0.10        21.01         9.96        17.69 
TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 
       23.84        17.95        12.43         7.56         8.02         7.40 
TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 
        6.61       122.73        81.96        75.25        47.93        72.92 
TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA 
       50.17        44.52        36.56        78.28        46.42        18.84 
TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XG TCGA-DB-A64L 
       30.21        46.72        39.78        37.45        72.95        24.20 
TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V 
       30.12         5.98        31.40        27.45        27.81        29.23 
TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O 
       14.40        18.51        12.10        11.24        17.88        30.74 
TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 
       16.18        19.96        31.82        30.31        14.40         8.02 
TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT 
       42.05        27.81        17.19        54.25        13.12        13.38 
TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 
        3.45        18.61        18.02        14.56        17.46         6.74 
TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 
       13.38         8.45         6.81       182.33        18.94        17.49 
TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 
       15.16       211.17        52.11        22.42        49.02        75.16 
TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6401 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 
       46.06        65.75        87.45        11.64       133.74        19.89 
TCGA-DU-6406 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 
       16.83       114.08         7.96         7.73        11.47        62.96 
TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 
      156.23       138.28        14.99       105.21         6.54         8.84 
TCGA-DU-7014 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 
      117.40        90.77        30.67        26.30        10.36         7.96 
TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 
       94.32        18.94        44.02        62.01        25.91        60.30 
TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 
       23.31        41.98         2.76        14.60        20.68        21.40 
TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR 
       19.13        16.96        15.48        14.17        14.24        12.59 
TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 
       15.12         4.96         3.65         5.65        12.20         8.65 
TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L 
        2.70        77.98         7.23         5.98        11.41        26.76 
TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC 
        7.13        21.30       124.50        77.88        42.31        23.51 
TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 
        7.50        44.42         0.56        50.14        67.46        41.13 
TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 
       79.99        57.93       134.27        78.21        95.57       130.78 
TCGA-E1-A7YO TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 
       75.02        32.45        36.82        32.35        14.33         0.23 
TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5964 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6691 
        0.20        47.77        34.36        18.77        14.93        23.97 
TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 
       18.44        15.35        17.88        22.55        20.61        20.09 
TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 
       12.95        13.68        14.24        16.01        20.09        14.96 
TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX 
       22.52        32.61        38.27        10.72        18.38        18.71 
TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 
       23.70        14.76        17.82        16.41        15.02        16.44 
TCGA-FG-A6J3 TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N 
       22.26        10.78        36.66        48.69        20.45        13.58 
TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 
        5.72        27.52         0.10         6.67        11.54        40.11 
TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 
        0.13         0.03        16.54         3.75        17.42         6.54 
TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 
       24.26         6.38        40.34        75.19        95.93       106.95 
TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 
      172.77         4.01         5.03        29.85        23.18       122.47 
TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 
        4.57        17.29         3.16        22.06        45.99        56.09 
TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 
       57.60         0.23        14.27         0.16        16.24         0.76 
TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 
       44.68         6.05        42.74         0.10        31.69        14.96 
TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 
        0.10         0.10        17.52         6.90        14.53        39.48 
TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7874 TCGA-HT-7875 
       39.09         0.23        50.63         0.49        37.15         0.33 
TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7902 
        0.13         3.68         5.33        35.47         3.72        31.43 
TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 
        1.64        16.24         9.40        63.55         0.10        37.87 
TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 
       33.01        12.23         6.25         0.10         0.46         2.50 
TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8563 
        5.56        13.78         0.23        29.59        34.19        28.27 
TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB 
       26.04         0.13        20.22         0.07        27.35         0.10 
TCGA-HT-A5RC TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61B 
        5.33        16.93         1.81        16.83        21.40        17.52 
TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74O TCGA-HW-7486 
       17.65         2.43        10.52        15.35         0.10        29.92 
TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 
       19.89         8.32        40.18         4.31        21.70        21.60 
TCGA-HW-8321 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-8125 
       19.59        20.35        12.76        20.81        20.71        42.77 
TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY 
       14.40        14.40         0.23         6.71         1.64         2.37 
TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X 
        4.11         5.88         7.63         0.16        10.42        13.25 
TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-QH-A65R TCGA-QH-A65S 
       11.64         0.20         9.01        13.61        15.16         2.53 
TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW 
       12.62        15.85        14.04        14.83        14.53        13.61 
TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 
        2.20         9.17        10.29        14.53        16.34        16.73 
TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK 
        1.91        16.50         5.03        11.08        12.99        88.83 
TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z 
       94.03        32.65        59.38        30.87         5.46         9.90 
TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU 
       28.08         2.07        19.59        30.67        62.17        87.12 
TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 
       37.84        34.49        31.33        22.95        17.62        23.64 
TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB 
       32.61        16.08        98.24        95.93         5.85       106.39 
TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL 
       69.50        72.59        80.12        32.45        84.99        31.10 
TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ 
       19.86        15.91        18.61        15.16        14.07        36.13 
TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 
       22.32        23.51         7.13        20.02         8.19         2.04 
TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 
       17.03        15.06        13.12        28.37        13.02       169.84 
TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V 
       10.39        99.06        30.05        98.63        31.59        18.71 
TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A84B 
       11.97        49.45        48.33        49.32        34.78        24.92 
TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J 
       16.18        59.05        40.64        30.44        28.08        24.16 
TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S 
       40.83        24.79        33.24        25.38        18.61        14.93 
TCGA-TM-A84T TCGA-TQ-A7RH TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CE 
       23.80        15.98        30.08        13.51         0.10        35.93 
TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 
       23.47        37.05        16.01        23.21         8.05        51.06 
TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C 
       13.32        43.96        39.88        43.40        45.80        46.88 
TCGA-WY-A85D TCGA-WY-A85E 
       37.71        20.81 

  DEL PEAK 15(6P25.3) MUTATED DEL PEAK 15(6P25.3) WILD-TYPE 
                         0.13                          0.03 
  DEL PEAK 15(6P25.3) MUTATED DEL PEAK 15(6P25.3) WILD-TYPE 
                        94.52                        211.17 
  DEL PEAK 15(6P25.3) MUTATED DEL PEAK 15(6P25.3) WILD-TYPE 
                        10.62                         15.02 
[1] "0.1 - 94.5 (10.6)"  "0.0 - 211.2 (15.0)"
[1] "hr=" "2"  
D47V2, continuous
D47V3, binary
                               cls
clus                              0   1
  DEL PEAK 15(6P25.3) MUTATED    88  44
  DEL PEAK 15(6P25.3) WILD-TYPE 482 428
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 15(6P25.3) MUTATED     88   44
  DEL PEAK 15(6P25.3) WILD-TYPE  482  428
                        clus
vv                       DEL PEAK 15(6P25.3) MUTATED
  BRAIN                                           88
  CENTRAL NERVOUS SYSTEM                          44
                        clus
vv                       DEL PEAK 15(6P25.3) WILD-TYPE
  BRAIN                                            482
  CENTRAL NERVOUS SYSTEM                           428
[1] 2 2
[1] FALSE
D47V4, binary
                               cls
clus                              0   1
  DEL PEAK 15(6P25.3) MUTATED    55  77
  DEL PEAK 15(6P25.3) WILD-TYPE 375 535
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 15(6P25.3) MUTATED     55   77
  DEL PEAK 15(6P25.3) WILD-TYPE  375  535
        clus
vv       DEL PEAK 15(6P25.3) MUTATED DEL PEAK 15(6P25.3) WILD-TYPE
  FEMALE                          55                           375
  MALE                            77                           535
[1] 2 2
[1] FALSE
D47V5, continuous
                               vv
clus                            ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  DEL PEAK 15(6P25.3) MUTATED            21                             3
  DEL PEAK 15(6P25.3) WILD-TYPE         155                            24
                               vv
clus                            OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  DEL PEAK 15(6P25.3) MUTATED                  9                14
  DEL PEAK 15(6P25.3) WILD-TYPE              109               164
                               vv
clus                            TREATED PRIMARY GBM
  DEL PEAK 15(6P25.3) MUTATED                     2
  DEL PEAK 15(6P25.3) WILD-TYPE                  16
                               vv
clus                            UNTREATED PRIMARY (DE NOVO) GBM
  DEL PEAK 15(6P25.3) MUTATED                                83
  DEL PEAK 15(6P25.3) WILD-TYPE                             442
D47V6, multiclass
                                 clus
vv                                DEL PEAK 15(6P25.3) MUTATED
  ASTROCYTOMA                                              21
  GLIOBLASTOMA MULTIFORME (GBM)                             3
  OLIGOASTROCYTOMA                                          9
  OLIGODENDROGLIOMA                                        14
  TREATED PRIMARY GBM                                       2
  UNTREATED PRIMARY (DE NOVO) GBM                          83
                                 clus
vv                                DEL PEAK 15(6P25.3) WILD-TYPE
  ASTROCYTOMA                                               155
  GLIOBLASTOMA MULTIFORME (GBM)                              24
  OLIGOASTROCYTOMA                                          109
  OLIGODENDROGLIOMA                                         164
  TREATED PRIMARY GBM                                        16
  UNTREATED PRIMARY (DE NOVO) GBM                           442
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D47V7, binary
                               cls
clus                              0   1
  DEL PEAK 15(6P25.3) MUTATED    66  66
  DEL PEAK 15(6P25.3) WILD-TYPE 408 502
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 15(6P25.3) MUTATED     66   66
  DEL PEAK 15(6P25.3) WILD-TYPE  408  502
     clus
vv    DEL PEAK 15(6P25.3) MUTATED DEL PEAK 15(6P25.3) WILD-TYPE
  NO                           66                           408
  YES                          66                           502
[1] 2 2
[1] FALSE
                               vv
clus                            AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 15(6P25.3) MUTATED                                  1     3
  DEL PEAK 15(6P25.3) WILD-TYPE                                0    18
                               vv
clus                            BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 15(6P25.3) MUTATED                           8   115
  DEL PEAK 15(6P25.3) WILD-TYPE                        56   807
D47V8, multiclass
                                  clus
vv                                 DEL PEAK 15(6P25.3) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                           1
  ASIAN                                                      3
  BLACK OR AFRICAN AMERICAN                                  8
  WHITE                                                    115
                                  clus
vv                                 DEL PEAK 15(6P25.3) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                             0
  ASIAN                                                       18
  BLACK OR AFRICAN AMERICAN                                   56
  WHITE                                                      807
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D47V9, binary
                               cls
clus                              0   1
  DEL PEAK 15(6P25.3) MUTATED     5 112
  DEL PEAK 15(6P25.3) WILD-TYPE  25 779
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 15(6P25.3) MUTATED      5  112
  DEL PEAK 15(6P25.3) WILD-TYPE   25  779
                        clus
vv                       DEL PEAK 15(6P25.3) MUTATED
  HISPANIC OR LATINO                               5
  NOT HISPANIC OR LATINO                         112
                        clus
vv                       DEL PEAK 15(6P25.3) WILD-TYPE
  HISPANIC OR LATINO                                25
  NOT HISPANIC OR LATINO                           779
[1] 2 2
[1] FALSE

Clustering(48) Variable = DEL PEAK 16(6Q22.31) MUTATION ANALYSIS
D48V1, survival
                                sevent
clus2                              0   1
  DEL PEAK 16(6Q22.31) MUTATED    68 157
  DEL PEAK 16(6Q22.31) WILD-TYPE 412 402
  DEL PEAK 16(6Q22.31) MUTATED DEL PEAK 16(6Q22.31) WILD-TYPE 
                           225                            814 
  DEL PEAK 16(6Q22.31) MUTATED DEL PEAK 16(6Q22.31) WILD-TYPE 
                           157                            402 
$`DEL PEAK 16(6Q22.31) MUTATED`
TCGA-02-0003 TCGA-02-0007 TCGA-02-0014 TCGA-02-0023 TCGA-02-0026 TCGA-02-0038 
        4.73        23.18        82.59        20.12        24.59        10.72 
TCGA-02-0039 TCGA-02-0048 TCGA-02-0051 TCGA-02-0058 TCGA-02-0060 TCGA-02-0074 
       10.52         3.22        15.09         8.35         6.02        10.19 
TCGA-02-0080 TCGA-02-0086 TCGA-02-0099 TCGA-02-0106 TCGA-02-0113 TCGA-02-0115 
       89.72         8.81         3.48        11.67        92.65        15.65 
TCGA-02-0116 TCGA-02-0258 TCGA-02-0281 TCGA-02-0317 TCGA-02-0324 TCGA-02-0325 
       48.95        16.54         3.98        12.23         7.73        10.62 
TCGA-02-0330 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-2466 TCGA-02-2483 
       15.91        14.50        10.55        47.11        16.80        15.32 
TCGA-06-0122 TCGA-06-0130 TCGA-06-0138 TCGA-06-0141 TCGA-06-0154 TCGA-06-0162 
        6.15        12.95        24.23        10.29        13.94         3.42 
TCGA-06-0166 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0192 TCGA-06-0201 
        5.85        69.90        73.84        27.22        38.96         0.39 
TCGA-06-0209 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0402 TCGA-06-0644 
        7.63        15.02        24.16         0.72         0.26        12.62 
TCGA-06-0646 TCGA-06-0649 TCGA-06-0750 TCGA-06-1806 TCGA-06-2557 TCGA-06-2561 
        5.75         2.10         0.92        15.32         1.08        17.65 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5413 TCGA-06-5415 TCGA-06-5416 TCGA-06-5856 
       11.74         3.55         8.81         8.55         6.71         3.75 
TCGA-06-6390 TCGA-06-6694 TCGA-06-6699 TCGA-06-A5U1 TCGA-06-A6S1 TCGA-08-0246 
        5.39         7.36         1.55         1.87         2.56         4.18 
TCGA-08-0353 TCGA-08-0355 TCGA-08-0358 TCGA-08-0375 TCGA-08-0380 TCGA-08-0392 
        8.42        24.56        22.29        12.23        14.93         0.72 
TCGA-08-0510 TCGA-08-0512 TCGA-08-0517 TCGA-08-0525 TCGA-12-0615 TCGA-12-0616 
        4.27        42.15        58.68        15.98        15.35        14.73 
TCGA-12-0654 TCGA-12-0656 TCGA-12-0691 TCGA-12-0692 TCGA-12-0772 TCGA-12-0780 
        7.59        94.78        12.13         3.65        53.85        14.86 
TCGA-12-0822 TCGA-12-1093 TCGA-12-1095 TCGA-12-1098 TCGA-12-1099 TCGA-12-1602 
       23.51        15.98        15.85         3.98         4.14         6.77 
TCGA-12-3646 TCGA-12-3653 TCGA-12-5299 TCGA-14-0736 TCGA-14-0787 TCGA-14-0817 
       44.02        14.53         3.22        15.12         2.24         5.39 
TCGA-14-0865 TCGA-14-1037 TCGA-14-1396 TCGA-14-1453 TCGA-14-1823 TCGA-14-4157 
       16.50        19.30         1.12         1.15        17.85         3.42 
TCGA-15-0742 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-16-1060 TCGA-16-1063 
       13.78         3.91         4.31        29.03         9.14        13.97 
TCGA-19-0962 TCGA-19-1392 TCGA-19-2619 TCGA-19-2629 TCGA-19-4065 TCGA-19-5947 
        0.66         3.65         9.67        24.23         7.04         6.64 
TCGA-19-5952 TCGA-19-5960 TCGA-19-A6J4 TCGA-26-1438 TCGA-26-1439 TCGA-26-1443 
       18.90        14.96         3.98        10.03        13.87         7.13 
TCGA-27-1832 TCGA-27-1833 TCGA-27-2524 TCGA-27-2526 TCGA-28-1750 TCGA-28-2506 
        9.86        24.23         7.59         2.86         8.35         6.74 
TCGA-28-2509 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5209 TCGA-28-5213 
        4.77         5.26        14.93        11.28        14.53        31.27 
TCGA-28-5220 TCGA-28-6450 TCGA-32-1980 TCGA-32-2495 TCGA-32-2615 TCGA-32-2634 
       12.76         5.42         1.18        15.02        15.95        22.78 
TCGA-32-4208 TCGA-32-4210 TCGA-32-4211 TCGA-32-4719 TCGA-41-2571 TCGA-41-2572 
       21.14         3.72        12.59        10.85         0.85        13.35 
TCGA-41-3392 TCGA-41-4097 TCGA-41-5651 TCGA-4W-AA9T TCGA-74-6573 TCGA-74-6575 
        0.99         0.20        15.12        14.76         3.45        20.91 
TCGA-76-4925 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-6282 TCGA-76-6285 
        4.80         3.09         3.65         9.17        17.06         8.35 
TCGA-OX-A56R TCGA-CS-4944 TCGA-CS-5397 TCGA-CS-6666 TCGA-DB-5280 TCGA-DB-A4XF 
        5.92        10.62         6.38         8.48        36.56        33.57 
TCGA-DB-A4XH TCGA-DB-A64O TCGA-DB-A75M TCGA-DH-A669 TCGA-DH-A66B TCGA-DU-5847 
       31.63        25.48        17.88        30.21        42.05        18.02 
TCGA-DU-5855 TCGA-DU-5872 TCGA-DU-6400 TCGA-DU-6405 TCGA-DU-6542 TCGA-DU-7006 
        6.81        17.49         1.22        19.89         7.73        11.47 
TCGA-DU-7012 TCGA-DU-7014 TCGA-DU-7298 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-A7T6 
        6.54       117.40        18.94         5.10        23.74        17.98 
TCGA-DU-A7TC TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-FG-5963 TCGA-FG-7636 
       23.51        41.13        79.99        57.93        25.48        17.88 
TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A6J3 TCGA-FN-7833 TCGA-HT-7475 TCGA-HT-7606 
       32.61        38.27        22.26        27.52        17.42        17.29 
TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7692 TCGA-HT-7855 TCGA-HT-7884 TCGA-HT-8564 
       31.69        14.96         2.96        19.23        11.28        15.72 
TCGA-HT-A4DS TCGA-HT-A5RB TCGA-HT-A617 TCGA-HT-A619 TCGA-HW-A5KK TCGA-P5-A5EV 
        0.23         0.10        16.14        21.40        12.76         0.23 
TCGA-P5-A5EZ TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72W TCGA-QH-A6CS 
        2.30         7.63         0.76         1.28        10.42        19.33 
TCGA-QH-A6CX TCGA-QH-A870 TCGA-RY-A83Z TCGA-S9-A6TZ TCGA-S9-A6U6 TCGA-S9-A7IS 
       12.23        12.99         9.90        28.70        16.08         7.92 
TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R8 TCGA-TM-A7CF TCGA-TM-A84Q TCGA-TQ-A7RW 
       10.39        99.06        31.59        48.39        25.38        26.99 
TCGA-VM-A8C8 TCGA-VM-A8CD TCGA-WY-A85B 
       43.04         7.89        45.80 

$`DEL PEAK 16(6Q22.31) WILD-TYPE`
TCGA-02-0001 TCGA-02-0006 TCGA-02-0009 TCGA-02-0010 TCGA-02-0011 TCGA-02-0015 
       11.77        18.35        10.59        35.41        20.71        20.61 
TCGA-02-0016 TCGA-02-0021 TCGA-02-0024 TCGA-02-0025 TCGA-02-0027 TCGA-02-0028 
       87.06        77.65        53.10        42.74        12.16        90.58 
TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 
        2.83        14.14         3.62        18.31         6.87        14.73 
TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 TCGA-02-0059 TCGA-02-0064 
       12.59         6.54         2.50        19.86         9.57        19.73 
TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 TCGA-02-0075 TCGA-02-0079 
       26.43        28.70        25.05         5.49        20.84        27.25 
TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0087 TCGA-02-0089 TCGA-02-0102 
       22.72        12.62        51.32        57.76        16.96        27.02 
TCGA-02-0104 TCGA-02-0107 TCGA-02-0111 TCGA-02-0114 TCGA-02-0260 TCGA-02-0266 
       65.00        17.65        23.18        99.98        16.93        17.72 
TCGA-02-0269 TCGA-02-0271 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0321 
       10.75        14.47        13.87        14.20        15.95         9.90 
TCGA-02-0326 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 
        7.33        25.71         4.37        25.12        10.59        12.39 
TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2470 TCGA-02-2485 
       11.34         9.27        16.21         3.35        12.92        15.45 
TCGA-02-2486 TCGA-06-0119 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 
       20.32         2.70        20.38        47.61         6.94         3.98 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        25.35        14.30        26.70        11.90 
TCGA-06-0140 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 
        0.20         2.20        11.74         2.33        20.09        17.79 
TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 TCGA-06-0155 
       10.09         8.61        19.46        46.59        12.33        10.45 
TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0164 TCGA-06-0165 
        3.19        10.82         9.44        11.80        56.91        10.65 
TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 
       19.66         3.29        13.12         4.47         3.22         4.04 
TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0188 
       91.00         4.18        88.14        20.25         3.65        44.58 
TCGA-06-0189 TCGA-06-0190 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0206 
       15.42        10.42         4.67         7.40         5.56         7.66 
TCGA-06-0208 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0221 TCGA-06-0237 
        8.42         7.40        11.84         0.53        19.82        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0409 
       13.32        20.42        48.69        10.82         9.01        72.36 
TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 TCGA-06-0645 TCGA-06-0648 
        4.70         9.57         3.16        35.11         5.75         9.80 
TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 
       23.57        14.20        26.40        46.88         7.86         2.70 
TCGA-06-0749 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 
        2.70        43.46        46.19         5.65         7.17        40.41 
TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1087 
       16.57        20.78        26.76        23.93         6.84         4.04 
TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-2558 
       26.79        11.84        15.32        13.61        33.90        12.49 
TCGA-06-2559 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 
        4.93        12.56        30.64         5.95        16.64         5.98 
TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5411 TCGA-06-5412 TCGA-06-5414 
        4.37         0.43        31.50         8.35         4.54         8.98 
TCGA-06-5418 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6391 
        2.73         6.15         4.57         5.23         7.79         1.48 
TCGA-06-6693 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6700 TCGA-06-6701 
      120.56         8.32        12.85         4.77         4.77         4.96 
TCGA-06-A5U0 TCGA-06-A6S0 TCGA-06-A7TK TCGA-06-A7TL TCGA-08-0244 TCGA-08-0245 
        4.70         3.12         5.39         5.42        22.68        37.84 
TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 
      115.86         1.74         8.42        25.71        12.16         9.80 
TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0354 TCGA-08-0356 TCGA-08-0357 
       29.23        65.33         1.28        17.95        31.10        37.58 
TCGA-08-0359 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 TCGA-08-0509 TCGA-08-0514 
        3.39        18.02        15.35        13.97        12.56        11.08 
TCGA-08-0516 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0529 
       19.59        19.33        10.75         4.80         7.27        18.41 
TCGA-08-0531 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0657 TCGA-12-0662 
        7.56        12.99        34.92        10.45         0.10        38.17 
TCGA-12-0670 TCGA-12-0688 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0773 
       25.97        26.66        20.38        28.41        15.06        43.23 
TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 
        7.63         9.73        14.93        91.76        24.79        18.48 
TCGA-12-0821 TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 
       10.62        27.78        38.76         8.94        20.58       127.59 
TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 TCGA-12-1094 TCGA-12-1096 
        5.82         7.59        33.21        21.73        12.23         9.11 
TCGA-12-1097 TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 TCGA-12-3644 TCGA-12-3648 
       14.53        15.65        25.68        14.73        59.77        26.93 
TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-5295 TCGA-12-5301 
       15.22        10.95        12.69        34.92        14.93         2.04 
TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0789 TCGA-14-0790 
       11.97         0.95         6.21        23.05        11.24        13.78 
TCGA-14-0812 TCGA-14-0813 TCGA-14-0862 TCGA-14-0866 TCGA-14-0867 TCGA-14-0871 
        3.25         1.35         2.89        26.33         2.04        28.93 
TCGA-14-1034 TCGA-14-1043 TCGA-14-1395 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 
       15.95         0.79         1.38         3.75        32.05        58.78 
TCGA-14-1451 TCGA-14-1452 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 
       23.11         7.10        30.18         0.92        40.96         6.67 
TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 TCGA-14-1825 TCGA-14-1827 
       12.43         0.99         1.97        17.79         7.63         5.88 
TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-3477 TCGA-15-1444 TCGA-15-1446 
        7.17        17.49         7.96         3.78        50.53        19.10 
TCGA-15-1447 TCGA-15-1449 TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 TCGA-16-1047 
       53.19        13.28        17.59        26.07        16.37         4.57 
TCGA-16-1055 TCGA-16-1056 TCGA-16-1062 TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 
       10.29        14.01        21.24         6.41        11.77        21.90 
TCGA-19-0960 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 
        8.61        14.27         3.39        10.75         9.07         5.95 
TCGA-19-1388 TCGA-19-1389 TCGA-19-1390 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 
       12.95         4.64        25.38         7.17        12.66         3.25 
TCGA-19-1791 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 
        0.13         4.87         1.08         7.53         0.16         4.08 
TCGA-19-2631 TCGA-19-5950 TCGA-19-5951 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 
        7.00        17.19         8.02         4.73        12.10         1.78 
TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-19-A60I TCGA-19-A6J5 TCGA-26-1440 
       22.49        14.07        16.80        17.79        28.54         9.73 
TCGA-26-1442 TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 
       31.33         9.37         9.40        14.86         5.49         8.88 
TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-26-A7UX TCGA-27-1830 
       18.97         1.58         7.92         2.33        19.33         5.06 
TCGA-27-1831 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 
       16.60        40.54        21.30        30.05        14.04        11.51 
TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2527 TCGA-27-2528 
       24.76        10.39        10.39        16.08        14.40        15.78 
TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 
        0.20         2.53         9.21         7.63         8.48         1.22 
TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2513 TCGA-28-5208 
        1.55         2.83         0.13         0.66         7.30        17.88 
TCGA-28-5211 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 
       11.77        23.44        11.01        13.64         5.16        22.68 
TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 
       15.39        21.07         0.49         0.10        15.85        19.50 
TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 
        4.67        12.69        14.86        16.93        12.23        20.78 
TCGA-32-2616 TCGA-32-2632 TCGA-32-2638 TCGA-32-4213 TCGA-32-5222 TCGA-41-2573 
        7.36         8.84        25.18        19.86        19.23         8.94 
TCGA-41-2575 TCGA-41-3393 TCGA-41-3915 TCGA-41-6646 TCGA-4W-AA9S TCGA-74-6577 
        9.53         4.44        11.84        12.46         4.14         4.34 
TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4926 TCGA-76-4934 TCGA-76-4935 
       14.33         8.22         7.50         4.54         2.53        10.78 
TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6286 TCGA-76-6656 
       16.70         3.29         2.70        11.38        20.98         4.83 
TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 
        5.03         0.23         9.27         7.73         7.79         1.61 
TCGA-81-5911 TCGA-87-5896 TCGA-RR-A6KA TCGA-RR-A6KC TCGA-CS-4938 TCGA-CS-4941 
       17.72        26.30         6.28        20.55         4.70         7.69 
TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 
       43.89        18.15        64.64        40.18         0.10        21.01 
TCGA-CS-5396 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6667 
        9.96        17.69        23.84        17.95        12.43         7.56 
TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 
        8.02         7.40         6.61       122.73        81.96        75.25 
TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5281 
       47.93        72.92        50.86        50.17        44.52        78.28 
TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE 
       46.42        18.84        30.21        46.72        39.78        37.45 
TCGA-DB-A4XG TCGA-DB-A64L TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S 
       72.95        24.20        30.12         5.98        31.40        27.45 
TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L 
       27.81        29.23        14.40        18.51        12.10        11.24 
TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 
       30.74        16.18        19.96        31.82        30.31        14.40 
TCGA-DH-5144 TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US 
        8.02        27.81        17.19        17.19        54.25        13.12 
TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 
       13.38         3.45        18.61        14.56        17.46         6.74 
TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5874 TCGA-DU-6392 
       13.38         8.45       182.33        18.94        15.16       211.17 
TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 
       52.11        22.42        49.02        75.16        46.06        65.75 
TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6406 TCGA-DU-6407 
       87.45         7.04        11.64       133.74        16.83        94.52 
TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 
      114.08         7.96        62.96       156.23       138.28        14.99 
TCGA-DU-7011 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 
      105.21         8.84        90.77        30.67        26.30        10.36 
TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 
        7.96        94.32        44.02        62.01        25.91        60.30 
TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 
       23.31        41.98         2.76        14.60        20.68        21.40 
TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR 
       19.13        16.96        15.48        14.17        14.24        12.59 
TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 
       15.12         4.96         3.65         5.65        12.20         8.65 
TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L 
        2.70        77.98         7.23         5.98        11.41        26.76 
TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TD 
        7.13        21.30       124.50        77.88        42.31         7.50 
TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5311 TCGA-E1-5318 
       44.42         0.56        50.14        67.46       134.27        78.21 
TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YO TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7Z6 
       95.57       130.78        75.02        32.45        36.82        32.35 
TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5964 TCGA-FG-5965 
       14.33         0.23         0.20        47.77        34.36        36.82 
TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 
       18.77        14.93        24.99        23.97        18.44        15.35 
TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 
       22.55        20.61        20.09        12.95        13.68        14.24 
TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-A4MU TCGA-FG-A4MW 
       16.01        20.09        14.96        22.52        10.72        18.38 
TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ 
       18.71        23.70        14.76        17.82        16.41        15.02 
TCGA-FG-A6J1 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 
       16.44        28.54        10.78        36.66        48.69        20.45 
TCGA-FG-A87N TCGA-FG-A87Q TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 
       13.58         5.72         0.10         6.67        11.54        40.11 
TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7476 TCGA-HT-7477 
        0.13         0.03        16.54         3.75         6.54        24.26 
TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 
        6.38        40.34        75.19        95.93       106.95       172.77 
TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 
        4.01         5.03        29.85        23.18       122.47         4.57 
TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 
        3.16        22.06        45.99        56.09        57.60         0.23 
TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 
       14.27         0.16        16.24         0.76        44.68         6.05 
TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7693 TCGA-HT-7694 
       42.74         0.10         0.10         0.10        17.52         6.90 
TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 
       14.53        39.48        39.09         0.23        50.63         0.49 
TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 
       23.61        37.15         0.33         0.13         3.68         5.33 
TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 
       35.47         3.72        31.43         1.64        16.24         9.40 
TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 
       63.55         0.10        37.87        33.01        12.23         6.25 
TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 
        0.10         0.46         2.50         5.56        13.78         0.23 
TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8563 TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 
       29.59        34.19        28.27        26.04         0.13        20.22 
TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 
        0.07        27.35         5.33         2.70        16.93         1.81 
TCGA-HT-A618 TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K 
       16.83        17.52        17.65         2.43        10.52        15.35 
TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 
       11.05         0.10        29.92        19.89         8.32        19.23 
TCGA-HW-7491 TCGA-HW-7493 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 
       40.18        35.90         4.31        21.70        21.60        19.59 
TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 
       17.82        20.35        20.81        20.71        19.00        42.77 
TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5F0 
       14.40        14.40         6.71         1.64         2.37         4.11 
TCGA-P5-A5F1 TCGA-P5-A72U TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 
        5.88         0.16        13.25        11.64         0.20         9.01 
TCGA-P5-A733 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z 
       13.61        15.16         2.53        12.62        15.85        14.04 
TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 
       14.83        14.53        13.61         2.20         9.17        10.29 
TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC 
       14.53        16.34        16.73         1.91        16.50         5.03 
TCGA-QH-A86X TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X 
       11.08        88.83        94.03        32.65        59.38        30.87 
TCGA-RY-A83Y TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS 
        5.46        28.08         2.07        19.59        30.67        62.17 
TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6U0 
       87.12        18.77        37.84        34.49        31.33        22.95 
TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA 
       17.62        23.64        32.61        98.24        95.93         5.85 
TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI 
      106.39        69.50        72.59        80.12        32.45        84.99 
TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ 
       31.10        19.86        15.91        18.61        15.16        14.07 
TCGA-S9-A7IQ TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 
       36.13        22.32        23.51         7.13        20.02         8.19 
TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ 
        2.04        17.03        15.06        13.12        28.37        13.02 
TCGA-S9-A7R1 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 
      169.84        30.05        98.63        18.71        11.97        49.45 
TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F 
       48.33        49.32        34.78        24.92        16.18        59.05 
TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M 
       40.64        30.44        28.08        24.16        40.83        24.79 
TCGA-TM-A84O TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RH TCGA-VM-A8C9 
       33.24        18.61        14.93        23.80        15.98        30.08 
TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CE TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M 
       13.51         0.10        35.93        23.47        37.05        16.01 
TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 
       23.21         8.05        51.06        13.32        43.96        39.88 
TCGA-WY-A85A TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       43.40        46.88        37.71        20.81 

  DEL PEAK 16(6Q22.31) MUTATED DEL PEAK 16(6Q22.31) WILD-TYPE 
                          0.10                           0.03 
  DEL PEAK 16(6Q22.31) MUTATED DEL PEAK 16(6Q22.31) WILD-TYPE 
                        117.40                         211.17 
  DEL PEAK 16(6Q22.31) MUTATED DEL PEAK 16(6Q22.31) WILD-TYPE 
                         12.59                          15.16 
[1] "0.1 - 117.4 (12.6)" "0.0 - 211.2 (15.2)"
[1] "hr=" "1.8"
D48V2, continuous
D48V3, binary
                                cls
clus                               0   1
  DEL PEAK 16(6Q22.31) MUTATED   157  69
  DEL PEAK 16(6Q22.31) WILD-TYPE 413 403
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 16(6Q22.31) MUTATED    157   69
  DEL PEAK 16(6Q22.31) WILD-TYPE  413  403
                        clus
vv                       DEL PEAK 16(6Q22.31) MUTATED
  BRAIN                                           157
  CENTRAL NERVOUS SYSTEM                           69
                        clus
vv                       DEL PEAK 16(6Q22.31) WILD-TYPE
  BRAIN                                             413
  CENTRAL NERVOUS SYSTEM                            403
[1] 2 2
[1] FALSE
D48V4, binary
                                cls
clus                               0   1
  DEL PEAK 16(6Q22.31) MUTATED   103 123
  DEL PEAK 16(6Q22.31) WILD-TYPE 327 489
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 16(6Q22.31) MUTATED    103  123
  DEL PEAK 16(6Q22.31) WILD-TYPE  327  489
        clus
vv       DEL PEAK 16(6Q22.31) MUTATED DEL PEAK 16(6Q22.31) WILD-TYPE
  FEMALE                          103                            327
  MALE                            123                            489
[1] 2 2
[1] FALSE
D48V5, continuous
                                vv
clus                             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  DEL PEAK 16(6Q22.31) MUTATED            44                             6
  DEL PEAK 16(6Q22.31) WILD-TYPE         132                            21
                                vv
clus                             OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  DEL PEAK 16(6Q22.31) MUTATED                 11                14
  DEL PEAK 16(6Q22.31) WILD-TYPE              107               164
                                vv
clus                             TREATED PRIMARY GBM
  DEL PEAK 16(6Q22.31) MUTATED                     7
  DEL PEAK 16(6Q22.31) WILD-TYPE                  11
                                vv
clus                             UNTREATED PRIMARY (DE NOVO) GBM
  DEL PEAK 16(6Q22.31) MUTATED                               144
  DEL PEAK 16(6Q22.31) WILD-TYPE                             381
D48V6, multiclass
                                 clus
vv                                DEL PEAK 16(6Q22.31) MUTATED
  ASTROCYTOMA                                               44
  GLIOBLASTOMA MULTIFORME (GBM)                              6
  OLIGOASTROCYTOMA                                          11
  OLIGODENDROGLIOMA                                         14
  TREATED PRIMARY GBM                                        7
  UNTREATED PRIMARY (DE NOVO) GBM                          144
                                 clus
vv                                DEL PEAK 16(6Q22.31) WILD-TYPE
  ASTROCYTOMA                                                132
  GLIOBLASTOMA MULTIFORME (GBM)                               21
  OLIGOASTROCYTOMA                                           107
  OLIGODENDROGLIOMA                                          164
  TREATED PRIMARY GBM                                         11
  UNTREATED PRIMARY (DE NOVO) GBM                            381
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D48V7, binary
                                cls
clus                               0   1
  DEL PEAK 16(6Q22.31) MUTATED   122 104
  DEL PEAK 16(6Q22.31) WILD-TYPE 352 464
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 16(6Q22.31) MUTATED    122  104
  DEL PEAK 16(6Q22.31) WILD-TYPE  352  464
     clus
vv    DEL PEAK 16(6Q22.31) MUTATED DEL PEAK 16(6Q22.31) WILD-TYPE
  NO                           122                            352
  YES                          104                            464
[1] 2 2
[1] FALSE
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 16(6Q22.31) MUTATED                                  1     6
  DEL PEAK 16(6Q22.31) WILD-TYPE                                0    15
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 16(6Q22.31) MUTATED                          18   194
  DEL PEAK 16(6Q22.31) WILD-TYPE                        46   728
D48V8, multiclass
                                  clus
vv                                 DEL PEAK 16(6Q22.31) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            1
  ASIAN                                                       6
  BLACK OR AFRICAN AMERICAN                                  18
  WHITE                                                     194
                                  clus
vv                                 DEL PEAK 16(6Q22.31) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              0
  ASIAN                                                        15
  BLACK OR AFRICAN AMERICAN                                    46
  WHITE                                                       728
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D48V9, binary
                                cls
clus                               0   1
  DEL PEAK 16(6Q22.31) MUTATED     4 193
  DEL PEAK 16(6Q22.31) WILD-TYPE  26 698
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 16(6Q22.31) MUTATED      4  193
  DEL PEAK 16(6Q22.31) WILD-TYPE   26  698
                        clus
vv                       DEL PEAK 16(6Q22.31) MUTATED
  HISPANIC OR LATINO                                4
  NOT HISPANIC OR LATINO                          193
                        clus
vv                       DEL PEAK 16(6Q22.31) WILD-TYPE
  HISPANIC OR LATINO                                 26
  NOT HISPANIC OR LATINO                            698
[1] 2 2
[1] FALSE

Clustering(49) Variable = DEL PEAK 17(6Q26) MUTATION ANALYSIS
D49V1, survival
                             sevent
clus2                           0   1
  DEL PEAK 17(6Q26) MUTATED    76 171
  DEL PEAK 17(6Q26) WILD-TYPE 404 388
  DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE 
                        247                         792 
  DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE 
                        171                         388 
$`DEL PEAK 17(6Q26) MUTATED`
TCGA-02-0003 TCGA-02-0007 TCGA-02-0015 TCGA-02-0021 TCGA-02-0023 TCGA-02-0026 
        4.73        23.18        20.61        77.65        20.12        24.59 
TCGA-02-0027 TCGA-02-0039 TCGA-02-0048 TCGA-02-0051 TCGA-02-0057 TCGA-02-0058 
       12.16        10.52         3.22        15.09        19.86         8.35 
TCGA-02-0059 TCGA-02-0060 TCGA-02-0074 TCGA-02-0080 TCGA-02-0086 TCGA-02-0089 
        9.57         6.02        10.19        89.72         8.81        16.96 
TCGA-02-0106 TCGA-02-0113 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0281 
       11.67        92.65        15.65        48.95        16.54         3.98 
TCGA-02-0289 TCGA-02-0317 TCGA-02-0324 TCGA-02-0325 TCGA-02-0330 TCGA-02-0422 
       14.20        12.23         7.73        10.62        15.91        14.50 
TCGA-02-0430 TCGA-02-0432 TCGA-02-2466 TCGA-02-2483 TCGA-06-0124 TCGA-06-0125 
       10.55        47.11        16.80        15.32        20.38        47.61 
TCGA-06-0130 TCGA-06-0138 TCGA-06-0141 TCGA-06-0142 TCGA-06-0155 TCGA-06-0162 
       12.95        24.23        10.29         2.20        10.45         3.42 
TCGA-06-0166 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0209 TCGA-06-0214 
        5.85        69.90        73.84        27.22         7.63        15.02 
TCGA-06-0216 TCGA-06-0219 TCGA-06-0644 TCGA-06-0646 TCGA-06-0649 TCGA-06-0750 
       24.16         0.72        12.62         5.75         2.10         0.92 
TCGA-06-0878 TCGA-06-0882 TCGA-06-1084 TCGA-06-1087 TCGA-06-1806 TCGA-06-2557 
        7.17        20.78        23.93         4.04        15.32         1.08 
TCGA-06-2561 TCGA-06-5408 TCGA-06-5410 TCGA-06-5413 TCGA-06-5415 TCGA-06-5416 
       17.65        11.74         3.55         8.81         8.55         6.71 
TCGA-06-5856 TCGA-06-5859 TCGA-06-6390 TCGA-06-6694 TCGA-06-6699 TCGA-06-A5U1 
        3.75         4.57         5.39         7.36         1.55         1.87 
TCGA-06-A6S1 TCGA-08-0246 TCGA-08-0353 TCGA-08-0355 TCGA-08-0356 TCGA-08-0358 
        2.56         4.18         8.42        24.56        31.10        22.29 
TCGA-08-0375 TCGA-08-0380 TCGA-08-0392 TCGA-08-0510 TCGA-08-0512 TCGA-08-0517 
       12.23        14.93         0.72         4.27        42.15        58.68 
TCGA-08-0525 TCGA-12-0615 TCGA-12-0616 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 
       15.98        15.35        14.73         7.59        94.78         0.10 
TCGA-12-0691 TCGA-12-0692 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0780 
       12.13         3.65        28.41        15.06        53.85        14.86 
TCGA-12-0822 TCGA-12-1089 TCGA-12-1091 TCGA-12-1093 TCGA-12-1095 TCGA-12-1099 
       23.51         5.82        33.21        15.98        15.85         4.14 
TCGA-12-1602 TCGA-12-3646 TCGA-12-3653 TCGA-12-5299 TCGA-14-0736 TCGA-14-0817 
        6.77        44.02        14.53         3.22        15.12         5.39 
TCGA-14-0862 TCGA-14-0865 TCGA-14-1037 TCGA-14-1395 TCGA-14-1402 TCGA-14-1453 
        2.89        16.50        19.30         1.38        32.05         1.15 
TCGA-14-1823 TCGA-14-4157 TCGA-15-0742 TCGA-15-1446 TCGA-16-0846 TCGA-16-0861 
       17.85         3.42        13.78        19.10         3.91         4.31 
TCGA-16-1045 TCGA-16-1047 TCGA-16-1060 TCGA-16-1063 TCGA-19-0962 TCGA-19-1386 
       29.03         4.57         9.14        13.97         0.66         9.07 
TCGA-19-1392 TCGA-19-1789 TCGA-19-2619 TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 
        3.65         3.25         9.67        24.23         7.00         7.04 
TCGA-19-5947 TCGA-19-5952 TCGA-19-5956 TCGA-19-5960 TCGA-19-A6J4 TCGA-26-1439 
        6.64        18.90        22.49        14.96         3.98        13.87 
TCGA-26-1443 TCGA-26-6173 TCGA-27-1832 TCGA-27-1833 TCGA-27-2518 TCGA-27-2521 
        7.13         7.92         9.86        24.23        24.76        10.39 
TCGA-27-2524 TCGA-28-1747 TCGA-28-1750 TCGA-28-1753 TCGA-28-2506 TCGA-28-2509 
        7.59         2.53         8.35         1.22         6.74         4.77 
TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5209 TCGA-28-5213 TCGA-28-5220 
        5.26        14.93        11.28        14.53        31.27        12.76 
TCGA-32-1978 TCGA-32-1980 TCGA-32-1982 TCGA-32-2495 TCGA-32-2615 TCGA-32-4208 
       15.85         1.18         4.67        15.02        15.95        21.14 
TCGA-32-4210 TCGA-32-4211 TCGA-32-4719 TCGA-41-2572 TCGA-41-3392 TCGA-41-4097 
        3.72        12.59        10.85        13.35         0.99         0.20 
TCGA-41-5651 TCGA-4W-AA9T TCGA-74-6573 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 
       15.12        14.76         3.45         3.09         3.65         9.17 
TCGA-76-6282 TCGA-76-6285 TCGA-81-5911 TCGA-OX-A56R TCGA-CS-4944 TCGA-CS-5397 
       17.06         8.35        17.72         5.92        10.62         6.38 
TCGA-CS-6666 TCGA-DB-5280 TCGA-DB-A4XF TCGA-DB-A4XH TCGA-DB-A64O TCGA-DB-A75M 
        8.48        36.56        33.57        31.63        25.48        17.88 
TCGA-DH-A669 TCGA-DH-A66B TCGA-DU-5847 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5872 
       30.21        42.05        18.02         8.45         6.81        17.49 
TCGA-DU-6400 TCGA-DU-6405 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7012 TCGA-DU-7014 
        1.22        19.89         7.73        11.47         6.54       117.40 
TCGA-DU-7298 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-A7T6 TCGA-DU-A7TC TCGA-E1-5307 
       18.94         5.10        23.74        17.98        23.51        57.93 
TCGA-E1-5322 TCGA-FG-5963 TCGA-FG-7636 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A6J3 
      130.78        25.48        17.88        32.61        38.27        22.26 
TCGA-FN-7833 TCGA-HT-7472 TCGA-HT-7475 TCGA-HT-7606 TCGA-HT-7688 TCGA-HT-7689 
       27.52         0.03        17.42        17.29        31.69        14.96 
TCGA-HT-7692 TCGA-HT-7855 TCGA-HT-7884 TCGA-HT-8108 TCGA-HT-8564 TCGA-HT-A4DS 
        2.96        19.23        11.28         2.50        15.72         0.23 
TCGA-HT-A5RB TCGA-HT-A617 TCGA-HT-A619 TCGA-HW-A5KK TCGA-P5-A5EV TCGA-P5-A5EZ 
        0.10        16.14        21.40        12.76         0.23         2.30 
TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72W TCGA-QH-A6CS TCGA-QH-A6CX 
        7.63         0.76         1.28        10.42        19.33        12.23 
TCGA-QH-A870 TCGA-S9-A6TZ TCGA-S9-A6U6 TCGA-S9-A7IX TCGA-S9-A7R3 TCGA-S9-A7R8 
       12.99        28.70        16.08        22.32        99.06        31.59 
TCGA-TM-A7CF TCGA-TM-A84Q TCGA-TQ-A7RW TCGA-VM-A8C8 TCGA-VM-A8CD TCGA-VV-A86M 
       48.39        25.38        26.99        43.04         7.89        16.01 
TCGA-WY-A85B 
       45.80 

$`DEL PEAK 17(6Q26) WILD-TYPE`
TCGA-02-0001 TCGA-02-0006 TCGA-02-0009 TCGA-02-0010 TCGA-02-0011 TCGA-02-0014 
       11.77        18.35        10.59        35.41        20.71        82.59 
TCGA-02-0016 TCGA-02-0024 TCGA-02-0025 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 
       87.06        53.10        42.74        90.58         2.83        14.14 
TCGA-02-0037 TCGA-02-0038 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0052 
        3.62        10.72        18.31         6.87        14.73        12.59 
TCGA-02-0054 TCGA-02-0055 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 
        6.54         2.50        19.73        26.43        28.70        25.05 
TCGA-02-0071 TCGA-02-0075 TCGA-02-0079 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 
        5.49        20.84        27.25        22.72        12.62        51.32 
TCGA-02-0087 TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0107 TCGA-02-0111 
       57.76         3.48        27.02        65.00        17.65        23.18 
TCGA-02-0114 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0285 
       99.98        16.93        17.72        10.75        14.47        13.87 
TCGA-02-0290 TCGA-02-0321 TCGA-02-0326 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 
       15.95         9.90         7.33        25.71         4.37        25.12 
TCGA-02-0338 TCGA-02-0339 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 
       10.59        12.39        11.34         9.27        16.21         3.35 
TCGA-02-2470 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0126 
       12.92        15.45        20.32         2.70         6.15         6.94 
TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 
        3.98        22.72        33.67        25.35        14.30        26.70 
TCGA-06-0139 TCGA-06-0140 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 
       11.90         0.20        11.74         2.33        20.09        17.79 
TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 
       10.09         8.61        19.46        46.59        12.33        13.94 
TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0164 TCGA-06-0165 
        3.19        10.82         9.44        11.80        56.91        10.65 
TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 
       19.66         3.29        13.12         4.47         3.22         4.04 
TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0188 
       91.00         4.18        88.14        20.25         3.65        44.58 
TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 
       15.42        10.42        38.96         4.67         7.40         5.56 
TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 
        0.39         7.66         8.42         7.40        11.84         0.53 
TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 
       19.82        13.64        13.32        20.42        48.69        10.82 
TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 
        9.01         0.26        72.36         4.70         9.57         3.16 
TCGA-06-0414 TCGA-06-0645 TCGA-06-0648 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 
       35.11         5.75         9.80        23.57        14.20        26.40 
TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0875 TCGA-06-0876 
       46.88         7.86         2.70         2.70        43.46        46.19 
TCGA-06-0877 TCGA-06-0879 TCGA-06-0881 TCGA-06-0939 TCGA-06-1086 TCGA-06-1800 
        5.65        40.41        16.57        26.76         6.84        26.79 
TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-2558 TCGA-06-2559 
       11.84        15.32        13.61        33.90        12.49         4.93 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 
       12.56        30.64         5.95        16.64         5.98         4.37 
TCGA-06-2569 TCGA-06-2570 TCGA-06-5411 TCGA-06-5412 TCGA-06-5414 TCGA-06-5418 
        0.43        31.50         8.35         4.54         8.98         2.73 
TCGA-06-5858 TCGA-06-6388 TCGA-06-6389 TCGA-06-6391 TCGA-06-6693 TCGA-06-6695 
        6.15         5.23         7.79         1.48       120.56         8.32 
TCGA-06-6697 TCGA-06-6698 TCGA-06-6700 TCGA-06-6701 TCGA-06-A5U0 TCGA-06-A6S0 
       12.85         4.77         4.77         4.96         4.70         3.12 
TCGA-06-A7TK TCGA-06-A7TL TCGA-08-0244 TCGA-08-0245 TCGA-08-0344 TCGA-08-0345 
        5.39         5.42        22.68        37.84       115.86         1.74 
TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 
        8.42        25.71        12.16         9.80        29.23        65.33 
TCGA-08-0352 TCGA-08-0354 TCGA-08-0357 TCGA-08-0359 TCGA-08-0386 TCGA-08-0389 
        1.28        17.95        37.58         3.39        18.02        15.35 
TCGA-08-0390 TCGA-08-0509 TCGA-08-0514 TCGA-08-0516 TCGA-08-0518 TCGA-08-0520 
       13.97        12.56        11.08        19.59        19.33        10.75 
TCGA-08-0521 TCGA-08-0524 TCGA-08-0529 TCGA-08-0531 TCGA-12-0618 TCGA-12-0619 
        4.80         7.27        18.41         7.56        12.99        34.92 
TCGA-12-0620 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0703 TCGA-12-0773 
       10.45        38.17        25.97        26.66        20.38        43.23 
TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 
        7.63         9.73        14.93        91.76        24.79        18.48 
TCGA-12-0821 TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 
       10.62        27.78        38.76         8.94        20.58       127.59 
TCGA-12-1090 TCGA-12-1092 TCGA-12-1094 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 
        7.59        21.73        12.23         9.11        14.53         3.98 
TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 TCGA-12-3644 TCGA-12-3648 TCGA-12-3649 
       15.65        25.68        14.73        59.77        26.93        15.22 
TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-5295 TCGA-12-5301 TCGA-14-0740 
       10.95        12.69        34.92        14.93         2.04        11.97 
TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 
        0.95         6.21        23.05         2.24        11.24        13.78 
TCGA-14-0812 TCGA-14-0813 TCGA-14-0866 TCGA-14-0867 TCGA-14-0871 TCGA-14-1034 
        3.25         1.35        26.33         2.04        28.93        15.95 
TCGA-14-1043 TCGA-14-1396 TCGA-14-1401 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 
        0.79         1.12         3.75        58.78        23.11         7.10 
TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 
       30.18         0.92        40.96         6.67        12.43         0.99 
TCGA-14-1795 TCGA-14-1821 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 
        1.97        17.79         7.63         5.88         7.17        17.49 
TCGA-14-2555 TCGA-14-3477 TCGA-15-1444 TCGA-15-1447 TCGA-15-1449 TCGA-16-0848 
        7.96         3.78        50.53        53.19        13.28        17.59 
TCGA-16-0849 TCGA-16-0850 TCGA-16-1055 TCGA-16-1056 TCGA-16-1062 TCGA-16-1460 
       26.07        16.37        10.29        14.01        21.24         6.41 
TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 
       11.77        21.90         8.61        14.27         3.39        10.75 
TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 TCGA-19-1390 TCGA-19-1786 TCGA-19-1787 
        5.95        12.95         4.64        25.38         7.17        12.66 
TCGA-19-1791 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 
        0.13         4.87         1.08         7.53         0.16         4.08 
TCGA-19-5950 TCGA-19-5951 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 
       17.19         8.02         4.73        12.10         1.78        14.07 
TCGA-19-5959 TCGA-19-A60I TCGA-19-A6J5 TCGA-26-1438 TCGA-26-1440 TCGA-26-1442 
       16.80        17.79        28.54        10.03         9.73        31.33 
TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 
        9.37         9.40        14.86         5.49         8.88        18.97 
TCGA-26-5139 TCGA-26-6174 TCGA-26-A7UX TCGA-27-1830 TCGA-27-1831 TCGA-27-1834 
        1.58         2.33        19.33         5.06        16.60        40.54 
TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2519 TCGA-27-2523 
       21.30        30.05        14.04        11.51        10.39        16.08 
TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1749 TCGA-28-1751 
        2.86        14.40        15.78         0.20         9.21         7.63 
TCGA-28-1752 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2513 
        8.48         1.55         2.83         0.13         0.66         7.30 
TCGA-28-5208 TCGA-28-5211 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 
       17.88        11.77        23.44        11.01        13.64         5.16 
TCGA-28-5219 TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 
       22.68         5.42        15.39        21.07         0.49         0.10 
TCGA-32-1979 TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 
       19.50        12.69        14.86        16.93        12.23        20.78 
TCGA-32-2616 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4213 TCGA-32-5222 
        7.36         8.84        22.78        25.18        19.86        19.23 
TCGA-41-2571 TCGA-41-2573 TCGA-41-2575 TCGA-41-3393 TCGA-41-3915 TCGA-41-6646 
        0.85         8.94         9.53         4.44        11.84        12.46 
TCGA-4W-AA9S TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 
        4.14        20.91         4.34        14.33         8.22         7.50 
TCGA-76-4925 TCGA-76-4926 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 
        4.80         4.54         2.53        10.78        16.70         3.29 
TCGA-76-6193 TCGA-76-6280 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 
        2.70        11.38        20.98         4.83         5.03         0.23 
TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-87-5896 TCGA-RR-A6KA 
        9.27         7.73         7.79         1.61        26.30         6.28 
TCGA-RR-A6KC TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-5390 
       20.55         4.70         7.69        43.89        18.15        64.64 
TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-6186 TCGA-CS-6188 
       40.18         0.10        21.01         9.96        17.69        23.84 
TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 
       17.95        12.43         7.56         8.02         7.40         6.61 
TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 
      122.73        81.96        75.25        47.93        72.92        50.86 
TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB 
       50.17        44.52        78.28        46.42        18.84        30.21 
TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XG TCGA-DB-A64L TCGA-DB-A64P 
       46.72        39.78        37.45        72.95        24.20        30.12 
TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W 
        5.98        31.40        27.45        27.81        29.23        14.40 
TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 
       18.51        12.10        11.24        30.74        16.18        19.96 
TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A66D TCGA-DH-A66F 
       31.82        30.31        14.40         8.02        27.81        17.19 
TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV 
       17.19        54.25        13.12        13.38         3.45        18.61 
TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5870 TCGA-DU-5871 
       14.56        17.46         6.74        13.38       182.33        18.94 
TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 
       15.16       211.17        52.11        22.42        49.02        75.16 
TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 
       46.06        65.75        87.45         7.04        11.64       133.74 
TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-7007 TCGA-DU-7008 
       16.83        94.52       114.08         7.96        62.96       156.23 
TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 
      138.28        14.99       105.21         8.84        90.77        30.67 
TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7299 TCGA-DU-7300 
       26.30        10.36         7.96        94.32        44.02        62.01 
TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8162 
       25.91        60.30        23.31        41.98         2.76        14.60 
TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 
       20.68        21.40        19.13        16.96        15.48        14.17 
TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW 
       14.24        12.59        15.12         4.96         3.65         5.65 
TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 
       12.20         8.65         2.70        77.98         7.23         5.98 
TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T8 TCGA-DU-A7TA 
       11.41        26.76         7.13        21.30       124.50        77.88 
TCGA-DU-A7TB TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 
       42.31         7.50        44.42         0.56        50.14        67.46 
TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-A7YO 
       41.13        79.99       134.27        78.21        95.57        75.02 
TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 
       32.45        36.82        32.35        14.33         0.23         0.20 
TCGA-FG-5962 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 
       47.77        34.36        36.82        18.77        14.93        24.99 
TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 
       23.97        18.44        15.35        22.55        20.61        20.09 
TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 
       12.95        13.68        14.24        16.01        20.09        14.96 
TCGA-FG-8189 TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J 
       22.52        10.72        18.38        18.71        23.70        14.76 
TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A70Y TCGA-FG-A70Z 
       17.82        16.41        15.02        16.44        28.54        10.78 
TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-HT-7467 
       36.66        48.69        20.45        13.58         5.72         0.10 
TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7473 TCGA-HT-7474 
        6.67        11.54        40.11         0.13        16.54         3.75 
TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 
        6.54        24.26         6.38        40.34        75.19        95.93 
TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 
      106.95       172.77         4.01         5.03        29.85        23.18 
TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 
      122.47         4.57         3.16        22.06        45.99        56.09 
TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 
       57.60         0.23        14.27         0.16        16.24         0.76 
TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7690 TCGA-HT-7691 
       44.68         6.05        42.74         0.10         0.10         0.10 
TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7856 TCGA-HT-7857 
       17.52         6.90        14.53        39.48        39.09         0.23 
TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 
       50.63         0.49        23.61        37.15         0.33         0.13 
TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7902 TCGA-HT-8010 
        3.68         5.33        35.47         3.72        31.43         1.64 
TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 
       16.24         9.40        63.55         0.10        37.87        33.01 
TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8109 TCGA-HT-8110 
       12.23         6.25         0.10         0.46         5.56        13.78 
TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8563 TCGA-HT-A4DV TCGA-HT-A5R5 
        0.23        29.59        34.19        28.27        26.04         0.13 
TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 
       20.22         0.07        27.35         5.33         2.70        16.93 
TCGA-HT-A616 TCGA-HT-A618 TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J 
        1.81        16.83        17.52        17.65         2.43        10.52 
TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 
       15.35        11.05         0.10        29.92        19.89         8.32 
TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7493 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 
       19.23        40.18        35.90         4.31        21.70        21.60 
TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 
       19.59        17.82        20.35        20.81        20.71        19.00 
TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY 
       42.77        14.40        14.40         6.71         1.64         2.37 
TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A72U TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 
        4.11         5.88         0.16        13.25        11.64         0.20 
TCGA-P5-A731 TCGA-P5-A733 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X 
        9.01        13.61        15.16         2.53        12.62        15.85 
TCGA-QH-A65Z TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CY TCGA-QH-A6CZ 
       14.04        14.83        14.53        13.61         2.20         9.17 
TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA 
       10.29        14.53        16.34        16.73         1.91        16.50 
TCGA-QH-A6XC TCGA-QH-A86X TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M 
        5.03        11.08        88.83        94.03        32.65        59.38 
TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 
       30.87         5.46         9.90        28.08         2.07        19.59 
TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX 
       30.67        62.17        87.12        18.77        37.84        34.49 
TCGA-S9-A6TY TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U8 
       31.33        22.95        17.62        23.64        32.61        98.24 
TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG 
       95.93         5.85       106.39        69.50        72.59        80.12 
TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO 
       32.45        84.99        31.10        19.86        15.91        18.61 
TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IY TCGA-S9-A7IZ 
       15.16        14.07        36.13         7.92        23.51         7.13 
TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX 
       20.02         8.19         2.04        17.03        15.06        13.12 
TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R4 TCGA-S9-A7R7 
       28.37        13.02       169.84        10.39        30.05        98.63 
TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA 
       18.71        11.97        49.45        48.33        49.32        34.78 
TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I 
       24.92        16.18        59.05        40.64        30.44        28.08 
TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84R TCGA-TM-A84S 
       24.16        40.83        24.79        33.24        18.61        14.93 
TCGA-TM-A84T TCGA-TQ-A7RH TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CE 
       23.80        15.98        30.08        13.51         0.10        35.93 
TCGA-VM-A8CH TCGA-VV-A829 TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K 
       23.47        37.05        23.21         8.05        51.06        13.32 
TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       43.96        39.88        43.40        46.88        37.71        20.81 

  DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE 
                       0.03                        0.07 
  DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE 
                     130.78                      211.17 
  DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE 
                      12.95                       15.09 
[1] "0.0 - 130.8 (12.9)" "0.1 - 211.2 (15.1)"
[1] "hr=" "1.8"
D49V2, continuous
D49V3, binary
                             cls
clus                            0   1
  DEL PEAK 17(6Q26) MUTATED   178  70
  DEL PEAK 17(6Q26) WILD-TYPE 392 402
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 17(6Q26) MUTATED    178   70
  DEL PEAK 17(6Q26) WILD-TYPE  392  402
                        clus
vv                       DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE
  BRAIN                                        178                         392
  CENTRAL NERVOUS SYSTEM                        70                         402
[1] 2 2
[1] FALSE
D49V4, binary
                             cls
clus                            0   1
  DEL PEAK 17(6Q26) MUTATED   111 137
  DEL PEAK 17(6Q26) WILD-TYPE 319 475
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 17(6Q26) MUTATED    111  137
  DEL PEAK 17(6Q26) WILD-TYPE  319  475
        clus
vv       DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE
  FEMALE                       111                         319
  MALE                         137                         475
[1] 2 2
[1] FALSE
D49V5, continuous
                             vv
clus                          ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  DEL PEAK 17(6Q26) MUTATED            42                             7
  DEL PEAK 17(6Q26) WILD-TYPE         134                            20
                             vv
clus                          OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  DEL PEAK 17(6Q26) MUTATED                 12                16
  DEL PEAK 17(6Q26) WILD-TYPE              106               162
                             vv
clus                          TREATED PRIMARY GBM
  DEL PEAK 17(6Q26) MUTATED                     9
  DEL PEAK 17(6Q26) WILD-TYPE                   9
                             vv
clus                          UNTREATED PRIMARY (DE NOVO) GBM
  DEL PEAK 17(6Q26) MUTATED                               162
  DEL PEAK 17(6Q26) WILD-TYPE                             363
D49V6, multiclass
                                 clus
vv                                DEL PEAK 17(6Q26) MUTATED
  ASTROCYTOMA                                            42
  GLIOBLASTOMA MULTIFORME (GBM)                           7
  OLIGOASTROCYTOMA                                       12
  OLIGODENDROGLIOMA                                      16
  TREATED PRIMARY GBM                                     9
  UNTREATED PRIMARY (DE NOVO) GBM                       162
                                 clus
vv                                DEL PEAK 17(6Q26) WILD-TYPE
  ASTROCYTOMA                                             134
  GLIOBLASTOMA MULTIFORME (GBM)                            20
  OLIGOASTROCYTOMA                                        106
  OLIGODENDROGLIOMA                                       162
  TREATED PRIMARY GBM                                       9
  UNTREATED PRIMARY (DE NOVO) GBM                         363
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D49V7, binary
                             cls
clus                            0   1
  DEL PEAK 17(6Q26) MUTATED   138 110
  DEL PEAK 17(6Q26) WILD-TYPE 336 458
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 17(6Q26) MUTATED    138  110
  DEL PEAK 17(6Q26) WILD-TYPE  336  458
     clus
vv    DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE
  NO                        138                         336
  YES                       110                         458
[1] 2 2
[1] FALSE
                             vv
clus                          AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 17(6Q26) MUTATED                                  1     5
  DEL PEAK 17(6Q26) WILD-TYPE                                0    16
                             vv
clus                          BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 17(6Q26) MUTATED                          19   215
  DEL PEAK 17(6Q26) WILD-TYPE                        45   707
D49V8, multiclass
                                  clus
vv                                 DEL PEAK 17(6Q26) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                         1
  ASIAN                                                    5
  BLACK OR AFRICAN AMERICAN                               19
  WHITE                                                  215
                                  clus
vv                                 DEL PEAK 17(6Q26) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                           0
  ASIAN                                                     16
  BLACK OR AFRICAN AMERICAN                                 45
  WHITE                                                    707
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D49V9, binary
                             cls
clus                            0   1
  DEL PEAK 17(6Q26) MUTATED     6 211
  DEL PEAK 17(6Q26) WILD-TYPE  24 680
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 17(6Q26) MUTATED      6  211
  DEL PEAK 17(6Q26) WILD-TYPE   24  680
                        clus
vv                       DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE
  HISPANIC OR LATINO                             6                          24
  NOT HISPANIC OR LATINO                       211                         680
[1] 2 2
[1] FALSE

Clustering(50) Variable = DEL PEAK 18(8P23.2) MUTATION ANALYSIS
D50V1, survival
                               sevent
clus2                             0   1
  DEL PEAK 18(8P23.2) MUTATED    27  58
  DEL PEAK 18(8P23.2) WILD-TYPE 453 501
  DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE 
                           85                           954 
  DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE 
                           58                           501 
$`DEL PEAK 18(8P23.2) MUTATED`
TCGA-02-0001 TCGA-02-0009 TCGA-02-0025 TCGA-02-0051 TCGA-02-0059 TCGA-02-0060 
       11.77        10.59        42.74        15.09         9.57         6.02 
TCGA-02-0086 TCGA-02-0106 TCGA-02-0111 TCGA-02-0115 TCGA-02-0281 TCGA-02-0324 
        8.81        11.67        23.18        15.65         3.98         7.73 
TCGA-02-0430 TCGA-02-2486 TCGA-06-0159 TCGA-06-0169 TCGA-06-0171 TCGA-06-0195 
       10.55        20.32         9.44         3.29        13.12         7.40 
TCGA-06-0216 TCGA-06-0410 TCGA-06-0743 TCGA-06-5408 TCGA-06-5411 TCGA-06-5413 
       24.16         4.70        26.40        11.74         8.35         8.81 
TCGA-06-6693 TCGA-06-A5U1 TCGA-08-0246 TCGA-08-0392 TCGA-08-0510 TCGA-08-0525 
      120.56         1.87         4.18         0.72         4.27        15.98 
TCGA-12-0691 TCGA-12-0776 TCGA-12-0826 TCGA-12-0827 TCGA-12-1093 TCGA-12-1098 
       12.13         9.73        27.78        38.76        15.98         3.98 
TCGA-12-1598 TCGA-12-3651 TCGA-14-0736 TCGA-14-0862 TCGA-14-1034 TCGA-14-1450 
       15.65        12.69        15.12         2.89        15.95        58.78 
TCGA-14-1794 TCGA-14-1823 TCGA-15-1447 TCGA-16-0846 TCGA-16-1056 TCGA-16-1063 
        0.99        17.85        53.19         3.91        14.01        13.97 
TCGA-19-0960 TCGA-19-1385 TCGA-19-1786 TCGA-26-1439 TCGA-26-5136 TCGA-27-2521 
        8.61        10.75         7.17        13.87        18.97        10.39 
TCGA-27-2524 TCGA-28-1750 TCGA-28-1757 TCGA-28-2502 TCGA-28-2509 TCGA-28-2514 
        7.59         8.35         0.13         0.66         4.77         5.26 
TCGA-28-5204 TCGA-32-4208 TCGA-32-4210 TCGA-32-4719 TCGA-4W-AA9T TCGA-76-4934 
       14.93        21.14         3.72        10.85        14.76         2.53 
TCGA-CS-4943 TCGA-DB-5277 TCGA-DH-5140 TCGA-DH-5142 TCGA-DH-A66B TCGA-DU-5847 
       18.15        50.86        19.96        30.31        42.05        18.02 
TCGA-DU-7006 TCGA-DU-8165 TCGA-DU-A7TC TCGA-DU-A7TJ TCGA-E1-5304 TCGA-E1-A7YV 
       11.47        19.13        23.51         0.56        41.13        32.45 
TCGA-HT-7475 TCGA-HT-7688 TCGA-HT-8564 TCGA-HT-A4DS TCGA-P5-A5F6 TCGA-QH-A6CV 
       17.42        31.69        15.72         0.23         1.28        14.53 
TCGA-S9-A6WM 
       19.86 

$`DEL PEAK 18(8P23.2) WILD-TYPE`
TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0010 TCGA-02-0011 TCGA-02-0014 
        4.73        18.35        23.18        35.41        20.71        82.59 
TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 TCGA-02-0026 
       20.61        87.06        77.65        20.12        53.10        24.59 
TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 
       12.16        90.58         2.83        14.14         3.62        10.72 
TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 TCGA-02-0052 
       10.52        18.31         6.87        14.73         3.22        12.59 
TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 TCGA-02-0058 TCGA-02-0064 TCGA-02-0068 
        6.54         2.50        19.86         8.35        19.73        26.43 
TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 
       28.70        25.05         5.49        10.19        20.84        27.25 
TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0087 TCGA-02-0089 
       89.72        22.72        12.62        51.32        57.76        16.96 
TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0107 TCGA-02-0113 TCGA-02-0114 
        3.48        27.02        65.00        17.65        92.65        99.98 
TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 
       48.95        16.54        16.93        17.72        10.75        14.47 
TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0325 
       13.87        14.20        15.95        12.23         9.90        10.62 
TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 
        7.33        15.91        25.71         4.37        25.12        10.59 
TCGA-02-0339 TCGA-02-0422 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 
       12.39        14.50        47.11        11.34         9.27        16.21 
TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-06-0119 
        3.35        16.80        12.92        15.32        15.45         2.70 
TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 
        6.15        20.38        47.61         6.94         3.98        22.72 
TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 
       33.67        12.95        25.35        14.30        26.70        24.23 
TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 
       11.90         0.20        10.29         2.20        11.74         2.33 
TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 
       20.09        17.79        10.09         8.61        19.46        46.59 
TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0160 
       12.33        13.94        10.45         3.19        10.82        11.80 
TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 TCGA-06-0173 
        3.42        56.91        10.65         5.85        19.66         4.47 
TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 
        3.22         4.04        91.00         4.18        88.14        20.25 
TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 
        3.65        69.90        73.84        27.22        44.58        15.42 
TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 
       10.42        38.96         4.67         5.56         0.39         7.66 
TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 
        8.42         7.63         7.40        11.84         0.53        15.02 
TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 
        0.72        19.82        13.64        13.32        20.42        48.69 
TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0412 TCGA-06-0413 
       10.82         9.01         0.26        72.36         9.57         3.16 
TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 
       35.11        12.62         5.75         5.75         9.80         2.10 
TCGA-06-0650 TCGA-06-0686 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 
       23.57        14.20        46.88         7.86         2.70         2.70 
TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 
        0.92        43.46        46.19         5.65         7.17        40.41 
TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1087 
       16.57        20.78        26.76        23.93         6.84         4.04 
TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-1806 
       26.79        11.84        15.32        13.61        33.90        15.32 
TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 
        1.08        12.49         4.93        17.65        12.56        30.64 
TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 
        5.95        16.64         5.98         4.37         0.43        31.50 
TCGA-06-5410 TCGA-06-5412 TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 
        3.55         4.54         8.98         8.55         6.71         2.73 
TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 
        3.75         6.15         4.57         5.23         7.79         5.39 
TCGA-06-6391 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 
        1.48         7.36         8.32        12.85         4.77         1.55 
TCGA-06-6700 TCGA-06-6701 TCGA-06-A5U0 TCGA-06-A6S0 TCGA-06-A6S1 TCGA-06-A7TK 
        4.77         4.96         4.70         3.12         2.56         5.39 
TCGA-06-A7TL TCGA-08-0244 TCGA-08-0245 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 
        5.42        22.68        37.84       115.86         1.74         8.42 
TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 
       25.71        12.16         9.80        29.23        65.33         1.28 
TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 
        8.42        17.95        24.56        31.10        37.58        22.29 
TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 
        3.39        12.23        14.93        18.02        15.35        13.97 
TCGA-08-0509 TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 
       12.56        42.15        11.08        19.59        58.68        19.33 
TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 
       10.75         4.80         7.27        18.41         7.56        15.35 
TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 
       14.73        12.99        34.92        10.45         7.59        94.78 
TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0692 TCGA-12-0703 
        0.10        38.17        25.97        26.66         3.65        20.38 
TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0778 
       28.41        15.06        53.85        43.23         7.63        14.93 
TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 
       14.86        91.76        24.79        18.48        10.62        23.51 
TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 
        8.94        20.58       127.59         5.82         7.59        33.21 
TCGA-12-1092 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1099 
       21.73        12.23        15.85         9.11        14.53         4.14 
TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 
       25.68        14.73         6.77        59.77        44.02        26.93 
TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 
       15.22        10.95        34.92        14.53        14.93         3.22 
TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 
        2.04        11.97         0.95         6.21        23.05         2.24 
TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 TCGA-14-0865 
       11.24        13.78         3.25         1.35         5.39        16.50 
TCGA-14-0866 TCGA-14-0867 TCGA-14-0871 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 
       26.33         2.04        28.93        19.30         0.79         1.38 
TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 
        1.12         3.75        32.05        23.11         7.10         1.15 
TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1795 
       30.18         0.92        40.96         6.67        12.43         1.97 
TCGA-14-1821 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 
       17.79         7.63         5.88         7.17        17.49         7.96 
TCGA-14-3477 TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 TCGA-15-1449 
        3.78         3.42        13.78        50.53        19.10        13.28 
TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 
       17.59        26.07        16.37         4.31        29.03         4.57 
TCGA-16-1055 TCGA-16-1060 TCGA-16-1062 TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 
       10.29         9.14        21.24         6.41        11.77        21.90 
TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 
        0.66        14.27         3.39         9.07         5.95        12.95 
TCGA-19-1389 TCGA-19-1390 TCGA-19-1392 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 
        4.64        25.38         3.65        12.66         3.25         0.13 
TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 
        9.67         4.87         1.08         7.53         0.16         4.08 
TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 
       24.23         7.00         7.04         6.64        17.19         8.02 
TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 
       18.90         4.73        12.10         1.78        22.49        14.07 
TCGA-19-5959 TCGA-19-5960 TCGA-19-A60I TCGA-19-A6J4 TCGA-19-A6J5 TCGA-26-1438 
       16.80        14.96        17.79         3.98        28.54        10.03 
TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 
        9.73        31.33         7.13         9.37         9.40        14.86 
TCGA-26-5134 TCGA-26-5135 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-26-A7UX 
        5.49         8.88         1.58         7.92         2.33        19.33 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 
        5.06        16.60         9.86        24.23        40.54        21.30 
TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2523 
       30.05        14.04        11.51        24.76        10.39        16.08 
TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 
        2.86        14.40        15.78         0.20         2.53         9.21 
TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-2506 
        7.63         8.48         1.22         1.55         2.83         6.74 
TCGA-28-2513 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 
        7.30        11.28        17.88        14.53        11.77        31.27 
TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 
       23.44        11.01        13.64         5.16        22.68        12.76 
TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 
        5.42        15.39        21.07         0.49         0.10        15.85 
TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 
       19.50         1.18         4.67        12.69        14.86        16.93 
TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2616 TCGA-32-2632 
       12.23        20.78        15.02        15.95         7.36         8.84 
TCGA-32-2634 TCGA-32-2638 TCGA-32-4211 TCGA-32-4213 TCGA-32-5222 TCGA-41-2571 
       22.78        25.18        12.59        19.86        19.23         0.85 
TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 
       13.35         8.94         9.53         0.99         4.44        11.84 
TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-4W-AA9S TCGA-74-6573 TCGA-74-6575 
        0.20        15.12        12.46         4.14         3.45        20.91 
TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 
        4.34        14.33         8.22         7.50         4.80         4.54 
TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 
        3.09         3.65         9.17        10.78        16.70         3.29 
TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 
        2.70        11.38        17.06         8.35        20.98         4.83 
TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 
        5.03         0.23         9.27         7.73         7.79         1.61 
TCGA-81-5911 TCGA-87-5896 TCGA-OX-A56R TCGA-RR-A6KA TCGA-RR-A6KC TCGA-CS-4938 
       17.72        26.30         5.92         6.28        20.55         4.70 
TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 
        7.69        43.89        10.62        64.64        40.18         0.10 
TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 
       21.01         9.96         6.38        17.69        23.84        17.95 
TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 
       12.43         8.48         7.56         8.02         7.40         6.61 
TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5278 
      122.73        81.96        75.25        47.93        72.92        50.17 
TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB 
       44.52        36.56        78.28        46.42        18.84        30.21 
TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH 
       46.72        39.78        37.45        33.57        72.95        31.63 
TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S 
       24.20        25.48        30.12         5.98        31.40        27.45 
TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L 
       27.81        29.23        14.40        18.51        12.10        11.24 
TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5141 TCGA-DH-5143 TCGA-DH-5144 
       17.88        30.74        16.18        31.82        14.40         8.02 
TCGA-DH-A669 TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US 
       30.21        27.81        17.19        17.19        54.25        13.12 
TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 
       13.38         3.45        18.61        14.56        17.46         6.74 
TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 
       13.38         8.45         6.81       182.33        18.94        17.49 
TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 
       15.16       211.17        52.11        22.42        49.02        75.16 
TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 
       46.06        65.75         1.22        87.45         7.04        11.64 
TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 
      133.74        19.89        16.83        94.52       114.08         7.96 
TCGA-DU-6542 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 
        7.73        62.96       156.23       138.28        14.99       105.21 
TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7014 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 
        6.54         8.84       117.40        90.77        30.67        26.30 
TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 
       10.36         7.96        94.32        18.94        44.02        62.01 
TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 
       25.91        60.30        23.31        41.98         2.76         5.10 
TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8166 TCGA-DU-8167 
       23.74        14.60        20.68        21.40        16.96        15.48 
TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU 
       14.17        14.24        12.59        15.12         4.96         3.65 
TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 
        5.65        12.20         8.65         2.70        77.98         7.23 
TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 
        5.98        11.41        26.76         7.13        21.30        17.98 
TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TD TCGA-DU-A7TG TCGA-E1-5302 
      124.50        77.88        42.31         7.50        44.42        50.14 
TCGA-E1-5303 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 
       67.46        79.99        57.93       134.27        78.21        95.57 
TCGA-E1-5322 TCGA-E1-A7YO TCGA-E1-A7YW TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 
      130.78        75.02        36.82        32.35        14.33         0.23 
TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 
        0.20        47.77        25.48        34.36        36.82        18.77 
TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 
       14.93        24.99        23.97        18.44        15.35        17.88 
TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 
       22.55        20.61        20.09        12.95        13.68        14.24 
TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT 
       16.01        20.09        14.96        22.52        32.61        38.27 
TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K 
       10.72        18.38        18.71        23.70        14.76        17.82 
TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z 
       16.41        15.02        16.44        22.26        28.54        10.78 
TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 
       36.66        48.69        20.45        13.58         5.72        27.52 
TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 
        0.10         6.67        11.54        40.11         0.13         0.03 
TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 
       16.54         3.75         6.54        24.26         6.38        40.34 
TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 
       75.19        95.93       106.95       172.77         4.01         5.03 
TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 
       29.85        23.18       122.47         4.57        17.29         3.16 
TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 
       22.06        45.99        56.09        57.60         0.23        14.27 
TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 
        0.16        16.24         0.76        44.68         6.05        42.74 
TCGA-HT-7687 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 
        0.10        14.96         0.10         0.10         2.96        17.52 
TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 
        6.90        14.53        39.48        19.23        39.09         0.23 
TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 
       50.63         0.49        23.61        37.15         0.33         0.13 
TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 
        3.68         5.33        35.47         3.72        11.28        31.43 
TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 
        1.64        16.24         9.40        63.55         0.10        37.87 
TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 
       33.01        12.23         6.25         0.10         0.46         2.50 
TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8563 
        5.56        13.78         0.23        29.59        34.19        28.27 
TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB 
       26.04         0.13        20.22         0.07        27.35         0.10 
TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 
        5.33         2.70        16.93         1.81        16.14        16.83 
TCGA-HT-A619 TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K 
       21.40        17.52        17.65         2.43        10.52        15.35 
TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 
       11.05         0.10        29.92        19.89         8.32        19.23 
TCGA-HW-7491 TCGA-HW-7493 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 
       40.18        35.90         4.31        21.70        21.60        19.59 
TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 
       17.82        20.35        12.76        20.81        20.71        19.00 
TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX 
       42.77        14.40        14.40         0.23         6.71         1.64 
TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 
        2.37         2.30         4.11         5.88         7.63         0.76 
TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 
        0.16        10.42        13.25        11.64         0.20         9.01 
TCGA-P5-A733 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z 
       13.61        15.16         2.53        12.62        15.85        14.04 
TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ 
       19.33        14.83        13.61        12.23         2.20         9.17 
TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA 
       10.29        14.53        16.34        16.73         1.91        16.50 
TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO 
        5.03        11.08        12.99        88.83        94.03        32.65 
TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 
       59.38        30.87         5.46         9.90        28.08         2.07 
TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW 
       19.59        30.67        62.17        87.12        18.77        37.84 
TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 
       34.49        31.33        28.70        22.95        17.62        23.64 
TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB 
       32.61        16.08        98.24        95.93         5.85       106.39 
TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL 
       69.50        72.59        80.12        32.45        84.99        31.10 
TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS 
       15.91        18.61        15.16        14.07        36.13         7.92 
TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 
       22.32        23.51         7.13        20.02         8.19         2.04 
TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 
       17.03        15.06        13.12        28.37        13.02       169.84 
TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V 
       10.39        99.06        30.05        98.63        31.59        18.71 
TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF 
       11.97        49.45        48.33        49.32        34.78        48.39 
TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I 
       24.92        16.18        59.05        40.64        30.44        28.08 
TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R 
       24.16        40.83        24.79        33.24        25.38        18.61 
TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RH TCGA-TQ-A7RW TCGA-VM-A8C8 TCGA-VM-A8C9 
       14.93        23.80        15.98        26.99        43.04        30.08 
TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CH TCGA-VV-A829 
       13.51         0.10         7.89        35.93        23.47        37.05 
TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 
       16.01        23.21         8.05        51.06        13.32        43.96 
TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       39.88        43.40        45.80        46.88        37.71        20.81 

  DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE 
                         0.13                          0.03 
  DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE 
                       120.56                        211.17 
  DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE 
                        12.13                         14.93 
[1] "0.1 - 120.6 (12.1)" "0.0 - 211.2 (14.9)"
[1] "hr=" "1.7"
D50V2, continuous
D50V3, binary
                               cls
clus                              0   1
  DEL PEAK 18(8P23.2) MUTATED    66  20
  DEL PEAK 18(8P23.2) WILD-TYPE 504 452
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 18(8P23.2) MUTATED     66   20
  DEL PEAK 18(8P23.2) WILD-TYPE  504  452
                        clus
vv                       DEL PEAK 18(8P23.2) MUTATED
  BRAIN                                           66
  CENTRAL NERVOUS SYSTEM                          20
                        clus
vv                       DEL PEAK 18(8P23.2) WILD-TYPE
  BRAIN                                            504
  CENTRAL NERVOUS SYSTEM                           452
[1] 2 2
[1] FALSE
D50V4, binary
                               cls
clus                              0   1
  DEL PEAK 18(8P23.2) MUTATED    37  49
  DEL PEAK 18(8P23.2) WILD-TYPE 393 563
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 18(8P23.2) MUTATED     37   49
  DEL PEAK 18(8P23.2) WILD-TYPE  393  563
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  FEMALE                          37                           393
  MALE                            49                           563
[1] 2 2
[1] FALSE
D50V5, continuous
                               vv
clus                            ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  DEL PEAK 18(8P23.2) MUTATED            13                             3
  DEL PEAK 18(8P23.2) WILD-TYPE         163                            24
                               vv
clus                            OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  DEL PEAK 18(8P23.2) MUTATED                  4                 3
  DEL PEAK 18(8P23.2) WILD-TYPE              114               175
                               vv
clus                            TREATED PRIMARY GBM
  DEL PEAK 18(8P23.2) MUTATED                     1
  DEL PEAK 18(8P23.2) WILD-TYPE                  17
                               vv
clus                            UNTREATED PRIMARY (DE NOVO) GBM
  DEL PEAK 18(8P23.2) MUTATED                                62
  DEL PEAK 18(8P23.2) WILD-TYPE                             463
D50V6, multiclass
                                 clus
vv                                DEL PEAK 18(8P23.2) MUTATED
  ASTROCYTOMA                                              13
  GLIOBLASTOMA MULTIFORME (GBM)                             3
  OLIGOASTROCYTOMA                                          4
  OLIGODENDROGLIOMA                                         3
  TREATED PRIMARY GBM                                       1
  UNTREATED PRIMARY (DE NOVO) GBM                          62
                                 clus
vv                                DEL PEAK 18(8P23.2) WILD-TYPE
  ASTROCYTOMA                                               163
  GLIOBLASTOMA MULTIFORME (GBM)                              24
  OLIGOASTROCYTOMA                                          114
  OLIGODENDROGLIOMA                                         175
  TREATED PRIMARY GBM                                        17
  UNTREATED PRIMARY (DE NOVO) GBM                           463
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D50V7, binary
                               cls
clus                              0   1
  DEL PEAK 18(8P23.2) MUTATED    53  33
  DEL PEAK 18(8P23.2) WILD-TYPE 421 535
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 18(8P23.2) MUTATED     53   33
  DEL PEAK 18(8P23.2) WILD-TYPE  421  535
     clus
vv    DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  NO                           53                           421
  YES                          33                           535
[1] 2 2
[1] FALSE
                               vv
clus                            AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 18(8P23.2) MUTATED                                  0     6
  DEL PEAK 18(8P23.2) WILD-TYPE                                1    15
                               vv
clus                            BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 18(8P23.2) MUTATED                           5    71
  DEL PEAK 18(8P23.2) WILD-TYPE                        59   851
D50V8, multiclass
                                  clus
vv                                 DEL PEAK 18(8P23.2) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                           0
  ASIAN                                                      6
  BLACK OR AFRICAN AMERICAN                                  5
  WHITE                                                     71
                                  clus
vv                                 DEL PEAK 18(8P23.2) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                             1
  ASIAN                                                       15
  BLACK OR AFRICAN AMERICAN                                   59
  WHITE                                                      851
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D50V9, binary
                               cls
clus                              0   1
  DEL PEAK 18(8P23.2) MUTATED     1  75
  DEL PEAK 18(8P23.2) WILD-TYPE  29 816
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 18(8P23.2) MUTATED      1   75
  DEL PEAK 18(8P23.2) WILD-TYPE   29  816
                        clus
vv                       DEL PEAK 18(8P23.2) MUTATED
  HISPANIC OR LATINO                               1
  NOT HISPANIC OR LATINO                          75
                        clus
vv                       DEL PEAK 18(8P23.2) WILD-TYPE
  HISPANIC OR LATINO                                29
  NOT HISPANIC OR LATINO                           816
[1] 2 2
[1] FALSE

Clustering(51) Variable = DEL PEAK 19(8Q24.3) MUTATION ANALYSIS
D51V1, survival
                               sevent
clus2                             0   1
  DEL PEAK 19(8Q24.3) MUTATED    29  46
  DEL PEAK 19(8Q24.3) WILD-TYPE 451 513
  DEL PEAK 19(8Q24.3) MUTATED DEL PEAK 19(8Q24.3) WILD-TYPE 
                           75                           964 
  DEL PEAK 19(8Q24.3) MUTATED DEL PEAK 19(8Q24.3) WILD-TYPE 
                           46                           513 
$`DEL PEAK 19(8Q24.3) MUTATED`
TCGA-02-0001 TCGA-02-0014 TCGA-02-0015 TCGA-02-0024 TCGA-02-0048 TCGA-02-0051 
       11.77        82.59        20.61        53.10         3.22        15.09 
TCGA-02-0070 TCGA-02-0086 TCGA-02-0115 TCGA-02-0281 TCGA-02-0324 TCGA-06-0159 
       25.05         8.81        15.65         3.98         7.73         9.44 
TCGA-06-0171 TCGA-06-0195 TCGA-06-0216 TCGA-06-0221 TCGA-06-0410 TCGA-06-0743 
       13.12         7.40        24.16        19.82         4.70        26.40 
TCGA-06-1087 TCGA-06-5408 TCGA-06-5411 TCGA-06-5413 TCGA-08-0244 TCGA-08-0245 
        4.04        11.74         8.35         8.81        22.68        37.84 
TCGA-08-0246 TCGA-08-0355 TCGA-08-0510 TCGA-08-0525 TCGA-08-0529 TCGA-12-0821 
        4.18        24.56         4.27        15.98        18.41        10.62 
TCGA-12-0826 TCGA-12-1598 TCGA-12-5301 TCGA-14-0736 TCGA-14-1034 TCGA-14-1450 
       27.78        15.65         2.04        15.12        15.95        58.78 
TCGA-14-1794 TCGA-14-1823 TCGA-16-0846 TCGA-19-1388 TCGA-19-2619 TCGA-19-5950 
        0.99        17.85         3.91        12.95         9.67        17.19 
TCGA-26-1439 TCGA-28-1750 TCGA-28-2502 TCGA-28-2509 TCGA-28-2514 TCGA-32-4719 
       13.87         8.35         0.66         4.77         5.26        10.85 
TCGA-41-3915 TCGA-74-6584 TCGA-76-4934 TCGA-DB-5281 TCGA-DB-A64X TCGA-DH-5140 
       11.84         7.50         2.53        78.28        18.51        19.96 
TCGA-DH-A7UU TCGA-DU-7006 TCGA-DU-7301 TCGA-DU-8165 TCGA-DU-A7TJ TCGA-FG-5965 
        3.45        11.47        25.91        19.13         0.56        36.82 
TCGA-FG-8185 TCGA-FG-A4MY TCGA-FG-A70Y TCGA-HT-7610 TCGA-HT-7879 TCGA-HT-8111 
       14.24        23.70        28.54        56.09         3.68         0.23 
TCGA-HT-8564 TCGA-HT-A4DS TCGA-HW-8321 TCGA-P5-A5F6 TCGA-QH-A6CV TCGA-S9-A6WM 
       15.72         0.23        19.59         1.28        14.53        19.86 
TCGA-VM-A8C8 TCGA-WY-A859 TCGA-WY-A85E 
       43.04        39.88        20.81 

$`DEL PEAK 19(8Q24.3) WILD-TYPE`
TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 TCGA-02-0011 
        4.73        18.35        23.18        10.59        35.41        20.71 
TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 
       87.06        77.65        20.12        42.74        24.59        12.16 
TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 
       90.58         2.83        14.14         3.62        10.72        10.52 
TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 
       18.31         6.87        14.73        12.59         6.54         2.50 
TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 
       19.86         8.35         9.57         6.02        19.73        26.43 
TCGA-02-0069 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 
       28.70         5.49        10.19        20.84        27.25        89.72 
TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 
       22.72        12.62        51.32        57.76        16.96         3.48 
TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 
       27.02        65.00        11.67        17.65        23.18        92.65 
TCGA-02-0114 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 
       99.98        48.95        16.54        16.93        17.72        10.75 
TCGA-02-0271 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 
       14.47        13.87        14.20        15.95        12.23         9.90 
TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 
       10.62         7.33        15.91        25.71         4.37        25.12 
TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 
       10.59        12.39        14.50        10.55        47.11        11.34 
TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 
        9.27        16.21         3.35        16.80        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 
       15.45        20.32         2.70         6.15        20.38        47.61 
TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 
        6.94         3.98        22.72        33.67        12.95        25.35 
TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 
       14.30        26.70        24.23        11.90         0.20        10.29 
TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 
        2.20        11.74         2.33        20.09        17.79        10.09 
TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 
        8.61        19.46        46.59        12.33        13.94        10.45 
TCGA-06-0157 TCGA-06-0158 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 
        3.19        10.82        11.80         3.42        56.91        10.65 
TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 
        5.85        19.66         3.29         4.47         3.22         4.04 
TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 
       91.00         4.18        88.14        20.25         3.65        69.90 
TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 
       73.84        27.22        44.58        15.42        10.42        38.96 
TCGA-06-0194 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 
        4.67         5.56         0.39         7.66         8.42         7.63 
TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0219 TCGA-06-0237 
        7.40        11.84         0.53        15.02         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 
       13.32        20.42        48.69        10.82         9.01         0.26 
TCGA-06-0409 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 
       72.36         9.57         3.16        35.11        12.62         5.75 
TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0744 
        5.75         9.80         2.10        23.57        14.20        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1084 TCGA-06-1086 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 
       23.93         6.84        26.79        11.84        15.32        13.61 
TCGA-06-1805 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       33.90        15.32         1.08        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 
       12.56        30.64         5.95        16.64         5.98         4.37 
TCGA-06-2569 TCGA-06-2570 TCGA-06-5410 TCGA-06-5412 TCGA-06-5414 TCGA-06-5415 
        0.43        31.50         3.55         4.54         8.98         8.55 
TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 
        6.71         2.73         3.75         6.15         4.57         5.23 
TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 
        7.79         5.39         1.48       120.56         7.36         8.32 
TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-06-A5U0 
       12.85         4.77         1.55         4.77         4.96         4.70 
TCGA-06-A5U1 TCGA-06-A6S0 TCGA-06-A6S1 TCGA-06-A7TK TCGA-06-A7TL TCGA-08-0344 
        1.87         3.12         2.56         5.39         5.42       115.86 
TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 
        1.74         8.42        25.71        12.16         9.80        29.23 
TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0356 TCGA-08-0357 
       65.33         1.28         8.42        17.95        31.10        37.58 
TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 
       22.29         3.39        12.23        14.93        18.02        15.35 
TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 
       13.97         0.72        12.56        42.15        11.08        19.59 
TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0531 
       58.68        19.33        10.75         4.80         7.27         7.56 
TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0654 
       15.35        14.73        12.99        34.92        10.45         7.59 
TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 
       94.78         0.10        38.17        25.97        26.66        12.13 
TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 
        3.65        20.38        28.41        15.06        53.85        43.23 
TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 
        7.63         9.73        14.93        14.86        91.76        24.79 
TCGA-12-0820 TCGA-12-0822 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 
       18.48        23.51        38.76         8.94        20.58       127.59 
TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 
        5.82         7.59        33.21        21.73        15.98        12.23 
TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 TCGA-12-1599 
       15.85         9.11        14.53         3.98         4.14        25.68 
TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 
       14.73         6.77        59.77        44.02        26.93        15.22 
TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 
       10.95        12.69        34.92        14.53        14.93         3.22 
TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 
       11.97         0.95         6.21        23.05         2.24        11.24 
TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0865 
       13.78         3.25         1.35         5.39         2.89        16.50 
TCGA-14-0866 TCGA-14-0867 TCGA-14-0871 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 
       26.33         2.04        28.93        19.30         0.79         1.38 
TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 
        1.12         3.75        32.05        23.11         7.10         1.15 
TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1795 
       30.18         0.92        40.96         6.67        12.43         1.97 
TCGA-14-1821 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 
       17.79         7.63         5.88         7.17        17.49         7.96 
TCGA-14-3477 TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 TCGA-15-1447 
        3.78         3.42        13.78        50.53        19.10        53.19 
TCGA-15-1449 TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 
       13.28        17.59        26.07        16.37         4.31        29.03 
TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 
        4.57        10.29        14.01         9.14        21.24        13.97 
TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 
        6.41        11.77        21.90         8.61         0.66        14.27 
TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1389 TCGA-19-1390 
        3.39        10.75         9.07         5.95         4.64        25.38 
TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2620 
        3.65         7.17        12.66         3.25         0.13         4.87 
TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 
        1.08         7.53         0.16         4.08        24.23         7.00 
TCGA-19-4065 TCGA-19-5947 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 
        7.04         6.64         8.02        18.90         4.73        12.10 
TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-19-A60I 
        1.78        22.49        14.07        16.80        14.96        17.79 
TCGA-19-A6J4 TCGA-19-A6J5 TCGA-26-1438 TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 
        3.98        28.54        10.03         9.73        31.33         7.13 
TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 
        9.37         9.40        14.86         5.49         8.88        18.97 
TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-26-A7UX TCGA-27-1830 TCGA-27-1831 
        1.58         7.92         2.33        19.33         5.06        16.60 
TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 
        9.86        24.23        40.54        21.30        30.05        14.04 
TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 
       11.51        24.76        10.39        10.39        16.08         7.59 
TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 
        2.86        14.40        15.78         0.20         2.53         9.21 
TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 
        7.63         8.48         1.22         1.55         2.83         0.13 
TCGA-28-2506 TCGA-28-2513 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 
        6.74         7.30        14.93        11.28        17.88        14.53 
TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 
       11.77        31.27        23.44        11.01        13.64         5.16 
TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 
       22.68        12.76         5.42        15.39        21.07         0.49 
TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 
        0.10        15.85        19.50         1.18         4.67        12.69 
TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 
       14.86        16.93        12.23        20.78        15.02        15.95 
TCGA-32-2616 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4210 
        7.36         8.84        22.78        25.18        21.14         3.72 
TCGA-32-4211 TCGA-32-4213 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 
       12.59        19.86        19.23         0.85        13.35         8.94 
TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 
        9.53         0.99         4.44         0.20        15.12        12.46 
TCGA-4W-AA9S TCGA-4W-AA9T TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 
        4.14        14.76         3.45        20.91         4.34        14.33 
TCGA-74-6581 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 
        8.22         4.80         4.54         3.09         3.65         9.17 
TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 
       10.78        16.70         3.29         2.70        11.38        17.06 
TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 
        8.35        20.98         4.83         5.03         0.23         9.27 
TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 TCGA-OX-A56R 
        7.73         7.79         1.61        17.72        26.30         5.92 
TCGA-RR-A6KA TCGA-RR-A6KC TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 
        6.28        20.55         4.70         7.69        43.89        18.15 
TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 
       10.62        64.64        40.18         0.10        21.01         9.96 
TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 
        6.38        17.69        23.84        17.95        12.43         8.48 
TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 
        7.56         8.02         7.40         6.61       122.73        81.96 
TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 
       75.25        47.93        72.92        50.86        50.17        44.52 
TCGA-DB-5280 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD 
       36.56        46.42        18.84        30.21        46.72        39.78 
TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O 
       37.45        33.57        72.95        31.63        24.20        25.48 
TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V 
       30.12         5.98        31.40        27.45        27.81        29.23 
TCGA-DB-A64W TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P 
       14.40        12.10        11.24        17.88        30.74        16.18 
TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B 
       31.82        30.31        14.40         8.02        30.21        42.05 
TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT 
       27.81        17.19        17.19        54.25        13.12        13.38 
TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 
       18.61        18.02        14.56        17.46         6.74        13.38 
TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 
        8.45         6.81       182.33        18.94        17.49        15.16 
TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 
      211.17        52.11        22.42        49.02        75.16        46.06 
TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 
       65.75         1.22        87.45         7.04        11.64       133.74 
TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 
       19.89        16.83        94.52       114.08         7.96         7.73 
TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 
       62.96       156.23       138.28        14.99       105.21         6.54 
TCGA-DU-7013 TCGA-DU-7014 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 
        8.84       117.40        90.77        30.67        26.30        10.36 
TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7302 
        7.96        94.32        18.94        44.02        62.01        60.30 
TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 
       23.31        41.98         2.76         5.10        23.74        14.60 
TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP 
       20.68        21.40        16.96        15.48        14.17        14.24 
TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY 
       12.59        15.12         4.96         3.65         5.65        12.20 
TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K 
        8.65         2.70        77.98         7.23         5.98        11.41 
TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA 
       26.76         7.13        21.30        17.98       124.50        77.88 
TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-E1-5302 TCGA-E1-5303 
       42.31        23.51         7.50        44.42        50.14        67.46 
TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 
       41.13        79.99        57.93       134.27        78.21        95.57 
TCGA-E1-5322 TCGA-E1-A7YO TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7Z6 TCGA-EZ-7264 
      130.78        75.02        32.45        36.82        32.35        14.33 
TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-6688 
        0.23         0.20        47.77        25.48        34.36        18.77 
TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 
       14.93        24.99        23.97        18.44        15.35        17.88 
TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8186 
       22.55        20.61        20.09        12.95        13.68        16.01 
TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU 
       20.09        14.96        22.52        32.61        38.27        10.72 
TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ 
       18.38        18.71        14.76        17.82        16.41        15.02 
TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 
       16.44        22.26        10.78        36.66        48.69        20.45 
TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 
       13.58         5.72        27.52         0.10         6.67        11.54 
TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 
       40.11         0.13         0.03        16.54         3.75        17.42 
TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 
        6.54        24.26         6.38        40.34        75.19        95.93 
TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 
      106.95       172.77         4.01         5.03        29.85        23.18 
TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 
      122.47         4.57        17.29         3.16        22.06        45.99 
TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 
       57.60         0.23        14.27         0.16        16.24         0.76 
TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 
       44.68         6.05        42.74         0.10        31.69        14.96 
TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 
        0.10         0.10         2.96        17.52         6.90        14.53 
TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 
       39.48        19.23        39.09         0.23        50.63         0.49 
TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7880 TCGA-HT-7881 
       23.61        37.15         0.33         0.13         5.33        35.47 
TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 
        3.72        11.28        31.43         1.64        16.24         9.40 
TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 
       63.55         0.10        37.87        33.01        12.23         6.25 
TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8113 
        0.10         0.46         2.50         5.56        13.78        29.59 
TCGA-HT-8114 TCGA-HT-8563 TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 
       34.19        28.27        26.04         0.13        20.22         0.07 
TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 
       27.35         0.10         5.33         2.70        16.93         1.81 
TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H 
       16.14        16.83        21.40        17.52        17.65         2.43 
TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 
       10.52        15.35        11.05         0.10        29.92        19.89 
TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7493 TCGA-HW-7495 TCGA-HW-8319 
        8.32        19.23        40.18        35.90         4.31        21.70 
TCGA-HW-8320 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM 
       21.60        17.82        20.35        12.76        20.81        20.71 
TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW 
       19.00        42.77        14.40        14.40         0.23         6.71 
TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 
        1.64         2.37         2.30         4.11         5.88         7.63 
TCGA-P5-A5F4 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 
        0.76         0.16        10.42        13.25        11.64         0.20 
TCGA-P5-A731 TCGA-P5-A733 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X 
        9.01        13.61        15.16         2.53        12.62        15.85 
TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY 
       14.04        19.33        14.83        13.61        12.23         2.20 
TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 
        9.17        10.29        14.53        16.34        16.73         1.91 
TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML 
       16.50         5.03        11.08        12.99        88.83        94.03 
TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 
       32.65        59.38        30.87         5.46         9.90        28.08 
TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV 
        2.07        19.59        30.67        62.17        87.12        18.77 
TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 
       37.84        34.49        31.33        28.70        22.95        17.62 
TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA 
       23.64        32.61        16.08        98.24        95.93         5.85 
TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI 
      106.39        69.50        72.59        80.12        32.45        84.99 
TCGA-S9-A6WL TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ 
       31.10        15.91        18.61        15.16        14.07        36.13 
TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 
        7.92        22.32        23.51         7.13        20.02         8.19 
TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ 
        2.04        17.03        15.06        13.12        28.37        13.02 
TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 
      169.84        10.39        99.06        30.05        98.63        31.59 
TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA 
       18.71        11.97        49.45        48.33        49.32        34.78 
TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H 
       48.39        24.92        16.18        59.05        40.64        30.44 
TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q 
       28.08        24.16        40.83        24.79        33.24        25.38 
TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RH TCGA-TQ-A7RW TCGA-VM-A8C9 
       18.61        14.93        23.80        15.98        26.99        30.08 
TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CH TCGA-VV-A829 
       13.51         0.10         7.89        35.93        23.47        37.05 
TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 
       16.01        23.21         8.05        51.06        13.32        43.96 
TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D 
       43.40        45.80        46.88        37.71 

  DEL PEAK 19(8Q24.3) MUTATED DEL PEAK 19(8Q24.3) WILD-TYPE 
                         0.23                          0.03 
  DEL PEAK 19(8Q24.3) MUTATED DEL PEAK 19(8Q24.3) WILD-TYPE 
                        82.59                        211.17 
  DEL PEAK 19(8Q24.3) MUTATED DEL PEAK 19(8Q24.3) WILD-TYPE 
                       14.240                        14.845 
[1] "0.2 - 82.6 (14.2)"  "0.0 - 211.2 (14.8)"
[1] "hr=" "1.4"
D51V2, continuous
D51V3, binary
                               cls
clus                              0   1
  DEL PEAK 19(8Q24.3) MUTATED    51  24
  DEL PEAK 19(8Q24.3) WILD-TYPE 519 448
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 19(8Q24.3) MUTATED     51   24
  DEL PEAK 19(8Q24.3) WILD-TYPE  519  448
                        clus
vv                       DEL PEAK 19(8Q24.3) MUTATED
  BRAIN                                           51
  CENTRAL NERVOUS SYSTEM                          24
                        clus
vv                       DEL PEAK 19(8Q24.3) WILD-TYPE
  BRAIN                                            519
  CENTRAL NERVOUS SYSTEM                           448
[1] 2 2
[1] FALSE
D51V4, binary
                               cls
clus                              0   1
  DEL PEAK 19(8Q24.3) MUTATED    35  40
  DEL PEAK 19(8Q24.3) WILD-TYPE 395 572
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 19(8Q24.3) MUTATED     35   40
  DEL PEAK 19(8Q24.3) WILD-TYPE  395  572
        clus
vv       DEL PEAK 19(8Q24.3) MUTATED DEL PEAK 19(8Q24.3) WILD-TYPE
  FEMALE                          35                           395
  MALE                            40                           572
[1] 2 2
[1] FALSE
D51V5, continuous
                               vv
clus                            ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  DEL PEAK 19(8Q24.3) MUTATED            10                             1
  DEL PEAK 19(8Q24.3) WILD-TYPE         166                            26
                               vv
clus                            OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  DEL PEAK 19(8Q24.3) MUTATED                  9                 5
  DEL PEAK 19(8Q24.3) WILD-TYPE              109               173
                               vv
clus                            TREATED PRIMARY GBM
  DEL PEAK 19(8Q24.3) MUTATED                     2
  DEL PEAK 19(8Q24.3) WILD-TYPE                  16
                               vv
clus                            UNTREATED PRIMARY (DE NOVO) GBM
  DEL PEAK 19(8Q24.3) MUTATED                                48
  DEL PEAK 19(8Q24.3) WILD-TYPE                             477
D51V6, multiclass
                                 clus
vv                                DEL PEAK 19(8Q24.3) MUTATED
  ASTROCYTOMA                                              10
  GLIOBLASTOMA MULTIFORME (GBM)                             1
  OLIGOASTROCYTOMA                                          9
  OLIGODENDROGLIOMA                                         5
  TREATED PRIMARY GBM                                       2
  UNTREATED PRIMARY (DE NOVO) GBM                          48
                                 clus
vv                                DEL PEAK 19(8Q24.3) WILD-TYPE
  ASTROCYTOMA                                               166
  GLIOBLASTOMA MULTIFORME (GBM)                              26
  OLIGOASTROCYTOMA                                          109
  OLIGODENDROGLIOMA                                         173
  TREATED PRIMARY GBM                                        16
  UNTREATED PRIMARY (DE NOVO) GBM                           477
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D51V7, binary
                               cls
clus                              0   1
  DEL PEAK 19(8Q24.3) MUTATED    45  30
  DEL PEAK 19(8Q24.3) WILD-TYPE 429 538
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 19(8Q24.3) MUTATED     45   30
  DEL PEAK 19(8Q24.3) WILD-TYPE  429  538
     clus
vv    DEL PEAK 19(8Q24.3) MUTATED DEL PEAK 19(8Q24.3) WILD-TYPE
  NO                           45                           429
  YES                          30                           538
[1] 2 2
[1] FALSE
                               vv
clus                            AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 19(8Q24.3) MUTATED                                  0     3
  DEL PEAK 19(8Q24.3) WILD-TYPE                                1    18
                               vv
clus                            BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 19(8Q24.3) MUTATED                           5    60
  DEL PEAK 19(8Q24.3) WILD-TYPE                        59   862
D51V8, multiclass
                                  clus
vv                                 DEL PEAK 19(8Q24.3) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                           0
  ASIAN                                                      3
  BLACK OR AFRICAN AMERICAN                                  5
  WHITE                                                     60
                                  clus
vv                                 DEL PEAK 19(8Q24.3) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                             1
  ASIAN                                                       18
  BLACK OR AFRICAN AMERICAN                                   59
  WHITE                                                      862
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D51V9, binary
                               cls
clus                              0   1
  DEL PEAK 19(8Q24.3) MUTATED     3  61
  DEL PEAK 19(8Q24.3) WILD-TYPE  27 830
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 19(8Q24.3) MUTATED      3   61
  DEL PEAK 19(8Q24.3) WILD-TYPE   27  830
                        clus
vv                       DEL PEAK 19(8Q24.3) MUTATED
  HISPANIC OR LATINO                               3
  NOT HISPANIC OR LATINO                          61
                        clus
vv                       DEL PEAK 19(8Q24.3) WILD-TYPE
  HISPANIC OR LATINO                                27
  NOT HISPANIC OR LATINO                           830
[1] 2 2
[1] FALSE

Clustering(52) Variable = DEL PEAK 20(9P21.3) MUTATION ANALYSIS
D52V1, survival
                               sevent
clus2                             0   1
  DEL PEAK 20(9P21.3) MUTATED   179 393
  DEL PEAK 20(9P21.3) WILD-TYPE 301 166
  DEL PEAK 20(9P21.3) MUTATED DEL PEAK 20(9P21.3) WILD-TYPE 
                          572                           467 
  DEL PEAK 20(9P21.3) MUTATED DEL PEAK 20(9P21.3) WILD-TYPE 
                          393                           166 
$`DEL PEAK 20(9P21.3) MUTATED`
TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 
       23.18        10.59        35.41        82.59        20.61        87.06 
TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 TCGA-02-0027 TCGA-02-0037 TCGA-02-0038 
       77.65        20.12        53.10        12.16         3.62        10.72 
TCGA-02-0043 TCGA-02-0047 TCGA-02-0048 TCGA-02-0051 TCGA-02-0054 TCGA-02-0057 
       18.31        14.73         3.22        15.09         6.54        19.86 
TCGA-02-0058 TCGA-02-0064 TCGA-02-0068 TCGA-02-0080 TCGA-02-0083 TCGA-02-0085 
        8.35        19.73        26.43        89.72        22.72        51.32 
TCGA-02-0086 TCGA-02-0089 TCGA-02-0099 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 
        8.81        16.96         3.48        65.00        11.67        17.65 
TCGA-02-0111 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 
       23.18        99.98        15.65        48.95        16.54        16.93 
TCGA-02-0266 TCGA-02-0269 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 
       17.72        10.75         3.98        13.87        14.20        15.95 
TCGA-02-0317 TCGA-02-0321 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0333 
       12.23         9.90        10.62         7.33        15.91         4.37 
TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0446 TCGA-02-0451 
       12.39        14.50        10.55        47.11         9.27        16.21 
TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 
       16.80        12.92        15.32        20.32         2.70         6.15 
TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0132 
       20.38        47.61         6.94         3.98        22.72        25.35 
TCGA-06-0133 TCGA-06-0137 TCGA-06-0139 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 
       14.30        26.70        11.90        10.29         2.20        11.74 
TCGA-06-0145 TCGA-06-0148 TCGA-06-0150 TCGA-06-0151 TCGA-06-0154 TCGA-06-0155 
        2.33        10.09        19.46        46.59        13.94        10.45 
TCGA-06-0158 TCGA-06-0162 TCGA-06-0164 TCGA-06-0166 TCGA-06-0169 TCGA-06-0171 
       10.82         3.42        56.91         5.85         3.29        13.12 
TCGA-06-0173 TCGA-06-0175 TCGA-06-0177 TCGA-06-0179 TCGA-06-0185 TCGA-06-0187 
        4.47         4.04         4.18        20.25        73.84        27.22 
TCGA-06-0188 TCGA-06-0190 TCGA-06-0192 TCGA-06-0201 TCGA-06-0208 TCGA-06-0209 
       44.58        10.42        38.96         0.39         8.42         7.63 
TCGA-06-0210 TCGA-06-0211 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 
        7.40        11.84        15.02        24.16         0.72        19.82 
TCGA-06-0237 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0409 TCGA-06-0410 
       13.64        48.69        10.82         9.01        72.36         4.70 
TCGA-06-0412 TCGA-06-0413 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 
        9.57         3.16        12.62         5.75         5.75         9.80 
TCGA-06-0649 TCGA-06-0650 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 
        2.10        23.57        26.40        46.88         7.86         2.70 
TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 
        0.92        43.46        46.19         5.65         7.17        40.41 
TCGA-06-0882 TCGA-06-1084 TCGA-06-1086 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 
       20.78        23.93         6.84        26.79        11.84        15.32 
TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 
       13.61        15.32         1.08        17.65        12.56        30.64 
TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 TCGA-06-5408 
        5.95        16.64         5.98         4.37         0.43        11.74 
TCGA-06-5410 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5418 
        3.55         4.54         8.81         8.98         8.55         2.73 
TCGA-06-5856 TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6391 TCGA-06-6693 
        3.75         4.57         5.23         7.79         1.48       120.56 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
        7.36         8.32        12.85         1.55         4.77         4.96 
TCGA-06-A5U0 TCGA-06-A5U1 TCGA-06-A6S0 TCGA-06-A6S1 TCGA-06-A7TL TCGA-08-0244 
        4.70         1.87         3.12         2.56         5.42        22.68 
TCGA-08-0246 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0352 
        4.18         1.74         8.42        25.71        12.16         1.28 
TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 
        8.42        17.95        24.56        31.10        37.58        22.29 
TCGA-08-0359 TCGA-08-0375 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 
        3.39        12.23        13.97         0.72        12.56         4.27 
TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 TCGA-08-0525 
       11.08        19.59        58.68        19.33        10.75        15.98 
TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 
       18.41         7.56        15.35        10.45         7.59        94.78 
TCGA-12-0657 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0707 
        0.10        25.97        26.66        12.13         3.65        28.41 
TCGA-12-0775 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0821 
        7.63        14.93        14.86        91.76        24.79        10.62 
TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 
       23.51        27.78        38.76         8.94        20.58       127.59 
TCGA-12-1089 TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 
        5.82        33.21        21.73        15.98        12.23        15.85 
TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 TCGA-12-1599 TCGA-12-1602 TCGA-12-3648 
       14.53         3.98         4.14        25.68         6.77        26.93 
TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 
       15.22        10.95        12.69        34.92        14.53        14.93 
TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 
        3.22         2.04        15.12        11.97         0.95         6.21 
TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 
       23.05         2.24        11.24        13.78         1.35         5.39 
TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 TCGA-14-0871 TCGA-14-1037 TCGA-14-1043 
        2.89        16.50        26.33        28.93        19.30         0.79 
TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1452 TCGA-14-1453 
        1.38         1.12         3.75        32.05         7.10         1.15 
TCGA-14-1455 TCGA-14-1458 TCGA-14-1459 TCGA-14-1795 TCGA-14-1821 TCGA-14-1823 
        0.92         6.67        12.43         1.97        17.79        17.85 
TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-4157 
        7.63         5.88         7.17        17.49         7.96         3.42 
TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 TCGA-15-1447 TCGA-15-1449 TCGA-16-0846 
       13.78        50.53        19.10        53.19        13.28         3.91 
TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 
        4.31        29.03         4.57        10.29        14.01         9.14 
TCGA-16-1062 TCGA-16-1063 TCGA-19-0955 TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 
       21.24        13.97        11.77         8.61         0.66        14.27 
TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 
        3.39        10.75         9.07         5.95        12.95         4.64 
TCGA-19-1390 TCGA-19-1786 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 
       25.38         7.17         3.25         0.13         9.67         4.87 
TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 
        4.08        24.23         7.00         7.04         6.64        17.19 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 
        8.02        18.90         4.73        12.10         1.78        22.49 
TCGA-19-5958 TCGA-19-5959 TCGA-19-A6J4 TCGA-19-A6J5 TCGA-26-1439 TCGA-26-1440 
       14.07        16.80         3.98        28.54        13.87         9.73 
TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5134 TCGA-26-5139 TCGA-26-6174 
       31.33         7.13         9.37         5.49         1.58         2.33 
TCGA-26-A7UX TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 
       19.33         5.06        16.60         9.86        24.23        40.54 
TCGA-27-1836 TCGA-27-1837 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 
       30.05        14.04        10.39        16.08         7.59         2.86 
TCGA-27-2528 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1753 
       15.78         2.53         9.21         8.35         7.63         1.22 
TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 TCGA-28-2513 
        1.55         2.83         0.13         0.66         6.74         7.30 
TCGA-28-2514 TCGA-28-5204 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 
        5.26        14.93        17.88        14.53        11.77        31.27 
TCGA-28-5215 TCGA-28-5216 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 
       11.01        13.64        12.76         5.42        15.39        21.07 
TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1982 TCGA-32-1986 
        0.49         0.10        15.85        19.50         4.67        12.69 
TCGA-32-1991 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2638 TCGA-32-4208 
       16.93        20.78        15.02        15.95        25.18        21.14 
TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2572 
        3.72        12.59        19.86        10.85        19.23        13.35 
TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-4097 TCGA-41-6646 
        8.94         9.53         0.99         4.44         0.20        12.46 
TCGA-4W-AA9S TCGA-4W-AA9T TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 
        4.14        14.76         3.45        20.91         4.34        14.33 
TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 
        8.22         7.50         4.80         4.54         3.09         3.65 
TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6280 
        9.17         2.53        10.78        16.70         3.29        11.38 
TCGA-76-6282 TCGA-76-6285 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6664 
       17.06         8.35         4.83         5.03         0.23         7.79 
TCGA-81-5910 TCGA-87-5896 TCGA-OX-A56R TCGA-RR-A6KA TCGA-RR-A6KC TCGA-CS-4943 
        1.61        26.30         5.92         6.28        20.55        18.15 
TCGA-CS-5393 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 
       40.18        21.01         9.96         6.38        17.69        23.84 
TCGA-CS-6666 TCGA-CS-6670 TCGA-DB-5275 TCGA-DB-5277 TCGA-DB-5279 TCGA-DB-5281 
        8.48         6.61        47.93        50.86        44.52        78.28 
TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XF TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64V 
       30.21        46.72        33.57        31.63        24.20        29.23 
TCGA-DB-A75L TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-A7UR TCGA-DU-5847 TCGA-DU-5851 
       11.24        16.18        19.96        54.25        18.02        17.46 
TCGA-DU-5852 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-6395 TCGA-DU-6397 TCGA-DU-6399 
        6.74         8.45         6.81        49.02        46.06        65.75 
TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6542 
        7.04        11.64        19.89        16.83        94.52         7.73 
TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7012 TCGA-DU-7014 TCGA-DU-7015 TCGA-DU-7018 
       11.47        62.96         6.54       117.40        90.77        30.67 
TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7298 TCGA-DU-7301 TCGA-DU-7302 
       26.30        10.36         7.96        18.94        25.91        60.30 
TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8168 
       23.31        41.98         5.10        23.74        14.60        14.17 
TCGA-DU-A5TY TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A7T6 
       12.20         7.23         5.98        11.41        26.76        17.98 
TCGA-DU-A7TA TCGA-DU-A7TD TCGA-DU-A7TJ TCGA-E1-5304 TCGA-E1-5307 TCGA-E1-A7YV 
       77.88         7.50         0.56        41.13        57.93        32.45 
TCGA-EZ-7264 TCGA-F6-A8O4 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6690 
       14.33         0.20        25.48        34.36        36.82        24.99 
TCGA-FG-6692 TCGA-FG-7636 TCGA-FG-8185 TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX 
       18.44        17.88        14.24        10.72        18.38        18.71 
TCGA-FG-A4MY TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A711 TCGA-FG-A87N 
       23.70        22.26        28.54        10.78        48.69        13.58 
TCGA-FG-A87Q TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7475 TCGA-HT-7476 
        5.72        11.54        40.11         0.13        17.42         6.54 
TCGA-HT-7477 TCGA-HT-7606 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7692 
       24.26        17.29         0.10        31.69        14.96         2.96 
TCGA-HT-7855 TCGA-HT-7857 TCGA-HT-7860 TCGA-HT-7902 TCGA-HT-8011 TCGA-HT-8104 
       19.23         0.23         0.49        31.43        16.24        12.23 
TCGA-HT-8108 TCGA-HT-A4DS TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 
        2.50         0.23        27.35         0.10         5.33         2.70 
TCGA-HT-A74J TCGA-HW-7490 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8322 TCGA-HW-A5KK 
       10.52        19.23        21.70        21.60        17.82        12.76 
TCGA-HW-A5KM TCGA-IK-7675 TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EZ TCGA-P5-A5F2 
       20.71        19.00        14.40         0.23         2.30         7.63 
TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72Z TCGA-QH-A6CV TCGA-QH-A6CX 
        0.76         1.28         0.16        11.64        14.53        12.23 
TCGA-QH-A6CZ TCGA-QH-A6X9 TCGA-QH-A6XC TCGA-RY-A83Z TCGA-S9-A6TS TCGA-S9-A6TW 
        9.17         1.91         5.03         9.90        62.17        37.84 
TCGA-S9-A6U0 TCGA-S9-A6UA TCGA-S9-A6WH TCGA-S9-A6WM TCGA-S9-A7IS TCGA-S9-A7IX 
       22.95         5.85        32.45        19.86         7.92        22.32 
TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7R1 TCGA-S9-A7R3 TCGA-S9-A7R8 TCGA-S9-A89Z 
        7.13        20.02       169.84        99.06        31.59        11.97 
TCGA-TM-A7CF TCGA-TM-A84H TCGA-TM-A84J TCGA-TQ-A7RH TCGA-TQ-A7RW TCGA-VM-A8C8 
       48.39        30.44        24.16        15.98        26.99        43.04 
TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VV-A86M TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 
        0.10         7.89        16.01        51.06        13.32        43.96 
TCGA-WY-A859 TCGA-WY-A85B 
       39.88        45.80 

$`DEL PEAK 20(9P21.3) WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0011 TCGA-02-0025 TCGA-02-0026 
       11.77         4.73        18.35        20.71        42.74        24.59 
TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0039 TCGA-02-0046 TCGA-02-0052 
       90.58         2.83        14.14        10.52         6.87        12.59 
TCGA-02-0055 TCGA-02-0059 TCGA-02-0060 TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 
        2.50         9.57         6.02        28.70        25.05         5.49 
TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0084 TCGA-02-0087 TCGA-02-0102 
       10.19        20.84        27.25        12.62        57.76        27.02 
TCGA-02-0113 TCGA-02-0271 TCGA-02-0324 TCGA-02-0332 TCGA-02-0337 TCGA-02-0338 
       92.65        14.47         7.73        25.71        25.12        10.59 
TCGA-02-0440 TCGA-02-0456 TCGA-02-2485 TCGA-06-0129 TCGA-06-0130 TCGA-06-0138 
       11.34         3.35        15.45        33.67        12.95        24.23 
TCGA-06-0140 TCGA-06-0146 TCGA-06-0147 TCGA-06-0149 TCGA-06-0152 TCGA-06-0157 
        0.20        20.09        17.79         8.61        12.33         3.19 
TCGA-06-0159 TCGA-06-0160 TCGA-06-0165 TCGA-06-0168 TCGA-06-0174 TCGA-06-0176 
        9.44        11.80        10.65        19.66         3.22        91.00 
TCGA-06-0178 TCGA-06-0182 TCGA-06-0184 TCGA-06-0189 TCGA-06-0194 TCGA-06-0195 
       88.14         3.65        69.90        15.42         4.67         7.40 
TCGA-06-0197 TCGA-06-0206 TCGA-06-0213 TCGA-06-0238 TCGA-06-0240 TCGA-06-0402 
        5.56         7.66         0.53        13.32        20.42         0.26 
TCGA-06-0414 TCGA-06-0686 TCGA-06-0749 TCGA-06-0881 TCGA-06-0939 TCGA-06-1087 
       35.11        14.20         2.70        16.57        26.76         4.04 
TCGA-06-1805 TCGA-06-2558 TCGA-06-2559 TCGA-06-2570 TCGA-06-5411 TCGA-06-5416 
       33.90        12.49         4.93        31.50         8.35         6.71 
TCGA-06-5858 TCGA-06-6390 TCGA-06-6698 TCGA-06-A7TK TCGA-08-0245 TCGA-08-0344 
        6.15         5.39         4.77         5.39        37.84       115.86 
TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 
        9.80        29.23        65.33        14.93        18.02        15.35 
TCGA-08-0512 TCGA-08-0521 TCGA-08-0524 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
       42.15         4.80         7.27        14.73        12.99        34.92 
TCGA-12-0662 TCGA-12-0703 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0776 
       38.17        20.38        15.06        53.85        43.23         9.73 
TCGA-12-0820 TCGA-12-1090 TCGA-12-1096 TCGA-12-1598 TCGA-12-1600 TCGA-12-3644 
       18.48         7.59         9.11        15.65        14.73        59.77 
TCGA-12-3646 TCGA-14-0812 TCGA-14-0867 TCGA-14-1034 TCGA-14-1450 TCGA-14-1451 
       44.02         3.25         2.04        15.95        58.78        23.11 
TCGA-14-1454 TCGA-14-1456 TCGA-14-1794 TCGA-14-3477 TCGA-16-0848 TCGA-16-0849 
       30.18        40.96         0.99         3.78        17.59        26.07 
TCGA-16-0850 TCGA-16-1460 TCGA-19-0957 TCGA-19-1392 TCGA-19-1787 TCGA-19-2621 
       16.37         6.41        21.90         3.65        12.66         1.08 
TCGA-19-2623 TCGA-19-2624 TCGA-19-5960 TCGA-19-A60I TCGA-26-1438 TCGA-26-5132 
        7.53         0.16        14.96        17.79        10.03         9.40 
TCGA-26-5133 TCGA-26-5135 TCGA-26-5136 TCGA-26-6173 TCGA-27-1835 TCGA-27-1838 
       14.86         8.88        18.97         7.92        21.30        11.51 
TCGA-27-2518 TCGA-27-2519 TCGA-27-2527 TCGA-28-1746 TCGA-28-1752 TCGA-28-2509 
       24.76        10.39        14.40         0.20         8.48         4.77 
TCGA-28-5207 TCGA-28-5214 TCGA-28-5218 TCGA-28-5219 TCGA-32-1980 TCGA-32-1987 
       11.28        23.44         5.16        22.68         1.18        14.86 
TCGA-32-2491 TCGA-32-2616 TCGA-32-2632 TCGA-32-2634 TCGA-41-2571 TCGA-41-3915 
       12.23         7.36         8.84        22.78         0.85        11.84 
TCGA-41-5651 TCGA-76-6193 TCGA-76-6286 TCGA-76-6662 TCGA-76-6663 TCGA-81-5911 
       15.12         2.70        20.98         9.27         7.73        17.72 
TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5394 
        4.70         7.69        43.89        10.62        64.64         0.10 
TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-DB-5270 
       17.95        12.43         7.56         8.02         7.40       122.73 
TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5276 TCGA-DB-5278 TCGA-DB-5280 TCGA-DB-A4X9 
       81.96        75.25        72.92        50.17        36.56        46.42 
TCGA-DB-A4XA TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XG TCGA-DB-A64O TCGA-DB-A64P 
       18.84        39.78        37.45        72.95        25.48        30.12 
TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64W TCGA-DB-A64X 
        5.98        31.40        27.45        27.81        14.40        18.51 
TCGA-DB-A75K TCGA-DB-A75M TCGA-DB-A75O TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 
       12.10        17.88        30.74        31.82        30.31        14.40 
TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G 
        8.02        30.21        42.05        27.81        17.19        17.19 
TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5849 TCGA-DU-5853 
       13.12        13.38         3.45        18.61        14.56        13.38 
TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 
      182.33        18.94        17.49        15.16       211.17        52.11 
TCGA-DU-6394 TCGA-DU-6396 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6404 TCGA-DU-6408 
       22.42        75.16         1.22        87.45       133.74       114.08 
TCGA-DU-6410 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7013 
        7.96       156.23       138.28        14.99       105.21         8.84 
TCGA-DU-7294 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7309 TCGA-DU-8163 TCGA-DU-8164 
       94.32        44.02        62.01         2.76        20.68        21.40 
TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS 
       19.13        16.96        15.48        14.24        12.59        15.12 
TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 
        4.96         3.65         5.65         8.65         2.70        77.98 
TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T8 TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TG 
        7.13        21.30       124.50        42.31        23.51        44.42 
TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5305 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 
       50.14        67.46        79.99       134.27        78.21        95.57 
TCGA-E1-5322 TCGA-E1-A7YO TCGA-E1-A7YW TCGA-E1-A7Z6 TCGA-F6-A8O3 TCGA-FG-5962 
      130.78        75.02        36.82        32.35         0.23        47.77 
TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6691 TCGA-FG-7634 TCGA-FG-7638 TCGA-FG-7641 
       18.77        14.93        23.97        15.35        22.55        20.61 
TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 
       20.09        12.95        13.68        16.01        20.09        14.96 
TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L 
       22.52        32.61        38.27        14.76        17.82        16.41 
TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A710 TCGA-FG-A713 TCGA-FN-7833 TCGA-HT-7467 
       15.02        16.44        36.66        20.45        27.52         0.10 
TCGA-HT-7468 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7478 TCGA-HT-7479 
        6.67         0.03        16.54         3.75         6.38        40.34 
TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 
       75.19        95.93       106.95       172.77         4.01         5.03 
TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7607 TCGA-HT-7608 
       29.85        23.18       122.47         4.57         3.16        22.06 
TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 
       45.99        56.09        57.60         0.23        14.27         0.16 
TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7690 
       16.24         0.76        44.68         6.05        42.74         0.10 
TCGA-HT-7691 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7856 
        0.10        17.52         6.90        14.53        39.48        39.09 
TCGA-HT-7858 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 
       50.63        23.61        37.15         0.33         0.13         3.68 
TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-8010 TCGA-HT-8012 
        5.33        35.47         3.72        11.28         1.64         9.40 
TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8105 TCGA-HT-8106 
       63.55         0.10        37.87        33.01         6.25         0.10 
TCGA-HT-8107 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 
        0.46         5.56        13.78         0.23        29.59        34.19 
TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 
       28.27        15.72        26.04         0.13        20.22         0.07 
TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61B 
       16.93         1.81        16.14        16.83        21.40        17.52 
TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 
       17.65         2.43        15.35        11.05         0.10        29.92 
TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7491 TCGA-HW-7493 TCGA-HW-7495 TCGA-HW-8321 
       19.89         8.32        40.18        35.90         4.31        19.59 
TCGA-HW-A5KJ TCGA-HW-A5KL TCGA-IK-8125 TCGA-KT-A74X TCGA-P5-A5EW TCGA-P5-A5EX 
       20.35        20.81        42.77        14.40         6.71         1.64 
TCGA-P5-A5EY TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A730 
        2.37         4.11         5.88        10.42        13.25         0.20 
TCGA-P5-A731 TCGA-P5-A733 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X 
        9.01        13.61        15.16         2.53        12.62        15.85 
TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CW TCGA-QH-A6CY TCGA-QH-A6X3 
       14.04        19.33        14.83        13.61         2.20        10.29 
TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6XA TCGA-QH-A86X TCGA-QH-A870 
       14.53        16.34        16.73        16.50        11.08        12.99 
TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y 
       88.83        94.03        32.65        59.38        30.87         5.46 
TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TU TCGA-S9-A6TV 
       28.08         2.07        19.59        30.67        87.12        18.77 
TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 
       34.49        31.33        28.70        17.62        23.64        32.61 
TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE 
       16.08        98.24        95.93       106.39        69.50        72.59 
TCGA-S9-A6WG TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP 
       80.12        84.99        31.10        15.91        18.61        15.16 
TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IY TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 
       14.07        36.13        23.51         8.19         2.04        17.03 
TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R2 TCGA-S9-A7R4 
       15.06        13.12        28.37        13.02        10.39        30.05 
TCGA-S9-A7R7 TCGA-S9-A89V TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA 
       98.63        18.71        49.45        48.33        49.32        34.78 
TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84I TCGA-TM-A84L 
       24.92        16.18        59.05        40.64        28.08        40.83 
TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T 
       24.79        33.24        25.38        18.61        14.93        23.80 
TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CE TCGA-VM-A8CH TCGA-VV-A829 TCGA-VW-A7QS 
       30.08        13.51        35.93        23.47        37.05        23.21 
TCGA-VW-A8FI TCGA-WY-A85A TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
        8.05        43.40        46.88        37.71        20.81 

  DEL PEAK 20(9P21.3) MUTATED DEL PEAK 20(9P21.3) WILD-TYPE 
                         0.10                          0.03 
  DEL PEAK 20(9P21.3) MUTATED DEL PEAK 20(9P21.3) WILD-TYPE 
                       169.84                        211.17 
  DEL PEAK 20(9P21.3) MUTATED DEL PEAK 20(9P21.3) WILD-TYPE 
                       12.575                        16.930 
[1] "0.1 - 169.8 (12.6)" "0.0 - 211.2 (16.9)"
[1] "hr=" "2.8"
D52V2, continuous
D52V3, binary
                               cls
clus                              0   1
  DEL PEAK 20(9P21.3) MUTATED   414 160
  DEL PEAK 20(9P21.3) WILD-TYPE 156 312
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 20(9P21.3) MUTATED    414  160
  DEL PEAK 20(9P21.3) WILD-TYPE  156  312
                        clus
vv                       DEL PEAK 20(9P21.3) MUTATED
  BRAIN                                          414
  CENTRAL NERVOUS SYSTEM                         160
                        clus
vv                       DEL PEAK 20(9P21.3) WILD-TYPE
  BRAIN                                            156
  CENTRAL NERVOUS SYSTEM                           312
[1] 2 2
[1] FALSE
D52V4, binary
                               cls
clus                              0   1
  DEL PEAK 20(9P21.3) MUTATED   244 330
  DEL PEAK 20(9P21.3) WILD-TYPE 186 282
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 20(9P21.3) MUTATED    244  330
  DEL PEAK 20(9P21.3) WILD-TYPE  186  282
        clus
vv       DEL PEAK 20(9P21.3) MUTATED DEL PEAK 20(9P21.3) WILD-TYPE
  FEMALE                         244                           186
  MALE                           330                           282
[1] 2 2
[1] FALSE
D52V5, continuous
                               vv
clus                            ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  DEL PEAK 20(9P21.3) MUTATED            76                            20
  DEL PEAK 20(9P21.3) WILD-TYPE         100                             7
                               vv
clus                            OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  DEL PEAK 20(9P21.3) MUTATED                 35                49
  DEL PEAK 20(9P21.3) WILD-TYPE               83               129
                               vv
clus                            TREATED PRIMARY GBM
  DEL PEAK 20(9P21.3) MUTATED                    15
  DEL PEAK 20(9P21.3) WILD-TYPE                   3
                               vv
clus                            UNTREATED PRIMARY (DE NOVO) GBM
  DEL PEAK 20(9P21.3) MUTATED                               379
  DEL PEAK 20(9P21.3) WILD-TYPE                             146
D52V6, multiclass
                                 clus
vv                                DEL PEAK 20(9P21.3) MUTATED
  ASTROCYTOMA                                              76
  GLIOBLASTOMA MULTIFORME (GBM)                            20
  OLIGOASTROCYTOMA                                         35
  OLIGODENDROGLIOMA                                        49
  TREATED PRIMARY GBM                                      15
  UNTREATED PRIMARY (DE NOVO) GBM                         379
                                 clus
vv                                DEL PEAK 20(9P21.3) WILD-TYPE
  ASTROCYTOMA                                               100
  GLIOBLASTOMA MULTIFORME (GBM)                               7
  OLIGOASTROCYTOMA                                           83
  OLIGODENDROGLIOMA                                         129
  TREATED PRIMARY GBM                                         3
  UNTREATED PRIMARY (DE NOVO) GBM                           146
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D52V7, binary
                               cls
clus                              0   1
  DEL PEAK 20(9P21.3) MUTATED   314 260
  DEL PEAK 20(9P21.3) WILD-TYPE 160 308
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 20(9P21.3) MUTATED    314  260
  DEL PEAK 20(9P21.3) WILD-TYPE  160  308
     clus
vv    DEL PEAK 20(9P21.3) MUTATED DEL PEAK 20(9P21.3) WILD-TYPE
  NO                          314                           160
  YES                         260                           308
[1] 2 2
[1] FALSE
                               vv
clus                            AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 20(9P21.3) MUTATED                                  0    12
  DEL PEAK 20(9P21.3) WILD-TYPE                                1     9
                               vv
clus                            BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 20(9P21.3) MUTATED                          44   498
  DEL PEAK 20(9P21.3) WILD-TYPE                        20   424
D52V8, multiclass
                                  clus
vv                                 DEL PEAK 20(9P21.3) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                           0
  ASIAN                                                     12
  BLACK OR AFRICAN AMERICAN                                 44
  WHITE                                                    498
                                  clus
vv                                 DEL PEAK 20(9P21.3) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                             1
  ASIAN                                                        9
  BLACK OR AFRICAN AMERICAN                                   20
  WHITE                                                      424
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D52V9, binary
                               cls
clus                              0   1
  DEL PEAK 20(9P21.3) MUTATED    15 479
  DEL PEAK 20(9P21.3) WILD-TYPE  15 412
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 20(9P21.3) MUTATED     15  479
  DEL PEAK 20(9P21.3) WILD-TYPE   15  412
                        clus
vv                       DEL PEAK 20(9P21.3) MUTATED
  HISPANIC OR LATINO                              15
  NOT HISPANIC OR LATINO                         479
                        clus
vv                       DEL PEAK 20(9P21.3) WILD-TYPE
  HISPANIC OR LATINO                                15
  NOT HISPANIC OR LATINO                           412
[1] 2 2
[1] FALSE

Clustering(53) Variable = DEL PEAK 21(10P15.3) MUTATION ANALYSIS
D53V1, survival
                                sevent
clus2                              0   1
  DEL PEAK 21(10P15.3) MUTATED   114 423
  DEL PEAK 21(10P15.3) WILD-TYPE 366 136
  DEL PEAK 21(10P15.3) MUTATED DEL PEAK 21(10P15.3) WILD-TYPE 
                           537                            502 
  DEL PEAK 21(10P15.3) MUTATED DEL PEAK 21(10P15.3) WILD-TYPE 
                           423                            136 
$`DEL PEAK 21(10P15.3) MUTATED`
TCGA-02-0003 TCGA-02-0006 TCGA-02-0009 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 
        4.73        18.35        10.59        87.06        77.65        20.12 
TCGA-02-0024 TCGA-02-0027 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 
       53.10        12.16         2.83        14.14         3.62        10.72 
TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 
       10.52        18.31         6.87         3.22        15.09        12.59 
TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 TCGA-02-0059 TCGA-02-0064 TCGA-02-0068 
        6.54         2.50        19.86         9.57        19.73        26.43 
TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0084 
       25.05         5.49        10.19        20.84        27.25        12.62 
TCGA-02-0085 TCGA-02-0086 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0106 
       51.32         8.81        16.96         3.48        27.02        11.67 
TCGA-02-0107 TCGA-02-0113 TCGA-02-0115 TCGA-02-0116 TCGA-02-0260 TCGA-02-0269 
       17.65        92.65        15.65        48.95        16.93        10.75 
TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 
        3.98        13.87        14.20        15.95        12.23         9.90 
TCGA-02-0324 TCGA-02-0325 TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 
        7.73        10.62        15.91        25.71         4.37        25.12 
TCGA-02-0422 TCGA-02-0430 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 
       14.50        10.55        11.34         9.27        16.21         3.35 
TCGA-02-2466 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 
       16.80        15.32        15.45        20.32         2.70         6.15 
TCGA-06-0124 TCGA-06-0126 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 
       20.38         6.94        12.95        25.35        14.30        26.70 
TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0143 TCGA-06-0145 
       24.23        11.90         0.20        10.29        11.74         2.33 
TCGA-06-0147 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 TCGA-06-0155 
       17.79         8.61        19.46        46.59        12.33        10.45 
TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0162 TCGA-06-0164 TCGA-06-0166 
        3.19        10.82         9.44         3.42        56.91         5.85 
TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 
       19.66         3.29        13.12         4.47         3.22         4.04 
TCGA-06-0177 TCGA-06-0179 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 
        4.18        20.25        69.90        73.84        27.22        44.58 
TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 
       15.42        10.42        38.96         4.67         7.40         5.56 
TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 
        0.39         7.66         8.42         7.63         7.40        11.84 
TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 
       15.02        24.16         0.72        19.82        13.64        13.32 
TCGA-06-0241 TCGA-06-0394 TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 TCGA-06-0414 
       48.69        10.82         0.26        72.36         4.70        35.11 
TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 
       12.62         5.75         5.75         9.80         2.10        23.57 
TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 
       14.20        26.40        46.88         7.86         2.70         2.70 
TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 
        0.92        43.46        46.19         5.65         7.17        40.41 
TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1087 TCGA-06-1800 
       16.57        20.78        26.76        23.93         4.04        26.79 
TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-2557 TCGA-06-2558 TCGA-06-2561 
       11.84        15.32        13.61         1.08        12.49        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 
       12.56        30.64         5.95        16.64         5.98         4.37 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 
       11.74         3.55         8.35         4.54         8.81         8.98 
TCGA-06-5415 TCGA-06-5418 TCGA-06-5856 TCGA-06-5859 TCGA-06-6388 TCGA-06-6390 
        8.55         2.73         3.75         4.57         5.23         5.39 
TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 
      120.56         7.36         8.32        12.85         4.77         1.55 
TCGA-06-6700 TCGA-06-A5U0 TCGA-06-A5U1 TCGA-06-A6S1 TCGA-06-A7TK TCGA-08-0244 
        4.77         4.70         1.87         2.56         5.39        22.68 
TCGA-08-0245 TCGA-08-0246 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 
       37.84         4.18         1.74         8.42        25.71        12.16 
TCGA-08-0349 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 
        9.80         1.28         8.42        17.95        24.56        31.10 
TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 
       37.58        22.29         3.39        12.23        14.93        18.02 
TCGA-08-0389 TCGA-08-0390 TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 
       15.35        13.97        12.56         4.27        42.15        11.08 
TCGA-08-0520 TCGA-08-0521 TCGA-08-0529 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 
       10.75         4.80        18.41        15.35        14.73        12.99 
TCGA-12-0619 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 
       34.92        10.45         7.59        94.78         0.10        38.17 
TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 
       25.97        26.66        12.13         3.65        20.38        28.41 
TCGA-12-0769 TCGA-12-0772 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 
       15.06        53.85         7.63         9.73        14.93        14.86 
TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 
       91.76        24.79        18.48        10.62        23.51        27.78 
TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1091 TCGA-12-1093 TCGA-12-1094 
       38.76         8.94        20.58        33.21        15.98        12.23 
TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-12-1598 TCGA-12-1599 
       15.85         9.11        14.53         3.98        15.65        25.68 
TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 
       14.73         6.77        59.77        44.02        26.93        15.22 
TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 
       10.95        12.69        34.92        14.53        14.93         3.22 
TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 
        2.04        15.12        11.97         0.95         6.21        23.05 
TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 
        2.24        11.24        13.78         3.25         1.35         5.39 
TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 TCGA-14-0867 TCGA-14-0871 TCGA-14-1034 
        2.89        16.50        26.33         2.04        28.93        15.95 
TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 
       19.30         0.79         1.38         3.75        32.05        58.78 
TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 TCGA-14-1459 
       23.11         7.10         1.15        30.18         0.92        12.43 
TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 
        0.99         1.97        17.79        17.85         7.63         5.88 
TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-15-0742 TCGA-15-1446 TCGA-15-1449 
        7.17        17.49         7.96        13.78        19.10        13.28 
TCGA-16-0846 TCGA-16-0848 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 
        3.91        17.59        29.03         4.57        10.29        14.01 
TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-19-0955 TCGA-19-0957 TCGA-19-0962 
        9.14        21.24        13.97        11.77        21.90         0.66 
TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 
       14.27         3.39        10.75         9.07         5.95        12.95 
TCGA-19-1389 TCGA-19-1392 TCGA-19-1786 TCGA-19-1789 TCGA-19-2620 TCGA-19-2621 
        4.64         3.65         7.17         3.25         4.87         1.08 
TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 
        7.53         0.16         4.08        24.23         7.00         7.04 
TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 
        6.64        17.19         8.02        18.90         4.73        12.10 
TCGA-19-5955 TCGA-19-5956 TCGA-19-5959 TCGA-19-5960 TCGA-19-A60I TCGA-19-A6J4 
        1.78        22.49        16.80        14.96        17.79         3.98 
TCGA-19-A6J5 TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 TCGA-26-1799 TCGA-26-5132 
       28.54        10.03        13.87         9.73         9.37         9.40 
TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6174 
       14.86         5.49         8.88        18.97         1.58         2.33 
TCGA-26-A7UX TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 
       19.33         5.06        16.60         9.86        24.23        40.54 
TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-2518 TCGA-27-2519 TCGA-27-2523 
       21.30        30.05        14.04        24.76        10.39        16.08 
TCGA-27-2524 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 
        7.59        14.40        15.78         0.20         2.53         9.21 
TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1757 TCGA-28-2502 
        8.35         7.63         8.48         1.22         0.13         0.66 
TCGA-28-2506 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 
        6.74         4.77         7.30         5.26        14.93        11.28 
TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 
       17.88        14.53        11.77        31.27        23.44        11.01 
TCGA-28-5216 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1976 
       13.64        22.68        12.76         5.42        15.39         0.49 
TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 
        0.10        15.85        19.50         1.18         4.67        12.69 
TCGA-32-1987 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2634 
       14.86        12.23        20.78        15.02        15.95        22.78 
TCGA-32-2638 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 
       25.18         3.72        12.59        19.86        10.85        19.23 
TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 
        0.85        13.35         8.94         9.53         0.99         4.44 
TCGA-41-3915 TCGA-41-4097 TCGA-41-6646 TCGA-4W-AA9S TCGA-4W-AA9T TCGA-74-6573 
       11.84         0.20        12.46         4.14        14.76         3.45 
TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 
       20.91         4.34        14.33         8.22         7.50         4.80 
TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 
        4.54         3.09         3.65         9.17         2.53        10.78 
TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 
       16.70         3.29         2.70        11.38        17.06         8.35 
TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 
       20.98         4.83         5.03         0.23         9.27         7.73 
TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 TCGA-OX-A56R TCGA-RR-A6KA TCGA-RR-A6KC 
        1.61        17.72        26.30         5.92         6.28        20.55 
TCGA-CS-4941 TCGA-CS-5395 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-DB-5279 
        7.69        21.01         6.38        17.69        23.84        44.52 
TCGA-DB-A64L TCGA-DB-A64O TCGA-DH-5140 TCGA-DH-A669 TCGA-DU-5847 TCGA-DU-5852 
       24.20        25.48        19.96        30.21        18.02         6.74 
TCGA-DU-5854 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-7006 
        8.45         7.04        11.64        19.89        16.83        11.47 
TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7298 TCGA-DU-8158 
        6.54         8.84        10.36         7.96        18.94         5.10 
TCGA-DU-8161 TCGA-DU-8165 TCGA-DU-A5TY TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76R 
       23.74        19.13        12.20        11.41        26.76        21.30 
TCGA-DU-A7TD TCGA-DU-A7TJ TCGA-E1-5311 TCGA-FG-6688 TCGA-FG-6692 TCGA-FG-7643 
        7.50         0.56       134.27        18.77        18.44        20.09 
TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A70Z TCGA-FG-A87Q TCGA-HT-7471 TCGA-HT-7477 
       10.72        18.38        10.78         5.72         0.13        24.26 
TCGA-HT-7857 TCGA-HT-7860 TCGA-HT-7882 TCGA-HT-8011 TCGA-HT-8104 TCGA-HT-8110 
        0.23         0.49         3.72        16.24        12.23        13.78 
TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A5RA TCGA-HT-A5RC TCGA-HT-A617 TCGA-HT-A61C 
       15.72         0.23        27.35         5.33        16.14        17.65 
TCGA-HT-A74H TCGA-HW-A5KK TCGA-KT-A7W1 TCGA-P5-A5F4 TCGA-P5-A72U TCGA-QH-A6CS 
        2.43        12.76        14.40         0.76         0.16        19.33 
TCGA-QH-A6CV TCGA-QH-A6XC TCGA-RY-A83Z TCGA-S9-A6TS TCGA-S9-A6UA TCGA-S9-A6WM 
       14.53         5.03         9.90        62.17         5.85        19.86 
TCGA-S9-A7IX TCGA-S9-A7R2 TCGA-S9-A89V TCGA-TM-A7C3 TCGA-TM-A84B TCGA-TM-A84I 
       22.32        10.39        18.71        49.45        24.92        28.08 
TCGA-TM-A84J TCGA-VM-A8CD TCGA-VW-A8FI 
       24.16         7.89         8.05 

$`DEL PEAK 21(10P15.3) WILD-TYPE`
TCGA-02-0001 TCGA-02-0007 TCGA-02-0010 TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 
       11.77        23.18        35.41        20.71        82.59        20.61 
TCGA-02-0025 TCGA-02-0026 TCGA-02-0028 TCGA-02-0047 TCGA-02-0058 TCGA-02-0060 
       42.74        24.59        90.58        14.73         8.35         6.02 
TCGA-02-0069 TCGA-02-0080 TCGA-02-0083 TCGA-02-0087 TCGA-02-0104 TCGA-02-0111 
       28.70        89.72        22.72        57.76        65.00        23.18 
TCGA-02-0114 TCGA-02-0258 TCGA-02-0266 TCGA-02-0271 TCGA-02-0326 TCGA-02-0338 
       99.98        16.54        17.72        14.47         7.33        10.59 
TCGA-02-0339 TCGA-02-0432 TCGA-02-2470 TCGA-06-0125 TCGA-06-0127 TCGA-06-0128 
       12.39        47.11        12.92        47.61         3.98        22.72 
TCGA-06-0129 TCGA-06-0142 TCGA-06-0146 TCGA-06-0148 TCGA-06-0154 TCGA-06-0160 
       33.67         2.20        20.09        10.09        13.94        11.80 
TCGA-06-0165 TCGA-06-0176 TCGA-06-0178 TCGA-06-0182 TCGA-06-0213 TCGA-06-0240 
       10.65        91.00        88.14         3.65         0.53        20.42 
TCGA-06-0397 TCGA-06-0412 TCGA-06-0413 TCGA-06-1086 TCGA-06-1805 TCGA-06-1806 
        9.01         9.57         3.16         6.84        33.90        15.32 
TCGA-06-2559 TCGA-06-2569 TCGA-06-2570 TCGA-06-5416 TCGA-06-5858 TCGA-06-6389 
        4.93         0.43        31.50         6.71         6.15         7.79 
TCGA-06-6391 TCGA-06-6701 TCGA-06-A6S0 TCGA-06-A7TL TCGA-08-0344 TCGA-08-0350 
        1.48         4.96         3.12         5.42       115.86        29.23 
TCGA-08-0351 TCGA-08-0392 TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 TCGA-08-0524 
       65.33         0.72        19.59        58.68        19.33         7.27 
TCGA-08-0525 TCGA-08-0531 TCGA-12-0773 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 
       15.98         7.56        43.23       127.59         5.82         7.59 
TCGA-12-1092 TCGA-12-1099 TCGA-14-1396 TCGA-14-1456 TCGA-14-1458 TCGA-14-3477 
       21.73         4.14         1.12        40.96         6.67         3.78 
TCGA-14-4157 TCGA-15-1444 TCGA-15-1447 TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 
        3.42        50.53        53.19        26.07        16.37         4.31 
TCGA-16-1460 TCGA-19-0960 TCGA-19-1390 TCGA-19-1787 TCGA-19-1791 TCGA-19-2619 
        6.41         8.61        25.38        12.66         0.13         9.67 
TCGA-19-5958 TCGA-26-1442 TCGA-26-1443 TCGA-26-6173 TCGA-27-1838 TCGA-27-2521 
       14.07        31.33         7.13         7.92        11.51        10.39 
TCGA-27-2526 TCGA-28-1755 TCGA-28-1756 TCGA-28-5218 TCGA-32-1973 TCGA-32-1991 
        2.86         1.55         2.83         5.16        21.07        16.93 
TCGA-32-2616 TCGA-32-2632 TCGA-32-4208 TCGA-41-5651 TCGA-76-6664 TCGA-CS-4938 
        7.36         8.84        21.14        15.12         7.79         4.70 
TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 
       43.89        18.15        10.62        64.64        40.18         0.10 
TCGA-CS-5396 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 
        9.96        17.95        12.43         8.48         7.56         8.02 
TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 
        7.40         6.61       122.73        81.96        75.25        47.93 
TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 
       72.92        50.86        50.17        36.56        78.28        46.42 
TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF 
       18.84        30.21        46.72        39.78        37.45        33.57 
TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S 
       72.95        31.63        30.12         5.98        31.40        27.45 
TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L 
       27.81        29.23        14.40        18.51        12.10        11.24 
TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 
       17.88        30.74        16.18        31.82        30.31        14.40 
TCGA-DH-5144 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR 
        8.02        42.05        27.81        17.19        17.19        54.25 
TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5849 TCGA-DU-5851 
       13.12        13.38         3.45        18.61        14.56        17.46 
TCGA-DU-5853 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 
       13.38         6.81       182.33        18.94        17.49        15.16 
TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 
      211.17        52.11        22.42        49.02        75.16        46.06 
TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6404 TCGA-DU-6407 TCGA-DU-6408 
       65.75         1.22        87.45       133.74        94.52       114.08 
TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 
        7.96         7.73        62.96       156.23       138.28        14.99 
TCGA-DU-7011 TCGA-DU-7014 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7294 
      105.21       117.40        90.77        30.67        26.30        94.32 
TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 
       44.02        62.01        25.91        60.30        23.31        41.98 
TCGA-DU-7309 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8166 TCGA-DU-8167 
        2.76        14.60        20.68        21.40        16.96        15.48 
TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU 
       14.17        14.24        12.59        15.12         4.96         3.65 
TCGA-DU-A5TW TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 
        5.65         8.65         2.70        77.98         7.23         5.98 
TCGA-DU-A76O TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC 
        7.13        17.98       124.50        77.88        42.31        23.51 
TCGA-DU-A7TG TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 
       44.42        50.14        67.46        41.13        79.99        57.93 
TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YO TCGA-E1-A7YV TCGA-E1-A7YW 
       78.21        95.57       130.78        75.02        32.45        36.82 
TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 
       32.35        14.33         0.23         0.20        47.77        25.48 
TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-7634 
       34.36        36.82        14.93        24.99        23.97        15.35 
TCGA-FG-7636 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 
       17.88        22.55        20.61        12.95        13.68        14.24 
TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT 
       16.01        20.09        14.96        22.52        32.61        38.27 
TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ 
       18.71        23.70        14.76        17.82        16.41        15.02 
TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 
       16.44        22.26        28.54        36.66        48.69        20.45 
TCGA-FG-A87N TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 
       13.58        27.52         0.10         6.67        11.54        40.11 
TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7478 
        0.03        16.54         3.75        17.42         6.54         6.38 
TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 
       40.34        75.19        95.93       106.95       172.77         4.01 
TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 
        5.03        29.85        23.18       122.47         4.57        17.29 
TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 
        3.16        22.06        45.99        56.09        57.60         0.23 
TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 
       14.27         0.16        16.24         0.76        44.68         6.05 
TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 
       42.74         0.10        31.69        14.96         0.10         0.10 
TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 
        2.96        17.52         6.90        14.53        39.48        19.23 
TCGA-HT-7856 TCGA-HT-7858 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 
       39.09        50.63        23.61        37.15         0.33         0.13 
TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 
        3.68         5.33        35.47        11.28        31.43         1.64 
TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8105 
        9.40        63.55         0.10        37.87        33.01         6.25 
TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8111 TCGA-HT-8113 
        0.10         0.46         2.50         5.56         0.23        29.59 
TCGA-HT-8114 TCGA-HT-8563 TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 
       34.19        28.27        26.04         0.13        20.22         0.07 
TCGA-HT-A5RB TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A618 TCGA-HT-A619 
        0.10         2.70        16.93         1.81        16.83        21.40 
TCGA-HT-A61B TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 
       17.52        10.52        15.35        11.05         0.10        29.92 
TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7493 TCGA-HW-7495 
       19.89         8.32        19.23        40.18        35.90         4.31 
TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KL 
       21.70        21.60        19.59        17.82        20.35        20.81 
TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-P5-A5EV TCGA-P5-A5EW 
       20.71        19.00        42.77        14.40         0.23         6.71 
TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 
        1.64         2.37         2.30         4.11         5.88         7.63 
TCGA-P5-A5F6 TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 
        1.28        10.42        13.25        11.64         0.20         9.01 
TCGA-P5-A733 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z 
       13.61        15.16         2.53        12.62        15.85        14.04 
TCGA-QH-A6CU TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 
       14.83        13.61        12.23         2.20         9.17        10.29 
TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A86X 
       14.53        16.34        16.73         1.91        16.50        11.08 
TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X 
       12.99        88.83        94.03        32.65        59.38        30.87 
TCGA-RY-A83Y TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TU 
        5.46        28.08         2.07        19.59        30.67        87.12 
TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 
       18.77        37.84        34.49        31.33        28.70        22.95 
TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 
       17.62        23.64        32.61        16.08        98.24        95.93 
TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI 
      106.39        69.50        72.59        80.12        32.45        84.99 
TCGA-S9-A6WL TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ 
       31.10        15.91        18.61        15.16        14.07        36.13 
TCGA-S9-A7IS TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 
        7.92        23.51         7.13        20.02         8.19         2.04 
TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 
       17.03        15.06        13.12        28.37        13.02       169.84 
TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89Z TCGA-TM-A7C4 
       99.06        30.05        98.63        31.59        11.97        48.33 
TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G 
       49.32        34.78        48.39        16.18        59.05        40.64 
TCGA-TM-A84H TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R 
       30.44        40.83        24.79        33.24        25.38        18.61 
TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RH TCGA-TQ-A7RW TCGA-VM-A8C8 TCGA-VM-A8C9 
       14.93        23.80        15.98        26.99        43.04        30.08 
TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CE TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M 
       13.51         0.10        35.93        23.47        37.05        16.01 
TCGA-VW-A7QS TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A 
       23.21        51.06        13.32        43.96        39.88        43.40 
TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       45.80        46.88        37.71        20.81 

  DEL PEAK 21(10P15.3) MUTATED DEL PEAK 21(10P15.3) WILD-TYPE 
                          0.10                           0.03 
  DEL PEAK 21(10P15.3) MUTATED DEL PEAK 21(10P15.3) WILD-TYPE 
                        134.27                         211.17 
  DEL PEAK 21(10P15.3) MUTATED DEL PEAK 21(10P15.3) WILD-TYPE 
                         11.97                          18.61 
[1] "0.1 - 134.3 (12.0)" "0.0 - 211.2 (18.6)"
[1] "hr=" "5.7"
D53V2, continuous
D53V3, binary
                                cls
clus                               0   1
  DEL PEAK 21(10P15.3) MUTATED   463  75
  DEL PEAK 21(10P15.3) WILD-TYPE 107 397
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 21(10P15.3) MUTATED    463   75
  DEL PEAK 21(10P15.3) WILD-TYPE  107  397
                        clus
vv                       DEL PEAK 21(10P15.3) MUTATED
  BRAIN                                           463
  CENTRAL NERVOUS SYSTEM                           75
                        clus
vv                       DEL PEAK 21(10P15.3) WILD-TYPE
  BRAIN                                             107
  CENTRAL NERVOUS SYSTEM                            397
[1] 2 2
[1] FALSE
D53V4, binary
                                cls
clus                               0   1
  DEL PEAK 21(10P15.3) MUTATED   210 328
  DEL PEAK 21(10P15.3) WILD-TYPE 220 284
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 21(10P15.3) MUTATED    210  328
  DEL PEAK 21(10P15.3) WILD-TYPE  220  284
        clus
vv       DEL PEAK 21(10P15.3) MUTATED DEL PEAK 21(10P15.3) WILD-TYPE
  FEMALE                          210                            220
  MALE                            328                            284
[1] 2 2
[1] FALSE
D53V5, continuous
                                vv
clus                             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  DEL PEAK 21(10P15.3) MUTATED            45                            19
  DEL PEAK 21(10P15.3) WILD-TYPE         131                             8
                                vv
clus                             OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  DEL PEAK 21(10P15.3) MUTATED                 13                17
  DEL PEAK 21(10P15.3) WILD-TYPE              105               161
                                vv
clus                             TREATED PRIMARY GBM
  DEL PEAK 21(10P15.3) MUTATED                    11
  DEL PEAK 21(10P15.3) WILD-TYPE                   7
                                vv
clus                             UNTREATED PRIMARY (DE NOVO) GBM
  DEL PEAK 21(10P15.3) MUTATED                               433
  DEL PEAK 21(10P15.3) WILD-TYPE                              92
D53V6, multiclass
                                 clus
vv                                DEL PEAK 21(10P15.3) MUTATED
  ASTROCYTOMA                                               45
  GLIOBLASTOMA MULTIFORME (GBM)                             19
  OLIGOASTROCYTOMA                                          13
  OLIGODENDROGLIOMA                                         17
  TREATED PRIMARY GBM                                       11
  UNTREATED PRIMARY (DE NOVO) GBM                          433
                                 clus
vv                                DEL PEAK 21(10P15.3) WILD-TYPE
  ASTROCYTOMA                                                131
  GLIOBLASTOMA MULTIFORME (GBM)                                8
  OLIGOASTROCYTOMA                                           105
  OLIGODENDROGLIOMA                                          161
  TREATED PRIMARY GBM                                          7
  UNTREATED PRIMARY (DE NOVO) GBM                             92
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D53V7, binary
                                cls
clus                               0   1
  DEL PEAK 21(10P15.3) MUTATED   320 218
  DEL PEAK 21(10P15.3) WILD-TYPE 154 350
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 21(10P15.3) MUTATED    320  218
  DEL PEAK 21(10P15.3) WILD-TYPE  154  350
     clus
vv    DEL PEAK 21(10P15.3) MUTATED DEL PEAK 21(10P15.3) WILD-TYPE
  NO                           320                            154
  YES                          218                            350
[1] 2 2
[1] FALSE
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 21(10P15.3) MUTATED                                  1     9
  DEL PEAK 21(10P15.3) WILD-TYPE                                0    12
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 21(10P15.3) MUTATED                          45   462
  DEL PEAK 21(10P15.3) WILD-TYPE                        19   460
D53V8, multiclass
                                  clus
vv                                 DEL PEAK 21(10P15.3) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            1
  ASIAN                                                       9
  BLACK OR AFRICAN AMERICAN                                  45
  WHITE                                                     462
                                  clus
vv                                 DEL PEAK 21(10P15.3) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              0
  ASIAN                                                        12
  BLACK OR AFRICAN AMERICAN                                    19
  WHITE                                                       460
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D53V9, binary
                                cls
clus                               0   1
  DEL PEAK 21(10P15.3) MUTATED    10 446
  DEL PEAK 21(10P15.3) WILD-TYPE  20 445
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 21(10P15.3) MUTATED     10  446
  DEL PEAK 21(10P15.3) WILD-TYPE   20  445
                        clus
vv                       DEL PEAK 21(10P15.3) MUTATED
  HISPANIC OR LATINO                               10
  NOT HISPANIC OR LATINO                          446
                        clus
vv                       DEL PEAK 21(10P15.3) WILD-TYPE
  HISPANIC OR LATINO                                 20
  NOT HISPANIC OR LATINO                            445
[1] 2 2
[1] FALSE

Clustering(54) Variable = DEL PEAK 22(10P13) MUTATION ANALYSIS
D54V1, survival
                              sevent
clus2                            0   1
  DEL PEAK 22(10P13) MUTATED   113 424
  DEL PEAK 22(10P13) WILD-TYPE 367 135
  DEL PEAK 22(10P13) MUTATED DEL PEAK 22(10P13) WILD-TYPE 
                         537                          502 
  DEL PEAK 22(10P13) MUTATED DEL PEAK 22(10P13) WILD-TYPE 
                         424                          135 
$`DEL PEAK 22(10P13) MUTATED`
TCGA-02-0003 TCGA-02-0006 TCGA-02-0009 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 
        4.73        18.35        10.59        20.61        87.06        77.65 
TCGA-02-0023 TCGA-02-0024 TCGA-02-0025 TCGA-02-0027 TCGA-02-0033 TCGA-02-0034 
       20.12        53.10        42.74        12.16         2.83        14.14 
TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0048 
        3.62        10.72        10.52        18.31         6.87         3.22 
TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 TCGA-02-0059 
       15.09        12.59         6.54         2.50        19.86         9.57 
TCGA-02-0064 TCGA-02-0068 TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 
       19.73        26.43        25.05         5.49        10.19        20.84 
TCGA-02-0079 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0089 TCGA-02-0099 
       27.25        12.62        51.32         8.81        16.96         3.48 
TCGA-02-0102 TCGA-02-0106 TCGA-02-0107 TCGA-02-0113 TCGA-02-0115 TCGA-02-0116 
       27.02        11.67        17.65        92.65        15.65        48.95 
TCGA-02-0260 TCGA-02-0269 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 
       16.93        10.75         3.98        13.87        14.20        15.95 
TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0330 TCGA-02-0332 
       12.23         9.90         7.73        10.62        15.91        25.71 
TCGA-02-0333 TCGA-02-0337 TCGA-02-0422 TCGA-02-0430 TCGA-02-0440 TCGA-02-0446 
        4.37        25.12        14.50        10.55        11.34         9.27 
TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 
       16.21         3.35        16.80        15.32        15.45        20.32 
TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 TCGA-06-0128 TCGA-06-0130 
        2.70         6.15        20.38         6.94        22.72        12.95 
TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 
       25.35        14.30        26.70        24.23        11.90         0.20 
TCGA-06-0141 TCGA-06-0143 TCGA-06-0145 TCGA-06-0147 TCGA-06-0149 TCGA-06-0150 
       10.29        11.74         2.33        17.79         8.61        19.46 
TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 
       46.59        12.33        13.94        10.45         3.19        10.82 
TCGA-06-0159 TCGA-06-0162 TCGA-06-0164 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 
        9.44         3.42        56.91         5.85        19.66         3.29 
TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0177 TCGA-06-0179 
       13.12         4.47         3.22         4.04         4.18        20.25 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 
       69.90        73.84        27.22        44.58        15.42        10.42 
TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 
       38.96         4.67         7.40         5.56         0.39         7.66 
TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0214 TCGA-06-0216 
        8.42         7.63         7.40        11.84        15.02        24.16 
TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 TCGA-06-0241 TCGA-06-0394 
        0.72        19.82        13.64        13.32        48.69        10.82 
TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 TCGA-06-0412 TCGA-06-0414 TCGA-06-0644 
        0.26        72.36         4.70         9.57        35.11        12.62 
TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 
        5.75         5.75         9.80         2.10        23.57        14.20 
TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 
       26.40        46.88         7.86         2.70         2.70         0.92 
TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 
       43.46        46.19         5.65         7.17        40.41        16.57 
TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 
       20.78        26.76        23.93         4.04        26.79        11.84 
TCGA-06-1802 TCGA-06-1804 TCGA-06-2557 TCGA-06-2558 TCGA-06-2561 TCGA-06-2562 
       15.32        13.61         1.08        12.49        17.65        12.56 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-5408 
       30.64         5.95        16.64         5.98         4.37        11.74 
TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 
        3.55         8.35         4.54         8.81         8.98         8.55 
TCGA-06-5418 TCGA-06-5856 TCGA-06-5859 TCGA-06-6388 TCGA-06-6390 TCGA-06-6693 
        2.73         3.75         4.57         5.23         5.39       120.56 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.32        12.85         4.77         1.55         4.77 
TCGA-06-A5U1 TCGA-06-A6S1 TCGA-06-A7TK TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 
        1.87         2.56         5.39        22.68        37.84         4.18 
TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0352 
        1.74         8.42        25.71        12.16         9.80         1.28 
TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 
        8.42        17.95        24.56        31.10        37.58        22.29 
TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 
        3.39        12.23        14.93        18.02        15.35        13.97 
TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 TCGA-08-0520 TCGA-08-0521 
       12.56         4.27        42.15        11.08        10.75         4.80 
TCGA-08-0529 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 
       18.41        15.35        14.73        12.99        34.92        10.45 
TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 
        7.59        94.78         0.10        38.17        25.97        26.66 
TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 
       12.13         3.65        20.38        28.41        15.06        53.85 
TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0819 TCGA-12-0820 
        7.63         9.73        14.93        14.86        24.79        18.48 
TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 
       10.62        23.51        27.78        38.76         8.94        20.58 
TCGA-12-1091 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 
       33.21        15.98        12.23        15.85         9.11        14.53 
TCGA-12-1098 TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 
        3.98        15.65        25.68        14.73         6.77        59.77 
TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 
       44.02        26.93        15.22        10.95        12.69        34.92 
TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 
       14.53        14.93         3.22         2.04        15.12        11.97 
TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 
        0.95         6.21        23.05         2.24        11.24        13.78 
TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 
        3.25         1.35         5.39         2.89        16.50        26.33 
TCGA-14-0867 TCGA-14-0871 TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 
        2.04        28.93        15.95        19.30         0.79         1.38 
TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 
        3.75        32.05        58.78        23.11         7.10         1.15 
TCGA-14-1454 TCGA-14-1455 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 
       30.18         0.92        12.43         0.99         1.97        17.79 
TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 
       17.85         7.63         5.88         7.17        17.49         7.96 
TCGA-15-0742 TCGA-15-1446 TCGA-15-1449 TCGA-16-0848 TCGA-16-1045 TCGA-16-1047 
       13.78        19.10        13.28        17.59        29.03         4.57 
TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-19-0955 
       10.29        14.01         9.14        21.24        13.97        11.77 
TCGA-19-0957 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 
       21.90         0.66        14.27         3.39        10.75         9.07 
TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 TCGA-19-1392 TCGA-19-1786 TCGA-19-1789 
        5.95        12.95         4.64         3.65         7.17         3.25 
TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 
        4.87         1.08         7.53         0.16         4.08        24.23 
TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 
        7.00         7.04         6.64        17.19         8.02        18.90 
TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5959 TCGA-19-5960 
        4.73        12.10         1.78        22.49        16.80        14.96 
TCGA-19-A60I TCGA-19-A6J4 TCGA-19-A6J5 TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 
       17.79         3.98        28.54        10.03        13.87         9.73 
TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 
        9.37         9.40        14.86         5.49         8.88        18.97 
TCGA-26-5139 TCGA-26-6174 TCGA-26-A7UX TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 
        1.58         2.33        19.33         5.06        16.60         9.86 
TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1837 TCGA-27-2518 TCGA-27-2519 
       24.23        40.54        21.30        14.04        24.76        10.39 
TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 
       10.39        16.08         7.59        14.40        15.78         0.20 
TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 
        2.53         9.21         8.35         7.63         8.48         1.22 
TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 
        0.13         0.66         6.74         4.77         7.30         5.26 
TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 
       14.93        11.28        17.88        14.53        11.77        31.27 
TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 
       23.44        11.01        13.64        22.68        12.76         5.42 
TCGA-32-1970 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 
       15.39         0.10        15.85        19.50         1.18         4.67 
TCGA-32-1986 TCGA-32-1987 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 
       12.69        14.86        12.23        20.78        15.02        15.95 
TCGA-32-2634 TCGA-32-2638 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 
       22.78        25.18         3.72        12.59        19.86        10.85 
TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 
       19.23         0.85        13.35         8.94         9.53         0.99 
TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-6646 TCGA-4W-AA9S TCGA-4W-AA9T 
        4.44        11.84         0.20        12.46         4.14        14.76 
TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 
        3.45        20.91         4.34        14.33         8.22         7.50 
TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 
        4.80         4.54         3.09         3.65         9.17         2.53 
TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 
       10.78        16.70         3.29         2.70        11.38        17.06 
TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 
        8.35        20.98         4.83         5.03         0.23         9.27 
TCGA-76-6663 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 TCGA-OX-A56R TCGA-RR-A6KA 
        7.73         1.61        17.72        26.30         5.92         6.28 
TCGA-RR-A6KC TCGA-CS-4941 TCGA-CS-5395 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 
       20.55         7.69        21.01         6.38        17.69        23.84 
TCGA-DB-5279 TCGA-DB-A64L TCGA-DB-A64O TCGA-DH-5140 TCGA-DH-A669 TCGA-DU-5847 
       44.52        24.20        25.48        19.96        30.21        18.02 
TCGA-DU-5852 TCGA-DU-5854 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6405 TCGA-DU-6406 
        6.74         8.45         7.04        11.64        19.89        16.83 
TCGA-DU-7006 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7298 
       11.47         6.54         8.84        10.36         7.96        18.94 
TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8165 TCGA-DU-A5TY TCGA-DU-A76K TCGA-DU-A76L 
        5.10        23.74        19.13        12.20        11.41        26.76 
TCGA-DU-A76R TCGA-DU-A7TD TCGA-DU-A7TJ TCGA-E1-5311 TCGA-FG-6688 TCGA-FG-6692 
       21.30         7.50         0.56       134.27        18.77        18.44 
TCGA-FG-7643 TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A70Z TCGA-FG-A87Q TCGA-HT-7471 
       20.09        10.72        18.38        10.78         5.72         0.13 
TCGA-HT-7857 TCGA-HT-7860 TCGA-HT-7882 TCGA-HT-8011 TCGA-HT-8104 TCGA-HT-8110 
        0.23         0.49         3.72        16.24        12.23        13.78 
TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A5RA TCGA-HT-A5RC TCGA-HT-A617 TCGA-HT-A61C 
       15.72         0.23        27.35         5.33        16.14        17.65 
TCGA-HT-A74H TCGA-HW-A5KK TCGA-KT-A7W1 TCGA-P5-A72U TCGA-QH-A6CS TCGA-QH-A6CV 
        2.43        12.76        14.40         0.16        19.33        14.53 
TCGA-QH-A6XC TCGA-RY-A83Z TCGA-S9-A6TS TCGA-S9-A6U0 TCGA-S9-A6UA TCGA-S9-A6WM 
        5.03         9.90        62.17        22.95         5.85        19.86 
TCGA-S9-A7IX TCGA-S9-A7R2 TCGA-S9-A89V TCGA-TM-A7C3 TCGA-TM-A84B TCGA-TM-A84I 
       22.32        10.39        18.71        49.45        24.92        28.08 
TCGA-TM-A84J TCGA-VM-A8CD TCGA-VW-A8FI 
       24.16         7.89         8.05 

$`DEL PEAK 22(10P13) WILD-TYPE`
TCGA-02-0001 TCGA-02-0007 TCGA-02-0010 TCGA-02-0011 TCGA-02-0014 TCGA-02-0026 
       11.77        23.18        35.41        20.71        82.59        24.59 
TCGA-02-0028 TCGA-02-0047 TCGA-02-0058 TCGA-02-0060 TCGA-02-0069 TCGA-02-0080 
       90.58        14.73         8.35         6.02        28.70        89.72 
TCGA-02-0083 TCGA-02-0087 TCGA-02-0104 TCGA-02-0111 TCGA-02-0114 TCGA-02-0258 
       22.72        57.76        65.00        23.18        99.98        16.54 
TCGA-02-0266 TCGA-02-0271 TCGA-02-0326 TCGA-02-0338 TCGA-02-0339 TCGA-02-0432 
       17.72        14.47         7.33        10.59        12.39        47.11 
TCGA-02-2470 TCGA-06-0125 TCGA-06-0127 TCGA-06-0129 TCGA-06-0142 TCGA-06-0146 
       12.92        47.61         3.98        33.67         2.20        20.09 
TCGA-06-0148 TCGA-06-0160 TCGA-06-0165 TCGA-06-0176 TCGA-06-0178 TCGA-06-0182 
       10.09        11.80        10.65        91.00        88.14         3.65 
TCGA-06-0213 TCGA-06-0240 TCGA-06-0397 TCGA-06-0413 TCGA-06-1086 TCGA-06-1805 
        0.53        20.42         9.01         3.16         6.84        33.90 
TCGA-06-1806 TCGA-06-2559 TCGA-06-2569 TCGA-06-2570 TCGA-06-5416 TCGA-06-5858 
       15.32         4.93         0.43        31.50         6.71         6.15 
TCGA-06-6389 TCGA-06-6391 TCGA-06-6701 TCGA-06-A5U0 TCGA-06-A6S0 TCGA-06-A7TL 
        7.79         1.48         4.96         4.70         3.12         5.42 
TCGA-08-0344 TCGA-08-0350 TCGA-08-0351 TCGA-08-0392 TCGA-08-0516 TCGA-08-0517 
      115.86        29.23        65.33         0.72        19.59        58.68 
TCGA-08-0518 TCGA-08-0524 TCGA-08-0525 TCGA-08-0531 TCGA-12-0773 TCGA-12-0818 
       19.33         7.27        15.98         7.56        43.23        91.76 
TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1092 TCGA-12-1099 TCGA-14-1396 
      127.59         5.82         7.59        21.73         4.14         1.12 
TCGA-14-1456 TCGA-14-1458 TCGA-14-3477 TCGA-14-4157 TCGA-15-1444 TCGA-15-1447 
       40.96         6.67         3.78         3.42        50.53        53.19 
TCGA-16-0846 TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 TCGA-16-1460 TCGA-19-0960 
        3.91        26.07        16.37         4.31         6.41         8.61 
TCGA-19-1390 TCGA-19-1787 TCGA-19-1791 TCGA-19-2619 TCGA-19-5958 TCGA-26-1442 
       25.38        12.66         0.13         9.67        14.07        31.33 
TCGA-26-1443 TCGA-26-6173 TCGA-27-1836 TCGA-27-1838 TCGA-27-2526 TCGA-28-1755 
        7.13         7.92        30.05        11.51         2.86         1.55 
TCGA-28-1756 TCGA-28-5218 TCGA-32-1973 TCGA-32-1976 TCGA-32-1991 TCGA-32-2616 
        2.83         5.16        21.07         0.49        16.93         7.36 
TCGA-32-2632 TCGA-32-4208 TCGA-41-5651 TCGA-76-6664 TCGA-CS-4938 TCGA-CS-4942 
        8.84        21.14        15.12         7.79         4.70        43.89 
TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5396 
       18.15        10.62        64.64        40.18         0.10         9.96 
TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 
       17.95        12.43         8.48         7.56         8.02         7.40 
TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 
        6.61       122.73        81.96        75.25        47.93        72.92 
TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA 
       50.86        50.17        36.56        78.28        46.42        18.84 
TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG 
       30.21        46.72        39.78        37.45        33.57        72.95 
TCGA-DB-A4XH TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U 
       31.63        30.12         5.98        31.40        27.45        27.81 
TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M 
       29.23        14.40        18.51        12.10        11.24        17.88 
TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 
       30.74        16.18        31.82        30.31        14.40         8.02 
TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US 
       42.05        27.81        17.19        17.19        54.25        13.12 
TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5853 
       13.38         3.45        18.61        14.56        17.46        13.38 
TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 
        6.81       182.33        18.94        17.49        15.16       211.17 
TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 
       52.11        22.42        49.02        75.16        46.06        65.75 
TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6404 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 
        1.22        87.45       133.74        94.52       114.08         7.96 
TCGA-DU-6542 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 
        7.73        62.96       156.23       138.28        14.99       105.21 
TCGA-DU-7014 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7294 TCGA-DU-7299 
      117.40        90.77        30.67        26.30        94.32        44.02 
TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 
       62.01        25.91        60.30        23.31        41.98         2.76 
TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 
       14.60        20.68        21.40        16.96        15.48        14.17 
TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW 
       14.24        12.59        15.12         4.96         3.65         5.65 
TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76O 
        8.65         2.70        77.98         7.23         5.98         7.13 
TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TG 
       17.98       124.50        77.88        42.31        23.51        44.42 
TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5318 
       50.14        67.46        41.13        79.99        57.93        78.21 
TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YO TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7Z6 
       95.57       130.78        75.02        32.45        36.82        32.35 
TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 
       14.33         0.23         0.20        47.77        25.48        34.36 
TCGA-FG-5965 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-7634 TCGA-FG-7636 
       36.82        14.93        24.99        23.97        15.35        17.88 
TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 
       22.55        20.61        12.95        13.68        14.24        16.01 
TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MX 
       20.09        14.96        22.52        32.61        38.27        18.71 
TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 
       23.70        14.76        17.82        16.41        15.02        16.44 
TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N 
       22.26        28.54        36.66        48.69        20.45        13.58 
TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7472 
       27.52         0.10         6.67        11.54        40.11         0.03 
TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 
       16.54         3.75        17.42         6.54        24.26         6.38 
TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 
       40.34        75.19        95.93       106.95       172.77         4.01 
TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 
        5.03        29.85        23.18       122.47         4.57        17.29 
TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 
        3.16        22.06        45.99        56.09        57.60         0.23 
TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 
       14.27         0.16        16.24         0.76        44.68         6.05 
TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 
       42.74         0.10        31.69        14.96         0.10         0.10 
TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 
        2.96        17.52         6.90        14.53        39.48        19.23 
TCGA-HT-7856 TCGA-HT-7858 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 
       39.09        50.63        23.61        37.15         0.33         0.13 
TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 
        3.68         5.33        35.47        11.28        31.43         1.64 
TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8105 
        9.40        63.55         0.10        37.87        33.01         6.25 
TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8111 TCGA-HT-8113 
        0.10         0.46         2.50         5.56         0.23        29.59 
TCGA-HT-8114 TCGA-HT-8563 TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 
       34.19        28.27        26.04         0.13        20.22         0.07 
TCGA-HT-A5RB TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A618 TCGA-HT-A619 
        0.10         2.70        16.93         1.81        16.83        21.40 
TCGA-HT-A61B TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 
       17.52        10.52        15.35        11.05         0.10        29.92 
TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7493 TCGA-HW-7495 
       19.89         8.32        19.23        40.18        35.90         4.31 
TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KL 
       21.70        21.60        19.59        17.82        20.35        20.81 
TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-P5-A5EV TCGA-P5-A5EW 
       20.71        19.00        42.77        14.40         0.23         6.71 
TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 
        1.64         2.37         2.30         4.11         5.88         7.63 
TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 
        0.76         1.28        10.42        13.25        11.64         0.20 
TCGA-P5-A731 TCGA-P5-A733 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X 
        9.01        13.61        15.16         2.53        12.62        15.85 
TCGA-QH-A65Z TCGA-QH-A6CU TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ 
       14.04        14.83        13.61        12.23         2.20         9.17 
TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA 
       10.29        14.53        16.34        16.73         1.91        16.50 
TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M 
       11.08        12.99        88.83        94.03        32.65        59.38 
TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 
       30.87         5.46        28.08         2.07        19.59        30.67 
TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ 
       87.12        18.77        37.84        34.49        31.33        28.70 
TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 
       17.62        23.64        32.61        16.08        98.24        95.93 
TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI 
      106.39        69.50        72.59        80.12        32.45        84.99 
TCGA-S9-A6WL TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ 
       31.10        15.91        18.61        15.16        14.07        36.13 
TCGA-S9-A7IS TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 
        7.92        23.51         7.13        20.02         8.19         2.04 
TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 
       17.03        15.06        13.12        28.37        13.02       169.84 
TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89Z TCGA-TM-A7C4 
       99.06        30.05        98.63        31.59        11.97        48.33 
TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G 
       49.32        34.78        48.39        16.18        59.05        40.64 
TCGA-TM-A84H TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R 
       30.44        40.83        24.79        33.24        25.38        18.61 
TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RH TCGA-TQ-A7RW TCGA-VM-A8C8 TCGA-VM-A8C9 
       14.93        23.80        15.98        26.99        43.04        30.08 
TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CE TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M 
       13.51         0.10        35.93        23.47        37.05        16.01 
TCGA-VW-A7QS TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A 
       23.21        51.06        13.32        43.96        39.88        43.40 
TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       45.80        46.88        37.71        20.81 

  DEL PEAK 22(10P13) MUTATED DEL PEAK 22(10P13) WILD-TYPE 
                        0.10                         0.03 
  DEL PEAK 22(10P13) MUTATED DEL PEAK 22(10P13) WILD-TYPE 
                      134.27                       211.17 
  DEL PEAK 22(10P13) MUTATED DEL PEAK 22(10P13) WILD-TYPE 
                       12.13                        18.61 
[1] "0.1 - 134.3 (12.1)" "0.0 - 211.2 (18.6)"
[1] "hr=" "5.9"
D54V2, continuous
D54V3, binary
                              cls
clus                             0   1
  DEL PEAK 22(10P13) MUTATED   464  74
  DEL PEAK 22(10P13) WILD-TYPE 106 398
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 22(10P13) MUTATED    464   74
  DEL PEAK 22(10P13) WILD-TYPE  106  398
                        clus
vv                       DEL PEAK 22(10P13) MUTATED
  BRAIN                                         464
  CENTRAL NERVOUS SYSTEM                         74
                        clus
vv                       DEL PEAK 22(10P13) WILD-TYPE
  BRAIN                                           106
  CENTRAL NERVOUS SYSTEM                          398
[1] 2 2
[1] FALSE
D54V4, binary
                              cls
clus                             0   1
  DEL PEAK 22(10P13) MUTATED   207 331
  DEL PEAK 22(10P13) WILD-TYPE 223 281
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 22(10P13) MUTATED    207  331
  DEL PEAK 22(10P13) WILD-TYPE  223  281
        clus
vv       DEL PEAK 22(10P13) MUTATED DEL PEAK 22(10P13) WILD-TYPE
  FEMALE                        207                          223
  MALE                          331                          281
[1] 2 2
[1] FALSE
D54V5, continuous
                              vv
clus                           ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  DEL PEAK 22(10P13) MUTATED            45                            18
  DEL PEAK 22(10P13) WILD-TYPE         131                             9
                              vv
clus                           OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  DEL PEAK 22(10P13) MUTATED                 13                16
  DEL PEAK 22(10P13) WILD-TYPE              105               162
                              vv
clus                           TREATED PRIMARY GBM
  DEL PEAK 22(10P13) MUTATED                    11
  DEL PEAK 22(10P13) WILD-TYPE                   7
                              vv
clus                           UNTREATED PRIMARY (DE NOVO) GBM
  DEL PEAK 22(10P13) MUTATED                               435
  DEL PEAK 22(10P13) WILD-TYPE                              90
D54V6, multiclass
                                 clus
vv                                DEL PEAK 22(10P13) MUTATED
  ASTROCYTOMA                                             45
  GLIOBLASTOMA MULTIFORME (GBM)                           18
  OLIGOASTROCYTOMA                                        13
  OLIGODENDROGLIOMA                                       16
  TREATED PRIMARY GBM                                     11
  UNTREATED PRIMARY (DE NOVO) GBM                        435
                                 clus
vv                                DEL PEAK 22(10P13) WILD-TYPE
  ASTROCYTOMA                                              131
  GLIOBLASTOMA MULTIFORME (GBM)                              9
  OLIGOASTROCYTOMA                                         105
  OLIGODENDROGLIOMA                                        162
  TREATED PRIMARY GBM                                        7
  UNTREATED PRIMARY (DE NOVO) GBM                           90
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D54V7, binary
                              cls
clus                             0   1
  DEL PEAK 22(10P13) MUTATED   324 214
  DEL PEAK 22(10P13) WILD-TYPE 150 354
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 22(10P13) MUTATED    324  214
  DEL PEAK 22(10P13) WILD-TYPE  150  354
     clus
vv    DEL PEAK 22(10P13) MUTATED DEL PEAK 22(10P13) WILD-TYPE
  NO                         324                          150
  YES                        214                          354
[1] 2 2
[1] FALSE
                              vv
clus                           AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 22(10P13) MUTATED                                  1     9
  DEL PEAK 22(10P13) WILD-TYPE                                0    12
                              vv
clus                           BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 22(10P13) MUTATED                          44   463
  DEL PEAK 22(10P13) WILD-TYPE                        20   459
D54V8, multiclass
                                  clus
vv                                 DEL PEAK 22(10P13) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                          1
  ASIAN                                                     9
  BLACK OR AFRICAN AMERICAN                                44
  WHITE                                                   463
                                  clus
vv                                 DEL PEAK 22(10P13) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                            0
  ASIAN                                                      12
  BLACK OR AFRICAN AMERICAN                                  20
  WHITE                                                     459
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D54V9, binary
                              cls
clus                             0   1
  DEL PEAK 22(10P13) MUTATED    10 446
  DEL PEAK 22(10P13) WILD-TYPE  20 445
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 22(10P13) MUTATED     10  446
  DEL PEAK 22(10P13) WILD-TYPE   20  445
                        clus
vv                       DEL PEAK 22(10P13) MUTATED
  HISPANIC OR LATINO                             10
  NOT HISPANIC OR LATINO                        446
                        clus
vv                       DEL PEAK 22(10P13) WILD-TYPE
  HISPANIC OR LATINO                               20
  NOT HISPANIC OR LATINO                          445
[1] 2 2
[1] FALSE

Clustering(55) Variable = DEL PEAK 23(10P11.23) MUTATION ANALYSIS
D55V1, survival
                                 sevent
clus2                               0   1
  DEL PEAK 23(10P11.23) MUTATED   114 427
  DEL PEAK 23(10P11.23) WILD-TYPE 366 132
  DEL PEAK 23(10P11.23) MUTATED DEL PEAK 23(10P11.23) WILD-TYPE 
                            541                             498 
  DEL PEAK 23(10P11.23) MUTATED DEL PEAK 23(10P11.23) WILD-TYPE 
                            427                             132 
$`DEL PEAK 23(10P11.23) MUTATED`
TCGA-02-0003 TCGA-02-0006 TCGA-02-0009 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 
        4.73        18.35        10.59        87.06        77.65        20.12 
TCGA-02-0027 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 
       12.16         2.83        14.14         3.62        10.72        10.52 
TCGA-02-0043 TCGA-02-0046 TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 
       18.31         6.87         3.22        15.09        12.59         6.54 
TCGA-02-0055 TCGA-02-0057 TCGA-02-0059 TCGA-02-0064 TCGA-02-0068 TCGA-02-0070 
        2.50        19.86         9.57        19.73        26.43        25.05 
TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0084 TCGA-02-0085 
        5.49        10.19        20.84        27.25        12.62        51.32 
TCGA-02-0086 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0106 TCGA-02-0107 
        8.81        16.96         3.48        27.02        11.67        17.65 
TCGA-02-0113 TCGA-02-0115 TCGA-02-0116 TCGA-02-0260 TCGA-02-0269 TCGA-02-0281 
       92.65        15.65        48.95        16.93        10.75         3.98 
TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 
       13.87        14.20        15.95        12.23         9.90         7.73 
TCGA-02-0325 TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0422 
       10.62        15.91        25.71         4.37        25.12        14.50 
TCGA-02-0430 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 
       10.55        11.34         9.27        16.21         3.35        16.80 
TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 
       15.32        15.45        20.32         2.70         6.15        20.38 
TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0130 TCGA-06-0132 
       47.61         6.94         3.98        22.72        12.95        25.35 
TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 
       14.30        26.70        24.23        11.90         0.20        10.29 
TCGA-06-0143 TCGA-06-0145 TCGA-06-0147 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 
       11.74         2.33        17.79         8.61        19.46        46.59 
TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 
       12.33        13.94        10.45         3.19        10.82         9.44 
TCGA-06-0162 TCGA-06-0164 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 
        3.42        56.91         5.85        19.66         3.29        13.12 
TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0177 TCGA-06-0179 TCGA-06-0182 
        4.47         3.22         4.04         4.18        20.25         3.65 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 
       69.90        73.84        27.22        44.58        15.42        10.42 
TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 
       38.96         4.67         7.40         5.56         0.39         7.66 
TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0214 TCGA-06-0216 
        8.42         7.63         7.40        11.84        15.02        24.16 
TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 TCGA-06-0241 TCGA-06-0394 
        0.72        19.82        13.64        13.32        48.69        10.82 
TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 TCGA-06-0412 TCGA-06-0414 TCGA-06-0644 
        0.26        72.36         4.70         9.57        35.11        12.62 
TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 
        5.75         5.75         9.80         2.10        23.57        14.20 
TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 
       26.40        46.88         7.86         2.70         2.70         0.92 
TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 
       43.46        46.19         5.65         7.17        40.41        16.57 
TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 
       20.78        26.76        23.93         4.04        26.79        11.84 
TCGA-06-1802 TCGA-06-1804 TCGA-06-2557 TCGA-06-2558 TCGA-06-2561 TCGA-06-2562 
       15.32        13.61         1.08        12.49        17.65        12.56 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-5408 
       30.64         5.95        16.64         5.98         4.37        11.74 
TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 
        3.55         8.35         4.54         8.81         8.98         8.55 
TCGA-06-5418 TCGA-06-5856 TCGA-06-5859 TCGA-06-6388 TCGA-06-6390 TCGA-06-6693 
        2.73         3.75         4.57         5.23         5.39       120.56 
TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-A5U1 TCGA-06-A6S0 
       12.85         4.77         1.55         4.77         1.87         3.12 
TCGA-06-A6S1 TCGA-06-A7TK TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 TCGA-08-0345 
        2.56         5.39        22.68        37.84         4.18         1.74 
TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0352 TCGA-08-0353 
        8.42        25.71        12.16         9.80         1.28         8.42 
TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 
       17.95        24.56        31.10        37.58        22.29         3.39 
TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 TCGA-08-0509 
       12.23        14.93        18.02        15.35        13.97        12.56 
TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 
        4.27        42.15        11.08        19.33        10.75         4.80 
TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 
       15.98        18.41         7.56        15.35        14.73        12.99 
TCGA-12-0619 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 
       34.92        10.45         7.59        94.78         0.10        38.17 
TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 
       25.97        26.66        12.13         3.65        20.38        28.41 
TCGA-12-0769 TCGA-12-0772 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 
       15.06        53.85         7.63         9.73        14.93        14.86 
TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 
       24.79        18.48        10.62        23.51        27.78        38.76 
TCGA-12-0828 TCGA-12-0829 TCGA-12-1091 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 
        8.94        20.58        33.21        15.98        12.23        15.85 
TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 
        9.11        14.53         3.98        15.65        25.68        14.73 
TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 
        6.77        59.77        44.02        26.93        15.22        10.95 
TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 
       12.69        34.92        14.53        14.93         3.22         2.04 
TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 
       15.12        11.97         0.95         6.21        23.05         2.24 
TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 
       11.24        13.78         3.25         1.35         5.39         2.89 
TCGA-14-0865 TCGA-14-0866 TCGA-14-0867 TCGA-14-0871 TCGA-14-1034 TCGA-14-1037 
       16.50        26.33         2.04        28.93        15.95        19.30 
TCGA-14-1043 TCGA-14-1395 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 
        0.79         1.38         3.75        32.05        58.78        23.11 
TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 TCGA-14-1459 TCGA-14-1794 
        7.10         1.15        30.18         0.92        12.43         0.99 
TCGA-14-1795 TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 
        1.97        17.85         7.63         5.88         7.17        17.49 
TCGA-14-2555 TCGA-15-0742 TCGA-15-1446 TCGA-15-1449 TCGA-16-0848 TCGA-16-1045 
        7.96        13.78        19.10        13.28        17.59        29.03 
TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 
        4.57        10.29        14.01         9.14        21.24        13.97 
TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 
       11.77        21.90         8.61         0.66        14.27         3.39 
TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 TCGA-19-1392 
       10.75         9.07         5.95        12.95         4.64         3.65 
TCGA-19-1786 TCGA-19-1789 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 
        7.17         3.25         9.67         4.87         1.08         7.53 
TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 
        0.16         4.08        24.23         7.00         7.04         6.64 
TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 
       17.19         8.02        18.90         4.73        12.10         1.78 
TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-19-A60I TCGA-19-A6J4 TCGA-19-A6J5 
       14.07        16.80        14.96        17.79         3.98        28.54 
TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 
       10.03        13.87         9.73         9.37         9.40        14.86 
TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6174 TCGA-26-A7UX 
        5.49         8.88        18.97         1.58         2.33        19.33 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 
        5.06        16.60         9.86        24.23        40.54        21.30 
TCGA-27-1836 TCGA-27-1837 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2524 
       30.05        14.04        24.76        10.39        10.39         7.59 
TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 
       14.40        15.78         0.20         2.53         9.21         8.35 
TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 
        7.63         8.48         1.22         0.13         0.66         6.74 
TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 
        4.77         7.30         5.26        14.93        11.28        17.88 
TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 
       14.53        11.77        31.27        23.44        11.01        13.64 
TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1976 TCGA-32-1977 
       22.68        12.76         5.42        15.39         0.49         0.10 
TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 
       15.85        19.50         1.18         4.67        12.69        14.86 
TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2634 TCGA-32-2638 
       12.23        20.78        15.02        15.95        22.78        25.18 
TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 
        3.72        12.59        19.86        10.85        19.23         0.85 
TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 
       13.35         8.94         9.53         0.99         4.44        11.84 
TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-4W-AA9S TCGA-4W-AA9T TCGA-74-6573 
        0.20        15.12        12.46         4.14        14.76         3.45 
TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 
       20.91         4.34        14.33         8.22         7.50         4.80 
TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 
        4.54         3.09         3.65         9.17         2.53        10.78 
TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 
       16.70         3.29         2.70        11.38        17.06         8.35 
TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 
       20.98         4.83         5.03         0.23         9.27         7.73 
TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 TCGA-OX-A56R TCGA-RR-A6KA TCGA-RR-A6KC 
        1.61        17.72        26.30         5.92         6.28        20.55 
TCGA-CS-4941 TCGA-CS-5395 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-DB-5279 
        7.69        21.01         6.38        17.69        23.84        44.52 
TCGA-DB-A64L TCGA-DB-A64O TCGA-DH-5140 TCGA-DH-A669 TCGA-DU-5847 TCGA-DU-5852 
       24.20        25.48        19.96        30.21        18.02         6.74 
TCGA-DU-5854 TCGA-DU-6402 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-7006 TCGA-DU-7012 
        8.45         7.04        19.89        16.83        11.47         6.54 
TCGA-DU-7013 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7298 TCGA-DU-8158 TCGA-DU-8161 
        8.84        10.36         7.96        18.94         5.10        23.74 
TCGA-DU-8165 TCGA-DU-A5TY TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76R TCGA-DU-A7TD 
       19.13        12.20        11.41        26.76        21.30         7.50 
TCGA-DU-A7TJ TCGA-E1-5311 TCGA-FG-6688 TCGA-FG-6692 TCGA-FG-7643 TCGA-FG-A4MU 
        0.56       134.27        18.77        18.44        20.09        10.72 
TCGA-FG-A4MW TCGA-FG-A70Z TCGA-FG-A87Q TCGA-HT-7471 TCGA-HT-7857 TCGA-HT-7860 
       18.38        10.78         5.72         0.13         0.23         0.49 
TCGA-HT-7882 TCGA-HT-8011 TCGA-HT-8104 TCGA-HT-8110 TCGA-HT-8564 TCGA-HT-A4DS 
        3.72        16.24        12.23        13.78        15.72         0.23 
TCGA-HT-A5R7 TCGA-HT-A5RA TCGA-HT-A5RC TCGA-HT-A617 TCGA-HT-A61C TCGA-HT-A74H 
       20.22        27.35         5.33        16.14        17.65         2.43 
TCGA-HW-A5KK TCGA-KT-A7W1 TCGA-P5-A72U TCGA-QH-A6CS TCGA-QH-A6CV TCGA-QH-A6XC 
       12.76        14.40         0.16        19.33        14.53         5.03 
TCGA-S9-A6TS TCGA-S9-A6U0 TCGA-S9-A6UA TCGA-S9-A6WM TCGA-S9-A7IX TCGA-S9-A7R2 
       62.17        22.95         5.85        19.86        22.32        10.39 
TCGA-S9-A89V TCGA-TM-A7C3 TCGA-TM-A84B TCGA-TM-A84I TCGA-TM-A84J TCGA-VM-A8CD 
       18.71        49.45        24.92        28.08        24.16         7.89 
TCGA-VW-A8FI 
        8.05 

$`DEL PEAK 23(10P11.23) WILD-TYPE`
TCGA-02-0001 TCGA-02-0007 TCGA-02-0010 TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 
       11.77        23.18        35.41        20.71        82.59        20.61 
TCGA-02-0024 TCGA-02-0025 TCGA-02-0026 TCGA-02-0028 TCGA-02-0047 TCGA-02-0058 
       53.10        42.74        24.59        90.58        14.73         8.35 
TCGA-02-0060 TCGA-02-0069 TCGA-02-0080 TCGA-02-0083 TCGA-02-0087 TCGA-02-0104 
        6.02        28.70        89.72        22.72        57.76        65.00 
TCGA-02-0111 TCGA-02-0114 TCGA-02-0258 TCGA-02-0266 TCGA-02-0271 TCGA-02-0326 
       23.18        99.98        16.54        17.72        14.47         7.33 
TCGA-02-0338 TCGA-02-0339 TCGA-02-0432 TCGA-02-2470 TCGA-06-0129 TCGA-06-0142 
       10.59        12.39        47.11        12.92        33.67         2.20 
TCGA-06-0146 TCGA-06-0148 TCGA-06-0160 TCGA-06-0165 TCGA-06-0176 TCGA-06-0178 
       20.09        10.09        11.80        10.65        91.00        88.14 
TCGA-06-0213 TCGA-06-0240 TCGA-06-0397 TCGA-06-0413 TCGA-06-1086 TCGA-06-1805 
        0.53        20.42         9.01         3.16         6.84        33.90 
TCGA-06-1806 TCGA-06-2559 TCGA-06-2569 TCGA-06-2570 TCGA-06-5416 TCGA-06-5858 
       15.32         4.93         0.43        31.50         6.71         6.15 
TCGA-06-6389 TCGA-06-6391 TCGA-06-6694 TCGA-06-6695 TCGA-06-6701 TCGA-06-A5U0 
        7.79         1.48         7.36         8.32         4.96         4.70 
TCGA-06-A7TL TCGA-08-0344 TCGA-08-0350 TCGA-08-0351 TCGA-08-0392 TCGA-08-0516 
        5.42       115.86        29.23        65.33         0.72        19.59 
TCGA-08-0517 TCGA-08-0524 TCGA-12-0773 TCGA-12-0818 TCGA-12-1088 TCGA-12-1089 
       58.68         7.27        43.23        91.76       127.59         5.82 
TCGA-12-1090 TCGA-12-1092 TCGA-12-1099 TCGA-14-1396 TCGA-14-1456 TCGA-14-1458 
        7.59        21.73         4.14         1.12        40.96         6.67 
TCGA-14-1821 TCGA-14-3477 TCGA-14-4157 TCGA-15-1444 TCGA-15-1447 TCGA-16-0846 
       17.79         3.78         3.42        50.53        53.19         3.91 
TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 TCGA-16-1460 TCGA-19-1390 TCGA-19-1787 
       26.07        16.37         4.31         6.41        25.38        12.66 
TCGA-19-1791 TCGA-19-5956 TCGA-26-1442 TCGA-26-1443 TCGA-26-6173 TCGA-27-1838 
        0.13        22.49        31.33         7.13         7.92        11.51 
TCGA-27-2523 TCGA-27-2526 TCGA-28-1755 TCGA-28-1756 TCGA-28-5218 TCGA-32-1973 
       16.08         2.86         1.55         2.83         5.16        21.07 
TCGA-32-1991 TCGA-32-2616 TCGA-32-2632 TCGA-32-4208 TCGA-76-6664 TCGA-CS-4938 
       16.93         7.36         8.84        21.14         7.79         4.70 
TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 
       43.89        18.15        10.62        64.64        40.18         0.10 
TCGA-CS-5396 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 
        9.96        17.95        12.43         8.48         7.56         8.02 
TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 
        7.40         6.61       122.73        81.96        75.25        47.93 
TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 
       72.92        50.86        50.17        36.56        78.28        46.42 
TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF 
       18.84        30.21        46.72        39.78        37.45        33.57 
TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S 
       72.95        31.63        30.12         5.98        31.40        27.45 
TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L 
       27.81        29.23        14.40        18.51        12.10        11.24 
TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 
       17.88        30.74        16.18        31.82        30.31        14.40 
TCGA-DH-5144 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR 
        8.02        42.05        27.81        17.19        17.19        54.25 
TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5849 TCGA-DU-5851 
       13.12        13.38         3.45        18.61        14.56        17.46 
TCGA-DU-5853 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 
       13.38         6.81       182.33        18.94        17.49        15.16 
TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 
      211.17        52.11        22.42        49.02        75.16        46.06 
TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6407 
       65.75         1.22        87.45        11.64       133.74        94.52 
TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 
      114.08         7.96         7.73        62.96       156.23       138.28 
TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7014 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 
       14.99       105.21       117.40        90.77        30.67        26.30 
TCGA-DU-7294 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 
       94.32        44.02        62.01        25.91        60.30        23.31 
TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8166 
       41.98         2.76        14.60        20.68        21.40        16.96 
TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT 
       15.48        14.17        14.24        12.59        15.12         4.96 
TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 
        3.65         5.65         8.65         2.70        77.98         7.23 
TCGA-DU-A6S8 TCGA-DU-A76O TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB 
        5.98         7.13        17.98       124.50        77.88        42.31 
TCGA-DU-A7TC TCGA-DU-A7TG TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 
       23.51        44.42        50.14        67.46        41.13        79.99 
TCGA-E1-5307 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YO TCGA-E1-A7YV 
       57.93        78.21        95.57       130.78        75.02        32.45 
TCGA-E1-A7YW TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 
       36.82        32.35        14.33         0.23         0.20        47.77 
TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 
       25.48        34.36        36.82        14.93        24.99        23.97 
TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-8181 TCGA-FG-8182 
       15.35        17.88        22.55        20.61        12.95        13.68 
TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 
       14.24        16.01        20.09        14.96        22.52        32.61 
TCGA-FG-A4MT TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L 
       38.27        18.71        23.70        14.76        17.82        16.41 
TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A710 TCGA-FG-A711 
       15.02        16.44        22.26        28.54        36.66        48.69 
TCGA-FG-A713 TCGA-FG-A87N TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 
       20.45        13.58        27.52         0.10         6.67        11.54 
TCGA-HT-7470 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 
       40.11         0.03        16.54         3.75        17.42         6.54 
TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 
       24.26         6.38        40.34        75.19        95.93       106.95 
TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 
      172.77         4.01         5.03        29.85        23.18       122.47 
TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 
        4.57        17.29         3.16        22.06        45.99        56.09 
TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 
       57.60         0.23        14.27         0.16        16.24         0.76 
TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 
       44.68         6.05        42.74         0.10        31.69        14.96 
TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 
        0.10         0.10         2.96        17.52         6.90        14.53 
TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7858 TCGA-HT-7873 TCGA-HT-7874 
       39.48        19.23        39.09        50.63        23.61        37.15 
TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7884 
        0.33         0.13         3.68         5.33        35.47        11.28 
TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 
       31.43         1.64         9.40        63.55         0.10        37.87 
TCGA-HT-8019 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 
       33.01         6.25         0.10         0.46         2.50         5.56 
TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8563 TCGA-HT-A4DV TCGA-HT-A5R5 
        0.23        29.59        34.19        28.27        26.04         0.13 
TCGA-HT-A5R9 TCGA-HT-A5RB TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A618 
        0.07         0.10         2.70        16.93         1.81        16.83 
TCGA-HT-A619 TCGA-HT-A61B TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O 
       21.40        17.52        10.52        15.35        11.05         0.10 
TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7493 
       29.92        19.89         8.32        19.23        40.18        35.90 
TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ 
        4.31        21.70        21.60        19.59        17.82        20.35 
TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-P5-A5EV 
       20.81        20.71        19.00        42.77        14.40         0.23 
TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 
        6.71         1.64         2.37         2.30         4.11         5.88 
TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z 
        7.63         0.76         1.28        10.42        13.25        11.64 
TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V 
        0.20         9.01        13.61        15.16         2.53        12.62 
TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CU TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY 
       15.85        14.04        14.83        13.61        12.23         2.20 
TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 
        9.17        10.29        14.53        16.34        16.73         1.91 
TCGA-QH-A6XA TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO 
       16.50        11.08        12.99        88.83        94.03        32.65 
TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 
       59.38        30.87         5.46         9.90        28.08         2.07 
TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX 
       19.59        30.67        87.12        18.77        37.84        34.49 
TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 
       31.33        28.70        17.62        23.64        32.61        16.08 
TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG 
       98.24        95.93       106.39        69.50        72.59        80.12 
TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP 
       32.45        84.99        31.10        15.91        18.61        15.16 
TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 
       14.07        36.13         7.92        23.51         7.13        20.02 
TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY 
        8.19         2.04        17.03        15.06        13.12        28.37 
TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 
       13.02       169.84        99.06        30.05        98.63        31.59 
TCGA-S9-A89Z TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84C 
       11.97        48.33        49.32        34.78        48.39        16.18 
TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O 
       59.05        40.64        30.44        40.83        24.79        33.24 
TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RH TCGA-TQ-A7RW 
       25.38        18.61        14.93        23.80        15.98        26.99 
TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CE TCGA-VM-A8CH 
       43.04        30.08        13.51         0.10        35.93        23.47 
TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 
       37.05        16.01        23.21        51.06        13.32        43.96 
TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       39.88        43.40        45.80        46.88        37.71        20.81 

  DEL PEAK 23(10P11.23) MUTATED DEL PEAK 23(10P11.23) WILD-TYPE 
                           0.10                            0.03 
  DEL PEAK 23(10P11.23) MUTATED DEL PEAK 23(10P11.23) WILD-TYPE 
                         134.27                          211.17 
  DEL PEAK 23(10P11.23) MUTATED DEL PEAK 23(10P11.23) WILD-TYPE 
                          12.10                           18.66 
[1] "0.1 - 134.3 (12.1)" "0.0 - 211.2 (18.7)"
[1] "hr=" "6.1"
D55V2, continuous
D55V3, binary
                                 cls
clus                                0   1
  DEL PEAK 23(10P11.23) MUTATED   469  73
  DEL PEAK 23(10P11.23) WILD-TYPE 101 399
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 23(10P11.23) MUTATED    469   73
  DEL PEAK 23(10P11.23) WILD-TYPE  101  399
                        clus
vv                       DEL PEAK 23(10P11.23) MUTATED
  BRAIN                                            469
  CENTRAL NERVOUS SYSTEM                            73
                        clus
vv                       DEL PEAK 23(10P11.23) WILD-TYPE
  BRAIN                                              101
  CENTRAL NERVOUS SYSTEM                             399
[1] 2 2
[1] FALSE
D55V4, binary
                                 cls
clus                                0   1
  DEL PEAK 23(10P11.23) MUTATED   210 332
  DEL PEAK 23(10P11.23) WILD-TYPE 220 280
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 23(10P11.23) MUTATED    210  332
  DEL PEAK 23(10P11.23) WILD-TYPE  220  280
        clus
vv       DEL PEAK 23(10P11.23) MUTATED DEL PEAK 23(10P11.23) WILD-TYPE
  FEMALE                           210                             220
  MALE                             332                             280
[1] 2 2
[1] FALSE
D55V5, continuous
                                 vv
clus                              ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  DEL PEAK 23(10P11.23) MUTATED            45                            19
  DEL PEAK 23(10P11.23) WILD-TYPE         131                             8
                                 vv
clus                              OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  DEL PEAK 23(10P11.23) MUTATED                 12                16
  DEL PEAK 23(10P11.23) WILD-TYPE              106               162
                                 vv
clus                              TREATED PRIMARY GBM
  DEL PEAK 23(10P11.23) MUTATED                    10
  DEL PEAK 23(10P11.23) WILD-TYPE                   8
                                 vv
clus                              UNTREATED PRIMARY (DE NOVO) GBM
  DEL PEAK 23(10P11.23) MUTATED                               440
  DEL PEAK 23(10P11.23) WILD-TYPE                              85
D55V6, multiclass
                                 clus
vv                                DEL PEAK 23(10P11.23) MUTATED
  ASTROCYTOMA                                                45
  GLIOBLASTOMA MULTIFORME (GBM)                              19
  OLIGOASTROCYTOMA                                           12
  OLIGODENDROGLIOMA                                          16
  TREATED PRIMARY GBM                                        10
  UNTREATED PRIMARY (DE NOVO) GBM                           440
                                 clus
vv                                DEL PEAK 23(10P11.23) WILD-TYPE
  ASTROCYTOMA                                                 131
  GLIOBLASTOMA MULTIFORME (GBM)                                 8
  OLIGOASTROCYTOMA                                            106
  OLIGODENDROGLIOMA                                           162
  TREATED PRIMARY GBM                                           8
  UNTREATED PRIMARY (DE NOVO) GBM                              85
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D55V7, binary
                                 cls
clus                                0   1
  DEL PEAK 23(10P11.23) MUTATED   324 218
  DEL PEAK 23(10P11.23) WILD-TYPE 150 350
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 23(10P11.23) MUTATED    324  218
  DEL PEAK 23(10P11.23) WILD-TYPE  150  350
     clus
vv    DEL PEAK 23(10P11.23) MUTATED DEL PEAK 23(10P11.23) WILD-TYPE
  NO                            324                             150
  YES                           218                             350
[1] 2 2
[1] FALSE
                                 vv
clus                              AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 23(10P11.23) MUTATED                                  1     9
  DEL PEAK 23(10P11.23) WILD-TYPE                                0    12
                                 vv
clus                              BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 23(10P11.23) MUTATED                          47   463
  DEL PEAK 23(10P11.23) WILD-TYPE                        17   459
D55V8, multiclass
                                  clus
vv                                 DEL PEAK 23(10P11.23) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                             1
  ASIAN                                                        9
  BLACK OR AFRICAN AMERICAN                                   47
  WHITE                                                      463
                                  clus
vv                                 DEL PEAK 23(10P11.23) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                               0
  ASIAN                                                         12
  BLACK OR AFRICAN AMERICAN                                     17
  WHITE                                                        459
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D55V9, binary
                                 cls
clus                                0   1
  DEL PEAK 23(10P11.23) MUTATED    10 451
  DEL PEAK 23(10P11.23) WILD-TYPE  20 440
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 23(10P11.23) MUTATED     10  451
  DEL PEAK 23(10P11.23) WILD-TYPE   20  440
                        clus
vv                       DEL PEAK 23(10P11.23) MUTATED
  HISPANIC OR LATINO                                10
  NOT HISPANIC OR LATINO                           451
                        clus
vv                       DEL PEAK 23(10P11.23) WILD-TYPE
  HISPANIC OR LATINO                                  20
  NOT HISPANIC OR LATINO                             440
[1] 2 2
[1] FALSE

Clustering(56) Variable = DEL PEAK 24(10Q23.31) MUTATION ANALYSIS
D56V1, survival
                                 sevent
clus2                               0   1
  DEL PEAK 24(10Q23.31) MUTATED   142 466
  DEL PEAK 24(10Q23.31) WILD-TYPE 338  93
  DEL PEAK 24(10Q23.31) MUTATED DEL PEAK 24(10Q23.31) WILD-TYPE 
                            608                             431 
  DEL PEAK 24(10Q23.31) MUTATED DEL PEAK 24(10Q23.31) WILD-TYPE 
                            466                              93 
$`DEL PEAK 24(10Q23.31) MUTATED`
TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 TCGA-02-0011 
        4.73        18.35        23.18        10.59        35.41        20.71 
TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0026 
       82.59        20.61        87.06        77.65        20.12        24.59 
TCGA-02-0027 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 
       12.16         2.83        14.14         3.62        10.72        10.52 
TCGA-02-0043 TCGA-02-0046 TCGA-02-0048 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 
       18.31         6.87         3.22        12.59         6.54         2.50 
TCGA-02-0057 TCGA-02-0059 TCGA-02-0064 TCGA-02-0068 TCGA-02-0070 TCGA-02-0071 
       19.86         9.57        19.73        26.43        25.05         5.49 
TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 
       10.19        20.84        27.25        22.72        12.62        51.32 
TCGA-02-0086 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 
        8.81        16.96         3.48        27.02        65.00        11.67 
TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 
       17.65        23.18        92.65        15.65        48.95        16.54 
TCGA-02-0260 TCGA-02-0269 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 
       16.93        10.75         3.98        13.87        14.20        15.95 
TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0330 TCGA-02-0332 
       12.23         9.90         7.73        10.62        15.91        25.71 
TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0422 TCGA-02-0430 TCGA-02-0440 
        4.37        25.12        10.59        14.50        10.55        11.34 
TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 TCGA-02-2483 TCGA-02-2485 
        9.27        16.21         3.35        16.80        15.32        15.45 
TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 
       20.32         2.70         6.15        20.38        47.61         6.94 
TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 
        3.98        22.72        33.67        12.95        25.35        14.30 
TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0143 
       26.70        24.23        11.90         0.20        10.29        11.74 
TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 
        2.33        20.09        17.79        10.09         8.61        19.46 
TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 
       46.59        12.33        13.94        10.45         3.19        10.82 
TCGA-06-0159 TCGA-06-0162 TCGA-06-0164 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 
        9.44         3.42        56.91         5.85        19.66         3.29 
TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0177 TCGA-06-0179 
       13.12         4.47         3.22         4.04         4.18        20.25 
TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 
        3.65        69.90        73.84        27.22        44.58        15.42 
TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 
       10.42        38.96         4.67         7.40         5.56         0.39 
TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 
        7.66         8.42         7.63         7.40        11.84         0.53 
TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 
       15.02        24.16         0.72        19.82        13.64        13.32 
TCGA-06-0241 TCGA-06-0394 TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 TCGA-06-0412 
       48.69        10.82         0.26        72.36         4.70         9.57 
TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 
       35.11        12.62         5.75         5.75         9.80         2.10 
TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 
       23.57        14.20        26.40        46.88         7.86         2.70 
TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 
        2.70         0.92        43.46        46.19         5.65         7.17 
TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1087 
       40.41        16.57        20.78        26.76        23.93         4.04 
TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 
       26.79        11.84        15.32        13.61        33.90         1.08 
TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2564 TCGA-06-2565 
       12.49         4.93        17.65        12.56         5.95        16.64 
TCGA-06-2566 TCGA-06-2567 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 
        5.98         4.37        11.74         3.55         8.35         4.54 
TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5418 TCGA-06-5856 TCGA-06-5859 
        8.81         8.98         8.55         2.73         3.75         4.57 
TCGA-06-6388 TCGA-06-6390 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 
        5.23         5.39       120.56         7.36         8.32        12.85 
TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-A5U0 TCGA-06-A5U1 TCGA-06-A6S0 
        4.77         1.55         4.77         4.70         1.87         3.12 
TCGA-06-A6S1 TCGA-06-A7TK TCGA-06-A7TL TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 
        2.56         5.39         5.42        22.68        37.84         4.18 
TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0352 
        1.74         8.42        25.71        12.16         9.80         1.28 
TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 
        8.42        17.95        24.56        31.10        37.58        22.29 
TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 
        3.39        12.23        14.93        18.02        15.35        13.97 
TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 TCGA-08-0518 
        0.72        12.56         4.27        42.15        11.08        19.33 
TCGA-08-0520 TCGA-08-0521 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 
       10.75         4.80        15.98        18.41         7.56        15.35 
TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 
       14.73        12.99        34.92        10.45         7.59        94.78 
TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 
        0.10        38.17        25.97        26.66        12.13         3.65 
TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0775 TCGA-12-0776 
       20.38        28.41        15.06        53.85         7.63         9.73 
TCGA-12-0778 TCGA-12-0780 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 
       14.93        14.86        24.79        18.48        10.62        23.51 
TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 
       27.78        38.76         8.94        20.58       127.59         5.82 
TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 
       33.21        21.73        15.98        12.23        15.85         9.11 
TCGA-12-1097 TCGA-12-1099 TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 
       14.53         4.14        15.65        25.68        14.73         6.77 
TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 
       59.77        44.02        26.93        15.22        10.95        12.69 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 
       34.92        14.53        14.93         3.22         2.04        15.12 
TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 
       11.97         0.95         6.21        23.05         2.24        11.24 
TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0865 
       13.78         3.25         1.35         5.39         2.89        16.50 
TCGA-14-0866 TCGA-14-0867 TCGA-14-0871 TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 
       26.33         2.04        28.93        15.95        19.30         0.79 
TCGA-14-1395 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 
        1.38         3.75        32.05        58.78        23.11         7.10 
TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 
        1.15        30.18         0.92        12.43         0.99         1.97 
TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 
       17.85         7.63         5.88         7.17        17.49         7.96 
TCGA-14-3477 TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 TCGA-15-1449 TCGA-16-0848 
        3.78        13.78        50.53        19.10        13.28        17.59 
TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 
       16.37         4.31        29.03         4.57        10.29        14.01 
TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 
        9.14        21.24        13.97        11.77        21.90         8.61 
TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 
        0.66        14.27         3.39        10.75         9.07         5.95 
TCGA-19-1388 TCGA-19-1389 TCGA-19-1392 TCGA-19-1786 TCGA-19-1789 TCGA-19-1791 
       12.95         4.64         3.65         7.17         3.25         0.13 
TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 
        9.67         4.87         1.08         7.53         0.16         4.08 
TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 
       24.23         7.00         7.04         6.64        17.19         8.02 
TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5959 
       18.90         4.73        12.10         1.78        22.49        16.80 
TCGA-19-5960 TCGA-19-A60I TCGA-19-A6J4 TCGA-19-A6J5 TCGA-26-1438 TCGA-26-1439 
       14.96        17.79         3.98        28.54        10.03        13.87 
TCGA-26-1440 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 
        9.73         7.13         9.37         9.40        14.86         5.49 
TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-26-A7UX 
        8.88        18.97         1.58         7.92         2.33        19.33 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 
        5.06        16.60         9.86        24.23        40.54        21.30 
TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 
       30.05        14.04        11.51        24.76        10.39        10.39 
TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 
       16.08         7.59         2.86        14.40        15.78         0.20 
TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 
        2.53         9.21         8.35         7.63         8.48         1.22 
TCGA-28-1755 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 TCGA-28-2513 
        1.55         0.13         0.66         6.74         4.77         7.30 
TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 
        5.26        14.93        11.28        17.88        14.53        11.77 
TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5219 TCGA-28-5220 
       31.27        23.44        11.01        13.64        22.68        12.76 
TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 
        5.42        15.39        21.07         0.49         0.10        15.85 
TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 
       19.50         1.18         4.67        12.69        14.86        16.93 
TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 
       12.23        20.78        15.02        15.95         8.84        22.78 
TCGA-32-2638 TCGA-32-4208 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 
       25.18        21.14         3.72        12.59        19.86        10.85 
TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 
       19.23         0.85        13.35         8.94         9.53         0.99 
TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-4W-AA9S 
        4.44        11.84         0.20        15.12        12.46         4.14 
TCGA-4W-AA9T TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 
       14.76         3.45        20.91         4.34        14.33         8.22 
TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 
        7.50         4.80         4.54         3.09         3.65         9.17 
TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 
        2.53        10.78        16.70         3.29         2.70        11.38 
TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 
       17.06         8.35        20.98         5.03         0.23         9.27 
TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 TCGA-OX-A56R 
        7.73         7.79         1.61        17.72        26.30         5.92 
TCGA-RR-A6KA TCGA-RR-A6KC TCGA-CS-4941 TCGA-CS-5395 TCGA-CS-5397 TCGA-CS-6186 
        6.28        20.55         7.69        21.01         6.38        17.69 
TCGA-CS-6188 TCGA-CS-6665 TCGA-DB-5277 TCGA-DB-5279 TCGA-DB-A4XF TCGA-DB-A64L 
       23.84        12.43        50.86        44.52        33.57        24.20 
TCGA-DB-A64O TCGA-DB-A75L TCGA-DH-5140 TCGA-DH-A669 TCGA-DH-A7UU TCGA-DU-5847 
       25.48        11.24        19.96        30.21         3.45        18.02 
TCGA-DU-5852 TCGA-DU-5854 TCGA-DU-6396 TCGA-DU-6399 TCGA-DU-6401 TCGA-DU-6402 
        6.74         8.45        75.16        65.75        87.45         7.04 
TCGA-DU-6403 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-7006 TCGA-DU-7008 TCGA-DU-7010 
       11.64        19.89        16.83        11.47       156.23        14.99 
TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7014 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7298 
        6.54         8.84       117.40        10.36         7.96        18.94 
TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8165 TCGA-DU-8167 TCGA-DU-A5TY TCGA-DU-A76K 
        5.10        23.74        19.13        15.48        12.20        11.41 
TCGA-DU-A76L TCGA-DU-A76R TCGA-DU-A7TD TCGA-DU-A7TJ TCGA-E1-5311 TCGA-E1-A7YV 
       26.76        21.30         7.50         0.56       134.27        32.45 
TCGA-FG-6688 TCGA-FG-6692 TCGA-FG-7643 TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A6J3 
       18.77        18.44        20.09        10.72        18.38        22.26 
TCGA-FG-A70Z TCGA-FG-A87Q TCGA-HT-7469 TCGA-HT-7471 TCGA-HT-7476 TCGA-HT-7606 
       10.78         5.72        11.54         0.13         6.54        17.29 
TCGA-HT-7857 TCGA-HT-7860 TCGA-HT-7882 TCGA-HT-8011 TCGA-HT-8104 TCGA-HT-8108 
        0.23         0.49         3.72        16.24        12.23         2.50 
TCGA-HT-8110 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A5R7 TCGA-HT-A5RA TCGA-HT-A5RC 
       13.78        15.72         0.23        20.22        27.35         5.33 
TCGA-HT-A617 TCGA-HT-A61C TCGA-HT-A74H TCGA-HW-8321 TCGA-HW-A5KK TCGA-IK-7675 
       16.14        17.65         2.43        19.59        12.76        19.00 
TCGA-KT-A7W1 TCGA-P5-A5EZ TCGA-P5-A5F2 TCGA-P5-A72U TCGA-QH-A6CS TCGA-QH-A6CV 
       14.40         2.30         7.63         0.16        19.33        14.53 
TCGA-QH-A6CX TCGA-QH-A6XC TCGA-RY-A83X TCGA-RY-A83Z TCGA-S9-A6TS TCGA-S9-A6U0 
       12.23         5.03        30.87         9.90        62.17        22.95 
TCGA-S9-A6UA TCGA-S9-A6WM TCGA-S9-A7IX TCGA-S9-A7J0 TCGA-S9-A7QX TCGA-S9-A7R2 
        5.85        19.86        22.32        20.02        13.12        10.39 
TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A84B TCGA-TM-A84I TCGA-TM-A84J TCGA-VM-A8CD 
       11.97        49.45        24.92        28.08        24.16         7.89 
TCGA-VW-A8FI TCGA-WY-A85D 
        8.05        37.71 

$`DEL PEAK 24(10Q23.31) WILD-TYPE`
TCGA-02-0001 TCGA-02-0024 TCGA-02-0025 TCGA-02-0028 TCGA-02-0047 TCGA-02-0051 
       11.77        53.10        42.74        90.58        14.73        15.09 
TCGA-02-0058 TCGA-02-0060 TCGA-02-0069 TCGA-02-0080 TCGA-02-0087 TCGA-02-0114 
        8.35         6.02        28.70        89.72        57.76        99.98 
TCGA-02-0266 TCGA-02-0271 TCGA-02-0326 TCGA-02-0339 TCGA-02-0432 TCGA-02-2470 
       17.72        14.47         7.33        12.39        47.11        12.92 
TCGA-06-0142 TCGA-06-0160 TCGA-06-0165 TCGA-06-0176 TCGA-06-0178 TCGA-06-0240 
        2.20        11.80        10.65        91.00        88.14        20.42 
TCGA-06-0397 TCGA-06-0413 TCGA-06-1086 TCGA-06-1806 TCGA-06-2563 TCGA-06-2569 
        9.01         3.16         6.84        15.32        30.64         0.43 
TCGA-06-2570 TCGA-06-5416 TCGA-06-5858 TCGA-06-6389 TCGA-06-6391 TCGA-06-6701 
       31.50         6.71         6.15         7.79         1.48         4.96 
TCGA-08-0344 TCGA-08-0350 TCGA-08-0351 TCGA-08-0516 TCGA-08-0517 TCGA-08-0524 
      115.86        29.23        65.33        19.59        58.68         7.27 
TCGA-12-0773 TCGA-12-0818 TCGA-12-1090 TCGA-12-1098 TCGA-14-1396 TCGA-14-1456 
       43.23        91.76         7.59         3.98         1.12        40.96 
TCGA-14-1458 TCGA-14-1821 TCGA-14-4157 TCGA-15-1447 TCGA-16-0846 TCGA-16-0849 
        6.67        17.79         3.42        53.19         3.91        26.07 
TCGA-16-1460 TCGA-19-1390 TCGA-19-1787 TCGA-19-5958 TCGA-26-1442 TCGA-28-1756 
        6.41        25.38        12.66        14.07        31.33         2.83 
TCGA-28-5218 TCGA-32-2616 TCGA-76-6656 TCGA-CS-4938 TCGA-CS-4942 TCGA-CS-4943 
        5.16         7.36         4.83         4.70        43.89        18.15 
TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5396 TCGA-CS-6290 
       10.62        64.64        40.18         0.10         9.96        17.95 
TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 
        8.48         7.56         8.02         7.40         6.61       122.73 
TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5278 TCGA-DB-5280 
       81.96        75.25        47.93        72.92        50.17        36.56 
TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD 
       78.28        46.42        18.84        30.21        46.72        39.78 
TCGA-DB-A4XE TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R 
       37.45        72.95        31.63        30.12         5.98        31.40 
TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K 
       27.45        27.81        29.23        14.40        18.51        12.10 
TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 
       17.88        30.74        16.18        31.82        30.31        14.40 
TCGA-DH-5144 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR 
        8.02        42.05        27.81        17.19        17.19        54.25 
TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UV TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5853 
       13.12        13.38        18.61        14.56        17.46        13.38 
TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 
        6.81       182.33        18.94        17.49        15.16       211.17 
TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6397 TCGA-DU-6400 TCGA-DU-6404 
       52.11        22.42        49.02        46.06         1.22       133.74 
TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7007 TCGA-DU-7009 
       94.52       114.08         7.96         7.73        62.96       138.28 
TCGA-DU-7011 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7294 TCGA-DU-7299 
      105.21        90.77        30.67        26.30        94.32        44.02 
TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 
       62.01        25.91        60.30        23.31        41.98         2.76 
TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8166 TCGA-DU-8168 TCGA-DU-A5TP 
       14.60        20.68        21.40        16.96        14.17        14.24 
TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A6S2 
       12.59        15.12         4.96         3.65         5.65         8.65 
TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76O TCGA-DU-A7T6 
        2.70        77.98         7.23         5.98         7.13        17.98 
TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TG TCGA-E1-5302 
      124.50        77.88        42.31        23.51        44.42        50.14 
TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5318 TCGA-E1-5319 
       67.46        41.13        79.99        57.93        78.21        95.57 
TCGA-E1-5322 TCGA-E1-A7YO TCGA-E1-A7YW TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 
      130.78        75.02        36.82        32.35        14.33         0.23 
TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6689 
        0.20        47.77        25.48        34.36        36.82        14.93 
TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7638 TCGA-FG-7641 
       24.99        23.97        15.35        17.88        22.55        20.61 
TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 
       12.95        13.68        14.24        16.01        20.09        14.96 
TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J 
       22.52        32.61        38.27        18.71        23.70        14.76 
TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A70Y TCGA-FG-A710 
       17.82        16.41        15.02        16.44        28.54        36.66 
TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 
       48.69        20.45        13.58        27.52         0.10         6.67 
TCGA-HT-7470 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7477 
       40.11         0.03        16.54         3.75        17.42        24.26 
TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 
        6.38        40.34        75.19        95.93       106.95       172.77 
TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 
        4.01         5.03        29.85        23.18       122.47         4.57 
TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 
        3.16        22.06        45.99        56.09        57.60         0.23 
TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 
       14.27         0.16        16.24         0.76        44.68         6.05 
TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 
       42.74         0.10        31.69        14.96         0.10         0.10 
TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 
        2.96        17.52         6.90        14.53        39.48        19.23 
TCGA-HT-7856 TCGA-HT-7858 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 
       39.09        50.63        23.61        37.15         0.33         0.13 
TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 
        3.68         5.33        35.47        11.28        31.43         1.64 
TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8105 
        9.40        63.55         0.10        37.87        33.01         6.25 
TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8109 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 
        0.10         0.46         5.56         0.23        29.59        34.19 
TCGA-HT-8563 TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R9 TCGA-HT-A5RB TCGA-HT-A614 
       28.27        26.04         0.13         0.07         0.10         2.70 
TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61B TCGA-HT-A74J 
       16.93         1.81        16.83        21.40        17.52        10.52 
TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 
       15.35        11.05         0.10        29.92        19.89         8.32 
TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7493 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 
       19.23        40.18        35.90         4.31        21.70        21.60 
TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-8125 TCGA-KT-A74X 
       17.82        20.35        20.81        20.71        42.77        14.40 
TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5F0 TCGA-P5-A5F1 
        0.23         6.71         1.64         2.37         4.11         5.88 
TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 
        0.76         1.28        10.42        13.25        11.64         0.20 
TCGA-P5-A731 TCGA-P5-A733 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X 
        9.01        13.61        15.16         2.53        12.62        15.85 
TCGA-QH-A65Z TCGA-QH-A6CU TCGA-QH-A6CW TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 
       14.04        14.83        13.61         2.20         9.17        10.29 
TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A86X 
       14.53        16.34        16.73         1.91        16.50        11.08 
TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83Y 
       12.99        88.83        94.03        32.65        59.38         5.46 
TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TU TCGA-S9-A6TV 
       28.08         2.07        19.59        30.67        87.12        18.77 
TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U1 TCGA-S9-A6U2 
       37.84        34.49        31.33        28.70        17.62        23.64 
TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UB TCGA-S9-A6WD 
       32.61        16.08        98.24        95.93       106.39        69.50 
TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WN 
       72.59        80.12        32.45        84.99        31.10        15.91 
TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IY 
       18.61        15.16        14.07        36.13         7.92        23.51 
TCGA-S9-A7IZ TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QY 
        7.13         8.19         2.04        17.03        15.06        28.37 
TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 
       13.02       169.84        99.06        30.05        98.63        31.59 
TCGA-S9-A89V TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84C 
       18.71        48.33        49.32        34.78        48.39        16.18 
TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O 
       59.05        40.64        30.44        40.83        24.79        33.24 
TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RH TCGA-TQ-A7RW 
       25.38        18.61        14.93        23.80        15.98        26.99 
TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CE TCGA-VM-A8CH 
       43.04        30.08        13.51         0.10        35.93        23.47 
TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 
       37.05        16.01        23.21        51.06        13.32        43.96 
TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85E 
       39.88        43.40        45.80        46.88        20.81 

  DEL PEAK 24(10Q23.31) MUTATED DEL PEAK 24(10Q23.31) WILD-TYPE 
                           0.10                            0.03 
  DEL PEAK 24(10Q23.31) MUTATED DEL PEAK 24(10Q23.31) WILD-TYPE 
                         156.23                          211.17 
  DEL PEAK 24(10Q23.31) MUTATED DEL PEAK 24(10Q23.31) WILD-TYPE 
                         12.215                          18.840 
[1] "0.1 - 156.2 (12.2)" "0.0 - 211.2 (18.8)"
[1] "hr=" "6.7"
D56V2, continuous
D56V3, binary
                                 cls
clus                                0   1
  DEL PEAK 24(10Q23.31) MUTATED   507 102
  DEL PEAK 24(10Q23.31) WILD-TYPE  63 370
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 24(10Q23.31) MUTATED    507  102
  DEL PEAK 24(10Q23.31) WILD-TYPE   63  370
                        clus
vv                       DEL PEAK 24(10Q23.31) MUTATED
  BRAIN                                            507
  CENTRAL NERVOUS SYSTEM                           102
                        clus
vv                       DEL PEAK 24(10Q23.31) WILD-TYPE
  BRAIN                                               63
  CENTRAL NERVOUS SYSTEM                             370
[1] 2 2
[1] FALSE
D56V4, binary
                                 cls
clus                                0   1
  DEL PEAK 24(10Q23.31) MUTATED   249 360
  DEL PEAK 24(10Q23.31) WILD-TYPE 181 252
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 24(10Q23.31) MUTATED    249  360
  DEL PEAK 24(10Q23.31) WILD-TYPE  181  252
        clus
vv       DEL PEAK 24(10Q23.31) MUTATED DEL PEAK 24(10Q23.31) WILD-TYPE
  FEMALE                           249                             181
  MALE                             360                             252
[1] 2 2
[1] FALSE
D56V5, continuous
                                 vv
clus                              ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  DEL PEAK 24(10Q23.31) MUTATED            60                            22
  DEL PEAK 24(10Q23.31) WILD-TYPE         116                             5
                                 vv
clus                              OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  DEL PEAK 24(10Q23.31) MUTATED                 17                25
  DEL PEAK 24(10Q23.31) WILD-TYPE              101               153
                                 vv
clus                              TREATED PRIMARY GBM
  DEL PEAK 24(10Q23.31) MUTATED                    13
  DEL PEAK 24(10Q23.31) WILD-TYPE                   5
                                 vv
clus                              UNTREATED PRIMARY (DE NOVO) GBM
  DEL PEAK 24(10Q23.31) MUTATED                               472
  DEL PEAK 24(10Q23.31) WILD-TYPE                              53
D56V6, multiclass
                                 clus
vv                                DEL PEAK 24(10Q23.31) MUTATED
  ASTROCYTOMA                                                60
  GLIOBLASTOMA MULTIFORME (GBM)                              22
  OLIGOASTROCYTOMA                                           17
  OLIGODENDROGLIOMA                                          25
  TREATED PRIMARY GBM                                        13
  UNTREATED PRIMARY (DE NOVO) GBM                           472
                                 clus
vv                                DEL PEAK 24(10Q23.31) WILD-TYPE
  ASTROCYTOMA                                                 116
  GLIOBLASTOMA MULTIFORME (GBM)                                 5
  OLIGOASTROCYTOMA                                            101
  OLIGODENDROGLIOMA                                           153
  TREATED PRIMARY GBM                                           5
  UNTREATED PRIMARY (DE NOVO) GBM                              53
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D56V7, binary
                                 cls
clus                                0   1
  DEL PEAK 24(10Q23.31) MUTATED   360 249
  DEL PEAK 24(10Q23.31) WILD-TYPE 114 319
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 24(10Q23.31) MUTATED    360  249
  DEL PEAK 24(10Q23.31) WILD-TYPE  114  319
     clus
vv    DEL PEAK 24(10Q23.31) MUTATED DEL PEAK 24(10Q23.31) WILD-TYPE
  NO                            360                             114
  YES                           249                             319
[1] 2 2
[1] FALSE
                                 vv
clus                              AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 24(10Q23.31) MUTATED                                  1    11
  DEL PEAK 24(10Q23.31) WILD-TYPE                                0    10
                                 vv
clus                              BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 24(10Q23.31) MUTATED                          50   525
  DEL PEAK 24(10Q23.31) WILD-TYPE                        14   397
D56V8, multiclass
                                  clus
vv                                 DEL PEAK 24(10Q23.31) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                             1
  ASIAN                                                       11
  BLACK OR AFRICAN AMERICAN                                   50
  WHITE                                                      525
                                  clus
vv                                 DEL PEAK 24(10Q23.31) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                               0
  ASIAN                                                         10
  BLACK OR AFRICAN AMERICAN                                     14
  WHITE                                                        397
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D56V9, binary
                                 cls
clus                                0   1
  DEL PEAK 24(10Q23.31) MUTATED    14 511
  DEL PEAK 24(10Q23.31) WILD-TYPE  16 380
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 24(10Q23.31) MUTATED     14  511
  DEL PEAK 24(10Q23.31) WILD-TYPE   16  380
                        clus
vv                       DEL PEAK 24(10Q23.31) MUTATED
  HISPANIC OR LATINO                                14
  NOT HISPANIC OR LATINO                           511
                        clus
vv                       DEL PEAK 24(10Q23.31) WILD-TYPE
  HISPANIC OR LATINO                                  16
  NOT HISPANIC OR LATINO                             380
[1] 2 2
[1] FALSE

Clustering(57) Variable = DEL PEAK 25(10Q26.3) MUTATION ANALYSIS
D57V1, survival
                                sevent
clus2                              0   1
  DEL PEAK 25(10Q26.3) MUTATED   169 471
  DEL PEAK 25(10Q26.3) WILD-TYPE 311  88
  DEL PEAK 25(10Q26.3) MUTATED DEL PEAK 25(10Q26.3) WILD-TYPE 
                           640                            399 
  DEL PEAK 25(10Q26.3) MUTATED DEL PEAK 25(10Q26.3) WILD-TYPE 
                           471                             88 
$`DEL PEAK 25(10Q26.3) MUTATED`
TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 TCGA-02-0011 
        4.73        18.35        23.18        10.59        35.41        20.71 
TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0025 
       82.59        20.61        87.06        77.65        20.12        42.74 
TCGA-02-0026 TCGA-02-0027 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 
       24.59        12.16         2.83        14.14         3.62        10.72 
TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 
       10.52        18.31         6.87         3.22        15.09        12.59 
TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 TCGA-02-0064 
        6.54         2.50        19.86         8.35         9.57        19.73 
TCGA-02-0068 TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 
       26.43        25.05         5.49        10.19        20.84        27.25 
TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0089 TCGA-02-0099 
       22.72        12.62        51.32         8.81        16.96         3.48 
TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 TCGA-02-0113 TCGA-02-0115 
       27.02        65.00        11.67        17.65        92.65        15.65 
TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0269 TCGA-02-0281 TCGA-02-0285 
       48.95        16.54        16.93        10.75         3.98        13.87 
TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 
       14.20        15.95        12.23         9.90         7.73        10.62 
TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0422 TCGA-02-0430 
       15.91        25.71         4.37        25.12        14.50        10.55 
TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 
       47.11        11.34         9.27        16.21         3.35        16.80 
TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 
       15.32        15.45        20.32         2.70         6.15        20.38 
TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 
       47.61         6.94         3.98        22.72        33.67        12.95 
TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 
       25.35        14.30        26.70        24.23        11.90         0.20 
TCGA-06-0141 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 
       10.29        11.74         2.33        20.09        17.79        10.09 
TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 
        8.61        19.46        46.59        12.33        13.94        10.45 
TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0162 TCGA-06-0164 TCGA-06-0166 
        3.19        10.82         9.44         3.42        56.91         5.85 
TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 
       19.66         3.29        13.12         4.47         3.22         4.04 
TCGA-06-0177 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 
        4.18        20.25         3.65        69.90        73.84        27.22 
TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 
       44.58        15.42        10.42        38.96         4.67         7.40 
TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 
        5.56         0.39         7.66         8.42         7.63         7.40 
TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 
       11.84         0.53        15.02        24.16         0.72        19.82 
TCGA-06-0237 TCGA-06-0238 TCGA-06-0241 TCGA-06-0394 TCGA-06-0402 TCGA-06-0409 
       13.64        13.32        48.69        10.82         0.26        72.36 
TCGA-06-0410 TCGA-06-0412 TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
        4.70         9.57        35.11        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1084 TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 
       23.93         4.04        26.79        11.84        15.32        13.61 
TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 
       33.90         1.08        12.49         4.93        17.65        12.56 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-5408 
       30.64         5.95        16.64         5.98         4.37        11.74 
TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 
        3.55         8.35         4.54         8.81         8.98         8.55 
TCGA-06-5418 TCGA-06-5856 TCGA-06-5859 TCGA-06-6388 TCGA-06-6390 TCGA-06-6693 
        2.73         3.75         4.57         5.23         5.39       120.56 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-A5U0 
        8.32        12.85         4.77         1.55         4.77         4.70 
TCGA-06-A5U1 TCGA-06-A6S0 TCGA-06-A6S1 TCGA-06-A7TK TCGA-06-A7TL TCGA-08-0244 
        1.87         3.12         2.56         5.39         5.42        22.68 
TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 
        4.18       115.86         1.74         8.42        25.71        12.16 
TCGA-08-0349 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 
        9.80         1.28         8.42        17.95        24.56        31.10 
TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 
       37.58        22.29         3.39        12.23        14.93        18.02 
TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 
       15.35        13.97         0.72        12.56         4.27        42.15 
TCGA-08-0514 TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0525 
       11.08        58.68        19.33        10.75         4.80        15.98 
TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
       18.41         7.56        15.35        14.73        12.99        34.92 
TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 
       10.45         7.59        94.78         0.10        38.17        25.97 
TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 
       26.66        12.13         3.65        20.38        28.41        15.06 
TCGA-12-0772 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0819 
       53.85         7.63         9.73        14.93        14.86        24.79 
TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 
       18.48        10.62        23.51        27.78        38.76         8.94 
TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 
       20.58       127.59         5.82        33.21        21.73        15.98 
TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-12-1598 
       12.23        15.85         9.11        14.53         3.98        15.65 
TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 
       25.68        14.73         6.77        59.77        44.02        26.93 
TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 
       15.22        10.95        12.69        34.92        14.53        14.93 
TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 
        3.22         2.04        15.12        11.97         0.95         6.21 
TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 
       23.05         2.24        11.24        13.78         3.25         1.35 
TCGA-14-0817 TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 TCGA-14-0867 TCGA-14-1034 
        5.39         2.89        16.50        26.33         2.04        15.95 
TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 
       19.30         0.79         1.38         3.75        32.05        58.78 
TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 TCGA-14-1459 
       23.11         7.10         1.15        30.18         0.92        12.43 
TCGA-14-1794 TCGA-14-1795 TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 
        0.99         1.97        17.85         7.63         5.88         7.17 
TCGA-14-2554 TCGA-14-2555 TCGA-14-3477 TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 
       17.49         7.96         3.78         3.42        13.78        50.53 
TCGA-15-1446 TCGA-15-1449 TCGA-16-0846 TCGA-16-0848 TCGA-16-0850 TCGA-16-0861 
       19.10        13.28         3.91        17.59        16.37         4.31 
TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 
       29.03         4.57        10.29        14.01         9.14        21.24 
TCGA-16-1063 TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 
       13.97        11.77        21.90         8.61         0.66        14.27 
TCGA-19-0964 TCGA-19-1386 TCGA-19-1387 TCGA-19-1389 TCGA-19-1390 TCGA-19-1392 
        3.39         9.07         5.95         4.64        25.38         3.65 
TCGA-19-1786 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 
        7.17         3.25         0.13         9.67         4.87         1.08 
TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 
        7.53         0.16         4.08        24.23         7.00         7.04 
TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 
        6.64        17.19         8.02        18.90         4.73        12.10 
TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-19-A60I 
        1.78        22.49        14.07        16.80        14.96        17.79 
TCGA-19-A6J4 TCGA-19-A6J5 TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 TCGA-26-1443 
        3.98        28.54        10.03        13.87         9.73         7.13 
TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 
        9.37         9.40        14.86         5.49         8.88        18.97 
TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-26-A7UX TCGA-27-1830 TCGA-27-1832 
        1.58         7.92         2.33        19.33         5.06         9.86 
TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 
       24.23        40.54        21.30        30.05        14.04        11.51 
TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 
       24.76        10.39        10.39         7.59         2.86        14.40 
TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 
       15.78         0.20         2.53         9.21         8.35         7.63 
TCGA-28-1752 TCGA-28-1753 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 
        8.48         1.22         0.13         0.66         6.74         4.77 
TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 
        7.30         5.26        14.93        11.28        17.88        14.53 
TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5219 
       11.77        31.27        23.44        11.01        13.64        22.68 
TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 
       12.76         5.42        15.39        21.07         0.49         0.10 
TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 
       15.85        19.50         1.18         4.67        12.69        14.86 
TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2634 
       16.93        12.23        20.78        15.02        15.95        22.78 
TCGA-32-2638 TCGA-32-4208 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 
       25.18        21.14         3.72        12.59        19.86        10.85 
TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 
       19.23         0.85        13.35         8.94         9.53         0.99 
TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-4W-AA9S 
        4.44        11.84         0.20        15.12        12.46         4.14 
TCGA-4W-AA9T TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 
       14.76         3.45        20.91         4.34        14.33         8.22 
TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 
        7.50         4.80         4.54         3.09         3.65         9.17 
TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 
        2.53        10.78        16.70         3.29         2.70        11.38 
TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 
       17.06         8.35        20.98         4.83         5.03         0.23 
TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        9.27         7.73         7.79         1.61        17.72        26.30 
TCGA-OX-A56R TCGA-RR-A6KA TCGA-RR-A6KC TCGA-CS-4941 TCGA-CS-5395 TCGA-CS-5397 
        5.92         6.28        20.55         7.69        21.01         6.38 
TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6665 TCGA-DB-5277 TCGA-DB-5279 TCGA-DB-A4XF 
       17.69        23.84        12.43        50.86        44.52        33.57 
TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A75L TCGA-DH-5140 TCGA-DH-A669 TCGA-DH-A66B 
       24.20        25.48        11.24        19.96        30.21        42.05 
TCGA-DH-A66D TCGA-DH-A7UU TCGA-DU-5847 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 
       27.81         3.45        18.02         6.74        13.38         8.45 
TCGA-DU-5872 TCGA-DU-6396 TCGA-DU-6399 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 
       17.49        75.16        65.75        87.45         7.04        11.64 
TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-7006 TCGA-DU-7007 
       19.89        16.83        94.52       114.08        11.47        62.96 
TCGA-DU-7008 TCGA-DU-7010 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7014 TCGA-DU-7015 
      156.23        14.99         6.54         8.84       117.40        90.77 
TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7298 TCGA-DU-7301 TCGA-DU-8158 TCGA-DU-8161 
       10.36         7.96        18.94        25.91         5.10        23.74 
TCGA-DU-8162 TCGA-DU-8165 TCGA-DU-A5TY TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76R 
       14.60        19.13        12.20        11.41        26.76        21.30 
TCGA-DU-A7TD TCGA-DU-A7TJ TCGA-E1-5311 TCGA-E1-A7YV TCGA-FG-6688 TCGA-FG-6692 
        7.50         0.56       134.27        32.45        18.77        18.44 
TCGA-FG-7643 TCGA-FG-8188 TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A6J3 TCGA-FG-A70Z 
       20.09        14.96        10.72        18.38        22.26        10.78 
TCGA-FG-A711 TCGA-FG-A87N TCGA-FG-A87Q TCGA-HT-7469 TCGA-HT-7471 TCGA-HT-7473 
       48.69        13.58         5.72        11.54         0.13        16.54 
TCGA-HT-7476 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7606 TCGA-HT-7688 TCGA-HT-7690 
        6.54       172.77         4.01        17.29        31.69         0.10 
TCGA-HT-7693 TCGA-HT-7857 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7879 TCGA-HT-7882 
       17.52         0.23         0.49        23.61         3.68         3.72 
TCGA-HT-7902 TCGA-HT-8011 TCGA-HT-8104 TCGA-HT-8108 TCGA-HT-8110 TCGA-HT-8563 
       31.43        16.24        12.23         2.50        13.78        28.27 
TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A5R7 TCGA-HT-A5RA TCGA-HT-A5RC TCGA-HT-A617 
       15.72         0.23        20.22        27.35         5.33        16.14 
TCGA-HT-A61C TCGA-HT-A74H TCGA-HW-8321 TCGA-HW-A5KK TCGA-IK-7675 TCGA-KT-A7W1 
       17.65         2.43        19.59        12.76        19.00        14.40 
TCGA-P5-A5EZ TCGA-P5-A5F2 TCGA-P5-A72U TCGA-P5-A72W TCGA-QH-A6CS TCGA-QH-A6CV 
        2.30         7.63         0.16        10.42        19.33        14.53 
TCGA-QH-A6CX TCGA-QH-A6X3 TCGA-QH-A6X9 TCGA-QH-A6XC TCGA-RY-A83X TCGA-RY-A83Z 
       12.23        10.29         1.91         5.03        30.87         9.90 
TCGA-S9-A6TS TCGA-S9-A6U0 TCGA-S9-A6UB TCGA-S9-A6WM TCGA-S9-A6WQ TCGA-S9-A7IS 
       62.17        22.95       106.39        19.86        14.07         7.92 
TCGA-S9-A7IX TCGA-S9-A7J0 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7R2 TCGA-S9-A7R3 
       22.32        20.02        15.06        13.12        10.39        99.06 
TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84I TCGA-TM-A84J 
       11.97        49.45        48.39        24.92        28.08        24.16 
TCGA-VM-A8CD TCGA-VW-A8FI TCGA-WH-A86K TCGA-WY-A85D 
        7.89         8.05        13.32        37.71 

$`DEL PEAK 25(10Q26.3) WILD-TYPE`
TCGA-02-0001 TCGA-02-0024 TCGA-02-0028 TCGA-02-0047 TCGA-02-0060 TCGA-02-0069 
       11.77        53.10        90.58        14.73         6.02        28.70 
TCGA-02-0080 TCGA-02-0087 TCGA-02-0111 TCGA-02-0114 TCGA-02-0266 TCGA-02-0271 
       89.72        57.76        23.18        99.98        17.72        14.47 
TCGA-02-0326 TCGA-02-0338 TCGA-02-0339 TCGA-02-2470 TCGA-06-0142 TCGA-06-0160 
        7.33        10.59        12.39        12.92         2.20        11.80 
TCGA-06-0165 TCGA-06-0176 TCGA-06-0178 TCGA-06-0240 TCGA-06-0397 TCGA-06-0413 
       10.65        91.00        88.14        20.42         9.01         3.16 
TCGA-06-1086 TCGA-06-1806 TCGA-06-2569 TCGA-06-2570 TCGA-06-5416 TCGA-06-5858 
        6.84        15.32         0.43        31.50         6.71         6.15 
TCGA-06-6389 TCGA-06-6391 TCGA-06-6694 TCGA-06-6701 TCGA-08-0245 TCGA-08-0350 
        7.79         1.48         7.36         4.96        37.84        29.23 
TCGA-08-0351 TCGA-08-0516 TCGA-08-0524 TCGA-12-0773 TCGA-12-0818 TCGA-12-1090 
       65.33        19.59         7.27        43.23        91.76         7.59 
TCGA-12-1099 TCGA-14-0871 TCGA-14-1396 TCGA-14-1456 TCGA-14-1458 TCGA-14-1821 
        4.14        28.93         1.12        40.96         6.67        17.79 
TCGA-15-1447 TCGA-16-0849 TCGA-16-1460 TCGA-19-1385 TCGA-19-1388 TCGA-19-1787 
       53.19        26.07         6.41        10.75        12.95        12.66 
TCGA-26-1442 TCGA-27-1831 TCGA-27-2523 TCGA-28-1755 TCGA-28-1756 TCGA-28-5218 
       31.33        16.60        16.08         1.55         2.83         5.16 
TCGA-32-2616 TCGA-32-2632 TCGA-CS-4938 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 
        7.36         8.84         4.70        43.89        18.15        10.62 
TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5396 TCGA-CS-6290 TCGA-CS-6666 
       64.64        40.18         0.10         9.96        17.95         8.48 
TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 
        7.56         8.02         7.40         6.61       122.73        81.96 
TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5278 TCGA-DB-5280 TCGA-DB-5281 
       75.25        47.93        72.92        50.17        36.56        78.28 
TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE 
       46.42        18.84        30.21        46.72        39.78        37.45 
TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S 
       72.95        31.63        30.12         5.98        31.40        27.45 
TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75M 
       27.81        29.23        14.40        18.51        12.10        17.88 
TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 
       30.74        16.18        31.82        30.31        14.40         8.02 
TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UV 
       17.19        17.19        54.25        13.12        13.38        18.61 
TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5874 
       14.56        17.46         6.81       182.33        18.94        15.16 
TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6397 TCGA-DU-6400 
      211.17        52.11        22.42        49.02        46.06         1.22 
TCGA-DU-6404 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7009 TCGA-DU-7011 TCGA-DU-7018 
      133.74         7.96         7.73       138.28       105.21        30.67 
TCGA-DU-7019 TCGA-DU-7294 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7302 TCGA-DU-7304 
       26.30        94.32        44.02        62.01        60.30        23.31 
TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8166 TCGA-DU-8167 
       41.98         2.76        20.68        21.40        16.96        15.48 
TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU 
       14.17        14.24        12.59        15.12         4.96         3.65 
TCGA-DU-A5TW TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 
        5.65         8.65         2.70        77.98         7.23         5.98 
TCGA-DU-A76O TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC 
        7.13        17.98       124.50        77.88        42.31        23.51 
TCGA-DU-A7TG TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 
       44.42        50.14        67.46        41.13        79.99        57.93 
TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YO TCGA-E1-A7YW TCGA-E1-A7Z6 
       78.21        95.57       130.78        75.02        36.82        32.35 
TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 
       14.33         0.23         0.20        47.77        25.48        34.36 
TCGA-FG-5965 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-7634 TCGA-FG-7636 
       36.82        14.93        24.99        23.97        15.35        17.88 
TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 
       22.55        20.61        12.95        13.68        14.24        16.01 
TCGA-FG-8187 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MX TCGA-FG-A4MY 
       20.09        22.52        32.61        38.27        18.71        23.70 
TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A70Y 
       14.76        17.82        16.41        15.02        16.44        28.54 
TCGA-FG-A710 TCGA-FG-A713 TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7470 
       36.66        20.45        27.52         0.10         6.67        40.11 
TCGA-HT-7472 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 
        0.03         3.75        17.42        24.26         6.38        40.34 
TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 
       75.19        95.93       106.95         5.03        29.85        23.18 
TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 
      122.47         4.57         3.16        22.06        45.99        56.09 
TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 
       57.60         0.23        14.27         0.16        16.24         0.76 
TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7689 TCGA-HT-7691 
       44.68         6.05        42.74         0.10        14.96         0.10 
TCGA-HT-7692 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 
        2.96         6.90        14.53        39.48        19.23        39.09 
TCGA-HT-7858 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7880 TCGA-HT-7881 
       50.63        37.15         0.33         0.13         5.33        35.47 
TCGA-HT-7884 TCGA-HT-8010 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 
       11.28         1.64         9.40        63.55         0.10        37.87 
TCGA-HT-8019 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8109 TCGA-HT-8111 
       33.01         6.25         0.10         0.46         5.56         0.23 
TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R9 TCGA-HT-A5RB 
       29.59        34.19        26.04         0.13         0.07         0.10 
TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61B 
        2.70        16.93         1.81        16.83        21.40        17.52 
TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 
       10.52        15.35        11.05         0.10        29.92        19.89 
TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7493 TCGA-HW-7495 TCGA-HW-8319 
        8.32        19.23        40.18        35.90         4.31        21.70 
TCGA-HW-8320 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-8125 
       21.60        17.82        20.35        20.81        20.71        42.77 
TCGA-KT-A74X TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5F0 
       14.40         0.23         6.71         1.64         2.37         4.11 
TCGA-P5-A5F1 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 
        5.88         0.76         1.28        13.25        11.64         0.20 
TCGA-P5-A731 TCGA-P5-A733 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X 
        9.01        13.61        15.16         2.53        12.62        15.85 
TCGA-QH-A65Z TCGA-QH-A6CU TCGA-QH-A6CW TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X4 
       14.04        14.83        13.61         2.20         9.17        14.53 
TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6XA TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK 
       16.34        16.73        16.50        11.08        12.99        88.83 
TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83Y TCGA-RY-A840 TCGA-RY-A843 
       94.03        32.65        59.38         5.46        28.08         2.07 
TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX 
       19.59        30.67        87.12        18.77        37.84        34.49 
TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 
       31.33        28.70        17.62        23.64        32.61        16.08 
TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG 
       98.24        95.93         5.85        69.50        72.59        80.12 
TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP 
       32.45        84.99        31.10        15.91        18.61        15.16 
TCGA-S9-A7IQ TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 
       36.13        23.51         7.13         8.19         2.04        17.03 
TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 
       28.37        13.02       169.84        30.05        98.63        31.59 
TCGA-S9-A89V TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A84C TCGA-TM-A84F 
       18.71        48.33        49.32        34.78        16.18        59.05 
TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q 
       40.64        30.44        40.83        24.79        33.24        25.38 
TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RH TCGA-TQ-A7RW TCGA-VM-A8C8 
       18.61        14.93        23.80        15.98        26.99        43.04 
TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CE TCGA-VM-A8CH TCGA-VV-A829 
       30.08        13.51         0.10        35.93        23.47        37.05 
TCGA-VV-A86M TCGA-VW-A7QS TCGA-W9-A837 TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A 
       16.01        23.21        51.06        43.96        39.88        43.40 
TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85E 
       45.80        46.88        20.81 

  DEL PEAK 25(10Q26.3) MUTATED DEL PEAK 25(10Q26.3) WILD-TYPE 
                          0.10                           0.03 
  DEL PEAK 25(10Q26.3) MUTATED DEL PEAK 25(10Q26.3) WILD-TYPE 
                        172.77                         211.17 
  DEL PEAK 25(10Q26.3) MUTATED DEL PEAK 25(10Q26.3) WILD-TYPE 
                        12.525                         18.710 
[1] "0.1 - 172.8 (12.5)" "0.0 - 211.2 (18.7)"
[1] "hr=" "5.4"
D57V2, continuous
D57V3, binary
                                cls
clus                               0   1
  DEL PEAK 25(10Q26.3) MUTATED   508 134
  DEL PEAK 25(10Q26.3) WILD-TYPE  62 338
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 25(10Q26.3) MUTATED    508  134
  DEL PEAK 25(10Q26.3) WILD-TYPE   62  338
                        clus
vv                       DEL PEAK 25(10Q26.3) MUTATED
  BRAIN                                           508
  CENTRAL NERVOUS SYSTEM                          134
                        clus
vv                       DEL PEAK 25(10Q26.3) WILD-TYPE
  BRAIN                                              62
  CENTRAL NERVOUS SYSTEM                            338
[1] 2 2
[1] FALSE
D57V4, binary
                                cls
clus                               0   1
  DEL PEAK 25(10Q26.3) MUTATED   265 377
  DEL PEAK 25(10Q26.3) WILD-TYPE 165 235
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 25(10Q26.3) MUTATED    265  377
  DEL PEAK 25(10Q26.3) WILD-TYPE  165  235
        clus
vv       DEL PEAK 25(10Q26.3) MUTATED DEL PEAK 25(10Q26.3) WILD-TYPE
  FEMALE                          265                            165
  MALE                            377                            235
[1] 2 2
[1] FALSE
D57V5, continuous
                                vv
clus                             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  DEL PEAK 25(10Q26.3) MUTATED            72                            22
  DEL PEAK 25(10Q26.3) WILD-TYPE         104                             5
                                vv
clus                             OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  DEL PEAK 25(10Q26.3) MUTATED                 28                34
  DEL PEAK 25(10Q26.3) WILD-TYPE               90               144
                                vv
clus                             TREATED PRIMARY GBM
  DEL PEAK 25(10Q26.3) MUTATED                    14
  DEL PEAK 25(10Q26.3) WILD-TYPE                   4
                                vv
clus                             UNTREATED PRIMARY (DE NOVO) GBM
  DEL PEAK 25(10Q26.3) MUTATED                               472
  DEL PEAK 25(10Q26.3) WILD-TYPE                              53
D57V6, multiclass
                                 clus
vv                                DEL PEAK 25(10Q26.3) MUTATED
  ASTROCYTOMA                                               72
  GLIOBLASTOMA MULTIFORME (GBM)                             22
  OLIGOASTROCYTOMA                                          28
  OLIGODENDROGLIOMA                                         34
  TREATED PRIMARY GBM                                       14
  UNTREATED PRIMARY (DE NOVO) GBM                          472
                                 clus
vv                                DEL PEAK 25(10Q26.3) WILD-TYPE
  ASTROCYTOMA                                                104
  GLIOBLASTOMA MULTIFORME (GBM)                                5
  OLIGOASTROCYTOMA                                            90
  OLIGODENDROGLIOMA                                          144
  TREATED PRIMARY GBM                                          4
  UNTREATED PRIMARY (DE NOVO) GBM                             53
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D57V7, binary
                                cls
clus                               0   1
  DEL PEAK 25(10Q26.3) MUTATED   368 274
  DEL PEAK 25(10Q26.3) WILD-TYPE 106 294
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 25(10Q26.3) MUTATED    368  274
  DEL PEAK 25(10Q26.3) WILD-TYPE  106  294
     clus
vv    DEL PEAK 25(10Q26.3) MUTATED DEL PEAK 25(10Q26.3) WILD-TYPE
  NO                           368                            106
  YES                          274                            294
[1] 2 2
[1] FALSE
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 25(10Q26.3) MUTATED                                  1    11
  DEL PEAK 25(10Q26.3) WILD-TYPE                                0    10
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 25(10Q26.3) MUTATED                          52   556
  DEL PEAK 25(10Q26.3) WILD-TYPE                        12   366
D57V8, multiclass
                                  clus
vv                                 DEL PEAK 25(10Q26.3) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            1
  ASIAN                                                      11
  BLACK OR AFRICAN AMERICAN                                  52
  WHITE                                                     556
                                  clus
vv                                 DEL PEAK 25(10Q26.3) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              0
  ASIAN                                                        10
  BLACK OR AFRICAN AMERICAN                                    12
  WHITE                                                       366
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D57V9, binary
                                cls
clus                               0   1
  DEL PEAK 25(10Q26.3) MUTATED    15 543
  DEL PEAK 25(10Q26.3) WILD-TYPE  15 348
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 25(10Q26.3) MUTATED     15  543
  DEL PEAK 25(10Q26.3) WILD-TYPE   15  348
                        clus
vv                       DEL PEAK 25(10Q26.3) MUTATED
  HISPANIC OR LATINO                               15
  NOT HISPANIC OR LATINO                          543
                        clus
vv                       DEL PEAK 25(10Q26.3) WILD-TYPE
  HISPANIC OR LATINO                                 15
  NOT HISPANIC OR LATINO                            348
[1] 2 2
[1] FALSE

Clustering(58) Variable = DEL PEAK 26(11P15.5) MUTATION ANALYSIS
D58V1, survival
                                sevent
clus2                              0   1
  DEL PEAK 26(11P15.5) MUTATED    96 126
  DEL PEAK 26(11P15.5) WILD-TYPE 384 433
  DEL PEAK 26(11P15.5) MUTATED DEL PEAK 26(11P15.5) WILD-TYPE 
                           222                            817 
  DEL PEAK 26(11P15.5) MUTATED DEL PEAK 26(11P15.5) WILD-TYPE 
                           126                            433 
$`DEL PEAK 26(11P15.5) MUTATED`
TCGA-02-0010 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0024 TCGA-02-0033 
       35.41        82.59        20.61        87.06        53.10         2.83 
TCGA-02-0047 TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0055 TCGA-02-0058 
       14.73         3.22        15.09        12.59         2.50         8.35 
TCGA-02-0059 TCGA-02-0069 TCGA-02-0074 TCGA-02-0075 TCGA-02-0084 TCGA-02-0086 
        9.57        28.70        10.19        20.84        12.62         8.81 
TCGA-02-0087 TCGA-02-0099 TCGA-02-0104 TCGA-02-0113 TCGA-02-0114 TCGA-02-0281 
       57.76         3.48        65.00        92.65        99.98         3.98 
TCGA-02-0332 TCGA-02-0456 TCGA-02-2466 TCGA-02-2483 TCGA-06-0128 TCGA-06-0129 
       25.71         3.35        16.80        15.32        22.72        33.67 
TCGA-06-0146 TCGA-06-0159 TCGA-06-0166 TCGA-06-0174 TCGA-06-0177 TCGA-06-0184 
       20.09         9.44         5.85         3.22         4.18        69.90 
TCGA-06-0192 TCGA-06-0197 TCGA-06-0213 TCGA-06-0216 TCGA-06-0221 TCGA-06-0238 
       38.96         5.56         0.53        24.16        19.82        13.32 
TCGA-06-0409 TCGA-06-0410 TCGA-06-0414 TCGA-06-0649 TCGA-06-0686 TCGA-06-1086 
       72.36         4.70        35.11         2.10        14.20         6.84 
TCGA-06-1800 TCGA-06-1805 TCGA-06-1806 TCGA-06-2558 TCGA-06-2569 TCGA-06-2570 
       26.79        33.90        15.32        12.49         0.43        31.50 
TCGA-06-5408 TCGA-06-5856 TCGA-06-6389 TCGA-06-6694 TCGA-06-A7TK TCGA-06-A7TL 
       11.74         3.75         7.79         7.36         5.39         5.42 
TCGA-08-0245 TCGA-08-0246 TCGA-08-0348 TCGA-08-0351 TCGA-08-0353 TCGA-08-0355 
       37.84         4.18        12.16        65.33         8.42        24.56 
TCGA-08-0375 TCGA-08-0380 TCGA-08-0510 TCGA-08-0517 TCGA-12-0616 TCGA-12-0619 
       12.23        14.93         4.27        58.68        14.73        34.92 
TCGA-12-0691 TCGA-12-0772 TCGA-12-0819 TCGA-12-0822 TCGA-12-0827 TCGA-12-1099 
       12.13        53.85        24.79        23.51        38.76         4.14 
TCGA-12-1602 TCGA-12-3646 TCGA-12-3653 TCGA-14-0740 TCGA-14-0783 TCGA-14-0813 
        6.77        44.02        14.53        11.97         6.21         1.35 
TCGA-14-0817 TCGA-14-0865 TCGA-14-0867 TCGA-14-0871 TCGA-14-1453 TCGA-14-1454 
        5.39        16.50         2.04        28.93         1.15        30.18 
TCGA-14-1459 TCGA-14-1794 TCGA-14-1821 TCGA-14-1823 TCGA-14-3477 TCGA-15-1444 
       12.43         0.99        17.79        17.85         3.78        50.53 
TCGA-15-1447 TCGA-15-1449 TCGA-16-0846 TCGA-16-0848 TCGA-16-0850 TCGA-16-1045 
       53.19        13.28         3.91        17.59        16.37        29.03 
TCGA-19-1387 TCGA-19-1390 TCGA-19-1392 TCGA-19-2623 TCGA-19-5959 TCGA-19-5960 
        5.95        25.38         3.65         7.53        16.80        14.96 
TCGA-19-A6J4 TCGA-26-1439 TCGA-26-1442 TCGA-26-5133 TCGA-27-1830 TCGA-27-2521 
        3.98        13.87        31.33        14.86         5.06        10.39 
TCGA-28-1756 TCGA-28-2502 TCGA-28-2509 TCGA-28-5216 TCGA-32-1973 TCGA-32-1976 
        2.83         0.66         4.77        13.64        21.07         0.49 
TCGA-32-2615 TCGA-32-2632 TCGA-32-4208 TCGA-32-4210 TCGA-32-4719 TCGA-41-3915 
       15.95         8.84        21.14         3.72        10.85        11.84 
TCGA-74-6584 TCGA-76-4934 TCGA-76-6286 TCGA-CS-4943 TCGA-CS-6290 TCGA-CS-6665 
        7.50         2.53        20.98        18.15        17.95        12.43 
TCGA-CS-6666 TCGA-DB-5275 TCGA-DB-5277 TCGA-DB-A64X TCGA-DB-A75L TCGA-DH-5140 
        8.48        47.93        50.86        18.51        11.24        19.96 
TCGA-DH-5142 TCGA-DH-A66D TCGA-DH-A66G TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DU-5851 
       30.31        27.81        17.19        13.38         3.45        17.46 
TCGA-DU-5853 TCGA-DU-6396 TCGA-DU-6408 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 
       13.38        75.16       114.08        11.47        62.96       156.23 
TCGA-DU-7010 TCGA-DU-7014 TCGA-DU-7015 TCGA-DU-7298 TCGA-DU-7309 TCGA-DU-8158 
       14.99       117.40        90.77        18.94         2.76         5.10 
TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TU 
       19.13        16.96        15.48        12.59        15.12         3.65 
TCGA-DU-A6S7 TCGA-DU-A7TA TCGA-E1-5302 TCGA-E1-5304 TCGA-E1-A7YW TCGA-FG-5965 
        7.23        77.88        50.14        41.13        36.82        36.82 
TCGA-FG-6689 TCGA-FG-8188 TCGA-FG-A4MW TCGA-FG-A4MY TCGA-FG-A60L TCGA-HT-7470 
       14.93        14.96        18.38        23.70        16.41        40.11 
TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7601 TCGA-HT-7603 TCGA-HT-7607 TCGA-HT-7676 
       24.26         6.38         5.03        23.18         3.16         0.16 
TCGA-HT-7686 TCGA-HT-7690 TCGA-HT-7693 TCGA-HT-7873 TCGA-HT-7902 TCGA-HT-8013 
       42.74         0.10        17.52        23.61        31.43        63.55 
TCGA-HT-8018 TCGA-HT-8111 TCGA-HT-8114 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A5R7 
       37.87         0.23        34.19        28.27        15.72        20.22 
TCGA-HT-A614 TCGA-HT-A616 TCGA-HT-A618 TCGA-HT-A61B TCGA-HT-A74O TCGA-HW-7493 
        2.70         1.81        16.83        17.52         0.10        35.90 
TCGA-HW-8319 TCGA-IK-7675 TCGA-P5-A5F6 TCGA-QH-A65S TCGA-QH-A6XA TCGA-RY-A83Z 
       21.70        19.00         1.28         2.53        16.50         9.90 
TCGA-S9-A6TV TCGA-S9-A6WM TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7QX TCGA-S9-A7R4 
       18.77        19.86         7.13        20.02        13.12        30.05 
TCGA-S9-A7R7 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A84I 
       98.63        18.71        11.97        49.45        48.33        28.08 
TCGA-TM-A84J TCGA-TQ-A7RH TCGA-WH-A86K TCGA-WY-A859 TCGA-WY-A85C TCGA-WY-A85E 
       24.16        15.98        13.32        39.88        46.88        20.81 

$`DEL PEAK 26(11P15.5) WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0011 
       11.77         4.73        18.35        23.18        10.59        20.71 
TCGA-02-0021 TCGA-02-0023 TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 
       77.65        20.12        42.74        24.59        12.16        90.58 
TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 
       14.14         3.62        10.72        10.52        18.31         6.87 
TCGA-02-0054 TCGA-02-0057 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0070 
        6.54        19.86         6.02        19.73        26.43        25.05 
TCGA-02-0071 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0085 TCGA-02-0089 
        5.49        27.25        89.72        22.72        51.32        16.96 
TCGA-02-0102 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0115 TCGA-02-0116 
       27.02        11.67        17.65        23.18        15.65        48.95 
TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0285 
       16.54        16.93        17.72        10.75        14.47        13.87 
TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 
       14.20        15.95        12.23         9.90         7.73        10.62 
TCGA-02-0326 TCGA-02-0330 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 
        7.33        15.91         4.37        25.12        10.59        12.39 
TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 
       14.50        10.55        47.11        11.34         9.27        16.21 
TCGA-02-2470 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 
       12.92        15.45        20.32         2.70         6.15        20.38 
TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 
       47.61         6.94         3.98        12.95        25.35        14.30 
TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 
       26.70        24.23        11.90         0.20        10.29         2.20 
TCGA-06-0143 TCGA-06-0145 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 
       11.74         2.33        17.79        10.09         8.61        19.46 
TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 
       46.59        12.33        13.94        10.45         3.19        10.82 
TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0168 TCGA-06-0169 
       11.80         3.42        56.91        10.65        19.66         3.29 
TCGA-06-0171 TCGA-06-0173 TCGA-06-0175 TCGA-06-0176 TCGA-06-0178 TCGA-06-0179 
       13.12         4.47         4.04        91.00        88.14        20.25 
TCGA-06-0182 TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 
        3.65        73.84        27.22        44.58        15.42        10.42 
TCGA-06-0194 TCGA-06-0195 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 
        4.67         7.40         0.39         7.66         8.42         7.63 
TCGA-06-0210 TCGA-06-0211 TCGA-06-0214 TCGA-06-0219 TCGA-06-0237 TCGA-06-0240 
        7.40        11.84        15.02         0.72        13.64        20.42 
TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0412 TCGA-06-0413 
       48.69        10.82         9.01         0.26         9.57         3.16 
TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0650 TCGA-06-0743 
       12.62         5.75         5.75         9.80        23.57        26.40 
TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 
       46.88         7.86         2.70         2.70         0.92        43.46 
TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 
       46.19         5.65         7.17        40.41        16.57        20.78 
TCGA-06-0939 TCGA-06-1084 TCGA-06-1087 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 
       26.76        23.93         4.04        11.84        15.32        13.61 
TCGA-06-2557 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 
        1.08         4.93        17.65        12.56        30.64         5.95 
TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 
       16.64         5.98         4.37         3.55         8.35         4.54 
TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 TCGA-06-5858 
        8.81         8.98         8.55         6.71         2.73         6.15 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6695 
        4.57         5.23         5.39         1.48       120.56         8.32 
TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-06-A5U0 
       12.85         4.77         1.55         4.77         4.96         4.70 
TCGA-06-A5U1 TCGA-06-A6S0 TCGA-06-A6S1 TCGA-08-0244 TCGA-08-0344 TCGA-08-0345 
        1.87         3.12         2.56        22.68       115.86         1.74 
TCGA-08-0346 TCGA-08-0347 TCGA-08-0349 TCGA-08-0350 TCGA-08-0352 TCGA-08-0354 
        8.42        25.71         9.80        29.23         1.28        17.95 
TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0386 TCGA-08-0389 
       31.10        37.58        22.29         3.39        18.02        15.35 
TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 
       13.97         0.72        12.56        42.15        11.08        19.59 
TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 
       19.33        10.75         4.80         7.27        15.98        18.41 
TCGA-08-0531 TCGA-12-0615 TCGA-12-0618 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 
        7.56        15.35        12.99        10.45         7.59        94.78 
TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0692 TCGA-12-0703 
        0.10        38.17        25.97        26.66         3.65        20.38 
TCGA-12-0707 TCGA-12-0769 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 
       28.41        15.06        43.23         7.63         9.73        14.93 
TCGA-12-0780 TCGA-12-0818 TCGA-12-0820 TCGA-12-0821 TCGA-12-0826 TCGA-12-0828 
       14.86        91.76        18.48        10.62        27.78         8.94 
TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 
       20.58       127.59         5.82         7.59        33.21        21.73 
TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 
       15.98        12.23        15.85         9.11        14.53         3.98 
TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 TCGA-12-3644 TCGA-12-3648 TCGA-12-3649 
       15.65        25.68        14.73        59.77        26.93        15.22 
TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 
       10.95        12.69        34.92        14.93         3.22         2.04 
TCGA-14-0736 TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 
       15.12         0.95        23.05         2.24        11.24        13.78 
TCGA-14-0812 TCGA-14-0862 TCGA-14-0866 TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 
        3.25         2.89        26.33        15.95        19.30         0.79 
TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 
        1.38         1.12         3.75        32.05        58.78        23.11 
TCGA-14-1452 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1795 TCGA-14-1825 
        7.10         0.92        40.96         6.67         1.97         7.63 
TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-4157 TCGA-15-0742 
        5.88         7.17        17.49         7.96         3.42        13.78 
TCGA-15-1446 TCGA-16-0849 TCGA-16-0861 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 
       19.10        26.07         4.31         4.57        10.29        14.01 
TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 
        9.14        21.24        13.97         6.41        11.77        21.90 
TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 
        8.61         0.66        14.27         3.39        10.75         9.07 
TCGA-19-1388 TCGA-19-1389 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 
       12.95         4.64         7.17        12.66         3.25         0.13 
TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 
        9.67         4.87         1.08         0.16         4.08        24.23 
TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 
        7.00         7.04         6.64        17.19         8.02        18.90 
TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 TCGA-19-A60I 
        4.73        12.10         1.78        22.49        14.07        17.79 
TCGA-19-A6J5 TCGA-26-1438 TCGA-26-1440 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 
       28.54        10.03         9.73         7.13         9.37         9.40 
TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 
        5.49         8.88        18.97         1.58         7.92         2.33 
TCGA-26-A7UX TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 
       19.33        16.60         9.86        24.23        40.54        21.30 
TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2523 
       30.05        14.04        11.51        24.76        10.39        16.08 
TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 
        7.59         2.86        14.40        15.78         0.20         2.53 
TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 
        9.21         8.35         7.63         8.48         1.22         1.55 
TCGA-28-1757 TCGA-28-2506 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 
        0.13         6.74         7.30         5.26        14.93        11.28 
TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 
       17.88        14.53        11.77        31.27        23.44        11.01 
TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 
        5.16        22.68        12.76         5.42        15.39         0.10 
TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 
       15.85        19.50         1.18         4.67        12.69        14.86 
TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2616 TCGA-32-2634 
       16.93        12.23        20.78        15.02         7.36        22.78 
TCGA-32-2638 TCGA-32-4211 TCGA-32-4213 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 
       25.18        12.59        19.86        19.23         0.85        13.35 
TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-4097 TCGA-41-5651 
        8.94         9.53         0.99         4.44         0.20        15.12 
TCGA-41-6646 TCGA-4W-AA9S TCGA-4W-AA9T TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 
       12.46         4.14        14.76         3.45        20.91         4.34 
TCGA-74-6578 TCGA-74-6581 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 
       14.33         8.22         4.80         4.54         3.09         3.65 
TCGA-76-4931 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 
        9.17        10.78        16.70         3.29         2.70        11.38 
TCGA-76-6282 TCGA-76-6285 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 
       17.06         8.35         4.83         5.03         0.23         9.27 
TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 TCGA-OX-A56R 
        7.73         7.79         1.61        17.72        26.30         5.92 
TCGA-RR-A6KA TCGA-RR-A6KC TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4944 
        6.28        20.55         4.70         7.69        43.89        10.62 
TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 
       64.64        40.18         0.10        21.01         9.96         6.38 
TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 
       17.69        23.84         7.56         8.02         7.40         6.61 
TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5276 TCGA-DB-5278 TCGA-DB-5279 
      122.73        81.96        75.25        72.92        50.17        44.52 
TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC 
       36.56        78.28        46.42        18.84        30.21        46.72 
TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L 
       39.78        37.45        33.57        72.95        31.63        24.20 
TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U 
       25.48        30.12         5.98        31.40        27.45        27.81 
TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A75K TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P 
       29.23        14.40        12.10        17.88        30.74        16.18 
TCGA-DH-5141 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66F 
       31.82        14.40         8.02        30.21        42.05        17.19 
TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5852 
       54.25        13.12        18.61        18.02        14.56         6.74 
TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 
        8.45         6.81       182.33        18.94        17.49        15.16 
TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6397 TCGA-DU-6399 
      211.17        52.11        22.42        49.02        46.06        65.75 
TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 
        1.22        87.45         7.04        11.64       133.74        19.89 
TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7009 TCGA-DU-7011 
       16.83        94.52         7.96         7.73       138.28       105.21 
TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 
        6.54         8.84        30.67        26.30        10.36         7.96 
TCGA-DU-7294 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 
       94.32        44.02        62.01        25.91        60.30        23.31 
TCGA-DU-7306 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8168 
       41.98        23.74        14.60        20.68        21.40        14.17 
TCGA-DU-A5TP TCGA-DU-A5TT TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 
       14.24         4.96         5.65        12.20         8.65         2.70 
TCGA-DU-A6S6 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R 
       77.98         5.98        11.41        26.76         7.13        21.30 
TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG 
       17.98       124.50        42.31        23.51         7.50        44.42 
TCGA-DU-A7TJ TCGA-E1-5303 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 
        0.56        67.46        79.99        57.93       134.27        78.21 
TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YO TCGA-E1-A7YV TCGA-E1-A7Z6 TCGA-EZ-7264 
       95.57       130.78        75.02        32.45        32.35        14.33 
TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-6688 
        0.23         0.20        47.77        25.48        34.36        18.77 
TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7638 
       24.99        23.97        18.44        15.35        17.88        22.55 
TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 
       20.61        20.09        12.95        13.68        14.24        16.01 
TCGA-FG-8187 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MX 
       20.09        22.52        32.61        38.27        10.72        18.71 
TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y 
       14.76        17.82        15.02        16.44        22.26        28.54 
TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q 
       10.78        36.66        48.69        20.45        13.58         5.72 
TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7471 TCGA-HT-7472 
       27.52         0.10         6.67        11.54         0.13         0.03 
TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7479 TCGA-HT-7480 
       16.54         3.75        17.42         6.54        40.34        75.19 
TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7602 TCGA-HT-7604 
       95.93       106.95       172.77         4.01        29.85       122.47 
TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 
        4.57        17.29        22.06        45.99        56.09        57.60 
TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 
        0.23        14.27        16.24         0.76        44.68         6.05 
TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7694 
        0.10        31.69        14.96         0.10         2.96         6.90 
TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 
       14.53        39.48        19.23        39.09         0.23        50.63 
TCGA-HT-7860 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 
        0.49        37.15         0.33         0.13         3.68         5.33 
TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 
       35.47         3.72        11.28         1.64        16.24         9.40 
TCGA-HT-8015 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 
        0.10        33.01        12.23         6.25         0.10         0.46 
TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8113 TCGA-HT-A4DS TCGA-HT-A4DV 
        2.50         5.56        13.78        29.59         0.23        26.04 
TCGA-HT-A5R5 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A615 
        0.13         0.07        27.35         0.10         5.33        16.93 
TCGA-HT-A617 TCGA-HT-A619 TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K 
       16.14        21.40        17.65         2.43        10.52        15.35 
TCGA-HT-A74L TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 
       11.05        29.92        19.89         8.32        19.23        40.18 
TCGA-HW-7495 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK 
        4.31        21.60        19.59        17.82        20.35        12.76 
TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV 
       20.81        20.71        42.77        14.40        14.40         0.23 
TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 
        6.71         1.64         2.37         2.30         4.11         5.88 
TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z 
        7.63         0.76         0.16        10.42        13.25        11.64 
TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-QH-A65R TCGA-QH-A65V TCGA-QH-A65X 
        0.20         9.01        13.61        15.16        12.62        15.85 
TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX 
       14.04        19.33        14.83        14.53        13.61        12.23 
TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 
        2.20         9.17        10.29        14.53        16.34        16.73 
TCGA-QH-A6X9 TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML 
        1.91         5.03        11.08        12.99        88.83        94.03 
TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A840 TCGA-RY-A843 
       32.65        59.38        30.87         5.46        28.08         2.07 
TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TW TCGA-S9-A6TX 
       19.59        30.67        62.17        87.12        37.84        34.49 
TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 
       31.33        28.70        22.95        17.62        23.64        32.61 
TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD 
       16.08        98.24        95.93         5.85       106.39        69.50 
TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WN 
       72.59        80.12        32.45        84.99        31.10        15.91 
TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX 
       18.61        15.16        14.07        36.13         7.92        22.32 
TCGA-S9-A7IY TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QY 
       23.51         8.19         2.04        17.03        15.06        28.37 
TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R8 TCGA-TM-A7C5 
       13.02       169.84        10.39        99.06        31.59        49.32 
TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G 
       34.78        48.39        24.92        16.18        59.05        40.64 
TCGA-TM-A84H TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R 
       30.44        40.83        24.79        33.24        25.38        18.61 
TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RW TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA 
       14.93        23.80        26.99        43.04        30.08        13.51 
TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M 
        0.10         7.89        35.93        23.47        37.05        16.01 
TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WY-A858 TCGA-WY-A85A TCGA-WY-A85B 
       23.21         8.05        51.06        43.96        43.40        45.80 
TCGA-WY-A85D 
       37.71 

  DEL PEAK 26(11P15.5) MUTATED DEL PEAK 26(11P15.5) WILD-TYPE 
                          0.10                           0.03 
  DEL PEAK 26(11P15.5) MUTATED DEL PEAK 26(11P15.5) WILD-TYPE 
                        156.23                         211.17 
  DEL PEAK 26(11P15.5) MUTATED DEL PEAK 26(11P15.5) WILD-TYPE 
                        15.835                         14.400 
[1] "0.1 - 156.2 (15.8)" "0.0 - 211.2 (14.4)"
[1] "hr=" "1"  
D58V2, continuous
D58V3, binary
                                cls
clus                               0   1
  DEL PEAK 26(11P15.5) MUTATED   129  94
  DEL PEAK 26(11P15.5) WILD-TYPE 441 378
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 26(11P15.5) MUTATED    129   94
  DEL PEAK 26(11P15.5) WILD-TYPE  441  378
                        clus
vv                       DEL PEAK 26(11P15.5) MUTATED
  BRAIN                                           129
  CENTRAL NERVOUS SYSTEM                           94
                        clus
vv                       DEL PEAK 26(11P15.5) WILD-TYPE
  BRAIN                                             441
  CENTRAL NERVOUS SYSTEM                            378
[1] 2 2
[1] FALSE
D58V4, binary
                                cls
clus                               0   1
  DEL PEAK 26(11P15.5) MUTATED   105 118
  DEL PEAK 26(11P15.5) WILD-TYPE 325 494
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 26(11P15.5) MUTATED    105  118
  DEL PEAK 26(11P15.5) WILD-TYPE  325  494
        clus
vv       DEL PEAK 26(11P15.5) MUTATED DEL PEAK 26(11P15.5) WILD-TYPE
  FEMALE                          105                            325
  MALE                            118                            494
[1] 2 2
[1] FALSE
D58V5, continuous
                                vv
clus                             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  DEL PEAK 26(11P15.5) MUTATED            51                             6
  DEL PEAK 26(11P15.5) WILD-TYPE         125                            21
                                vv
clus                             OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  DEL PEAK 26(11P15.5) MUTATED                 26                17
  DEL PEAK 26(11P15.5) WILD-TYPE               92               161
                                vv
clus                             TREATED PRIMARY GBM
  DEL PEAK 26(11P15.5) MUTATED                     6
  DEL PEAK 26(11P15.5) WILD-TYPE                  12
                                vv
clus                             UNTREATED PRIMARY (DE NOVO) GBM
  DEL PEAK 26(11P15.5) MUTATED                               117
  DEL PEAK 26(11P15.5) WILD-TYPE                             408
D58V6, multiclass
                                 clus
vv                                DEL PEAK 26(11P15.5) MUTATED
  ASTROCYTOMA                                               51
  GLIOBLASTOMA MULTIFORME (GBM)                              6
  OLIGOASTROCYTOMA                                          26
  OLIGODENDROGLIOMA                                         17
  TREATED PRIMARY GBM                                        6
  UNTREATED PRIMARY (DE NOVO) GBM                          117
                                 clus
vv                                DEL PEAK 26(11P15.5) WILD-TYPE
  ASTROCYTOMA                                                125
  GLIOBLASTOMA MULTIFORME (GBM)                               21
  OLIGOASTROCYTOMA                                            92
  OLIGODENDROGLIOMA                                          161
  TREATED PRIMARY GBM                                         12
  UNTREATED PRIMARY (DE NOVO) GBM                            408
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D58V7, binary
                                cls
clus                               0   1
  DEL PEAK 26(11P15.5) MUTATED   109 114
  DEL PEAK 26(11P15.5) WILD-TYPE 365 454
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 26(11P15.5) MUTATED    109  114
  DEL PEAK 26(11P15.5) WILD-TYPE  365  454
     clus
vv    DEL PEAK 26(11P15.5) MUTATED DEL PEAK 26(11P15.5) WILD-TYPE
  NO                           109                            365
  YES                          114                            454
[1] 2 2
[1] FALSE
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 26(11P15.5) MUTATED                                  0     3
  DEL PEAK 26(11P15.5) WILD-TYPE                                1    18
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 26(11P15.5) MUTATED                          13   200
  DEL PEAK 26(11P15.5) WILD-TYPE                        51   722
D58V8, multiclass
                                  clus
vv                                 DEL PEAK 26(11P15.5) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            0
  ASIAN                                                       3
  BLACK OR AFRICAN AMERICAN                                  13
  WHITE                                                     200
                                  clus
vv                                 DEL PEAK 26(11P15.5) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              1
  ASIAN                                                        18
  BLACK OR AFRICAN AMERICAN                                    51
  WHITE                                                       722
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D58V9, binary
                                cls
clus                               0   1
  DEL PEAK 26(11P15.5) MUTATED     6 190
  DEL PEAK 26(11P15.5) WILD-TYPE  24 701
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 26(11P15.5) MUTATED      6  190
  DEL PEAK 26(11P15.5) WILD-TYPE   24  701
                        clus
vv                       DEL PEAK 26(11P15.5) MUTATED
  HISPANIC OR LATINO                                6
  NOT HISPANIC OR LATINO                          190
                        clus
vv                       DEL PEAK 26(11P15.5) WILD-TYPE
  HISPANIC OR LATINO                                 24
  NOT HISPANIC OR LATINO                            701
[1] 2 2
[1] FALSE

Clustering(59) Variable = DEL PEAK 27(11P15.1) MUTATION ANALYSIS
D59V1, survival
                                sevent
clus2                              0   1
  DEL PEAK 27(11P15.1) MUTATED    65 104
  DEL PEAK 27(11P15.1) WILD-TYPE 415 455
  DEL PEAK 27(11P15.1) MUTATED DEL PEAK 27(11P15.1) WILD-TYPE 
                           169                            870 
  DEL PEAK 27(11P15.1) MUTATED DEL PEAK 27(11P15.1) WILD-TYPE 
                           104                            455 
$`DEL PEAK 27(11P15.1) MUTATED`
TCGA-02-0010 TCGA-02-0024 TCGA-02-0033 TCGA-02-0047 TCGA-02-0048 TCGA-02-0052 
       35.41        53.10         2.83        14.73         3.22        12.59 
TCGA-02-0055 TCGA-02-0059 TCGA-02-0069 TCGA-02-0074 TCGA-02-0075 TCGA-02-0084 
        2.50         9.57        28.70        10.19        20.84        12.62 
TCGA-02-0086 TCGA-02-0087 TCGA-02-0099 TCGA-02-0113 TCGA-02-0114 TCGA-02-0281 
        8.81        57.76         3.48        92.65        99.98         3.98 
TCGA-02-0332 TCGA-02-0456 TCGA-02-2466 TCGA-06-0128 TCGA-06-0159 TCGA-06-0166 
       25.71         3.35        16.80        22.72         9.44         5.85 
TCGA-06-0174 TCGA-06-0177 TCGA-06-0184 TCGA-06-0192 TCGA-06-0197 TCGA-06-0216 
        3.22         4.18        69.90        38.96         5.56        24.16 
TCGA-06-0238 TCGA-06-0409 TCGA-06-0410 TCGA-06-0414 TCGA-06-0649 TCGA-06-0686 
       13.32        72.36         4.70        35.11         2.10        14.20 
TCGA-06-1086 TCGA-06-1800 TCGA-06-1805 TCGA-06-1806 TCGA-06-2558 TCGA-06-2569 
        6.84        26.79        33.90        15.32        12.49         0.43 
TCGA-06-2570 TCGA-06-5856 TCGA-06-6389 TCGA-06-6694 TCGA-06-A7TK TCGA-06-A7TL 
       31.50         3.75         7.79         7.36         5.39         5.42 
TCGA-08-0245 TCGA-08-0353 TCGA-08-0510 TCGA-12-0616 TCGA-12-0619 TCGA-12-0772 
       37.84         8.42         4.27        14.73        34.92        53.85 
TCGA-12-0819 TCGA-12-0822 TCGA-12-0827 TCGA-12-1099 TCGA-12-1602 TCGA-12-3646 
       24.79        23.51        38.76         4.14         6.77        44.02 
TCGA-12-3653 TCGA-14-0740 TCGA-14-0783 TCGA-14-0817 TCGA-14-0865 TCGA-14-0867 
       14.53        11.97         6.21         5.39        16.50         2.04 
TCGA-14-0871 TCGA-14-1453 TCGA-14-1454 TCGA-14-1459 TCGA-14-1794 TCGA-14-1821 
       28.93         1.15        30.18        12.43         0.99        17.79 
TCGA-14-1823 TCGA-14-3477 TCGA-15-1447 TCGA-15-1449 TCGA-16-0846 TCGA-16-0848 
       17.85         3.78        53.19        13.28         3.91        17.59 
TCGA-16-0850 TCGA-16-1045 TCGA-19-1387 TCGA-19-1390 TCGA-19-1392 TCGA-19-2623 
       16.37        29.03         5.95        25.38         3.65         7.53 
TCGA-19-5959 TCGA-19-5960 TCGA-19-A6J4 TCGA-26-1439 TCGA-26-1442 TCGA-26-5133 
       16.80        14.96         3.98        13.87        31.33        14.86 
TCGA-27-1830 TCGA-28-1756 TCGA-28-2502 TCGA-28-2509 TCGA-28-5216 TCGA-32-1976 
        5.06         2.83         0.66         4.77        13.64         0.49 
TCGA-32-2615 TCGA-32-2632 TCGA-32-4210 TCGA-32-4719 TCGA-41-3915 TCGA-74-6584 
       15.95         8.84         3.72        10.85        11.84         7.50 
TCGA-76-4934 TCGA-76-6286 TCGA-CS-6665 TCGA-DB-5277 TCGA-DH-5140 TCGA-DH-5142 
        2.53        20.98        12.43        50.86        19.96        30.31 
TCGA-DH-A66D TCGA-DH-A66G TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DU-6396 TCGA-DU-6408 
       27.81        17.19        13.38         3.45        75.16       114.08 
TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7010 TCGA-DU-7014 TCGA-DU-7015 
       11.47        62.96       156.23        14.99       117.40        90.77 
TCGA-DU-8158 TCGA-DU-8165 TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TU TCGA-E1-5302 
        5.10        19.13        12.59        15.12         3.65        50.14 
TCGA-E1-5304 TCGA-E1-A7YV TCGA-FG-5963 TCGA-FG-5965 TCGA-FG-6689 TCGA-FG-A4MW 
       41.13        32.45        25.48        36.82        14.93        18.38 
TCGA-FG-A60L TCGA-HT-7470 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7601 TCGA-HT-7607 
       16.41        40.11        24.26         6.38         5.03         3.16 
TCGA-HT-7686 TCGA-HT-7693 TCGA-HT-7873 TCGA-HT-7902 TCGA-HT-8013 TCGA-HT-8018 
       42.74        17.52        23.61        31.43        63.55        37.87 
TCGA-HT-8111 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A5R7 TCGA-HT-A614 TCGA-HT-A616 
        0.23        28.27        15.72        20.22         2.70         1.81 
TCGA-HT-A618 TCGA-HT-A61B TCGA-HW-8319 TCGA-IK-7675 TCGA-P5-A5F6 TCGA-P5-A72Z 
       16.83        17.52        21.70        19.00         1.28        11.64 
TCGA-QH-A65S TCGA-RY-A83Z TCGA-S9-A6WM TCGA-S9-A7J0 TCGA-S9-A7R7 TCGA-S9-A89V 
        2.53         9.90        19.86        20.02        98.63        18.71 
TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A84I TCGA-TM-A84J TCGA-TQ-A7RH 
       11.97        49.45        48.33        28.08        24.16        15.98 
TCGA-WY-A859 
       39.88 

$`DEL PEAK 27(11P15.1) WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0011 
       11.77         4.73        18.35        23.18        10.59        20.71 
TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0025 
       82.59        20.61        87.06        77.65        20.12        42.74 
TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 
       24.59        12.16        90.58        14.14         3.62        10.72 
TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0051 TCGA-02-0054 TCGA-02-0057 
       10.52        18.31         6.87        15.09         6.54        19.86 
TCGA-02-0058 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0070 TCGA-02-0071 
        8.35         6.02        19.73        26.43        25.05         5.49 
TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0085 TCGA-02-0089 TCGA-02-0102 
       27.25        89.72        22.72        51.32        16.96        27.02 
TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0115 TCGA-02-0116 
       65.00        11.67        17.65        23.18        15.65        48.95 
TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0285 
       16.54        16.93        17.72        10.75        14.47        13.87 
TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 
       14.20        15.95        12.23         9.90         7.73        10.62 
TCGA-02-0326 TCGA-02-0330 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 
        7.33        15.91         4.37        25.12        10.59        12.39 
TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 
       14.50        10.55        47.11        11.34         9.27        16.21 
TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 
       12.92        15.32        15.45        20.32         2.70         6.15 
TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0129 TCGA-06-0130 
       20.38        47.61         6.94         3.98        33.67        12.95 
TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 
       25.35        14.30        26.70        24.23        11.90         0.20 
TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 
       10.29         2.20        11.74         2.33        20.09        17.79 
TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 
       10.09         8.61        19.46        46.59        12.33        13.94 
TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 
       10.45         3.19        10.82        11.80         3.42        56.91 
TCGA-06-0165 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0175 
       10.65        19.66         3.29        13.12         4.47         4.04 
TCGA-06-0176 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0185 TCGA-06-0187 
       91.00        88.14        20.25         3.65        73.84        27.22 
TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0194 TCGA-06-0195 TCGA-06-0201 
       44.58        15.42        10.42         4.67         7.40         0.39 
TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 
        7.66         8.42         7.63         7.40        11.84         0.53 
TCGA-06-0214 TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 TCGA-06-0240 TCGA-06-0241 
       15.02         0.72        19.82        13.64        20.42        48.69 
TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0412 TCGA-06-0413 TCGA-06-0644 
       10.82         9.01         0.26         9.57         3.16        12.62 
TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0650 TCGA-06-0743 TCGA-06-0744 
        5.75         5.75         9.80        23.57        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1084 TCGA-06-1087 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-2557 
       23.93         4.04        11.84        15.32        13.61         1.08 
TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 
        4.93        17.65        12.56        30.64         5.95        16.64 
TCGA-06-2566 TCGA-06-2567 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 
        5.98         4.37        11.74         3.55         8.35         4.54 
TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 TCGA-06-5858 
        8.81         8.98         8.55         6.71         2.73         6.15 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6695 
        4.57         5.23         5.39         1.48       120.56         8.32 
TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-06-A5U0 
       12.85         4.77         1.55         4.77         4.96         4.70 
TCGA-06-A5U1 TCGA-06-A6S0 TCGA-06-A6S1 TCGA-08-0244 TCGA-08-0246 TCGA-08-0344 
        1.87         3.12         2.56        22.68         4.18       115.86 
TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 
        1.74         8.42        25.71        12.16         9.80        29.23 
TCGA-08-0351 TCGA-08-0352 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 
       65.33         1.28        17.95        24.56        31.10        37.58 
TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 
       22.29         3.39        12.23        14.93        18.02        15.35 
TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 
       13.97         0.72        12.56        42.15        11.08        19.59 
TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 
       58.68        19.33        10.75         4.80         7.27        15.98 
TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 TCGA-12-0618 TCGA-12-0620 TCGA-12-0654 
       18.41         7.56        15.35        12.99        10.45         7.59 
TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 
       94.78         0.10        38.17        25.97        26.66        12.13 
TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0773 TCGA-12-0775 
        3.65        20.38        28.41        15.06        43.23         7.63 
TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0820 TCGA-12-0821 
        9.73        14.93        14.86        91.76        18.48        10.62 
TCGA-12-0826 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 
       27.78         8.94        20.58       127.59         5.82         7.59 
TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 
       33.21        21.73        15.98        12.23        15.85         9.11 
TCGA-12-1097 TCGA-12-1098 TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 TCGA-12-3644 
       14.53         3.98        15.65        25.68        14.73        59.77 
TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-5295 
       26.93        15.22        10.95        12.69        34.92        14.93 
TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 
        3.22         2.04        15.12         0.95        23.05         2.24 
TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 TCGA-14-0862 TCGA-14-0866 
       11.24        13.78         3.25         1.35         2.89        26.33 
TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 
       15.95        19.30         0.79         1.38         1.12         3.75 
TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1455 TCGA-14-1456 
       32.05        58.78        23.11         7.10         0.92        40.96 
TCGA-14-1458 TCGA-14-1795 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 
        6.67         1.97         7.63         5.88         7.17        17.49 
TCGA-14-2555 TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 TCGA-16-0849 
        7.96         3.42        13.78        50.53        19.10        26.07 
TCGA-16-0861 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 
        4.31         4.57        10.29        14.01         9.14        21.24 
TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 
       13.97         6.41        11.77        21.90         8.61         0.66 
TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 TCGA-19-1388 TCGA-19-1389 
       14.27         3.39        10.75         9.07        12.95         4.64 
TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 
        7.17        12.66         3.25         0.13         9.67         4.87 
TCGA-19-2621 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 
        1.08         0.16         4.08        24.23         7.00         7.04 
TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 
        6.64        17.19         8.02        18.90         4.73        12.10 
TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 TCGA-19-A60I TCGA-19-A6J5 TCGA-26-1438 
        1.78        22.49        14.07        17.79        28.54        10.03 
TCGA-26-1440 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5134 TCGA-26-5135 
        9.73         7.13         9.37         9.40         5.49         8.88 
TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-26-A7UX TCGA-27-1831 
       18.97         1.58         7.92         2.33        19.33        16.60 
TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 
        9.86        24.23        40.54        21.30        30.05        14.04 
TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 
       11.51        24.76        10.39        10.39        16.08         7.59 
TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 
        2.86        14.40        15.78         0.20         2.53         9.21 
TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1757 
        8.35         7.63         8.48         1.22         1.55         0.13 
TCGA-28-2506 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 
        6.74         7.30         5.26        14.93        11.28        17.88 
TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5218 
       14.53        11.77        31.27        23.44        11.01         5.16 
TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 TCGA-32-1977 
       22.68        12.76         5.42        15.39        21.07         0.10 
TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 
       15.85        19.50         1.18         4.67        12.69        14.86 
TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2616 TCGA-32-2634 
       16.93        12.23        20.78        15.02         7.36        22.78 
TCGA-32-2638 TCGA-32-4208 TCGA-32-4211 TCGA-32-4213 TCGA-32-5222 TCGA-41-2571 
       25.18        21.14        12.59        19.86        19.23         0.85 
TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-4097 
       13.35         8.94         9.53         0.99         4.44         0.20 
TCGA-41-5651 TCGA-41-6646 TCGA-4W-AA9S TCGA-4W-AA9T TCGA-74-6573 TCGA-74-6575 
       15.12        12.46         4.14        14.76         3.45        20.91 
TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 
        4.34        14.33         8.22         4.80         4.54         3.09 
TCGA-76-4929 TCGA-76-4931 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 
        3.65         9.17        10.78        16.70         3.29         2.70 
TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 
       11.38        17.06         8.35         4.83         5.03         0.23 
TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        9.27         7.73         7.79         1.61        17.72        26.30 
TCGA-OX-A56R TCGA-RR-A6KA TCGA-RR-A6KC TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 
        5.92         6.28        20.55         4.70         7.69        43.89 
TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 
       18.15        10.62        64.64        40.18         0.10        21.01 
TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6666 
        9.96         6.38        17.69        23.84        17.95         8.48 
TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 
        7.56         8.02         7.40         6.61       122.73        81.96 
TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 
       75.25        47.93        72.92        50.17        44.52        36.56 
TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD 
       78.28        46.42        18.84        30.21        46.72        39.78 
TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O 
       37.45        33.57        72.95        31.63        24.20        25.48 
TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V 
       30.12         5.98        31.40        27.45        27.81        29.23 
TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O 
       14.40        18.51        12.10        11.24        17.88        30.74 
TCGA-DB-A75P TCGA-DH-5141 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B 
       16.18        31.82        14.40         8.02        30.21        42.05 
TCGA-DH-A66F TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 
       17.19        54.25        13.12        18.61        18.02        14.56 
TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 
       17.46         6.74        13.38         8.45         6.81       182.33 
TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 
       18.94        17.49        15.16       211.17        52.11        22.42 
TCGA-DU-6395 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 
       49.02        46.06        65.75         1.22        87.45         7.04 
TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6410 
       11.64       133.74        19.89        16.83        94.52         7.96 
TCGA-DU-6542 TCGA-DU-7009 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7018 
        7.73       138.28       105.21         6.54         8.84        30.67 
TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 
       26.30        10.36         7.96        94.32        18.94        44.02 
TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 
       62.01        25.91        60.30        23.31        41.98         2.76 
TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8166 TCGA-DU-8167 
       23.74        14.60        20.68        21.40        16.96        15.48 
TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TT TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 
       14.17        14.24         4.96         5.65        12.20         8.65 
TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L 
        2.70        77.98         7.23         5.98        11.41        26.76 
TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB 
        7.13        21.30        17.98       124.50        77.88        42.31 
TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5303 TCGA-E1-5305 
       23.51         7.50        44.42         0.56        67.46        79.99 
TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YO 
       57.93       134.27        78.21        95.57       130.78        75.02 
TCGA-E1-A7YW TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 
       36.82        32.35        14.33         0.23         0.20        47.77 
TCGA-FG-5964 TCGA-FG-6688 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 
       34.36        18.77        24.99        23.97        18.44        15.35 
TCGA-FG-7636 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 
       17.88        22.55        20.61        20.09        12.95        13.68 
TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 
       14.24        16.01        20.09        14.96        22.52        32.61 
TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K 
       38.27        10.72        18.71        23.70        14.76        17.82 
TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 
       15.02        16.44        22.26        28.54        10.78        36.66 
TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 
       48.69        20.45        13.58         5.72        27.52         0.10 
TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 
        6.67        11.54         0.13         0.03        16.54         3.75 
TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 
       17.42         6.54        40.34        75.19        95.93       106.95 
TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 
      172.77         4.01        29.85        23.18       122.47         4.57 
TCGA-HT-7606 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 
       17.29        22.06        45.99        56.09        57.60         0.23 
TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 
       14.27         0.16        16.24         0.76        44.68         6.05 
TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 
        0.10        31.69        14.96         0.10         0.10         2.96 
TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 
        6.90        14.53        39.48        19.23        39.09         0.23 
TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 
       50.63         0.49        37.15         0.33         0.13         3.68 
TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-8010 TCGA-HT-8011 
        5.33        35.47         3.72        11.28         1.64        16.24 
TCGA-HT-8012 TCGA-HT-8015 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 
        9.40         0.10        33.01        12.23         6.25         0.10 
TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8113 TCGA-HT-8114 
        0.46         2.50         5.56        13.78        29.59        34.19 
TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB 
        0.23        26.04         0.13         0.07        27.35         0.10 
TCGA-HT-A5RC TCGA-HT-A615 TCGA-HT-A617 TCGA-HT-A619 TCGA-HT-A61C TCGA-HT-A74H 
        5.33        16.93        16.14        21.40        17.65         2.43 
TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 
       10.52        15.35        11.05         0.10        29.92        19.89 
TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7493 TCGA-HW-7495 TCGA-HW-8320 
        8.32        19.23        40.18        35.90         4.31        21.60 
TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM 
       19.59        17.82        20.35        12.76        20.81        20.71 
TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX 
       42.77        14.40        14.40         0.23         6.71         1.64 
TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 
        2.37         2.30         4.11         5.88         7.63         0.76 
TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 
        0.16        10.42        13.25         0.20         9.01        13.61 
TCGA-QH-A65R TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU 
       15.16        12.62        15.85        14.04        19.33        14.83 
TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 
       14.53        13.61        12.23         2.20         9.17        10.29 
TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC 
       14.53        16.34        16.73         1.91        16.50         5.03 
TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M 
       11.08        12.99        88.83        94.03        32.65        59.38 
TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 
       30.87         5.46        28.08         2.07        19.59        30.67 
TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY 
       62.17        87.12        18.77        37.84        34.49        31.33 
TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 
       28.70        22.95        17.62        23.64        32.61        16.08 
TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE 
       98.24        95.93         5.85       106.39        69.50        72.59 
TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WN TCGA-S9-A6WO 
       80.12        32.45        84.99        31.10        15.91        18.61 
TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY 
       15.16        14.07        36.13         7.92        22.32        23.51 
TCGA-S9-A7IZ TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX 
        7.13         8.19         2.04        17.03        15.06        13.12 
TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 
       28.37        13.02       169.84        10.39        99.06        30.05 
TCGA-S9-A7R8 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C 
       31.59        49.32        34.78        48.39        24.92        16.18 
TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O 
       59.05        40.64        30.44        40.83        24.79        33.24 
TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RW TCGA-VM-A8C8 
       25.38        18.61        14.93        23.80        26.99        43.04 
TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CH 
       30.08        13.51         0.10         7.89        35.93        23.47 
TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K 
       37.05        16.01        23.21         8.05        51.06        13.32 
TCGA-WY-A858 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       43.96        43.40        45.80        46.88        37.71        20.81 

  DEL PEAK 27(11P15.1) MUTATED DEL PEAK 27(11P15.1) WILD-TYPE 
                          0.23                           0.03 
  DEL PEAK 27(11P15.1) MUTATED DEL PEAK 27(11P15.1) WILD-TYPE 
                        156.23                         211.17 
  DEL PEAK 27(11P15.1) MUTATED DEL PEAK 27(11P15.1) WILD-TYPE 
                        15.120                         14.545 
[1] "0.2 - 156.2 (15.1)" "0.0 - 211.2 (14.5)"
[1] "hr=" "1.1"
D59V2, continuous
D59V3, binary
                                cls
clus                               0   1
  DEL PEAK 27(11P15.1) MUTATED   104  66
  DEL PEAK 27(11P15.1) WILD-TYPE 466 406
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 27(11P15.1) MUTATED    104   66
  DEL PEAK 27(11P15.1) WILD-TYPE  466  406
                        clus
vv                       DEL PEAK 27(11P15.1) MUTATED
  BRAIN                                           104
  CENTRAL NERVOUS SYSTEM                           66
                        clus
vv                       DEL PEAK 27(11P15.1) WILD-TYPE
  BRAIN                                             466
  CENTRAL NERVOUS SYSTEM                            406
[1] 2 2
[1] FALSE
D59V4, binary
                                cls
clus                               0   1
  DEL PEAK 27(11P15.1) MUTATED    83  87
  DEL PEAK 27(11P15.1) WILD-TYPE 347 525
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 27(11P15.1) MUTATED     83   87
  DEL PEAK 27(11P15.1) WILD-TYPE  347  525
        clus
vv       DEL PEAK 27(11P15.1) MUTATED DEL PEAK 27(11P15.1) WILD-TYPE
  FEMALE                           83                            347
  MALE                             87                            525
[1] 2 2
[1] FALSE
D59V5, continuous
                                vv
clus                             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  DEL PEAK 27(11P15.1) MUTATED            38                             5
  DEL PEAK 27(11P15.1) WILD-TYPE         138                            22
                                vv
clus                             OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  DEL PEAK 27(11P15.1) MUTATED                 14                14
  DEL PEAK 27(11P15.1) WILD-TYPE              104               164
                                vv
clus                             TREATED PRIMARY GBM
  DEL PEAK 27(11P15.1) MUTATED                     5
  DEL PEAK 27(11P15.1) WILD-TYPE                  13
                                vv
clus                             UNTREATED PRIMARY (DE NOVO) GBM
  DEL PEAK 27(11P15.1) MUTATED                                94
  DEL PEAK 27(11P15.1) WILD-TYPE                             431
D59V6, multiclass
                                 clus
vv                                DEL PEAK 27(11P15.1) MUTATED
  ASTROCYTOMA                                               38
  GLIOBLASTOMA MULTIFORME (GBM)                              5
  OLIGOASTROCYTOMA                                          14
  OLIGODENDROGLIOMA                                         14
  TREATED PRIMARY GBM                                        5
  UNTREATED PRIMARY (DE NOVO) GBM                           94
                                 clus
vv                                DEL PEAK 27(11P15.1) WILD-TYPE
  ASTROCYTOMA                                                138
  GLIOBLASTOMA MULTIFORME (GBM)                               22
  OLIGOASTROCYTOMA                                           104
  OLIGODENDROGLIOMA                                          164
  TREATED PRIMARY GBM                                         13
  UNTREATED PRIMARY (DE NOVO) GBM                            431
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D59V7, binary
                                cls
clus                               0   1
  DEL PEAK 27(11P15.1) MUTATED    83  87
  DEL PEAK 27(11P15.1) WILD-TYPE 391 481
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 27(11P15.1) MUTATED     83   87
  DEL PEAK 27(11P15.1) WILD-TYPE  391  481
     clus
vv    DEL PEAK 27(11P15.1) MUTATED DEL PEAK 27(11P15.1) WILD-TYPE
  NO                            83                            391
  YES                           87                            481
[1] 2 2
[1] FALSE
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 27(11P15.1) MUTATED                                  0     1
  DEL PEAK 27(11P15.1) WILD-TYPE                                1    20
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 27(11P15.1) MUTATED                          12   153
  DEL PEAK 27(11P15.1) WILD-TYPE                        52   769
D59V8, multiclass
                                  clus
vv                                 DEL PEAK 27(11P15.1) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            0
  ASIAN                                                       1
  BLACK OR AFRICAN AMERICAN                                  12
  WHITE                                                     153
                                  clus
vv                                 DEL PEAK 27(11P15.1) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              1
  ASIAN                                                        20
  BLACK OR AFRICAN AMERICAN                                    52
  WHITE                                                       769
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D59V9, binary
                                cls
clus                               0   1
  DEL PEAK 27(11P15.1) MUTATED     4 146
  DEL PEAK 27(11P15.1) WILD-TYPE  26 745
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 27(11P15.1) MUTATED      4  146
  DEL PEAK 27(11P15.1) WILD-TYPE   26  745
                        clus
vv                       DEL PEAK 27(11P15.1) MUTATED
  HISPANIC OR LATINO                                4
  NOT HISPANIC OR LATINO                          146
                        clus
vv                       DEL PEAK 27(11P15.1) WILD-TYPE
  HISPANIC OR LATINO                                 26
  NOT HISPANIC OR LATINO                            745
[1] 2 2
[1] FALSE

Clustering(60) Variable = DEL PEAK 28(11P11.2) MUTATION ANALYSIS
D60V1, survival
                                sevent
clus2                              0   1
  DEL PEAK 28(11P11.2) MUTATED    50 104
  DEL PEAK 28(11P11.2) WILD-TYPE 430 455
  DEL PEAK 28(11P11.2) MUTATED DEL PEAK 28(11P11.2) WILD-TYPE 
                           154                            885 
  DEL PEAK 28(11P11.2) MUTATED DEL PEAK 28(11P11.2) WILD-TYPE 
                           104                            455 
$`DEL PEAK 28(11P11.2) MUTATED`
TCGA-02-0010 TCGA-02-0024 TCGA-02-0033 TCGA-02-0047 TCGA-02-0048 TCGA-02-0052 
       35.41        53.10         2.83        14.73         3.22        12.59 
TCGA-02-0055 TCGA-02-0059 TCGA-02-0069 TCGA-02-0074 TCGA-02-0075 TCGA-02-0084 
        2.50         9.57        28.70        10.19        20.84        12.62 
TCGA-02-0086 TCGA-02-0087 TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 TCGA-02-0266 
        8.81        57.76        92.65        99.98        15.65        17.72 
TCGA-02-0281 TCGA-02-0332 TCGA-02-0456 TCGA-02-2466 TCGA-06-0128 TCGA-06-0159 
        3.98        25.71         3.35        16.80        22.72         9.44 
TCGA-06-0166 TCGA-06-0174 TCGA-06-0177 TCGA-06-0184 TCGA-06-0188 TCGA-06-0192 
        5.85         3.22         4.18        69.90        44.58        38.96 
TCGA-06-0197 TCGA-06-0216 TCGA-06-0238 TCGA-06-0409 TCGA-06-0410 TCGA-06-0414 
        5.56        24.16        13.32        72.36         4.70        35.11 
TCGA-06-0649 TCGA-06-0686 TCGA-06-0876 TCGA-06-1086 TCGA-06-1800 TCGA-06-1805 
        2.10        14.20        46.19         6.84        26.79        33.90 
TCGA-06-1806 TCGA-06-2570 TCGA-06-5856 TCGA-06-6389 TCGA-06-6694 TCGA-06-A7TK 
       15.32        31.50         3.75         7.79         7.36         5.39 
TCGA-06-A7TL TCGA-08-0245 TCGA-08-0353 TCGA-08-0510 TCGA-12-0616 TCGA-12-0619 
        5.42        37.84         8.42         4.27        14.73        34.92 
TCGA-12-0670 TCGA-12-0772 TCGA-12-0819 TCGA-12-0822 TCGA-12-0827 TCGA-12-1099 
       25.97        53.85        24.79        23.51        38.76         4.14 
TCGA-12-1602 TCGA-12-3646 TCGA-12-3653 TCGA-14-0740 TCGA-14-0783 TCGA-14-0817 
        6.77        44.02        14.53        11.97         6.21         5.39 
TCGA-14-0865 TCGA-14-0867 TCGA-14-0871 TCGA-14-1454 TCGA-14-1459 TCGA-14-1794 
       16.50         2.04        28.93        30.18        12.43         0.99 
TCGA-14-1821 TCGA-14-1823 TCGA-14-3477 TCGA-15-1447 TCGA-15-1449 TCGA-16-0846 
       17.79        17.85         3.78        53.19        13.28         3.91 
TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 TCGA-19-1387 TCGA-19-1390 TCGA-19-1392 
       16.37         4.31        29.03         5.95        25.38         3.65 
TCGA-19-2623 TCGA-19-5951 TCGA-19-5959 TCGA-19-5960 TCGA-19-A6J4 TCGA-26-1439 
        7.53         8.02        16.80        14.96         3.98        13.87 
TCGA-26-5133 TCGA-27-1830 TCGA-27-2521 TCGA-28-2509 TCGA-28-5216 TCGA-32-1976 
       14.86         5.06        10.39         4.77        13.64         0.49 
TCGA-32-1986 TCGA-32-2615 TCGA-32-2632 TCGA-32-4210 TCGA-32-4719 TCGA-41-3915 
       12.69        15.95         8.84         3.72        10.85        11.84 
TCGA-74-6584 TCGA-76-4934 TCGA-76-6286 TCGA-CS-6665 TCGA-DB-5277 TCGA-DH-5140 
        7.50         2.53        20.98        12.43        50.86        19.96 
TCGA-DH-5142 TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DU-6396 TCGA-DU-6408 TCGA-DU-7006 
       30.31        13.38         3.45        75.16       114.08        11.47 
TCGA-DU-7007 TCGA-DU-7010 TCGA-DU-7014 TCGA-DU-7015 TCGA-DU-8158 TCGA-DU-8165 
       62.96        14.99       117.40        90.77         5.10        19.13 
TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A7TJ TCGA-E1-5304 TCGA-E1-A7YV TCGA-FG-5963 
       12.59        15.12         0.56        41.13        32.45        25.48 
TCGA-FG-6689 TCGA-FG-A4MW TCGA-HT-7470 TCGA-HT-7477 TCGA-HT-7686 TCGA-HT-7693 
       14.93        18.38        40.11        24.26        42.74        17.52 
TCGA-HT-7882 TCGA-HT-7902 TCGA-HT-8013 TCGA-HT-8018 TCGA-HT-8111 TCGA-HT-8564 
        3.72        31.43        63.55        37.87         0.23        15.72 
TCGA-HT-A5R7 TCGA-HT-A614 TCGA-HT-A616 TCGA-HT-A61B TCGA-HW-8319 TCGA-IK-7675 
       20.22         2.70         1.81        17.52        21.70        19.00 
TCGA-P5-A5F6 TCGA-QH-A65S TCGA-RY-A83Z TCGA-S9-A6WM TCGA-S9-A89V TCGA-S9-A89Z 
        1.28         2.53         9.90        19.86        18.71        11.97 
TCGA-TM-A7C3 TCGA-TM-A84I TCGA-TM-A84J TCGA-WY-A859 
       49.45        28.08        24.16        39.88 

$`DEL PEAK 28(11P11.2) WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0011 
       11.77         4.73        18.35        23.18        10.59        20.71 
TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0025 
       82.59        20.61        87.06        77.65        20.12        42.74 
TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 
       24.59        12.16        90.58        14.14         3.62        10.72 
TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0051 TCGA-02-0054 TCGA-02-0057 
       10.52        18.31         6.87        15.09         6.54        19.86 
TCGA-02-0058 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0070 TCGA-02-0071 
        8.35         6.02        19.73        26.43        25.05         5.49 
TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0085 TCGA-02-0089 TCGA-02-0099 
       27.25        89.72        22.72        51.32        16.96         3.48 
TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0116 
       27.02        65.00        11.67        17.65        23.18        48.95 
TCGA-02-0258 TCGA-02-0260 TCGA-02-0269 TCGA-02-0271 TCGA-02-0285 TCGA-02-0289 
       16.54        16.93        10.75        14.47        13.87        14.20 
TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 
       15.95        12.23         9.90         7.73        10.62         7.33 
TCGA-02-0330 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 
       15.91         4.37        25.12        10.59        12.39        14.50 
TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-2470 
       10.55        47.11        11.34         9.27        16.21        12.92 
TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 
       15.32        15.45        20.32         2.70         6.15        20.38 
TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 
       47.61         6.94         3.98        33.67        12.95        25.35 
TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 
       14.30        26.70        24.23        11.90         0.20        10.29 
TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 
        2.20        11.74         2.33        20.09        17.79        10.09 
TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 
        8.61        19.46        46.59        12.33        13.94        10.45 
TCGA-06-0157 TCGA-06-0158 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 
        3.19        10.82        11.80         3.42        56.91        10.65 
TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0175 TCGA-06-0176 
       19.66         3.29        13.12         4.47         4.04        91.00 
TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0185 TCGA-06-0187 TCGA-06-0189 
       88.14        20.25         3.65        73.84        27.22        15.42 
TCGA-06-0190 TCGA-06-0194 TCGA-06-0195 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 
       10.42         4.67         7.40         0.39         7.66         8.42 
TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0219 
        7.63         7.40        11.84         0.53        15.02         0.72 
TCGA-06-0221 TCGA-06-0237 TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 
       19.82        13.64        20.42        48.69        10.82         9.01 
TCGA-06-0402 TCGA-06-0412 TCGA-06-0413 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
        0.26         9.57         3.16        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0650 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 
        9.80        23.57        26.40        46.88         7.86         2.70 
TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 
        2.70         0.92        43.46         5.65         7.17        40.41 
TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1087 TCGA-06-1801 
       16.57        20.78        26.76        23.93         4.04        11.84 
TCGA-06-1802 TCGA-06-1804 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       15.32        13.61         1.08        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 
       12.56        30.64         5.95        16.64         5.98         4.37 
TCGA-06-2569 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
        0.43        11.74         3.55         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 TCGA-06-5858 TCGA-06-5859 
        8.98         8.55         6.71         2.73         6.15         4.57 
TCGA-06-6388 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6695 TCGA-06-6697 
        5.23         5.39         1.48       120.56         8.32        12.85 
TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-06-A5U0 TCGA-06-A5U1 
        4.77         1.55         4.77         4.96         4.70         1.87 
TCGA-06-A6S0 TCGA-06-A6S1 TCGA-08-0244 TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 
        3.12         2.56        22.68         4.18       115.86         1.74 
TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 
        8.42        25.71        12.16         9.80        29.23        65.33 
TCGA-08-0352 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 
        1.28        17.95        24.56        31.10        37.58        22.29 
TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 
        3.39        12.23        14.93        18.02        15.35        13.97 
TCGA-08-0392 TCGA-08-0509 TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 
        0.72        12.56        42.15        11.08        19.59        58.68 
TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 
       19.33        10.75         4.80         7.27        15.98        18.41 
TCGA-08-0531 TCGA-12-0615 TCGA-12-0618 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 
        7.56        15.35        12.99        10.45         7.59        94.78 
TCGA-12-0657 TCGA-12-0662 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 
        0.10        38.17        26.66        12.13         3.65        20.38 
TCGA-12-0707 TCGA-12-0769 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 
       28.41        15.06        43.23         7.63         9.73        14.93 
TCGA-12-0780 TCGA-12-0818 TCGA-12-0820 TCGA-12-0821 TCGA-12-0826 TCGA-12-0828 
       14.86        91.76        18.48        10.62        27.78         8.94 
TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 
       20.58       127.59         5.82         7.59        33.21        21.73 
TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 
       15.98        12.23        15.85         9.11        14.53         3.98 
TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 TCGA-12-3644 TCGA-12-3648 TCGA-12-3649 
       15.65        25.68        14.73        59.77        26.93        15.22 
TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 
       10.95        12.69        34.92        14.93         3.22         2.04 
TCGA-14-0736 TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 
       15.12         0.95        23.05         2.24        11.24        13.78 
TCGA-14-0812 TCGA-14-0813 TCGA-14-0862 TCGA-14-0866 TCGA-14-1034 TCGA-14-1037 
        3.25         1.35         2.89        26.33        15.95        19.30 
TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 
        0.79         1.38         1.12         3.75        32.05        58.78 
TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 
       23.11         7.10         1.15         0.92        40.96         6.67 
TCGA-14-1795 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 
        1.97         7.63         5.88         7.17        17.49         7.96 
TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 TCGA-16-0848 TCGA-16-0849 
        3.42        13.78        50.53        19.10        17.59        26.07 
TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 
        4.57        10.29        14.01         9.14        21.24        13.97 
TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 
        6.41        11.77        21.90         8.61         0.66        14.27 
TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 TCGA-19-1388 TCGA-19-1389 TCGA-19-1786 
        3.39        10.75         9.07        12.95         4.64         7.17 
TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 
       12.66         3.25         0.13         9.67         4.87         1.08 
TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 
        0.16         4.08        24.23         7.00         7.04         6.64 
TCGA-19-5950 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 
       17.19        18.90         4.73        12.10         1.78        22.49 
TCGA-19-5958 TCGA-19-A60I TCGA-19-A6J5 TCGA-26-1438 TCGA-26-1440 TCGA-26-1442 
       14.07        17.79        28.54        10.03         9.73        31.33 
TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 
        7.13         9.37         9.40         5.49         8.88        18.97 
TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-26-A7UX TCGA-27-1831 TCGA-27-1832 
        1.58         7.92         2.33        19.33        16.60         9.86 
TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 
       24.23        40.54        21.30        30.05        14.04        11.51 
TCGA-27-2518 TCGA-27-2519 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 
       24.76        10.39        16.08         7.59         2.86        14.40 
TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 
       15.78         0.20         2.53         9.21         8.35         7.63 
TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 
        8.48         1.22         1.55         2.83         0.13         0.66 
TCGA-28-2506 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 
        6.74         7.30         5.26        14.93        11.28        17.88 
TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5218 
       14.53        11.77        31.27        23.44        11.01         5.16 
TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 TCGA-32-1977 
       22.68        12.76         5.42        15.39        21.07         0.10 
TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1987 TCGA-32-1991 
       15.85        19.50         1.18         4.67        14.86        16.93 
TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2616 TCGA-32-2634 TCGA-32-2638 
       12.23        20.78        15.02         7.36        22.78        25.18 
TCGA-32-4208 TCGA-32-4211 TCGA-32-4213 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 
       21.14        12.59        19.86        19.23         0.85        13.35 
TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-4097 TCGA-41-5651 
        8.94         9.53         0.99         4.44         0.20        15.12 
TCGA-41-6646 TCGA-4W-AA9S TCGA-4W-AA9T TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 
       12.46         4.14        14.76         3.45        20.91         4.34 
TCGA-74-6578 TCGA-74-6581 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 
       14.33         8.22         4.80         4.54         3.09         3.65 
TCGA-76-4931 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 
        9.17        10.78        16.70         3.29         2.70        11.38 
TCGA-76-6282 TCGA-76-6285 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 
       17.06         8.35         4.83         5.03         0.23         9.27 
TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 TCGA-OX-A56R 
        7.73         7.79         1.61        17.72        26.30         5.92 
TCGA-RR-A6KA TCGA-RR-A6KC TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 
        6.28        20.55         4.70         7.69        43.89        18.15 
TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 
       10.62        64.64        40.18         0.10        21.01         9.96 
TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6666 TCGA-CS-6667 
        6.38        17.69        23.84        17.95         8.48         7.56 
TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 
        8.02         7.40         6.61       122.73        81.96        75.25 
TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 
       47.93        72.92        50.17        44.52        36.56        78.28 
TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE 
       46.42        18.84        30.21        46.72        39.78        37.45 
TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P 
       33.57        72.95        31.63        24.20        25.48        30.12 
TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W 
        5.98        31.40        27.45        27.81        29.23        14.40 
TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P 
       18.51        12.10        11.24        17.88        30.74        16.18 
TCGA-DH-5141 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D 
       31.82        14.40         8.02        30.21        42.05        27.81 
TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UV TCGA-DU-5847 
       17.19        17.19        54.25        13.12        18.61        18.02 
TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 
       14.56        17.46         6.74        13.38         8.45         6.81 
TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 
      182.33        18.94        17.49        15.16       211.17        52.11 
TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 
       22.42        49.02        46.06        65.75         1.22        87.45 
TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 
        7.04        11.64       133.74        19.89        16.83        94.52 
TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7011 TCGA-DU-7012 
        7.96         7.73       156.23       138.28       105.21         6.54 
TCGA-DU-7013 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 
        8.84        30.67        26.30        10.36         7.96        94.32 
TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 
       18.94        44.02        62.01        25.91        60.30        23.31 
TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 
       41.98         2.76        23.74        14.60        20.68        21.40 
TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TT TCGA-DU-A5TU 
       16.96        15.48        14.17        14.24         4.96         3.65 
TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 
        5.65        12.20         8.65         2.70        77.98         7.23 
TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 
        5.98        11.41        26.76         7.13        21.30        17.98 
TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG 
      124.50        77.88        42.31        23.51         7.50        44.42 
TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 
       50.14        67.46        79.99        57.93       134.27        78.21 
TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YO TCGA-E1-A7YW TCGA-E1-A7Z6 TCGA-EZ-7264 
       95.57       130.78        75.02        36.82        32.35        14.33 
TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 
        0.23         0.20        47.77        34.36        36.82        18.77 
TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7638 
       24.99        23.97        18.44        15.35        17.88        22.55 
TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 
       20.61        20.09        12.95        13.68        14.24        16.01 
TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU 
       20.09        14.96        22.52        32.61        38.27        10.72 
TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ 
       18.71        23.70        14.76        17.82        16.41        15.02 
TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 
       16.44        22.26        28.54        10.78        36.66        48.69 
TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 
       20.45        13.58         5.72        27.52         0.10         6.67 
TCGA-HT-7469 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 
       11.54         0.13         0.03        16.54         3.75        17.42 
TCGA-HT-7476 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 
        6.54         6.38        40.34        75.19        95.93       106.95 
TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 
      172.77         4.01         5.03        29.85        23.18       122.47 
TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 
        4.57        17.29         3.16        22.06        45.99        56.09 
TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 
       57.60         0.23        14.27         0.16        16.24         0.76 
TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 
       44.68         6.05         0.10        31.69        14.96         0.10 
TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 
        0.10         2.96         6.90        14.53        39.48        19.23 
TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 
       39.09         0.23        50.63         0.49        23.61        37.15 
TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7884 
        0.33         0.13         3.68         5.33        35.47        11.28 
TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8015 TCGA-HT-8019 TCGA-HT-8104 
        1.64        16.24         9.40         0.10        33.01        12.23 
TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 
        6.25         0.10         0.46         2.50         5.56        13.78 
TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8563 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 
       29.59        34.19        28.27         0.23        26.04         0.13 
TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A615 TCGA-HT-A617 
        0.07        27.35         0.10         5.33        16.93        16.14 
TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K 
       16.83        21.40        17.65         2.43        10.52        15.35 
TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 
       11.05         0.10        29.92        19.89         8.32        19.23 
TCGA-HW-7491 TCGA-HW-7493 TCGA-HW-7495 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 
       40.18        35.90         4.31        21.60        19.59        17.82 
TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-8125 TCGA-KT-A74X 
       20.35        12.76        20.81        20.71        42.77        14.40 
TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ 
       14.40         0.23         6.71         1.64         2.37         2.30 
TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A72U TCGA-P5-A72W 
        4.11         5.88         7.63         0.76         0.16        10.42 
TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-QH-A65R 
       13.25        11.64         0.20         9.01        13.61        15.16 
TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV 
       12.62        15.85        14.04        19.33        14.83        14.53 
TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 
       13.61        12.23         2.20         9.17        10.29        14.53 
TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X 
       16.34        16.73         1.91        16.50         5.03        11.08 
TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X 
       12.99        88.83        94.03        32.65        59.38        30.87 
TCGA-RY-A83Y TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS 
        5.46        28.08         2.07        19.59        30.67        62.17 
TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ 
       87.12        18.77        37.84        34.49        31.33        28.70 
TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 
       22.95        17.62        23.64        32.61        16.08        98.24 
TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG 
       95.93         5.85       106.39        69.50        72.59        80.12 
TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP 
       32.45        84.99        31.10        15.91        18.61        15.16 
TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ 
       14.07        36.13         7.92        22.32        23.51         7.13 
TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX 
       20.02         8.19         2.04        17.03        15.06        13.12 
TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 
       28.37        13.02       169.84        10.39        99.06        30.05 
TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF 
       98.63        31.59        48.33        49.32        34.78        48.39 
TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84L 
       24.92        16.18        59.05        40.64        30.44        40.83 
TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T 
       24.79        33.24        25.38        18.61        14.93        23.80 
TCGA-TQ-A7RH TCGA-TQ-A7RW TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB 
       15.98        26.99        43.04        30.08        13.51         0.10 
TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS 
        7.89        35.93        23.47        37.05        16.01        23.21 
TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A85A TCGA-WY-A85B 
        8.05        51.06        13.32        43.96        43.40        45.80 
TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       46.88        37.71        20.81 

  DEL PEAK 28(11P11.2) MUTATED DEL PEAK 28(11P11.2) WILD-TYPE 
                          0.23                           0.03 
  DEL PEAK 28(11P11.2) MUTATED DEL PEAK 28(11P11.2) WILD-TYPE 
                        117.40                         211.17 
  DEL PEAK 28(11P11.2) MUTATED DEL PEAK 28(11P11.2) WILD-TYPE 
                        14.945                         14.730 
[1] "0.2 - 117.4 (14.9)" "0.0 - 211.2 (14.7)"
[1] "hr=" "1.3"
D60V2, continuous
D60V3, binary
                                cls
clus                               0   1
  DEL PEAK 28(11P11.2) MUTATED   105  49
  DEL PEAK 28(11P11.2) WILD-TYPE 465 423
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 28(11P11.2) MUTATED    105   49
  DEL PEAK 28(11P11.2) WILD-TYPE  465  423
                        clus
vv                       DEL PEAK 28(11P11.2) MUTATED
  BRAIN                                           105
  CENTRAL NERVOUS SYSTEM                           49
                        clus
vv                       DEL PEAK 28(11P11.2) WILD-TYPE
  BRAIN                                             465
  CENTRAL NERVOUS SYSTEM                            423
[1] 2 2
[1] FALSE
D60V4, binary
                                cls
clus                               0   1
  DEL PEAK 28(11P11.2) MUTATED    70  84
  DEL PEAK 28(11P11.2) WILD-TYPE 360 528
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 28(11P11.2) MUTATED     70   84
  DEL PEAK 28(11P11.2) WILD-TYPE  360  528
        clus
vv       DEL PEAK 28(11P11.2) MUTATED DEL PEAK 28(11P11.2) WILD-TYPE
  FEMALE                           70                            360
  MALE                             84                            528
[1] 2 2
[1] FALSE
D60V5, continuous
                                vv
clus                             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  DEL PEAK 28(11P11.2) MUTATED            27                             5
  DEL PEAK 28(11P11.2) WILD-TYPE         149                            22
                                vv
clus                             OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  DEL PEAK 28(11P11.2) MUTATED                 11                11
  DEL PEAK 28(11P11.2) WILD-TYPE              107               167
                                vv
clus                             TREATED PRIMARY GBM
  DEL PEAK 28(11P11.2) MUTATED                     6
  DEL PEAK 28(11P11.2) WILD-TYPE                  12
                                vv
clus                             UNTREATED PRIMARY (DE NOVO) GBM
  DEL PEAK 28(11P11.2) MUTATED                                94
  DEL PEAK 28(11P11.2) WILD-TYPE                             431
D60V6, multiclass
                                 clus
vv                                DEL PEAK 28(11P11.2) MUTATED
  ASTROCYTOMA                                               27
  GLIOBLASTOMA MULTIFORME (GBM)                              5
  OLIGOASTROCYTOMA                                          11
  OLIGODENDROGLIOMA                                         11
  TREATED PRIMARY GBM                                        6
  UNTREATED PRIMARY (DE NOVO) GBM                           94
                                 clus
vv                                DEL PEAK 28(11P11.2) WILD-TYPE
  ASTROCYTOMA                                                149
  GLIOBLASTOMA MULTIFORME (GBM)                               22
  OLIGOASTROCYTOMA                                           107
  OLIGODENDROGLIOMA                                          167
  TREATED PRIMARY GBM                                         12
  UNTREATED PRIMARY (DE NOVO) GBM                            431
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D60V7, binary
                                cls
clus                               0   1
  DEL PEAK 28(11P11.2) MUTATED    81  73
  DEL PEAK 28(11P11.2) WILD-TYPE 393 495
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 28(11P11.2) MUTATED     81   73
  DEL PEAK 28(11P11.2) WILD-TYPE  393  495
     clus
vv    DEL PEAK 28(11P11.2) MUTATED DEL PEAK 28(11P11.2) WILD-TYPE
  NO                            81                            393
  YES                           73                            495
[1] 2 2
[1] FALSE
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 28(11P11.2) MUTATED                                  0     2
  DEL PEAK 28(11P11.2) WILD-TYPE                                1    19
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 28(11P11.2) MUTATED                          13   135
  DEL PEAK 28(11P11.2) WILD-TYPE                        51   787
D60V8, multiclass
                                  clus
vv                                 DEL PEAK 28(11P11.2) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            0
  ASIAN                                                       2
  BLACK OR AFRICAN AMERICAN                                  13
  WHITE                                                     135
                                  clus
vv                                 DEL PEAK 28(11P11.2) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              1
  ASIAN                                                        19
  BLACK OR AFRICAN AMERICAN                                    51
  WHITE                                                       787
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D60V9, binary
                                cls
clus                               0   1
  DEL PEAK 28(11P11.2) MUTATED     5 129
  DEL PEAK 28(11P11.2) WILD-TYPE  25 762
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 28(11P11.2) MUTATED      5  129
  DEL PEAK 28(11P11.2) WILD-TYPE   25  762
                        clus
vv                       DEL PEAK 28(11P11.2) MUTATED
  HISPANIC OR LATINO                                5
  NOT HISPANIC OR LATINO                          129
                        clus
vv                       DEL PEAK 28(11P11.2) WILD-TYPE
  HISPANIC OR LATINO                                 25
  NOT HISPANIC OR LATINO                            762
[1] 2 2
[1] FALSE

Clustering(61) Variable = DEL PEAK 29(12P13.1) MUTATION ANALYSIS
D61V1, survival
                                sevent
clus2                              0   1
  DEL PEAK 29(12P13.1) MUTATED    40  65
  DEL PEAK 29(12P13.1) WILD-TYPE 440 494
  DEL PEAK 29(12P13.1) MUTATED DEL PEAK 29(12P13.1) WILD-TYPE 
                           105                            934 
  DEL PEAK 29(12P13.1) MUTATED DEL PEAK 29(12P13.1) WILD-TYPE 
                            65                            494 
$`DEL PEAK 29(12P13.1) MUTATED`
TCGA-02-0014 TCGA-02-0026 TCGA-02-0034 TCGA-02-0038 TCGA-02-0055 TCGA-02-0071 
       82.59        24.59        14.14        10.72         2.50         5.49 
TCGA-02-0075 TCGA-02-0085 TCGA-02-0087 TCGA-02-0104 TCGA-02-0113 TCGA-06-0129 
       20.84        51.32        57.76        65.00        92.65        33.67 
TCGA-06-0147 TCGA-06-0149 TCGA-06-0159 TCGA-06-0175 TCGA-06-0190 TCGA-06-0195 
       17.79         8.61         9.44         4.04        10.42         7.40 
TCGA-06-0197 TCGA-06-0221 TCGA-06-0237 TCGA-06-0414 TCGA-06-0646 TCGA-06-1801 
        5.56        19.82        13.64        35.11         5.75        11.84 
TCGA-06-2570 TCGA-06-5415 TCGA-06-5859 TCGA-06-6390 TCGA-06-6694 TCGA-06-6697 
       31.50         8.55         4.57         5.39         7.36        12.85 
TCGA-06-6700 TCGA-08-0245 TCGA-08-0348 TCGA-08-0349 TCGA-08-0359 TCGA-08-0386 
        4.77        37.84        12.16         9.80         3.39        18.02 
TCGA-08-0510 TCGA-08-0514 TCGA-08-0518 TCGA-12-0619 TCGA-12-1598 TCGA-12-1600 
        4.27        11.08        19.33        34.92        15.65        14.73 
TCGA-12-3646 TCGA-14-0783 TCGA-14-0817 TCGA-14-0867 TCGA-14-0871 TCGA-14-1451 
       44.02         6.21         5.39         2.04        28.93        23.11 
TCGA-14-1794 TCGA-14-3477 TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 TCGA-16-1055 
        0.99         3.78        26.07        16.37         4.31        10.29 
TCGA-19-0960 TCGA-19-1385 TCGA-19-1388 TCGA-19-1390 TCGA-19-2623 TCGA-19-4065 
        8.61        10.75        12.95        25.38         7.53         7.04 
TCGA-26-5132 TCGA-26-5136 TCGA-27-1836 TCGA-28-2514 TCGA-28-5204 TCGA-32-1978 
        9.40        18.97        30.05         5.26        14.93        15.85 
TCGA-32-2494 TCGA-32-4208 TCGA-76-4935 TCGA-76-6193 TCGA-76-6664 TCGA-CS-4943 
       20.78        21.14        10.78         2.70         7.79        18.15 
TCGA-CS-6665 TCGA-DB-5279 TCGA-DB-A4XH TCGA-DU-5855 TCGA-DU-6403 TCGA-DU-6542 
       12.43        44.52        31.63         6.81        11.64         7.73 
TCGA-DU-7007 TCGA-DU-7299 TCGA-DU-7304 TCGA-DU-A6S6 TCGA-DU-A76R TCGA-E1-5302 
       62.96        44.02        23.31        77.98        21.30        50.14 
TCGA-E1-A7YV TCGA-FG-5965 TCGA-FG-6690 TCGA-FG-A6J3 TCGA-FG-A711 TCGA-HT-7470 
       32.45        36.82        24.99        22.26        48.69        40.11 
TCGA-HT-7879 TCGA-HT-8106 TCGA-HT-8108 TCGA-HT-A5R7 TCGA-HW-A5KM TCGA-P5-A5EW 
        3.68         0.10         2.50        20.22        20.71         6.71 
TCGA-P5-A72X TCGA-S9-A6U1 TCGA-S9-A6UA TCGA-S9-A7J0 TCGA-S9-A7QX TCGA-S9-A7R2 
       13.25        17.62         5.85        20.02        13.12        10.39 
TCGA-S9-A7R4 TCGA-S9-A89V TCGA-TM-A84I 
       30.05        18.71        28.08 

$`DEL PEAK 29(12P13.1) WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
       11.77         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 
       20.71        20.61        87.06        77.65        20.12        53.10 
TCGA-02-0025 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0037 TCGA-02-0039 
       42.74        12.16        90.58         2.83         3.62        10.52 
TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 
       18.31         6.87        14.73         3.22        15.09        12.59 
TCGA-02-0054 TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 
        6.54        19.86         8.35         9.57         6.02        19.73 
TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 TCGA-02-0074 TCGA-02-0079 TCGA-02-0080 
       26.43        28.70        25.05        10.19        27.25        89.72 
TCGA-02-0083 TCGA-02-0084 TCGA-02-0086 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 
       22.72        12.62         8.81        16.96         3.48        27.02 
TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 
       11.67        17.65        23.18        99.98        15.65        48.95 
TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 
       16.54        16.93        17.72        10.75        14.47         3.98 
TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 
       13.87        14.20        15.95        12.23         9.90         7.73 
TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 
       10.62         7.33        15.91        25.71         4.37        25.12 
TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 
       10.59        12.39        14.50        10.55        47.11        11.34 
TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 
        9.27        16.21         3.35        16.80        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 
       15.45        20.32         2.70         6.15        20.38        47.61 
TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 
        6.94         3.98        22.72        12.95        25.35        14.30 
TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 
       26.70        24.23        11.90         0.20        10.29         2.20 
TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0148 TCGA-06-0150 TCGA-06-0151 
       11.74         2.33        20.09        10.09        19.46        46.59 
TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0160 
       12.33        13.94        10.45         3.19        10.82        11.80 
TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 
        3.42        56.91        10.65         5.85        19.66         3.29 
TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 
       13.12         4.47         3.22        91.00         4.18        88.14 
TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 
       20.25         3.65        69.90        73.84        27.22        44.58 
TCGA-06-0189 TCGA-06-0192 TCGA-06-0194 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 
       15.42        38.96         4.67         0.39         7.66         8.42 
TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 
        7.63         7.40        11.84         0.53        15.02        24.16 
TCGA-06-0219 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 
        0.72        13.32        20.42        48.69        10.82         9.01 
TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 TCGA-06-0644 
        0.26        72.36         4.70         9.57         3.16        12.62 
TCGA-06-0645 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 
        5.75         9.80         2.10        23.57        14.20        26.40 
TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 
       46.88         7.86         2.70         2.70         0.92        43.46 
TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 
       46.19         5.65         7.17        40.41        16.57        20.78 
TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1087 TCGA-06-1800 TCGA-06-1802 
       26.76        23.93         6.84         4.04        26.79        15.32 
TCGA-06-1804 TCGA-06-1805 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 
       13.61        33.90        15.32         1.08        12.49         4.93 
TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 
       17.65        12.56        30.64         5.95        16.64         5.98 
TCGA-06-2567 TCGA-06-2569 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 
        4.37         0.43        11.74         3.55         8.35         4.54 
TCGA-06-5413 TCGA-06-5414 TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.81         8.98         6.71         2.73         3.75         6.15 
TCGA-06-6388 TCGA-06-6389 TCGA-06-6391 TCGA-06-6693 TCGA-06-6695 TCGA-06-6698 
        5.23         7.79         1.48       120.56         8.32         4.77 
TCGA-06-6699 TCGA-06-6701 TCGA-06-A5U0 TCGA-06-A5U1 TCGA-06-A6S0 TCGA-06-A6S1 
        1.55         4.96         4.70         1.87         3.12         2.56 
TCGA-06-A7TK TCGA-06-A7TL TCGA-08-0244 TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 
        5.39         5.42        22.68         4.18       115.86         1.74 
TCGA-08-0346 TCGA-08-0347 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 
        8.42        25.71        29.23        65.33         1.28         8.42 
TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0375 
       17.95        24.56        31.10        37.58        22.29        12.23 
TCGA-08-0380 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0512 
       14.93        15.35        13.97         0.72        12.56        42.15 
TCGA-08-0516 TCGA-08-0517 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 
       19.59        58.68        10.75         4.80         7.27        15.98 
TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0620 
       18.41         7.56        15.35        14.73        12.99        10.45 
TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 
        7.59        94.78         0.10        38.17        25.97        26.66 
TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 
       12.13         3.65        20.38        28.41        15.06        53.85 
TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 
       43.23         7.63         9.73        14.93        14.86        91.76 
TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 
       24.79        18.48        10.62        23.51        27.78        38.76 
TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 
        8.94        20.58       127.59         5.82         7.59        33.21 
TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 
       21.73        15.98        12.23        15.85         9.11        14.53 
TCGA-12-1098 TCGA-12-1099 TCGA-12-1599 TCGA-12-1602 TCGA-12-3644 TCGA-12-3648 
        3.98         4.14        25.68         6.77        59.77        26.93 
TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 
       15.22        10.95        12.69        34.92        14.53        14.93 
TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 
        3.22         2.04        15.12        11.97         0.95        23.05 
TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 TCGA-14-0862 
        2.24        11.24        13.78         3.25         1.35         2.89 
TCGA-14-0865 TCGA-14-0866 TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 
       16.50        26.33        15.95        19.30         0.79         1.38 
TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1452 TCGA-14-1453 
        1.12         3.75        32.05        58.78         7.10         1.15 
TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1795 
       30.18         0.92        40.96         6.67        12.43         1.97 
TCGA-14-1821 TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 
       17.79        17.85         7.63         5.88         7.17        17.49 
TCGA-14-2555 TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 TCGA-15-1447 
        7.96         3.42        13.78        50.53        19.10        53.19 
TCGA-15-1449 TCGA-16-0846 TCGA-16-0848 TCGA-16-1045 TCGA-16-1047 TCGA-16-1056 
       13.28         3.91        17.59        29.03         4.57        14.01 
TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 
        9.14        21.24        13.97         6.41        11.77        21.90 
TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1386 TCGA-19-1387 TCGA-19-1389 
        0.66        14.27         3.39         9.07         5.95         4.64 
TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 
        3.65         7.17        12.66         3.25         0.13         9.67 
TCGA-19-2620 TCGA-19-2621 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 
        4.87         1.08         0.16         4.08        24.23         7.00 
TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 
        6.64        17.19         8.02        18.90         4.73        12.10 
TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-19-A60I 
        1.78        22.49        14.07        16.80        14.96        17.79 
TCGA-19-A6J4 TCGA-19-A6J5 TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 TCGA-26-1442 
        3.98        28.54        10.03        13.87         9.73        31.33 
TCGA-26-1443 TCGA-26-1799 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5139 
        7.13         9.37        14.86         5.49         8.88         1.58 
TCGA-26-6173 TCGA-26-6174 TCGA-26-A7UX TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 
        7.92         2.33        19.33         5.06        16.60         9.86 
TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 
       24.23        40.54        21.30        14.04        11.51        24.76 
TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 
       10.39        10.39        16.08         7.59         2.86        14.40 
TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 
       15.78         0.20         2.53         9.21         8.35         7.63 
TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 
        8.48         1.22         1.55         2.83         0.13         0.66 
TCGA-28-2506 TCGA-28-2509 TCGA-28-2513 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 
        6.74         4.77         7.30        11.28        17.88        14.53 
TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 
       11.77        31.27        23.44        11.01        13.64         5.16 
TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 
       22.68        12.76         5.42        15.39        21.07         0.49 
TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 
        0.10        19.50         1.18         4.67        12.69        14.86 
TCGA-32-1991 TCGA-32-2491 TCGA-32-2495 TCGA-32-2615 TCGA-32-2616 TCGA-32-2632 
       16.93        12.23        15.02        15.95         7.36         8.84 
TCGA-32-2634 TCGA-32-2638 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 
       22.78        25.18         3.72        12.59        19.86        10.85 
TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 
       19.23         0.85        13.35         8.94         9.53         0.99 
TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-4W-AA9S 
        4.44        11.84         0.20        15.12        12.46         4.14 
TCGA-4W-AA9T TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 
       14.76         3.45        20.91         4.34        14.33         8.22 
TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 
        7.50         4.80         4.54         3.09         3.65         9.17 
TCGA-76-4934 TCGA-76-6191 TCGA-76-6192 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 
        2.53        16.70         3.29        11.38        17.06         8.35 
TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 
       20.98         4.83         5.03         0.23         9.27         7.73 
TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 TCGA-OX-A56R TCGA-RR-A6KA TCGA-RR-A6KC 
        1.61        17.72        26.30         5.92         6.28        20.55 
TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 
        4.70         7.69        43.89        10.62        64.64        40.18 
TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 
        0.10        21.01         9.96         6.38        17.69        23.84 
TCGA-CS-6290 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 
       17.95         8.48         7.56         8.02         7.40         6.61 
TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 
      122.73        81.96        75.25        47.93        72.92        50.86 
TCGA-DB-5278 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB 
       50.17        36.56        78.28        46.42        18.84        30.21 
TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A64L 
       46.72        39.78        37.45        33.57        72.95        24.20 
TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U 
       25.48        30.12         5.98        31.40        27.45        27.81 
TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M 
       29.23        14.40        18.51        12.10        11.24        17.88 
TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 
       30.74        16.18        19.96        31.82        30.31        14.40 
TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G 
        8.02        30.21        42.05        27.81        17.19        17.19 
TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 
       54.25        13.12        13.38         3.45        18.61        18.02 
TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5870 
       14.56        17.46         6.74        13.38         8.45       182.33 
TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 
       18.94        17.49        15.16       211.17        52.11        22.42 
TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 
       49.02        75.16        46.06        65.75         1.22        87.45 
TCGA-DU-6402 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 
        7.04       133.74        19.89        16.83        94.52       114.08 
TCGA-DU-6410 TCGA-DU-7006 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 
        7.96        11.47       156.23       138.28        14.99       105.21 
TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7014 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 
        6.54         8.84       117.40        90.77        30.67        26.30 
TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7300 TCGA-DU-7301 
       10.36         7.96        94.32        18.94        62.01        25.91 
TCGA-DU-7302 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 
       60.30        41.98         2.76         5.10        23.74        14.60 
TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 
       20.68        21.40        19.13        16.96        15.48        14.17 
TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW 
       14.24        12.59        15.12         4.96         3.65         5.65 
TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K 
       12.20         8.65         2.70         7.23         5.98        11.41 
TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB 
       26.76         7.13        17.98       124.50        77.88        42.31 
TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5303 TCGA-E1-5304 
       23.51         7.50        44.42         0.56        67.46        41.13 
TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 
       79.99        57.93       134.27        78.21        95.57       130.78 
TCGA-E1-A7YO TCGA-E1-A7YW TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 
       75.02        36.82        32.35        14.33         0.23         0.20 
TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6691 
       47.77        25.48        34.36        18.77        14.93        23.97 
TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 
       18.44        15.35        17.88        22.55        20.61        20.09 
TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 
       12.95        13.68        14.24        16.01        20.09        14.96 
TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX 
       22.52        32.61        38.27        10.72        18.38        18.71 
TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 
       23.70        14.76        17.82        16.41        15.02        16.44 
TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q 
       28.54        10.78        36.66        20.45        13.58         5.72 
TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7471 TCGA-HT-7472 
       27.52         0.10         6.67        11.54         0.13         0.03 
TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 
       16.54         3.75        17.42         6.54        24.26         6.38 
TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 
       40.34        75.19        95.93       106.95       172.77         4.01 
TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 
        5.03        29.85        23.18       122.47         4.57        17.29 
TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 
        3.16        22.06        45.99        56.09        57.60         0.23 
TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 
       14.27         0.16        16.24         0.76        44.68         6.05 
TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 
       42.74         0.10        31.69        14.96         0.10         0.10 
TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 
        2.96        17.52         6.90        14.53        39.48        19.23 
TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 
       39.09         0.23        50.63         0.49        23.61        37.15 
TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 
        0.33         0.13         5.33        35.47         3.72        11.28 
TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 
       31.43         1.64        16.24         9.40        63.55         0.10 
TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8107 TCGA-HT-8109 
       37.87        33.01        12.23         6.25         0.46         5.56 
TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8563 TCGA-HT-8564 
       13.78         0.23        29.59        34.19        28.27        15.72 
TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB 
        0.23        26.04         0.13         0.07        27.35         0.10 
TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 
        5.33         2.70        16.93         1.81        16.14        16.83 
TCGA-HT-A619 TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K 
       21.40        17.52        17.65         2.43        10.52        15.35 
TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 
       11.05         0.10        29.92        19.89         8.32        19.23 
TCGA-HW-7491 TCGA-HW-7493 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 
       40.18        35.90         4.31        21.70        21.60        19.59 
TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-IK-7675 TCGA-IK-8125 
       17.82        20.35        12.76        20.81        19.00        42.77 
TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ 
       14.40        14.40         0.23         1.64         2.37         2.30 
TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U 
        4.11         5.88         7.63         0.76         1.28         0.16 
TCGA-P5-A72W TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-QH-A65R 
       10.42        11.64         0.20         9.01        13.61        15.16 
TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU 
        2.53        12.62        15.85        14.04        19.33        14.83 
TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 
       14.53        13.61        12.23         2.20         9.17        10.29 
TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC 
       14.53        16.34        16.73         1.91        16.50         5.03 
TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M 
       11.08        12.99        88.83        94.03        32.65        59.38 
TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 
       30.87         5.46         9.90        28.08         2.07        19.59 
TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX 
       30.67        62.17        87.12        18.77        37.84        34.49 
TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 
       31.33        28.70        22.95        23.64        32.61        16.08 
TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG 
       98.24        95.93       106.39        69.50        72.59        80.12 
TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO 
       32.45        84.99        31.10        19.86        15.91        18.61 
TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY 
       15.16        14.07        36.13         7.92        22.32        23.51 
TCGA-S9-A7IZ TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QY 
        7.13         8.19         2.04        17.03        15.06        28.37 
TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R3 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89Z 
       13.02       169.84        99.06        98.63        31.59        11.97 
TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B 
       49.45        48.33        49.32        34.78        48.39        24.92 
TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84J TCGA-TM-A84L 
       16.18        59.05        40.64        30.44        24.16        40.83 
TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T 
       24.79        33.24        25.38        18.61        14.93        23.80 
TCGA-TQ-A7RH TCGA-TQ-A7RW TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB 
       15.98        26.99        43.04        30.08        13.51         0.10 
TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS 
        7.89        35.93        23.47        37.05        16.01        23.21 
TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A 
        8.05        51.06        13.32        43.96        39.88        43.40 
TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       45.80        46.88        37.71        20.81 

  DEL PEAK 29(12P13.1) MUTATED DEL PEAK 29(12P13.1) WILD-TYPE 
                          0.10                           0.03 
  DEL PEAK 29(12P13.1) MUTATED DEL PEAK 29(12P13.1) WILD-TYPE 
                         92.65                         211.17 
  DEL PEAK 29(12P13.1) MUTATED DEL PEAK 29(12P13.1) WILD-TYPE 
                        14.140                         14.845 
[1] "0.1 - 92.7 (14.1)"  "0.0 - 211.2 (14.8)"
[1] "hr=" "1.2"
D61V2, continuous
D61V3, binary
                                cls
clus                               0   1
  DEL PEAK 29(12P13.1) MUTATED    71  35
  DEL PEAK 29(12P13.1) WILD-TYPE 499 437
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 29(12P13.1) MUTATED     71   35
  DEL PEAK 29(12P13.1) WILD-TYPE  499  437
                        clus
vv                       DEL PEAK 29(12P13.1) MUTATED
  BRAIN                                            71
  CENTRAL NERVOUS SYSTEM                           35
                        clus
vv                       DEL PEAK 29(12P13.1) WILD-TYPE
  BRAIN                                             499
  CENTRAL NERVOUS SYSTEM                            437
[1] 2 2
[1] FALSE
D61V4, binary
                                cls
clus                               0   1
  DEL PEAK 29(12P13.1) MUTATED    46  60
  DEL PEAK 29(12P13.1) WILD-TYPE 384 552
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 29(12P13.1) MUTATED     46   60
  DEL PEAK 29(12P13.1) WILD-TYPE  384  552
        clus
vv       DEL PEAK 29(12P13.1) MUTATED DEL PEAK 29(12P13.1) WILD-TYPE
  FEMALE                           46                            384
  MALE                             60                            552
[1] 2 2
[1] FALSE
D61V5, continuous
                                vv
clus                             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  DEL PEAK 29(12P13.1) MUTATED            19                             1
  DEL PEAK 29(12P13.1) WILD-TYPE         157                            26
                                vv
clus                             OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  DEL PEAK 29(12P13.1) MUTATED                  9                 7
  DEL PEAK 29(12P13.1) WILD-TYPE              109               171
                                vv
clus                             TREATED PRIMARY GBM
  DEL PEAK 29(12P13.1) MUTATED                     1
  DEL PEAK 29(12P13.1) WILD-TYPE                  17
                                vv
clus                             UNTREATED PRIMARY (DE NOVO) GBM
  DEL PEAK 29(12P13.1) MUTATED                                69
  DEL PEAK 29(12P13.1) WILD-TYPE                             456
D61V6, multiclass
                                 clus
vv                                DEL PEAK 29(12P13.1) MUTATED
  ASTROCYTOMA                                               19
  GLIOBLASTOMA MULTIFORME (GBM)                              1
  OLIGOASTROCYTOMA                                           9
  OLIGODENDROGLIOMA                                          7
  TREATED PRIMARY GBM                                        1
  UNTREATED PRIMARY (DE NOVO) GBM                           69
                                 clus
vv                                DEL PEAK 29(12P13.1) WILD-TYPE
  ASTROCYTOMA                                                157
  GLIOBLASTOMA MULTIFORME (GBM)                               26
  OLIGOASTROCYTOMA                                           109
  OLIGODENDROGLIOMA                                          171
  TREATED PRIMARY GBM                                         17
  UNTREATED PRIMARY (DE NOVO) GBM                            456
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D61V7, binary
                                cls
clus                               0   1
  DEL PEAK 29(12P13.1) MUTATED    61  45
  DEL PEAK 29(12P13.1) WILD-TYPE 413 523
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 29(12P13.1) MUTATED     61   45
  DEL PEAK 29(12P13.1) WILD-TYPE  413  523
     clus
vv    DEL PEAK 29(12P13.1) MUTATED DEL PEAK 29(12P13.1) WILD-TYPE
  NO                            61                            413
  YES                           45                            523
[1] 2 2
[1] FALSE
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 29(12P13.1) MUTATED                                  0     2
  DEL PEAK 29(12P13.1) WILD-TYPE                                1    19
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 29(12P13.1) MUTATED                           2    98
  DEL PEAK 29(12P13.1) WILD-TYPE                        62   824
D61V8, multiclass
                                  clus
vv                                 DEL PEAK 29(12P13.1) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            0
  ASIAN                                                       2
  BLACK OR AFRICAN AMERICAN                                   2
  WHITE                                                      98
                                  clus
vv                                 DEL PEAK 29(12P13.1) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              1
  ASIAN                                                        19
  BLACK OR AFRICAN AMERICAN                                    62
  WHITE                                                       824
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D61V9, binary
                                cls
clus                               0   1
  DEL PEAK 29(12P13.1) MUTATED     1  91
  DEL PEAK 29(12P13.1) WILD-TYPE  29 800
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 29(12P13.1) MUTATED      1   91
  DEL PEAK 29(12P13.1) WILD-TYPE   29  800
                        clus
vv                       DEL PEAK 29(12P13.1) MUTATED
  HISPANIC OR LATINO                                1
  NOT HISPANIC OR LATINO                           91
                        clus
vv                       DEL PEAK 29(12P13.1) WILD-TYPE
  HISPANIC OR LATINO                                 29
  NOT HISPANIC OR LATINO                            800
[1] 2 2
[1] FALSE

Clustering(62) Variable = DEL PEAK 30(12Q12) MUTATION ANALYSIS
D62V1, survival
                              sevent
clus2                            0   1
  DEL PEAK 30(12Q12) MUTATED    67  72
  DEL PEAK 30(12Q12) WILD-TYPE 413 487
  DEL PEAK 30(12Q12) MUTATED DEL PEAK 30(12Q12) WILD-TYPE 
                         139                          900 
  DEL PEAK 30(12Q12) MUTATED DEL PEAK 30(12Q12) WILD-TYPE 
                          72                          487 
$`DEL PEAK 30(12Q12) MUTATED`
TCGA-02-0034 TCGA-02-0046 TCGA-02-0055 TCGA-02-0071 TCGA-02-0075 TCGA-02-0084 
       14.14         6.87         2.50         5.49        20.84        12.62 
TCGA-02-0087 TCGA-02-0102 TCGA-02-0104 TCGA-02-0113 TCGA-06-0146 TCGA-06-0147 
       57.76        27.02        65.00        92.65        20.09        17.79 
TCGA-06-0149 TCGA-06-0159 TCGA-06-0173 TCGA-06-0175 TCGA-06-0184 TCGA-06-0190 
        8.61         9.44         4.47         4.04        69.90        10.42 
TCGA-06-0195 TCGA-06-0197 TCGA-06-0221 TCGA-06-0237 TCGA-06-0410 TCGA-06-0414 
        7.40         5.56        19.82        13.64         4.70        35.11 
TCGA-06-0875 TCGA-06-5856 TCGA-06-6389 TCGA-06-6390 TCGA-06-6694 TCGA-06-A7TL 
       43.46         3.75         7.79         5.39         7.36         5.42 
TCGA-08-0245 TCGA-08-0348 TCGA-08-0349 TCGA-08-0351 TCGA-08-0386 TCGA-08-0510 
       37.84        12.16         9.80        65.33        18.02         4.27 
TCGA-08-0514 TCGA-12-0619 TCGA-12-0662 TCGA-12-1600 TCGA-12-3646 TCGA-14-0740 
       11.08        34.92        38.17        14.73        44.02        11.97 
TCGA-14-0783 TCGA-14-0813 TCGA-14-0817 TCGA-14-0867 TCGA-14-0871 TCGA-14-1451 
        6.21         1.35         5.39         2.04        28.93        23.11 
TCGA-14-1453 TCGA-14-1458 TCGA-14-1794 TCGA-14-1821 TCGA-14-3477 TCGA-16-0849 
        1.15         6.67         0.99        17.79         3.78        26.07 
TCGA-16-0850 TCGA-16-1056 TCGA-19-0957 TCGA-19-1388 TCGA-19-1390 TCGA-19-2623 
       16.37        14.01        21.90        12.95        25.38         7.53 
TCGA-19-4065 TCGA-19-5960 TCGA-26-1438 TCGA-26-5132 TCGA-26-5136 TCGA-28-1746 
        7.04        14.96        10.03         9.40        18.97         0.20 
TCGA-28-1756 TCGA-32-1978 TCGA-32-2494 TCGA-32-4208 TCGA-32-4210 TCGA-41-2571 
        2.83        15.85        20.78        21.14         3.72         0.85 
TCGA-41-5651 TCGA-76-4935 TCGA-76-6193 TCGA-RR-A6KA TCGA-CS-4941 TCGA-CS-6665 
       15.12        10.78         2.70         6.28         7.69        12.43 
TCGA-DB-5275 TCGA-DB-5277 TCGA-DB-5279 TCGA-DB-A4XF TCGA-DB-A4XH TCGA-DB-A75K 
       47.93        50.86        44.52        33.57        31.63        12.10 
TCGA-DH-A66B TCGA-DU-5871 TCGA-DU-6401 TCGA-DU-6542 TCGA-DU-7007 TCGA-DU-7008 
       42.05        18.94        87.45         7.73        62.96       156.23 
TCGA-DU-7010 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-A5TU TCGA-DU-A5TY TCGA-DU-A6S6 
       14.99        16.96        15.48         3.65        12.20        77.98 
TCGA-DU-A76O TCGA-DU-A76R TCGA-E1-5302 TCGA-E1-5304 TCGA-FG-6689 TCGA-FG-6690 
        7.13        21.30        50.14        41.13        14.93        24.99 
TCGA-FG-A4MX TCGA-FG-A6J3 TCGA-HT-7470 TCGA-HT-7474 TCGA-HT-7478 TCGA-HT-7686 
       18.71        22.26        40.11         3.75         6.38        42.74 
TCGA-HT-7688 TCGA-HT-7690 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8018 TCGA-HT-8106 
       31.69         0.10        11.28        31.43        37.87         0.10 
TCGA-HT-8108 TCGA-HT-8563 TCGA-HT-A5R7 TCGA-HT-A618 TCGA-HT-A61B TCGA-P5-A5EW 
        2.50        28.27        20.22        16.83        17.52         6.71 
TCGA-P5-A5EZ TCGA-P5-A5F4 TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A731 TCGA-S9-A6TV 
        2.30         0.76        10.42        13.25         9.01        18.77 
TCGA-S9-A6U1 TCGA-S9-A6UA TCGA-S9-A6WQ TCGA-S9-A7QX TCGA-S9-A7R4 TCGA-S9-A7R7 
       17.62         5.85        14.07        13.12        30.05        98.63 
TCGA-S9-A89V TCGA-TM-A84I TCGA-VM-A8C8 TCGA-VM-A8CB TCGA-WH-A86K TCGA-WY-A859 
       18.71        28.08        43.04         0.10        13.32        39.88 
TCGA-WY-A85B 
       45.80 

$`DEL PEAK 30(12Q12) WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
       11.77         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 
       20.71        82.59        20.61        87.06        77.65        20.12 
TCGA-02-0024 TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 
       53.10        42.74        24.59        12.16        90.58         2.83 
TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0047 TCGA-02-0048 
        3.62        10.72        10.52        18.31        14.73         3.22 
TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 
       15.09        12.59         6.54        19.86         8.35         9.57 
TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 TCGA-02-0074 
        6.02        19.73        26.43        28.70        25.05        10.19 
TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0085 TCGA-02-0086 TCGA-02-0089 
       27.25        89.72        22.72        51.32         8.81        16.96 
TCGA-02-0099 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0114 TCGA-02-0115 
        3.48        11.67        17.65        23.18        99.98        15.65 
TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 
       48.95        16.54        16.93        17.72        10.75        14.47 
TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 
        3.98        13.87        14.20        15.95        12.23         9.90 
TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 
        7.73        10.62         7.33        15.91        25.71         4.37 
TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 
       25.12        10.59        12.39        14.50        10.55        47.11 
TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 
       11.34         9.27        16.21         3.35        16.80        12.92 
TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 
       15.32        15.45        20.32         2.70         6.15        20.38 
TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 
       47.61         6.94         3.98        22.72        33.67        12.95 
TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 
       25.35        14.30        26.70        24.23        11.90         0.20 
TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0148 TCGA-06-0150 
       10.29         2.20        11.74         2.33        10.09        19.46 
TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 
       46.59        12.33        13.94        10.45         3.19        10.82 
TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 
       11.80         3.42        56.91        10.65         5.85        19.66 
TCGA-06-0169 TCGA-06-0171 TCGA-06-0174 TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 
        3.29        13.12         3.22        91.00         4.18        88.14 
TCGA-06-0179 TCGA-06-0182 TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 
       20.25         3.65        73.84        27.22        44.58        15.42 
TCGA-06-0192 TCGA-06-0194 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 
       38.96         4.67         0.39         7.66         8.42         7.63 
TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 
        7.40        11.84         0.53        15.02        24.16         0.72 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 
       13.32        20.42        48.69        10.82         9.01         0.26 
TCGA-06-0409 TCGA-06-0412 TCGA-06-0413 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       72.36         9.57         3.16        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0876 TCGA-06-0877 
        7.86         2.70         2.70         0.92        46.19         5.65 
TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 
        7.17        40.41        16.57        20.78        26.76        23.93 
TCGA-06-1086 TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 
        6.84         4.04        26.79        11.84        15.32        13.61 
TCGA-06-1805 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       33.90        15.32         1.08        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 
       12.56        30.64         5.95        16.64         5.98         4.37 
TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 
        0.43        31.50        11.74         3.55         8.35         4.54 
TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 TCGA-06-5858 
        8.81         8.98         8.55         6.71         2.73         6.15 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6391 TCGA-06-6693 TCGA-06-6695 TCGA-06-6697 
        4.57         5.23         1.48       120.56         8.32        12.85 
TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-06-A5U0 TCGA-06-A5U1 
        4.77         1.55         4.77         4.96         4.70         1.87 
TCGA-06-A6S0 TCGA-06-A6S1 TCGA-06-A7TK TCGA-08-0244 TCGA-08-0246 TCGA-08-0344 
        3.12         2.56         5.39        22.68         4.18       115.86 
TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0350 TCGA-08-0352 TCGA-08-0353 
        1.74         8.42        25.71        29.23         1.28         8.42 
TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 
       17.95        24.56        31.10        37.58        22.29         3.39 
TCGA-08-0375 TCGA-08-0380 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 
       12.23        14.93        15.35        13.97         0.72        12.56 
TCGA-08-0512 TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 
       42.15        19.59        58.68        19.33        10.75         4.80 
TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 TCGA-12-0616 
        7.27        15.98        18.41         7.56        15.35        14.73 
TCGA-12-0618 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0670 
       12.99        10.45         7.59        94.78         0.10        25.97 
TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 
       26.66        12.13         3.65        20.38        28.41        15.06 
TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 
       53.85        43.23         7.63         9.73        14.93        14.86 
TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 
       91.76        24.79        18.48        10.62        23.51        27.78 
TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 
       38.76         8.94        20.58       127.59         5.82         7.59 
TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 
       33.21        21.73        15.98        12.23        15.85         9.11 
TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 TCGA-12-1598 TCGA-12-1599 TCGA-12-1602 
       14.53         3.98         4.14        15.65        25.68         6.77 
TCGA-12-3644 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 
       59.77        26.93        15.22        10.95        12.69        34.92 
TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0781 
       14.53        14.93         3.22         2.04        15.12         0.95 
TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 TCGA-14-0862 
       23.05         2.24        11.24        13.78         3.25         2.89 
TCGA-14-0865 TCGA-14-0866 TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 
       16.50        26.33        15.95        19.30         0.79         1.38 
TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1452 TCGA-14-1454 
        1.12         3.75        32.05        58.78         7.10        30.18 
TCGA-14-1455 TCGA-14-1456 TCGA-14-1459 TCGA-14-1795 TCGA-14-1823 TCGA-14-1825 
        0.92        40.96        12.43         1.97        17.85         7.63 
TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-4157 TCGA-15-0742 
        5.88         7.17        17.49         7.96         3.42        13.78 
TCGA-15-1444 TCGA-15-1446 TCGA-15-1447 TCGA-15-1449 TCGA-16-0846 TCGA-16-0848 
       50.53        19.10        53.19        13.28         3.91        17.59 
TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1060 TCGA-16-1062 
        4.31        29.03         4.57        10.29         9.14        21.24 
TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 
       13.97         6.41        11.77         8.61         0.66        14.27 
TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1389 TCGA-19-1392 
        3.39        10.75         9.07         5.95         4.64         3.65 
TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 
        7.17        12.66         3.25         0.13         9.67         4.87 
TCGA-19-2621 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-5947 
        1.08         0.16         4.08        24.23         7.00         6.64 
TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 
       17.19         8.02        18.90         4.73        12.10         1.78 
TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-19-A60I TCGA-19-A6J4 TCGA-19-A6J5 
       22.49        14.07        16.80        17.79         3.98        28.54 
TCGA-26-1439 TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5133 
       13.87         9.73        31.33         7.13         9.37        14.86 
TCGA-26-5134 TCGA-26-5135 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-26-A7UX 
        5.49         8.88         1.58         7.92         2.33        19.33 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 
        5.06        16.60         9.86        24.23        40.54        21.30 
TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 
       30.05        14.04        11.51        24.76        10.39        10.39 
TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 
       16.08         7.59         2.86        14.40        15.78         2.53 
TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 
        9.21         8.35         7.63         8.48         1.22         1.55 
TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 
        0.13         0.66         6.74         4.77         7.30         5.26 
TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 
       14.93        11.28        17.88        14.53        11.77        31.27 
TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 
       23.44        11.01        13.64         5.16        22.68        12.76 
TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 TCGA-32-1979 
        5.42        15.39        21.07         0.49         0.10        19.50 
TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 
        1.18         4.67        12.69        14.86        16.93        12.23 
TCGA-32-2495 TCGA-32-2615 TCGA-32-2616 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 
       15.02        15.95         7.36         8.84        22.78        25.18 
TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2572 TCGA-41-2573 
       12.59        19.86        10.85        19.23        13.35         8.94 
TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-6646 
        9.53         0.99         4.44        11.84         0.20        12.46 
TCGA-4W-AA9S TCGA-4W-AA9T TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 
        4.14        14.76         3.45        20.91         4.34        14.33 
TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 
        8.22         7.50         4.80         4.54         3.09         3.65 
TCGA-76-4931 TCGA-76-4934 TCGA-76-6191 TCGA-76-6192 TCGA-76-6280 TCGA-76-6282 
        9.17         2.53        16.70         3.29        11.38        17.06 
TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 
        8.35        20.98         4.83         5.03         0.23         9.27 
TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 TCGA-OX-A56R 
        7.73         7.79         1.61        17.72        26.30         5.92 
TCGA-RR-A6KC TCGA-CS-4938 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 
       20.55         4.70        43.89        18.15        10.62        64.64 
TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 
       40.18         0.10        21.01         9.96         6.38        17.69 
TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 
       23.84        17.95         8.48         7.56         8.02         7.40 
TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5276 TCGA-DB-5278 
        6.61       122.73        81.96        75.25        72.92        50.17 
TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC 
       36.56        78.28        46.42        18.84        30.21        46.72 
TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XG TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P 
       39.78        37.45        72.95        24.20        25.48        30.12 
TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W 
        5.98        31.40        27.45        27.81        29.23        14.40 
TCGA-DB-A64X TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 
       18.51        11.24        17.88        30.74        16.18        19.96 
TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66D 
       31.82        30.31        14.40         8.02        30.21        27.81 
TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU 
       17.19        17.19        54.25        13.12        13.38         3.45 
TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 
       18.61        18.02        14.56        17.46         6.74        13.38 
TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 
        8.45         6.81       182.33        17.49        15.16       211.17 
TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 
       52.11        22.42        49.02        75.16        46.06        65.75 
TCGA-DU-6400 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 
        1.22         7.04        11.64       133.74        19.89        16.83 
TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-7006 TCGA-DU-7009 TCGA-DU-7011 
       94.52       114.08         7.96        11.47       138.28       105.21 
TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7014 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 
        6.54         8.84       117.40        90.77        30.67        26.30 
TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 
       10.36         7.96        94.32        18.94        44.02        62.01 
TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 
       25.91        60.30        23.31        41.98         2.76         5.10 
TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8168 
       23.74        14.60        20.68        21.40        19.13        14.17 
TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TW TCGA-DU-A6S2 
       14.24        12.59        15.12         4.96         5.65         8.65 
TCGA-DU-A6S3 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A7T6 
        2.70         7.23         5.98        11.41        26.76        17.98 
TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG 
      124.50        77.88        42.31        23.51         7.50        44.42 
TCGA-DU-A7TJ TCGA-E1-5303 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 
        0.56        67.46        79.99        57.93       134.27        78.21 
TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YO TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7Z6 
       95.57       130.78        75.02        32.45        36.82        32.35 
TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 
       14.33         0.23         0.20        47.77        25.48        34.36 
TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 
       36.82        18.77        23.97        18.44        15.35        17.88 
TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 
       22.55        20.61        20.09        12.95        13.68        14.24 
TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT 
       16.01        20.09        14.96        22.52        32.61        38.27 
TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L 
       10.72        18.38        23.70        14.76        17.82        16.41 
TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 
       15.02        16.44        28.54        10.78        36.66        48.69 
TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 
       20.45        13.58         5.72        27.52         0.10         6.67 
TCGA-HT-7469 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7475 TCGA-HT-7476 
       11.54         0.13         0.03        16.54        17.42         6.54 
TCGA-HT-7477 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 
       24.26        40.34        75.19        95.93       106.95       172.77 
TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 
        4.01         5.03        29.85        23.18       122.47         4.57 
TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 
       17.29         3.16        22.06        45.99        56.09        57.60 
TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 
        0.23        14.27         0.16        16.24         0.76        44.68 
TCGA-HT-7684 TCGA-HT-7687 TCGA-HT-7689 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 
        6.05         0.10        14.96         0.10         2.96        17.52 
TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 
        6.90        14.53        39.48        19.23        39.09         0.23 
TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 
       50.63         0.49        23.61        37.15         0.33         0.13 
TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-8010 TCGA-HT-8011 
        3.68         5.33        35.47         3.72         1.64        16.24 
TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 
        9.40        63.55         0.10        33.01        12.23         6.25 
TCGA-HT-8107 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 
        0.46         5.56        13.78         0.23        29.59        34.19 
TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R9 TCGA-HT-A5RA 
       15.72         0.23        26.04         0.13         0.07        27.35 
TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 
        0.10         5.33         2.70        16.93         1.81        16.14 
TCGA-HT-A619 TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L 
       21.40        17.65         2.43        10.52        15.35        11.05 
TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 
        0.10        29.92        19.89         8.32        19.23        40.18 
TCGA-HW-7493 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 
       35.90         4.31        21.70        21.60        19.59        17.82 
TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 
       20.35        12.76        20.81        20.71        19.00        42.77 
TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5F0 
       14.40        14.40         0.23         1.64         2.37         4.11 
TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72Z TCGA-P5-A730 
        5.88         7.63         1.28         0.16        11.64         0.20 
TCGA-P5-A733 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z 
       13.61        15.16         2.53        12.62        15.85        14.04 
TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY 
       19.33        14.83        14.53        13.61        12.23         2.20 
TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 
        9.17        10.29        14.53        16.34        16.73         1.91 
TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML 
       16.50         5.03        11.08        12.99        88.83        94.03 
TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 
       32.65        59.38        30.87         5.46         9.90        28.08 
TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TW 
        2.07        19.59        30.67        62.17        87.12        37.84 
TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U2 TCGA-S9-A6U5 
       34.49        31.33        28.70        22.95        23.64        32.61 
TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE 
       16.08        98.24        95.93       106.39        69.50        72.59 
TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN 
       80.12        32.45        84.99        31.10        19.86        15.91 
TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY 
       18.61        15.16        36.13         7.92        22.32        23.51 
TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW 
        7.13        20.02         8.19         2.04        17.03        15.06 
TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R8 
       28.37        13.02       169.84        10.39        99.06        31.59 
TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF 
       11.97        49.45        48.33        49.32        34.78        48.39 
TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84J 
       24.92        16.18        59.05        40.64        30.44        24.16 
TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S 
       40.83        24.79        33.24        25.38        18.61        14.93 
TCGA-TM-A84T TCGA-TQ-A7RH TCGA-TQ-A7RW TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CD 
       23.80        15.98        26.99        30.08        13.51         7.89 
TCGA-VM-A8CE TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI 
       35.93        23.47        37.05        16.01        23.21         8.05 
TCGA-W9-A837 TCGA-WY-A858 TCGA-WY-A85A TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       51.06        43.96        43.40        46.88        37.71        20.81 

  DEL PEAK 30(12Q12) MUTATED DEL PEAK 30(12Q12) WILD-TYPE 
                        0.10                         0.03 
  DEL PEAK 30(12Q12) MUTATED DEL PEAK 30(12Q12) WILD-TYPE 
                      156.23                       211.17 
  DEL PEAK 30(12Q12) MUTATED DEL PEAK 30(12Q12) WILD-TYPE 
                      14.730                       14.795 
[1] "0.1 - 156.2 (14.7)" "0.0 - 211.2 (14.8)"
[1] "hr=" "1"  
D62V2, continuous
D62V3, binary
                              cls
clus                             0   1
  DEL PEAK 30(12Q12) MUTATED    76  64
  DEL PEAK 30(12Q12) WILD-TYPE 494 408
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 30(12Q12) MUTATED     76   64
  DEL PEAK 30(12Q12) WILD-TYPE  494  408
                        clus
vv                       DEL PEAK 30(12Q12) MUTATED
  BRAIN                                          76
  CENTRAL NERVOUS SYSTEM                         64
                        clus
vv                       DEL PEAK 30(12Q12) WILD-TYPE
  BRAIN                                           494
  CENTRAL NERVOUS SYSTEM                          408
[1] 2 2
[1] FALSE
D62V4, binary
                              cls
clus                             0   1
  DEL PEAK 30(12Q12) MUTATED    62  78
  DEL PEAK 30(12Q12) WILD-TYPE 368 534
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 30(12Q12) MUTATED     62   78
  DEL PEAK 30(12Q12) WILD-TYPE  368  534
        clus
vv       DEL PEAK 30(12Q12) MUTATED DEL PEAK 30(12Q12) WILD-TYPE
  FEMALE                         62                          368
  MALE                           78                          534
[1] 2 2
[1] FALSE
D62V5, continuous
                              vv
clus                           ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  DEL PEAK 30(12Q12) MUTATED            38                             3
  DEL PEAK 30(12Q12) WILD-TYPE         138                            24
                              vv
clus                           OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  DEL PEAK 30(12Q12) MUTATED                 15                11
  DEL PEAK 30(12Q12) WILD-TYPE              103               167
                              vv
clus                           TREATED PRIMARY GBM
  DEL PEAK 30(12Q12) MUTATED                     2
  DEL PEAK 30(12Q12) WILD-TYPE                  16
                              vv
clus                           UNTREATED PRIMARY (DE NOVO) GBM
  DEL PEAK 30(12Q12) MUTATED                                71
  DEL PEAK 30(12Q12) WILD-TYPE                             454
D62V6, multiclass
                                 clus
vv                                DEL PEAK 30(12Q12) MUTATED
  ASTROCYTOMA                                             38
  GLIOBLASTOMA MULTIFORME (GBM)                            3
  OLIGOASTROCYTOMA                                        15
  OLIGODENDROGLIOMA                                       11
  TREATED PRIMARY GBM                                      2
  UNTREATED PRIMARY (DE NOVO) GBM                         71
                                 clus
vv                                DEL PEAK 30(12Q12) WILD-TYPE
  ASTROCYTOMA                                              138
  GLIOBLASTOMA MULTIFORME (GBM)                             24
  OLIGOASTROCYTOMA                                         103
  OLIGODENDROGLIOMA                                        167
  TREATED PRIMARY GBM                                       16
  UNTREATED PRIMARY (DE NOVO) GBM                          454
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D62V7, binary
                              cls
clus                             0   1
  DEL PEAK 30(12Q12) MUTATED    60  80
  DEL PEAK 30(12Q12) WILD-TYPE 414 488
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 30(12Q12) MUTATED     60   80
  DEL PEAK 30(12Q12) WILD-TYPE  414  488
     clus
vv    DEL PEAK 30(12Q12) MUTATED DEL PEAK 30(12Q12) WILD-TYPE
  NO                          60                          414
  YES                         80                          488
[1] 2 2
[1] FALSE
                              vv
clus                           AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 30(12Q12) MUTATED                                  0     0
  DEL PEAK 30(12Q12) WILD-TYPE                                1    21
                              vv
clus                           BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 30(12Q12) MUTATED                           6   129
  DEL PEAK 30(12Q12) WILD-TYPE                        58   793
D62V8, multiclass
                                  clus
vv                                 DEL PEAK 30(12Q12) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                          0
  ASIAN                                                     0
  BLACK OR AFRICAN AMERICAN                                 6
  WHITE                                                   129
                                  clus
vv                                 DEL PEAK 30(12Q12) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                            1
  ASIAN                                                      21
  BLACK OR AFRICAN AMERICAN                                  58
  WHITE                                                     793
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D62V9, binary
                              cls
clus                             0   1
  DEL PEAK 30(12Q12) MUTATED     2 119
  DEL PEAK 30(12Q12) WILD-TYPE  28 772
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 30(12Q12) MUTATED      2  119
  DEL PEAK 30(12Q12) WILD-TYPE   28  772
                        clus
vv                       DEL PEAK 30(12Q12) MUTATED
  HISPANIC OR LATINO                              2
  NOT HISPANIC OR LATINO                        119
                        clus
vv                       DEL PEAK 30(12Q12) WILD-TYPE
  HISPANIC OR LATINO                               28
  NOT HISPANIC OR LATINO                          772
[1] 2 2
[1] FALSE

Clustering(63) Variable = DEL PEAK 31(12Q15) MUTATION ANALYSIS
D63V1, survival
                              sevent
clus2                            0   1
  DEL PEAK 31(12Q15) MUTATED    60  74
  DEL PEAK 31(12Q15) WILD-TYPE 420 485
  DEL PEAK 31(12Q15) MUTATED DEL PEAK 31(12Q15) WILD-TYPE 
                         134                          905 
  DEL PEAK 31(12Q15) MUTATED DEL PEAK 31(12Q15) WILD-TYPE 
                          74                          485 
$`DEL PEAK 31(12Q15) MUTATED`
TCGA-02-0034 TCGA-02-0052 TCGA-02-0055 TCGA-02-0071 TCGA-02-0075 TCGA-02-0084 
       14.14        12.59         2.50         5.49        20.84        12.62 
TCGA-02-0087 TCGA-02-0099 TCGA-02-0102 TCGA-02-0113 TCGA-02-0266 TCGA-02-2466 
       57.76         3.48        27.02        92.65        17.72        16.80 
TCGA-06-0140 TCGA-06-0146 TCGA-06-0147 TCGA-06-0149 TCGA-06-0152 TCGA-06-0159 
        0.20        20.09        17.79         8.61        12.33         9.44 
TCGA-06-0162 TCGA-06-0173 TCGA-06-0174 TCGA-06-0177 TCGA-06-0184 TCGA-06-0190 
        3.42         4.47         3.22         4.18        69.90        10.42 
TCGA-06-0197 TCGA-06-0221 TCGA-06-0237 TCGA-06-0410 TCGA-06-0414 TCGA-06-0649 
        5.56        19.82        13.64         4.70        35.11         2.10 
TCGA-06-0875 TCGA-06-0939 TCGA-06-6389 TCGA-06-6694 TCGA-06-6695 TCGA-06-A7TK 
       43.46        26.76         7.79         7.36         8.32         5.39 
TCGA-06-A7TL TCGA-08-0245 TCGA-08-0349 TCGA-08-0386 TCGA-08-0510 TCGA-08-0514 
        5.42        37.84         9.80        18.02         4.27        11.08 
TCGA-12-0616 TCGA-12-0619 TCGA-12-1088 TCGA-12-1600 TCGA-12-1602 TCGA-12-3646 
       14.73        34.92       127.59        14.73         6.77        44.02 
TCGA-14-0740 TCGA-14-0783 TCGA-14-0813 TCGA-14-0817 TCGA-14-0867 TCGA-14-0871 
       11.97         6.21         1.35         5.39         2.04        28.93 
TCGA-14-1451 TCGA-14-1453 TCGA-14-1794 TCGA-14-3477 TCGA-15-1447 TCGA-16-0849 
       23.11         1.15         0.99         3.78        53.19        26.07 
TCGA-16-0850 TCGA-19-0957 TCGA-19-1388 TCGA-19-1390 TCGA-19-2623 TCGA-19-2624 
       16.37        21.90        12.95        25.38         7.53         0.16 
TCGA-19-4065 TCGA-19-5960 TCGA-26-1438 TCGA-26-5132 TCGA-26-5135 TCGA-26-5136 
        7.04        14.96        10.03         9.40         8.88        18.97 
TCGA-28-5214 TCGA-32-4210 TCGA-32-4211 TCGA-41-2571 TCGA-74-6584 TCGA-76-6193 
       23.44         3.72        12.59         0.85         7.50         2.70 
TCGA-DB-5275 TCGA-DB-5277 TCGA-DB-5279 TCGA-DB-A4XH TCGA-DH-5142 TCGA-DH-A66B 
       47.93        50.86        44.52        31.63        30.31        42.05 
TCGA-DU-5871 TCGA-DU-6401 TCGA-DU-6542 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7010 
       18.94        87.45         7.73        62.96       156.23        14.99 
TCGA-DU-8167 TCGA-DU-A5TU TCGA-DU-A6S6 TCGA-DU-A76R TCGA-E1-5302 TCGA-E1-5304 
       15.48         3.65        77.98        21.30        50.14        41.13 
TCGA-E1-A7YV TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-A4MX TCGA-FG-A6J3 TCGA-HT-7470 
       32.45        14.93        24.99        18.71        22.26        40.11 
TCGA-HT-7474 TCGA-HT-7478 TCGA-HT-7686 TCGA-HT-7688 TCGA-HT-7690 TCGA-HT-7884 
        3.75         6.38        42.74        31.69         0.10        11.28 
TCGA-HT-7902 TCGA-HT-8018 TCGA-HT-8106 TCGA-HT-8108 TCGA-HT-8563 TCGA-HT-A5R7 
       31.43        37.87         0.10         2.50        28.27        20.22 
TCGA-HT-A618 TCGA-HT-A61B TCGA-IK-7675 TCGA-P5-A5EW TCGA-P5-A5EZ TCGA-P5-A5F4 
       16.83        17.52        19.00         6.71         2.30         0.76 
TCGA-P5-A72W TCGA-P5-A72X TCGA-S9-A6TV TCGA-S9-A6U1 TCGA-S9-A6WQ TCGA-S9-A7QX 
       10.42        13.25        18.77        17.62        14.07        13.12 
TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A89V TCGA-TM-A84I TCGA-VM-A8C8 TCGA-WH-A86K 
       30.05        98.63        18.71        28.08        43.04        13.32 
TCGA-WY-A859 TCGA-WY-A85B 
       39.88        45.80 

$`DEL PEAK 31(12Q15) WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
       11.77         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 
       20.71        82.59        20.61        87.06        77.65        20.12 
TCGA-02-0024 TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 
       53.10        42.74        24.59        12.16        90.58         2.83 
TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 
        3.62        10.72        10.52        18.31         6.87        14.73 
TCGA-02-0048 TCGA-02-0051 TCGA-02-0054 TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 
        3.22        15.09         6.54        19.86         8.35         9.57 
TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 TCGA-02-0074 
        6.02        19.73        26.43        28.70        25.05        10.19 
TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0085 TCGA-02-0086 TCGA-02-0089 
       27.25        89.72        22.72        51.32         8.81        16.96 
TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0114 TCGA-02-0115 
       65.00        11.67        17.65        23.18        99.98        15.65 
TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 
       48.95        16.54        16.93        10.75        14.47         3.98 
TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 
       13.87        14.20        15.95        12.23         9.90         7.73 
TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 
       10.62         7.33        15.91        25.71         4.37        25.12 
TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 
       10.59        12.39        14.50        10.55        47.11        11.34 
TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 
        9.27        16.21         3.35        12.92        15.32        15.45 
TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 
       20.32         2.70         6.15        20.38        47.61         6.94 
TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 
        3.98        22.72        33.67        12.95        25.35        14.30 
TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 
       26.70        24.23        11.90        10.29         2.20        11.74 
TCGA-06-0145 TCGA-06-0148 TCGA-06-0150 TCGA-06-0151 TCGA-06-0154 TCGA-06-0155 
        2.33        10.09        19.46        46.59        13.94        10.45 
TCGA-06-0157 TCGA-06-0158 TCGA-06-0160 TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 
        3.19        10.82        11.80        56.91        10.65         5.85 
TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0175 TCGA-06-0176 TCGA-06-0178 
       19.66         3.29        13.12         4.04        91.00        88.14 
TCGA-06-0179 TCGA-06-0182 TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 
       20.25         3.65        73.84        27.22        44.58        15.42 
TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 
       38.96         4.67         7.40         0.39         7.66         8.42 
TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 
        7.63         7.40        11.84         0.53        15.02        24.16 
TCGA-06-0219 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 
        0.72        13.32        20.42        48.69        10.82         9.01 
TCGA-06-0402 TCGA-06-0409 TCGA-06-0412 TCGA-06-0413 TCGA-06-0644 TCGA-06-0645 
        0.26        72.36         9.57         3.16        12.62         5.75 
TCGA-06-0646 TCGA-06-0648 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        5.75         9.80        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0876 TCGA-06-0877 
        7.86         2.70         2.70         0.92        46.19         5.65 
TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-1084 TCGA-06-1086 
        7.17        40.41        16.57        20.78        23.93         6.84 
TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 
        4.04        26.79        11.84        15.32        13.61        33.90 
TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 
       15.32         1.08        12.49         4.93        17.65        12.56 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 
       30.64         5.95        16.64         5.98         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       31.50        11.74         3.55         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         6.71         2.73         3.75         6.15 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6697 
        4.57         5.23         5.39         1.48       120.56        12.85 
TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-06-A5U0 TCGA-06-A5U1 
        4.77         1.55         4.77         4.96         4.70         1.87 
TCGA-06-A6S0 TCGA-06-A6S1 TCGA-08-0244 TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 
        3.12         2.56        22.68         4.18       115.86         1.74 
TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 
        8.42        25.71        12.16        29.23        65.33         1.28 
TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 
        8.42        17.95        24.56        31.10        37.58        22.29 
TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 
        3.39        12.23        14.93        15.35        13.97         0.72 
TCGA-08-0509 TCGA-08-0512 TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 
       12.56        42.15        19.59        58.68        19.33        10.75 
TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 
        4.80         7.27        15.98        18.41         7.56        15.35 
TCGA-12-0618 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 
       12.99        10.45         7.59        94.78         0.10        38.17 
TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 
       25.97        26.66        12.13         3.65        20.38        28.41 
TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 
       15.06        53.85        43.23         7.63         9.73        14.93 
TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 
       14.86        91.76        24.79        18.48        10.62        23.51 
TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1089 TCGA-12-1090 
       27.78        38.76         8.94        20.58         5.82         7.59 
TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 
       33.21        21.73        15.98        12.23        15.85         9.11 
TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 TCGA-12-1598 TCGA-12-1599 TCGA-12-3644 
       14.53         3.98         4.14        15.65        25.68        59.77 
TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 
       26.93        15.22        10.95        12.69        34.92        14.53 
TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0781 TCGA-14-0786 
       14.93         3.22         2.04        15.12         0.95        23.05 
TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 TCGA-14-0862 TCGA-14-0865 
        2.24        11.24        13.78         3.25         2.89        16.50 
TCGA-14-0866 TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 
       26.33        15.95        19.30         0.79         1.38         1.12 
TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1452 TCGA-14-1454 TCGA-14-1455 
        3.75        32.05        58.78         7.10        30.18         0.92 
TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1795 TCGA-14-1821 TCGA-14-1823 
       40.96         6.67        12.43         1.97        17.79        17.85 
TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-4157 
        7.63         5.88         7.17        17.49         7.96         3.42 
TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 TCGA-15-1449 TCGA-16-0846 TCGA-16-0848 
       13.78        50.53        19.10        13.28         3.91        17.59 
TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 
        4.31        29.03         4.57        10.29        14.01         9.14 
TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 TCGA-19-0960 TCGA-19-0962 
       21.24        13.97         6.41        11.77         8.61         0.66 
TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1389 
       14.27         3.39        10.75         9.07         5.95         4.64 
TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 
        3.65         7.17        12.66         3.25         0.13         9.67 
TCGA-19-2620 TCGA-19-2621 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-5947 
        4.87         1.08         4.08        24.23         7.00         6.64 
TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 
       17.19         8.02        18.90         4.73        12.10         1.78 
TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-19-A60I TCGA-19-A6J4 TCGA-19-A6J5 
       22.49        14.07        16.80        17.79         3.98        28.54 
TCGA-26-1439 TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5133 
       13.87         9.73        31.33         7.13         9.37        14.86 
TCGA-26-5134 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-26-A7UX TCGA-27-1830 
        5.49         1.58         7.92         2.33        19.33         5.06 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 
       16.60         9.86        24.23        40.54        21.30        30.05 
TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 
       14.04        11.51        24.76        10.39        10.39        16.08 
TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 
        7.59         2.86        14.40        15.78         0.20         2.53 
TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 
        9.21         8.35         7.63         8.48         1.22         1.55 
TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 TCGA-28-2513 
        2.83         0.13         0.66         6.74         4.77         7.30 
TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 
        5.26        14.93        11.28        17.88        14.53        11.77 
TCGA-28-5213 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 
       31.27        11.01        13.64         5.16        22.68        12.76 
TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 
        5.42        15.39        21.07         0.49         0.10        15.85 
TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 
       19.50         1.18         4.67        12.69        14.86        16.93 
TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2616 TCGA-32-2632 
       12.23        20.78        15.02        15.95         7.36         8.84 
TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 
       22.78        25.18        21.14        19.86        10.85        19.23 
TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 
       13.35         8.94         9.53         0.99         4.44        11.84 
TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-4W-AA9S TCGA-4W-AA9T TCGA-74-6573 
        0.20        15.12        12.46         4.14        14.76         3.45 
TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-76-4925 TCGA-76-4926 
       20.91         4.34        14.33         8.22         4.80         4.54 
TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 
        3.09         3.65         9.17         2.53        10.78        16.70 
TCGA-76-6192 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 
        3.29        11.38        17.06         8.35        20.98         4.83 
TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 
        5.03         0.23         9.27         7.73         7.79         1.61 
TCGA-81-5911 TCGA-87-5896 TCGA-OX-A56R TCGA-RR-A6KA TCGA-RR-A6KC TCGA-CS-4938 
       17.72        26.30         5.92         6.28        20.55         4.70 
TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 
        7.69        43.89        18.15        10.62        64.64        40.18 
TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 
        0.10        21.01         9.96         6.38        17.69        23.84 
TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 
       17.95        12.43         8.48         7.56         8.02         7.40 
TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5276 TCGA-DB-5278 
        6.61       122.73        81.96        75.25        72.92        50.17 
TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC 
       36.56        78.28        46.42        18.84        30.21        46.72 
TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A64L TCGA-DB-A64O 
       39.78        37.45        33.57        72.95        24.20        25.48 
TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V 
       30.12         5.98        31.40        27.45        27.81        29.23 
TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O 
       14.40        18.51        12.10        11.24        17.88        30.74 
TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 
       16.18        19.96        31.82        14.40         8.02        30.21 
TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT 
       27.81        17.19        17.19        54.25        13.12        13.38 
TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 
        3.45        18.61        18.02        14.56        17.46         6.74 
TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5872 TCGA-DU-5874 
       13.38         8.45         6.81       182.33        17.49        15.16 
TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 
      211.17        52.11        22.42        49.02        75.16        46.06 
TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 
       65.75         1.22         7.04        11.64       133.74        19.89 
TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-7006 TCGA-DU-7009 
       16.83        94.52       114.08         7.96        11.47       138.28 
TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7014 TCGA-DU-7015 TCGA-DU-7018 
      105.21         6.54         8.84       117.40        90.77        30.67 
TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 
       26.30        10.36         7.96        94.32        18.94        44.02 
TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 
       62.01        25.91        60.30        23.31        41.98         2.76 
TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 
        5.10        23.74        14.60        20.68        21.40        19.13 
TCGA-DU-8166 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT 
       16.96        14.17        14.24        12.59        15.12         4.96 
TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S7 TCGA-DU-A6S8 
        5.65        12.20         8.65         2.70         7.23         5.98 
TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA 
       11.41        26.76         7.13        17.98       124.50        77.88 
TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5303 
       42.31        23.51         7.50        44.42         0.56        67.46 
TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 
       79.99        57.93       134.27        78.21        95.57       130.78 
TCGA-E1-A7YO TCGA-E1-A7YW TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 
       75.02        36.82        32.35        14.33         0.23         0.20 
TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6691 
       47.77        25.48        34.36        36.82        18.77        23.97 
TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 
       18.44        15.35        17.88        22.55        20.61        20.09 
TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 
       12.95        13.68        14.24        16.01        20.09        14.96 
TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MY 
       22.52        32.61        38.27        10.72        18.38        23.70 
TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A70Y 
       14.76        17.82        16.41        15.02        16.44        28.54 
TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q 
       10.78        36.66        48.69        20.45        13.58         5.72 
TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7471 TCGA-HT-7472 
       27.52         0.10         6.67        11.54         0.13         0.03 
TCGA-HT-7473 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7479 TCGA-HT-7480 
       16.54        17.42         6.54        24.26        40.34        75.19 
TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 
       95.93       106.95       172.77         4.01         5.03        29.85 
TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 
       23.18       122.47         4.57        17.29         3.16        22.06 
TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 
       45.99        56.09        57.60         0.23        14.27         0.16 
TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7687 TCGA-HT-7689 
       16.24         0.76        44.68         6.05         0.10        14.96 
TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 
        0.10         2.96        17.52         6.90        14.53        39.48 
TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 
       19.23        39.09         0.23        50.63         0.49        23.61 
TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 
       37.15         0.33         0.13         3.68         5.33        35.47 
TCGA-HT-7882 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 
        3.72         1.64        16.24         9.40        63.55         0.10 
TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8107 TCGA-HT-8109 TCGA-HT-8110 
       33.01        12.23         6.25         0.46         5.56        13.78 
TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV 
        0.23        29.59        34.19        15.72         0.23        26.04 
TCGA-HT-A5R5 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 
        0.13         0.07        27.35         0.10         5.33         2.70 
TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A619 TCGA-HT-A61C TCGA-HT-A74H 
       16.93         1.81        16.14        21.40        17.65         2.43 
TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 
       10.52        15.35        11.05         0.10        29.92        19.89 
TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7493 TCGA-HW-7495 TCGA-HW-8319 
        8.32        19.23        40.18        35.90         4.31        21.70 
TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL 
       21.60        19.59        17.82        20.35        12.76        20.81 
TCGA-HW-A5KM TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EX 
       20.71        42.77        14.40        14.40         0.23         1.64 
TCGA-P5-A5EY TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F6 TCGA-P5-A72U 
        2.37         4.11         5.88         7.63         1.28         0.16 
TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-QH-A65R TCGA-QH-A65S 
       11.64         0.20         9.01        13.61        15.16         2.53 
TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV 
       12.62        15.85        14.04        19.33        14.83        14.53 
TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 
       13.61        12.23         2.20         9.17        10.29        14.53 
TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X 
       16.34        16.73         1.91        16.50         5.03        11.08 
TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X 
       12.99        88.83        94.03        32.65        59.38        30.87 
TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 
        5.46         9.90        28.08         2.07        19.59        30.67 
TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ 
       62.17        87.12        37.84        34.49        31.33        28.70 
TCGA-S9-A6U0 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 
       22.95        23.64        32.61        16.08        98.24        95.93 
TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH 
        5.85       106.39        69.50        72.59        80.12        32.45 
TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP 
       84.99        31.10        19.86        15.91        18.61        15.16 
TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 
       36.13         7.92        22.32        23.51         7.13        20.02 
TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QY TCGA-S9-A7QZ 
        8.19         2.04        17.03        15.06        28.37        13.02 
TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R8 TCGA-S9-A89Z TCGA-TM-A7C3 
      169.84        10.39        99.06        31.59        11.97        49.45 
TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C 
       48.33        49.32        34.78        48.39        24.92        16.18 
TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M 
       59.05        40.64        30.44        24.16        40.83        24.79 
TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RH 
       33.24        25.38        18.61        14.93        23.80        15.98 
TCGA-TQ-A7RW TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE 
       26.99        30.08        13.51         0.10         7.89        35.93 
TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 
       23.47        37.05        16.01        23.21         8.05        51.06 
TCGA-WY-A858 TCGA-WY-A85A TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       43.96        43.40        46.88        37.71        20.81 

  DEL PEAK 31(12Q15) MUTATED DEL PEAK 31(12Q15) WILD-TYPE 
                        0.10                         0.03 
  DEL PEAK 31(12Q15) MUTATED DEL PEAK 31(12Q15) WILD-TYPE 
                      156.23                       211.17 
  DEL PEAK 31(12Q15) MUTATED DEL PEAK 31(12Q15) WILD-TYPE 
                      14.945                       14.760 
[1] "0.1 - 156.2 (14.9)" "0.0 - 211.2 (14.8)"
[1] "hr=" "1"  
D63V2, continuous
D63V3, binary
                              cls
clus                             0   1
  DEL PEAK 31(12Q15) MUTATED    78  57
  DEL PEAK 31(12Q15) WILD-TYPE 492 415
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 31(12Q15) MUTATED     78   57
  DEL PEAK 31(12Q15) WILD-TYPE  492  415
                        clus
vv                       DEL PEAK 31(12Q15) MUTATED
  BRAIN                                          78
  CENTRAL NERVOUS SYSTEM                         57
                        clus
vv                       DEL PEAK 31(12Q15) WILD-TYPE
  BRAIN                                           492
  CENTRAL NERVOUS SYSTEM                          415
[1] 2 2
[1] FALSE
D63V4, binary
                              cls
clus                             0   1
  DEL PEAK 31(12Q15) MUTATED    59  76
  DEL PEAK 31(12Q15) WILD-TYPE 371 536
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 31(12Q15) MUTATED     59   76
  DEL PEAK 31(12Q15) WILD-TYPE  371  536
        clus
vv       DEL PEAK 31(12Q15) MUTATED DEL PEAK 31(12Q15) WILD-TYPE
  FEMALE                         59                          371
  MALE                           76                          536
[1] 2 2
[1] FALSE
D63V5, continuous
                              vv
clus                           ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  DEL PEAK 31(12Q15) MUTATED            33                             4
  DEL PEAK 31(12Q15) WILD-TYPE         143                            23
                              vv
clus                           OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  DEL PEAK 31(12Q15) MUTATED                 13                11
  DEL PEAK 31(12Q15) WILD-TYPE              105               167
                              vv
clus                           TREATED PRIMARY GBM
  DEL PEAK 31(12Q15) MUTATED                     3
  DEL PEAK 31(12Q15) WILD-TYPE                  15
                              vv
clus                           UNTREATED PRIMARY (DE NOVO) GBM
  DEL PEAK 31(12Q15) MUTATED                                71
  DEL PEAK 31(12Q15) WILD-TYPE                             454
D63V6, multiclass
                                 clus
vv                                DEL PEAK 31(12Q15) MUTATED
  ASTROCYTOMA                                             33
  GLIOBLASTOMA MULTIFORME (GBM)                            4
  OLIGOASTROCYTOMA                                        13
  OLIGODENDROGLIOMA                                       11
  TREATED PRIMARY GBM                                      3
  UNTREATED PRIMARY (DE NOVO) GBM                         71
                                 clus
vv                                DEL PEAK 31(12Q15) WILD-TYPE
  ASTROCYTOMA                                              143
  GLIOBLASTOMA MULTIFORME (GBM)                             23
  OLIGOASTROCYTOMA                                         105
  OLIGODENDROGLIOMA                                        167
  TREATED PRIMARY GBM                                       15
  UNTREATED PRIMARY (DE NOVO) GBM                          454
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D63V7, binary
                              cls
clus                             0   1
  DEL PEAK 31(12Q15) MUTATED    61  74
  DEL PEAK 31(12Q15) WILD-TYPE 413 494
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 31(12Q15) MUTATED     61   74
  DEL PEAK 31(12Q15) WILD-TYPE  413  494
     clus
vv    DEL PEAK 31(12Q15) MUTATED DEL PEAK 31(12Q15) WILD-TYPE
  NO                          61                          413
  YES                         74                          494
[1] 2 2
[1] FALSE
                              vv
clus                           AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 31(12Q15) MUTATED                                  0     0
  DEL PEAK 31(12Q15) WILD-TYPE                                1    21
                              vv
clus                           BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 31(12Q15) MUTATED                           5   124
  DEL PEAK 31(12Q15) WILD-TYPE                        59   798
D63V8, multiclass
                                  clus
vv                                 DEL PEAK 31(12Q15) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                          0
  ASIAN                                                     0
  BLACK OR AFRICAN AMERICAN                                 5
  WHITE                                                   124
                                  clus
vv                                 DEL PEAK 31(12Q15) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                            1
  ASIAN                                                      21
  BLACK OR AFRICAN AMERICAN                                  59
  WHITE                                                     798
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D63V9, binary
                              cls
clus                             0   1
  DEL PEAK 31(12Q15) MUTATED     4 114
  DEL PEAK 31(12Q15) WILD-TYPE  26 777
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 31(12Q15) MUTATED      4  114
  DEL PEAK 31(12Q15) WILD-TYPE   26  777
                        clus
vv                       DEL PEAK 31(12Q15) MUTATED
  HISPANIC OR LATINO                              4
  NOT HISPANIC OR LATINO                        114
                        clus
vv                       DEL PEAK 31(12Q15) WILD-TYPE
  HISPANIC OR LATINO                               26
  NOT HISPANIC OR LATINO                          777
[1] 2 2
[1] FALSE

Clustering(64) Variable = DEL PEAK 32(13Q14.2) MUTATION ANALYSIS
D64V1, survival
                                sevent
clus2                              0   1
  DEL PEAK 32(13Q14.2) MUTATED   137 229
  DEL PEAK 32(13Q14.2) WILD-TYPE 343 330
  DEL PEAK 32(13Q14.2) MUTATED DEL PEAK 32(13Q14.2) WILD-TYPE 
                           366                            673 
  DEL PEAK 32(13Q14.2) MUTATED DEL PEAK 32(13Q14.2) WILD-TYPE 
                           229                            330 
$`DEL PEAK 32(13Q14.2) MUTATED`
TCGA-02-0001 TCGA-02-0006 TCGA-02-0007 TCGA-02-0010 TCGA-02-0011 TCGA-02-0023 
       11.77        18.35        23.18        35.41        20.71        20.12 
TCGA-02-0024 TCGA-02-0026 TCGA-02-0033 TCGA-02-0034 TCGA-02-0039 TCGA-02-0051 
       53.10        24.59         2.83        14.14        10.52        15.09 
TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0059 TCGA-02-0064 TCGA-02-0068 
       12.59         6.54         2.50         9.57        19.73        26.43 
TCGA-02-0069 TCGA-02-0075 TCGA-02-0079 TCGA-02-0099 TCGA-02-0104 TCGA-02-0106 
       28.70        20.84        27.25         3.48        65.00        11.67 
TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 TCGA-02-0321 TCGA-02-0325 TCGA-02-0330 
       92.65        99.98        15.65         9.90        10.62        15.91 
TCGA-02-0339 TCGA-02-0430 TCGA-02-0440 TCGA-02-0446 TCGA-02-0456 TCGA-02-2483 
       12.39        10.55        11.34         9.27         3.35        15.32 
TCGA-06-0122 TCGA-06-0128 TCGA-06-0130 TCGA-06-0138 TCGA-06-0140 TCGA-06-0143 
        6.15        22.72        12.95        24.23         0.20        11.74 
TCGA-06-0147 TCGA-06-0149 TCGA-06-0152 TCGA-06-0158 TCGA-06-0159 TCGA-06-0162 
       17.79         8.61        12.33        10.82         9.44         3.42 
TCGA-06-0164 TCGA-06-0166 TCGA-06-0177 TCGA-06-0182 TCGA-06-0184 TCGA-06-0188 
       56.91         5.85         4.18         3.65        69.90        44.58 
TCGA-06-0190 TCGA-06-0192 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 
       10.42        38.96         7.40         5.56         0.39         7.66 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 
        7.63         0.53        15.02        24.16         0.72        19.82 
TCGA-06-0402 TCGA-06-0410 TCGA-06-0413 TCGA-06-0414 TCGA-06-0648 TCGA-06-0649 
        0.26         4.70         3.16        35.11         9.80         2.10 
TCGA-06-0745 TCGA-06-0875 TCGA-06-0881 TCGA-06-0939 TCGA-06-1084 TCGA-06-1087 
        7.86        43.46        16.57        26.76        23.93         4.04 
TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-1806 
       26.79        11.84        15.32        13.61        33.90        15.32 
TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2566 TCGA-06-2567 TCGA-06-2570 
        1.08        12.49         4.93         5.98         4.37        31.50 
TCGA-06-5408 TCGA-06-5412 TCGA-06-5414 TCGA-06-5416 TCGA-06-5856 TCGA-06-5859 
       11.74         4.54         8.98         6.71         3.75         4.57 
TCGA-06-6389 TCGA-06-6694 TCGA-06-6701 TCGA-06-A7TK TCGA-08-0245 TCGA-08-0246 
        7.79         7.36         4.96         5.39        37.84         4.18 
TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0354 TCGA-08-0357 
       25.71        12.16         9.80        29.23        17.95        37.58 
TCGA-08-0359 TCGA-08-0386 TCGA-08-0389 TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 
        3.39        18.02        15.35         0.72        12.56         4.27 
TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 TCGA-08-0520 TCGA-12-0615 
       42.15        11.08        19.59        58.68        10.75        15.35 
TCGA-12-0620 TCGA-12-0662 TCGA-12-0670 TCGA-12-0691 TCGA-12-0769 TCGA-12-0772 
       10.45        38.17        25.97        12.13        15.06        53.85 
TCGA-12-0776 TCGA-12-0819 TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 
        9.73        24.79        27.78        38.76         8.94        20.58 
TCGA-12-1088 TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 TCGA-12-1096 
      127.59        33.21        21.73        15.98        12.23         9.11 
TCGA-12-1097 TCGA-12-1099 TCGA-12-1598 TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 
       14.53         4.14        15.65         6.77        59.77        44.02 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-14-0736 TCGA-14-0740 TCGA-14-0783 
       34.92        14.53        14.93        15.12        11.97         6.21 
TCGA-14-0787 TCGA-14-0812 TCGA-14-0817 TCGA-14-0862 TCGA-14-0865 TCGA-14-0867 
        2.24         3.25         5.39         2.89        16.50         2.04 
TCGA-14-1034 TCGA-14-1037 TCGA-14-1396 TCGA-14-1451 TCGA-14-1453 TCGA-14-1454 
       15.95        19.30         1.12        23.11         1.15        30.18 
TCGA-14-1456 TCGA-14-1458 TCGA-14-1823 TCGA-14-1825 TCGA-14-3477 TCGA-15-0742 
       40.96         6.67        17.85         7.63         3.78        13.78 
TCGA-15-1444 TCGA-15-1447 TCGA-15-1449 TCGA-16-0846 TCGA-16-0849 TCGA-16-0850 
       50.53        53.19        13.28         3.91        26.07        16.37 
TCGA-16-1045 TCGA-16-1055 TCGA-16-1060 TCGA-19-1385 TCGA-19-1387 TCGA-19-1389 
       29.03        10.29         9.14        10.75         5.95         4.64 
TCGA-19-1392 TCGA-19-2621 TCGA-19-2623 TCGA-19-2625 TCGA-19-2629 TCGA-19-4065 
        3.65         1.08         7.53         4.08        24.23         7.04 
TCGA-19-5947 TCGA-19-5955 TCGA-19-A60I TCGA-26-1438 TCGA-26-1439 TCGA-26-5132 
        6.64         1.78        17.79        10.03        13.87         9.40 
TCGA-26-5133 TCGA-26-5136 TCGA-26-6173 TCGA-26-A7UX TCGA-27-1830 TCGA-27-1832 
       14.86        18.97         7.92        19.33         5.06         9.86 
TCGA-27-1834 TCGA-27-2519 TCGA-27-2521 TCGA-27-2524 TCGA-28-1750 TCGA-28-1752 
       40.54        10.39        10.39         7.59         8.35         8.48 
TCGA-28-2502 TCGA-28-2509 TCGA-28-5215 TCGA-28-5216 TCGA-28-5219 TCGA-32-1970 
        0.66         4.77        11.01        13.64        22.68        15.39 
TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 TCGA-32-1987 TCGA-32-2491 TCGA-32-2616 
       21.07         0.49         0.10        14.86        12.23         7.36 
TCGA-32-2632 TCGA-32-2634 TCGA-32-4210 TCGA-32-4213 TCGA-32-4719 TCGA-41-2571 
        8.84        22.78         3.72        19.86        10.85         0.85 
TCGA-41-2573 TCGA-41-3392 TCGA-41-3915 TCGA-41-4097 TCGA-4W-AA9S TCGA-74-6573 
        8.94         0.99        11.84         0.20         4.14         3.45 
TCGA-76-4929 TCGA-76-4934 TCGA-76-4935 TCGA-76-6192 TCGA-76-6193 TCGA-76-6285 
        3.65         2.53        10.78         3.29         2.70         8.35 
TCGA-76-6286 TCGA-76-6661 TCGA-76-6662 TCGA-81-5911 TCGA-CS-4943 TCGA-CS-6290 
       20.98         0.23         9.27        17.72        18.15        17.95 
TCGA-CS-6666 TCGA-CS-6670 TCGA-DB-5275 TCGA-DB-5277 TCGA-DB-A4XA TCGA-DB-A4XE 
        8.48         6.61        47.93        50.86        18.84        37.45 
TCGA-DB-A64X TCGA-DB-A75O TCGA-DH-5140 TCGA-DH-5142 TCGA-DH-A669 TCGA-DH-A66D 
       18.51        30.74        19.96        30.31        30.21        27.81 
TCGA-DH-A66F TCGA-DH-A7UU TCGA-DU-5847 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-6392 
       17.19         3.45        18.02         6.74        13.38       211.17 
TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-7006 TCGA-DU-7008 
       65.75         1.22        94.52       114.08        11.47       156.23 
TCGA-DU-7010 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7301 
       14.99        10.36         7.96        18.94        44.02        25.91 
TCGA-DU-8158 TCGA-DU-8165 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TS 
        5.10        19.13        15.48        14.17        14.24        15.12 
TCGA-DU-A5TU TCGA-DU-A6S3 TCGA-DU-A6S7 TCGA-DU-A76R TCGA-DU-A7T8 TCGA-DU-A7TA 
        3.65         2.70         7.23        21.30       124.50        77.88 
TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5307 TCGA-E1-5322 TCGA-E1-A7YW 
       50.14        67.46        41.13        57.93       130.78        36.82 
TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6692 
       47.77        25.48        34.36        18.77        14.93        18.44 
TCGA-FG-7641 TCGA-FG-8188 TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60L TCGA-FG-A6IZ 
       20.61        14.96        23.70        14.76        16.41        15.02 
TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A87Q TCGA-HT-7469 TCGA-HT-7470 
       22.26        28.54        10.78         5.72        11.54        40.11 
TCGA-HT-7471 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7482 TCGA-HT-7483 
        0.13        17.42         6.54        24.26       106.95       172.77 
TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7616 TCGA-HT-7688 TCGA-HT-7689 
      122.47         4.57        17.29         0.23        31.69        14.96 
TCGA-HT-7690 TCGA-HT-7692 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7873 TCGA-HT-7902 
        0.10         2.96        39.09         0.23        23.61        31.43 
TCGA-HT-8106 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A5R7 TCGA-HT-A614 TCGA-HT-A617 
        0.10        28.27        15.72        20.22         2.70        16.14 
TCGA-HT-A61B TCGA-HT-A74O TCGA-HW-7489 TCGA-HW-7491 TCGA-KT-A74X TCGA-P5-A5EZ 
       17.52         0.10         8.32        40.18        14.40         2.30 
TCGA-P5-A5F4 TCGA-P5-A72W TCGA-QH-A65S TCGA-QH-A65Z TCGA-QH-A6CV TCGA-QH-A6CW 
        0.76        10.42         2.53        14.04        14.53        13.61 
TCGA-QH-A6CY TCGA-QH-A6X8 TCGA-RY-A83Z TCGA-RY-A847 TCGA-S9-A6TV TCGA-S9-A6UA 
        2.20        16.73         9.90        30.67        18.77         5.85 
TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J3 
        7.92        22.32        23.51         7.13        20.02        17.03 
TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A84F TCGA-TM-A84I TCGA-TM-A84L 
       18.71        11.97        49.45        59.05        28.08        40.83 
TCGA-TM-A84R TCGA-TM-A84S TCGA-TQ-A7RH TCGA-TQ-A7RW TCGA-VM-A8CD TCGA-WY-A85E 
       18.61        14.93        15.98        26.99         7.89        20.81 

$`DEL PEAK 32(13Q14.2) WILD-TYPE`
TCGA-02-0003 TCGA-02-0009 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 
        4.73        10.59        82.59        20.61        87.06        77.65 
TCGA-02-0025 TCGA-02-0027 TCGA-02-0028 TCGA-02-0037 TCGA-02-0038 TCGA-02-0043 
       42.74        12.16        90.58         3.62        10.72        18.31 
TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 TCGA-02-0057 TCGA-02-0058 TCGA-02-0060 
        6.87        14.73         3.22        19.86         8.35         6.02 
TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 
       25.05         5.49        10.19        89.72        22.72        12.62 
TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0102 TCGA-02-0107 
       51.32         8.81        57.76        16.96        27.02        17.65 
TCGA-02-0111 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 
       23.18        48.95        16.54        16.93        17.72        10.75 
TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 
       14.47         3.98        13.87        14.20        15.95        12.23 
TCGA-02-0324 TCGA-02-0326 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 
        7.73         7.33        25.71         4.37        25.12        10.59 
TCGA-02-0422 TCGA-02-0432 TCGA-02-0451 TCGA-02-2466 TCGA-02-2470 TCGA-02-2485 
       14.50        47.11        16.21        16.80        12.92        15.45 
TCGA-02-2486 TCGA-06-0119 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 
       20.32         2.70        20.38        47.61         6.94         3.98 
TCGA-06-0129 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0139 TCGA-06-0141 
       33.67        25.35        14.30        26.70        11.90        10.29 
TCGA-06-0142 TCGA-06-0145 TCGA-06-0146 TCGA-06-0148 TCGA-06-0150 TCGA-06-0151 
        2.20         2.33        20.09        10.09        19.46        46.59 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0160 TCGA-06-0165 TCGA-06-0168 
       13.94        10.45         3.19        11.80        10.65        19.66 
TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 
        3.29        13.12         4.47         3.22         4.04        91.00 
TCGA-06-0178 TCGA-06-0179 TCGA-06-0185 TCGA-06-0187 TCGA-06-0189 TCGA-06-0194 
       88.14        20.25        73.84        27.22        15.42         4.67 
TCGA-06-0208 TCGA-06-0210 TCGA-06-0211 TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 
        8.42         7.40        11.84        13.64        13.32        20.42 
TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0409 TCGA-06-0412 TCGA-06-0644 
       48.69        10.82         9.01        72.36         9.57        12.62 
TCGA-06-0645 TCGA-06-0646 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        5.75         5.75        23.57        14.20        26.40        46.88 
TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 
        2.70         2.70         0.92        46.19         5.65         7.17 
TCGA-06-0879 TCGA-06-0882 TCGA-06-1086 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 
       40.41        20.78         6.84        17.65        12.56        30.64 
TCGA-06-2564 TCGA-06-2565 TCGA-06-2569 TCGA-06-5410 TCGA-06-5411 TCGA-06-5413 
        5.95        16.64         0.43         3.55         8.35         8.81 
TCGA-06-5415 TCGA-06-5418 TCGA-06-5858 TCGA-06-6388 TCGA-06-6390 TCGA-06-6391 
        8.55         2.73         6.15         5.23         5.39         1.48 
TCGA-06-6693 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
      120.56         8.32        12.85         4.77         1.55         4.77 
TCGA-06-A5U0 TCGA-06-A5U1 TCGA-06-A6S0 TCGA-06-A6S1 TCGA-06-A7TL TCGA-08-0244 
        4.70         1.87         3.12         2.56         5.42        22.68 
TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 
      115.86         1.74         8.42        65.33         1.28         8.42 
TCGA-08-0355 TCGA-08-0356 TCGA-08-0358 TCGA-08-0375 TCGA-08-0380 TCGA-08-0390 
       24.56        31.10        22.29        12.23        14.93        13.97 
TCGA-08-0518 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 
       19.33         4.80         7.27        15.98        18.41         7.56 
TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 
       14.73        12.99        34.92         7.59        94.78         0.10 
TCGA-12-0688 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0773 TCGA-12-0775 
       26.66         3.65        20.38        28.41        43.23         7.63 
TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 
       14.93        14.86        91.76        18.48        10.62        23.51 
TCGA-12-1089 TCGA-12-1090 TCGA-12-1095 TCGA-12-1098 TCGA-12-1599 TCGA-12-1600 
        5.82         7.59        15.85         3.98        25.68        14.73 
TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-5299 TCGA-12-5301 
       26.93        15.22        10.95        12.69         3.22         2.04 
TCGA-14-0781 TCGA-14-0786 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-0866 
        0.95        23.05        11.24        13.78         1.35        26.33 
TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 
       28.93         0.79         1.38         3.75        32.05        58.78 
TCGA-14-1452 TCGA-14-1455 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 
        7.10         0.92        12.43         0.99         1.97        17.79 
TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-4157 TCGA-15-1446 
        5.88         7.17        17.49         7.96         3.42        19.10 
TCGA-16-0848 TCGA-16-0861 TCGA-16-1047 TCGA-16-1056 TCGA-16-1062 TCGA-16-1063 
       17.59         4.31         4.57        14.01        21.24        13.97 
TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 
        6.41        11.77        21.90         8.61         0.66        14.27 
TCGA-19-0964 TCGA-19-1386 TCGA-19-1388 TCGA-19-1390 TCGA-19-1786 TCGA-19-1787 
        3.39         9.07        12.95        25.38         7.17        12.66 
TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2624 TCGA-19-2631 
        3.25         0.13         9.67         4.87         0.16         7.00 
TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5956 
       17.19         8.02        18.90         4.73        12.10        22.49 
TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-19-A6J4 TCGA-19-A6J5 TCGA-26-1440 
       14.07        16.80        14.96         3.98        28.54         9.73 
TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5134 TCGA-26-5135 TCGA-26-5139 
       31.33         7.13         9.37         5.49         8.88         1.58 
TCGA-26-6174 TCGA-27-1831 TCGA-27-1833 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 
        2.33        16.60        24.23        21.30        30.05        14.04 
TCGA-27-1838 TCGA-27-2518 TCGA-27-2523 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 
       11.51        24.76        16.08         2.86        14.40        15.78 
TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1751 TCGA-28-1753 TCGA-28-1755 
        0.20         2.53         9.21         7.63         1.22         1.55 
TCGA-28-1756 TCGA-28-1757 TCGA-28-2506 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 
        2.83         0.13         6.74         7.30         5.26        14.93 
TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 
       11.28        17.88        14.53        11.77        31.27        23.44 
TCGA-28-5218 TCGA-28-5220 TCGA-28-6450 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 
        5.16        12.76         5.42        15.85        19.50         1.18 
TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 
        4.67        12.69        16.93        20.78        15.02        15.95 
TCGA-32-2638 TCGA-32-4208 TCGA-32-4211 TCGA-32-5222 TCGA-41-2572 TCGA-41-2575 
       25.18        21.14        12.59        19.23        13.35         9.53 
TCGA-41-3393 TCGA-41-5651 TCGA-41-6646 TCGA-4W-AA9T TCGA-74-6575 TCGA-74-6577 
        4.44        15.12        12.46        14.76        20.91         4.34 
TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 
       14.33         8.22         7.50         4.80         4.54         3.09 
TCGA-76-4931 TCGA-76-6191 TCGA-76-6280 TCGA-76-6282 TCGA-76-6656 TCGA-76-6657 
        9.17        16.70        11.38        17.06         4.83         5.03 
TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-87-5896 TCGA-OX-A56R TCGA-RR-A6KA 
        7.73         7.79         1.61        26.30         5.92         6.28 
TCGA-RR-A6KC TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4944 TCGA-CS-5390 
       20.55         4.70         7.69        43.89        10.62        64.64 
TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 
       40.18         0.10        21.01         9.96         6.38        17.69 
TCGA-CS-6188 TCGA-CS-6665 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-DB-5270 
       23.84        12.43         7.56         8.02         7.40       122.73 
TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5276 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 
       81.96        75.25        72.92        50.17        44.52        36.56 
TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XF 
       78.28        46.42        30.21        46.72        39.78        33.57 
TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q 
       72.95        31.63        24.20        25.48        30.12         5.98 
TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A75K 
       31.40        27.45        27.81        29.23        14.40        12.10 
TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75P TCGA-DH-5141 TCGA-DH-5143 TCGA-DH-5144 
       11.24        17.88        16.18        31.82        14.40         8.02 
TCGA-DH-A66B TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UV 
       42.05        17.19        54.25        13.12        13.38        18.61 
TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 
       14.56        17.46         8.45         6.81       182.33        18.94 
TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 
       17.49        15.16        52.11        22.42        49.02        75.16 
TCGA-DU-6397 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 
       46.06        87.45         7.04        11.64       133.74        19.89 
TCGA-DU-6406 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7007 TCGA-DU-7009 TCGA-DU-7011 
       16.83         7.96         7.73        62.96       138.28       105.21 
TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7014 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 
        6.54         8.84       117.40        90.77        30.67        26.30 
TCGA-DU-7294 TCGA-DU-7300 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 
       94.32        62.01        60.30        23.31        41.98         2.76 
TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8166 TCGA-DU-A5TR 
       23.74        14.60        20.68        21.40        16.96        12.59 
TCGA-DU-A5TT TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S6 TCGA-DU-A6S8 
        4.96         5.65        12.20         8.65        77.98         5.98 
TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A7T6 TCGA-DU-A7TB TCGA-DU-A7TC 
       11.41        26.76         7.13        17.98        42.31        23.51 
TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5305 TCGA-E1-5311 TCGA-E1-5318 
        7.50        44.42         0.56        79.99       134.27        78.21 
TCGA-E1-5319 TCGA-E1-A7YO TCGA-E1-A7YV TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 
       95.57        75.02        32.45        32.35        14.33         0.23 
TCGA-F6-A8O4 TCGA-FG-5965 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-7634 TCGA-FG-7636 
        0.20        36.82        24.99        23.97        15.35        17.88 
TCGA-FG-7638 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 
       22.55        20.09        12.95        13.68        14.24        16.01 
TCGA-FG-8187 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW 
       20.09        22.52        32.61        38.27        10.72        18.38 
TCGA-FG-A4MX TCGA-FG-A60K TCGA-FG-A6J1 TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 
       18.71        17.82        16.44        36.66        48.69        20.45 
TCGA-FG-A87N TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7472 TCGA-HT-7473 
       13.58        27.52         0.10         6.67         0.03        16.54 
TCGA-HT-7474 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7485 
        3.75         6.38        40.34        75.19        95.93         4.01 
TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 
        5.03        29.85        23.18         3.16        22.06        45.99 
TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 
       56.09        57.60        14.27         0.16        16.24         0.76 
TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7691 TCGA-HT-7693 
       44.68         6.05        42.74         0.10         0.10        17.52 
TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7858 TCGA-HT-7860 
        6.90        14.53        39.48        19.23        50.63         0.49 
TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 
       37.15         0.33         0.13         3.68         5.33        35.47 
TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 
        3.72        11.28         1.64        16.24         9.40        63.55 
TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8107 
        0.10        37.87        33.01        12.23         6.25         0.46 
TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 
        2.50         5.56        13.78         0.23        29.59        34.19 
TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB 
        0.23        26.04         0.13         0.07        27.35         0.10 
TCGA-HT-A5RC TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61C 
        5.33        16.93         1.81        16.83        21.40        17.65 
TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HW-7486 TCGA-HW-7487 
        2.43        10.52        15.35        11.05        29.92        19.89 
TCGA-HW-7490 TCGA-HW-7493 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 
       19.23        35.90         4.31        21.70        21.60        19.59 
TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 
       17.82        20.35        12.76        20.81        20.71        19.00 
TCGA-IK-8125 TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY 
       42.77        14.40         0.23         6.71         1.64         2.37 
TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72X 
        4.11         5.88         7.63         1.28         0.16        13.25 
TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-QH-A65R TCGA-QH-A65V 
       11.64         0.20         9.01        13.61        15.16        12.62 
TCGA-QH-A65X TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CX TCGA-QH-A6CZ TCGA-QH-A6X3 
       15.85        19.33        14.83        12.23         9.17        10.29 
TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X 
       14.53        16.34         1.91        16.50         5.03        11.08 
TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X 
       12.99        88.83        94.03        32.65        59.38        30.87 
TCGA-RY-A83Y TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-S9-A6TS TCGA-S9-A6TU 
        5.46        28.08         2.07        19.59        62.17        87.12 
TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 
       37.84        34.49        31.33        28.70        22.95        17.62 
TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UB 
       23.64        32.61        16.08        98.24        95.93       106.39 
TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL 
       69.50        72.59        80.12        32.45        84.99        31.10 
TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ 
       19.86        15.91        18.61        15.16        14.07        36.13 
TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ 
        8.19         2.04        15.06        13.12        28.37        13.02 
TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 
      169.84        10.39        99.06        30.05        98.63        31.59 
TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C 
       48.33        49.32        34.78        48.39        24.92        16.18 
TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84J TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q 
       40.64        30.44        24.16        24.79        33.24        25.38 
TCGA-TM-A84T TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CE 
       23.80        43.04        30.08        13.51         0.10        35.93 
TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 
       23.47        37.05        16.01        23.21         8.05        51.06 
TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C 
       13.32        43.96        39.88        43.40        45.80        46.88 
TCGA-WY-A85D 
       37.71 

  DEL PEAK 32(13Q14.2) MUTATED DEL PEAK 32(13Q14.2) WILD-TYPE 
                          0.10                           0.03 
  DEL PEAK 32(13Q14.2) MUTATED DEL PEAK 32(13Q14.2) WILD-TYPE 
                        211.17                         182.33 
  DEL PEAK 32(13Q14.2) MUTATED DEL PEAK 32(13Q14.2) WILD-TYPE 
                        14.205                         14.960 
[1] "0.1 - 211.2 (14.2)" "0.0 - 182.3 (15.0)"
[1] "hr=" "1.4"
D64V2, continuous
D64V3, binary
                                cls
clus                               0   1
  DEL PEAK 32(13Q14.2) MUTATED   238 129
  DEL PEAK 32(13Q14.2) WILD-TYPE 332 343
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 32(13Q14.2) MUTATED    238  129
  DEL PEAK 32(13Q14.2) WILD-TYPE  332  343
                        clus
vv                       DEL PEAK 32(13Q14.2) MUTATED
  BRAIN                                           238
  CENTRAL NERVOUS SYSTEM                          129
                        clus
vv                       DEL PEAK 32(13Q14.2) WILD-TYPE
  BRAIN                                             332
  CENTRAL NERVOUS SYSTEM                            343
[1] 2 2
[1] FALSE
D64V4, binary
                                cls
clus                               0   1
  DEL PEAK 32(13Q14.2) MUTATED   139 228
  DEL PEAK 32(13Q14.2) WILD-TYPE 291 384
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 32(13Q14.2) MUTATED    139  228
  DEL PEAK 32(13Q14.2) WILD-TYPE  291  384
        clus
vv       DEL PEAK 32(13Q14.2) MUTATED DEL PEAK 32(13Q14.2) WILD-TYPE
  FEMALE                          139                            291
  MALE                            228                            384
[1] 2 2
[1] FALSE
D64V5, continuous
                                vv
clus                             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  DEL PEAK 32(13Q14.2) MUTATED            56                             8
  DEL PEAK 32(13Q14.2) WILD-TYPE         120                            19
                                vv
clus                             OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  DEL PEAK 32(13Q14.2) MUTATED                 33                40
  DEL PEAK 32(13Q14.2) WILD-TYPE               85               138
                                vv
clus                             TREATED PRIMARY GBM
  DEL PEAK 32(13Q14.2) MUTATED                     6
  DEL PEAK 32(13Q14.2) WILD-TYPE                  12
                                vv
clus                             UNTREATED PRIMARY (DE NOVO) GBM
  DEL PEAK 32(13Q14.2) MUTATED                               224
  DEL PEAK 32(13Q14.2) WILD-TYPE                             301
D64V6, multiclass
                                 clus
vv                                DEL PEAK 32(13Q14.2) MUTATED
  ASTROCYTOMA                                               56
  GLIOBLASTOMA MULTIFORME (GBM)                              8
  OLIGOASTROCYTOMA                                          33
  OLIGODENDROGLIOMA                                         40
  TREATED PRIMARY GBM                                        6
  UNTREATED PRIMARY (DE NOVO) GBM                          224
                                 clus
vv                                DEL PEAK 32(13Q14.2) WILD-TYPE
  ASTROCYTOMA                                                120
  GLIOBLASTOMA MULTIFORME (GBM)                               19
  OLIGOASTROCYTOMA                                            85
  OLIGODENDROGLIOMA                                          138
  TREATED PRIMARY GBM                                         12
  UNTREATED PRIMARY (DE NOVO) GBM                            301
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D64V7, binary
                                cls
clus                               0   1
  DEL PEAK 32(13Q14.2) MUTATED   189 178
  DEL PEAK 32(13Q14.2) WILD-TYPE 285 390
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 32(13Q14.2) MUTATED    189  178
  DEL PEAK 32(13Q14.2) WILD-TYPE  285  390
     clus
vv    DEL PEAK 32(13Q14.2) MUTATED DEL PEAK 32(13Q14.2) WILD-TYPE
  NO                           189                            285
  YES                          178                            390
[1] 2 2
[1] FALSE
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 32(13Q14.2) MUTATED                                  1     6
  DEL PEAK 32(13Q14.2) WILD-TYPE                                0    15
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 32(13Q14.2) MUTATED                          21   331
  DEL PEAK 32(13Q14.2) WILD-TYPE                        43   591
D64V8, multiclass
                                  clus
vv                                 DEL PEAK 32(13Q14.2) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            1
  ASIAN                                                       6
  BLACK OR AFRICAN AMERICAN                                  21
  WHITE                                                     331
                                  clus
vv                                 DEL PEAK 32(13Q14.2) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              0
  ASIAN                                                        15
  BLACK OR AFRICAN AMERICAN                                    43
  WHITE                                                       591
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D64V9, binary
                                cls
clus                               0   1
  DEL PEAK 32(13Q14.2) MUTATED    10 319
  DEL PEAK 32(13Q14.2) WILD-TYPE  20 572
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 32(13Q14.2) MUTATED     10  319
  DEL PEAK 32(13Q14.2) WILD-TYPE   20  572
                        clus
vv                       DEL PEAK 32(13Q14.2) MUTATED
  HISPANIC OR LATINO                               10
  NOT HISPANIC OR LATINO                          319
                        clus
vv                       DEL PEAK 32(13Q14.2) WILD-TYPE
  HISPANIC OR LATINO                                 20
  NOT HISPANIC OR LATINO                            572
[1] 2 2
[1] FALSE

Clustering(65) Variable = DEL PEAK 33(13Q22.1) MUTATION ANALYSIS
D65V1, survival
                                sevent
clus2                              0   1
  DEL PEAK 33(13Q22.1) MUTATED   131 219
  DEL PEAK 33(13Q22.1) WILD-TYPE 349 340
  DEL PEAK 33(13Q22.1) MUTATED DEL PEAK 33(13Q22.1) WILD-TYPE 
                           350                            689 
  DEL PEAK 33(13Q22.1) MUTATED DEL PEAK 33(13Q22.1) WILD-TYPE 
                           219                            340 
$`DEL PEAK 33(13Q22.1) MUTATED`
TCGA-02-0001 TCGA-02-0006 TCGA-02-0007 TCGA-02-0010 TCGA-02-0011 TCGA-02-0023 
       11.77        18.35        23.18        35.41        20.71        20.12 
TCGA-02-0026 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0039 TCGA-02-0051 
       24.59        90.58         2.83        14.14        10.52        15.09 
TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0059 TCGA-02-0064 TCGA-02-0068 
       12.59         6.54         2.50         9.57        19.73        26.43 
TCGA-02-0069 TCGA-02-0075 TCGA-02-0079 TCGA-02-0099 TCGA-02-0104 TCGA-02-0106 
       28.70        20.84        27.25         3.48        65.00        11.67 
TCGA-02-0113 TCGA-02-0115 TCGA-02-0258 TCGA-02-0321 TCGA-02-0325 TCGA-02-0330 
       92.65        15.65        16.54         9.90        10.62        15.91 
TCGA-02-0339 TCGA-02-0440 TCGA-02-0446 TCGA-02-0456 TCGA-02-2483 TCGA-06-0122 
       12.39        11.34         9.27         3.35        15.32         6.15 
TCGA-06-0124 TCGA-06-0125 TCGA-06-0128 TCGA-06-0130 TCGA-06-0138 TCGA-06-0139 
       20.38        47.61        22.72        12.95        24.23        11.90 
TCGA-06-0140 TCGA-06-0143 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 
        0.20        11.74        20.09        17.79        10.09         8.61 
TCGA-06-0152 TCGA-06-0158 TCGA-06-0159 TCGA-06-0162 TCGA-06-0164 TCGA-06-0166 
       12.33        10.82         9.44         3.42        56.91         5.85 
TCGA-06-0177 TCGA-06-0182 TCGA-06-0184 TCGA-06-0188 TCGA-06-0192 TCGA-06-0195 
        4.18         3.65        69.90        44.58        38.96         7.40 
TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 
        5.56         0.39         7.66         7.63         0.53        15.02 
TCGA-06-0219 TCGA-06-0402 TCGA-06-0410 TCGA-06-0414 TCGA-06-0648 TCGA-06-0649 
        0.72         0.26         4.70        35.11         9.80         2.10 
TCGA-06-0745 TCGA-06-0875 TCGA-06-0881 TCGA-06-0939 TCGA-06-1084 TCGA-06-1087 
        7.86        43.46        16.57        26.76        23.93         4.04 
TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-1806 
       26.79        11.84        15.32        13.61        33.90        15.32 
TCGA-06-2557 TCGA-06-2558 TCGA-06-2567 TCGA-06-5408 TCGA-06-5412 TCGA-06-5414 
        1.08        12.49         4.37        11.74         4.54         8.98 
TCGA-06-5416 TCGA-06-5856 TCGA-06-5859 TCGA-06-6389 TCGA-06-6694 TCGA-06-6701 
        6.71         3.75         4.57         7.79         7.36         4.96 
TCGA-06-A6S1 TCGA-06-A7TK TCGA-08-0245 TCGA-08-0246 TCGA-08-0347 TCGA-08-0349 
        2.56         5.39        37.84         4.18        25.71         9.80 
TCGA-08-0354 TCGA-08-0357 TCGA-08-0359 TCGA-08-0386 TCGA-08-0389 TCGA-08-0392 
       17.95        37.58         3.39        18.02        15.35         0.72 
TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 TCGA-08-0516 TCGA-08-0517 TCGA-08-0520 
       12.56         4.27        42.15        19.59        58.68        10.75 
TCGA-12-0615 TCGA-12-0619 TCGA-12-0620 TCGA-12-0662 TCGA-12-0670 TCGA-12-0691 
       15.35        34.92        10.45        38.17        25.97        12.13 
TCGA-12-0769 TCGA-12-0772 TCGA-12-0776 TCGA-12-0819 TCGA-12-0826 TCGA-12-0827 
       15.06        53.85         9.73        24.79        27.78        38.76 
TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 
        8.94        20.58       127.59        33.21        21.73        15.98 
TCGA-12-1094 TCGA-12-1096 TCGA-12-1097 TCGA-12-1099 TCGA-12-1598 TCGA-12-1602 
       12.23         9.11        14.53         4.14        15.65         6.77 
TCGA-12-3644 TCGA-12-3646 TCGA-12-5295 TCGA-14-0736 TCGA-14-0740 TCGA-14-0783 
       59.77        44.02        14.93        15.12        11.97         6.21 
TCGA-14-0787 TCGA-14-0790 TCGA-14-0812 TCGA-14-0817 TCGA-14-0862 TCGA-14-0865 
        2.24        13.78         3.25         5.39         2.89        16.50 
TCGA-14-0867 TCGA-14-1034 TCGA-14-1037 TCGA-14-1396 TCGA-14-1451 TCGA-14-1453 
        2.04        15.95        19.30         1.12        23.11         1.15 
TCGA-14-1454 TCGA-14-1456 TCGA-14-1458 TCGA-14-1823 TCGA-14-1825 TCGA-14-3477 
       30.18        40.96         6.67        17.85         7.63         3.78 
TCGA-15-0742 TCGA-15-1447 TCGA-15-1449 TCGA-16-0846 TCGA-16-0849 TCGA-16-0850 
       13.78        53.19        13.28         3.91        26.07        16.37 
TCGA-16-1045 TCGA-16-1055 TCGA-16-1060 TCGA-16-1062 TCGA-19-1385 TCGA-19-1387 
       29.03        10.29         9.14        21.24        10.75         5.95 
TCGA-19-1389 TCGA-19-1392 TCGA-19-2621 TCGA-19-2623 TCGA-19-2625 TCGA-19-2629 
        4.64         3.65         1.08         7.53         4.08        24.23 
TCGA-19-4065 TCGA-19-5947 TCGA-19-5955 TCGA-19-A60I TCGA-26-1439 TCGA-26-5133 
        7.04         6.64         1.78        17.79        13.87        14.86 
TCGA-26-5136 TCGA-26-6173 TCGA-26-A7UX TCGA-27-1830 TCGA-27-1832 TCGA-27-1834 
       18.97         7.92        19.33         5.06         9.86        40.54 
TCGA-27-2519 TCGA-27-2521 TCGA-28-1746 TCGA-28-1750 TCGA-28-1752 TCGA-28-2502 
       10.39        10.39         0.20         8.35         8.48         0.66 
TCGA-28-2509 TCGA-28-5207 TCGA-28-5215 TCGA-28-5216 TCGA-28-5219 TCGA-28-5220 
        4.77        11.28        11.01        13.64        22.68        12.76 
TCGA-32-1970 TCGA-32-1976 TCGA-32-1987 TCGA-32-2491 TCGA-32-2616 TCGA-32-2634 
       15.39         0.49        14.86        12.23         7.36        22.78 
TCGA-32-4210 TCGA-32-4213 TCGA-32-4719 TCGA-41-2573 TCGA-41-3392 TCGA-41-3915 
        3.72        19.86        10.85         8.94         0.99        11.84 
TCGA-41-4097 TCGA-4W-AA9S TCGA-76-4929 TCGA-76-4934 TCGA-76-4935 TCGA-76-6193 
        0.20         4.14         3.65         2.53        10.78         2.70 
TCGA-76-6285 TCGA-76-6286 TCGA-76-6661 TCGA-81-5911 TCGA-CS-4943 TCGA-CS-6290 
        8.35        20.98         0.23        17.72        18.15        17.95 
TCGA-CS-6666 TCGA-CS-6670 TCGA-DB-5275 TCGA-DB-5277 TCGA-DB-A4XA TCGA-DB-A4XE 
        8.48         6.61        47.93        50.86        18.84        37.45 
TCGA-DB-A64X TCGA-DB-A75O TCGA-DH-5140 TCGA-DH-5142 TCGA-DH-A669 TCGA-DH-A66D 
       18.51        30.74        19.96        30.31        30.21        27.81 
TCGA-DH-A66F TCGA-DH-A7UU TCGA-DU-5847 TCGA-DU-5853 TCGA-DU-6392 TCGA-DU-6399 
       17.19         3.45        18.02        13.38       211.17        65.75 
TCGA-DU-6400 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-7006 TCGA-DU-7008 TCGA-DU-7010 
        1.22        94.52       114.08        11.47       156.23        14.99 
TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7301 TCGA-DU-8158 
       10.36         7.96        18.94        44.02        25.91         5.10 
TCGA-DU-8165 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TS TCGA-DU-A5TU TCGA-DU-A5TY 
       19.13        15.48        14.17        15.12         3.65        12.20 
TCGA-DU-A6S3 TCGA-DU-A6S7 TCGA-DU-A76R TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-E1-5303 
        2.70         7.23        21.30       124.50        77.88        67.46 
TCGA-E1-5304 TCGA-E1-5307 TCGA-E1-5322 TCGA-E1-A7YW TCGA-FG-5962 TCGA-FG-5963 
       41.13        57.93       130.78        36.82        47.77        25.48 
TCGA-FG-5964 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6692 TCGA-FG-7641 TCGA-FG-8188 
       34.36        18.77        14.93        18.44        20.61        14.96 
TCGA-FG-A4MT TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J3 
       38.27        23.70        14.76        16.41        15.02        22.26 
TCGA-FG-A70Z TCGA-FG-A87Q TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7475 
       10.78         5.72        11.54        40.11         0.13        17.42 
TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7482 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 
        6.54        24.26       106.95       122.47         4.57        17.29 
TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7692 
       57.60         0.23        31.69        14.96         0.10         2.96 
TCGA-HT-7694 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7873 TCGA-HT-7882 TCGA-HT-7902 
        6.90        39.09         0.23        23.61         3.72        31.43 
TCGA-HT-8106 TCGA-HT-8564 TCGA-HT-A5R7 TCGA-HT-A614 TCGA-HT-A617 TCGA-HT-A61B 
        0.10        15.72        20.22         2.70        16.14        17.52 
TCGA-HT-A74O TCGA-HW-7489 TCGA-HW-7491 TCGA-KT-A74X TCGA-P5-A5EZ TCGA-P5-A5F4 
        0.10         8.32        40.18        14.40         2.30         0.76 
TCGA-P5-A72W TCGA-QH-A65S TCGA-QH-A65Z TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CY 
       10.42         2.53        14.04        14.53        13.61         2.20 
TCGA-QH-A6X8 TCGA-RY-A83Z TCGA-RY-A847 TCGA-S9-A6UA TCGA-S9-A7IS TCGA-S9-A7IX 
       16.73         9.90        30.67         5.85         7.92        22.32 
TCGA-S9-A7IY TCGA-S9-A7J0 TCGA-S9-A7J3 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 
       23.51        20.02        17.03        18.71        11.97        49.45 
TCGA-TM-A84F TCGA-TM-A84I TCGA-TM-A84L TCGA-TM-A84R TCGA-TM-A84S TCGA-TQ-A7RH 
       59.05        28.08        40.83        18.61        14.93        15.98 
TCGA-VM-A8CD TCGA-WY-A85E 
        7.89        20.81 

$`DEL PEAK 33(13Q22.1) WILD-TYPE`
TCGA-02-0003 TCGA-02-0009 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 
        4.73        10.59        82.59        20.61        87.06        77.65 
TCGA-02-0024 TCGA-02-0025 TCGA-02-0027 TCGA-02-0037 TCGA-02-0038 TCGA-02-0043 
       53.10        42.74        12.16         3.62        10.72        18.31 
TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 TCGA-02-0057 TCGA-02-0058 TCGA-02-0060 
        6.87        14.73         3.22        19.86         8.35         6.02 
TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 
       25.05         5.49        10.19        89.72        22.72        12.62 
TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0102 TCGA-02-0107 
       51.32         8.81        57.76        16.96        27.02        17.65 
TCGA-02-0111 TCGA-02-0114 TCGA-02-0116 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 
       23.18        99.98        48.95        16.93        17.72        10.75 
TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 
       14.47         3.98        13.87        14.20        15.95        12.23 
TCGA-02-0324 TCGA-02-0326 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 
        7.73         7.33        25.71         4.37        25.12        10.59 
TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0451 TCGA-02-2466 TCGA-02-2470 
       14.50        10.55        47.11        16.21        16.80        12.92 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0126 TCGA-06-0127 TCGA-06-0129 
       15.45        20.32         2.70         6.94         3.98        33.67 
TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 
       25.35        14.30        26.70        10.29         2.20         2.33 
TCGA-06-0150 TCGA-06-0151 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0160 
       19.46        46.59        13.94        10.45         3.19        11.80 
TCGA-06-0165 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 
       10.65        19.66         3.29        13.12         4.47         3.22 
TCGA-06-0175 TCGA-06-0176 TCGA-06-0178 TCGA-06-0179 TCGA-06-0185 TCGA-06-0187 
        4.04        91.00        88.14        20.25        73.84        27.22 
TCGA-06-0189 TCGA-06-0190 TCGA-06-0194 TCGA-06-0208 TCGA-06-0210 TCGA-06-0211 
       15.42        10.42         4.67         8.42         7.40        11.84 
TCGA-06-0216 TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 
       24.16        19.82        13.64        13.32        20.42        48.69 
TCGA-06-0394 TCGA-06-0397 TCGA-06-0409 TCGA-06-0412 TCGA-06-0413 TCGA-06-0644 
       10.82         9.01        72.36         9.57         3.16        12.62 
TCGA-06-0645 TCGA-06-0646 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        5.75         5.75        23.57        14.20        26.40        46.88 
TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 
        2.70         2.70         0.92        46.19         5.65         7.17 
TCGA-06-0879 TCGA-06-0882 TCGA-06-1086 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 
       40.41        20.78         6.84         4.93        17.65        12.56 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2569 TCGA-06-2570 
       30.64         5.95        16.64         5.98         0.43        31.50 
TCGA-06-5410 TCGA-06-5411 TCGA-06-5413 TCGA-06-5415 TCGA-06-5418 TCGA-06-5858 
        3.55         8.35         8.81         8.55         2.73         6.15 
TCGA-06-6388 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6695 TCGA-06-6697 
        5.23         5.39         1.48       120.56         8.32        12.85 
TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-A5U0 TCGA-06-A5U1 TCGA-06-A6S0 
        4.77         1.55         4.77         4.70         1.87         3.12 
TCGA-06-A7TL TCGA-08-0244 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0348 
        5.42        22.68       115.86         1.74         8.42        12.16 
TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 TCGA-08-0355 TCGA-08-0356 
       29.23        65.33         1.28         8.42        24.56        31.10 
TCGA-08-0358 TCGA-08-0375 TCGA-08-0380 TCGA-08-0390 TCGA-08-0514 TCGA-08-0518 
       22.29        12.23        14.93        13.97        11.08        19.33 
TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0616 
        4.80         7.27        15.98        18.41         7.56        14.73 
TCGA-12-0618 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0688 TCGA-12-0692 
       12.99         7.59        94.78         0.10        26.66         3.65 
TCGA-12-0703 TCGA-12-0707 TCGA-12-0773 TCGA-12-0775 TCGA-12-0778 TCGA-12-0780 
       20.38        28.41        43.23         7.63        14.93        14.86 
TCGA-12-0818 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-1089 TCGA-12-1090 
       91.76        18.48        10.62        23.51         5.82         7.59 
TCGA-12-1095 TCGA-12-1098 TCGA-12-1599 TCGA-12-1600 TCGA-12-3648 TCGA-12-3649 
       15.85         3.98        25.68        14.73        26.93        15.22 
TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 TCGA-12-5299 TCGA-12-5301 
       10.95        12.69        34.92        14.53         3.22         2.04 
TCGA-14-0781 TCGA-14-0786 TCGA-14-0789 TCGA-14-0813 TCGA-14-0866 TCGA-14-0871 
        0.95        23.05        11.24         1.35        26.33        28.93 
TCGA-14-1043 TCGA-14-1395 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1452 
        0.79         1.38         3.75        32.05        58.78         7.10 
TCGA-14-1455 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 TCGA-14-1827 
        0.92        12.43         0.99         1.97        17.79         5.88 
TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-4157 TCGA-15-1444 TCGA-15-1446 
        7.17        17.49         7.96         3.42        50.53        19.10 
TCGA-16-0848 TCGA-16-0861 TCGA-16-1047 TCGA-16-1056 TCGA-16-1063 TCGA-16-1460 
       17.59         4.31         4.57        14.01        13.97         6.41 
TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 
       11.77        21.90         8.61         0.66        14.27         3.39 
TCGA-19-1386 TCGA-19-1388 TCGA-19-1390 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 
        9.07        12.95        25.38         7.17        12.66         3.25 
TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2624 TCGA-19-2631 TCGA-19-5950 
        0.13         9.67         4.87         0.16         7.00        17.19 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5956 TCGA-19-5958 
        8.02        18.90         4.73        12.10        22.49        14.07 
TCGA-19-5959 TCGA-19-5960 TCGA-19-A6J4 TCGA-19-A6J5 TCGA-26-1438 TCGA-26-1440 
       16.80        14.96         3.98        28.54        10.03         9.73 
TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5134 TCGA-26-5135 
       31.33         7.13         9.37         9.40         5.49         8.88 
TCGA-26-5139 TCGA-26-6174 TCGA-27-1831 TCGA-27-1833 TCGA-27-1835 TCGA-27-1836 
        1.58         2.33        16.60        24.23        21.30        30.05 
TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 
       14.04        11.51        24.76        16.08         7.59         2.86 
TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1749 TCGA-28-1751 TCGA-28-1753 
       14.40        15.78         2.53         9.21         7.63         1.22 
TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2506 TCGA-28-2513 TCGA-28-2514 
        1.55         2.83         0.13         6.74         7.30         5.26 
TCGA-28-5204 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 
       14.93        17.88        14.53        11.77        31.27        23.44 
TCGA-28-5218 TCGA-28-6450 TCGA-32-1973 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 
        5.16         5.42        21.07         0.10        15.85        19.50 
TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 TCGA-32-2494 TCGA-32-2495 
        1.18         4.67        12.69        16.93        20.78        15.02 
TCGA-32-2615 TCGA-32-2632 TCGA-32-2638 TCGA-32-4208 TCGA-32-4211 TCGA-32-5222 
       15.95         8.84        25.18        21.14        12.59        19.23 
TCGA-41-2571 TCGA-41-2572 TCGA-41-2575 TCGA-41-3393 TCGA-41-5651 TCGA-41-6646 
        0.85        13.35         9.53         4.44        15.12        12.46 
TCGA-4W-AA9T TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 
       14.76         3.45        20.91         4.34        14.33         8.22 
TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4931 TCGA-76-6191 
        7.50         4.80         4.54         3.09         9.17        16.70 
TCGA-76-6192 TCGA-76-6280 TCGA-76-6282 TCGA-76-6656 TCGA-76-6657 TCGA-76-6662 
        3.29        11.38        17.06         4.83         5.03         9.27 
TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-87-5896 TCGA-OX-A56R TCGA-RR-A6KA 
        7.73         7.79         1.61        26.30         5.92         6.28 
TCGA-RR-A6KC TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4944 TCGA-CS-5390 
       20.55         4.70         7.69        43.89        10.62        64.64 
TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 
       40.18         0.10        21.01         9.96         6.38        17.69 
TCGA-CS-6188 TCGA-CS-6665 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-DB-5270 
       23.84        12.43         7.56         8.02         7.40       122.73 
TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5276 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 
       81.96        75.25        72.92        50.17        44.52        36.56 
TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XF 
       78.28        46.42        30.21        46.72        39.78        33.57 
TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q 
       72.95        31.63        24.20        25.48        30.12         5.98 
TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A75K 
       31.40        27.45        27.81        29.23        14.40        12.10 
TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75P TCGA-DH-5141 TCGA-DH-5143 TCGA-DH-5144 
       11.24        17.88        16.18        31.82        14.40         8.02 
TCGA-DH-A66B TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UV 
       42.05        17.19        54.25        13.12        13.38        18.61 
TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 
       14.56        17.46         6.74         8.45         6.81       182.33 
TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 
       18.94        17.49        15.16        52.11        22.42        49.02 
TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 
       75.16        46.06        87.45         7.04        11.64       133.74 
TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7007 TCGA-DU-7009 
       19.89        16.83         7.96         7.73        62.96       138.28 
TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7014 TCGA-DU-7015 TCGA-DU-7018 
      105.21         6.54         8.84       117.40        90.77        30.67 
TCGA-DU-7019 TCGA-DU-7294 TCGA-DU-7300 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 
       26.30        94.32        62.01        60.30        23.31        41.98 
TCGA-DU-7309 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8166 
        2.76        23.74        14.60        20.68        21.40        16.96 
TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TT TCGA-DU-A5TW TCGA-DU-A6S2 TCGA-DU-A6S6 
       14.24        12.59         4.96         5.65         8.65        77.98 
TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A7T6 TCGA-DU-A7TB 
        5.98        11.41        26.76         7.13        17.98        42.31 
TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5305 
       23.51         7.50        44.42         0.56        50.14        79.99 
TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-A7YO TCGA-E1-A7YV TCGA-E1-A7Z6 
      134.27        78.21        95.57        75.02        32.45        32.35 
TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5965 TCGA-FG-6690 TCGA-FG-6691 
       14.33         0.23         0.20        36.82        24.99        23.97 
TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7638 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 
       15.35        17.88        22.55        20.09        12.95        13.68 
TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MU 
       14.24        16.01        20.09        22.52        32.61        10.72 
TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A60K TCGA-FG-A6J1 TCGA-FG-A70Y TCGA-FG-A710 
       18.38        18.71        17.82        16.44        28.54        36.66 
TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 
       48.69        20.45        13.58        27.52         0.10         6.67 
TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 
        0.03        16.54         3.75         6.38        40.34        75.19 
TCGA-HT-7481 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 
       95.93       172.77         4.01         5.03        29.85        23.18 
TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7620 TCGA-HT-7676 
        3.16        22.06        45.99        56.09        14.27         0.16 
TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 
       16.24         0.76        44.68         6.05        42.74         0.10 
TCGA-HT-7691 TCGA-HT-7693 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7858 
        0.10        17.52        14.53        39.48        19.23        50.63 
TCGA-HT-7860 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 
        0.49        37.15         0.33         0.13         3.68         5.33 
TCGA-HT-7881 TCGA-HT-7884 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 
       35.47        11.28         1.64        16.24         9.40        63.55 
TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8107 
        0.10        37.87        33.01        12.23         6.25         0.46 
TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 
        2.50         5.56        13.78         0.23        29.59        34.19 
TCGA-HT-8563 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R9 TCGA-HT-A5RA 
       28.27         0.23        26.04         0.13         0.07        27.35 
TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A618 TCGA-HT-A619 
        0.10         5.33        16.93         1.81        16.83        21.40 
TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HW-7486 
       17.65         2.43        10.52        15.35        11.05        29.92 
TCGA-HW-7487 TCGA-HW-7490 TCGA-HW-7493 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 
       19.89        19.23        35.90         4.31        21.70        21.60 
TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM 
       19.59        17.82        20.35        12.76        20.81        20.71 
TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX 
       19.00        42.77        14.40         0.23         6.71         1.64 
TCGA-P5-A5EY TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F6 TCGA-P5-A72U 
        2.37         4.11         5.88         7.63         1.28         0.16 
TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-QH-A65R 
       13.25        11.64         0.20         9.01        13.61        15.16 
TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CX TCGA-QH-A6CZ 
       12.62        15.85        19.33        14.83        12.23         9.17 
TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC 
       10.29        14.53        16.34         1.91        16.50         5.03 
TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M 
       11.08        12.99        88.83        94.03        32.65        59.38 
TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-S9-A6TS 
       30.87         5.46        28.08         2.07        19.59        62.17 
TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ 
       87.12        18.77        37.84        34.49        31.33        28.70 
TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 
       22.95        17.62        23.64        32.61        16.08        98.24 
TCGA-S9-A6U9 TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH 
       95.93       106.39        69.50        72.59        80.12        32.45 
TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP 
       84.99        31.10        19.86        15.91        18.61        15.16 
TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IZ TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7QW 
       14.07        36.13         7.13         8.19         2.04        15.06 
TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 
       13.12        28.37        13.02       169.84        10.39        99.06 
TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA 
       30.05        98.63        31.59        48.33        49.32        34.78 
TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84J 
       48.39        24.92        16.18        40.64        30.44        24.16 
TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84T TCGA-TQ-A7RW TCGA-VM-A8C8 
       24.79        33.24        25.38        23.80        26.99        43.04 
TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CE TCGA-VM-A8CH TCGA-VV-A829 
       30.08        13.51         0.10        35.93        23.47        37.05 
TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 
       16.01        23.21         8.05        51.06        13.32        43.96 
TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D 
       39.88        43.40        45.80        46.88        37.71 

  DEL PEAK 33(13Q22.1) MUTATED DEL PEAK 33(13Q22.1) WILD-TYPE 
                          0.10                           0.03 
  DEL PEAK 33(13Q22.1) MUTATED DEL PEAK 33(13Q22.1) WILD-TYPE 
                        211.17                         182.33 
  DEL PEAK 33(13Q22.1) MUTATED DEL PEAK 33(13Q22.1) WILD-TYPE 
                        14.285                         14.930 
[1] "0.1 - 211.2 (14.3)" "0.0 - 182.3 (14.9)"
[1] "hr=" "1.4"
D65V2, continuous
D65V3, binary
                                cls
clus                               0   1
  DEL PEAK 33(13Q22.1) MUTATED   226 125
  DEL PEAK 33(13Q22.1) WILD-TYPE 344 347
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 33(13Q22.1) MUTATED    226  125
  DEL PEAK 33(13Q22.1) WILD-TYPE  344  347
                        clus
vv                       DEL PEAK 33(13Q22.1) MUTATED
  BRAIN                                           226
  CENTRAL NERVOUS SYSTEM                          125
                        clus
vv                       DEL PEAK 33(13Q22.1) WILD-TYPE
  BRAIN                                             344
  CENTRAL NERVOUS SYSTEM                            347
[1] 2 2
[1] FALSE
D65V4, binary
                                cls
clus                               0   1
  DEL PEAK 33(13Q22.1) MUTATED   135 216
  DEL PEAK 33(13Q22.1) WILD-TYPE 295 396
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 33(13Q22.1) MUTATED    135  216
  DEL PEAK 33(13Q22.1) WILD-TYPE  295  396
        clus
vv       DEL PEAK 33(13Q22.1) MUTATED DEL PEAK 33(13Q22.1) WILD-TYPE
  FEMALE                          135                            295
  MALE                            216                            396
[1] 2 2
[1] FALSE
D65V5, continuous
                                vv
clus                             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  DEL PEAK 33(13Q22.1) MUTATED            53                             8
  DEL PEAK 33(13Q22.1) WILD-TYPE         123                            19
                                vv
clus                             OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  DEL PEAK 33(13Q22.1) MUTATED                 31                41
  DEL PEAK 33(13Q22.1) WILD-TYPE               87               137
                                vv
clus                             TREATED PRIMARY GBM
  DEL PEAK 33(13Q22.1) MUTATED                     5
  DEL PEAK 33(13Q22.1) WILD-TYPE                  13
                                vv
clus                             UNTREATED PRIMARY (DE NOVO) GBM
  DEL PEAK 33(13Q22.1) MUTATED                               213
  DEL PEAK 33(13Q22.1) WILD-TYPE                             312
D65V6, multiclass
                                 clus
vv                                DEL PEAK 33(13Q22.1) MUTATED
  ASTROCYTOMA                                               53
  GLIOBLASTOMA MULTIFORME (GBM)                              8
  OLIGOASTROCYTOMA                                          31
  OLIGODENDROGLIOMA                                         41
  TREATED PRIMARY GBM                                        5
  UNTREATED PRIMARY (DE NOVO) GBM                          213
                                 clus
vv                                DEL PEAK 33(13Q22.1) WILD-TYPE
  ASTROCYTOMA                                                123
  GLIOBLASTOMA MULTIFORME (GBM)                               19
  OLIGOASTROCYTOMA                                            87
  OLIGODENDROGLIOMA                                          137
  TREATED PRIMARY GBM                                         13
  UNTREATED PRIMARY (DE NOVO) GBM                            312
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D65V7, binary
                                cls
clus                               0   1
  DEL PEAK 33(13Q22.1) MUTATED   179 172
  DEL PEAK 33(13Q22.1) WILD-TYPE 295 396
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 33(13Q22.1) MUTATED    179  172
  DEL PEAK 33(13Q22.1) WILD-TYPE  295  396
     clus
vv    DEL PEAK 33(13Q22.1) MUTATED DEL PEAK 33(13Q22.1) WILD-TYPE
  NO                           179                            295
  YES                          172                            396
[1] 2 2
[1] FALSE
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 33(13Q22.1) MUTATED                                  1     6
  DEL PEAK 33(13Q22.1) WILD-TYPE                                0    15
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 33(13Q22.1) MUTATED                          22   315
  DEL PEAK 33(13Q22.1) WILD-TYPE                        42   607
D65V8, multiclass
                                  clus
vv                                 DEL PEAK 33(13Q22.1) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            1
  ASIAN                                                       6
  BLACK OR AFRICAN AMERICAN                                  22
  WHITE                                                     315
                                  clus
vv                                 DEL PEAK 33(13Q22.1) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              0
  ASIAN                                                        15
  BLACK OR AFRICAN AMERICAN                                    42
  WHITE                                                       607
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D65V9, binary
                                cls
clus                               0   1
  DEL PEAK 33(13Q22.1) MUTATED     8 303
  DEL PEAK 33(13Q22.1) WILD-TYPE  22 588
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 33(13Q22.1) MUTATED      8  303
  DEL PEAK 33(13Q22.1) WILD-TYPE   22  588
                        clus
vv                       DEL PEAK 33(13Q22.1) MUTATED
  HISPANIC OR LATINO                                8
  NOT HISPANIC OR LATINO                          303
                        clus
vv                       DEL PEAK 33(13Q22.1) WILD-TYPE
  HISPANIC OR LATINO                                 22
  NOT HISPANIC OR LATINO                            588
[1] 2 2
[1] FALSE

Clustering(66) Variable = DEL PEAK 34(14Q13.1) MUTATION ANALYSIS
D66V1, survival
                                sevent
clus2                              0   1
  DEL PEAK 34(14Q13.1) MUTATED    71 161
  DEL PEAK 34(14Q13.1) WILD-TYPE 409 398
  DEL PEAK 34(14Q13.1) MUTATED DEL PEAK 34(14Q13.1) WILD-TYPE 
                           232                            807 
  DEL PEAK 34(14Q13.1) MUTATED DEL PEAK 34(14Q13.1) WILD-TYPE 
                           161                            398 
$`DEL PEAK 34(14Q13.1) MUTATED`
TCGA-02-0001 TCGA-02-0007 TCGA-02-0010 TCGA-02-0011 TCGA-02-0016 TCGA-02-0024 
       11.77        23.18        35.41        20.71        87.06        53.10 
TCGA-02-0025 TCGA-02-0034 TCGA-02-0038 TCGA-02-0039 TCGA-02-0047 TCGA-02-0048 
       42.74        14.14        10.72        10.52        14.73         3.22 
TCGA-02-0051 TCGA-02-0055 TCGA-02-0074 TCGA-02-0086 TCGA-02-0099 TCGA-02-0107 
       15.09         2.50        10.19         8.81         3.48        17.65 
TCGA-02-0113 TCGA-02-0281 TCGA-02-0324 TCGA-02-0325 TCGA-02-0330 TCGA-02-0332 
       92.65         3.98         7.73        10.62        15.91        25.71 
TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 TCGA-02-2483 
       11.34         9.27        16.21         3.35        16.80        15.32 
TCGA-02-2486 TCGA-06-0125 TCGA-06-0128 TCGA-06-0130 TCGA-06-0138 TCGA-06-0141 
       20.32        47.61        22.72        12.95        24.23        10.29 
TCGA-06-0143 TCGA-06-0146 TCGA-06-0162 TCGA-06-0166 TCGA-06-0188 TCGA-06-0194 
       11.74        20.09         3.42         5.85        44.58         4.67 
TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 TCGA-06-0241 TCGA-06-0397 TCGA-06-0409 
       24.16         0.72        19.82        48.69         9.01        72.36 
TCGA-06-0410 TCGA-06-0644 TCGA-06-0646 TCGA-06-0649 TCGA-06-0745 TCGA-06-0749 
        4.70        12.62         5.75         2.10         7.86         2.70 
TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0878 TCGA-06-1084 TCGA-06-2561 
        0.92        43.46        46.19         7.17        23.93        17.65 
TCGA-06-5408 TCGA-06-5411 TCGA-06-5413 TCGA-06-5416 TCGA-06-5856 TCGA-06-6388 
       11.74         8.35         8.81         6.71         3.75         5.23 
TCGA-06-6389 TCGA-06-6390 TCGA-06-6697 TCGA-06-6699 TCGA-06-A5U1 TCGA-06-A6S1 
        7.79         5.39        12.85         1.55         1.87         2.56 
TCGA-06-A7TL TCGA-08-0245 TCGA-08-0347 TCGA-08-0352 TCGA-08-0380 TCGA-08-0390 
        5.42        37.84        25.71         1.28        14.93        13.97 
TCGA-08-0392 TCGA-08-0512 TCGA-08-0520 TCGA-08-0524 TCGA-12-0616 TCGA-12-0654 
        0.72        42.15        10.75         7.27        14.73         7.59 
TCGA-12-0662 TCGA-12-0692 TCGA-12-0703 TCGA-12-0775 TCGA-12-0821 TCGA-12-1088 
       38.17         3.65        20.38         7.63        10.62       127.59 
TCGA-12-1089 TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 TCGA-12-1096 TCGA-12-1099 
        5.82        33.21        21.73        15.98         9.11         4.14 
TCGA-12-1598 TCGA-12-1599 TCGA-12-1602 TCGA-12-3651 TCGA-12-3653 TCGA-12-5295 
       15.65        25.68         6.77        12.69        14.53        14.93 
TCGA-14-0736 TCGA-14-0783 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0865 
       15.12         6.21         1.35         5.39         2.89        16.50 
TCGA-14-1455 TCGA-14-1459 TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 
        0.92        12.43        17.85         7.63         7.17        17.49 
TCGA-14-3477 TCGA-15-0742 TCGA-15-1447 TCGA-16-0848 TCGA-16-0861 TCGA-16-1045 
        3.78        13.78        53.19        17.59         4.31        29.03 
TCGA-19-1389 TCGA-19-1390 TCGA-19-1791 TCGA-19-2623 TCGA-19-2625 TCGA-19-2629 
        4.64        25.38         0.13         7.53         4.08        24.23 
TCGA-19-5947 TCGA-19-5956 TCGA-19-5960 TCGA-19-A6J4 TCGA-26-1438 TCGA-26-1439 
        6.64        22.49        14.96         3.98        10.03        13.87 
TCGA-26-1440 TCGA-26-5133 TCGA-26-5134 TCGA-26-6173 TCGA-27-1832 TCGA-27-1834 
        9.73        14.86         5.49         7.92         9.86        40.54 
TCGA-27-1835 TCGA-27-2519 TCGA-27-2527 TCGA-28-1750 TCGA-28-1756 TCGA-28-2506 
       21.30        10.39        14.40         8.35         2.83         6.74 
TCGA-28-2509 TCGA-28-2514 TCGA-28-5207 TCGA-28-5213 TCGA-28-5215 TCGA-28-5216 
        4.77         5.26        11.28        31.27        11.01        13.64 
TCGA-28-5220 TCGA-32-1976 TCGA-32-1980 TCGA-32-2615 TCGA-32-2634 TCGA-32-4210 
       12.76         0.49         1.18        15.95        22.78         3.72 
TCGA-32-5222 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 
       19.23         8.94         9.53         0.99         4.44        11.84 
TCGA-41-4097 TCGA-74-6575 TCGA-74-6581 TCGA-74-6584 TCGA-76-4928 TCGA-76-4929 
        0.20        20.91         8.22         7.50         3.09         3.65 
TCGA-76-4934 TCGA-76-6191 TCGA-76-6193 TCGA-76-6282 TCGA-76-6285 TCGA-76-6664 
        2.53        16.70         2.70        17.06         8.35         7.79 
TCGA-OX-A56R TCGA-CS-4941 TCGA-CS-6668 TCGA-DB-5279 TCGA-DB-A64L TCGA-DB-A64O 
        5.92         7.69         8.02        44.52        24.20        25.48 
TCGA-DH-5140 TCGA-DH-5142 TCGA-DH-5143 TCGA-DU-5847 TCGA-DU-5852 TCGA-DU-6397 
       19.96        30.31        14.40        18.02         6.74        46.06 
TCGA-DU-6399 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7010 TCGA-DU-7012 TCGA-DU-7290 
       65.75        11.47        62.96        14.99         6.54        10.36 
TCGA-DU-7302 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8165 TCGA-DU-A6S8 TCGA-DU-A76L 
       60.30         5.10        23.74        19.13         5.98        26.76 
TCGA-DU-A76R TCGA-E1-5322 TCGA-FG-7643 TCGA-FG-8191 TCGA-FG-A6J3 TCGA-FG-A70Z 
       21.30       130.78        20.09        32.61        22.26        10.78 
TCGA-HT-7616 TCGA-HT-7902 TCGA-HT-8110 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A617 
        0.23        31.43        13.78        15.72         0.23        16.14 
TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61C TCGA-HW-A5KK TCGA-P5-A5EZ TCGA-QH-A6CS 
       16.83        21.40        17.65        12.76         2.30        19.33 
TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CZ TCGA-RY-A840 TCGA-S9-A6TS TCGA-S9-A6WM 
       14.53        13.61         9.17        28.08        62.17        19.86 
TCGA-S9-A7IX TCGA-S9-A7QZ TCGA-S9-A7R2 TCGA-S9-A89V TCGA-TM-A84I TCGA-VM-A8CB 
       22.32        13.02        10.39        18.71        28.08         0.10 
TCGA-VM-A8CD TCGA-VV-A829 TCGA-WY-A858 TCGA-WY-A85B 
        7.89        37.05        43.96        45.80 

$`DEL PEAK 34(14Q13.1) WILD-TYPE`
TCGA-02-0003 TCGA-02-0006 TCGA-02-0009 TCGA-02-0014 TCGA-02-0015 TCGA-02-0021 
        4.73        18.35        10.59        82.59        20.61        77.65 
TCGA-02-0023 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0037 
       20.12        24.59        12.16        90.58         2.83         3.62 
TCGA-02-0043 TCGA-02-0046 TCGA-02-0052 TCGA-02-0054 TCGA-02-0057 TCGA-02-0058 
       18.31         6.87        12.59         6.54        19.86         8.35 
TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 
        9.57         6.02        19.73        26.43        28.70        25.05 
TCGA-02-0071 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 
        5.49        20.84        27.25        89.72        22.72        12.62 
TCGA-02-0085 TCGA-02-0087 TCGA-02-0089 TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 
       51.32        57.76        16.96        27.02        65.00        11.67 
TCGA-02-0111 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 
       23.18        99.98        15.65        48.95        16.54        16.93 
TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 
       17.72        10.75        14.47        13.87        14.20        15.95 
TCGA-02-0317 TCGA-02-0321 TCGA-02-0326 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 
       12.23         9.90         7.33         4.37        25.12        10.59 
TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-2470 TCGA-02-2485 
       12.39        14.50        10.55        47.11        12.92        15.45 
TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 TCGA-06-0127 TCGA-06-0129 
        2.70         6.15        20.38         6.94         3.98        33.67 
TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0139 TCGA-06-0140 TCGA-06-0142 
       25.35        14.30        26.70        11.90         0.20         2.20 
TCGA-06-0145 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 
        2.33        17.79        10.09         8.61        19.46        46.59 
TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 
       12.33        13.94        10.45         3.19        10.82         9.44 
TCGA-06-0160 TCGA-06-0164 TCGA-06-0165 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 
       11.80        56.91        10.65        19.66         3.29        13.12 
TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 
        4.47         3.22         4.04        91.00         4.18        88.14 
TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0189 
       20.25         3.65        69.90        73.84        27.22        15.42 
TCGA-06-0190 TCGA-06-0192 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 
       10.42        38.96         7.40         5.56         0.39         7.66 
TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 
        8.42         7.63         7.40        11.84         0.53        15.02 
TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 TCGA-06-0394 TCGA-06-0402 TCGA-06-0412 
       13.64        13.32        20.42        10.82         0.26         9.57 
TCGA-06-0413 TCGA-06-0414 TCGA-06-0645 TCGA-06-0648 TCGA-06-0650 TCGA-06-0686 
        3.16        35.11         5.75         9.80        23.57        14.20 
TCGA-06-0743 TCGA-06-0744 TCGA-06-0747 TCGA-06-0877 TCGA-06-0879 TCGA-06-0881 
       26.40        46.88         2.70         5.65        40.41        16.57 
TCGA-06-0882 TCGA-06-0939 TCGA-06-1086 TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 
       20.78        26.76         6.84         4.04        26.79        11.84 
TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 
       15.32        13.61        33.90        15.32         1.08        12.49 
TCGA-06-2559 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 
        4.93        12.56        30.64         5.95        16.64         5.98 
TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5410 TCGA-06-5412 TCGA-06-5414 
        4.37         0.43        31.50         3.55         4.54         8.98 
TCGA-06-5415 TCGA-06-5418 TCGA-06-5858 TCGA-06-5859 TCGA-06-6391 TCGA-06-6693 
        8.55         2.73         6.15         4.57         1.48       120.56 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6698 TCGA-06-6700 TCGA-06-6701 TCGA-06-A5U0 
        7.36         8.32         4.77         4.77         4.96         4.70 
TCGA-06-A6S0 TCGA-06-A7TK TCGA-08-0244 TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 
        3.12         5.39        22.68         4.18       115.86         1.74 
TCGA-08-0346 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0353 
        8.42        12.16         9.80        29.23        65.33         8.42 
TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 
       17.95        24.56        31.10        37.58        22.29         3.39 
TCGA-08-0375 TCGA-08-0386 TCGA-08-0389 TCGA-08-0509 TCGA-08-0510 TCGA-08-0514 
       12.23        18.02        15.35        12.56         4.27        11.08 
TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 TCGA-08-0521 TCGA-08-0525 TCGA-08-0529 
       19.59        58.68        19.33         4.80        15.98        18.41 
TCGA-08-0531 TCGA-12-0615 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0656 
        7.56        15.35        12.99        34.92        10.45        94.78 
TCGA-12-0657 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0707 TCGA-12-0769 
        0.10        25.97        26.66        12.13        28.41        15.06 
TCGA-12-0772 TCGA-12-0773 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 
       53.85        43.23         9.73        14.93        14.86        91.76 
TCGA-12-0819 TCGA-12-0820 TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 
       24.79        18.48        23.51        27.78        38.76         8.94 
TCGA-12-0829 TCGA-12-1090 TCGA-12-1094 TCGA-12-1095 TCGA-12-1097 TCGA-12-1098 
       20.58         7.59        12.23        15.85        14.53         3.98 
TCGA-12-1600 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 
       14.73        59.77        44.02        26.93        15.22        10.95 
TCGA-12-3652 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 
       34.92         3.22         2.04        11.97         0.95        23.05 
TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 TCGA-14-0866 TCGA-14-0867 
        2.24        11.24        13.78         3.25        26.33         2.04 
TCGA-14-0871 TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 
       28.93        15.95        19.30         0.79         1.38         1.12 
TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 
        3.75        32.05        58.78        23.11         7.10         1.15 
TCGA-14-1454 TCGA-14-1456 TCGA-14-1458 TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 
       30.18        40.96         6.67         0.99         1.97        17.79 
TCGA-14-1827 TCGA-14-2555 TCGA-14-4157 TCGA-15-1444 TCGA-15-1446 TCGA-15-1449 
        5.88         7.96         3.42        50.53        19.10        13.28 
TCGA-16-0846 TCGA-16-0849 TCGA-16-0850 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 
        3.91        26.07        16.37         4.57        10.29        14.01 
TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 
        9.14        21.24        13.97         6.41        11.77        21.90 
TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 
        8.61         0.66        14.27         3.39        10.75         9.07 
TCGA-19-1387 TCGA-19-1388 TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 
        5.95        12.95         3.65         7.17        12.66         3.25 
TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2624 TCGA-19-2631 TCGA-19-4065 
        9.67         4.87         1.08         0.16         7.00         7.04 
TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 
       17.19         8.02        18.90         4.73        12.10         1.78 
TCGA-19-5958 TCGA-19-5959 TCGA-19-A60I TCGA-19-A6J5 TCGA-26-1442 TCGA-26-1443 
       14.07        16.80        17.79        28.54        31.33         7.13 
TCGA-26-1799 TCGA-26-5132 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6174 
        9.37         9.40         8.88        18.97         1.58         2.33 
TCGA-26-A7UX TCGA-27-1830 TCGA-27-1831 TCGA-27-1833 TCGA-27-1836 TCGA-27-1837 
       19.33         5.06        16.60        24.23        30.05        14.04 
TCGA-27-1838 TCGA-27-2518 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 
       11.51        24.76        10.39        16.08         7.59         2.86 
TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1751 TCGA-28-1752 
       15.78         0.20         2.53         9.21         7.63         8.48 
TCGA-28-1753 TCGA-28-1755 TCGA-28-1757 TCGA-28-2502 TCGA-28-2513 TCGA-28-5204 
        1.22         1.55         0.13         0.66         7.30        14.93 
TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5214 TCGA-28-5218 TCGA-28-5219 
       17.88        14.53        11.77        23.44         5.16        22.68 
TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 
        5.42        15.39        21.07         0.10        15.85        19.50 
TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 
        4.67        12.69        14.86        16.93        12.23        20.78 
TCGA-32-2495 TCGA-32-2616 TCGA-32-2632 TCGA-32-2638 TCGA-32-4208 TCGA-32-4211 
       15.02         7.36         8.84        25.18        21.14        12.59 
TCGA-32-4213 TCGA-32-4719 TCGA-41-2571 TCGA-41-2572 TCGA-41-5651 TCGA-41-6646 
       19.86        10.85         0.85        13.35        15.12        12.46 
TCGA-4W-AA9S TCGA-4W-AA9T TCGA-74-6573 TCGA-74-6577 TCGA-74-6578 TCGA-76-4925 
        4.14        14.76         3.45         4.34        14.33         4.80 
TCGA-76-4926 TCGA-76-4931 TCGA-76-4935 TCGA-76-6192 TCGA-76-6280 TCGA-76-6286 
        4.54         9.17        10.78         3.29        11.38        20.98 
TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-81-5910 
        4.83         5.03         0.23         9.27         7.73         1.61 
TCGA-81-5911 TCGA-87-5896 TCGA-RR-A6KA TCGA-RR-A6KC TCGA-CS-4938 TCGA-CS-4942 
       17.72        26.30         6.28        20.55         4.70        43.89 
TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 
       18.15        10.62        64.64        40.18         0.10        21.01 
TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 
        9.96         6.38        17.69        23.84        17.95        12.43 
TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 
        8.48         7.56         7.40         6.61       122.73        81.96 
TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5280 
       75.25        47.93        72.92        50.86        50.17        36.56 
TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD 
       78.28        46.42        18.84        30.21        46.72        39.78 
TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64P TCGA-DB-A64Q 
       37.45        33.57        72.95        31.63        30.12         5.98 
TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X 
       31.40        27.45        27.81        29.23        14.40        18.51 
TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5141 
       12.10        11.24        17.88        30.74        16.18        31.82 
TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G 
        8.02        30.21        42.05        27.81        17.19        17.19 
TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5849 
       54.25        13.12        13.38         3.45        18.61        14.56 
TCGA-DU-5851 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 
       17.46        13.38         8.45         6.81       182.33        18.94 
TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 
       17.49        15.16       211.17        52.11        22.42        49.02 
TCGA-DU-6396 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 
       75.16         1.22        87.45         7.04        11.64       133.74 
TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 
       19.89        16.83        94.52       114.08         7.96         7.73 
TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7011 TCGA-DU-7013 TCGA-DU-7014 TCGA-DU-7015 
      156.23       138.28       105.21         8.84       117.40        90.77 
TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 
       30.67        26.30         7.96        94.32        18.94        44.02 
TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8162 
       62.01        25.91        23.31        41.98         2.76        14.60 
TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP 
       20.68        21.40        16.96        15.48        14.17        14.24 
TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY 
       12.59        15.12         4.96         3.65         5.65        12.20 
TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A76K TCGA-DU-A76O 
        8.65         2.70        77.98         7.23        11.41         7.13 
TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD 
       17.98       124.50        77.88        42.31        23.51         7.50 
TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 
       44.42         0.56        50.14        67.46        41.13        79.99 
TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-A7YO TCGA-E1-A7YV 
       57.93       134.27        78.21        95.57        75.02        32.45 
TCGA-E1-A7YW TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 
       36.82        32.35        14.33         0.23         0.20        47.77 
TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 
       25.48        34.36        36.82        18.77        14.93        24.99 
TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7638 TCGA-FG-7641 
       23.97        18.44        15.35        17.88        22.55        20.61 
TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 
       12.95        13.68        14.24        16.01        20.09        14.96 
TCGA-FG-8189 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY 
       22.52        38.27        10.72        18.38        18.71        23.70 
TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A70Y 
       14.76        17.82        16.41        15.02        16.44        28.54 
TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 
       36.66        48.69        20.45        13.58         5.72        27.52 
TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 
        0.10         6.67        11.54        40.11         0.13         0.03 
TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 
       16.54         3.75        17.42         6.54        24.26         6.38 
TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 
       40.34        75.19        95.93       106.95       172.77         4.01 
TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 
        5.03        29.85        23.18       122.47         4.57        17.29 
TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7620 
        3.16        22.06        45.99        56.09        57.60        14.27 
TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 
        0.16        16.24         0.76        44.68         6.05        42.74 
TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 
        0.10        31.69        14.96         0.10         0.10         2.96 
TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 
       17.52         6.90        14.53        39.48        19.23        39.09 
TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 
        0.23        50.63         0.49        23.61        37.15         0.33 
TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 
        0.13         3.68         5.33        35.47         3.72        11.28 
TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 
        1.64        16.24         9.40        63.55         0.10        37.87 
TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 
       33.01        12.23         6.25         0.10         0.46         2.50 
TCGA-HT-8109 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8563 TCGA-HT-A4DV 
        5.56         0.23        29.59        34.19        28.27        26.04 
TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC 
        0.13        20.22         0.07        27.35         0.10         5.33 
TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A61B TCGA-HT-A74H TCGA-HT-A74J 
        2.70        16.93         1.81        17.52         2.43        10.52 
TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 
       15.35        11.05         0.10        29.92        19.89         8.32 
TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7493 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 
       19.23        40.18        35.90         4.31        21.70        21.60 
TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 
       19.59        17.82        20.35        20.81        20.71        19.00 
TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX 
       42.77        14.40        14.40         0.23         6.71         1.64 
TCGA-P5-A5EY TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 
        2.37         4.11         5.88         7.63         0.76         1.28 
TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 
        0.16        10.42        13.25        11.64         0.20         9.01 
TCGA-P5-A733 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z 
       13.61        15.16         2.53        12.62        15.85        14.04 
TCGA-QH-A6CU TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 
       14.83        12.23         2.20        10.29        14.53        16.34 
TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 
       16.73         1.91        16.50         5.03        11.08        12.99 
TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y 
       88.83        94.03        32.65        59.38        30.87         5.46 
TCGA-RY-A83Z TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TU TCGA-S9-A6TV 
        9.90         2.07        19.59        30.67        87.12        18.77 
TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 
       37.84        34.49        31.33        28.70        22.95        17.62 
TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA 
       23.64        32.61        16.08        98.24        95.93         5.85 
TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI 
      106.39        69.50        72.59        80.12        32.45        84.99 
TCGA-S9-A6WL TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ 
       31.10        15.91        18.61        15.16        14.07        36.13 
TCGA-S9-A7IS TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 
        7.92        23.51         7.13        20.02         8.19         2.04 
TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7R1 TCGA-S9-A7R3 
       17.03        15.06        13.12        28.37       169.84        99.06 
TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 
       30.05        98.63        31.59        11.97        49.45        48.33 
TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F 
       49.32        34.78        48.39        24.92        16.18        59.05 
TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O 
       40.64        30.44        24.16        40.83        24.79        33.24 
TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RH TCGA-TQ-A7RW 
       25.38        18.61        14.93        23.80        15.98        26.99 
TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CE TCGA-VM-A8CH TCGA-VV-A86M 
       43.04        30.08        13.51        35.93        23.47        16.01 
TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A859 TCGA-WY-A85A 
       23.21         8.05        51.06        13.32        39.88        43.40 
TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       46.88        37.71        20.81 

  DEL PEAK 34(14Q13.1) MUTATED DEL PEAK 34(14Q13.1) WILD-TYPE 
                          0.10                           0.03 
  DEL PEAK 34(14Q13.1) MUTATED DEL PEAK 34(14Q13.1) WILD-TYPE 
                        130.78                         211.17 
  DEL PEAK 34(14Q13.1) MUTATED DEL PEAK 34(14Q13.1) WILD-TYPE 
                        12.655                         15.160 
[1] "0.1 - 130.8 (12.7)" "0.0 - 211.2 (15.2)"
[1] "hr=" "1.8"
D66V2, continuous
D66V3, binary
                                cls
clus                               0   1
  DEL PEAK 34(14Q13.1) MUTATED   175  57
  DEL PEAK 34(14Q13.1) WILD-TYPE 395 415
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 34(14Q13.1) MUTATED    175   57
  DEL PEAK 34(14Q13.1) WILD-TYPE  395  415
                        clus
vv                       DEL PEAK 34(14Q13.1) MUTATED
  BRAIN                                           175
  CENTRAL NERVOUS SYSTEM                           57
                        clus
vv                       DEL PEAK 34(14Q13.1) WILD-TYPE
  BRAIN                                             395
  CENTRAL NERVOUS SYSTEM                            415
[1] 2 2
[1] FALSE
D66V4, binary
                                cls
clus                               0   1
  DEL PEAK 34(14Q13.1) MUTATED   103 129
  DEL PEAK 34(14Q13.1) WILD-TYPE 327 483
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 34(14Q13.1) MUTATED    103  129
  DEL PEAK 34(14Q13.1) WILD-TYPE  327  483
        clus
vv       DEL PEAK 34(14Q13.1) MUTATED DEL PEAK 34(14Q13.1) WILD-TYPE
  FEMALE                          103                            327
  MALE                            129                            483
[1] 2 2
[1] FALSE
D66V5, continuous
                                vv
clus                             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  DEL PEAK 34(14Q13.1) MUTATED            26                             5
  DEL PEAK 34(14Q13.1) WILD-TYPE         150                            22
                                vv
clus                             OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  DEL PEAK 34(14Q13.1) MUTATED                 13                18
  DEL PEAK 34(14Q13.1) WILD-TYPE              105               160
                                vv
clus                             TREATED PRIMARY GBM
  DEL PEAK 34(14Q13.1) MUTATED                     6
  DEL PEAK 34(14Q13.1) WILD-TYPE                  12
                                vv
clus                             UNTREATED PRIMARY (DE NOVO) GBM
  DEL PEAK 34(14Q13.1) MUTATED                               164
  DEL PEAK 34(14Q13.1) WILD-TYPE                             361
D66V6, multiclass
                                 clus
vv                                DEL PEAK 34(14Q13.1) MUTATED
  ASTROCYTOMA                                               26
  GLIOBLASTOMA MULTIFORME (GBM)                              5
  OLIGOASTROCYTOMA                                          13
  OLIGODENDROGLIOMA                                         18
  TREATED PRIMARY GBM                                        6
  UNTREATED PRIMARY (DE NOVO) GBM                          164
                                 clus
vv                                DEL PEAK 34(14Q13.1) WILD-TYPE
  ASTROCYTOMA                                                150
  GLIOBLASTOMA MULTIFORME (GBM)                               22
  OLIGOASTROCYTOMA                                           105
  OLIGODENDROGLIOMA                                          160
  TREATED PRIMARY GBM                                         12
  UNTREATED PRIMARY (DE NOVO) GBM                            361
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D66V7, binary
                                cls
clus                               0   1
  DEL PEAK 34(14Q13.1) MUTATED   129 103
  DEL PEAK 34(14Q13.1) WILD-TYPE 345 465
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 34(14Q13.1) MUTATED    129  103
  DEL PEAK 34(14Q13.1) WILD-TYPE  345  465
     clus
vv    DEL PEAK 34(14Q13.1) MUTATED DEL PEAK 34(14Q13.1) WILD-TYPE
  NO                           129                            345
  YES                          103                            465
[1] 2 2
[1] FALSE
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 34(14Q13.1) MUTATED                                  1     4
  DEL PEAK 34(14Q13.1) WILD-TYPE                                0    17
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 34(14Q13.1) MUTATED                          20   196
  DEL PEAK 34(14Q13.1) WILD-TYPE                        44   726
D66V8, multiclass
                                  clus
vv                                 DEL PEAK 34(14Q13.1) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            1
  ASIAN                                                       4
  BLACK OR AFRICAN AMERICAN                                  20
  WHITE                                                     196
                                  clus
vv                                 DEL PEAK 34(14Q13.1) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              0
  ASIAN                                                        17
  BLACK OR AFRICAN AMERICAN                                    44
  WHITE                                                       726
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D66V9, binary
                                cls
clus                               0   1
  DEL PEAK 34(14Q13.1) MUTATED     2 192
  DEL PEAK 34(14Q13.1) WILD-TYPE  28 699
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 34(14Q13.1) MUTATED      2  192
  DEL PEAK 34(14Q13.1) WILD-TYPE   28  699
                        clus
vv                       DEL PEAK 34(14Q13.1) MUTATED
  HISPANIC OR LATINO                                2
  NOT HISPANIC OR LATINO                          192
                        clus
vv                       DEL PEAK 34(14Q13.1) WILD-TYPE
  HISPANIC OR LATINO                                 28
  NOT HISPANIC OR LATINO                            699
[1] 2 2
[1] FALSE

Clustering(67) Variable = DEL PEAK 35(14Q24.2) MUTATION ANALYSIS
D67V1, survival
                                sevent
clus2                              0   1
  DEL PEAK 35(14Q24.2) MUTATED   104 172
  DEL PEAK 35(14Q24.2) WILD-TYPE 376 387
  DEL PEAK 35(14Q24.2) MUTATED DEL PEAK 35(14Q24.2) WILD-TYPE 
                           276                            763 
  DEL PEAK 35(14Q24.2) MUTATED DEL PEAK 35(14Q24.2) WILD-TYPE 
                           172                            387 
$`DEL PEAK 35(14Q24.2) MUTATED`
TCGA-02-0007 TCGA-02-0010 TCGA-02-0011 TCGA-02-0016 TCGA-02-0024 TCGA-02-0025 
       23.18        35.41        20.71        87.06        53.10        42.74 
TCGA-02-0026 TCGA-02-0034 TCGA-02-0039 TCGA-02-0047 TCGA-02-0048 TCGA-02-0051 
       24.59        14.14        10.52        14.73         3.22        15.09 
TCGA-02-0055 TCGA-02-0058 TCGA-02-0060 TCGA-02-0069 TCGA-02-0074 TCGA-02-0086 
        2.50         8.35         6.02        28.70        10.19         8.81 
TCGA-02-0099 TCGA-02-0104 TCGA-02-0107 TCGA-02-0113 TCGA-02-0258 TCGA-02-0266 
        3.48        65.00        17.65        92.65        16.54        17.72 
TCGA-02-0281 TCGA-02-0324 TCGA-02-0325 TCGA-02-0330 TCGA-02-0332 TCGA-02-0432 
        3.98         7.73        10.62        15.91        25.71        47.11 
TCGA-02-0446 TCGA-02-0456 TCGA-02-2466 TCGA-02-2483 TCGA-06-0128 TCGA-06-0129 
        9.27         3.35        16.80        15.32        22.72        33.67 
TCGA-06-0130 TCGA-06-0138 TCGA-06-0141 TCGA-06-0143 TCGA-06-0146 TCGA-06-0155 
       12.95        24.23        10.29        11.74        20.09        10.45 
TCGA-06-0162 TCGA-06-0166 TCGA-06-0171 TCGA-06-0188 TCGA-06-0194 TCGA-06-0214 
        3.42         5.85        13.12        44.58         4.67        15.02 
TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 TCGA-06-0241 TCGA-06-0409 TCGA-06-0410 
       24.16         0.72        19.82        48.69        72.36         4.70 
TCGA-06-0412 TCGA-06-0644 TCGA-06-0646 TCGA-06-0649 TCGA-06-0745 TCGA-06-0750 
        9.57        12.62         5.75         2.10         7.86         0.92 
TCGA-06-0875 TCGA-06-0876 TCGA-06-0878 TCGA-06-2561 TCGA-06-5408 TCGA-06-5411 
       43.46        46.19         7.17        17.65        11.74         8.35 
TCGA-06-5416 TCGA-06-5856 TCGA-06-5859 TCGA-06-6389 TCGA-06-6390 TCGA-06-6697 
        6.71         3.75         4.57         7.79         5.39        12.85 
TCGA-06-6699 TCGA-06-A5U1 TCGA-06-A6S1 TCGA-06-A7TL TCGA-08-0245 TCGA-08-0380 
        1.55         1.87         2.56         5.42        37.84        14.93 
TCGA-08-0390 TCGA-08-0392 TCGA-08-0512 TCGA-08-0517 TCGA-08-0520 TCGA-12-0615 
       13.97         0.72        42.15        58.68        10.75        15.35 
TCGA-12-0616 TCGA-12-0654 TCGA-12-0662 TCGA-12-0691 TCGA-12-0692 TCGA-12-0776 
       14.73         7.59        38.17        12.13         3.65         9.73 
TCGA-12-0821 TCGA-12-0827 TCGA-12-1088 TCGA-12-1089 TCGA-12-1091 TCGA-12-1092 
       10.62        38.76       127.59         5.82        33.21        21.73 
TCGA-12-1096 TCGA-12-1598 TCGA-12-1600 TCGA-12-1602 TCGA-12-3651 TCGA-12-3653 
        9.11        15.65        14.73         6.77        12.69        14.53 
TCGA-12-5295 TCGA-14-0736 TCGA-14-0783 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 
       14.93        15.12         6.21         1.35         5.39         2.89 
TCGA-14-0865 TCGA-14-1396 TCGA-14-1401 TCGA-14-1453 TCGA-14-1455 TCGA-14-1821 
       16.50         1.12         3.75         1.15         0.92        17.79 
TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-3477 TCGA-14-4157 TCGA-15-1447 
       17.85         7.63         7.17         3.78         3.42        53.19 
TCGA-16-0848 TCGA-16-0861 TCGA-16-1045 TCGA-19-0962 TCGA-19-1389 TCGA-19-1390 
       17.59         4.31        29.03         0.66         4.64        25.38 
TCGA-19-1791 TCGA-19-2623 TCGA-19-2625 TCGA-19-2629 TCGA-19-5947 TCGA-19-5956 
        0.13         7.53         4.08        24.23         6.64        22.49 
TCGA-19-5960 TCGA-19-A6J4 TCGA-26-1439 TCGA-26-1440 TCGA-26-5133 TCGA-26-5134 
       14.96         3.98        13.87         9.73        14.86         5.49 
TCGA-27-1832 TCGA-27-1834 TCGA-27-1835 TCGA-27-2519 TCGA-27-2527 TCGA-28-1750 
        9.86        40.54        21.30        10.39        14.40         8.35 
TCGA-28-1756 TCGA-28-2506 TCGA-28-2509 TCGA-28-2514 TCGA-28-5207 TCGA-28-5213 
        2.83         6.74         4.77         5.26        11.28        31.27 
TCGA-28-5215 TCGA-28-5216 TCGA-28-5220 TCGA-32-1976 TCGA-32-1980 TCGA-32-2494 
       11.01        13.64        12.76         0.49         1.18        20.78 
TCGA-32-2615 TCGA-32-2616 TCGA-32-2634 TCGA-32-4208 TCGA-41-2573 TCGA-41-2575 
       15.95         7.36        22.78        21.14         8.94         9.53 
TCGA-41-3392 TCGA-41-4097 TCGA-76-4928 TCGA-76-4929 TCGA-76-4934 TCGA-76-6193 
        0.99         0.20         3.09         3.65         2.53         2.70 
TCGA-76-6282 TCGA-76-6285 TCGA-OX-A56R TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 
       17.06         8.35         5.92         4.70         7.69        43.89 
TCGA-CS-4944 TCGA-CS-6668 TCGA-DB-5279 TCGA-DB-A4XA TCGA-DB-A64L TCGA-DB-A64O 
       10.62         8.02        44.52        18.84        24.20        25.48 
TCGA-DH-5140 TCGA-DH-5142 TCGA-DH-5143 TCGA-DU-5847 TCGA-DU-5852 TCGA-DU-5855 
       19.96        30.31        14.40        18.02         6.74         6.81 
TCGA-DU-5872 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6403 TCGA-DU-6408 
       17.49        75.16        46.06        65.75        11.64       114.08 
TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7010 TCGA-DU-7012 TCGA-DU-7019 
        7.73        11.47        62.96        14.99         6.54        26.30 
TCGA-DU-7290 TCGA-DU-7298 TCGA-DU-7302 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8165 
       10.36        18.94        60.30         5.10        23.74        19.13 
TCGA-DU-A6S8 TCGA-DU-A76L TCGA-DU-A76R TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 
        5.98        26.76        21.30        41.13        79.99        57.93 
TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YV TCGA-EZ-7264 TCGA-FG-5963 TCGA-FG-7643 
       95.57       130.78        32.45        14.33        25.48        20.09 
TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MY TCGA-FG-A6J3 TCGA-HT-7477 TCGA-HT-7603 
       32.61        38.27        23.70        22.26        24.26        23.18 
TCGA-HT-7606 TCGA-HT-7616 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7858 TCGA-HT-7902 
       17.29         0.23        31.69        14.96        50.63        31.43 
TCGA-HT-8110 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A615 TCGA-HT-A617 
       13.78        28.27        15.72         0.23        16.93        16.14 
TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61C TCGA-HW-7489 TCGA-HW-A5KK TCGA-IK-8125 
       16.83        21.40        17.65         8.32        12.76        42.77 
TCGA-P5-A5EV TCGA-P5-A5EX TCGA-P5-A5EZ TCGA-P5-A5F2 TCGA-QH-A6CS TCGA-QH-A6CV 
        0.23         1.64         2.30         7.63        19.33        14.53 
TCGA-QH-A6CW TCGA-QH-A6CZ TCGA-QH-A6X4 TCGA-R8-A6MK TCGA-R8-A73M TCGA-RY-A83Z 
       13.61         9.17        14.53        88.83        59.38         9.90 
TCGA-RY-A840 TCGA-S9-A6TS TCGA-S9-A6WD TCGA-S9-A6WM TCGA-S9-A6WP TCGA-S9-A7IX 
       28.08        62.17        69.50        19.86        15.16        22.32 
TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7QX TCGA-S9-A7QZ TCGA-S9-A7R2 TCGA-S9-A7R3 
       20.02         8.19        13.12        13.02        10.39        99.06 
TCGA-S9-A7R8 TCGA-S9-A89V TCGA-TM-A7C3 TCGA-TM-A84I TCGA-TM-A84Q TCGA-VM-A8CB 
       31.59        18.71        49.45        28.08        25.38         0.10 
TCGA-VM-A8CD TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-WY-A858 TCGA-WY-A85B 
        7.89        37.05        16.01        23.21        43.96        45.80 

$`DEL PEAK 35(14Q24.2) WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0009 TCGA-02-0014 TCGA-02-0015 
       11.77         4.73        18.35        10.59        82.59        20.61 
TCGA-02-0021 TCGA-02-0023 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0037 
       77.65        20.12        12.16        90.58         2.83         3.62 
TCGA-02-0038 TCGA-02-0043 TCGA-02-0046 TCGA-02-0052 TCGA-02-0054 TCGA-02-0057 
       10.72        18.31         6.87        12.59         6.54        19.86 
TCGA-02-0059 TCGA-02-0064 TCGA-02-0068 TCGA-02-0070 TCGA-02-0071 TCGA-02-0075 
        9.57        19.73        26.43        25.05         5.49        20.84 
TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0087 
       27.25        89.72        22.72        12.62        51.32        57.76 
TCGA-02-0089 TCGA-02-0102 TCGA-02-0106 TCGA-02-0111 TCGA-02-0114 TCGA-02-0115 
       16.96        27.02        11.67        23.18        99.98        15.65 
TCGA-02-0116 TCGA-02-0260 TCGA-02-0269 TCGA-02-0271 TCGA-02-0285 TCGA-02-0289 
       48.95        16.93        10.75        14.47        13.87        14.20 
TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0326 TCGA-02-0333 TCGA-02-0337 
       15.95        12.23         9.90         7.33         4.37        25.12 
TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0440 TCGA-02-0451 
       10.59        12.39        14.50        10.55        11.34        16.21 
TCGA-02-2470 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 
       12.92        15.45        20.32         2.70         6.15        20.38 
TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 
       47.61         6.94         3.98        25.35        14.30        26.70 
TCGA-06-0139 TCGA-06-0140 TCGA-06-0142 TCGA-06-0145 TCGA-06-0147 TCGA-06-0148 
       11.90         0.20         2.20         2.33        17.79        10.09 
TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0157 
        8.61        19.46        46.59        12.33        13.94         3.19 
TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0164 TCGA-06-0165 TCGA-06-0168 
       10.82         9.44        11.80        56.91        10.65        19.66 
TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 
        3.29         4.47         3.22         4.04        91.00         4.18 
TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 
       88.14        20.25         3.65        69.90        73.84        27.22 
TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 
       15.42        10.42        38.96         7.40         5.56         0.39 
TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 
        7.66         8.42         7.63         7.40        11.84         0.53 
TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 
       13.64        13.32        20.42        10.82         9.01         0.26 
TCGA-06-0413 TCGA-06-0414 TCGA-06-0645 TCGA-06-0648 TCGA-06-0650 TCGA-06-0686 
        3.16        35.11         5.75         9.80        23.57        14.20 
TCGA-06-0743 TCGA-06-0744 TCGA-06-0747 TCGA-06-0749 TCGA-06-0877 TCGA-06-0879 
       26.40        46.88         2.70         2.70         5.65        40.41 
TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1087 
       16.57        20.78        26.76        23.93         6.84         4.04 
TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-1806 
       26.79        11.84        15.32        13.61        33.90        15.32 
TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 
        1.08        12.49         4.93        12.56        30.64         5.95 
TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5410 
       16.64         5.98         4.37         0.43        31.50         3.55 
TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5418 TCGA-06-5858 
        4.54         8.81         8.98         8.55         2.73         6.15 
TCGA-06-6388 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6698 
        5.23         1.48       120.56         7.36         8.32         4.77 
TCGA-06-6700 TCGA-06-6701 TCGA-06-A5U0 TCGA-06-A6S0 TCGA-06-A7TK TCGA-08-0244 
        4.77         4.96         4.70         3.12         5.39        22.68 
TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 
        4.18       115.86         1.74         8.42        25.71        12.16 
TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 
        9.80        29.23        65.33         1.28         8.42        17.95 
TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 
       24.56        31.10        37.58        22.29         3.39        12.23 
TCGA-08-0386 TCGA-08-0389 TCGA-08-0509 TCGA-08-0510 TCGA-08-0514 TCGA-08-0516 
       18.02        15.35        12.56         4.27        11.08        19.59 
TCGA-08-0518 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 
       19.33         4.80         7.27        15.98        18.41         7.56 
TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0656 TCGA-12-0657 TCGA-12-0670 
       12.99        34.92        10.45        94.78         0.10        25.97 
TCGA-12-0688 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 
       26.66        20.38        28.41        15.06        53.85        43.23 
TCGA-12-0775 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 
        7.63        14.93        14.86        91.76        24.79        18.48 
TCGA-12-0822 TCGA-12-0826 TCGA-12-0828 TCGA-12-0829 TCGA-12-1090 TCGA-12-1093 
       23.51        27.78         8.94        20.58         7.59        15.98 
TCGA-12-1094 TCGA-12-1095 TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 TCGA-12-1599 
       12.23        15.85        14.53         3.98         4.14        25.68 
TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 
       59.77        44.02        26.93        15.22        10.95        34.92 
TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 
        3.22         2.04        11.97         0.95        23.05         2.24 
TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 TCGA-14-0866 TCGA-14-0867 TCGA-14-0871 
       11.24        13.78         3.25        26.33         2.04        28.93 
TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1402 TCGA-14-1450 
       15.95        19.30         0.79         1.38        32.05        58.78 
TCGA-14-1451 TCGA-14-1452 TCGA-14-1454 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 
       23.11         7.10        30.18        40.96         6.67        12.43 
TCGA-14-1794 TCGA-14-1795 TCGA-14-1827 TCGA-14-2554 TCGA-14-2555 TCGA-15-0742 
        0.99         1.97         5.88        17.49         7.96        13.78 
TCGA-15-1444 TCGA-15-1446 TCGA-15-1449 TCGA-16-0846 TCGA-16-0849 TCGA-16-0850 
       50.53        19.10        13.28         3.91        26.07        16.37 
TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 
        4.57        10.29        14.01         9.14        21.24        13.97 
TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 TCGA-19-0963 TCGA-19-0964 
        6.41        11.77        21.90         8.61        14.27         3.39 
TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 TCGA-19-1392 TCGA-19-1786 
       10.75         9.07         5.95        12.95         3.65         7.17 
TCGA-19-1787 TCGA-19-1789 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2624 
       12.66         3.25         9.67         4.87         1.08         0.16 
TCGA-19-2631 TCGA-19-4065 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 
        7.00         7.04        17.19         8.02        18.90         4.73 
TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 TCGA-19-A60I TCGA-19-A6J5 
       12.10         1.78        14.07        16.80        17.79        28.54 
TCGA-26-1438 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5135 
       10.03        31.33         7.13         9.37         9.40         8.88 
TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-26-A7UX TCGA-27-1830 
       18.97         1.58         7.92         2.33        19.33         5.06 
TCGA-27-1831 TCGA-27-1833 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 
       16.60        24.23        30.05        14.04        11.51        24.76 
TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2528 TCGA-28-1746 
       10.39        16.08         7.59         2.86        15.78         0.20 
TCGA-28-1747 TCGA-28-1749 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 
        2.53         9.21         7.63         8.48         1.22         1.55 
TCGA-28-1757 TCGA-28-2502 TCGA-28-2513 TCGA-28-5204 TCGA-28-5208 TCGA-28-5209 
        0.13         0.66         7.30        14.93        17.88        14.53 
TCGA-28-5211 TCGA-28-5214 TCGA-28-5218 TCGA-28-5219 TCGA-28-6450 TCGA-32-1970 
       11.77        23.44         5.16        22.68         5.42        15.39 
TCGA-32-1973 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1982 TCGA-32-1986 
       21.07         0.10        15.85        19.50         4.67        12.69 
TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2495 TCGA-32-2632 TCGA-32-2638 
       14.86        16.93        12.23        15.02         8.84        25.18 
TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 
        3.72        12.59        19.86        10.85        19.23         0.85 
TCGA-41-2572 TCGA-41-3393 TCGA-41-3915 TCGA-41-5651 TCGA-41-6646 TCGA-4W-AA9S 
       13.35         4.44        11.84        15.12        12.46         4.14 
TCGA-4W-AA9T TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 
       14.76         3.45        20.91         4.34        14.33         8.22 
TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4931 TCGA-76-4935 TCGA-76-6191 
        7.50         4.80         4.54         9.17        10.78        16.70 
TCGA-76-6192 TCGA-76-6280 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 
        3.29        11.38        20.98         4.83         5.03         0.23 
TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        9.27         7.73         7.79         1.61        17.72        26.30 
TCGA-RR-A6KA TCGA-RR-A6KC TCGA-CS-4943 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 
        6.28        20.55        18.15        64.64        40.18         0.10 
TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 
       21.01         9.96         6.38        17.69        23.84        17.95 
TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 
       12.43         8.48         7.56         7.40         6.61       122.73 
TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 
       81.96        75.25        47.93        72.92        50.86        50.17 
TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD 
       36.56        78.28        46.42        30.21        46.72        39.78 
TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64P TCGA-DB-A64Q 
       37.45        33.57        72.95        31.63        30.12         5.98 
TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X 
       31.40        27.45        27.81        29.23        14.40        18.51 
TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5141 
       12.10        11.24        17.88        30.74        16.18        31.82 
TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G 
        8.02        30.21        42.05        27.81        17.19        17.19 
TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5849 
       54.25        13.12        13.38         3.45        18.61        14.56 
TCGA-DU-5851 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5874 
       17.46        13.38         8.45       182.33        18.94        15.16 
TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6400 TCGA-DU-6401 
      211.17        52.11        22.42        49.02         1.22        87.45 
TCGA-DU-6402 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6410 
        7.04       133.74        19.89        16.83        94.52         7.96 
TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7011 TCGA-DU-7013 TCGA-DU-7014 TCGA-DU-7015 
      156.23       138.28       105.21         8.84       117.40        90.77 
TCGA-DU-7018 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 
       30.67         7.96        94.32        44.02        62.01        25.91 
TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 
       23.31        41.98         2.76        14.60        20.68        21.40 
TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS 
       16.96        15.48        14.17        14.24        12.59        15.12 
TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 
        4.96         3.65         5.65        12.20         8.65         2.70 
TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A76K TCGA-DU-A76O TCGA-DU-A7T6 TCGA-DU-A7T8 
       77.98         7.23        11.41         7.13        17.98       124.50 
TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ 
       77.88        42.31        23.51         7.50        44.42         0.56 
TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-A7YO TCGA-E1-A7YW 
       50.14        67.46       134.27        78.21        75.02        36.82 
TCGA-E1-A7Z6 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5964 TCGA-FG-5965 
       32.35         0.23         0.20        47.77        34.36        36.82 
TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 
       18.77        14.93        24.99        23.97        18.44        15.35 
TCGA-FG-7636 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 
       17.88        22.55        20.61        12.95        13.68        14.24 
TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-A4MU TCGA-FG-A4MW 
       16.01        20.09        14.96        22.52        10.72        18.38 
TCGA-FG-A4MX TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 
       18.71        14.76        17.82        16.41        15.02        16.44 
TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N 
       28.54        10.78        36.66        48.69        20.45        13.58 
TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 
        5.72        27.52         0.10         6.67        11.54        40.11 
TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 
        0.13         0.03        16.54         3.75        17.42         6.54 
TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 
        6.38        40.34        75.19        95.93       106.95       172.77 
TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7607 
        4.01         5.03        29.85       122.47         4.57         3.16 
TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7620 TCGA-HT-7676 
       22.06        45.99        56.09        57.60        14.27         0.16 
TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 
       16.24         0.76        44.68         6.05        42.74         0.10 
TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 
        0.10         0.10         2.96        17.52         6.90        14.53 
TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7860 TCGA-HT-7873 
       39.48        19.23        39.09         0.23         0.49        23.61 
TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 
       37.15         0.33         0.13         3.68         5.33        35.47 
TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 
        3.72        11.28         1.64        16.24         9.40        63.55 
TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 
        0.10        37.87        33.01        12.23         6.25         0.10 
TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 
        0.46         2.50         5.56         0.23        29.59        34.19 
TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB 
       26.04         0.13        20.22         0.07        27.35         0.10 
TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A616 TCGA-HT-A61B TCGA-HT-A74H TCGA-HT-A74J 
        5.33         2.70         1.81        17.52         2.43        10.52 
TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7490 
       15.35        11.05         0.10        29.92        19.89        19.23 
TCGA-HW-7491 TCGA-HW-7493 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 
       40.18        35.90         4.31        21.70        21.60        19.59 
TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-KT-A74X 
       17.82        20.35        20.81        20.71        19.00        14.40 
TCGA-KT-A7W1 TCGA-P5-A5EW TCGA-P5-A5EY TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F4 
       14.40         6.71         2.37         4.11         5.88         0.76 
TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 
        1.28         0.16        10.42        13.25        11.64         0.20 
TCGA-P5-A731 TCGA-P5-A733 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X 
        9.01        13.61        15.16         2.53        12.62        15.85 
TCGA-QH-A65Z TCGA-QH-A6CU TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6X3 TCGA-QH-A6X5 
       14.04        14.83        12.23         2.20        10.29        16.34 
TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 
       16.73         1.91        16.50         5.03        11.08        12.99 
TCGA-R8-A6ML TCGA-R8-A6MO TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A843 TCGA-RY-A845 
       94.03        32.65        30.87         5.46         2.07        19.59 
TCGA-RY-A847 TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY 
       30.67        87.12        18.77        37.84        34.49        31.33 
TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 
       28.70        22.95        17.62        23.64        32.61        16.08 
TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WE TCGA-S9-A6WG 
       98.24        95.93         5.85       106.39        72.59        80.12 
TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WQ 
       32.45        84.99        31.10        15.91        18.61        14.07 
TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J2 TCGA-S9-A7J3 
       36.13         7.92        23.51         7.13         2.04        17.03 
TCGA-S9-A7QW TCGA-S9-A7QY TCGA-S9-A7R1 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A89Z 
       15.06        28.37       169.84        30.05        98.63        11.97 
TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C 
       48.33        49.32        34.78        48.39        24.92        16.18 
TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M 
       59.05        40.64        30.44        24.16        40.83        24.79 
TCGA-TM-A84O TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RH TCGA-TQ-A7RW 
       33.24        18.61        14.93        23.80        15.98        26.99 
TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CE TCGA-VM-A8CH TCGA-VW-A8FI 
       43.04        30.08        13.51        35.93        23.47         8.05 
TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85C TCGA-WY-A85D 
       51.06        13.32        39.88        43.40        46.88        37.71 
TCGA-WY-A85E 
       20.81 

  DEL PEAK 35(14Q24.2) MUTATED DEL PEAK 35(14Q24.2) WILD-TYPE 
                          0.10                           0.03 
  DEL PEAK 35(14Q24.2) MUTATED DEL PEAK 35(14Q24.2) WILD-TYPE 
                        130.78                         211.17 
  DEL PEAK 35(14Q24.2) MUTATED DEL PEAK 35(14Q24.2) WILD-TYPE 
                         14.53                          14.93 
[1] "0.1 - 130.8 (14.5)" "0.0 - 211.2 (14.9)"
[1] "hr=" "1.3"
D67V2, continuous
D67V3, binary
                                cls
clus                               0   1
  DEL PEAK 35(14Q24.2) MUTATED   171 106
  DEL PEAK 35(14Q24.2) WILD-TYPE 399 366
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 35(14Q24.2) MUTATED    171  106
  DEL PEAK 35(14Q24.2) WILD-TYPE  399  366
                        clus
vv                       DEL PEAK 35(14Q24.2) MUTATED
  BRAIN                                           171
  CENTRAL NERVOUS SYSTEM                          106
                        clus
vv                       DEL PEAK 35(14Q24.2) WILD-TYPE
  BRAIN                                             399
  CENTRAL NERVOUS SYSTEM                            366
[1] 2 2
[1] FALSE
D67V4, binary
                                cls
clus                               0   1
  DEL PEAK 35(14Q24.2) MUTATED   127 150
  DEL PEAK 35(14Q24.2) WILD-TYPE 303 462
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 35(14Q24.2) MUTATED    127  150
  DEL PEAK 35(14Q24.2) WILD-TYPE  303  462
        clus
vv       DEL PEAK 35(14Q24.2) MUTATED DEL PEAK 35(14Q24.2) WILD-TYPE
  FEMALE                          127                            303
  MALE                            150                            462
[1] 2 2
[1] FALSE
D67V5, continuous
                                vv
clus                             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  DEL PEAK 35(14Q24.2) MUTATED            48                             5
  DEL PEAK 35(14Q24.2) WILD-TYPE         128                            22
                                vv
clus                             OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  DEL PEAK 35(14Q24.2) MUTATED                 25                33
  DEL PEAK 35(14Q24.2) WILD-TYPE               93               145
                                vv
clus                             TREATED PRIMARY GBM
  DEL PEAK 35(14Q24.2) MUTATED                     7
  DEL PEAK 35(14Q24.2) WILD-TYPE                  11
                                vv
clus                             UNTREATED PRIMARY (DE NOVO) GBM
  DEL PEAK 35(14Q24.2) MUTATED                               159
  DEL PEAK 35(14Q24.2) WILD-TYPE                             366
D67V6, multiclass
                                 clus
vv                                DEL PEAK 35(14Q24.2) MUTATED
  ASTROCYTOMA                                               48
  GLIOBLASTOMA MULTIFORME (GBM)                              5
  OLIGOASTROCYTOMA                                          25
  OLIGODENDROGLIOMA                                         33
  TREATED PRIMARY GBM                                        7
  UNTREATED PRIMARY (DE NOVO) GBM                          159
                                 clus
vv                                DEL PEAK 35(14Q24.2) WILD-TYPE
  ASTROCYTOMA                                                128
  GLIOBLASTOMA MULTIFORME (GBM)                               22
  OLIGOASTROCYTOMA                                            93
  OLIGODENDROGLIOMA                                          145
  TREATED PRIMARY GBM                                         11
  UNTREATED PRIMARY (DE NOVO) GBM                            366
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D67V7, binary
                                cls
clus                               0   1
  DEL PEAK 35(14Q24.2) MUTATED   141 136
  DEL PEAK 35(14Q24.2) WILD-TYPE 333 432
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 35(14Q24.2) MUTATED    141  136
  DEL PEAK 35(14Q24.2) WILD-TYPE  333  432
     clus
vv    DEL PEAK 35(14Q24.2) MUTATED DEL PEAK 35(14Q24.2) WILD-TYPE
  NO                           141                            333
  YES                          136                            432
[1] 2 2
[1] FALSE
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 35(14Q24.2) MUTATED                                  1     8
  DEL PEAK 35(14Q24.2) WILD-TYPE                                0    13
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 35(14Q24.2) MUTATED                          20   239
  DEL PEAK 35(14Q24.2) WILD-TYPE                        44   683
D67V8, multiclass
                                  clus
vv                                 DEL PEAK 35(14Q24.2) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            1
  ASIAN                                                       8
  BLACK OR AFRICAN AMERICAN                                  20
  WHITE                                                     239
                                  clus
vv                                 DEL PEAK 35(14Q24.2) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              0
  ASIAN                                                        13
  BLACK OR AFRICAN AMERICAN                                    44
  WHITE                                                       683
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D67V9, binary
                                cls
clus                               0   1
  DEL PEAK 35(14Q24.2) MUTATED     6 233
  DEL PEAK 35(14Q24.2) WILD-TYPE  24 658
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 35(14Q24.2) MUTATED      6  233
  DEL PEAK 35(14Q24.2) WILD-TYPE   24  658
                        clus
vv                       DEL PEAK 35(14Q24.2) MUTATED
  HISPANIC OR LATINO                                6
  NOT HISPANIC OR LATINO                          233
                        clus
vv                       DEL PEAK 35(14Q24.2) WILD-TYPE
  HISPANIC OR LATINO                                 24
  NOT HISPANIC OR LATINO                            658
[1] 2 2
[1] FALSE

Clustering(68) Variable = DEL PEAK 36(14Q31.3) MUTATION ANALYSIS
D68V1, survival
                                sevent
clus2                              0   1
  DEL PEAK 36(14Q31.3) MUTATED   100 160
  DEL PEAK 36(14Q31.3) WILD-TYPE 380 399
  DEL PEAK 36(14Q31.3) MUTATED DEL PEAK 36(14Q31.3) WILD-TYPE 
                           260                            779 
  DEL PEAK 36(14Q31.3) MUTATED DEL PEAK 36(14Q31.3) WILD-TYPE 
                           160                            399 
$`DEL PEAK 36(14Q31.3) MUTATED`
TCGA-02-0007 TCGA-02-0010 TCGA-02-0011 TCGA-02-0024 TCGA-02-0025 TCGA-02-0034 
       23.18        35.41        20.71        53.10        42.74        14.14 
TCGA-02-0039 TCGA-02-0047 TCGA-02-0048 TCGA-02-0051 TCGA-02-0055 TCGA-02-0058 
       10.52        14.73         3.22        15.09         2.50         8.35 
TCGA-02-0060 TCGA-02-0069 TCGA-02-0074 TCGA-02-0086 TCGA-02-0089 TCGA-02-0099 
        6.02        28.70        10.19         8.81        16.96         3.48 
TCGA-02-0107 TCGA-02-0113 TCGA-02-0258 TCGA-02-0266 TCGA-02-0281 TCGA-02-0324 
       17.65        92.65        16.54        17.72         3.98         7.73 
TCGA-02-0325 TCGA-02-0330 TCGA-02-0332 TCGA-02-0432 TCGA-02-0446 TCGA-02-0456 
       10.62        15.91        25.71        47.11         9.27         3.35 
TCGA-02-2466 TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0138 TCGA-06-0141 
       16.80        22.72        33.67        12.95        24.23        10.29 
TCGA-06-0143 TCGA-06-0146 TCGA-06-0162 TCGA-06-0166 TCGA-06-0171 TCGA-06-0188 
       11.74        20.09         3.42         5.85        13.12        44.58 
TCGA-06-0194 TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 TCGA-06-0241 TCGA-06-0409 
        4.67        24.16         0.72        19.82        48.69        72.36 
TCGA-06-0410 TCGA-06-0412 TCGA-06-0644 TCGA-06-0646 TCGA-06-0649 TCGA-06-0745 
        4.70         9.57        12.62         5.75         2.10         7.86 
TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0878 TCGA-06-1084 TCGA-06-1804 
        0.92        43.46        46.19         7.17        23.93        13.61 
TCGA-06-2561 TCGA-06-5411 TCGA-06-5416 TCGA-06-5856 TCGA-06-5859 TCGA-06-6389 
       17.65         8.35         6.71         3.75         4.57         7.79 
TCGA-06-6390 TCGA-06-6697 TCGA-06-6699 TCGA-06-A5U1 TCGA-06-A6S1 TCGA-06-A7TL 
        5.39        12.85         1.55         1.87         2.56         5.42 
TCGA-08-0245 TCGA-08-0380 TCGA-08-0390 TCGA-08-0392 TCGA-08-0512 TCGA-08-0517 
       37.84        14.93        13.97         0.72        42.15        58.68 
TCGA-08-0520 TCGA-12-0615 TCGA-12-0616 TCGA-12-0654 TCGA-12-0662 TCGA-12-0691 
       10.75        15.35        14.73         7.59        38.17        12.13 
TCGA-12-0692 TCGA-12-0776 TCGA-12-0821 TCGA-12-0827 TCGA-12-1088 TCGA-12-1089 
        3.65         9.73        10.62        38.76       127.59         5.82 
TCGA-12-1091 TCGA-12-1092 TCGA-12-1096 TCGA-12-1598 TCGA-12-1602 TCGA-12-3651 
       33.21        21.73         9.11        15.65         6.77        12.69 
TCGA-12-3652 TCGA-12-5295 TCGA-14-0736 TCGA-14-0783 TCGA-14-0813 TCGA-14-0817 
       34.92        14.93        15.12         6.21         1.35         5.39 
TCGA-14-0862 TCGA-14-0865 TCGA-14-1396 TCGA-14-1453 TCGA-14-1455 TCGA-14-1821 
        2.89        16.50         1.12         1.15         0.92        17.79 
TCGA-14-1823 TCGA-14-1829 TCGA-14-3477 TCGA-14-4157 TCGA-16-0861 TCGA-16-1045 
       17.85         7.17         3.78         3.42         4.31        29.03 
TCGA-19-1389 TCGA-19-1390 TCGA-19-1791 TCGA-19-2623 TCGA-19-2629 TCGA-19-5947 
        4.64        25.38         0.13         7.53        24.23         6.64 
TCGA-19-5956 TCGA-19-5960 TCGA-19-A6J4 TCGA-19-A6J5 TCGA-26-1439 TCGA-26-1440 
       22.49        14.96         3.98        28.54        13.87         9.73 
TCGA-26-5133 TCGA-26-5134 TCGA-27-1832 TCGA-27-1834 TCGA-27-2519 TCGA-27-2527 
       14.86         5.49         9.86        40.54        10.39        14.40 
TCGA-28-1750 TCGA-28-1756 TCGA-28-2506 TCGA-28-2509 TCGA-28-2514 TCGA-28-5207 
        8.35         2.83         6.74         4.77         5.26        11.28 
TCGA-28-5213 TCGA-28-5215 TCGA-28-5216 TCGA-28-5220 TCGA-32-1976 TCGA-32-1980 
       31.27        11.01        13.64        12.76         0.49         1.18 
TCGA-32-2615 TCGA-32-2616 TCGA-32-2634 TCGA-32-4208 TCGA-41-2573 TCGA-41-2575 
       15.95         7.36        22.78        21.14         8.94         9.53 
TCGA-41-3392 TCGA-41-4097 TCGA-76-4928 TCGA-76-4929 TCGA-76-4934 TCGA-76-6193 
        0.99         0.20         3.09         3.65         2.53         2.70 
TCGA-76-6282 TCGA-76-6285 TCGA-OX-A56R TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 
       17.06         8.35         5.92         4.70         7.69        43.89 
TCGA-CS-6668 TCGA-DB-5279 TCGA-DB-A4XA TCGA-DB-A64L TCGA-DB-A64O TCGA-DH-5140 
        8.02        44.52        18.84        24.20        25.48        19.96 
TCGA-DH-5142 TCGA-DH-5143 TCGA-DU-5847 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5855 
       30.31        14.40        18.02        17.46         6.74         6.81 
TCGA-DU-5872 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6403 TCGA-DU-6408 
       17.49        75.16        46.06        65.75        11.64       114.08 
TCGA-DU-6542 TCGA-DU-7007 TCGA-DU-7010 TCGA-DU-7012 TCGA-DU-7290 TCGA-DU-7298 
        7.73        62.96        14.99         6.54        10.36        18.94 
TCGA-DU-7302 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8165 TCGA-DU-A6S8 TCGA-DU-A76L 
       60.30         5.10        23.74        19.13         5.98        26.76 
TCGA-DU-A76R TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5322 TCGA-E1-A7YV 
       21.30        41.13        79.99        57.93       130.78        32.45 
TCGA-EZ-7264 TCGA-FG-5963 TCGA-FG-7643 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MY 
       14.33        25.48        20.09        32.61        38.27        23.70 
TCGA-FG-A6J3 TCGA-HT-7477 TCGA-HT-7606 TCGA-HT-7616 TCGA-HT-7688 TCGA-HT-7689 
       22.26        24.26        17.29         0.23        31.69        14.96 
TCGA-HT-7902 TCGA-HT-8110 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A615 
       31.43        13.78        28.27        15.72         0.23        16.93 
TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A61C TCGA-HW-7489 TCGA-HW-A5KK TCGA-IK-8125 
       16.14        16.83        17.65         8.32        12.76        42.77 
TCGA-P5-A5EV TCGA-P5-A5EX TCGA-P5-A5EZ TCGA-P5-A5F2 TCGA-QH-A6CS TCGA-QH-A6CV 
        0.23         1.64         2.30         7.63        19.33        14.53 
TCGA-QH-A6CW TCGA-QH-A6CZ TCGA-QH-A6X4 TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A73M 
       13.61         9.17        14.53        12.99        88.83        59.38 
TCGA-RY-A83Z TCGA-RY-A840 TCGA-S9-A6TS TCGA-S9-A6WD TCGA-S9-A6WM TCGA-S9-A6WP 
        9.90        28.08        62.17        69.50        19.86        15.16 
TCGA-S9-A7IX TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7QX TCGA-S9-A7QZ TCGA-S9-A7R2 
       22.32         7.13        20.02        13.12        13.02        10.39 
TCGA-S9-A7R3 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-TM-A7C3 TCGA-TM-A84I TCGA-TM-A84Q 
       99.06        31.59        18.71        49.45        28.08        25.38 
TCGA-TQ-A7RW TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS 
       26.99         0.10         7.89        37.05        16.01        23.21 
TCGA-WY-A858 TCGA-WY-A85B 
       43.96        45.80 

$`DEL PEAK 36(14Q31.3) WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0009 TCGA-02-0014 TCGA-02-0015 
       11.77         4.73        18.35        10.59        82.59        20.61 
TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 
       87.06        77.65        20.12        24.59        12.16        90.58 
TCGA-02-0033 TCGA-02-0037 TCGA-02-0038 TCGA-02-0043 TCGA-02-0046 TCGA-02-0052 
        2.83         3.62        10.72        18.31         6.87        12.59 
TCGA-02-0054 TCGA-02-0057 TCGA-02-0059 TCGA-02-0064 TCGA-02-0068 TCGA-02-0070 
        6.54        19.86         9.57        19.73        26.43        25.05 
TCGA-02-0071 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 
        5.49        20.84        27.25        89.72        22.72        12.62 
TCGA-02-0085 TCGA-02-0087 TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0111 
       51.32        57.76        27.02        65.00        11.67        23.18 
TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0260 TCGA-02-0269 TCGA-02-0271 
       99.98        15.65        48.95        16.93        10.75        14.47 
TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0326 
       13.87        14.20        15.95        12.23         9.90         7.33 
TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 
        4.37        25.12        10.59        12.39        14.50        10.55 
TCGA-02-0440 TCGA-02-0451 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 
       11.34        16.21        12.92        15.32        15.45        20.32 
TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 
        2.70         6.15        20.38        47.61         6.94         3.98 
TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0139 TCGA-06-0140 TCGA-06-0142 
       25.35        14.30        26.70        11.90         0.20         2.20 
TCGA-06-0145 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 
        2.33        17.79        10.09         8.61        19.46        46.59 
TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 
       12.33        13.94        10.45         3.19        10.82         9.44 
TCGA-06-0160 TCGA-06-0164 TCGA-06-0165 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 
       11.80        56.91        10.65        19.66         3.29         4.47 
TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 
        3.22         4.04        91.00         4.18        88.14        20.25 
TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0189 TCGA-06-0190 
        3.65        69.90        73.84        27.22        15.42        10.42 
TCGA-06-0192 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 
       38.96         7.40         5.56         0.39         7.66         8.42 
TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0237 
        7.63         7.40        11.84         0.53        15.02        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0413 
       13.32        20.42        10.82         9.01         0.26         3.16 
TCGA-06-0414 TCGA-06-0645 TCGA-06-0648 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 
       35.11         5.75         9.80        23.57        14.20        26.40 
TCGA-06-0744 TCGA-06-0747 TCGA-06-0749 TCGA-06-0877 TCGA-06-0879 TCGA-06-0881 
       46.88         2.70         2.70         5.65        40.41        16.57 
TCGA-06-0882 TCGA-06-0939 TCGA-06-1086 TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 
       20.78        26.76         6.84         4.04        26.79        11.84 
TCGA-06-1802 TCGA-06-1805 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 
       15.32        33.90        15.32         1.08        12.49         4.93 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 
       12.56        30.64         5.95        16.64         5.98         4.37 
TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5412 TCGA-06-5413 
        0.43        31.50        11.74         3.55         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5418 TCGA-06-5858 TCGA-06-6388 TCGA-06-6391 
        8.98         8.55         2.73         6.15         5.23         1.48 
TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6698 TCGA-06-6700 TCGA-06-6701 
      120.56         7.36         8.32         4.77         4.77         4.96 
TCGA-06-A5U0 TCGA-06-A6S0 TCGA-06-A7TK TCGA-08-0244 TCGA-08-0246 TCGA-08-0344 
        4.70         3.12         5.39        22.68         4.18       115.86 
TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 
        1.74         8.42        25.71        12.16         9.80        29.23 
TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 
       65.33         1.28         8.42        17.95        24.56        31.10 
TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0386 TCGA-08-0389 
       37.58        22.29         3.39        12.23        18.02        15.35 
TCGA-08-0509 TCGA-08-0510 TCGA-08-0514 TCGA-08-0516 TCGA-08-0518 TCGA-08-0521 
       12.56         4.27        11.08        19.59        19.33         4.80 
TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0618 TCGA-12-0619 
        7.27        15.98        18.41         7.56        12.99        34.92 
TCGA-12-0620 TCGA-12-0656 TCGA-12-0657 TCGA-12-0670 TCGA-12-0688 TCGA-12-0703 
       10.45        94.78         0.10        25.97        26.66        20.38 
TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0778 
       28.41        15.06        53.85        43.23         7.63        14.93 
TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0822 TCGA-12-0826 
       14.86        91.76        24.79        18.48        23.51        27.78 
TCGA-12-0828 TCGA-12-0829 TCGA-12-1090 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 
        8.94        20.58         7.59        15.98        12.23        15.85 
TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 TCGA-12-1599 TCGA-12-1600 TCGA-12-3644 
       14.53         3.98         4.14        25.68        14.73        59.77 
TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3653 TCGA-12-5299 
       44.02        26.93        15.22        10.95        14.53         3.22 
TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 
        2.04        11.97         0.95        23.05         2.24        11.24 
TCGA-14-0790 TCGA-14-0812 TCGA-14-0866 TCGA-14-0867 TCGA-14-0871 TCGA-14-1034 
       13.78         3.25        26.33         2.04        28.93        15.95 
TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 
       19.30         0.79         1.38         3.75        32.05        58.78 
TCGA-14-1451 TCGA-14-1452 TCGA-14-1454 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 
       23.11         7.10        30.18        40.96         6.67        12.43 
TCGA-14-1794 TCGA-14-1795 TCGA-14-1825 TCGA-14-1827 TCGA-14-2554 TCGA-14-2555 
        0.99         1.97         7.63         5.88        17.49         7.96 
TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 TCGA-15-1447 TCGA-15-1449 TCGA-16-0846 
       13.78        50.53        19.10        53.19        13.28         3.91 
TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 
       17.59        26.07        16.37         4.57        10.29        14.01 
TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 
        9.14        21.24        13.97         6.41        11.77        21.90 
TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 
        8.61         0.66        14.27         3.39        10.75         9.07 
TCGA-19-1387 TCGA-19-1388 TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 
        5.95        12.95         3.65         7.17        12.66         3.25 
TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2624 TCGA-19-2625 TCGA-19-2631 
        9.67         4.87         1.08         0.16         4.08         7.00 
TCGA-19-4065 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 
        7.04        17.19         8.02        18.90         4.73        12.10 
TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 TCGA-19-A60I TCGA-26-1438 TCGA-26-1442 
        1.78        14.07        16.80        17.79        10.03        31.33 
TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 
        7.13         9.37         9.40         8.88        18.97         1.58 
TCGA-26-6173 TCGA-26-6174 TCGA-26-A7UX TCGA-27-1830 TCGA-27-1831 TCGA-27-1833 
        7.92         2.33        19.33         5.06        16.60        24.23 
TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2521 
       21.30        30.05        14.04        11.51        24.76        10.39 
TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 
       16.08         7.59         2.86        15.78         0.20         2.53 
TCGA-28-1749 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1757 
        9.21         7.63         8.48         1.22         1.55         0.13 
TCGA-28-2502 TCGA-28-2513 TCGA-28-5204 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 
        0.66         7.30        14.93        17.88        14.53        11.77 
TCGA-28-5214 TCGA-28-5218 TCGA-28-5219 TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 
       23.44         5.16        22.68         5.42        15.39        21.07 
TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 
        0.10        15.85        19.50         4.67        12.69        14.86 
TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2632 TCGA-32-2638 
       16.93        12.23        20.78        15.02         8.84        25.18 
TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 
        3.72        12.59        19.86        10.85        19.23         0.85 
TCGA-41-2572 TCGA-41-3393 TCGA-41-3915 TCGA-41-5651 TCGA-41-6646 TCGA-4W-AA9S 
       13.35         4.44        11.84        15.12        12.46         4.14 
TCGA-4W-AA9T TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 
       14.76         3.45        20.91         4.34        14.33         8.22 
TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4931 TCGA-76-4935 TCGA-76-6191 
        7.50         4.80         4.54         9.17        10.78        16.70 
TCGA-76-6192 TCGA-76-6280 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 
        3.29        11.38        20.98         4.83         5.03         0.23 
TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        9.27         7.73         7.79         1.61        17.72        26.30 
TCGA-RR-A6KA TCGA-RR-A6KC TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 
        6.28        20.55        18.15        10.62        64.64        40.18 
TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 
        0.10        21.01         9.96         6.38        17.69        23.84 
TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6669 TCGA-CS-6670 
       17.95        12.43         8.48         7.56         7.40         6.61 
TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 
      122.73        81.96        75.25        47.93        72.92        50.86 
TCGA-DB-5278 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XB TCGA-DB-A4XC 
       50.17        36.56        78.28        46.42        30.21        46.72 
TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64P 
       39.78        37.45        33.57        72.95        31.63        30.12 
TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W 
        5.98        31.40        27.45        27.81        29.23        14.40 
TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P 
       18.51        12.10        11.24        17.88        30.74        16.18 
TCGA-DH-5141 TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F 
       31.82         8.02        30.21        42.05        27.81        17.19 
TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV 
       17.19        54.25        13.12        13.38         3.45        18.61 
TCGA-DU-5849 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5874 
       14.56        13.38         8.45       182.33        18.94        15.16 
TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6400 TCGA-DU-6401 
      211.17        52.11        22.42        49.02         1.22        87.45 
TCGA-DU-6402 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6410 
        7.04       133.74        19.89        16.83        94.52         7.96 
TCGA-DU-7006 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7011 TCGA-DU-7013 TCGA-DU-7014 
       11.47       156.23       138.28       105.21         8.84       117.40 
TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7299 
       90.77        30.67        26.30         7.96        94.32        44.02 
TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8162 
       62.01        25.91        23.31        41.98         2.76        14.60 
TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP 
       20.68        21.40        16.96        15.48        14.17        14.24 
TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY 
       12.59        15.12         4.96         3.65         5.65        12.20 
TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A76K TCGA-DU-A76O 
        8.65         2.70        77.98         7.23        11.41         7.13 
TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD 
       17.98       124.50        77.88        42.31        23.51         7.50 
TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5311 TCGA-E1-5318 
       44.42         0.56        50.14        67.46       134.27        78.21 
TCGA-E1-5319 TCGA-E1-A7YO TCGA-E1-A7YW TCGA-E1-A7Z6 TCGA-F6-A8O3 TCGA-F6-A8O4 
       95.57        75.02        36.82        32.35         0.23         0.20 
TCGA-FG-5962 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 
       47.77        34.36        36.82        18.77        14.93        24.99 
TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7638 TCGA-FG-7641 
       23.97        18.44        15.35        17.88        22.55        20.61 
TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 
       12.95        13.68        14.24        16.01        20.09        14.96 
TCGA-FG-8189 TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A60J TCGA-FG-A60K 
       22.52        10.72        18.38        18.71        14.76        17.82 
TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 
       16.41        15.02        16.44        28.54        10.78        36.66 
TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 
       48.69        20.45        13.58         5.72        27.52         0.10 
TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 
        6.67        11.54        40.11         0.13         0.03        16.54 
TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 
        3.75        17.42         6.54         6.38        40.34        75.19 
TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 
       95.93       106.95       172.77         4.01         5.03        29.85 
TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 
       23.18       122.47         4.57         3.16        22.06        45.99 
TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 
       56.09        57.60        14.27         0.16        16.24         0.76 
TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7690 TCGA-HT-7691 
       44.68         6.05        42.74         0.10         0.10         0.10 
TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 
        2.96        17.52         6.90        14.53        39.48        19.23 
TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 
       39.09         0.23        50.63         0.49        23.61        37.15 
TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 
        0.33         0.13         3.68         5.33        35.47         3.72 
TCGA-HT-7884 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 
       11.28         1.64        16.24         9.40        63.55         0.10 
TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 
       37.87        33.01        12.23         6.25         0.10         0.46 
TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-A4DV 
        2.50         5.56         0.23        29.59        34.19        26.04 
TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC 
        0.13        20.22         0.07        27.35         0.10         5.33 
TCGA-HT-A614 TCGA-HT-A616 TCGA-HT-A619 TCGA-HT-A61B TCGA-HT-A74H TCGA-HT-A74J 
        2.70         1.81        21.40        17.52         2.43        10.52 
TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7490 
       15.35        11.05         0.10        29.92        19.89        19.23 
TCGA-HW-7491 TCGA-HW-7493 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 
       40.18        35.90         4.31        21.70        21.60        19.59 
TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-KT-A74X 
       17.82        20.35        20.81        20.71        19.00        14.40 
TCGA-KT-A7W1 TCGA-P5-A5EW TCGA-P5-A5EY TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F4 
       14.40         6.71         2.37         4.11         5.88         0.76 
TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 
        1.28         0.16        10.42        13.25        11.64         0.20 
TCGA-P5-A731 TCGA-P5-A733 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X 
        9.01        13.61        15.16         2.53        12.62        15.85 
TCGA-QH-A65Z TCGA-QH-A6CU TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6X3 TCGA-QH-A6X5 
       14.04        14.83        12.23         2.20        10.29        16.34 
TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-R8-A6ML 
       16.73         1.91        16.50         5.03        11.08        94.03 
TCGA-R8-A6MO TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 
       32.65        30.87         5.46         2.07        19.59        30.67 
TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ 
       87.12        18.77        37.84        34.49        31.33        28.70 
TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 
       22.95        17.62        23.64        32.61        16.08        98.24 
TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH 
       95.93         5.85       106.39        72.59        80.12        32.45 
TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WQ TCGA-S9-A7IQ 
       84.99        31.10        15.91        18.61        14.07        36.13 
TCGA-S9-A7IS TCGA-S9-A7IY TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW 
        7.92        23.51         8.19         2.04        17.03        15.06 
TCGA-S9-A7QY TCGA-S9-A7R1 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A89Z TCGA-TM-A7C4 
       28.37       169.84        30.05        98.63        11.97        48.33 
TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F 
       49.32        34.78        48.39        24.92        16.18        59.05 
TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O 
       40.64        30.44        24.16        40.83        24.79        33.24 
TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RH TCGA-VM-A8C8 TCGA-VM-A8C9 
       18.61        14.93        23.80        15.98        43.04        30.08 
TCGA-VM-A8CA TCGA-VM-A8CE TCGA-VM-A8CH TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K 
       13.51        35.93        23.47         8.05        51.06        13.32 
TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       39.88        43.40        46.88        37.71        20.81 

  DEL PEAK 36(14Q31.3) MUTATED DEL PEAK 36(14Q31.3) WILD-TYPE 
                          0.10                           0.03 
  DEL PEAK 36(14Q31.3) MUTATED DEL PEAK 36(14Q31.3) WILD-TYPE 
                        130.78                         211.17 
  DEL PEAK 36(14Q31.3) MUTATED DEL PEAK 36(14Q31.3) WILD-TYPE 
                        14.465                         14.930 
[1] "0.1 - 130.8 (14.5)" "0.0 - 211.2 (14.9)"
[1] "hr=" "1.3"
D68V2, continuous
D68V3, binary
                                cls
clus                               0   1
  DEL PEAK 36(14Q31.3) MUTATED   159 102
  DEL PEAK 36(14Q31.3) WILD-TYPE 411 370
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 36(14Q31.3) MUTATED    159  102
  DEL PEAK 36(14Q31.3) WILD-TYPE  411  370
                        clus
vv                       DEL PEAK 36(14Q31.3) MUTATED
  BRAIN                                           159
  CENTRAL NERVOUS SYSTEM                          102
                        clus
vv                       DEL PEAK 36(14Q31.3) WILD-TYPE
  BRAIN                                             411
  CENTRAL NERVOUS SYSTEM                            370
[1] 2 2
[1] FALSE
D68V4, binary
                                cls
clus                               0   1
  DEL PEAK 36(14Q31.3) MUTATED   120 141
  DEL PEAK 36(14Q31.3) WILD-TYPE 310 471
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 36(14Q31.3) MUTATED    120  141
  DEL PEAK 36(14Q31.3) WILD-TYPE  310  471
        clus
vv       DEL PEAK 36(14Q31.3) MUTATED DEL PEAK 36(14Q31.3) WILD-TYPE
  FEMALE                          120                            310
  MALE                            141                            471
[1] 2 2
[1] FALSE
D68V5, continuous
                                vv
clus                             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  DEL PEAK 36(14Q31.3) MUTATED            46                             6
  DEL PEAK 36(14Q31.3) WILD-TYPE         130                            21
                                vv
clus                             OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  DEL PEAK 36(14Q31.3) MUTATED                 26                30
  DEL PEAK 36(14Q31.3) WILD-TYPE               92               148
                                vv
clus                             TREATED PRIMARY GBM
  DEL PEAK 36(14Q31.3) MUTATED                     8
  DEL PEAK 36(14Q31.3) WILD-TYPE                  10
                                vv
clus                             UNTREATED PRIMARY (DE NOVO) GBM
  DEL PEAK 36(14Q31.3) MUTATED                               145
  DEL PEAK 36(14Q31.3) WILD-TYPE                             380
D68V6, multiclass
                                 clus
vv                                DEL PEAK 36(14Q31.3) MUTATED
  ASTROCYTOMA                                               46
  GLIOBLASTOMA MULTIFORME (GBM)                              6
  OLIGOASTROCYTOMA                                          26
  OLIGODENDROGLIOMA                                         30
  TREATED PRIMARY GBM                                        8
  UNTREATED PRIMARY (DE NOVO) GBM                          145
                                 clus
vv                                DEL PEAK 36(14Q31.3) WILD-TYPE
  ASTROCYTOMA                                                130
  GLIOBLASTOMA MULTIFORME (GBM)                               21
  OLIGOASTROCYTOMA                                            92
  OLIGODENDROGLIOMA                                          148
  TREATED PRIMARY GBM                                         10
  UNTREATED PRIMARY (DE NOVO) GBM                            380
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D68V7, binary
                                cls
clus                               0   1
  DEL PEAK 36(14Q31.3) MUTATED   128 133
  DEL PEAK 36(14Q31.3) WILD-TYPE 346 435
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 36(14Q31.3) MUTATED    128  133
  DEL PEAK 36(14Q31.3) WILD-TYPE  346  435
     clus
vv    DEL PEAK 36(14Q31.3) MUTATED DEL PEAK 36(14Q31.3) WILD-TYPE
  NO                           128                            346
  YES                          133                            435
[1] 2 2
[1] FALSE
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 36(14Q31.3) MUTATED                                  1     6
  DEL PEAK 36(14Q31.3) WILD-TYPE                                0    15
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 36(14Q31.3) MUTATED                          22   223
  DEL PEAK 36(14Q31.3) WILD-TYPE                        42   699
D68V8, multiclass
                                  clus
vv                                 DEL PEAK 36(14Q31.3) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            1
  ASIAN                                                       6
  BLACK OR AFRICAN AMERICAN                                  22
  WHITE                                                     223
                                  clus
vv                                 DEL PEAK 36(14Q31.3) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              0
  ASIAN                                                        15
  BLACK OR AFRICAN AMERICAN                                    42
  WHITE                                                       699
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D68V9, binary
                                cls
clus                               0   1
  DEL PEAK 36(14Q31.3) MUTATED     7 219
  DEL PEAK 36(14Q31.3) WILD-TYPE  23 672
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 36(14Q31.3) MUTATED      7  219
  DEL PEAK 36(14Q31.3) WILD-TYPE   23  672
                        clus
vv                       DEL PEAK 36(14Q31.3) MUTATED
  HISPANIC OR LATINO                                7
  NOT HISPANIC OR LATINO                          219
                        clus
vv                       DEL PEAK 36(14Q31.3) WILD-TYPE
  HISPANIC OR LATINO                                 23
  NOT HISPANIC OR LATINO                            672
[1] 2 2
[1] FALSE

Clustering(69) Variable = DEL PEAK 37(15Q14) MUTATION ANALYSIS
D69V1, survival
                              sevent
clus2                            0   1
  DEL PEAK 37(15Q14) MUTATED    63 139
  DEL PEAK 37(15Q14) WILD-TYPE 417 420
  DEL PEAK 37(15Q14) MUTATED DEL PEAK 37(15Q14) WILD-TYPE 
                         202                          837 
  DEL PEAK 37(15Q14) MUTATED DEL PEAK 37(15Q14) WILD-TYPE 
                         139                          420 
$`DEL PEAK 37(15Q14) MUTATED`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0011 TCGA-02-0016 TCGA-02-0024 TCGA-02-0026 
       11.77         4.73        20.71        87.06        53.10        24.59 
TCGA-02-0034 TCGA-02-0038 TCGA-02-0047 TCGA-02-0048 TCGA-02-0054 TCGA-02-0074 
       14.14        10.72        14.73         3.22         6.54        10.19 
TCGA-02-0079 TCGA-02-0084 TCGA-02-0087 TCGA-02-0111 TCGA-02-0113 TCGA-02-0115 
       27.25        12.62        57.76        23.18        92.65        15.65 
TCGA-02-0258 TCGA-02-0269 TCGA-02-0281 TCGA-02-0321 TCGA-02-0324 TCGA-02-2470 
       16.54        10.75         3.98         9.90         7.73        12.92 
TCGA-02-2483 TCGA-06-0119 TCGA-06-0124 TCGA-06-0128 TCGA-06-0129 TCGA-06-0141 
       15.32         2.70        20.38        22.72        33.67        10.29 
TCGA-06-0166 TCGA-06-0174 TCGA-06-0177 TCGA-06-0188 TCGA-06-0190 TCGA-06-0192 
        5.85         3.22         4.18        44.58        10.42        38.96 
TCGA-06-0201 TCGA-06-0209 TCGA-06-0213 TCGA-06-0216 TCGA-06-0237 TCGA-06-0238 
        0.39         7.63         0.53        24.16        13.64        13.32 
TCGA-06-0402 TCGA-06-0410 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 
        0.26         4.70         5.75         5.75         9.80         2.10 
TCGA-06-0686 TCGA-06-0745 TCGA-06-0875 TCGA-06-1801 TCGA-06-2558 TCGA-06-2562 
       14.20         7.86        43.46        11.84        12.49        12.56 
TCGA-06-5413 TCGA-06-5416 TCGA-06-5856 TCGA-06-6694 TCGA-06-A5U1 TCGA-06-A6S0 
        8.81         6.71         3.75         7.36         1.87         3.12 
TCGA-06-A7TK TCGA-06-A7TL TCGA-08-0246 TCGA-08-0344 TCGA-08-0348 TCGA-08-0349 
        5.39         5.42         4.18       115.86        12.16         9.80 
TCGA-08-0351 TCGA-08-0355 TCGA-08-0359 TCGA-08-0386 TCGA-08-0510 TCGA-08-0525 
       65.33        24.56         3.39        18.02         4.27        15.98 
TCGA-12-0618 TCGA-12-0619 TCGA-12-0707 TCGA-12-0775 TCGA-12-0821 TCGA-12-1088 
       12.99        34.92        28.41         7.63        10.62       127.59 
TCGA-12-1096 TCGA-12-1097 TCGA-12-1099 TCGA-12-1598 TCGA-12-1600 TCGA-12-1602 
        9.11        14.53         4.14        15.65        14.73         6.77 
TCGA-12-3646 TCGA-12-3648 TCGA-12-3651 TCGA-14-0736 TCGA-14-0783 TCGA-14-0817 
       44.02        26.93        12.69        15.12         6.21         5.39 
TCGA-14-0867 TCGA-14-1459 TCGA-14-1794 TCGA-15-1447 TCGA-15-1449 TCGA-16-0846 
        2.04        12.43         0.99        53.19        13.28         3.91 
TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 TCGA-16-1045 TCGA-16-1063 TCGA-19-1385 
       17.59        26.07        16.37        29.03        13.97        10.75 
TCGA-19-1387 TCGA-19-1388 TCGA-19-1390 TCGA-19-1392 TCGA-19-2629 TCGA-19-4065 
        5.95        12.95        25.38         3.65        24.23         7.04 
TCGA-19-5955 TCGA-19-5956 TCGA-19-5960 TCGA-26-1438 TCGA-26-1439 TCGA-26-6174 
        1.78        22.49        14.96        10.03        13.87         2.33 
TCGA-27-1830 TCGA-27-1834 TCGA-27-2519 TCGA-27-2524 TCGA-27-2526 TCGA-28-1746 
        5.06        40.54        10.39         7.59         2.86         0.20 
TCGA-28-1750 TCGA-28-1756 TCGA-28-2513 TCGA-28-2514 TCGA-28-5215 TCGA-28-5219 
        8.35         2.83         7.30         5.26        11.01        22.68 
TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 TCGA-32-2616 TCGA-32-2634 TCGA-32-4210 
       15.39        21.07         0.49         7.36        22.78         3.72 
TCGA-32-4211 TCGA-32-4719 TCGA-41-2571 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 
       12.59        10.85         0.85         8.94         9.53         0.99 
TCGA-41-3915 TCGA-41-5651 TCGA-4W-AA9S TCGA-76-4925 TCGA-76-4929 TCGA-76-4935 
       11.84        15.12         4.14         4.80         3.65        10.78 
TCGA-76-6191 TCGA-76-6193 TCGA-76-6285 TCGA-76-6286 TCGA-DB-5274 TCGA-DB-5277 
       16.70         2.70         8.35        20.98        75.25        50.86 
TCGA-DB-5279 TCGA-DB-A4XA TCGA-DB-A4XH TCGA-DH-5140 TCGA-DH-5142 TCGA-DH-A669 
       44.52        18.84        31.63        19.96        30.31        30.21 
TCGA-DH-A7UT TCGA-DU-6393 TCGA-DU-6400 TCGA-DU-7007 TCGA-DU-7010 TCGA-DU-7299 
       13.38        52.11         1.22        62.96        14.99        44.02 
TCGA-DU-8158 TCGA-DU-A6S3 TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7TC TCGA-E1-5311 
        5.10         2.70        21.30        17.98        23.51       134.27 
TCGA-E1-A7YV TCGA-FG-6688 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-A4MW TCGA-HT-7468 
       32.45        18.77        15.35        17.88        18.38         6.67 
TCGA-HT-7480 TCGA-HT-7606 TCGA-HT-7609 TCGA-HT-7616 TCGA-HT-8011 TCGA-HT-8012 
       75.19        17.29        45.99         0.23        16.24         9.40 
TCGA-HT-8104 TCGA-HT-8563 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61B TCGA-HT-A74H 
       12.23        28.27        16.83        21.40        17.52         2.43 
TCGA-HT-A74K TCGA-HW-7489 TCGA-P5-A5EZ TCGA-QH-A65S TCGA-QH-A6X8 TCGA-RY-A83X 
       15.35         8.32         2.30         2.53        16.73        30.87 
TCGA-S9-A6TS TCGA-S9-A6U2 TCGA-S9-A6WD TCGA-S9-A6WI TCGA-S9-A7QZ TCGA-TM-A7C5 
       62.17        23.64        69.50        84.99        13.02        49.32 
TCGA-VV-A86M TCGA-W9-A837 TCGA-WY-A85C TCGA-WY-A85E 
       16.01        51.06        46.88        20.81 

$`DEL PEAK 37(15Q14) WILD-TYPE`
TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 TCGA-02-0014 TCGA-02-0015 
       18.35        23.18        10.59        35.41        82.59        20.61 
TCGA-02-0021 TCGA-02-0023 TCGA-02-0025 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 
       77.65        20.12        42.74        12.16        90.58         2.83 
TCGA-02-0037 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0051 TCGA-02-0052 
        3.62        10.52        18.31         6.87        15.09        12.59 
TCGA-02-0055 TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 
        2.50        19.86         8.35         9.57         6.02        19.73 
TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 TCGA-02-0075 TCGA-02-0080 
       26.43        28.70        25.05         5.49        20.84        89.72 
TCGA-02-0083 TCGA-02-0085 TCGA-02-0086 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 
       22.72        51.32         8.81        16.96         3.48        27.02 
TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 TCGA-02-0114 TCGA-02-0116 TCGA-02-0260 
       65.00        11.67        17.65        99.98        48.95        16.93 
TCGA-02-0266 TCGA-02-0271 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 
       17.72        14.47        13.87        14.20        15.95        12.23 
TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 
       10.62         7.33        15.91        25.71         4.37        25.12 
TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 
       10.59        12.39        14.50        10.55        47.11        11.34 
TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 TCGA-02-2485 TCGA-02-2486 
        9.27        16.21         3.35        16.80        15.45        20.32 
TCGA-06-0122 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0130 TCGA-06-0132 
        6.15        47.61         6.94         3.98        12.95        25.35 
TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0142 
       14.30        26.70        24.23        11.90         0.20         2.20 
TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 
       11.74         2.33        20.09        17.79        10.09         8.61 
TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 
       19.46        46.59        12.33        13.94        10.45         3.19 
TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 
       10.82         9.44        11.80         3.42        56.91        10.65 
TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0175 TCGA-06-0176 
       19.66         3.29        13.12         4.47         4.04        91.00 
TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 
       88.14        20.25         3.65        69.90        73.84        27.22 
TCGA-06-0189 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0206 TCGA-06-0208 
       15.42         4.67         7.40         5.56         7.66         8.42 
TCGA-06-0210 TCGA-06-0211 TCGA-06-0214 TCGA-06-0219 TCGA-06-0221 TCGA-06-0240 
        7.40        11.84        15.02         0.72        19.82        20.42 
TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0409 TCGA-06-0412 TCGA-06-0413 
       48.69        10.82         9.01        72.36         9.57         3.16 
TCGA-06-0414 TCGA-06-0644 TCGA-06-0650 TCGA-06-0743 TCGA-06-0744 TCGA-06-0747 
       35.11        12.62        23.57        26.40        46.88         2.70 
TCGA-06-0749 TCGA-06-0750 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 
        2.70         0.92        46.19         5.65         7.17        40.41 
TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1087 
       16.57        20.78        26.76        23.93         6.84         4.04 
TCGA-06-1800 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-1806 TCGA-06-2557 
       26.79        15.32        13.61        33.90        15.32         1.08 
TCGA-06-2559 TCGA-06-2561 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 
        4.93        17.65        30.64         5.95        16.64         5.98 
TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 
        4.37         0.43        31.50        11.74         3.55         8.35 
TCGA-06-5412 TCGA-06-5414 TCGA-06-5415 TCGA-06-5418 TCGA-06-5858 TCGA-06-5859 
        4.54         8.98         8.55         2.73         6.15         4.57 
TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6695 
        5.23         7.79         5.39         1.48       120.56         8.32 
TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-06-A5U0 
       12.85         4.77         1.55         4.77         4.96         4.70 
TCGA-06-A6S1 TCGA-08-0244 TCGA-08-0245 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 
        2.56        22.68        37.84         1.74         8.42        25.71 
TCGA-08-0350 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0356 TCGA-08-0357 
       29.23         1.28         8.42        17.95        31.10        37.58 
TCGA-08-0358 TCGA-08-0375 TCGA-08-0380 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 
       22.29        12.23        14.93        15.35        13.97         0.72 
TCGA-08-0509 TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 
       12.56        42.15        11.08        19.59        58.68        19.33 
TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 
       10.75         4.80         7.27        18.41         7.56        15.35 
TCGA-12-0616 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 
       14.73        10.45         7.59        94.78         0.10        38.17 
TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0769 
       25.97        26.66        12.13         3.65        20.38        15.06 
TCGA-12-0772 TCGA-12-0773 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 
       53.85        43.23         9.73        14.93        14.86        91.76 
TCGA-12-0819 TCGA-12-0820 TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 
       24.79        18.48        23.51        27.78        38.76         8.94 
TCGA-12-0829 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 
       20.58         5.82         7.59        33.21        21.73        15.98 
TCGA-12-1094 TCGA-12-1095 TCGA-12-1098 TCGA-12-1599 TCGA-12-3644 TCGA-12-3649 
       12.23        15.85         3.98        25.68        59.77        15.22 
TCGA-12-3650 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 
       10.95        34.92        14.53        14.93         3.22         2.04 
TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 
       11.97         0.95        23.05         2.24        11.24        13.78 
TCGA-14-0812 TCGA-14-0813 TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 TCGA-14-0871 
        3.25         1.35         2.89        16.50        26.33        28.93 
TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 
       15.95        19.30         0.79         1.38         1.12         3.75 
TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 
       32.05        58.78        23.11         7.10         1.15        30.18 
TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1795 TCGA-14-1821 TCGA-14-1823 
        0.92        40.96         6.67         1.97        17.79        17.85 
TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-3477 
        7.63         5.88         7.17        17.49         7.96         3.78 
TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 TCGA-16-0861 TCGA-16-1047 
        3.42        13.78        50.53        19.10         4.31         4.57 
TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1460 TCGA-19-0955 
       10.29        14.01         9.14        21.24         6.41        11.77 
TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1386 
       21.90         8.61         0.66        14.27         3.39         9.07 
TCGA-19-1389 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 
        4.64         7.17        12.66         3.25         0.13         9.67 
TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2631 
        4.87         1.08         7.53         0.16         4.08         7.00 
TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 
        6.64        17.19         8.02        18.90         4.73        12.10 
TCGA-19-5958 TCGA-19-5959 TCGA-19-A60I TCGA-19-A6J4 TCGA-19-A6J5 TCGA-26-1440 
       14.07        16.80        17.79         3.98        28.54         9.73 
TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 
       31.33         7.13         9.37         9.40        14.86         5.49 
TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-A7UX TCGA-27-1831 
        8.88        18.97         1.58         7.92        19.33        16.60 
TCGA-27-1832 TCGA-27-1833 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 
        9.86        24.23        21.30        30.05        14.04        11.51 
TCGA-27-2518 TCGA-27-2521 TCGA-27-2523 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 
       24.76        10.39        16.08        14.40        15.78         2.53 
TCGA-28-1749 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1757 
        9.21         7.63         8.48         1.22         1.55         0.13 
TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 
        0.66         6.74         4.77        14.93        11.28        17.88 
TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5216 TCGA-28-5218 
       14.53        11.77        31.27        23.44        13.64         5.16 
TCGA-28-5220 TCGA-28-6450 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 
       12.76         5.42         0.10        15.85        19.50         1.18 
TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 
        4.67        12.69        14.86        16.93        12.23        20.78 
TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 TCGA-32-2638 TCGA-32-4208 TCGA-32-4213 
       15.02        15.95         8.84        25.18        21.14        19.86 
TCGA-32-5222 TCGA-41-2572 TCGA-41-3393 TCGA-41-4097 TCGA-41-6646 TCGA-4W-AA9T 
       19.23        13.35         4.44         0.20        12.46        14.76 
TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 
        3.45        20.91         4.34        14.33         8.22         7.50 
TCGA-76-4926 TCGA-76-4928 TCGA-76-4931 TCGA-76-4934 TCGA-76-6192 TCGA-76-6280 
        4.54         3.09         9.17         2.53         3.29        11.38 
TCGA-76-6282 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 
       17.06         4.83         5.03         0.23         9.27         7.73 
TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 TCGA-OX-A56R TCGA-RR-A6KA 
        7.79         1.61        17.72        26.30         5.92         6.28 
TCGA-RR-A6KC TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 
       20.55         4.70         7.69        43.89        18.15        10.62 
TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 
       64.64        40.18         0.10        21.01         9.96         6.38 
TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 
       17.69        23.84        17.95        12.43         8.48         7.56 
TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5275 
        8.02         7.40         6.61       122.73        81.96        47.93 
TCGA-DB-5276 TCGA-DB-5278 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XB 
       72.92        50.17        36.56        78.28        46.42        30.21 
TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A64L 
       46.72        39.78        37.45        33.57        72.95        24.20 
TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U 
       25.48        30.12         5.98        31.40        27.45        27.81 
TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M 
       29.23        14.40        18.51        12.10        11.24        17.88 
TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5141 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A66B 
       30.74        16.18        31.82        14.40         8.02        42.05 
TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UU 
       27.81        17.19        17.19        54.25        13.12         3.45 
TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 
       18.61        18.02        14.56        17.46         6.74        13.38 
TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 
        8.45         6.81       182.33        18.94        17.49        15.16 
TCGA-DU-6392 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 
      211.17        22.42        49.02        75.16        46.06        65.75 
TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 
       87.45         7.04        11.64       133.74        19.89        16.83 
TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7008 
       94.52       114.08         7.96         7.73        11.47       156.23 
TCGA-DU-7009 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7014 TCGA-DU-7015 
      138.28       105.21         6.54         8.84       117.40        90.77 
TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 
       30.67        26.30        10.36         7.96        94.32        18.94 
TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 
       62.01        25.91        60.30        23.31        41.98         2.76 
TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 
       23.74        14.60        20.68        21.40        19.13        16.96 
TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT 
       15.48        14.17        14.24        12.59        15.12         4.96 
TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S6 TCGA-DU-A6S7 
        3.65         5.65        12.20         8.65        77.98         7.23 
TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A7T8 TCGA-DU-A7TA 
        5.98        11.41        26.76         7.13       124.50        77.88 
TCGA-DU-A7TB TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 
       42.31         7.50        44.42         0.56        50.14        67.46 
TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 
       41.13        79.99        57.93        78.21        95.57       130.78 
TCGA-E1-A7YO TCGA-E1-A7YW TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 
       75.02        36.82        32.35        14.33         0.23         0.20 
TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6689 TCGA-FG-6690 
       47.77        25.48        34.36        36.82        14.93        24.99 
TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 
       23.97        18.44        22.55        20.61        20.09        12.95 
TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 
       13.68        14.24        16.01        20.09        14.96        22.52 
TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J 
       32.61        38.27        10.72        18.71        23.70        14.76 
TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y 
       17.82        16.41        15.02        16.44        22.26        28.54 
TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q 
       10.78        36.66        48.69        20.45        13.58         5.72 
TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 
       27.52         0.10        11.54        40.11         0.13         0.03 
TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 
       16.54         3.75        17.42         6.54        24.26         6.38 
TCGA-HT-7479 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 
       40.34        95.93       106.95       172.77         4.01         5.03 
TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7607 TCGA-HT-7608 
       29.85        23.18       122.47         4.57         3.16        22.06 
TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 
       56.09        57.60        14.27         0.16        16.24         0.76 
TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 
       44.68         6.05        42.74         0.10        31.69        14.96 
TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 
        0.10         0.10         2.96        17.52         6.90        14.53 
TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 
       39.48        19.23        39.09         0.23        50.63         0.49 
TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 
       23.61        37.15         0.33         0.13         3.68         5.33 
TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8013 
       35.47         3.72        11.28        31.43         1.64        63.55 
TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 
        0.10        37.87        33.01         6.25         0.10         0.46 
TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 
        2.50         5.56        13.78         0.23        29.59        34.19 
TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 
       15.72         0.23        26.04         0.13        20.22         0.07 
TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 
       27.35         0.10         5.33         2.70        16.93         1.81 
TCGA-HT-A617 TCGA-HT-A61C TCGA-HT-A74J TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 
       16.14        17.65        10.52        11.05         0.10        29.92 
TCGA-HW-7487 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7493 TCGA-HW-7495 TCGA-HW-8319 
       19.89        19.23        40.18        35.90         4.31        21.70 
TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL 
       21.60        19.59        17.82        20.35        12.76        20.81 
TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV 
       20.71        19.00        42.77        14.40        14.40         0.23 
TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 
        6.71         1.64         2.37         4.11         5.88         7.63 
TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z 
        0.76         1.28         0.16        10.42        13.25        11.64 
TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-QH-A65R TCGA-QH-A65V TCGA-QH-A65X 
        0.20         9.01        13.61        15.16        12.62        15.85 
TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX 
       14.04        19.33        14.83        14.53        13.61        12.23 
TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X9 
        2.20         9.17        10.29        14.53        16.34         1.91 
TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML 
       16.50         5.03        11.08        12.99        88.83        94.03 
TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 
       32.65        59.38         5.46         9.90        28.08         2.07 
TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX 
       19.59        30.67        87.12        18.77        37.84        34.49 
TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U5 TCGA-S9-A6U6 
       31.33        28.70        22.95        17.62        32.61        16.08 
TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WE TCGA-S9-A6WG 
       98.24        95.93         5.85       106.39        72.59        80.12 
TCGA-S9-A6WH TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP 
       32.45        31.10        19.86        15.91        18.61        15.16 
TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ 
       14.07        36.13         7.92        22.32        23.51         7.13 
TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX 
       20.02         8.19         2.04        17.03        15.06        13.12 
TCGA-S9-A7QY TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 
       28.37       169.84        10.39        99.06        30.05        98.63 
TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7CA 
       31.59        18.71        11.97        49.45        48.33        34.78 
TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H 
       48.39        24.92        16.18        59.05        40.64        30.44 
TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q 
       28.08        24.16        40.83        24.79        33.24        25.38 
TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RH TCGA-TQ-A7RW TCGA-VM-A8C8 
       18.61        14.93        23.80        15.98        26.99        43.04 
TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CH 
       30.08        13.51         0.10         7.89        35.93        23.47 
TCGA-VV-A829 TCGA-VW-A7QS TCGA-VW-A8FI TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 
       37.05        23.21         8.05        13.32        43.96        39.88 
TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85D 
       43.40        45.80        37.71 

  DEL PEAK 37(15Q14) MUTATED DEL PEAK 37(15Q14) WILD-TYPE 
                        0.20                         0.03 
  DEL PEAK 37(15Q14) MUTATED DEL PEAK 37(15Q14) WILD-TYPE 
                      134.27                       211.17 
  DEL PEAK 37(15Q14) MUTATED DEL PEAK 37(15Q14) WILD-TYPE 
                       12.97                        15.02 
[1] "0.2 - 134.3 (13.0)" "0.0 - 211.2 (15.0)"
[1] "hr=" "1.6"
D69V2, continuous
D69V3, binary
                              cls
clus                             0   1
  DEL PEAK 37(15Q14) MUTATED   149  55
  DEL PEAK 37(15Q14) WILD-TYPE 421 417
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 37(15Q14) MUTATED    149   55
  DEL PEAK 37(15Q14) WILD-TYPE  421  417
                        clus
vv                       DEL PEAK 37(15Q14) MUTATED
  BRAIN                                         149
  CENTRAL NERVOUS SYSTEM                         55
                        clus
vv                       DEL PEAK 37(15Q14) WILD-TYPE
  BRAIN                                           421
  CENTRAL NERVOUS SYSTEM                          417
[1] 2 2
[1] FALSE
D69V4, binary
                              cls
clus                             0   1
  DEL PEAK 37(15Q14) MUTATED    80 124
  DEL PEAK 37(15Q14) WILD-TYPE 350 488
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 37(15Q14) MUTATED     80  124
  DEL PEAK 37(15Q14) WILD-TYPE  350  488
        clus
vv       DEL PEAK 37(15Q14) MUTATED DEL PEAK 37(15Q14) WILD-TYPE
  FEMALE                         80                          350
  MALE                          124                          488
[1] 2 2
[1] FALSE
D69V5, continuous
                              vv
clus                           ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  DEL PEAK 37(15Q14) MUTATED            22                             7
  DEL PEAK 37(15Q14) WILD-TYPE         154                            20
                              vv
clus                           OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  DEL PEAK 37(15Q14) MUTATED                 12                21
  DEL PEAK 37(15Q14) WILD-TYPE              106               157
                              vv
clus                           TREATED PRIMARY GBM
  DEL PEAK 37(15Q14) MUTATED                     4
  DEL PEAK 37(15Q14) WILD-TYPE                  14
                              vv
clus                           UNTREATED PRIMARY (DE NOVO) GBM
  DEL PEAK 37(15Q14) MUTATED                               138
  DEL PEAK 37(15Q14) WILD-TYPE                             387
D69V6, multiclass
                                 clus
vv                                DEL PEAK 37(15Q14) MUTATED
  ASTROCYTOMA                                             22
  GLIOBLASTOMA MULTIFORME (GBM)                            7
  OLIGOASTROCYTOMA                                        12
  OLIGODENDROGLIOMA                                       21
  TREATED PRIMARY GBM                                      4
  UNTREATED PRIMARY (DE NOVO) GBM                        138
                                 clus
vv                                DEL PEAK 37(15Q14) WILD-TYPE
  ASTROCYTOMA                                              154
  GLIOBLASTOMA MULTIFORME (GBM)                             20
  OLIGOASTROCYTOMA                                         106
  OLIGODENDROGLIOMA                                        157
  TREATED PRIMARY GBM                                       14
  UNTREATED PRIMARY (DE NOVO) GBM                          387
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D69V7, binary
                              cls
clus                             0   1
  DEL PEAK 37(15Q14) MUTATED   106  98
  DEL PEAK 37(15Q14) WILD-TYPE 368 470
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 37(15Q14) MUTATED    106   98
  DEL PEAK 37(15Q14) WILD-TYPE  368  470
     clus
vv    DEL PEAK 37(15Q14) MUTATED DEL PEAK 37(15Q14) WILD-TYPE
  NO                         106                          368
  YES                         98                          470
[1] 2 2
[1] FALSE
                              vv
clus                           AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 37(15Q14) MUTATED                                  0     6
  DEL PEAK 37(15Q14) WILD-TYPE                                1    15
                              vv
clus                           BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 37(15Q14) MUTATED                          11   179
  DEL PEAK 37(15Q14) WILD-TYPE                        53   743
D69V8, multiclass
                                  clus
vv                                 DEL PEAK 37(15Q14) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                          0
  ASIAN                                                     6
  BLACK OR AFRICAN AMERICAN                                11
  WHITE                                                   179
                                  clus
vv                                 DEL PEAK 37(15Q14) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                            1
  ASIAN                                                      15
  BLACK OR AFRICAN AMERICAN                                  53
  WHITE                                                     743
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D69V9, binary
                              cls
clus                             0   1
  DEL PEAK 37(15Q14) MUTATED     6 179
  DEL PEAK 37(15Q14) WILD-TYPE  24 712
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 37(15Q14) MUTATED      6  179
  DEL PEAK 37(15Q14) WILD-TYPE   24  712
                        clus
vv                       DEL PEAK 37(15Q14) MUTATED
  HISPANIC OR LATINO                              6
  NOT HISPANIC OR LATINO                        179
                        clus
vv                       DEL PEAK 37(15Q14) WILD-TYPE
  HISPANIC OR LATINO                               24
  NOT HISPANIC OR LATINO                          712
[1] 2 2
[1] FALSE

Clustering(70) Variable = DEL PEAK 38(16P12.2) MUTATION ANALYSIS
D70V1, survival
                                sevent
clus2                              0   1
  DEL PEAK 38(16P12.2) MUTATED    22  89
  DEL PEAK 38(16P12.2) WILD-TYPE 458 470
  DEL PEAK 38(16P12.2) MUTATED DEL PEAK 38(16P12.2) WILD-TYPE 
                           111                            928 
  DEL PEAK 38(16P12.2) MUTATED DEL PEAK 38(16P12.2) WILD-TYPE 
                            89                            470 
$`DEL PEAK 38(16P12.2) MUTATED`
TCGA-02-0025 TCGA-02-0052 TCGA-02-0055 TCGA-02-0074 TCGA-02-0116 TCGA-02-0258 
       42.74        12.59         2.50        10.19        48.95        16.54 
TCGA-02-0266 TCGA-02-0281 TCGA-02-0337 TCGA-02-0456 TCGA-02-2486 TCGA-06-0132 
       17.72         3.98        25.12         3.35        20.32        25.35 
TCGA-06-0164 TCGA-06-0168 TCGA-06-0171 TCGA-06-0177 TCGA-06-0214 TCGA-06-0216 
       56.91        19.66        13.12         4.18        15.02        24.16 
TCGA-06-0221 TCGA-06-0394 TCGA-06-0410 TCGA-06-0414 TCGA-06-0645 TCGA-06-0649 
       19.82        10.82         4.70        35.11         5.75         2.10 
TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0879 TCGA-06-0882 TCGA-06-1087 
       14.20        26.40        46.88        40.41        20.78         4.04 
TCGA-06-2557 TCGA-06-2569 TCGA-06-5418 TCGA-06-6389 TCGA-06-6698 TCGA-06-6700 
        1.08         0.43         2.73         7.79         4.77         4.77 
TCGA-06-A5U1 TCGA-06-A6S0 TCGA-06-A6S1 TCGA-08-0347 TCGA-08-0353 TCGA-08-0386 
        1.87         3.12         2.56        25.71         8.42        18.02 
TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 TCGA-08-0514 TCGA-08-0525 TCGA-12-0619 
        0.72        12.56         4.27        11.08        15.98        34.92 
TCGA-12-0620 TCGA-12-0776 TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 TCGA-12-1099 
       10.45         9.73        23.51        27.78        38.76         4.14 
TCGA-12-1600 TCGA-12-3649 TCGA-12-3651 TCGA-12-3653 TCGA-12-5301 TCGA-14-0736 
       14.73        15.22        12.69        14.53         2.04        15.12 
TCGA-14-0812 TCGA-14-0813 TCGA-14-0871 TCGA-14-1823 TCGA-16-0861 TCGA-19-1389 
        3.25         1.35        28.93        17.85         4.31         4.64 
TCGA-19-1392 TCGA-19-1786 TCGA-19-2620 TCGA-19-5953 TCGA-19-5955 TCGA-19-5956 
        3.65         7.17         4.87         4.73         1.78        22.49 
TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-2521 TCGA-27-2524 TCGA-28-1750 
       40.54        21.30        30.05        10.39         7.59         8.35 
TCGA-28-1753 TCGA-28-5204 TCGA-28-5216 TCGA-32-1978 TCGA-32-1980 TCGA-32-2494 
        1.22        14.93        13.64        15.85         1.18        20.78 
TCGA-32-4210 TCGA-41-3392 TCGA-41-3915 TCGA-74-6575 TCGA-76-4925 TCGA-76-4928 
        3.72         0.99        11.84        20.91         4.80         3.09 
TCGA-76-6191 TCGA-76-6282 TCGA-CS-5397 TCGA-CS-6665 TCGA-DB-5277 TCGA-DB-5281 
       16.70        17.06         6.38        12.43        50.86        78.28 
TCGA-DH-A669 TCGA-DU-5847 TCGA-DU-7006 TCGA-DU-7018 TCGA-DU-8165 TCGA-E1-5304 
       30.21        18.02        11.47        30.67        19.13        41.13 
TCGA-E1-5307 TCGA-FG-A4MW TCGA-HT-7477 TCGA-HT-7689 TCGA-HT-8564 TCGA-S9-A6U0 
       57.93        18.38        24.26        14.96        15.72        22.95 
TCGA-S9-A7IX TCGA-S9-A89V TCGA-TM-A84I 
       22.32        18.71        28.08 

$`DEL PEAK 38(16P12.2) WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
       11.77         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 
       20.71        82.59        20.61        87.06        77.65        20.12 
TCGA-02-0024 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 
       53.10        24.59        12.16        90.58         2.83        14.14 
TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 
        3.62        10.72        10.52        18.31         6.87        14.73 
TCGA-02-0048 TCGA-02-0051 TCGA-02-0054 TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 
        3.22        15.09         6.54        19.86         8.35         9.57 
TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 
        6.02        19.73        26.43        28.70        25.05         5.49 
TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 
       20.84        27.25        89.72        22.72        12.62        51.32 
TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 
        8.81        57.76        16.96         3.48        27.02        65.00 
TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 
       11.67        17.65        23.18        92.65        99.98        15.65 
TCGA-02-0260 TCGA-02-0269 TCGA-02-0271 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 
       16.93        10.75        14.47        13.87        14.20        15.95 
TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 
       12.23         9.90         7.73        10.62         7.33        15.91 
TCGA-02-0332 TCGA-02-0333 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 
       25.71         4.37        10.59        12.39        14.50        10.55 
TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-2466 TCGA-02-2470 
       47.11        11.34         9.27        16.21        16.80        12.92 
TCGA-02-2483 TCGA-02-2485 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 
       15.32        15.45         2.70         6.15        20.38        47.61 
TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0133 
        6.94         3.98        22.72        33.67        12.95        14.30 
TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 
       26.70        24.23        11.90         0.20        10.29         2.20 
TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 
       11.74         2.33        20.09        17.79        10.09         8.61 
TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 
       19.46        46.59        12.33        13.94        10.45         3.19 
TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 TCGA-06-0165 TCGA-06-0166 
       10.82         9.44        11.80         3.42        10.65         5.85 
TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0178 
        3.29         4.47         3.22         4.04        91.00        88.14 
TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 
       20.25         3.65        69.90        73.84        27.22        44.58 
TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 
       15.42        10.42        38.96         4.67         7.40         5.56 
TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 
        0.39         7.66         8.42         7.63         7.40        11.84 
TCGA-06-0213 TCGA-06-0219 TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 
        0.53         0.72        13.64        13.32        20.42        48.69 
TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0412 TCGA-06-0413 TCGA-06-0644 
        9.01         0.26        72.36         9.57         3.16        12.62 
TCGA-06-0646 TCGA-06-0648 TCGA-06-0650 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 
        5.75         9.80        23.57         7.86         2.70         2.70 
TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0881 
        0.92        43.46        46.19         5.65         7.17        16.57 
TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 
       26.76        23.93         6.84        26.79        11.84        15.32 
TCGA-06-1804 TCGA-06-1805 TCGA-06-1806 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.61        33.90        15.32        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 
       12.56        30.64         5.95        16.64         5.98         4.37 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       31.50        11.74         3.55         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 
        8.98         8.55         6.71         3.75         6.15         4.57 
TCGA-06-6388 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 
        5.23         5.39         1.48       120.56         7.36         8.32 
TCGA-06-6697 TCGA-06-6699 TCGA-06-6701 TCGA-06-A5U0 TCGA-06-A7TK TCGA-06-A7TL 
       12.85         1.55         4.96         4.70         5.39         5.42 
TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 
       22.68        37.84         4.18       115.86         1.74         8.42 
TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0354 
       12.16         9.80        29.23        65.33         1.28        17.95 
TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 
       24.56        31.10        37.58        22.29         3.39        12.23 
TCGA-08-0380 TCGA-08-0389 TCGA-08-0390 TCGA-08-0512 TCGA-08-0516 TCGA-08-0517 
       14.93        15.35        13.97        42.15        19.59        58.68 
TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0529 TCGA-08-0531 
       19.33        10.75         4.80         7.27        18.41         7.56 
TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 
       15.35        14.73        12.99         7.59        94.78         0.10 
TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 
       38.17        25.97        26.66        12.13         3.65        20.38 
TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0778 
       28.41        15.06        53.85        43.23         7.63        14.93 
TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0828 
       14.86        91.76        24.79        18.48        10.62         8.94 
TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 
       20.58       127.59         5.82         7.59        33.21        21.73 
TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 
       15.98        12.23        15.85         9.11        14.53         3.98 
TCGA-12-1598 TCGA-12-1599 TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 
       15.65        25.68         6.77        59.77        44.02        26.93 
TCGA-12-3650 TCGA-12-3652 TCGA-12-5295 TCGA-12-5299 TCGA-14-0740 TCGA-14-0781 
       10.95        34.92        14.93         3.22        11.97         0.95 
TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0817 
        6.21        23.05         2.24        11.24        13.78         5.39 
TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 TCGA-14-0867 TCGA-14-1034 TCGA-14-1037 
        2.89        16.50        26.33         2.04        15.95        19.30 
TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 
        0.79         1.38         1.12         3.75        32.05        58.78 
TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 
       23.11         7.10         1.15        30.18         0.92        40.96 
TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 TCGA-14-1825 
        6.67        12.43         0.99         1.97        17.79         7.63 
TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-3477 TCGA-14-4157 
        5.88         7.17        17.49         7.96         3.78         3.42 
TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 TCGA-15-1447 TCGA-15-1449 TCGA-16-0846 
       13.78        50.53        19.10        53.19        13.28         3.91 
TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 
       17.59        26.07        16.37        29.03         4.57        10.29 
TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 
       14.01         9.14        21.24        13.97         6.41        11.77 
TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 
       21.90         8.61         0.66        14.27         3.39        10.75 
TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 TCGA-19-1390 TCGA-19-1787 TCGA-19-1789 
        9.07         5.95        12.95        25.38        12.66         3.25 
TCGA-19-1791 TCGA-19-2619 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 
        0.13         9.67         1.08         7.53         0.16         4.08 
TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 
       24.23         7.00         7.04         6.64        17.19         8.02 
TCGA-19-5952 TCGA-19-5954 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-19-A60I 
       18.90        12.10        14.07        16.80        14.96        17.79 
TCGA-19-A6J4 TCGA-19-A6J5 TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 TCGA-26-1442 
        3.98        28.54        10.03        13.87         9.73        31.33 
TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 
        7.13         9.37         9.40        14.86         5.49         8.88 
TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-26-A7UX TCGA-27-1830 
       18.97         1.58         7.92         2.33        19.33         5.06 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 
       16.60         9.86        24.23        14.04        11.51        24.76 
TCGA-27-2519 TCGA-27-2523 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 
       10.39        16.08         2.86        14.40        15.78         0.20 
TCGA-28-1747 TCGA-28-1749 TCGA-28-1751 TCGA-28-1752 TCGA-28-1755 TCGA-28-1756 
        2.53         9.21         7.63         8.48         1.55         2.83 
TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 
        0.13         0.66         6.74         4.77         7.30         5.26 
TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 
       11.28        17.88        14.53        11.77        31.27        23.44 
TCGA-28-5215 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 
       11.01         5.16        22.68        12.76         5.42        15.39 
TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 TCGA-32-1979 TCGA-32-1982 TCGA-32-1986 
       21.07         0.49         0.10        19.50         4.67        12.69 
TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2495 TCGA-32-2615 TCGA-32-2616 
       14.86        16.93        12.23        15.02        15.95         7.36 
TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4211 TCGA-32-4213 
        8.84        22.78        25.18        21.14        12.59        19.86 
TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 
       10.85        19.23         0.85        13.35         8.94         9.53 
TCGA-41-3393 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-4W-AA9S TCGA-4W-AA9T 
        4.44         0.20        15.12        12.46         4.14        14.76 
TCGA-74-6573 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4926 
        3.45         4.34        14.33         8.22         7.50         4.54 
TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 TCGA-76-6192 TCGA-76-6193 
        3.65         9.17         2.53        10.78         3.29         2.70 
TCGA-76-6280 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 
       11.38         8.35        20.98         4.83         5.03         0.23 
TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        9.27         7.73         7.79         1.61        17.72        26.30 
TCGA-OX-A56R TCGA-RR-A6KA TCGA-RR-A6KC TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 
        5.92         6.28        20.55         4.70         7.69        43.89 
TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 
       18.15        10.62        64.64        40.18         0.10        21.01 
TCGA-CS-5396 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6666 TCGA-CS-6667 
        9.96        17.69        23.84        17.95         8.48         7.56 
TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 
        8.02         7.40         6.61       122.73        81.96        75.25 
TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-A4X9 
       47.93        72.92        50.17        44.52        36.56        46.42 
TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF 
       18.84        30.21        46.72        39.78        37.45        33.57 
TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q 
       72.95        31.63        24.20        25.48        30.12         5.98 
TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X 
       31.40        27.45        27.81        29.23        14.40        18.51 
TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 
       12.10        11.24        17.88        30.74        16.18        19.96 
TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A66B TCGA-DH-A66D 
       31.82        30.31        14.40         8.02        42.05        27.81 
TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU 
       17.19        17.19        54.25        13.12        13.38         3.45 
TCGA-DH-A7UV TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 
       18.61        14.56        17.46         6.74        13.38         8.45 
TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 
        6.81       182.33        18.94        17.49        15.16       211.17 
TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 
       52.11        22.42        49.02        75.16        46.06        65.75 
TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 
        1.22        87.45         7.04        11.64       133.74        19.89 
TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7007 
       16.83        94.52       114.08         7.96         7.73        62.96 
TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 
      156.23       138.28        14.99       105.21         6.54         8.84 
TCGA-DU-7014 TCGA-DU-7015 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 
      117.40        90.77        26.30        10.36         7.96        94.32 
TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 
       18.94        44.02        62.01        25.91        60.30        23.31 
TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 
       41.98         2.76         5.10        23.74        14.60        20.68 
TCGA-DU-8164 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR 
       21.40        16.96        15.48        14.17        14.24        12.59 
TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 
       15.12         4.96         3.65         5.65        12.20         8.65 
TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L 
        2.70        77.98         7.23         5.98        11.41        26.76 
TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB 
        7.13        21.30        17.98       124.50        77.88        42.31 
TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 
       23.51         7.50        44.42         0.56        50.14        67.46 
TCGA-E1-5305 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YO 
       79.99       134.27        78.21        95.57       130.78        75.02 
TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 
       32.45        36.82        32.35        14.33         0.23         0.20 
TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 
       47.77        25.48        34.36        36.82        18.77        14.93 
TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7638 
       24.99        23.97        18.44        15.35        17.88        22.55 
TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 
       20.61        20.09        12.95        13.68        14.24        16.01 
TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU 
       20.09        14.96        22.52        32.61        38.27        10.72 
TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ 
       18.71        23.70        14.76        17.82        16.41        15.02 
TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 
       16.44        22.26        28.54        10.78        36.66        48.69 
TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 
       20.45        13.58         5.72        27.52         0.10         6.67 
TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 
       11.54        40.11         0.13         0.03        16.54         3.75 
TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 
       17.42         6.54         6.38        40.34        75.19        95.93 
TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 
      106.95       172.77         4.01         5.03        29.85        23.18 
TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 
      122.47         4.57        17.29         3.16        22.06        45.99 
TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 
       56.09        57.60         0.23        14.27         0.16        16.24 
TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 
        0.76        44.68         6.05        42.74         0.10        31.69 
TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 
        0.10         0.10         2.96        17.52         6.90        14.53 
TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 
       39.48        19.23        39.09         0.23        50.63         0.49 
TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 
       23.61        37.15         0.33         0.13         3.68         5.33 
TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 
       35.47         3.72        11.28        31.43         1.64        16.24 
TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 
        9.40        63.55         0.10        37.87        33.01        12.23 
TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 
        6.25         0.10         0.46         2.50         5.56        13.78 
TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8563 TCGA-HT-A4DS TCGA-HT-A4DV 
        0.23        29.59        34.19        28.27         0.23        26.04 
TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC 
        0.13        20.22         0.07        27.35         0.10         5.33 
TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 
        2.70        16.93         1.81        16.14        16.83        21.40 
TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L 
       17.52        17.65         2.43        10.52        15.35        11.05 
TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 
        0.10        29.92        19.89         8.32        19.23        40.18 
TCGA-HW-7493 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 
       35.90         4.31        21.70        21.60        19.59        17.82 
TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 
       20.35        12.76        20.81        20.71        19.00        42.77 
TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY 
       14.40        14.40         0.23         6.71         1.64         2.37 
TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 
        2.30         4.11         5.88         7.63         0.76         1.28 
TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 
        0.16        10.42        13.25        11.64         0.20         9.01 
TCGA-P5-A733 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z 
       13.61        15.16         2.53        12.62        15.85        14.04 
TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY 
       19.33        14.83        14.53        13.61        12.23         2.20 
TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 
        9.17        10.29        14.53        16.34        16.73         1.91 
TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML 
       16.50         5.03        11.08        12.99        88.83        94.03 
TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 
       32.65        59.38        30.87         5.46         9.90        28.08 
TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV 
        2.07        19.59        30.67        62.17        87.12        18.77 
TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U1 TCGA-S9-A6U2 
       37.84        34.49        31.33        28.70        17.62        23.64 
TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB 
       32.61        16.08        98.24        95.93         5.85       106.39 
TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL 
       69.50        72.59        80.12        32.45        84.99        31.10 
TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ 
       19.86        15.91        18.61        15.16        14.07        36.13 
TCGA-S9-A7IS TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 
        7.92        23.51         7.13        20.02         8.19         2.04 
TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 
       17.03        15.06        13.12        28.37        13.02       169.84 
TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89Z 
       10.39        99.06        30.05        98.63        31.59        11.97 
TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B 
       49.45        48.33        49.32        34.78        48.39        24.92 
TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84J TCGA-TM-A84L 
       16.18        59.05        40.64        30.44        24.16        40.83 
TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T 
       24.79        33.24        25.38        18.61        14.93        23.80 
TCGA-TQ-A7RH TCGA-TQ-A7RW TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB 
       15.98        26.99        43.04        30.08        13.51         0.10 
TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS 
        7.89        35.93        23.47        37.05        16.01        23.21 
TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A 
        8.05        51.06        13.32        43.96        39.88        43.40 
TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       45.80        46.88        37.71        20.81 

  DEL PEAK 38(16P12.2) MUTATED DEL PEAK 38(16P12.2) WILD-TYPE 
                          0.43                           0.03 
  DEL PEAK 38(16P12.2) MUTATED DEL PEAK 38(16P12.2) WILD-TYPE 
                         78.28                         211.17 
  DEL PEAK 38(16P12.2) MUTATED DEL PEAK 38(16P12.2) WILD-TYPE 
                        14.530                         14.845 
[1] "0.4 - 78.3 (14.5)"  "0.0 - 211.2 (14.8)"
[1] "hr=" "2"  
D70V2, continuous
D70V3, binary
                                cls
clus                               0   1
  DEL PEAK 38(16P12.2) MUTATED    92  19
  DEL PEAK 38(16P12.2) WILD-TYPE 478 453
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 38(16P12.2) MUTATED     92   19
  DEL PEAK 38(16P12.2) WILD-TYPE  478  453
                        clus
vv                       DEL PEAK 38(16P12.2) MUTATED
  BRAIN                                            92
  CENTRAL NERVOUS SYSTEM                           19
                        clus
vv                       DEL PEAK 38(16P12.2) WILD-TYPE
  BRAIN                                             478
  CENTRAL NERVOUS SYSTEM                            453
[1] 2 2
[1] FALSE
D70V4, binary
                                cls
clus                               0   1
  DEL PEAK 38(16P12.2) MUTATED    40  71
  DEL PEAK 38(16P12.2) WILD-TYPE 390 541
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 38(16P12.2) MUTATED     40   71
  DEL PEAK 38(16P12.2) WILD-TYPE  390  541
        clus
vv       DEL PEAK 38(16P12.2) MUTATED DEL PEAK 38(16P12.2) WILD-TYPE
  FEMALE                           40                            390
  MALE                             71                            541
[1] 2 2
[1] FALSE
D70V5, continuous
                                vv
clus                             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  DEL PEAK 38(16P12.2) MUTATED            13                             3
  DEL PEAK 38(16P12.2) WILD-TYPE         163                            24
                                vv
clus                             OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  DEL PEAK 38(16P12.2) MUTATED                  2                 4
  DEL PEAK 38(16P12.2) WILD-TYPE              116               174
                                vv
clus                             TREATED PRIMARY GBM
  DEL PEAK 38(16P12.2) MUTATED                     1
  DEL PEAK 38(16P12.2) WILD-TYPE                  17
                                vv
clus                             UNTREATED PRIMARY (DE NOVO) GBM
  DEL PEAK 38(16P12.2) MUTATED                                88
  DEL PEAK 38(16P12.2) WILD-TYPE                             437
D70V6, multiclass
                                 clus
vv                                DEL PEAK 38(16P12.2) MUTATED
  ASTROCYTOMA                                               13
  GLIOBLASTOMA MULTIFORME (GBM)                              3
  OLIGOASTROCYTOMA                                           2
  OLIGODENDROGLIOMA                                          4
  TREATED PRIMARY GBM                                        1
  UNTREATED PRIMARY (DE NOVO) GBM                           88
                                 clus
vv                                DEL PEAK 38(16P12.2) WILD-TYPE
  ASTROCYTOMA                                                163
  GLIOBLASTOMA MULTIFORME (GBM)                               24
  OLIGOASTROCYTOMA                                           116
  OLIGODENDROGLIOMA                                          174
  TREATED PRIMARY GBM                                         17
  UNTREATED PRIMARY (DE NOVO) GBM                            437
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D70V7, binary
                                cls
clus                               0   1
  DEL PEAK 38(16P12.2) MUTATED    66  45
  DEL PEAK 38(16P12.2) WILD-TYPE 408 523
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 38(16P12.2) MUTATED     66   45
  DEL PEAK 38(16P12.2) WILD-TYPE  408  523
     clus
vv    DEL PEAK 38(16P12.2) MUTATED DEL PEAK 38(16P12.2) WILD-TYPE
  NO                            66                            408
  YES                           45                            523
[1] 2 2
[1] FALSE
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 38(16P12.2) MUTATED                                  0     2
  DEL PEAK 38(16P12.2) WILD-TYPE                                1    19
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 38(16P12.2) MUTATED                           9    96
  DEL PEAK 38(16P12.2) WILD-TYPE                        55   826
D70V8, multiclass
                                  clus
vv                                 DEL PEAK 38(16P12.2) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            0
  ASIAN                                                       2
  BLACK OR AFRICAN AMERICAN                                   9
  WHITE                                                      96
                                  clus
vv                                 DEL PEAK 38(16P12.2) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              1
  ASIAN                                                        19
  BLACK OR AFRICAN AMERICAN                                    55
  WHITE                                                       826
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D70V9, binary
                                cls
clus                               0   1
  DEL PEAK 38(16P12.2) MUTATED     3  96
  DEL PEAK 38(16P12.2) WILD-TYPE  27 795
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 38(16P12.2) MUTATED      3   96
  DEL PEAK 38(16P12.2) WILD-TYPE   27  795
                        clus
vv                       DEL PEAK 38(16P12.2) MUTATED
  HISPANIC OR LATINO                                3
  NOT HISPANIC OR LATINO                           96
                        clus
vv                       DEL PEAK 38(16P12.2) WILD-TYPE
  HISPANIC OR LATINO                                 27
  NOT HISPANIC OR LATINO                            795
[1] 2 2
[1] FALSE

Clustering(71) Variable = DEL PEAK 39(16Q23.1) MUTATION ANALYSIS
D71V1, survival
                                sevent
clus2                              0   1
  DEL PEAK 39(16Q23.1) MUTATED    25  98
  DEL PEAK 39(16Q23.1) WILD-TYPE 455 461
  DEL PEAK 39(16Q23.1) MUTATED DEL PEAK 39(16Q23.1) WILD-TYPE 
                           123                            916 
  DEL PEAK 39(16Q23.1) MUTATED DEL PEAK 39(16Q23.1) WILD-TYPE 
                            98                            461 
$`DEL PEAK 39(16Q23.1) MUTATED`
TCGA-02-0009 TCGA-02-0026 TCGA-02-0038 TCGA-02-0039 TCGA-02-0052 TCGA-02-0055 
       10.59        24.59        10.72        10.52        12.59         2.50 
TCGA-02-0074 TCGA-02-0114 TCGA-02-0258 TCGA-02-0281 TCGA-02-0321 TCGA-02-0337 
       10.19        99.98        16.54         3.98         9.90        25.12 
TCGA-02-0456 TCGA-02-2470 TCGA-02-2486 TCGA-06-0132 TCGA-06-0164 TCGA-06-0168 
        3.35        12.92        20.32        25.35        56.91        19.66 
TCGA-06-0171 TCGA-06-0174 TCGA-06-0177 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 
       13.12         3.22         4.18        15.02        24.16         0.72 
TCGA-06-0221 TCGA-06-0414 TCGA-06-0645 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
       19.82        35.11         5.75        14.20        26.40        46.88 
TCGA-06-0749 TCGA-06-0879 TCGA-06-0882 TCGA-06-1087 TCGA-06-2557 TCGA-06-2566 
        2.70        40.41        20.78         4.04         1.08         5.98 
TCGA-06-2567 TCGA-06-2569 TCGA-06-5418 TCGA-06-5859 TCGA-06-6389 TCGA-06-6693 
        4.37         0.43         2.73         4.57         7.79       120.56 
TCGA-06-6698 TCGA-06-6700 TCGA-06-A6S0 TCGA-06-A6S1 TCGA-08-0353 TCGA-08-0392 
        4.77         4.77         3.12         2.56         8.42         0.72 
TCGA-08-0509 TCGA-08-0512 TCGA-08-0520 TCGA-08-0525 TCGA-12-0618 TCGA-12-0619 
       12.56        42.15        10.75        15.98        12.99        34.92 
TCGA-12-0654 TCGA-12-0692 TCGA-12-0826 TCGA-12-1088 TCGA-12-1091 TCGA-12-1099 
        7.59         3.65        27.78       127.59        33.21         4.14 
TCGA-12-1600 TCGA-12-3649 TCGA-12-3653 TCGA-12-5295 TCGA-12-5301 TCGA-14-0736 
       14.73        15.22        14.53        14.93         2.04        15.12 
TCGA-14-0787 TCGA-14-0812 TCGA-14-0813 TCGA-14-0862 TCGA-14-0871 TCGA-14-1453 
        2.24         3.25         1.35         2.89        28.93         1.15 
TCGA-14-1823 TCGA-14-2554 TCGA-16-1045 TCGA-19-1389 TCGA-19-1392 TCGA-19-5947 
       17.85        17.49        29.03         4.64         3.65         6.64 
TCGA-19-5953 TCGA-19-5955 TCGA-19-5956 TCGA-27-1832 TCGA-27-2521 TCGA-27-2524 
        4.73         1.78        22.49         9.86        10.39         7.59 
TCGA-28-1750 TCGA-28-1755 TCGA-28-5204 TCGA-28-5216 TCGA-32-1973 TCGA-32-1978 
        8.35         1.55        14.93        13.64        21.07        15.85 
TCGA-32-1980 TCGA-32-1987 TCGA-32-2494 TCGA-32-4210 TCGA-41-3915 TCGA-41-5651 
        1.18        14.86        20.78         3.72        11.84        15.12 
TCGA-74-6578 TCGA-76-4928 TCGA-OX-A56R TCGA-DB-5277 TCGA-DB-5281 TCGA-DB-A75O 
       14.33         3.09         5.92        50.86        78.28        30.74 
TCGA-DH-A669 TCGA-DU-5847 TCGA-DU-5855 TCGA-DU-7012 TCGA-DU-7014 TCGA-DU-7018 
       30.21        18.02         6.81         6.54       117.40        30.67 
TCGA-DU-8165 TCGA-DU-8167 TCGA-E1-5307 TCGA-FG-A4MW TCGA-HT-7469 TCGA-HT-8011 
       19.13        15.48        57.93        18.38        11.54        16.24 
TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A5RB TCGA-P5-A5F4 TCGA-S9-A6U9 TCGA-S9-A6WH 
       15.72         0.23         0.10         0.76        95.93        32.45 
TCGA-S9-A7IX TCGA-S9-A89V TCGA-S9-A89Z 
       22.32        18.71        11.97 

$`DEL PEAK 39(16Q23.1) WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0010 TCGA-02-0011 
       11.77         4.73        18.35        23.18        35.41        20.71 
TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 
       82.59        20.61        87.06        77.65        20.12        53.10 
TCGA-02-0025 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 
       42.74        12.16        90.58         2.83        14.14         3.62 
TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 TCGA-02-0051 TCGA-02-0054 
       18.31         6.87        14.73         3.22        15.09         6.54 
TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 
       19.86         8.35         9.57         6.02        19.73        26.43 
TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 
       28.70        25.05         5.49        20.84        27.25        89.72 
TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 
       22.72        12.62        51.32         8.81        57.76        16.96 
TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 
        3.48        27.02        65.00        11.67        17.65        23.18 
TCGA-02-0113 TCGA-02-0115 TCGA-02-0116 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 
       92.65        15.65        48.95        16.93        17.72        10.75 
TCGA-02-0271 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0324 
       14.47        13.87        14.20        15.95        12.23         7.73 
TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0338 
       10.62         7.33        15.91        25.71         4.37        10.59 
TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 
       12.39        14.50        10.55        47.11        11.34         9.27 
TCGA-02-0451 TCGA-02-2466 TCGA-02-2483 TCGA-02-2485 TCGA-06-0119 TCGA-06-0122 
       16.21        16.80        15.32        15.45         2.70         6.15 
TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 
       20.38        47.61         6.94         3.98        22.72        33.67 
TCGA-06-0130 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 
       12.95        14.30        26.70        24.23        11.90         0.20 
TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 
       10.29         2.20        11.74         2.33        20.09        17.79 
TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 
       10.09         8.61        19.46        46.59        12.33        13.94 
TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 
       10.45         3.19        10.82         9.44        11.80         3.42 
TCGA-06-0165 TCGA-06-0166 TCGA-06-0169 TCGA-06-0173 TCGA-06-0175 TCGA-06-0176 
       10.65         5.85         3.29         4.47         4.04        91.00 
TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 
       88.14        20.25         3.65        69.90        73.84        27.22 
TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 
       44.58        15.42        10.42        38.96         4.67         7.40 
TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 
        5.56         0.39         7.66         8.42         7.63         7.40 
TCGA-06-0211 TCGA-06-0213 TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 
       11.84         0.53        13.64        13.32        20.42        48.69 
TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 TCGA-06-0412 
       10.82         9.01         0.26        72.36         4.70         9.57 
TCGA-06-0413 TCGA-06-0644 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 
        3.16        12.62         5.75         9.80         2.10        23.57 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 
        7.86         2.70         0.92        43.46        46.19         5.65 
TCGA-06-0878 TCGA-06-0881 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1800 
        7.17        16.57        26.76        23.93         6.84        26.79 
TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-1806 TCGA-06-2558 
       11.84        15.32        13.61        33.90        15.32        12.49 
TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 
        4.93        17.65        12.56        30.64         5.95        16.64 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       31.50        11.74         3.55         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 TCGA-06-5856 TCGA-06-5858 TCGA-06-6388 
        8.98         8.55         6.71         3.75         6.15         5.23 
TCGA-06-6390 TCGA-06-6391 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6699 
        5.39         1.48         7.36         8.32        12.85         1.55 
TCGA-06-6701 TCGA-06-A5U0 TCGA-06-A5U1 TCGA-06-A7TK TCGA-06-A7TL TCGA-08-0244 
        4.96         4.70         1.87         5.39         5.42        22.68 
TCGA-08-0245 TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 
       37.84         4.18       115.86         1.74         8.42        25.71 
TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0354 
       12.16         9.80        29.23        65.33         1.28        17.95 
TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 
       24.56        31.10        37.58        22.29         3.39        12.23 
TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 TCGA-08-0510 TCGA-08-0514 
       14.93        18.02        15.35        13.97         4.27        11.08 
TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 TCGA-08-0521 TCGA-08-0524 TCGA-08-0529 
       19.59        58.68        19.33         4.80         7.27        18.41 
TCGA-08-0531 TCGA-12-0615 TCGA-12-0616 TCGA-12-0620 TCGA-12-0656 TCGA-12-0657 
        7.56        15.35        14.73        10.45        94.78         0.10 
TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0703 TCGA-12-0707 
       38.17        25.97        26.66        12.13        20.38        28.41 
TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 
       15.06        53.85        43.23         7.63         9.73        14.93 
TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 
       14.86        91.76        24.79        18.48        10.62        23.51 
TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1089 TCGA-12-1090 TCGA-12-1092 
       38.76         8.94        20.58         5.82         7.59        21.73 
TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 
       15.98        12.23        15.85         9.11        14.53         3.98 
TCGA-12-1598 TCGA-12-1599 TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 
       15.65        25.68         6.77        59.77        44.02        26.93 
TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-5299 TCGA-14-0740 TCGA-14-0781 
       10.95        12.69        34.92         3.22        11.97         0.95 
TCGA-14-0783 TCGA-14-0786 TCGA-14-0789 TCGA-14-0790 TCGA-14-0817 TCGA-14-0865 
        6.21        23.05        11.24        13.78         5.39        16.50 
TCGA-14-0866 TCGA-14-0867 TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 
       26.33         2.04        15.95        19.30         0.79         1.38 
TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 
        1.12         3.75        32.05        58.78        23.11         7.10 
TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 
       30.18         0.92        40.96         6.67        12.43         0.99 
TCGA-14-1795 TCGA-14-1821 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2555 
        1.97        17.79         7.63         5.88         7.17         7.96 
TCGA-14-3477 TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 TCGA-15-1447 
        3.78         3.42        13.78        50.53        19.10        53.19 
TCGA-15-1449 TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 
       13.28         3.91        17.59        26.07        16.37         4.31 
TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 
        4.57        10.29        14.01         9.14        21.24        13.97 
TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 
        6.41        11.77        21.90         8.61         0.66        14.27 
TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 TCGA-19-1390 
        3.39        10.75         9.07         5.95        12.95        25.38 
TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 
        7.17        12.66         3.25         0.13         9.67         4.87 
TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 
        1.08         7.53         0.16         4.08        24.23         7.00 
TCGA-19-4065 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5954 TCGA-19-5958 
        7.04        17.19         8.02        18.90        12.10        14.07 
TCGA-19-5959 TCGA-19-5960 TCGA-19-A60I TCGA-19-A6J4 TCGA-19-A6J5 TCGA-26-1438 
       16.80        14.96        17.79         3.98        28.54        10.03 
TCGA-26-1439 TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 
       13.87         9.73        31.33         7.13         9.37         9.40 
TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 
       14.86         5.49         8.88        18.97         1.58         7.92 
TCGA-26-6174 TCGA-26-A7UX TCGA-27-1830 TCGA-27-1831 TCGA-27-1833 TCGA-27-1834 
        2.33        19.33         5.06        16.60        24.23        40.54 
TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 
       21.30        30.05        14.04        11.51        24.76        10.39 
TCGA-27-2523 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 
       16.08         2.86        14.40        15.78         0.20         2.53 
TCGA-28-1749 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1756 TCGA-28-1757 
        9.21         7.63         8.48         1.22         2.83         0.13 
TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5207 
        0.66         6.74         4.77         7.30         5.26        11.28 
TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 
       17.88        14.53        11.77        31.27        23.44        11.01 
TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1976 
        5.16        22.68        12.76         5.42        15.39         0.49 
TCGA-32-1977 TCGA-32-1979 TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 
        0.10        19.50         4.67        12.69        16.93        12.23 
TCGA-32-2495 TCGA-32-2615 TCGA-32-2616 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 
       15.02        15.95         7.36         8.84        22.78        25.18 
TCGA-32-4208 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 
       21.14        12.59        19.86        10.85        19.23         0.85 
TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-4097 
       13.35         8.94         9.53         0.99         4.44         0.20 
TCGA-41-6646 TCGA-4W-AA9S TCGA-4W-AA9T TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 
       12.46         4.14        14.76         3.45        20.91         4.34 
TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4929 TCGA-76-4931 
        8.22         7.50         4.80         4.54         3.65         9.17 
TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 
        2.53        10.78        16.70         3.29         2.70        11.38 
TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 
       17.06         8.35        20.98         4.83         5.03         0.23 
TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        9.27         7.73         7.79         1.61        17.72        26.30 
TCGA-RR-A6KA TCGA-RR-A6KC TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 
        6.28        20.55         4.70         7.69        43.89        18.15 
TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 
       10.62        64.64        40.18         0.10        21.01         9.96 
TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 
        6.38        17.69        23.84        17.95        12.43         8.48 
TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 
        7.56         8.02         7.40         6.61       122.73        81.96 
TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 
       75.25        47.93        72.92        50.17        44.52        36.56 
TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE 
       46.42        18.84        30.21        46.72        39.78        37.45 
TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P 
       33.57        72.95        31.63        24.20        25.48        30.12 
TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W 
        5.98        31.40        27.45        27.81        29.23        14.40 
TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75P TCGA-DH-5140 
       18.51        12.10        11.24        17.88        16.18        19.96 
TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A66B TCGA-DH-A66D 
       31.82        30.31        14.40         8.02        42.05        27.81 
TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU 
       17.19        17.19        54.25        13.12        13.38         3.45 
TCGA-DH-A7UV TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 
       18.61        14.56        17.46         6.74        13.38         8.45 
TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 
      182.33        18.94        17.49        15.16       211.17        52.11 
TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 
       22.42        49.02        75.16        46.06        65.75         1.22 
TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 
       87.45         7.04        11.64       133.74        19.89        16.83 
TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 
       94.52       114.08         7.96         7.73        11.47        62.96 
TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7013 TCGA-DU-7015 
      156.23       138.28        14.99       105.21         8.84        90.77 
TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 
       26.30        10.36         7.96        94.32        18.94        44.02 
TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 
       62.01        25.91        60.30        23.31        41.98         2.76 
TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8166 
        5.10        23.74        14.60        20.68        21.40        16.96 
TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU 
       14.17        14.24        12.59        15.12         4.96         3.65 
TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 
        5.65        12.20         8.65         2.70        77.98         7.23 
TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 
        5.98        11.41        26.76         7.13        21.30        17.98 
TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG 
      124.50        77.88        42.31        23.51         7.50        44.42 
TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5311 
        0.56        50.14        67.46        41.13        79.99       134.27 
TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YO TCGA-E1-A7YV TCGA-E1-A7YW 
       78.21        95.57       130.78        75.02        32.45        36.82 
TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 
       32.35        14.33         0.23         0.20        47.77        25.48 
TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 
       34.36        36.82        18.77        14.93        24.99        23.97 
TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 
       18.44        15.35        17.88        22.55        20.61        20.09 
TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 
       12.95        13.68        14.24        16.01        20.09        14.96 
TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MX TCGA-FG-A4MY 
       22.52        32.61        38.27        10.72        18.71        23.70 
TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 
       14.76        17.82        16.41        15.02        16.44        22.26 
TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N 
       28.54        10.78        36.66        48.69        20.45        13.58 
TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7470 TCGA-HT-7471 
        5.72        27.52         0.10         6.67        40.11         0.13 
TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 
        0.03        16.54         3.75        17.42         6.54        24.26 
TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 
        6.38        40.34        75.19        95.93       106.95       172.77 
TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 
        4.01         5.03        29.85        23.18       122.47         4.57 
TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 
       17.29         3.16        22.06        45.99        56.09        57.60 
TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 
        0.23        14.27         0.16        16.24         0.76        44.68 
TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 
        6.05        42.74         0.10        31.69        14.96         0.10 
TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 
        0.10         2.96        17.52         6.90        14.53        39.48 
TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 
       19.23        39.09         0.23        50.63         0.49        23.61 
TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 
       37.15         0.33         0.13         3.68         5.33        35.47 
TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8012 TCGA-HT-8013 
        3.72        11.28        31.43         1.64         9.40        63.55 
TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 
        0.10        37.87        33.01        12.23         6.25         0.10 
TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 
        0.46         2.50         5.56        13.78         0.23        29.59 
TCGA-HT-8114 TCGA-HT-8563 TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 
       34.19        28.27        26.04         0.13        20.22         0.07 
TCGA-HT-A5RA TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 
       27.35         5.33         2.70        16.93         1.81        16.14 
TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J 
       16.83        21.40        17.52        17.65         2.43        10.52 
TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 
       15.35        11.05         0.10        29.92        19.89         8.32 
TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7493 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 
       19.23        40.18        35.90         4.31        21.70        21.60 
TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM 
       19.59        17.82        20.35        12.76        20.81        20.71 
TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW 
       19.00        42.77        14.40        14.40         0.23         6.71 
TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 
        1.64         2.37         2.30         4.11         5.88         7.63 
TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 
        1.28         0.16        10.42        13.25        11.64         0.20 
TCGA-P5-A731 TCGA-P5-A733 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X 
        9.01        13.61        15.16         2.53        12.62        15.85 
TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX 
       14.04        19.33        14.83        14.53        13.61        12.23 
TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 
        2.20         9.17        10.29        14.53        16.34        16.73 
TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK 
        1.91        16.50         5.03        11.08        12.99        88.83 
TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z 
       94.03        32.65        59.38        30.87         5.46         9.90 
TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU 
       28.08         2.07        19.59        30.67        62.17        87.12 
TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 
       18.77        37.84        34.49        31.33        28.70        22.95 
TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6UA 
       17.62        23.64        32.61        16.08        98.24         5.85 
TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WI TCGA-S9-A6WL 
      106.39        69.50        72.59        80.12        84.99        31.10 
TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ 
       19.86        15.91        18.61        15.16        14.07        36.13 
TCGA-S9-A7IS TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 
        7.92        23.51         7.13        20.02         8.19         2.04 
TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 
       17.03        15.06        13.12        28.37        13.02       169.84 
TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-TM-A7C3 
       10.39        99.06        30.05        98.63        31.59        49.45 
TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C 
       48.33        49.32        34.78        48.39        24.92        16.18 
TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L 
       59.05        40.64        30.44        28.08        24.16        40.83 
TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T 
       24.79        33.24        25.38        18.61        14.93        23.80 
TCGA-TQ-A7RH TCGA-TQ-A7RW TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB 
       15.98        26.99        43.04        30.08        13.51         0.10 
TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS 
        7.89        35.93        23.47        37.05        16.01        23.21 
TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A 
        8.05        51.06        13.32        43.96        39.88        43.40 
TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       45.80        46.88        37.71        20.81 

  DEL PEAK 39(16Q23.1) MUTATED DEL PEAK 39(16Q23.1) WILD-TYPE 
                          0.10                           0.03 
  DEL PEAK 39(16Q23.1) MUTATED DEL PEAK 39(16Q23.1) WILD-TYPE 
                        127.59                         211.17 
  DEL PEAK 39(16Q23.1) MUTATED DEL PEAK 39(16Q23.1) WILD-TYPE 
                        12.920                         14.945 
[1] "0.1 - 127.6 (12.9)" "0.0 - 211.2 (14.9)"
[1] "hr=" "1.9"
D71V2, continuous
D71V3, binary
                                cls
clus                               0   1
  DEL PEAK 39(16Q23.1) MUTATED    99  24
  DEL PEAK 39(16Q23.1) WILD-TYPE 471 448
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 39(16Q23.1) MUTATED     99   24
  DEL PEAK 39(16Q23.1) WILD-TYPE  471  448
                        clus
vv                       DEL PEAK 39(16Q23.1) MUTATED
  BRAIN                                            99
  CENTRAL NERVOUS SYSTEM                           24
                        clus
vv                       DEL PEAK 39(16Q23.1) WILD-TYPE
  BRAIN                                             471
  CENTRAL NERVOUS SYSTEM                            448
[1] 2 2
[1] FALSE
D71V4, binary
                                cls
clus                               0   1
  DEL PEAK 39(16Q23.1) MUTATED    50  73
  DEL PEAK 39(16Q23.1) WILD-TYPE 380 539
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 39(16Q23.1) MUTATED     50   73
  DEL PEAK 39(16Q23.1) WILD-TYPE  380  539
        clus
vv       DEL PEAK 39(16Q23.1) MUTATED DEL PEAK 39(16Q23.1) WILD-TYPE
  FEMALE                           50                            380
  MALE                             73                            539
[1] 2 2
[1] FALSE
D71V5, continuous
                                vv
clus                             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  DEL PEAK 39(16Q23.1) MUTATED            13                             3
  DEL PEAK 39(16Q23.1) WILD-TYPE         163                            24
                                vv
clus                             OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  DEL PEAK 39(16Q23.1) MUTATED                  5                 6
  DEL PEAK 39(16Q23.1) WILD-TYPE              113               172
                                vv
clus                             TREATED PRIMARY GBM
  DEL PEAK 39(16Q23.1) MUTATED                     2
  DEL PEAK 39(16Q23.1) WILD-TYPE                  16
                                vv
clus                             UNTREATED PRIMARY (DE NOVO) GBM
  DEL PEAK 39(16Q23.1) MUTATED                                94
  DEL PEAK 39(16Q23.1) WILD-TYPE                             431
D71V6, multiclass
                                 clus
vv                                DEL PEAK 39(16Q23.1) MUTATED
  ASTROCYTOMA                                               13
  GLIOBLASTOMA MULTIFORME (GBM)                              3
  OLIGOASTROCYTOMA                                           5
  OLIGODENDROGLIOMA                                          6
  TREATED PRIMARY GBM                                        2
  UNTREATED PRIMARY (DE NOVO) GBM                           94
                                 clus
vv                                DEL PEAK 39(16Q23.1) WILD-TYPE
  ASTROCYTOMA                                                163
  GLIOBLASTOMA MULTIFORME (GBM)                               24
  OLIGOASTROCYTOMA                                           113
  OLIGODENDROGLIOMA                                          172
  TREATED PRIMARY GBM                                         16
  UNTREATED PRIMARY (DE NOVO) GBM                            431
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D71V7, binary
                                cls
clus                               0   1
  DEL PEAK 39(16Q23.1) MUTATED    63  60
  DEL PEAK 39(16Q23.1) WILD-TYPE 411 508
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 39(16Q23.1) MUTATED     63   60
  DEL PEAK 39(16Q23.1) WILD-TYPE  411  508
     clus
vv    DEL PEAK 39(16Q23.1) MUTATED DEL PEAK 39(16Q23.1) WILD-TYPE
  NO                            63                            411
  YES                           60                            508
[1] 2 2
[1] FALSE
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 39(16Q23.1) MUTATED                                  0     2
  DEL PEAK 39(16Q23.1) WILD-TYPE                                1    19
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 39(16Q23.1) MUTATED                          12   107
  DEL PEAK 39(16Q23.1) WILD-TYPE                        52   815
D71V8, multiclass
                                  clus
vv                                 DEL PEAK 39(16Q23.1) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            0
  ASIAN                                                       2
  BLACK OR AFRICAN AMERICAN                                  12
  WHITE                                                     107
                                  clus
vv                                 DEL PEAK 39(16Q23.1) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              1
  ASIAN                                                        19
  BLACK OR AFRICAN AMERICAN                                    52
  WHITE                                                       815
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D71V9, binary
                                cls
clus                               0   1
  DEL PEAK 39(16Q23.1) MUTATED     3 108
  DEL PEAK 39(16Q23.1) WILD-TYPE  27 783
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 39(16Q23.1) MUTATED      3  108
  DEL PEAK 39(16Q23.1) WILD-TYPE   27  783
                        clus
vv                       DEL PEAK 39(16Q23.1) MUTATED
  HISPANIC OR LATINO                                3
  NOT HISPANIC OR LATINO                          108
                        clus
vv                       DEL PEAK 39(16Q23.1) WILD-TYPE
  HISPANIC OR LATINO                                 27
  NOT HISPANIC OR LATINO                            783
[1] 2 2
[1] FALSE

Clustering(72) Variable = DEL PEAK 40(17P13.1) MUTATION ANALYSIS
D72V1, survival
                                sevent
clus2                              0   1
  DEL PEAK 40(17P13.1) MUTATED    29  83
  DEL PEAK 40(17P13.1) WILD-TYPE 451 476
  DEL PEAK 40(17P13.1) MUTATED DEL PEAK 40(17P13.1) WILD-TYPE 
                           112                            927 
  DEL PEAK 40(17P13.1) MUTATED DEL PEAK 40(17P13.1) WILD-TYPE 
                            83                            476 
$`DEL PEAK 40(17P13.1) MUTATED`
TCGA-02-0001 TCGA-02-0024 TCGA-02-0033 TCGA-02-0055 TCGA-02-0059 TCGA-02-0069 
       11.77        53.10         2.83         2.50         9.57        28.70 
TCGA-02-0079 TCGA-02-0086 TCGA-02-0104 TCGA-02-0106 TCGA-02-0113 TCGA-02-0115 
       27.25         8.81        65.00        11.67        92.65        15.65 
TCGA-02-0258 TCGA-02-0269 TCGA-02-0281 TCGA-02-0321 TCGA-02-0325 TCGA-02-0339 
       16.54        10.75         3.98         9.90        10.62        12.39 
TCGA-02-0456 TCGA-06-0130 TCGA-06-0147 TCGA-06-0149 TCGA-06-0152 TCGA-06-0159 
        3.35        12.95        17.79         8.61        12.33         9.44 
TCGA-06-0177 TCGA-06-0184 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 
        4.18        69.90        27.22        44.58        15.42        10.42 
TCGA-06-0192 TCGA-06-0197 TCGA-06-0206 TCGA-06-0213 TCGA-06-0241 TCGA-06-0397 
       38.96         5.56         7.66         0.53        48.69         9.01 
TCGA-06-0410 TCGA-06-0644 TCGA-06-0646 TCGA-06-0744 TCGA-06-0875 TCGA-06-1086 
        4.70        12.62         5.75        46.88        43.46         6.84 
TCGA-06-1087 TCGA-06-2557 TCGA-06-2558 TCGA-06-2561 TCGA-06-2569 TCGA-06-5408 
        4.04         1.08        12.49        17.65         0.43        11.74 
TCGA-06-6694 TCGA-06-A5U0 TCGA-08-0245 TCGA-08-0353 TCGA-08-0386 TCGA-08-0390 
        7.36         4.70        37.84         8.42        18.02        13.97 
TCGA-12-0619 TCGA-12-0772 TCGA-12-0826 TCGA-12-1098 TCGA-12-1598 TCGA-12-3646 
       34.92        53.85        27.78         3.98        15.65        44.02 
TCGA-12-3653 TCGA-14-0783 TCGA-14-0871 TCGA-14-1034 TCGA-14-1396 TCGA-14-1453 
       14.53         6.21        28.93        15.95         1.12         1.15 
TCGA-14-1794 TCGA-14-3477 TCGA-15-1449 TCGA-16-0846 TCGA-19-0960 TCGA-19-1791 
        0.99         3.78        13.28         3.91         8.61         0.13 
TCGA-19-2623 TCGA-19-2629 TCGA-19-4065 TCGA-26-1442 TCGA-26-5133 TCGA-27-1835 
        7.53        24.23         7.04        31.33        14.86        21.30 
TCGA-28-1756 TCGA-28-2509 TCGA-28-5215 TCGA-32-1976 TCGA-32-1987 TCGA-32-2491 
        2.83         4.77        11.01         0.49        14.86        12.23 
TCGA-32-2616 TCGA-32-4210 TCGA-41-2573 TCGA-41-3392 TCGA-41-3915 TCGA-41-5651 
        7.36         3.72         8.94         0.99        11.84        15.12 
TCGA-4W-AA9S TCGA-76-4925 TCGA-76-4934 TCGA-76-6285 TCGA-76-6662 TCGA-DU-5853 
        4.14         4.80         2.53         8.35         9.27        13.38 
TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-7010 TCGA-DU-8161 TCGA-DU-8165 TCGA-DU-A5TP 
        1.22        87.45        14.99        23.74        19.13        14.24 
TCGA-FG-A4MY TCGA-FG-A60J TCGA-HT-7689 TCGA-HT-8106 TCGA-HT-8564 TCGA-HT-A4DS 
       23.70        14.76        14.96         0.10        15.72         0.23 
TCGA-IK-7675 TCGA-P5-A5EZ TCGA-P5-A5F6 TCGA-TM-A84J 
       19.00         2.30         1.28        24.16 

$`DEL PEAK 40(17P13.1) WILD-TYPE`
TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 TCGA-02-0011 
        4.73        18.35        23.18        10.59        35.41        20.71 
TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0025 
       82.59        20.61        87.06        77.65        20.12        42.74 
TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 
       24.59        12.16        90.58        14.14         3.62        10.72 
TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 TCGA-02-0051 
       10.52        18.31         6.87        14.73         3.22        15.09 
TCGA-02-0052 TCGA-02-0054 TCGA-02-0057 TCGA-02-0058 TCGA-02-0060 TCGA-02-0064 
       12.59         6.54        19.86         8.35         6.02        19.73 
TCGA-02-0068 TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0080 
       26.43        25.05         5.49        10.19        20.84        89.72 
TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 
       22.72        12.62        51.32        57.76        16.96         3.48 
TCGA-02-0102 TCGA-02-0107 TCGA-02-0111 TCGA-02-0114 TCGA-02-0116 TCGA-02-0260 
       27.02        17.65        23.18        99.98        48.95        16.93 
TCGA-02-0266 TCGA-02-0271 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 
       17.72        14.47        13.87        14.20        15.95        12.23 
TCGA-02-0324 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 
        7.73         7.33        15.91        25.71         4.37        25.12 
TCGA-02-0338 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 
       10.59        14.50        10.55        47.11        11.34         9.27 
TCGA-02-0451 TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 
       16.21        16.80        12.92        15.32        15.45        20.32 
TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 
        2.70         6.15        20.38        47.61         6.94         3.98 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 
       22.72        33.67        25.35        14.30        26.70        24.23 
TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 
       11.90         0.20        10.29         2.20        11.74         2.33 
TCGA-06-0146 TCGA-06-0148 TCGA-06-0150 TCGA-06-0151 TCGA-06-0154 TCGA-06-0155 
       20.09        10.09        19.46        46.59        13.94        10.45 
TCGA-06-0157 TCGA-06-0158 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 
        3.19        10.82        11.80         3.42        56.91        10.65 
TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 
        5.85        19.66         3.29        13.12         4.47         3.22 
TCGA-06-0175 TCGA-06-0176 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0185 
        4.04        91.00        88.14        20.25         3.65        73.84 
TCGA-06-0194 TCGA-06-0195 TCGA-06-0201 TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 
        4.67         7.40         0.39         8.42         7.63         7.40 
TCGA-06-0211 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 
       11.84        15.02        24.16         0.72        19.82        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0394 TCGA-06-0402 TCGA-06-0409 TCGA-06-0412 
       13.32        20.42        10.82         0.26        72.36         9.57 
TCGA-06-0413 TCGA-06-0414 TCGA-06-0645 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 
        3.16        35.11         5.75         9.80         2.10        23.57 
TCGA-06-0686 TCGA-06-0743 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 
       14.20        26.40         7.86         2.70         2.70         0.92 
TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 
       46.19         5.65         7.17        40.41        16.57        20.78 
TCGA-06-0939 TCGA-06-1084 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 
       26.76        23.93        26.79        11.84        15.32        13.61 
TCGA-06-1805 TCGA-06-1806 TCGA-06-2559 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 
       33.90        15.32         4.93        12.56        30.64         5.95 
TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2570 TCGA-06-5410 TCGA-06-5411 
       16.64         5.98         4.37        31.50         3.55         8.35 
TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 
        4.54         8.81         8.98         8.55         6.71         2.73 
TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 
        3.75         6.15         4.57         5.23         7.79         5.39 
TCGA-06-6391 TCGA-06-6693 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 
        1.48       120.56         8.32        12.85         4.77         1.55 
TCGA-06-6700 TCGA-06-6701 TCGA-06-A5U1 TCGA-06-A6S0 TCGA-06-A6S1 TCGA-06-A7TK 
        4.77         4.96         1.87         3.12         2.56         5.39 
TCGA-06-A7TL TCGA-08-0244 TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 
        5.42        22.68         4.18       115.86         1.74         8.42 
TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 
       25.71        12.16         9.80        29.23        65.33         1.28 
TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 
       17.95        24.56        31.10        37.58        22.29         3.39 
TCGA-08-0375 TCGA-08-0380 TCGA-08-0389 TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 
       12.23        14.93        15.35         0.72        12.56         4.27 
TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 
       42.15        11.08        19.59        58.68        19.33        10.75 
TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 
        4.80         7.27        15.98        18.41         7.56        15.35 
TCGA-12-0616 TCGA-12-0618 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 
       14.73        12.99        10.45         7.59        94.78         0.10 
TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 
       38.17        25.97        26.66        12.13         3.65        20.38 
TCGA-12-0707 TCGA-12-0769 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 
       28.41        15.06        43.23         7.63         9.73        14.93 
TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 
       14.86        91.76        24.79        18.48        10.62        23.51 
TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 
       38.76         8.94        20.58       127.59         5.82         7.59 
TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 
       33.21        21.73        15.98        12.23        15.85         9.11 
TCGA-12-1097 TCGA-12-1099 TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 
       14.53         4.14        25.68        14.73         6.77        59.77 
TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-5295 
       26.93        15.22        10.95        12.69        34.92        14.93 
TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 
        3.22         2.04        15.12        11.97         0.95        23.05 
TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 
        2.24        11.24        13.78         3.25         1.35         5.39 
TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 TCGA-14-0867 TCGA-14-1037 TCGA-14-1043 
        2.89        16.50        26.33         2.04        19.30         0.79 
TCGA-14-1395 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 
        1.38         3.75        32.05        58.78        23.11         7.10 
TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1795 
       30.18         0.92        40.96         6.67        12.43         1.97 
TCGA-14-1821 TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 
       17.79        17.85         7.63         5.88         7.17        17.49 
TCGA-14-2555 TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 TCGA-15-1447 
        7.96         3.42        13.78        50.53        19.10        53.19 
TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 
       17.59        26.07        16.37         4.31        29.03         4.57 
TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 
       10.29        14.01         9.14        21.24        13.97         6.41 
TCGA-19-0955 TCGA-19-0957 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 
       11.77        21.90         0.66        14.27         3.39        10.75 
TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 TCGA-19-1390 TCGA-19-1392 
        9.07         5.95        12.95         4.64        25.38         3.65 
TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 
        7.17        12.66         3.25         9.67         4.87         1.08 
TCGA-19-2624 TCGA-19-2625 TCGA-19-2631 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 
        0.16         4.08         7.00         6.64        17.19         8.02 
TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 
       18.90         4.73        12.10         1.78        22.49        14.07 
TCGA-19-5959 TCGA-19-5960 TCGA-19-A60I TCGA-19-A6J4 TCGA-19-A6J5 TCGA-26-1438 
       16.80        14.96        17.79         3.98        28.54        10.03 
TCGA-26-1439 TCGA-26-1440 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5134 
       13.87         9.73         7.13         9.37         9.40         5.49 
TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-26-A7UX 
        8.88        18.97         1.58         7.92         2.33        19.33 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1836 
        5.06        16.60         9.86        24.23        40.54        30.05 
TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 
       14.04        11.51        24.76        10.39        10.39        16.08 
TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 
        7.59         2.86        14.40        15.78         0.20         2.53 
TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 
        9.21         8.35         7.63         8.48         1.22         1.55 
TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 
        0.13         0.66         6.74         7.30         5.26        14.93 
TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 
       11.28        17.88        14.53        11.77        31.27        23.44 
TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 
       13.64         5.16        22.68        12.76         5.42        15.39 
TCGA-32-1973 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 
       21.07         0.10        15.85        19.50         1.18         4.67 
TCGA-32-1986 TCGA-32-1991 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 
       12.69        16.93        20.78        15.02        15.95         8.84 
TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 
       22.78        25.18        21.14        12.59        19.86        10.85 
TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2575 TCGA-41-3393 TCGA-41-4097 
       19.23         0.85        13.35         9.53         4.44         0.20 
TCGA-41-6646 TCGA-4W-AA9T TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 
       12.46        14.76         3.45        20.91         4.34        14.33 
TCGA-74-6581 TCGA-74-6584 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 
        8.22         7.50         4.54         3.09         3.65         9.17 
TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 
       10.78        16.70         3.29         2.70        11.38        17.06 
TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6663 TCGA-76-6664 
       20.98         4.83         5.03         0.23         7.73         7.79 
TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 TCGA-OX-A56R TCGA-RR-A6KA TCGA-RR-A6KC 
        1.61        17.72        26.30         5.92         6.28        20.55 
TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 
        4.70         7.69        43.89        18.15        10.62        64.64 
TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 
       40.18         0.10        21.01         9.96         6.38        17.69 
TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 
       23.84        17.95        12.43         8.48         7.56         8.02 
TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 
        7.40         6.61       122.73        81.96        75.25        47.93 
TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 
       72.92        50.86        50.17        44.52        36.56        78.28 
TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE 
       46.42        18.84        30.21        46.72        39.78        37.45 
TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P 
       33.57        72.95        31.63        24.20        25.48        30.12 
TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W 
        5.98        31.40        27.45        27.81        29.23        14.40 
TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P 
       18.51        12.10        11.24        17.88        30.74        16.18 
TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 
       19.96        31.82        30.31        14.40         8.02        30.21 
TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US 
       42.05        27.81        17.19        17.19        54.25        13.12 
TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 
       13.38         3.45        18.61        18.02        14.56        17.46 
TCGA-DU-5852 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 
        6.74         8.45         6.81       182.33        18.94        17.49 
TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 
       15.16       211.17        52.11        22.42        49.02        75.16 
TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 
       46.06        65.75         7.04        11.64       133.74        19.89 
TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 
       16.83        94.52       114.08         7.96         7.73        11.47 
TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 
       62.96       156.23       138.28       105.21         6.54         8.84 
TCGA-DU-7014 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 
      117.40        90.77        30.67        26.30        10.36         7.96 
TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 
       94.32        18.94        44.02        62.01        25.91        60.30 
TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8162 TCGA-DU-8163 
       23.31        41.98         2.76         5.10        14.60        20.68 
TCGA-DU-8164 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TR TCGA-DU-A5TS 
       21.40        16.96        15.48        14.17        12.59        15.12 
TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 
        4.96         3.65         5.65        12.20         8.65         2.70 
TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O 
       77.98         7.23         5.98        11.41        26.76         7.13 
TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC 
       21.30        17.98       124.50        77.88        42.31        23.51 
TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 
        7.50        44.42         0.56        50.14        67.46        41.13 
TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 
       79.99        57.93       134.27        78.21        95.57       130.78 
TCGA-E1-A7YO TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 
       75.02        32.45        36.82        32.35        14.33         0.23 
TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 
        0.20        47.77        25.48        34.36        36.82        18.77 
TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 
       14.93        24.99        23.97        18.44        15.35        17.88 
TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 
       22.55        20.61        20.09        12.95        13.68        14.24 
TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT 
       16.01        20.09        14.96        22.52        32.61        38.27 
TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ 
       10.72        18.38        18.71        17.82        16.41        15.02 
TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 
       16.44        22.26        28.54        10.78        36.66        48.69 
TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 
       20.45        13.58         5.72        27.52         0.10         6.67 
TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 
       11.54        40.11         0.13         0.03        16.54         3.75 
TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 
       17.42         6.54        24.26         6.38        40.34        75.19 
TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 
       95.93       106.95       172.77         4.01         5.03        29.85 
TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 
       23.18       122.47         4.57        17.29         3.16        22.06 
TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 
       45.99        56.09        57.60         0.23        14.27         0.16 
TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 
       16.24         0.76        44.68         6.05        42.74         0.10 
TCGA-HT-7688 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 
       31.69         0.10         0.10         2.96        17.52         6.90 
TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 
       14.53        39.48        19.23        39.09         0.23        50.63 
TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 
        0.49        23.61        37.15         0.33         0.13         3.68 
TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 
        5.33        35.47         3.72        11.28        31.43         1.64 
TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 
       16.24         9.40        63.55         0.10        37.87        33.01 
TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 
       12.23         6.25         0.46         2.50         5.56        13.78 
TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8563 TCGA-HT-A4DV TCGA-HT-A5R5 
        0.23        29.59        34.19        28.27        26.04         0.13 
TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 
       20.22         0.07        27.35         0.10         5.33         2.70 
TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61B 
       16.93         1.81        16.14        16.83        21.40        17.52 
TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O 
       17.65         2.43        10.52        15.35        11.05         0.10 
TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7493 
       29.92        19.89         8.32        19.23        40.18        35.90 
TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ 
        4.31        21.70        21.60        19.59        17.82        20.35 
TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 
       12.76        20.81        20.71        42.77        14.40        14.40 
TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5F0 TCGA-P5-A5F1 
        0.23         6.71         1.64         2.37         4.11         5.88 
TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z 
        7.63         0.76         0.16        10.42        13.25        11.64 
TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V 
        0.20         9.01        13.61        15.16         2.53        12.62 
TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW 
       15.85        14.04        19.33        14.83        14.53        13.61 
TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 
       12.23         2.20         9.17        10.29        14.53        16.34 
TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 
       16.73         1.91        16.50         5.03        11.08        12.99 
TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y 
       88.83        94.03        32.65        59.38        30.87         5.46 
TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS 
        9.90        28.08         2.07        19.59        30.67        62.17 
TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ 
       87.12        18.77        37.84        34.49        31.33        28.70 
TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 
       22.95        17.62        23.64        32.61        16.08        98.24 
TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG 
       95.93         5.85       106.39        69.50        72.59        80.12 
TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO 
       32.45        84.99        31.10        19.86        15.91        18.61 
TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY 
       15.16        14.07        36.13         7.92        22.32        23.51 
TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW 
        7.13        20.02         8.19         2.04        17.03        15.06 
TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 
       13.12        28.37        13.02       169.84        10.39        99.06 
TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 
       30.05        98.63        31.59        18.71        11.97        49.45 
TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C 
       48.33        49.32        34.78        48.39        24.92        16.18 
TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84L TCGA-TM-A84M 
       59.05        40.64        30.44        28.08        40.83        24.79 
TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RH 
       33.24        25.38        18.61        14.93        23.80        15.98 
TCGA-TQ-A7RW TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD 
       26.99        43.04        30.08        13.51         0.10         7.89 
TCGA-VM-A8CE TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI 
       35.93        23.47        37.05        16.01        23.21         8.05 
TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B 
       51.06        13.32        43.96        39.88        43.40        45.80 
TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       46.88        37.71        20.81 

  DEL PEAK 40(17P13.1) MUTATED DEL PEAK 40(17P13.1) WILD-TYPE 
                          0.10                           0.03 
  DEL PEAK 40(17P13.1) MUTATED DEL PEAK 40(17P13.1) WILD-TYPE 
                         92.65                         211.17 
  DEL PEAK 40(17P13.1) MUTATED DEL PEAK 40(17P13.1) WILD-TYPE 
                        11.705                         15.060 
[1] "0.1 - 92.7 (11.7)"  "0.0 - 211.2 (15.1)"
[1] "hr=" "2"  
D72V2, continuous
D72V3, binary
                                cls
clus                               0   1
  DEL PEAK 40(17P13.1) MUTATED    95  17
  DEL PEAK 40(17P13.1) WILD-TYPE 475 455
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 40(17P13.1) MUTATED     95   17
  DEL PEAK 40(17P13.1) WILD-TYPE  475  455
                        clus
vv                       DEL PEAK 40(17P13.1) MUTATED
  BRAIN                                            95
  CENTRAL NERVOUS SYSTEM                           17
                        clus
vv                       DEL PEAK 40(17P13.1) WILD-TYPE
  BRAIN                                             475
  CENTRAL NERVOUS SYSTEM                            455
[1] 2 2
[1] FALSE
D72V4, binary
                                cls
clus                               0   1
  DEL PEAK 40(17P13.1) MUTATED    54  58
  DEL PEAK 40(17P13.1) WILD-TYPE 376 554
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 40(17P13.1) MUTATED     54   58
  DEL PEAK 40(17P13.1) WILD-TYPE  376  554
        clus
vv       DEL PEAK 40(17P13.1) MUTATED DEL PEAK 40(17P13.1) WILD-TYPE
  FEMALE                           54                            376
  MALE                             58                            554
[1] 2 2
[1] FALSE
D72V5, continuous
                                vv
clus                             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  DEL PEAK 40(17P13.1) MUTATED             6                             3
  DEL PEAK 40(17P13.1) WILD-TYPE         170                            24
                                vv
clus                             OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  DEL PEAK 40(17P13.1) MUTATED                  4                 7
  DEL PEAK 40(17P13.1) WILD-TYPE              114               171
                                vv
clus                             TREATED PRIMARY GBM
  DEL PEAK 40(17P13.1) MUTATED                     3
  DEL PEAK 40(17P13.1) WILD-TYPE                  15
                                vv
clus                             UNTREATED PRIMARY (DE NOVO) GBM
  DEL PEAK 40(17P13.1) MUTATED                                89
  DEL PEAK 40(17P13.1) WILD-TYPE                             436
D72V6, multiclass
                                 clus
vv                                DEL PEAK 40(17P13.1) MUTATED
  ASTROCYTOMA                                                6
  GLIOBLASTOMA MULTIFORME (GBM)                              3
  OLIGOASTROCYTOMA                                           4
  OLIGODENDROGLIOMA                                          7
  TREATED PRIMARY GBM                                        3
  UNTREATED PRIMARY (DE NOVO) GBM                           89
                                 clus
vv                                DEL PEAK 40(17P13.1) WILD-TYPE
  ASTROCYTOMA                                                170
  GLIOBLASTOMA MULTIFORME (GBM)                               24
  OLIGOASTROCYTOMA                                           114
  OLIGODENDROGLIOMA                                          171
  TREATED PRIMARY GBM                                         15
  UNTREATED PRIMARY (DE NOVO) GBM                            436
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D72V7, binary
                                cls
clus                               0   1
  DEL PEAK 40(17P13.1) MUTATED    62  50
  DEL PEAK 40(17P13.1) WILD-TYPE 412 518
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 40(17P13.1) MUTATED     62   50
  DEL PEAK 40(17P13.1) WILD-TYPE  412  518
     clus
vv    DEL PEAK 40(17P13.1) MUTATED DEL PEAK 40(17P13.1) WILD-TYPE
  NO                            62                            412
  YES                           50                            518
[1] 2 2
[1] FALSE
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 40(17P13.1) MUTATED                                  0     2
  DEL PEAK 40(17P13.1) WILD-TYPE                                1    19
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 40(17P13.1) MUTATED                           9    99
  DEL PEAK 40(17P13.1) WILD-TYPE                        55   823
D72V8, multiclass
                                  clus
vv                                 DEL PEAK 40(17P13.1) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            0
  ASIAN                                                       2
  BLACK OR AFRICAN AMERICAN                                   9
  WHITE                                                      99
                                  clus
vv                                 DEL PEAK 40(17P13.1) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              1
  ASIAN                                                        19
  BLACK OR AFRICAN AMERICAN                                    55
  WHITE                                                       823
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D72V9, binary
                                cls
clus                               0   1
  DEL PEAK 40(17P13.1) MUTATED     5  96
  DEL PEAK 40(17P13.1) WILD-TYPE  25 795
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 40(17P13.1) MUTATED      5   96
  DEL PEAK 40(17P13.1) WILD-TYPE   25  795
                        clus
vv                       DEL PEAK 40(17P13.1) MUTATED
  HISPANIC OR LATINO                                5
  NOT HISPANIC OR LATINO                           96
                        clus
vv                       DEL PEAK 40(17P13.1) WILD-TYPE
  HISPANIC OR LATINO                                 25
  NOT HISPANIC OR LATINO                            795
[1] 2 2
[1] FALSE

Clustering(73) Variable = DEL PEAK 41(17Q11.2) MUTATION ANALYSIS
D73V1, survival
                                sevent
clus2                              0   1
  DEL PEAK 41(17Q11.2) MUTATED    24  66
  DEL PEAK 41(17Q11.2) WILD-TYPE 456 493
  DEL PEAK 41(17Q11.2) MUTATED DEL PEAK 41(17Q11.2) WILD-TYPE 
                            90                            949 
  DEL PEAK 41(17Q11.2) MUTATED DEL PEAK 41(17Q11.2) WILD-TYPE 
                            66                            493 
$`DEL PEAK 41(17Q11.2) MUTATED`
TCGA-02-0001 TCGA-02-0033 TCGA-02-0039 TCGA-02-0055 TCGA-02-0059 TCGA-02-0079 
       11.77         2.83        10.52         2.50         9.57        27.25 
TCGA-02-0086 TCGA-02-0106 TCGA-02-0113 TCGA-02-0115 TCGA-02-0258 TCGA-02-0269 
        8.81        11.67        92.65        15.65        16.54        10.75 
TCGA-02-0456 TCGA-06-0130 TCGA-06-0147 TCGA-06-0149 TCGA-06-0152 TCGA-06-0159 
        3.35        12.95        17.79         8.61        12.33         9.44 
TCGA-06-0164 TCGA-06-0166 TCGA-06-0175 TCGA-06-0177 TCGA-06-0184 TCGA-06-0187 
       56.91         5.85         4.04         4.18        69.90        27.22 
TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0197 TCGA-06-0206 TCGA-06-0644 
       15.42        10.42        38.96         5.56         7.66        12.62 
TCGA-06-0744 TCGA-06-0882 TCGA-06-2569 TCGA-06-5408 TCGA-06-6697 TCGA-08-0353 
       46.88        20.78         0.43        11.74        12.85         8.42 
TCGA-08-0386 TCGA-08-0390 TCGA-08-0512 TCGA-12-0619 TCGA-12-0703 TCGA-12-0772 
       18.02        13.97        42.15        34.92        20.38        53.85 
TCGA-12-0775 TCGA-12-0826 TCGA-12-1098 TCGA-12-3653 TCGA-14-0862 TCGA-14-0871 
        7.63        27.78         3.98        14.53         2.89        28.93 
TCGA-14-1034 TCGA-14-1396 TCGA-14-1453 TCGA-15-1447 TCGA-19-2623 TCGA-19-4065 
       15.95         1.12         1.15        53.19         7.53         7.04 
TCGA-19-5947 TCGA-19-5953 TCGA-19-A60I TCGA-26-5133 TCGA-27-2527 TCGA-28-2502 
        6.64         4.73        17.79        14.86        14.40         0.66 
TCGA-28-2509 TCGA-32-1986 TCGA-32-2491 TCGA-41-3392 TCGA-41-4097 TCGA-41-5651 
        4.77        12.69        12.23         0.99         0.20        15.12 
TCGA-4W-AA9S TCGA-74-6573 TCGA-76-4934 TCGA-76-6285 TCGA-CS-5397 TCGA-DU-6400 
        4.14         3.45         2.53         8.35         6.38         1.22 
TCGA-DU-7010 TCGA-DU-7298 TCGA-DU-8161 TCGA-DU-8165 TCGA-FG-A4MY TCGA-FG-A60J 
       14.99        18.94        23.74        19.13        23.70        14.76 
TCGA-HT-7477 TCGA-HT-7689 TCGA-HT-8106 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A617 
       24.26        14.96         0.10        15.72         0.23        16.14 
TCGA-IK-7675 TCGA-P5-A5EV TCGA-P5-A5EZ TCGA-P5-A5F6 TCGA-QH-A6CS TCGA-VM-A8CD 
       19.00         0.23         2.30         1.28        19.33         7.89 

$`DEL PEAK 41(17Q11.2) WILD-TYPE`
TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 TCGA-02-0011 
        4.73        18.35        23.18        10.59        35.41        20.71 
TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 
       82.59        20.61        87.06        77.65        20.12        53.10 
TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0034 TCGA-02-0037 
       42.74        24.59        12.16        90.58        14.14         3.62 
TCGA-02-0038 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 TCGA-02-0051 
       10.72        18.31         6.87        14.73         3.22        15.09 
TCGA-02-0052 TCGA-02-0054 TCGA-02-0057 TCGA-02-0058 TCGA-02-0060 TCGA-02-0064 
       12.59         6.54        19.86         8.35         6.02        19.73 
TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 
       26.43        28.70        25.05         5.49        10.19        20.84 
TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0087 TCGA-02-0089 
       89.72        22.72        12.62        51.32        57.76        16.96 
TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0107 TCGA-02-0111 TCGA-02-0114 
        3.48        27.02        65.00        17.65        23.18        99.98 
TCGA-02-0116 TCGA-02-0260 TCGA-02-0266 TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 
       48.95        16.93        17.72        14.47         3.98        13.87 
TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 
       14.20        15.95        12.23         9.90         7.73        10.62 
TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 
        7.33        15.91        25.71         4.37        25.12        10.59 
TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 
       12.39        14.50        10.55        47.11        11.34         9.27 
TCGA-02-0451 TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 
       16.21        16.80        12.92        15.32        15.45        20.32 
TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 
        2.70         6.15        20.38        47.61         6.94         3.98 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 
       22.72        33.67        25.35        14.30        26.70        24.23 
TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 
       11.90         0.20        10.29         2.20        11.74         2.33 
TCGA-06-0146 TCGA-06-0148 TCGA-06-0150 TCGA-06-0151 TCGA-06-0154 TCGA-06-0155 
       20.09        10.09        19.46        46.59        13.94        10.45 
TCGA-06-0157 TCGA-06-0158 TCGA-06-0160 TCGA-06-0162 TCGA-06-0165 TCGA-06-0168 
        3.19        10.82        11.80         3.42        10.65        19.66 
TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0176 TCGA-06-0178 
        3.29        13.12         4.47         3.22        91.00        88.14 
TCGA-06-0179 TCGA-06-0182 TCGA-06-0185 TCGA-06-0188 TCGA-06-0194 TCGA-06-0195 
       20.25         3.65        73.84        44.58         4.67         7.40 
TCGA-06-0201 TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 
        0.39         8.42         7.63         7.40        11.84         0.53 
TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 
       15.02        24.16         0.72        19.82        13.64        13.32 
TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 
       20.42        48.69        10.82         9.01         0.26        72.36 
TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 TCGA-06-0645 TCGA-06-0646 
        4.70         9.57         3.16        35.11         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0745 
        9.80         2.10        23.57        14.20        26.40         7.86 
TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 
        2.70         2.70         0.92        43.46        46.19         5.65 
TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 
        7.17        40.41        16.57        26.76        23.93         6.84 
TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 
        4.04        26.79        11.84        15.32        13.61        33.90 
TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 
       15.32         1.08        12.49         4.93        17.65        12.56 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2570 
       30.64         5.95        16.64         5.98         4.37        31.50 
TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 
        3.55         8.35         4.54         8.81         8.98         8.55 
TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 
        6.71         2.73         3.75         6.15         4.57         5.23 
TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 
        7.79         5.39         1.48       120.56         7.36         8.32 
TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-06-A5U0 TCGA-06-A5U1 
        4.77         1.55         4.77         4.96         4.70         1.87 
TCGA-06-A6S0 TCGA-06-A6S1 TCGA-06-A7TK TCGA-06-A7TL TCGA-08-0244 TCGA-08-0245 
        3.12         2.56         5.39         5.42        22.68        37.84 
TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 
        4.18       115.86         1.74         8.42        25.71        12.16 
TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0354 TCGA-08-0355 
        9.80        29.23        65.33         1.28        17.95        24.56 
TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 
       31.10        37.58        22.29         3.39        12.23        14.93 
TCGA-08-0389 TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 TCGA-08-0514 TCGA-08-0516 
       15.35         0.72        12.56         4.27        11.08        19.59 
TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 
       58.68        19.33        10.75         4.80         7.27        15.98 
TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0620 
       18.41         7.56        15.35        14.73        12.99        10.45 
TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 
        7.59        94.78         0.10        38.17        25.97        26.66 
TCGA-12-0691 TCGA-12-0692 TCGA-12-0707 TCGA-12-0769 TCGA-12-0773 TCGA-12-0776 
       12.13         3.65        28.41        15.06        43.23         9.73 
TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 
       14.93        14.86        91.76        24.79        18.48        10.62 
TCGA-12-0822 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 
       23.51        38.76         8.94        20.58       127.59         5.82 
TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 
        7.59        33.21        21.73        15.98        12.23        15.85 
TCGA-12-1096 TCGA-12-1097 TCGA-12-1099 TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 
        9.11        14.53         4.14        15.65        25.68        14.73 
TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 
        6.77        59.77        44.02        26.93        15.22        10.95 
TCGA-12-3651 TCGA-12-3652 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 
       12.69        34.92        14.93         3.22         2.04        15.12 
TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 
       11.97         0.95         6.21        23.05         2.24        11.24 
TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 TCGA-14-0865 TCGA-14-0866 
       13.78         3.25         1.35         5.39        16.50        26.33 
TCGA-14-0867 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1401 TCGA-14-1402 
        2.04        19.30         0.79         1.38         3.75        32.05 
TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 
       58.78        23.11         7.10        30.18         0.92        40.96 
TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 TCGA-14-1823 
        6.67        12.43         0.99         1.97        17.79        17.85 
TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-3477 
        7.63         5.88         7.17        17.49         7.96         3.78 
TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 TCGA-15-1449 TCGA-16-0846 
        3.42        13.78        50.53        19.10        13.28         3.91 
TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 
       17.59        26.07        16.37         4.31        29.03         4.57 
TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 
       10.29        14.01         9.14        21.24        13.97         6.41 
TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 
       11.77        21.90         8.61         0.66        14.27         3.39 
TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 TCGA-19-1390 
       10.75         9.07         5.95        12.95         4.64        25.38 
TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 
        3.65         7.17        12.66         3.25         0.13         9.67 
TCGA-19-2620 TCGA-19-2621 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 
        4.87         1.08         0.16         4.08        24.23         7.00 
TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 
       17.19         8.02        18.90        12.10         1.78        22.49 
TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-19-A6J4 TCGA-19-A6J5 TCGA-26-1438 
       14.07        16.80        14.96         3.98        28.54        10.03 
TCGA-26-1439 TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 
       13.87         9.73        31.33         7.13         9.37         9.40 
TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 
        5.49         8.88        18.97         1.58         7.92         2.33 
TCGA-26-A7UX TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 
       19.33         5.06        16.60         9.86        24.23        40.54 
TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 
       21.30        30.05        14.04        11.51        24.76        10.39 
TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2528 TCGA-28-1746 
       10.39        16.08         7.59         2.86        15.78         0.20 
TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 
        2.53         9.21         8.35         7.63         8.48         1.22 
TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2506 TCGA-28-2513 TCGA-28-2514 
        1.55         2.83         0.13         6.74         7.30         5.26 
TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 
       14.93        11.28        17.88        14.53        11.77        31.27 
TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 
       23.44        11.01        13.64         5.16        22.68        12.76 
TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 
        5.42        15.39        21.07         0.49         0.10        15.85 
TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1987 TCGA-32-1991 TCGA-32-2494 
       19.50         1.18         4.67        14.86        16.93        20.78 
TCGA-32-2495 TCGA-32-2615 TCGA-32-2616 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 
       15.02        15.95         7.36         8.84        22.78        25.18 
TCGA-32-4208 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 
       21.14         3.72        12.59        19.86        10.85        19.23 
TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3393 TCGA-41-3915 
        0.85        13.35         8.94         9.53         4.44        11.84 
TCGA-41-6646 TCGA-4W-AA9T TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 
       12.46        14.76        20.91         4.34        14.33         8.22 
TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 
        7.50         4.80         4.54         3.09         3.65         9.17 
TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 
       10.78        16.70         3.29         2.70        11.38        17.06 
TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 
       20.98         4.83         5.03         0.23         9.27         7.73 
TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 TCGA-OX-A56R TCGA-RR-A6KA 
        7.79         1.61        17.72        26.30         5.92         6.28 
TCGA-RR-A6KC TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 
       20.55         4.70         7.69        43.89        18.15        10.62 
TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-6186 
       64.64        40.18         0.10        21.01         9.96        17.69 
TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 
       23.84        17.95        12.43         8.48         7.56         8.02 
TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 
        7.40         6.61       122.73        81.96        75.25        47.93 
TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 
       72.92        50.86        50.17        44.52        36.56        78.28 
TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE 
       46.42        18.84        30.21        46.72        39.78        37.45 
TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P 
       33.57        72.95        31.63        24.20        25.48        30.12 
TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W 
        5.98        31.40        27.45        27.81        29.23        14.40 
TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P 
       18.51        12.10        11.24        17.88        30.74        16.18 
TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 
       19.96        31.82        30.31        14.40         8.02        30.21 
TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US 
       42.05        27.81        17.19        17.19        54.25        13.12 
TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 
       13.38         3.45        18.61        18.02        14.56        17.46 
TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 
        6.74        13.38         8.45         6.81       182.33        18.94 
TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 
       17.49        15.16       211.17        52.11        22.42        49.02 
TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 
       75.16        46.06        65.75        87.45         7.04        11.64 
TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 
      133.74        19.89        16.83        94.52       114.08         7.96 
TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7011 
        7.73        11.47        62.96       156.23       138.28       105.21 
TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7014 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 
        6.54         8.84       117.40        90.77        30.67        26.30 
TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 
       10.36         7.96        94.32        44.02        62.01        25.91 
TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8162 
       60.30        23.31        41.98         2.76         5.10        14.60 
TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP 
       20.68        21.40        16.96        15.48        14.17        14.24 
TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY 
       12.59        15.12         4.96         3.65         5.65        12.20 
TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K 
        8.65         2.70        77.98         7.23         5.98        11.41 
TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA 
       26.76         7.13        21.30        17.98       124.50        77.88 
TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 
       42.31        23.51         7.50        44.42         0.56        50.14 
TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 
       67.46        41.13        79.99        57.93       134.27        78.21 
TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YO TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7Z6 
       95.57       130.78        75.02        32.45        36.82        32.35 
TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 
       14.33         0.23         0.20        47.77        25.48        34.36 
TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 
       36.82        18.77        14.93        24.99        23.97        18.44 
TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 
       15.35        17.88        22.55        20.61        20.09        12.95 
TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 
       13.68        14.24        16.01        20.09        14.96        22.52 
TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A60K 
       32.61        38.27        10.72        18.38        18.71        17.82 
TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z 
       16.41        15.02        16.44        22.26        28.54        10.78 
TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 
       36.66        48.69        20.45        13.58         5.72        27.52 
TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 
        0.10         6.67        11.54        40.11         0.13         0.03 
TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7478 TCGA-HT-7479 
       16.54         3.75        17.42         6.54         6.38        40.34 
TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 
       75.19        95.93       106.95       172.77         4.01         5.03 
TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 
       29.85        23.18       122.47         4.57        17.29         3.16 
TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 
       22.06        45.99        56.09        57.60         0.23        14.27 
TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 
        0.16        16.24         0.76        44.68         6.05        42.74 
TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 
        0.10        31.69         0.10         0.10         2.96        17.52 
TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 
        6.90        14.53        39.48        19.23        39.09         0.23 
TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 
       50.63         0.49        23.61        37.15         0.33         0.13 
TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 
        3.68         5.33        35.47         3.72        11.28        31.43 
TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 
        1.64        16.24         9.40        63.55         0.10        37.87 
TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 
       33.01        12.23         6.25         0.46         2.50         5.56 
TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8563 TCGA-HT-A4DV 
       13.78         0.23        29.59        34.19        28.27        26.04 
TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC 
        0.13        20.22         0.07        27.35         0.10         5.33 
TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61B 
        2.70        16.93         1.81        16.83        21.40        17.52 
TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O 
       17.65         2.43        10.52        15.35        11.05         0.10 
TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7493 
       29.92        19.89         8.32        19.23        40.18        35.90 
TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ 
        4.31        21.70        21.60        19.59        17.82        20.35 
TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 
       12.76        20.81        20.71        42.77        14.40        14.40 
TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 
        6.71         1.64         2.37         4.11         5.88         7.63 
TCGA-P5-A5F4 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 
        0.76         0.16        10.42        13.25        11.64         0.20 
TCGA-P5-A731 TCGA-P5-A733 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X 
        9.01        13.61        15.16         2.53        12.62        15.85 
TCGA-QH-A65Z TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY 
       14.04        14.83        14.53        13.61        12.23         2.20 
TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 
        9.17        10.29        14.53        16.34        16.73         1.91 
TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML 
       16.50         5.03        11.08        12.99        88.83        94.03 
TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 
       32.65        59.38        30.87         5.46         9.90        28.08 
TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV 
        2.07        19.59        30.67        62.17        87.12        18.77 
TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 
       37.84        34.49        31.33        28.70        22.95        17.62 
TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA 
       23.64        32.61        16.08        98.24        95.93         5.85 
TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI 
      106.39        69.50        72.59        80.12        32.45        84.99 
TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ 
       31.10        19.86        15.91        18.61        15.16        14.07 
TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 
       36.13         7.92        22.32        23.51         7.13        20.02 
TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY 
        8.19         2.04        17.03        15.06        13.12        28.37 
TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 
       13.02       169.84        10.39        99.06        30.05        98.63 
TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 
       31.59        18.71        11.97        49.45        48.33        49.32 
TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G 
       34.78        48.39        24.92        16.18        59.05        40.64 
TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O 
       30.44        28.08        24.16        40.83        24.79        33.24 
TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RH TCGA-TQ-A7RW 
       25.38        18.61        14.93        23.80        15.98        26.99 
TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CE TCGA-VM-A8CH 
       43.04        30.08        13.51         0.10        35.93        23.47 
TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K 
       37.05        16.01        23.21         8.05        51.06        13.32 
TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D 
       43.96        39.88        43.40        45.80        46.88        37.71 
TCGA-WY-A85E 
       20.81 

  DEL PEAK 41(17Q11.2) MUTATED DEL PEAK 41(17Q11.2) WILD-TYPE 
                          0.10                           0.03 
  DEL PEAK 41(17Q11.2) MUTATED DEL PEAK 41(17Q11.2) WILD-TYPE 
                         92.65                         211.17 
  DEL PEAK 41(17Q11.2) MUTATED DEL PEAK 41(17Q11.2) WILD-TYPE 
                         12.00                          14.96 
[1] "0.1 - 92.7 (12.0)"  "0.0 - 211.2 (15.0)"
[1] "hr=" "2"  
D73V2, continuous
D73V3, binary
                                cls
clus                               0   1
  DEL PEAK 41(17Q11.2) MUTATED    70  20
  DEL PEAK 41(17Q11.2) WILD-TYPE 500 452
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 41(17Q11.2) MUTATED     70   20
  DEL PEAK 41(17Q11.2) WILD-TYPE  500  452
                        clus
vv                       DEL PEAK 41(17Q11.2) MUTATED
  BRAIN                                            70
  CENTRAL NERVOUS SYSTEM                           20
                        clus
vv                       DEL PEAK 41(17Q11.2) WILD-TYPE
  BRAIN                                             500
  CENTRAL NERVOUS SYSTEM                            452
[1] 2 2
[1] FALSE
D73V4, binary
                                cls
clus                               0   1
  DEL PEAK 41(17Q11.2) MUTATED    36  54
  DEL PEAK 41(17Q11.2) WILD-TYPE 394 558
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 41(17Q11.2) MUTATED     36   54
  DEL PEAK 41(17Q11.2) WILD-TYPE  394  558
        clus
vv       DEL PEAK 41(17Q11.2) MUTATED DEL PEAK 41(17Q11.2) WILD-TYPE
  FEMALE                           36                            394
  MALE                             54                            558
[1] 2 2
[1] FALSE
D73V5, continuous
                                vv
clus                             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  DEL PEAK 41(17Q11.2) MUTATED            11                             3
  DEL PEAK 41(17Q11.2) WILD-TYPE         165                            24
                                vv
clus                             OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  DEL PEAK 41(17Q11.2) MUTATED                  3                 6
  DEL PEAK 41(17Q11.2) WILD-TYPE              115               172
                                vv
clus                             TREATED PRIMARY GBM
  DEL PEAK 41(17Q11.2) MUTATED                     2
  DEL PEAK 41(17Q11.2) WILD-TYPE                  16
                                vv
clus                             UNTREATED PRIMARY (DE NOVO) GBM
  DEL PEAK 41(17Q11.2) MUTATED                                65
  DEL PEAK 41(17Q11.2) WILD-TYPE                             460
D73V6, multiclass
                                 clus
vv                                DEL PEAK 41(17Q11.2) MUTATED
  ASTROCYTOMA                                               11
  GLIOBLASTOMA MULTIFORME (GBM)                              3
  OLIGOASTROCYTOMA                                           3
  OLIGODENDROGLIOMA                                          6
  TREATED PRIMARY GBM                                        2
  UNTREATED PRIMARY (DE NOVO) GBM                           65
                                 clus
vv                                DEL PEAK 41(17Q11.2) WILD-TYPE
  ASTROCYTOMA                                                165
  GLIOBLASTOMA MULTIFORME (GBM)                               24
  OLIGOASTROCYTOMA                                           115
  OLIGODENDROGLIOMA                                          172
  TREATED PRIMARY GBM                                         16
  UNTREATED PRIMARY (DE NOVO) GBM                            460
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D73V7, binary
                                cls
clus                               0   1
  DEL PEAK 41(17Q11.2) MUTATED    43  47
  DEL PEAK 41(17Q11.2) WILD-TYPE 431 521
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 41(17Q11.2) MUTATED     43   47
  DEL PEAK 41(17Q11.2) WILD-TYPE  431  521
     clus
vv    DEL PEAK 41(17Q11.2) MUTATED DEL PEAK 41(17Q11.2) WILD-TYPE
  NO                            43                            431
  YES                           47                            521
[1] 2 2
[1] FALSE
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 41(17Q11.2) MUTATED                                  1     2
  DEL PEAK 41(17Q11.2) WILD-TYPE                                0    19
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 41(17Q11.2) MUTATED                           8    77
  DEL PEAK 41(17Q11.2) WILD-TYPE                        56   845
D73V8, multiclass
                                  clus
vv                                 DEL PEAK 41(17Q11.2) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            1
  ASIAN                                                       2
  BLACK OR AFRICAN AMERICAN                                   8
  WHITE                                                      77
                                  clus
vv                                 DEL PEAK 41(17Q11.2) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              0
  ASIAN                                                        19
  BLACK OR AFRICAN AMERICAN                                    56
  WHITE                                                       845
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D73V9, binary
                                cls
clus                               0   1
  DEL PEAK 41(17Q11.2) MUTATED     4  74
  DEL PEAK 41(17Q11.2) WILD-TYPE  26 817
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 41(17Q11.2) MUTATED      4   74
  DEL PEAK 41(17Q11.2) WILD-TYPE   26  817
                        clus
vv                       DEL PEAK 41(17Q11.2) MUTATED
  HISPANIC OR LATINO                                4
  NOT HISPANIC OR LATINO                           74
                        clus
vv                       DEL PEAK 41(17Q11.2) WILD-TYPE
  HISPANIC OR LATINO                                 26
  NOT HISPANIC OR LATINO                            817
[1] 2 2
[1] FALSE

Clustering(74) Variable = DEL PEAK 42(18Q23) MUTATION ANALYSIS
D74V1, survival
                              sevent
clus2                            0   1
  DEL PEAK 42(18Q23) MUTATED    73  73
  DEL PEAK 42(18Q23) WILD-TYPE 407 486
  DEL PEAK 42(18Q23) MUTATED DEL PEAK 42(18Q23) WILD-TYPE 
                         146                          893 
  DEL PEAK 42(18Q23) MUTATED DEL PEAK 42(18Q23) WILD-TYPE 
                          73                          486 
$`DEL PEAK 42(18Q23) MUTATED`
TCGA-02-0006 TCGA-02-0011 TCGA-02-0024 TCGA-02-0025 TCGA-02-0039 TCGA-02-0075 
       18.35        20.71        53.10        42.74        10.52        20.84 
TCGA-02-0079 TCGA-02-0106 TCGA-02-0111 TCGA-02-0113 TCGA-02-0324 TCGA-06-0129 
       27.25        11.67        23.18        92.65         7.73        33.67 
TCGA-06-0151 TCGA-06-0173 TCGA-06-0206 TCGA-06-0213 TCGA-06-0237 TCGA-06-0648 
       46.59         4.47         7.66         0.53        13.64         9.80 
TCGA-06-0649 TCGA-06-0749 TCGA-06-1086 TCGA-06-1800 TCGA-06-1806 TCGA-06-2559 
        2.10         2.70         6.84        26.79        15.32         4.93 
TCGA-06-5413 TCGA-06-5859 TCGA-06-6694 TCGA-06-A5U0 TCGA-06-A5U1 TCGA-08-0245 
        8.81         4.57         7.36         4.70         1.87        37.84 
TCGA-08-0359 TCGA-08-0510 TCGA-08-0518 TCGA-08-0525 TCGA-12-0691 TCGA-12-0776 
        3.39         4.27        19.33        15.98        12.13         9.73 
TCGA-12-0826 TCGA-12-1096 TCGA-12-1098 TCGA-12-5301 TCGA-14-0812 TCGA-14-0817 
       27.78         9.11         3.98         2.04         3.25         5.39 
TCGA-14-0865 TCGA-16-0846 TCGA-16-0849 TCGA-19-0962 TCGA-19-1388 TCGA-19-1390 
       16.50         3.91        26.07         0.66        12.95        25.38 
TCGA-19-2619 TCGA-19-4065 TCGA-19-5960 TCGA-26-1438 TCGA-26-1439 TCGA-26-5133 
        9.67         7.04        14.96        10.03        13.87        14.86 
TCGA-26-5136 TCGA-26-6173 TCGA-27-1834 TCGA-27-1838 TCGA-28-1750 TCGA-28-2514 
       18.97         7.92        40.54        11.51         8.35         5.26 
TCGA-28-5207 TCGA-28-5213 TCGA-28-5216 TCGA-32-1973 TCGA-32-1976 TCGA-32-1987 
       11.28        31.27        13.64        21.07         0.49        14.86 
TCGA-32-2491 TCGA-32-2634 TCGA-32-4210 TCGA-41-3392 TCGA-4W-AA9S TCGA-74-6575 
       12.23        22.78         3.72         0.99         4.14        20.91 
TCGA-76-4929 TCGA-76-4934 TCGA-76-6285 TCGA-76-6286 TCGA-81-5911 TCGA-CS-5396 
        3.65         2.53         8.35        20.98        17.72         9.96 
TCGA-CS-6665 TCGA-DB-5275 TCGA-DB-5279 TCGA-DB-A4XD TCGA-DB-A4XG TCGA-DB-A4XH 
       12.43        47.93        44.52        39.78        72.95        31.63 
TCGA-DB-A64L TCGA-DH-5140 TCGA-DH-5142 TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A7UT 
       24.20        19.96        30.31        30.21        42.05        13.38 
TCGA-DU-5849 TCGA-DU-5854 TCGA-DU-5870 TCGA-DU-6393 TCGA-DU-6407 TCGA-DU-7009 
       14.56         8.45       182.33        52.11        94.52       138.28 
TCGA-DU-7012 TCGA-DU-7014 TCGA-DU-7300 TCGA-DU-8158 TCGA-DU-A5TT TCGA-DU-A7T6 
        6.54       117.40        62.01         5.10         4.96        17.98 
TCGA-E1-5307 TCGA-FG-8188 TCGA-HT-7476 TCGA-HT-7480 TCGA-HT-7606 TCGA-HT-7616 
       57.93        14.96         6.54        75.19        17.29         0.23 
TCGA-HT-7688 TCGA-HT-7692 TCGA-HT-7857 TCGA-HT-8111 TCGA-HT-8114 TCGA-HT-8564 
       31.69         2.96         0.23         0.23        34.19        15.72 
TCGA-HT-A5RB TCGA-HT-A617 TCGA-HT-A74L TCGA-HW-7489 TCGA-HW-7491 TCGA-HW-8320 
        0.10        16.14        11.05         8.32        40.18        21.60 
TCGA-HW-A5KJ TCGA-P5-A5EX TCGA-P5-A72U TCGA-P5-A72Z TCGA-QH-A65R TCGA-QH-A65Z 
       20.35         1.64         0.16        11.64        15.16        14.04 
TCGA-RY-A840 TCGA-S9-A6TS TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6WD TCGA-S9-A6WH 
       28.08        62.17        37.84        34.49        69.50        32.45 
TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WP TCGA-S9-A7QY TCGA-S9-A7R2 
       31.10        19.86        15.91        15.16        28.37        10.39 
TCGA-TM-A7C4 TCGA-TM-A84G TCGA-TM-A84I TCGA-TM-A84J TCGA-TQ-A7RH TCGA-TQ-A7RW 
       48.33        40.64        28.08        24.16        15.98        26.99 
TCGA-VM-A8CA TCGA-WH-A86K 
       13.51        13.32 

$`DEL PEAK 42(18Q23) WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 TCGA-02-0014 
       11.77         4.73        23.18        10.59        35.41        82.59 
TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0026 TCGA-02-0027 
       20.61        87.06        77.65        20.12        24.59        12.16 
TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0043 
       90.58         2.83        14.14         3.62        10.72        18.31 
TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 
        6.87        14.73         3.22        15.09        12.59         6.54 
TCGA-02-0055 TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 
        2.50        19.86         8.35         9.57         6.02        19.73 
TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0080 
       26.43        28.70        25.05         5.49        10.19        89.72 
TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 
       22.72        12.62        51.32         8.81        57.76        16.96 
TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0107 TCGA-02-0114 TCGA-02-0115 
        3.48        27.02        65.00        17.65        99.98        15.65 
TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 
       48.95        16.54        16.93        17.72        10.75        14.47 
TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 
        3.98        13.87        14.20        15.95        12.23         9.90 
TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 
       10.62         7.33        15.91        25.71         4.37        25.12 
TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 
       10.59        12.39        14.50        10.55        47.11        11.34 
TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 
        9.27        16.21         3.35        16.80        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 
       15.45        20.32         2.70         6.15        20.38        47.61 
TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 
        6.94         3.98        22.72        12.95        25.35        14.30 
TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 
       26.70        24.23        11.90         0.20        10.29         2.20 
TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 
       11.74         2.33        20.09        17.79        10.09         8.61 
TCGA-06-0150 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 
       19.46        12.33        13.94        10.45         3.19        10.82 
TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 
        9.44        11.80         3.42        56.91        10.65         5.85 
TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 
       19.66         3.29        13.12         3.22         4.04        91.00 
TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 
        4.18        88.14        20.25         3.65        69.90        73.84 
TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 
       27.22        44.58        15.42        10.42        38.96         4.67 
TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 
        7.40         5.56         0.39         8.42         7.63         7.40 
TCGA-06-0211 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 TCGA-06-0238 
       11.84        15.02        24.16         0.72        19.82        13.32 
TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 
       20.42        48.69        10.82         9.01         0.26        72.36 
TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 
        4.70         9.57         3.16        35.11        12.62         5.75 
TCGA-06-0646 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 
        5.75        23.57        14.20        26.40        46.88         7.86 
TCGA-06-0747 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 
        2.70         0.92        43.46        46.19         5.65         7.17 
TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1087 
       40.41        16.57        20.78        26.76        23.93         4.04 
TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 
       11.84        15.32        13.61        33.90         1.08        12.49 
TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 
       17.65        12.56        30.64         5.95        16.64         5.98 
TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 
        4.37         0.43        31.50        11.74         3.55         8.35 
TCGA-06-5412 TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 
        4.54         8.98         8.55         6.71         2.73         3.75 
TCGA-06-5858 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        6.15         5.23         7.79         5.39         1.48       120.56 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
        8.32        12.85         4.77         1.55         4.77         4.96 
TCGA-06-A6S0 TCGA-06-A6S1 TCGA-06-A7TK TCGA-06-A7TL TCGA-08-0244 TCGA-08-0246 
        3.12         2.56         5.39         5.42        22.68         4.18 
TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 
      115.86         1.74         8.42        25.71        12.16         9.80 
TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 
       29.23        65.33         1.28         8.42        17.95        24.56 
TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 
       31.10        37.58        22.29        12.23        14.93        18.02 
TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0512 TCGA-08-0514 
       15.35        13.97         0.72        12.56        42.15        11.08 
TCGA-08-0516 TCGA-08-0517 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0529 
       19.59        58.68        10.75         4.80         7.27        18.41 
TCGA-08-0531 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 
        7.56        15.35        14.73        12.99        34.92        10.45 
TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 
        7.59        94.78         0.10        38.17        25.97        26.66 
TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 
        3.65        20.38        28.41        15.06        53.85        43.23 
TCGA-12-0775 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 
        7.63        14.93        14.86        91.76        24.79        18.48 
TCGA-12-0821 TCGA-12-0822 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 
       10.62        23.51        38.76         8.94        20.58       127.59 
TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 
        5.82         7.59        33.21        21.73        15.98        12.23 
TCGA-12-1095 TCGA-12-1097 TCGA-12-1099 TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 
       15.85        14.53         4.14        15.65        25.68        14.73 
TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 
        6.77        59.77        44.02        26.93        15.22        10.95 
TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-14-0736 
       12.69        34.92        14.53        14.93         3.22        15.12 
TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 
       11.97         0.95         6.21        23.05         2.24        11.24 
TCGA-14-0790 TCGA-14-0813 TCGA-14-0862 TCGA-14-0866 TCGA-14-0867 TCGA-14-0871 
       13.78         1.35         2.89        26.33         2.04        28.93 
TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 
       15.95        19.30         0.79         1.38         1.12         3.75 
TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 
       32.05        58.78        23.11         7.10         1.15        30.18 
TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 
        0.92        40.96         6.67        12.43         0.99         1.97 
TCGA-14-1821 TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 
       17.79        17.85         7.63         5.88         7.17        17.49 
TCGA-14-2555 TCGA-14-3477 TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 
        7.96         3.78         3.42        13.78        50.53        19.10 
TCGA-15-1447 TCGA-15-1449 TCGA-16-0848 TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 
       53.19        13.28        17.59        16.37         4.31        29.03 
TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 
        4.57        10.29        14.01         9.14        21.24        13.97 
TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 TCGA-19-0963 TCGA-19-0964 
        6.41        11.77        21.90         8.61        14.27         3.39 
TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1389 TCGA-19-1392 TCGA-19-1786 
       10.75         9.07         5.95         4.64         3.65         7.17 
TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 
       12.66         3.25         0.13         4.87         1.08         7.53 
TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-5947 TCGA-19-5950 
        0.16         4.08        24.23         7.00         6.64        17.19 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 
        8.02        18.90         4.73        12.10         1.78        22.49 
TCGA-19-5958 TCGA-19-5959 TCGA-19-A60I TCGA-19-A6J4 TCGA-19-A6J5 TCGA-26-1440 
       14.07        16.80        17.79         3.98        28.54         9.73 
TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5134 TCGA-26-5135 
       31.33         7.13         9.37         9.40         5.49         8.88 
TCGA-26-5139 TCGA-26-6174 TCGA-26-A7UX TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 
        1.58         2.33        19.33         5.06        16.60         9.86 
TCGA-27-1833 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-2518 TCGA-27-2519 
       24.23        21.30        30.05        14.04        24.76        10.39 
TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 
       10.39        16.08         7.59         2.86        14.40        15.78 
TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 
        0.20         2.53         9.21         7.63         8.48         1.22 
TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 
        1.55         2.83         0.13         0.66         6.74         4.77 
TCGA-28-2513 TCGA-28-5204 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5214 
        7.30        14.93        17.88        14.53        11.77        23.44 
TCGA-28-5215 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 
       11.01         5.16        22.68        12.76         5.42        15.39 
TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 
        0.10        15.85        19.50         1.18         4.67        12.69 
TCGA-32-1991 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2616 TCGA-32-2632 
       16.93        20.78        15.02        15.95         7.36         8.84 
TCGA-32-2638 TCGA-32-4208 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 
       25.18        21.14        12.59        19.86        10.85        19.23 
TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3393 TCGA-41-3915 
        0.85        13.35         8.94         9.53         4.44        11.84 
TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-4W-AA9T TCGA-74-6573 TCGA-74-6577 
        0.20        15.12        12.46        14.76         3.45         4.34 
TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 
       14.33         8.22         7.50         4.80         4.54         3.09 
TCGA-76-4931 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 
        9.17        10.78        16.70         3.29         2.70        11.38 
TCGA-76-6282 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 
       17.06         4.83         5.03         0.23         9.27         7.73 
TCGA-76-6664 TCGA-81-5910 TCGA-87-5896 TCGA-OX-A56R TCGA-RR-A6KA TCGA-RR-A6KC 
        7.79         1.61        26.30         5.92         6.28        20.55 
TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 
        4.70         7.69        43.89        18.15        10.62        64.64 
TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 
       40.18         0.10        21.01         6.38        17.69        23.84 
TCGA-CS-6290 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 
       17.95         8.48         7.56         8.02         7.40         6.61 
TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 
      122.73        81.96        75.25        72.92        50.86        50.17 
TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC 
       36.56        78.28        46.42        18.84        30.21        46.72 
TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R 
       37.45        33.57        25.48        30.12         5.98        31.40 
TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K 
       27.45        27.81        29.23        14.40        18.51        12.10 
TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5141 TCGA-DH-5143 
       11.24        17.88        30.74        16.18        31.82        14.40 
TCGA-DH-5144 TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US 
        8.02        27.81        17.19        17.19        54.25        13.12 
TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 
        3.45        18.61        18.02        17.46         6.74        13.38 
TCGA-DU-5855 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6394 
        6.81        18.94        17.49        15.16       211.17        22.42 
TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 
       49.02        75.16        46.06        65.75         1.22        87.45 
TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6408 
        7.04        11.64       133.74        19.89        16.83       114.08 
TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7010 
        7.96         7.73        11.47        62.96       156.23        14.99 
TCGA-DU-7011 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 
      105.21         8.84        90.77        30.67        26.30        10.36 
TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7301 TCGA-DU-7302 
        7.96        94.32        18.94        44.02        25.91        60.30 
TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 
       23.31        41.98         2.76        23.74        14.60        20.68 
TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP 
       21.40        19.13        16.96        15.48        14.17        14.24 
TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 
       12.59        15.12         3.65         5.65        12.20         8.65 
TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L 
        2.70        77.98         7.23         5.98        11.41        26.76 
TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC 
        7.13        21.30       124.50        77.88        42.31        23.51 
TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 
        7.50        44.42         0.56        50.14        67.46        41.13 
TCGA-E1-5305 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YO 
       79.99       134.27        78.21        95.57       130.78        75.02 
TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 
       32.45        36.82        32.35        14.33         0.23         0.20 
TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 
       47.77        25.48        34.36        36.82        18.77        14.93 
TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7638 
       24.99        23.97        18.44        15.35        17.88        22.55 
TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 
       20.61        20.09        12.95        13.68        14.24        16.01 
TCGA-FG-8187 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW 
       20.09        22.52        32.61        38.27        10.72        18.38 
TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ 
       18.71        23.70        14.76        17.82        16.41        15.02 
TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 
       16.44        22.26        28.54        10.78        36.66        48.69 
TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 
       20.45        13.58         5.72        27.52         0.10         6.67 
TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 
       11.54        40.11         0.13         0.03        16.54         3.75 
TCGA-HT-7475 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7481 TCGA-HT-7482 
       17.42        24.26         6.38        40.34        95.93       106.95 
TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 
      172.77         4.01         5.03        29.85        23.18       122.47 
TCGA-HT-7605 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 
        4.57         3.16        22.06        45.99        56.09        57.60 
TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 
       14.27         0.16        16.24         0.76        44.68         6.05 
TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7693 
       42.74         0.10        14.96         0.10         0.10        17.52 
TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7858 
        6.90        14.53        39.48        19.23        39.09        50.63 
TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 
        0.49        23.61        37.15         0.33         0.13         3.68 
TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 
        5.33        35.47         3.72        11.28        31.43         1.64 
TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 
       16.24         9.40        63.55         0.10        37.87        33.01 
TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 
       12.23         6.25         0.10         0.46         2.50         5.56 
TCGA-HT-8110 TCGA-HT-8113 TCGA-HT-8563 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 
       13.78        29.59        28.27         0.23        26.04         0.13 
TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 
       20.22         0.07        27.35         5.33         2.70        16.93 
TCGA-HT-A616 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H 
        1.81        16.83        21.40        17.52        17.65         2.43 
TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7490 
       10.52        15.35         0.10        29.92        19.89        19.23 
TCGA-HW-7493 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KK 
       35.90         4.31        21.70        19.59        17.82        12.76 
TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 
       20.81        20.71        19.00        42.77        14.40        14.40 
TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 
        0.23         6.71         2.37         2.30         4.11         5.88 
TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A730 
        7.63         0.76         1.28        10.42        13.25         0.20 
TCGA-P5-A731 TCGA-P5-A733 TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A6CS 
        9.01        13.61         2.53        12.62        15.85        19.33 
TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ 
       14.83        14.53        13.61        12.23         2.20         9.17 
TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA 
       10.29        14.53        16.34        16.73         1.91        16.50 
TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO 
        5.03        11.08        12.99        88.83        94.03        32.65 
TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A843 TCGA-RY-A845 
       59.38        30.87         5.46         9.90         2.07        19.59 
TCGA-RY-A847 TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 
       30.67        87.12        18.77        31.33        28.70        22.95 
TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 
       17.62        23.64        32.61        16.08        98.24        95.93 
TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WI TCGA-S9-A6WO 
        5.85       106.39        72.59        80.12        84.99        18.61 
TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ 
       14.07        36.13         7.92        22.32        23.51         7.13 
TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX 
       20.02         8.19         2.04        17.03        15.06        13.12 
TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 
       13.02       169.84        99.06        30.05        98.63        31.59 
TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF 
       18.71        11.97        49.45        49.32        34.78        48.39 
TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84H TCGA-TM-A84L TCGA-TM-A84M 
       24.92        16.18        59.05        30.44        40.83        24.79 
TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-VM-A8C8 
       33.24        25.38        18.61        14.93        23.80        43.04 
TCGA-VM-A8C9 TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CH TCGA-VV-A829 
       30.08         0.10         7.89        35.93        23.47        37.05 
TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WY-A858 TCGA-WY-A859 
       16.01        23.21         8.05        51.06        43.96        39.88 
TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       43.40        45.80        46.88        37.71        20.81 

  DEL PEAK 42(18Q23) MUTATED DEL PEAK 42(18Q23) WILD-TYPE 
                        0.10                         0.03 
  DEL PEAK 42(18Q23) MUTATED DEL PEAK 42(18Q23) WILD-TYPE 
                      182.33                       211.17 
  DEL PEAK 42(18Q23) MUTATED DEL PEAK 42(18Q23) WILD-TYPE 
                       14.96                        14.73 
[1] "0.1 - 182.3 (15.0)" "0.0 - 211.2 (14.7)"
[1] "hr=" "1.1"
D74V2, continuous
D74V3, binary
                              cls
clus                             0   1
  DEL PEAK 42(18Q23) MUTATED    77  69
  DEL PEAK 42(18Q23) WILD-TYPE 493 403
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 42(18Q23) MUTATED     77   69
  DEL PEAK 42(18Q23) WILD-TYPE  493  403
                        clus
vv                       DEL PEAK 42(18Q23) MUTATED
  BRAIN                                          77
  CENTRAL NERVOUS SYSTEM                         69
                        clus
vv                       DEL PEAK 42(18Q23) WILD-TYPE
  BRAIN                                           493
  CENTRAL NERVOUS SYSTEM                          403
[1] 2 2
[1] FALSE
D74V4, binary
                              cls
clus                             0   1
  DEL PEAK 42(18Q23) MUTATED    57  89
  DEL PEAK 42(18Q23) WILD-TYPE 373 523
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 42(18Q23) MUTATED     57   89
  DEL PEAK 42(18Q23) WILD-TYPE  373  523
        clus
vv       DEL PEAK 42(18Q23) MUTATED DEL PEAK 42(18Q23) WILD-TYPE
  FEMALE                         57                          373
  MALE                           89                          523
[1] 2 2
[1] FALSE
D74V5, continuous
                              vv
clus                           ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  DEL PEAK 42(18Q23) MUTATED            23                             5
  DEL PEAK 42(18Q23) WILD-TYPE         153                            22
                              vv
clus                           OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  DEL PEAK 42(18Q23) MUTATED                 13                33
  DEL PEAK 42(18Q23) WILD-TYPE              105               145
                              vv
clus                           TREATED PRIMARY GBM
  DEL PEAK 42(18Q23) MUTATED                     2
  DEL PEAK 42(18Q23) WILD-TYPE                  16
                              vv
clus                           UNTREATED PRIMARY (DE NOVO) GBM
  DEL PEAK 42(18Q23) MUTATED                                70
  DEL PEAK 42(18Q23) WILD-TYPE                             455
D74V6, multiclass
                                 clus
vv                                DEL PEAK 42(18Q23) MUTATED
  ASTROCYTOMA                                             23
  GLIOBLASTOMA MULTIFORME (GBM)                            5
  OLIGOASTROCYTOMA                                        13
  OLIGODENDROGLIOMA                                       33
  TREATED PRIMARY GBM                                      2
  UNTREATED PRIMARY (DE NOVO) GBM                         70
                                 clus
vv                                DEL PEAK 42(18Q23) WILD-TYPE
  ASTROCYTOMA                                              153
  GLIOBLASTOMA MULTIFORME (GBM)                             22
  OLIGOASTROCYTOMA                                         105
  OLIGODENDROGLIOMA                                        145
  TREATED PRIMARY GBM                                       16
  UNTREATED PRIMARY (DE NOVO) GBM                          455
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D74V7, binary
                              cls
clus                             0   1
  DEL PEAK 42(18Q23) MUTATED    60  86
  DEL PEAK 42(18Q23) WILD-TYPE 414 482
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 42(18Q23) MUTATED     60   86
  DEL PEAK 42(18Q23) WILD-TYPE  414  482
     clus
vv    DEL PEAK 42(18Q23) MUTATED DEL PEAK 42(18Q23) WILD-TYPE
  NO                          60                          414
  YES                         86                          482
[1] 2 2
[1] FALSE
                              vv
clus                           AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 42(18Q23) MUTATED                                  1     3
  DEL PEAK 42(18Q23) WILD-TYPE                                0    18
                              vv
clus                           BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 42(18Q23) MUTATED                           9   126
  DEL PEAK 42(18Q23) WILD-TYPE                        55   796
D74V8, multiclass
                                  clus
vv                                 DEL PEAK 42(18Q23) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                          1
  ASIAN                                                     3
  BLACK OR AFRICAN AMERICAN                                 9
  WHITE                                                   126
                                  clus
vv                                 DEL PEAK 42(18Q23) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                            0
  ASIAN                                                      18
  BLACK OR AFRICAN AMERICAN                                  55
  WHITE                                                     796
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D74V9, binary
                              cls
clus                             0   1
  DEL PEAK 42(18Q23) MUTATED     8 122
  DEL PEAK 42(18Q23) WILD-TYPE  22 769
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 42(18Q23) MUTATED      8  122
  DEL PEAK 42(18Q23) WILD-TYPE   22  769
                        clus
vv                       DEL PEAK 42(18Q23) MUTATED
  HISPANIC OR LATINO                              8
  NOT HISPANIC OR LATINO                        122
                        clus
vv                       DEL PEAK 42(18Q23) WILD-TYPE
  HISPANIC OR LATINO                               22
  NOT HISPANIC OR LATINO                          769
[1] 2 2
[1] FALSE

Clustering(75) Variable = DEL PEAK 43(19Q13.41) MUTATION ANALYSIS
D75V1, survival
                                 sevent
clus2                               0   1
  DEL PEAK 43(19Q13.41) MUTATED   223 121
  DEL PEAK 43(19Q13.41) WILD-TYPE 257 438
  DEL PEAK 43(19Q13.41) MUTATED DEL PEAK 43(19Q13.41) WILD-TYPE 
                            344                             695 
  DEL PEAK 43(19Q13.41) MUTATED DEL PEAK 43(19Q13.41) WILD-TYPE 
                            121                             438 
$`DEL PEAK 43(19Q13.41) MUTATED`
TCGA-02-0026 TCGA-02-0028 TCGA-02-0034 TCGA-02-0055 TCGA-02-0058 TCGA-02-0059 
       24.59        90.58        14.14         2.50         8.35         9.57 
TCGA-02-0060 TCGA-02-0079 TCGA-02-0104 TCGA-02-0106 TCGA-02-0114 TCGA-02-0258 
        6.02        27.25        65.00        11.67        99.98        16.54 
TCGA-02-0260 TCGA-02-0281 TCGA-02-0321 TCGA-02-0325 TCGA-02-0432 TCGA-02-0456 
       16.93         3.98         9.90        10.62        47.11         3.35 
TCGA-02-2466 TCGA-06-0132 TCGA-06-0149 TCGA-06-0152 TCGA-06-0237 TCGA-06-0394 
       16.80        25.35         8.61        12.33        13.64        10.82 
TCGA-06-0745 TCGA-06-0875 TCGA-06-0878 TCGA-06-1084 TCGA-06-2561 TCGA-06-2562 
        7.86        43.46         7.17        23.93        17.65        12.56 
TCGA-06-2563 TCGA-06-2569 TCGA-06-5411 TCGA-06-5415 TCGA-06-6693 TCGA-06-A5U0 
       30.64         0.43         8.35         8.55       120.56         4.70 
TCGA-06-A6S1 TCGA-08-0244 TCGA-08-0245 TCGA-08-0344 TCGA-08-0346 TCGA-08-0348 
        2.56        22.68        37.84       115.86         8.42        12.16 
TCGA-08-0349 TCGA-08-0351 TCGA-08-0358 TCGA-08-0386 TCGA-08-0392 TCGA-08-0517 
        9.80        65.33        22.29        18.02         0.72        58.68 
TCGA-12-0619 TCGA-12-0656 TCGA-12-0827 TCGA-12-1088 TCGA-12-1094 TCGA-12-1095 
       34.92        94.78        38.76       127.59        12.23        15.85 
TCGA-12-1097 TCGA-12-1099 TCGA-12-1598 TCGA-12-3651 TCGA-14-0740 TCGA-14-0783 
       14.53         4.14        15.65        12.69        11.97         6.21 
TCGA-14-0862 TCGA-14-0865 TCGA-14-1451 TCGA-14-1458 TCGA-14-4157 TCGA-15-1444 
        2.89        16.50        23.11         6.67         3.42        50.53 
TCGA-16-0850 TCGA-16-0861 TCGA-16-1460 TCGA-19-0960 TCGA-19-1388 TCGA-19-1390 
       16.37         4.31         6.41         8.61        12.95        25.38 
TCGA-19-2621 TCGA-19-2629 TCGA-26-5136 TCGA-27-1834 TCGA-27-2519 TCGA-27-2521 
        1.08        24.23        18.97        40.54        10.39        10.39 
TCGA-28-1746 TCGA-28-2514 TCGA-28-5211 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 
        0.20         5.26        11.77        15.39        21.07         0.49 
TCGA-32-1978 TCGA-32-1987 TCGA-32-2491 TCGA-32-4208 TCGA-32-4210 TCGA-41-2575 
       15.85        14.86        12.23        21.14         3.72         9.53 
TCGA-41-5651 TCGA-76-4925 TCGA-76-4929 TCGA-76-4931 TCGA-76-6193 TCGA-76-6285 
       15.12         4.80         3.65         9.17         2.70         8.35 
TCGA-76-6662 TCGA-76-6664 TCGA-87-5896 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 
        9.27         7.79        26.30        43.89        18.15        10.62 
TCGA-CS-5390 TCGA-CS-5394 TCGA-CS-5396 TCGA-CS-6668 TCGA-CS-6670 TCGA-DB-5270 
       64.64         0.10         9.96         8.02         6.61       122.73 
TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-A4XA 
       75.25        47.93        50.86        50.17        44.52        18.84 
TCGA-DB-A4XB TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64P TCGA-DB-A64Q 
       30.21        72.95        31.63        24.20        30.12         5.98 
TCGA-DB-A64R TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A75K TCGA-DB-A75L 
       31.40        27.81        29.23        14.40        12.10        11.24 
TCGA-DB-A75O TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5144 TCGA-DH-A669 
       30.74        19.96        31.82        30.31         8.02        30.21 
TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US 
       42.05        27.81        17.19        17.19        54.25        13.12 
TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5872 TCGA-DU-5874 
       14.56        17.46         6.81       182.33        17.49        15.16 
TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 
       52.11        22.42        75.16        46.06        65.75         1.22 
TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7007 TCGA-DU-7009 TCGA-DU-7010 
      114.08         7.96         7.73        62.96       138.28        14.99 
TCGA-DU-7014 TCGA-DU-7018 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7300 
      117.40        30.67         7.96        94.32        18.94        62.01 
TCGA-DU-7302 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8164 TCGA-DU-8166 TCGA-DU-8168 
       60.30        41.98         2.76        21.40        16.96        14.17 
TCGA-DU-A5TP TCGA-DU-A5TS TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S8 
       14.24        15.12         8.65         2.70        77.98         5.98 
TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC 
       21.30        17.98       124.50        77.88        42.31        23.51 
TCGA-DU-A7TG TCGA-E1-5302 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5311 TCGA-E1-5318 
       44.42        50.14        41.13        79.99       134.27        78.21 
TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YO TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-FG-5962 
       95.57       130.78        75.02        14.33         0.23        47.77 
TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6690 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7638 
       34.36        36.82        24.99        15.35        17.88        22.55 
TCGA-FG-7641 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-A4MT TCGA-FG-A4MX 
       20.61        16.01        20.09        14.96        38.27        18.71 
TCGA-FG-A60K TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A710 TCGA-FG-A711 
       17.82        15.02        16.44        22.26        36.66        48.69 
TCGA-FG-A713 TCGA-FG-A87N TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7471 
       20.45        13.58         0.10         6.67        11.54         0.13 
TCGA-HT-7472 TCGA-HT-7475 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7601 TCGA-HT-7605 
        0.03        17.42        75.19        95.93         5.03         4.57 
TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7610 TCGA-HT-7616 TCGA-HT-7620 
       17.29         3.16        22.06        56.09         0.23        14.27 
TCGA-HT-7677 TCGA-HT-7681 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7692 
       16.24        44.68         0.10        31.69        14.96         2.96 
TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7874 TCGA-HT-7875 
        6.90        14.53        39.09         0.23        37.15         0.33 
TCGA-HT-7877 TCGA-HT-7881 TCGA-HT-8010 TCGA-HT-8012 TCGA-HT-8105 TCGA-HT-8109 
        0.13        35.47         1.64         9.40         6.25         5.56 
TCGA-HT-8111 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DV TCGA-HT-A5R7 TCGA-HT-A5R9 
        0.23        28.27        15.72        26.04        20.22         0.07 
TCGA-HT-A615 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61B TCGA-HT-A74K TCGA-HT-A74L 
       16.93        16.83        21.40        17.52        15.35        11.05 
TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8322 
        0.10        29.92        19.89        40.18         4.31        17.82 
TCGA-HW-A5KJ TCGA-IK-8125 TCGA-KT-A74X TCGA-P5-A5EV TCGA-P5-A5EX TCGA-P5-A5EZ 
       20.35        42.77        14.40         0.23         1.64         2.30 
TCGA-P5-A5F0 TCGA-P5-A5F2 TCGA-P5-A5F6 TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 
        4.11         7.63         1.28        11.64         0.20         9.01 
TCGA-QH-A65R TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CU TCGA-QH-A6CY 
       15.16        12.62        15.85        14.04        14.83         2.20 
TCGA-QH-A6CZ TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A86X 
        9.17        14.53        16.34        16.73         1.91        11.08 
TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X 
       12.99        88.83        94.03        32.65        59.38        30.87 
TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A847 TCGA-S9-A6TV TCGA-S9-A6TW 
        5.46         9.90        28.08        30.67        18.77        37.84 
TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6UB 
       34.49        31.33        28.70        23.64        32.61       106.39 
TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WN 
       69.50        72.59        32.45        84.99        31.10        15.91 
TCGA-S9-A6WP TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IY TCGA-S9-A7J1 TCGA-S9-A7J2 
       15.16        36.13         7.92        23.51         8.19         2.04 
TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R8 
       17.03        15.06        28.37        13.02       169.84        31.59 
TCGA-S9-A89V TCGA-TM-A7C5 TCGA-TM-A84B TCGA-TM-A84G TCGA-TM-A84J TCGA-TM-A84M 
       18.71        49.32        24.92        40.64        24.16        24.79 
TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TQ-A7RH TCGA-TQ-A7RW 
       33.24        25.38        18.61        14.93        15.98        26.99 
TCGA-VM-A8C8 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CE TCGA-VV-A829 TCGA-VW-A7QS 
       43.04        13.51         0.10        35.93        37.05        23.21 
TCGA-W9-A837 TCGA-WY-A858 
       51.06        43.96 

$`DEL PEAK 43(19Q13.41) WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
       11.77         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 
       20.71        82.59        20.61        87.06        77.65        20.12 
TCGA-02-0024 TCGA-02-0025 TCGA-02-0027 TCGA-02-0033 TCGA-02-0037 TCGA-02-0038 
       53.10        42.74        12.16         2.83         3.62        10.72 
TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 TCGA-02-0051 
       10.52        18.31         6.87        14.73         3.22        15.09 
TCGA-02-0052 TCGA-02-0054 TCGA-02-0057 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 
       12.59         6.54        19.86        19.73        26.43        28.70 
TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0080 TCGA-02-0083 
       25.05         5.49        10.19        20.84        89.72        22.72 
TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 
       12.62        51.32         8.81        57.76        16.96         3.48 
TCGA-02-0102 TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 TCGA-02-0115 TCGA-02-0116 
       27.02        17.65        23.18        92.65        15.65        48.95 
TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 
       17.72        10.75        14.47        13.87        14.20        15.95 
TCGA-02-0317 TCGA-02-0324 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 
       12.23         7.73         7.33        15.91        25.71         4.37 
TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0440 
       25.12        10.59        12.39        14.50        10.55        11.34 
TCGA-02-0446 TCGA-02-0451 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 
        9.27        16.21        12.92        15.32        15.45        20.32 
TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 
        2.70         6.15        20.38        47.61         6.94         3.98 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 
       22.72        33.67        12.95        14.30        26.70        24.23 
TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 
       11.90         0.20        10.29         2.20        11.74         2.33 
TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0150 TCGA-06-0151 TCGA-06-0154 
       20.09        17.79        10.09        19.46        46.59        13.94 
TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 
       10.45         3.19        10.82         9.44        11.80         3.42 
TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 
       56.91        10.65         5.85        19.66         3.29        13.12 
TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 
        4.47         3.22         4.04        91.00         4.18        88.14 
TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 
       20.25         3.65        69.90        73.84        27.22        44.58 
TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 
       15.42        10.42        38.96         4.67         7.40         5.56 
TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 
        0.39         7.66         8.42         7.63         7.40        11.84 
TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 TCGA-06-0238 
        0.53        15.02        24.16         0.72        19.82        13.32 
TCGA-06-0240 TCGA-06-0241 TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 
       20.42        48.69         9.01         0.26        72.36         4.70 
TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
        9.57         3.16        35.11        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0876 TCGA-06-0877 TCGA-06-0879 
        2.70         2.70         0.92        46.19         5.65        40.41 
TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1086 TCGA-06-1087 TCGA-06-1800 
       16.57        20.78        26.76         6.84         4.04        26.79 
TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-1806 TCGA-06-2557 
       11.84        15.32        13.61        33.90        15.32         1.08 
TCGA-06-2558 TCGA-06-2559 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 
       12.49         4.93         5.95        16.64         5.98         4.37 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 
       31.50        11.74         3.55         4.54         8.81         8.98 
TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 
        6.71         2.73         3.75         6.15         4.57         5.23 
TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 
        7.79         5.39         1.48         7.36         8.32        12.85 
TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-06-A5U1 TCGA-06-A6S0 
        4.77         1.55         4.77         4.96         1.87         3.12 
TCGA-06-A7TK TCGA-06-A7TL TCGA-08-0246 TCGA-08-0345 TCGA-08-0347 TCGA-08-0350 
        5.39         5.42         4.18         1.74        25.71        29.23 
TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 
        1.28         8.42        17.95        24.56        31.10        37.58 
TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0389 TCGA-08-0390 TCGA-08-0509 
        3.39        12.23        14.93        15.35        13.97        12.56 
TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 TCGA-08-0518 TCGA-08-0520 
        4.27        42.15        11.08        19.59        19.33        10.75 
TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 
        4.80         7.27        15.98        18.41         7.56        15.35 
TCGA-12-0616 TCGA-12-0618 TCGA-12-0620 TCGA-12-0654 TCGA-12-0657 TCGA-12-0662 
       14.73        12.99        10.45         7.59         0.10        38.17 
TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 
       25.97        26.66        12.13         3.65        20.38        28.41 
TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 
       15.06        53.85        43.23         7.63         9.73        14.93 
TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 
       14.86        91.76        24.79        18.48        10.62        23.51 
TCGA-12-0826 TCGA-12-0828 TCGA-12-0829 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 
       27.78         8.94        20.58         5.82         7.59        33.21 
TCGA-12-1092 TCGA-12-1093 TCGA-12-1096 TCGA-12-1098 TCGA-12-1599 TCGA-12-1600 
       21.73        15.98         9.11         3.98        25.68        14.73 
TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 
        6.77        59.77        44.02        26.93        15.22        10.95 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 
       34.92        14.53        14.93         3.22         2.04        15.12 
TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 
        0.95        23.05         2.24        11.24        13.78         3.25 
TCGA-14-0813 TCGA-14-0817 TCGA-14-0866 TCGA-14-0867 TCGA-14-0871 TCGA-14-1034 
        1.35         5.39        26.33         2.04        28.93        15.95 
TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 
       19.30         0.79         1.38         1.12         3.75        32.05 
TCGA-14-1450 TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 
       58.78         7.10         1.15        30.18         0.92        40.96 
TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 TCGA-14-1823 TCGA-14-1825 
       12.43         0.99         1.97        17.79        17.85         7.63 
TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-3477 TCGA-15-0742 
        5.88         7.17        17.49         7.96         3.78        13.78 
TCGA-15-1446 TCGA-15-1447 TCGA-15-1449 TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 
       19.10        53.19        13.28         3.91        17.59        26.07 
TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 
       29.03         4.57        10.29        14.01         9.14        21.24 
TCGA-16-1063 TCGA-19-0955 TCGA-19-0957 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 
       13.97        11.77        21.90         0.66        14.27         3.39 
TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1389 TCGA-19-1392 TCGA-19-1786 
       10.75         9.07         5.95         4.64         3.65         7.17 
TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 
       12.66         3.25         0.13         9.67         4.87         7.53 
TCGA-19-2624 TCGA-19-2625 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 
        0.16         4.08         7.00         7.04         6.64        17.19 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 
        8.02        18.90         4.73        12.10         1.78        22.49 
TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-19-A60I TCGA-19-A6J4 TCGA-19-A6J5 
       14.07        16.80        14.96        17.79         3.98        28.54 
TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 
       10.03        13.87         9.73        31.33         7.13         9.37 
TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5139 TCGA-26-6173 
        9.40        14.86         5.49         8.88         1.58         7.92 
TCGA-26-6174 TCGA-26-A7UX TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 
        2.33        19.33         5.06        16.60         9.86        24.23 
TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2523 
       21.30        30.05        14.04        11.51        24.76        16.08 
TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1749 
        7.59         2.86        14.40        15.78         2.53         9.21 
TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 
        8.35         7.63         8.48         1.22         1.55         2.83 
TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 TCGA-28-2513 TCGA-28-5204 
        0.13         0.66         6.74         4.77         7.30        14.93 
TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 
       11.28        17.88        14.53        31.27        23.44        11.01 
TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1977 
       13.64         5.16        22.68        12.76         5.42         0.10 
TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 TCGA-32-2494 
       19.50         1.18         4.67        12.69        16.93        20.78 
TCGA-32-2495 TCGA-32-2615 TCGA-32-2616 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 
       15.02        15.95         7.36         8.84        22.78        25.18 
TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 
       12.59        19.86        10.85        19.23         0.85        13.35 
TCGA-41-2573 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-6646 
        8.94         0.99         4.44        11.84         0.20        12.46 
TCGA-4W-AA9S TCGA-4W-AA9T TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 
        4.14        14.76         3.45        20.91         4.34        14.33 
TCGA-74-6581 TCGA-74-6584 TCGA-76-4926 TCGA-76-4928 TCGA-76-4934 TCGA-76-4935 
        8.22         7.50         4.54         3.09         2.53        10.78 
TCGA-76-6191 TCGA-76-6192 TCGA-76-6280 TCGA-76-6282 TCGA-76-6286 TCGA-76-6656 
       16.70         3.29        11.38        17.06        20.98         4.83 
TCGA-76-6657 TCGA-76-6661 TCGA-76-6663 TCGA-81-5910 TCGA-81-5911 TCGA-OX-A56R 
        5.03         0.23         7.73         1.61        17.72         5.92 
TCGA-RR-A6KA TCGA-RR-A6KC TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-5393 TCGA-CS-5395 
        6.28        20.55         4.70         7.69        40.18        21.01 
TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 
        6.38        17.69        23.84        17.95        12.43         8.48 
TCGA-CS-6667 TCGA-CS-6669 TCGA-DB-5273 TCGA-DB-5276 TCGA-DB-5280 TCGA-DB-5281 
        7.56         7.40        81.96        72.92        36.56        78.28 
TCGA-DB-A4X9 TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A64O 
       46.42        46.72        39.78        37.45        33.57        25.48 
TCGA-DB-A64S TCGA-DB-A64X TCGA-DB-A75M TCGA-DB-A75P TCGA-DH-5143 TCGA-DH-A7UT 
       27.45        18.51        17.88        16.18        14.40        13.38 
TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 
        3.45        18.61        18.02         6.74        13.38         8.45 
TCGA-DU-5871 TCGA-DU-6392 TCGA-DU-6395 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 
       18.94       211.17        49.02        87.45         7.04        11.64 
TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-7006 TCGA-DU-7008 
      133.74        19.89        16.83        94.52        11.47       156.23 
TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7019 TCGA-DU-7290 
      105.21         6.54         8.84        90.77        26.30        10.36 
TCGA-DU-7299 TCGA-DU-7301 TCGA-DU-7304 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 
       44.02        25.91        23.31         5.10        23.74        14.60 
TCGA-DU-8163 TCGA-DU-8165 TCGA-DU-8167 TCGA-DU-A5TR TCGA-DU-A5TT TCGA-DU-A5TU 
       20.68        19.13        15.48        12.59         4.96         3.65 
TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S7 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O 
        5.65        12.20         7.23        11.41        26.76         7.13 
TCGA-DU-A7TD TCGA-DU-A7TJ TCGA-E1-5303 TCGA-E1-5307 TCGA-E1-A7YV TCGA-E1-A7YW 
        7.50         0.56        67.46        57.93        32.45        36.82 
TCGA-E1-A7Z6 TCGA-F6-A8O4 TCGA-FG-5963 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6691 
       32.35         0.20        25.48        18.77        14.93        23.97 
TCGA-FG-6692 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8189 
       18.44        20.09        12.95        13.68        14.24        22.52 
TCGA-FG-8191 TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60L 
       32.61        10.72        18.38        23.70        14.76        16.41 
TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7470 TCGA-HT-7473 
       28.54        10.78         5.72        27.52        40.11        16.54 
TCGA-HT-7474 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7482 
        3.75         6.54        24.26         6.38        40.34       106.95 
TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7609 
      172.77         4.01        29.85        23.18       122.47        45.99 
TCGA-HT-7611 TCGA-HT-7676 TCGA-HT-7680 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7690 
       57.60         0.16         0.76         6.05        42.74         0.10 
TCGA-HT-7691 TCGA-HT-7693 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7858 TCGA-HT-7860 
        0.10        17.52        39.48        19.23        50.63         0.49 
TCGA-HT-7873 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 
       23.61         3.68         5.33         3.72        11.28        31.43 
TCGA-HT-8011 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 
       16.24        63.55         0.10        37.87        33.01        12.23 
TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8110 TCGA-HT-8113 TCGA-HT-8114 
        0.10         0.46         2.50        13.78        29.59        34.19 
TCGA-HT-A4DS TCGA-HT-A5R5 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 
        0.23         0.13        27.35         0.10         5.33         2.70 
TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HW-7489 
        1.81        16.14        17.65         2.43        10.52         8.32 
TCGA-HW-7490 TCGA-HW-7493 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-A5KK 
       19.23        35.90        21.70        21.60        19.59        12.76 
TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-KT-A7W1 TCGA-P5-A5EW TCGA-P5-A5EY 
       20.81        20.71        19.00        14.40         6.71         2.37 
TCGA-P5-A5F1 TCGA-P5-A5F4 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A733 
        5.88         0.76         0.16        10.42        13.25        13.61 
TCGA-QH-A65S TCGA-QH-A6CS TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6X3 
        2.53        19.33        14.53        13.61        12.23        10.29 
TCGA-QH-A6XA TCGA-QH-A6XC TCGA-RY-A843 TCGA-RY-A845 TCGA-S9-A6TS TCGA-S9-A6TU 
       16.50         5.03         2.07        19.59        62.17        87.12 
TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA 
       22.95        17.62        16.08        98.24        95.93         5.85 
TCGA-S9-A6WG TCGA-S9-A6WM TCGA-S9-A6WO TCGA-S9-A6WQ TCGA-S9-A7IX TCGA-S9-A7IZ 
       80.12        19.86        18.61        14.07        22.32         7.13 
TCGA-S9-A7J0 TCGA-S9-A7QX TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 
       20.02        13.12        10.39        99.06        30.05        98.63 
TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84C 
       11.97        49.45        48.33        34.78        48.39        16.18 
TCGA-TM-A84F TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84L TCGA-TM-A84T TCGA-VM-A8C9 
       59.05        30.44        28.08        40.83        23.80        30.08 
TCGA-VM-A8CD TCGA-VM-A8CH TCGA-VV-A86M TCGA-VW-A8FI TCGA-WH-A86K TCGA-WY-A859 
        7.89        23.47        16.01         8.05        13.32        39.88 
TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       43.40        45.80        46.88        37.71        20.81 

  DEL PEAK 43(19Q13.41) MUTATED DEL PEAK 43(19Q13.41) WILD-TYPE 
                           0.03                            0.10 
  DEL PEAK 43(19Q13.41) MUTATED DEL PEAK 43(19Q13.41) WILD-TYPE 
                         182.33                          211.17 
  DEL PEAK 43(19Q13.41) MUTATED DEL PEAK 43(19Q13.41) WILD-TYPE 
                          17.19                           13.38 
[1] "0.0 - 182.3 (17.2)" "0.1 - 211.2 (13.4)"
[1] "hr=" "2.5"
D75V2, continuous
D75V3, binary
                                 cls
clus                                0   1
  DEL PEAK 43(19Q13.41) MUTATED    99 247
  DEL PEAK 43(19Q13.41) WILD-TYPE 471 225
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 43(19Q13.41) MUTATED     99  247
  DEL PEAK 43(19Q13.41) WILD-TYPE  471  225
                        clus
vv                       DEL PEAK 43(19Q13.41) MUTATED
  BRAIN                                             99
  CENTRAL NERVOUS SYSTEM                           247
                        clus
vv                       DEL PEAK 43(19Q13.41) WILD-TYPE
  BRAIN                                              471
  CENTRAL NERVOUS SYSTEM                             225
[1] 2 2
[1] FALSE
D75V4, binary
                                 cls
clus                                0   1
  DEL PEAK 43(19Q13.41) MUTATED   151 195
  DEL PEAK 43(19Q13.41) WILD-TYPE 279 417
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 43(19Q13.41) MUTATED    151  195
  DEL PEAK 43(19Q13.41) WILD-TYPE  279  417
        clus
vv       DEL PEAK 43(19Q13.41) MUTATED DEL PEAK 43(19Q13.41) WILD-TYPE
  FEMALE                           151                             279
  MALE                             195                             417
[1] 2 2
[1] FALSE
D75V5, continuous
                                 vv
clus                              ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  DEL PEAK 43(19Q13.41) MUTATED            50                             3
  DEL PEAK 43(19Q13.41) WILD-TYPE         126                            24
                                 vv
clus                              OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  DEL PEAK 43(19Q13.41) MUTATED                 53               144
  DEL PEAK 43(19Q13.41) WILD-TYPE               65                34
                                 vv
clus                              TREATED PRIMARY GBM
  DEL PEAK 43(19Q13.41) MUTATED                     4
  DEL PEAK 43(19Q13.41) WILD-TYPE                  14
                                 vv
clus                              UNTREATED PRIMARY (DE NOVO) GBM
  DEL PEAK 43(19Q13.41) MUTATED                                92
  DEL PEAK 43(19Q13.41) WILD-TYPE                             433
D75V6, multiclass
                                 clus
vv                                DEL PEAK 43(19Q13.41) MUTATED
  ASTROCYTOMA                                                50
  GLIOBLASTOMA MULTIFORME (GBM)                               3
  OLIGOASTROCYTOMA                                           53
  OLIGODENDROGLIOMA                                         144
  TREATED PRIMARY GBM                                         4
  UNTREATED PRIMARY (DE NOVO) GBM                            92
                                 clus
vv                                DEL PEAK 43(19Q13.41) WILD-TYPE
  ASTROCYTOMA                                                 126
  GLIOBLASTOMA MULTIFORME (GBM)                                24
  OLIGOASTROCYTOMA                                             65
  OLIGODENDROGLIOMA                                            34
  TREATED PRIMARY GBM                                          14
  UNTREATED PRIMARY (DE NOVO) GBM                             433
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D75V7, binary
                                 cls
clus                                0   1
  DEL PEAK 43(19Q13.41) MUTATED   111 235
  DEL PEAK 43(19Q13.41) WILD-TYPE 363 333
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 43(19Q13.41) MUTATED    111  235
  DEL PEAK 43(19Q13.41) WILD-TYPE  363  333
     clus
vv    DEL PEAK 43(19Q13.41) MUTATED DEL PEAK 43(19Q13.41) WILD-TYPE
  NO                            111                             363
  YES                           235                             333
[1] 2 2
[1] FALSE
                                 vv
clus                              AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 43(19Q13.41) MUTATED                                  0     8
  DEL PEAK 43(19Q13.41) WILD-TYPE                                1    13
                                 vv
clus                              BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 43(19Q13.41) MUTATED                          18   310
  DEL PEAK 43(19Q13.41) WILD-TYPE                        46   612
D75V8, multiclass
                                  clus
vv                                 DEL PEAK 43(19Q13.41) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                             0
  ASIAN                                                        8
  BLACK OR AFRICAN AMERICAN                                   18
  WHITE                                                      310
                                  clus
vv                                 DEL PEAK 43(19Q13.41) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                               1
  ASIAN                                                         13
  BLACK OR AFRICAN AMERICAN                                     46
  WHITE                                                        612
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D75V9, binary
                                 cls
clus                                0   1
  DEL PEAK 43(19Q13.41) MUTATED    11 303
  DEL PEAK 43(19Q13.41) WILD-TYPE  19 588
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 43(19Q13.41) MUTATED     11  303
  DEL PEAK 43(19Q13.41) WILD-TYPE   19  588
                        clus
vv                       DEL PEAK 43(19Q13.41) MUTATED
  HISPANIC OR LATINO                                11
  NOT HISPANIC OR LATINO                           303
                        clus
vv                       DEL PEAK 43(19Q13.41) WILD-TYPE
  HISPANIC OR LATINO                                  19
  NOT HISPANIC OR LATINO                             588
[1] 2 2
[1] FALSE

Clustering(76) Variable = DEL PEAK 44(19Q13.43) MUTATION ANALYSIS
D76V1, survival
                                 sevent
clus2                               0   1
  DEL PEAK 44(19Q13.43) MUTATED   225 105
  DEL PEAK 44(19Q13.43) WILD-TYPE 255 454
  DEL PEAK 44(19Q13.43) MUTATED DEL PEAK 44(19Q13.43) WILD-TYPE 
                            330                             709 
  DEL PEAK 44(19Q13.43) MUTATED DEL PEAK 44(19Q13.43) WILD-TYPE 
                            105                             454 
$`DEL PEAK 44(19Q13.43) MUTATED`
TCGA-02-0010 TCGA-02-0025 TCGA-02-0026 TCGA-02-0028 TCGA-02-0034 TCGA-02-0055 
       35.41        42.74        24.59        90.58        14.14         2.50 
TCGA-02-0058 TCGA-02-0060 TCGA-02-0104 TCGA-02-0106 TCGA-02-0258 TCGA-02-0281 
        8.35         6.02        65.00        11.67        16.54         3.98 
TCGA-02-0321 TCGA-02-0325 TCGA-02-0432 TCGA-02-0456 TCGA-02-2466 TCGA-06-0132 
        9.90        10.62        47.11         3.35        16.80        25.35 
TCGA-06-0394 TCGA-06-0745 TCGA-06-0875 TCGA-06-2561 TCGA-06-2569 TCGA-06-2570 
       10.82         7.86        43.46        17.65         0.43        31.50 
TCGA-06-5411 TCGA-06-5859 TCGA-06-A5U0 TCGA-06-A6S1 TCGA-08-0344 TCGA-08-0346 
        8.35         4.57         4.70         2.56       115.86         8.42 
TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0358 TCGA-08-0386 TCGA-08-0392 
        9.80        29.23        65.33        22.29        18.02         0.72 
TCGA-08-0516 TCGA-08-0517 TCGA-12-0619 TCGA-12-0691 TCGA-12-0827 TCGA-12-1088 
       19.59        58.68        34.92        12.13        38.76       127.59 
TCGA-12-1095 TCGA-12-1097 TCGA-12-1598 TCGA-12-1602 TCGA-12-3651 TCGA-14-0740 
       15.85        14.53        15.65         6.77        12.69        11.97 
TCGA-14-0783 TCGA-14-0787 TCGA-14-0862 TCGA-14-0865 TCGA-14-1458 TCGA-14-1821 
        6.21         2.24         2.89        16.50         6.67        17.79 
TCGA-14-4157 TCGA-15-1444 TCGA-16-0850 TCGA-16-0861 TCGA-16-1460 TCGA-19-0960 
        3.42        50.53        16.37         4.31         6.41         8.61 
TCGA-19-1388 TCGA-19-1390 TCGA-19-2629 TCGA-19-A6J5 TCGA-26-1442 TCGA-26-5133 
       12.95        25.38        24.23        28.54        31.33        14.86 
TCGA-26-5136 TCGA-27-1834 TCGA-27-2519 TCGA-27-2521 TCGA-28-1746 TCGA-32-1973 
       18.97        40.54        10.39        10.39         0.20        21.07 
TCGA-32-1987 TCGA-32-2491 TCGA-32-4208 TCGA-32-4210 TCGA-41-2575 TCGA-76-4925 
       14.86        12.23        21.14         3.72         9.53         4.80 
TCGA-76-4929 TCGA-76-4931 TCGA-76-6193 TCGA-76-6285 TCGA-76-6662 TCGA-76-6664 
        3.65         9.17         2.70         8.35         9.27         7.79 
TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5394 TCGA-CS-5396 
       43.89        18.15        10.62        64.64         0.10         9.96 
TCGA-CS-6666 TCGA-CS-6668 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 
        8.48         8.02         6.61       122.73        81.96        75.25 
TCGA-DB-5275 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-A4XA TCGA-DB-A4XB 
       47.93        50.86        50.17        44.52        18.84        30.21 
TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R 
       72.95        31.63        24.20        30.12         5.98        31.40 
TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A75K TCGA-DB-A75L TCGA-DH-5140 
       27.81        29.23        14.40        12.10        11.24        19.96 
TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D 
       31.82        30.31         8.02        30.21        42.05        27.81 
TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DU-5849 TCGA-DU-5851 
       17.19        17.19        54.25        13.12        14.56        17.46 
TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 
        6.81       182.33        17.49        15.16        52.11        22.42 
TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6408 TCGA-DU-6410 
       75.16        46.06        65.75         1.22       114.08         7.96 
TCGA-DU-6542 TCGA-DU-7007 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7014 TCGA-DU-7015 
        7.73        62.96       138.28        14.99       117.40        90.77 
TCGA-DU-7018 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7300 TCGA-DU-7302 TCGA-DU-7306 
       30.67        94.32        18.94        62.01        60.30        41.98 
TCGA-DU-7309 TCGA-DU-8164 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TS TCGA-DU-A6S2 
        2.76        21.40        14.17        14.24        15.12         8.65 
TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S8 TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 
        2.70        77.98         5.98        21.30        17.98       124.50 
TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TG TCGA-E1-5302 TCGA-E1-5304 
       77.88        42.31        23.51        44.42        50.14        41.13 
TCGA-E1-5305 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YO 
       79.99       134.27        78.21        95.57       130.78        75.02 
TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-FG-5962 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6690 
       14.33         0.23        47.77        34.36        36.82        24.99 
TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-8186 TCGA-FG-8187 
       15.35        17.88        22.55        20.61        16.01        20.09 
TCGA-FG-8188 TCGA-FG-A4MT TCGA-FG-A4MX TCGA-FG-A60K TCGA-FG-A6IZ TCGA-FG-A6J1 
       14.96        38.27        18.71        17.82        15.02        16.44 
TCGA-FG-A6J3 TCGA-FG-A710 TCGA-FG-A713 TCGA-FG-A87N TCGA-HT-7467 TCGA-HT-7468 
       22.26        36.66        20.45        13.58         0.10         6.67 
TCGA-HT-7469 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7475 TCGA-HT-7480 TCGA-HT-7481 
       11.54         0.13         0.03        17.42        75.19        95.93 
TCGA-HT-7483 TCGA-HT-7601 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 
      172.77         5.03         4.57        17.29         3.16        22.06 
TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7616 TCGA-HT-7677 TCGA-HT-7681 TCGA-HT-7687 
       45.99        56.09         0.23        16.24        44.68         0.10 
TCGA-HT-7689 TCGA-HT-7692 TCGA-HT-7695 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7874 
       14.96         2.96        14.53        39.09         0.23        37.15 
TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7881 TCGA-HT-8010 TCGA-HT-8012 TCGA-HT-8105 
        0.33         0.13        35.47         1.64         9.40         6.25 
TCGA-HT-8109 TCGA-HT-8111 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DV TCGA-HT-A5R7 
        5.56         0.23        28.27        15.72        26.04        20.22 
TCGA-HT-A5R9 TCGA-HT-A615 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61B TCGA-HT-A74K 
        0.07        16.93        16.83        21.40        17.52        15.35 
TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7491 TCGA-HW-7495 
       11.05         0.10        29.92        19.89        40.18         4.31 
TCGA-HW-8320 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-IK-8125 TCGA-KT-A74X TCGA-P5-A5EV 
       21.60        17.82        20.35        42.77        14.40         0.23 
TCGA-P5-A5EX TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F2 TCGA-P5-A5F6 TCGA-P5-A72Z 
        1.64         2.30         4.11         7.63         1.28        11.64 
TCGA-P5-A730 TCGA-P5-A731 TCGA-QH-A65R TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z 
        0.20         9.01        15.16        12.62        15.85        14.04 
TCGA-QH-A6CU TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 
       14.83         2.20         9.17        14.53        16.34        16.73 
TCGA-QH-A6X9 TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO 
        1.91        11.08        12.99        88.83        94.03        32.65 
TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A845 
       59.38        30.87         5.46         9.90        28.08        19.59 
TCGA-RY-A847 TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U2 
       30.67        37.84        34.49        31.33        28.70        23.64 
TCGA-S9-A6U5 TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WH TCGA-S9-A6WI 
       32.61       106.39        69.50        72.59        32.45        84.99 
TCGA-S9-A6WL TCGA-S9-A6WN TCGA-S9-A6WP TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IY 
       31.10        15.91        15.16        36.13         7.92        23.51 
TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QY TCGA-S9-A7QZ 
        8.19         2.04        17.03        15.06        28.37        13.02 
TCGA-S9-A7R1 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-TM-A7C5 TCGA-TM-A84B TCGA-TM-A84G 
      169.84        31.59        18.71        49.32        24.92        40.64 
TCGA-TM-A84J TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S 
       24.16        24.79        33.24        25.38        18.61        14.93 
TCGA-TM-A84T TCGA-TQ-A7RH TCGA-TQ-A7RW TCGA-VM-A8C8 TCGA-VM-A8CA TCGA-VM-A8CB 
       23.80        15.98        26.99        43.04        13.51         0.10 
TCGA-VM-A8CE TCGA-VV-A829 TCGA-VW-A7QS TCGA-W9-A837 TCGA-WY-A858 TCGA-WY-A859 
       35.93        37.05        23.21        51.06        43.96        39.88 

$`DEL PEAK 44(19Q13.43) WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0011 
       11.77         4.73        18.35        23.18        10.59        20.71 
TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 
       82.59        20.61        87.06        77.65        20.12        53.10 
TCGA-02-0027 TCGA-02-0033 TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 
       12.16         2.83         3.62        10.72        10.52        18.31 
TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 
        6.87        14.73         3.22        15.09        12.59         6.54 
TCGA-02-0057 TCGA-02-0059 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 
       19.86         9.57        19.73        26.43        28.70        25.05 
TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 
        5.49        10.19        20.84        27.25        89.72        22.72 
TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 
       12.62        51.32         8.81        57.76        16.96         3.48 
TCGA-02-0102 TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 
       27.02        17.65        23.18        92.65        99.98        15.65 
TCGA-02-0116 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0285 
       48.95        16.93        17.72        10.75        14.47        13.87 
TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0324 TCGA-02-0326 TCGA-02-0330 
       14.20        15.95        12.23         7.73         7.33        15.91 
TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 
       25.71         4.37        25.12        10.59        12.39        14.50 
TCGA-02-0430 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-2470 TCGA-02-2483 
       10.55        11.34         9.27        16.21        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 
       15.45        20.32         2.70         6.15        20.38        47.61 
TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0133 
        6.94         3.98        22.72        33.67        12.95        14.30 
TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 
       26.70        24.23        11.90         0.20        10.29         2.20 
TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 
       11.74         2.33        20.09        17.79        10.09         8.61 
TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 
       19.46        46.59        12.33        13.94        10.45         3.19 
TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 
       10.82         9.44        11.80         3.42        56.91        10.65 
TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 
        5.85        19.66         3.29        13.12         4.47         3.22 
TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 
        4.04        91.00         4.18        88.14        20.25         3.65 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 
       69.90        73.84        27.22        44.58        15.42        10.42 
TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 
       38.96         4.67         7.40         5.56         0.39         7.66 
TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 
        8.42         7.63         7.40        11.84         0.53        15.02 
TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 
       24.16         0.72        19.82        13.64        13.32        20.42 
TCGA-06-0241 TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 TCGA-06-0412 
       48.69         9.01         0.26        72.36         4.70         9.57 
TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 
        3.16        35.11        12.62         5.75         5.75         9.80 
TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0747 
        2.10        23.57        14.20        26.40        46.88         2.70 
TCGA-06-0749 TCGA-06-0750 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 
        2.70         0.92        46.19         5.65         7.17        40.41 
TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1087 
       16.57        20.78        26.76        23.93         6.84         4.04 
TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-1806 
       26.79        11.84        15.32        13.61        33.90        15.32 
TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 
        1.08        12.49         4.93        12.56        30.64         5.95 
TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-5408 TCGA-06-5410 TCGA-06-5412 
       16.64         5.98         4.37        11.74         3.55         4.54 
TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 
        8.81         8.98         8.55         6.71         2.73         3.75 
TCGA-06-5858 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        6.15         5.23         7.79         5.39         1.48       120.56 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.32        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-06-A5U1 TCGA-06-A6S0 TCGA-06-A7TK TCGA-06-A7TL TCGA-08-0244 
        4.96         1.87         3.12         5.39         5.42        22.68 
TCGA-08-0245 TCGA-08-0246 TCGA-08-0345 TCGA-08-0347 TCGA-08-0348 TCGA-08-0352 
       37.84         4.18         1.74        25.71        12.16         1.28 
TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0359 
        8.42        17.95        24.56        31.10        37.58         3.39 
TCGA-08-0375 TCGA-08-0380 TCGA-08-0389 TCGA-08-0390 TCGA-08-0509 TCGA-08-0510 
       12.23        14.93        15.35        13.97        12.56         4.27 
TCGA-08-0512 TCGA-08-0514 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 
       42.15        11.08        19.33        10.75         4.80         7.27 
TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 
       15.98        18.41         7.56        15.35        14.73        12.99 
TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 
       10.45         7.59        94.78         0.10        38.17        25.97 
TCGA-12-0688 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 
       26.66         3.65        20.38        28.41        15.06        53.85 
TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 
       43.23         7.63         9.73        14.93        14.86        91.76 
TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 TCGA-12-0828 
       24.79        18.48        10.62        23.51        27.78         8.94 
TCGA-12-0829 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 
       20.58         5.82         7.59        33.21        21.73        15.98 
TCGA-12-1094 TCGA-12-1096 TCGA-12-1098 TCGA-12-1099 TCGA-12-1599 TCGA-12-1600 
       12.23         9.11         3.98         4.14        25.68        14.73 
TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 
       59.77        44.02        26.93        15.22        10.95        34.92 
TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0781 
       14.53        14.93         3.22         2.04        15.12         0.95 
TCGA-14-0786 TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 
       23.05        11.24        13.78         3.25         1.35         5.39 
TCGA-14-0866 TCGA-14-0867 TCGA-14-0871 TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 
       26.33         2.04        28.93        15.95        19.30         0.79 
TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 
        1.38         1.12         3.75        32.05        58.78        23.11 
TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1459 
        7.10         1.15        30.18         0.92        40.96        12.43 
TCGA-14-1794 TCGA-14-1795 TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 
        0.99         1.97        17.85         7.63         5.88         7.17 
TCGA-14-2554 TCGA-14-2555 TCGA-14-3477 TCGA-15-0742 TCGA-15-1446 TCGA-15-1447 
       17.49         7.96         3.78        13.78        19.10        53.19 
TCGA-15-1449 TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 TCGA-16-1045 TCGA-16-1047 
       13.28         3.91        17.59        26.07        29.03         4.57 
TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-19-0955 
       10.29        14.01         9.14        21.24        13.97        11.77 
TCGA-19-0957 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 
       21.90         0.66        14.27         3.39        10.75         9.07 
TCGA-19-1387 TCGA-19-1389 TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 
        5.95         4.64         3.65         7.17        12.66         3.25 
TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 
        0.13         9.67         4.87         1.08         7.53         0.16 
TCGA-19-2625 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 
        4.08         7.00         7.04         6.64        17.19         8.02 
TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 
       18.90         4.73        12.10         1.78        22.49        14.07 
TCGA-19-5959 TCGA-19-5960 TCGA-19-A60I TCGA-19-A6J4 TCGA-26-1438 TCGA-26-1439 
       16.80        14.96        17.79         3.98        10.03        13.87 
TCGA-26-1440 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5134 TCGA-26-5135 
        9.73         7.13         9.37         9.40         5.49         8.88 
TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-26-A7UX TCGA-27-1830 TCGA-27-1831 
        1.58         7.92         2.33        19.33         5.06        16.60 
TCGA-27-1832 TCGA-27-1833 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 
        9.86        24.23        21.30        30.05        14.04        11.51 
TCGA-27-2518 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 
       24.76        16.08         7.59         2.86        14.40        15.78 
TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 
        2.53         9.21         8.35         7.63         8.48         1.22 
TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 
        1.55         2.83         0.13         0.66         6.74         4.77 
TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 
        7.30         5.26        14.93        11.28        17.88        14.53 
TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 
       11.77        31.27        23.44        11.01        13.64         5.16 
TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1976 TCGA-32-1977 
       22.68        12.76         5.42        15.39         0.49         0.10 
TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 
       15.85        19.50         1.18         4.67        12.69        16.93 
TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2616 TCGA-32-2632 TCGA-32-2634 
       20.78        15.02        15.95         7.36         8.84        22.78 
TCGA-32-2638 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 
       25.18        12.59        19.86        10.85        19.23         0.85 
TCGA-41-2572 TCGA-41-2573 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 
       13.35         8.94         0.99         4.44        11.84         0.20 
TCGA-41-5651 TCGA-41-6646 TCGA-4W-AA9S TCGA-4W-AA9T TCGA-74-6573 TCGA-74-6575 
       15.12        12.46         4.14        14.76         3.45        20.91 
TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4926 TCGA-76-4928 
        4.34        14.33         8.22         7.50         4.54         3.09 
TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6280 TCGA-76-6282 
        2.53        10.78        16.70         3.29        11.38        17.06 
TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6663 TCGA-81-5910 
       20.98         4.83         5.03         0.23         7.73         1.61 
TCGA-81-5911 TCGA-87-5896 TCGA-OX-A56R TCGA-RR-A6KA TCGA-RR-A6KC TCGA-CS-4938 
       17.72        26.30         5.92         6.28        20.55         4.70 
TCGA-CS-4941 TCGA-CS-5393 TCGA-CS-5395 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 
        7.69        40.18        21.01         6.38        17.69        23.84 
TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6667 TCGA-CS-6669 TCGA-DB-5276 TCGA-DB-5280 
       17.95        12.43         7.56         7.40        72.92        36.56 
TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF 
       78.28        46.42        46.72        39.78        37.45        33.57 
TCGA-DB-A64O TCGA-DB-A64S TCGA-DB-A64X TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P 
       25.48        27.45        18.51        17.88        30.74        16.18 
TCGA-DH-5143 TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5852 
       14.40        13.38         3.45        18.61        18.02         6.74 
TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5871 TCGA-DU-6392 TCGA-DU-6395 TCGA-DU-6401 
       13.38         8.45        18.94       211.17        49.02        87.45 
TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 
        7.04        11.64       133.74        19.89        16.83        94.52 
TCGA-DU-7006 TCGA-DU-7008 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7019 
       11.47       156.23       105.21         6.54         8.84        26.30 
TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7299 TCGA-DU-7301 TCGA-DU-7304 TCGA-DU-8158 
       10.36         7.96        44.02        25.91        23.31         5.10 
TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 
       23.74        14.60        20.68        19.13        16.96        15.48 
TCGA-DU-A5TR TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S7 
       12.59         4.96         3.65         5.65        12.20         7.23 
TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A7TD TCGA-DU-A7TJ TCGA-E1-5303 
       11.41        26.76         7.13         7.50         0.56        67.46 
TCGA-E1-5307 TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7Z6 TCGA-F6-A8O4 TCGA-FG-5963 
       57.93        32.45        36.82        32.35         0.20        25.48 
TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7643 TCGA-FG-8181 
       18.77        14.93        23.97        18.44        20.09        12.95 
TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MU TCGA-FG-A4MW 
       13.68        14.24        22.52        32.61        10.72        18.38 
TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60L TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A711 
       23.70        14.76        16.41        28.54        10.78        48.69 
TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7470 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7476 
        5.72        27.52        40.11        16.54         3.75         6.54 
TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7482 TCGA-HT-7485 TCGA-HT-7602 
       24.26         6.38        40.34       106.95         4.01        29.85 
TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7611 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7680 
       23.18       122.47        57.60        14.27         0.16         0.76 
TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7688 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7693 
        6.05        42.74        31.69         0.10         0.10        17.52 
TCGA-HT-7694 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 
        6.90        39.48        19.23        50.63         0.49        23.61 
TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8011 
        3.68         5.33         3.72        11.28        31.43        16.24 
TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8106 
       63.55         0.10        37.87        33.01        12.23         0.10 
TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8110 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-A4DS 
        0.46         2.50        13.78        29.59        34.19         0.23 
TCGA-HT-A5R5 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A616 
        0.13        27.35         0.10         5.33         2.70         1.81 
TCGA-HT-A617 TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HW-7489 TCGA-HW-7490 
       16.14        17.65         2.43        10.52         8.32        19.23 
TCGA-HW-7493 TCGA-HW-8319 TCGA-HW-8321 TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM 
       35.90        21.70        19.59        12.76        20.81        20.71 
TCGA-IK-7675 TCGA-KT-A7W1 TCGA-P5-A5EW TCGA-P5-A5EY TCGA-P5-A5F1 TCGA-P5-A5F4 
       19.00        14.40         6.71         2.37         5.88         0.76 
TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A733 TCGA-QH-A65S TCGA-QH-A6CS 
        0.16        10.42        13.25        13.61         2.53        19.33 
TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6X3 TCGA-QH-A6XA TCGA-QH-A6XC 
       14.53        13.61        12.23        10.29        16.50         5.03 
TCGA-RY-A843 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6U0 TCGA-S9-A6U1 
        2.07        62.17        87.12        18.77        22.95        17.62 
TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6WG TCGA-S9-A6WM 
       16.08        98.24        95.93         5.85        80.12        19.86 
TCGA-S9-A6WO TCGA-S9-A6WQ TCGA-S9-A7IX TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7QX 
       18.61        14.07        22.32         7.13        20.02        13.12 
TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A89Z TCGA-TM-A7C3 
       10.39        99.06        30.05        98.63        11.97        49.45 
TCGA-TM-A7C4 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84H 
       48.33        34.78        48.39        16.18        59.05        30.44 
TCGA-TM-A84I TCGA-TM-A84L TCGA-VM-A8C9 TCGA-VM-A8CD TCGA-VM-A8CH TCGA-VV-A86M 
       28.08        40.83        30.08         7.89        23.47        16.01 
TCGA-VW-A8FI TCGA-WH-A86K TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D 
        8.05        13.32        43.40        45.80        46.88        37.71 
TCGA-WY-A85E 
       20.81 

  DEL PEAK 44(19Q13.43) MUTATED DEL PEAK 44(19Q13.43) WILD-TYPE 
                           0.03                            0.10 
  DEL PEAK 44(19Q13.43) MUTATED DEL PEAK 44(19Q13.43) WILD-TYPE 
                         182.33                          211.17 
  DEL PEAK 44(19Q13.43) MUTATED DEL PEAK 44(19Q13.43) WILD-TYPE 
                          17.82                           13.32 
[1] "0.0 - 182.3 (17.8)" "0.1 - 211.2 (13.3)"
[1] "hr=" "3"  
D76V2, continuous
D76V3, binary
                                 cls
clus                                0   1
  DEL PEAK 44(19Q13.43) MUTATED    84 248
  DEL PEAK 44(19Q13.43) WILD-TYPE 486 224
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 44(19Q13.43) MUTATED     84  248
  DEL PEAK 44(19Q13.43) WILD-TYPE  486  224
                        clus
vv                       DEL PEAK 44(19Q13.43) MUTATED
  BRAIN                                             84
  CENTRAL NERVOUS SYSTEM                           248
                        clus
vv                       DEL PEAK 44(19Q13.43) WILD-TYPE
  BRAIN                                              486
  CENTRAL NERVOUS SYSTEM                             224
[1] 2 2
[1] FALSE
D76V4, binary
                                 cls
clus                                0   1
  DEL PEAK 44(19Q13.43) MUTATED   143 189
  DEL PEAK 44(19Q13.43) WILD-TYPE 287 423
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 44(19Q13.43) MUTATED    143  189
  DEL PEAK 44(19Q13.43) WILD-TYPE  287  423
        clus
vv       DEL PEAK 44(19Q13.43) MUTATED DEL PEAK 44(19Q13.43) WILD-TYPE
  FEMALE                           143                             287
  MALE                             189                             423
[1] 2 2
[1] FALSE
D76V5, continuous
                                 vv
clus                              ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  DEL PEAK 44(19Q13.43) MUTATED            52                             4
  DEL PEAK 44(19Q13.43) WILD-TYPE         124                            23
                                 vv
clus                              OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  DEL PEAK 44(19Q13.43) MUTATED                 55               141
  DEL PEAK 44(19Q13.43) WILD-TYPE               63                37
                                 vv
clus                              TREATED PRIMARY GBM
  DEL PEAK 44(19Q13.43) MUTATED                     4
  DEL PEAK 44(19Q13.43) WILD-TYPE                  14
                                 vv
clus                              UNTREATED PRIMARY (DE NOVO) GBM
  DEL PEAK 44(19Q13.43) MUTATED                                76
  DEL PEAK 44(19Q13.43) WILD-TYPE                             449
D76V6, multiclass
                                 clus
vv                                DEL PEAK 44(19Q13.43) MUTATED
  ASTROCYTOMA                                                52
  GLIOBLASTOMA MULTIFORME (GBM)                               4
  OLIGOASTROCYTOMA                                           55
  OLIGODENDROGLIOMA                                         141
  TREATED PRIMARY GBM                                         4
  UNTREATED PRIMARY (DE NOVO) GBM                            76
                                 clus
vv                                DEL PEAK 44(19Q13.43) WILD-TYPE
  ASTROCYTOMA                                                 124
  GLIOBLASTOMA MULTIFORME (GBM)                                23
  OLIGOASTROCYTOMA                                             63
  OLIGODENDROGLIOMA                                            37
  TREATED PRIMARY GBM                                          14
  UNTREATED PRIMARY (DE NOVO) GBM                             449
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D76V7, binary
                                 cls
clus                                0   1
  DEL PEAK 44(19Q13.43) MUTATED   105 227
  DEL PEAK 44(19Q13.43) WILD-TYPE 369 341
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 44(19Q13.43) MUTATED    105  227
  DEL PEAK 44(19Q13.43) WILD-TYPE  369  341
     clus
vv    DEL PEAK 44(19Q13.43) MUTATED DEL PEAK 44(19Q13.43) WILD-TYPE
  NO                            105                             369
  YES                           227                             341
[1] 2 2
[1] FALSE
                                 vv
clus                              AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 44(19Q13.43) MUTATED                                  0     8
  DEL PEAK 44(19Q13.43) WILD-TYPE                                1    13
                                 vv
clus                              BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 44(19Q13.43) MUTATED                          13   301
  DEL PEAK 44(19Q13.43) WILD-TYPE                        51   621
D76V8, multiclass
                                  clus
vv                                 DEL PEAK 44(19Q13.43) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                             0
  ASIAN                                                        8
  BLACK OR AFRICAN AMERICAN                                   13
  WHITE                                                      301
                                  clus
vv                                 DEL PEAK 44(19Q13.43) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                               1
  ASIAN                                                         13
  BLACK OR AFRICAN AMERICAN                                     51
  WHITE                                                        621
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D76V9, binary
                                 cls
clus                                0   1
  DEL PEAK 44(19Q13.43) MUTATED    10 291
  DEL PEAK 44(19Q13.43) WILD-TYPE  20 600
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 44(19Q13.43) MUTATED     10  291
  DEL PEAK 44(19Q13.43) WILD-TYPE   20  600
                        clus
vv                       DEL PEAK 44(19Q13.43) MUTATED
  HISPANIC OR LATINO                                10
  NOT HISPANIC OR LATINO                           291
                        clus
vv                       DEL PEAK 44(19Q13.43) WILD-TYPE
  HISPANIC OR LATINO                                  20
  NOT HISPANIC OR LATINO                             600
[1] 2 2
[1] FALSE

Clustering(77) Variable = DEL PEAK 45(22Q13.32) MUTATION ANALYSIS
D77V1, survival
                                 sevent
clus2                               0   1
  DEL PEAK 45(22Q13.32) MUTATED    76 204
  DEL PEAK 45(22Q13.32) WILD-TYPE 404 355
  DEL PEAK 45(22Q13.32) MUTATED DEL PEAK 45(22Q13.32) WILD-TYPE 
                            280                             759 
  DEL PEAK 45(22Q13.32) MUTATED DEL PEAK 45(22Q13.32) WILD-TYPE 
                            204                             355 
$`DEL PEAK 45(22Q13.32) MUTATED`
TCGA-02-0007 TCGA-02-0010 TCGA-02-0015 TCGA-02-0016 TCGA-02-0026 TCGA-02-0027 
       23.18        35.41        20.61        87.06        24.59        12.16 
TCGA-02-0039 TCGA-02-0043 TCGA-02-0054 TCGA-02-0057 TCGA-02-0059 TCGA-02-0060 
       10.52        18.31         6.54        19.86         9.57         6.02 
TCGA-02-0075 TCGA-02-0079 TCGA-02-0086 TCGA-02-0099 TCGA-02-0113 TCGA-02-0260 
       20.84        27.25         8.81         3.48        92.65        16.93 
TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0321 TCGA-02-0325 TCGA-02-0326 
       17.72        10.75        14.47         9.90        10.62         7.33 
TCGA-02-0333 TCGA-02-0456 TCGA-02-2466 TCGA-02-2483 TCGA-02-2486 TCGA-06-0129 
        4.37         3.35        16.80        15.32        20.32        33.67 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0145 TCGA-06-0147 TCGA-06-0152 TCGA-06-0158 
        0.20        10.29         2.33        17.79        12.33        10.82 
TCGA-06-0159 TCGA-06-0162 TCGA-06-0164 TCGA-06-0166 TCGA-06-0168 TCGA-06-0175 
        9.44         3.42        56.91         5.85        19.66         4.04 
TCGA-06-0182 TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0194 
        3.65        73.84        27.22        44.58        15.42         4.67 
TCGA-06-0195 TCGA-06-0197 TCGA-06-0211 TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 
        7.40         5.56        11.84        24.16         0.72        19.82 
TCGA-06-0237 TCGA-06-0241 TCGA-06-0397 TCGA-06-0402 TCGA-06-0410 TCGA-06-0744 
       13.64        48.69         9.01         0.26         4.70        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0875 TCGA-06-0878 TCGA-06-0882 TCGA-06-0939 
        7.86         2.70        43.46         7.17        20.78        26.76 
TCGA-06-1084 TCGA-06-1804 TCGA-06-1806 TCGA-06-2558 TCGA-06-2562 TCGA-06-2565 
       23.93        13.61        15.32        12.49        12.56        16.64 
TCGA-06-2567 TCGA-06-5408 TCGA-06-5411 TCGA-06-5413 TCGA-06-5418 TCGA-06-5856 
        4.37        11.74         8.35         8.81         2.73         3.75 
TCGA-06-6389 TCGA-06-6390 TCGA-06-6693 TCGA-06-6697 TCGA-06-6698 TCGA-06-A5U1 
        7.79         5.39       120.56        12.85         4.77         1.87 
TCGA-06-A6S1 TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 TCGA-08-0349 TCGA-08-0350 
        2.56        22.68        37.84         4.18         9.80        29.23 
TCGA-08-0354 TCGA-08-0357 TCGA-08-0386 TCGA-08-0389 TCGA-08-0392 TCGA-08-0512 
       17.95        37.58        18.02        15.35         0.72        42.15 
TCGA-08-0514 TCGA-08-0516 TCGA-08-0520 TCGA-08-0525 TCGA-12-0619 TCGA-12-0620 
       11.08        19.59        10.75        15.98        34.92        10.45 
TCGA-12-0656 TCGA-12-0662 TCGA-12-0670 TCGA-12-0707 TCGA-12-0820 TCGA-12-0821 
       94.78        38.17        25.97        28.41        18.48        10.62 
TCGA-12-0826 TCGA-12-0827 TCGA-12-1088 TCGA-12-1091 TCGA-12-1096 TCGA-12-1097 
       27.78        38.76       127.59        33.21         9.11        14.53 
TCGA-12-1098 TCGA-12-1598 TCGA-12-1600 TCGA-12-3646 TCGA-12-3651 TCGA-12-3653 
        3.98        15.65        14.73        44.02        12.69        14.53 
TCGA-12-5295 TCGA-14-0736 TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0862 
       14.93        15.12         6.21        23.05         2.24         2.89 
TCGA-14-0865 TCGA-14-0867 TCGA-14-0871 TCGA-14-1034 TCGA-14-1037 TCGA-14-1402 
       16.50         2.04        28.93        15.95        19.30        32.05 
TCGA-14-1450 TCGA-14-1454 TCGA-14-1794 TCGA-14-1821 TCGA-14-2554 TCGA-14-3477 
       58.78        30.18         0.99        17.79        17.49         3.78 
TCGA-15-0742 TCGA-15-1444 TCGA-15-1447 TCGA-16-1056 TCGA-16-1062 TCGA-19-0962 
       13.78        50.53        53.19        14.01        21.24         0.66 
TCGA-19-0964 TCGA-19-1385 TCGA-19-1389 TCGA-19-1392 TCGA-19-1791 TCGA-19-2620 
        3.39        10.75         4.64         3.65         0.13         4.87 
TCGA-19-2623 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-5947 TCGA-19-5956 
        7.53         4.08        24.23         7.00         6.64        22.49 
TCGA-19-5958 TCGA-19-5960 TCGA-19-A60I TCGA-19-A6J4 TCGA-26-1442 TCGA-26-5132 
       14.07        14.96        17.79         3.98        31.33         9.40 
TCGA-26-5136 TCGA-26-6173 TCGA-27-1830 TCGA-27-1832 TCGA-27-1834 TCGA-27-1835 
       18.97         7.92         5.06         9.86        40.54        21.30 
TCGA-27-1838 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2527 TCGA-28-1746 
       11.51        10.39        10.39        16.08        14.40         0.20 
TCGA-28-1752 TCGA-28-1756 TCGA-28-2506 TCGA-28-2509 TCGA-28-5207 TCGA-28-5208 
        8.48         2.83         6.74         4.77        11.28        17.88 
TCGA-28-5213 TCGA-28-5214 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 TCGA-32-1978 
       31.27        23.44        15.39        21.07         0.49        15.85 
TCGA-32-1980 TCGA-32-1986 TCGA-32-2491 TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 
        1.18        12.69        12.23        15.95         8.84        22.78 
TCGA-32-4208 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3915 TCGA-41-4097 
       21.14        13.35         8.94         9.53        11.84         0.20 
TCGA-41-6646 TCGA-4W-AA9S TCGA-74-6575 TCGA-74-6581 TCGA-76-4925 TCGA-76-4926 
       12.46         4.14        20.91         8.22         4.80         4.54 
TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 TCGA-76-6280 TCGA-76-6285 TCGA-76-6657 
        3.65         9.17         2.53        11.38         8.35         5.03 
TCGA-87-5896 TCGA-OX-A56R TCGA-CS-4943 TCGA-CS-5393 TCGA-CS-5397 TCGA-CS-6186 
       26.30         5.92        18.15        40.18         6.38        17.69 
TCGA-DB-5273 TCGA-DB-5277 TCGA-DB-A4XB TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A75O 
       81.96        50.86        30.21        24.20        25.48        30.74 
TCGA-DH-A669 TCGA-DU-5847 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-6399 TCGA-DU-6402 
       30.21        18.02         6.74        13.38        65.75         7.04 
TCGA-DU-6404 TCGA-DU-6542 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7290 TCGA-DU-7298 
      133.74         7.73        62.96       156.23        10.36        18.94 
TCGA-DU-7306 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8165 TCGA-DU-8167 TCGA-DU-A5TP 
       41.98         5.10        23.74        19.13        15.48        14.24 
TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TY TCGA-DU-A76K TCGA-DU-A76L TCGA-E1-5303 
        4.96         3.65        12.20        11.41        26.76        67.46 
TCGA-E1-5304 TCGA-E1-5322 TCGA-FG-7643 TCGA-FG-A4MY TCGA-FG-A60L TCGA-HT-7477 
       41.13       130.78        20.09        23.70        16.41        24.26 
TCGA-HT-7611 TCGA-HT-7686 TCGA-HT-7688 TCGA-HT-7690 TCGA-HT-7860 TCGA-HT-A614 
       57.60        42.74        31.69         0.10         0.49         2.70 
TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A61B TCGA-HW-A5KK TCGA-P5-A5F6 TCGA-P5-A72U 
       16.14        16.83        17.52        12.76         1.28         0.16 
TCGA-QH-A6CS TCGA-RY-A83Z TCGA-S9-A6TS TCGA-S9-A6UA TCGA-S9-A7IX TCGA-S9-A7J0 
       19.33         9.90        62.17         5.85        22.32        20.02 
TCGA-S9-A7R2 TCGA-S9-A7R7 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A84B TCGA-TM-A84G 
       10.39        98.63        18.71        11.97        24.92        40.64 
TCGA-TQ-A7RW TCGA-VM-A8CD TCGA-WH-A86K TCGA-WY-A859 
       26.99         7.89        13.32        39.88 

$`DEL PEAK 45(22Q13.32) WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0009 TCGA-02-0011 TCGA-02-0014 
       11.77         4.73        18.35        10.59        20.71        82.59 
TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 TCGA-02-0025 TCGA-02-0028 TCGA-02-0033 
       77.65        20.12        53.10        42.74        90.58         2.83 
TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 
       14.14         3.62        10.72         6.87        14.73         3.22 
TCGA-02-0051 TCGA-02-0052 TCGA-02-0055 TCGA-02-0058 TCGA-02-0064 TCGA-02-0068 
       15.09        12.59         2.50         8.35        19.73        26.43 
TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0080 TCGA-02-0083 
       28.70        25.05         5.49        10.19        89.72        22.72 
TCGA-02-0084 TCGA-02-0085 TCGA-02-0087 TCGA-02-0089 TCGA-02-0102 TCGA-02-0104 
       12.62        51.32        57.76        16.96        27.02        65.00 
TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 
       11.67        17.65        23.18        99.98        15.65        48.95 
TCGA-02-0258 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 
       16.54         3.98        13.87        14.20        15.95        12.23 
TCGA-02-0324 TCGA-02-0330 TCGA-02-0332 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 
        7.73        15.91        25.71        25.12        10.59        12.39 
TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 
       14.50        10.55        47.11        11.34         9.27        16.21 
TCGA-02-2470 TCGA-02-2485 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 
       12.92        15.45         2.70         6.15        20.38        47.61 
TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 
        6.94         3.98        22.72        12.95        25.35        14.30 
TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0142 TCGA-06-0143 TCGA-06-0146 
       26.70        24.23        11.90         2.20        11.74        20.09 
TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0154 TCGA-06-0155 
       10.09         8.61        19.46        46.59        13.94        10.45 
TCGA-06-0157 TCGA-06-0160 TCGA-06-0165 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 
        3.19        11.80        10.65         3.29        13.12         4.47 
TCGA-06-0174 TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0184 
        3.22        91.00         4.18        88.14        20.25        69.90 
TCGA-06-0190 TCGA-06-0192 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 
       10.42        38.96         0.39         7.66         8.42         7.63 
TCGA-06-0210 TCGA-06-0213 TCGA-06-0214 TCGA-06-0238 TCGA-06-0240 TCGA-06-0394 
        7.40         0.53        15.02        13.32        20.42        10.82 
TCGA-06-0409 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 
       72.36         9.57         3.16        35.11        12.62         5.75 
TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 
        5.75         9.80         2.10        23.57        14.20        26.40 
TCGA-06-0749 TCGA-06-0750 TCGA-06-0876 TCGA-06-0877 TCGA-06-0879 TCGA-06-0881 
        2.70         0.92        46.19         5.65        40.41        16.57 
TCGA-06-1086 TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1805 
        6.84         4.04        26.79        11.84        15.32        33.90 
TCGA-06-2557 TCGA-06-2559 TCGA-06-2561 TCGA-06-2563 TCGA-06-2564 TCGA-06-2566 
        1.08         4.93        17.65        30.64         5.95         5.98 
TCGA-06-2569 TCGA-06-2570 TCGA-06-5410 TCGA-06-5412 TCGA-06-5414 TCGA-06-5415 
        0.43        31.50         3.55         4.54         8.98         8.55 
TCGA-06-5416 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6391 TCGA-06-6694 
        6.71         6.15         4.57         5.23         1.48         7.36 
TCGA-06-6695 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-06-A5U0 TCGA-06-A6S0 
        8.32         1.55         4.77         4.96         4.70         3.12 
TCGA-06-A7TK TCGA-06-A7TL TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 
        5.39         5.42       115.86         1.74         8.42        25.71 
TCGA-08-0348 TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 TCGA-08-0355 TCGA-08-0356 
       12.16        65.33         1.28         8.42        24.56        31.10 
TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0390 TCGA-08-0509 
       22.29         3.39        12.23        14.93        13.97        12.56 
TCGA-08-0510 TCGA-08-0517 TCGA-08-0518 TCGA-08-0521 TCGA-08-0524 TCGA-08-0529 
        4.27        58.68        19.33         4.80         7.27        18.41 
TCGA-08-0531 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0654 TCGA-12-0657 
        7.56        15.35        14.73        12.99         7.59         0.10 
TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0769 TCGA-12-0772 
       26.66        12.13         3.65        20.38        15.06        53.85 
TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 
       43.23         7.63         9.73        14.93        14.86        91.76 
TCGA-12-0819 TCGA-12-0822 TCGA-12-0828 TCGA-12-0829 TCGA-12-1089 TCGA-12-1090 
       24.79        23.51         8.94        20.58         5.82         7.59 
TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1099 TCGA-12-1599 
       21.73        15.98        12.23        15.85         4.14        25.68 
TCGA-12-1602 TCGA-12-3644 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 
        6.77        59.77        26.93        15.22        10.95        34.92 
TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 TCGA-14-0789 TCGA-14-0790 
        3.22         2.04        11.97         0.95        11.24        13.78 
TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 TCGA-14-0866 TCGA-14-1043 TCGA-14-1395 
        3.25         1.35         5.39        26.33         0.79         1.38 
TCGA-14-1396 TCGA-14-1401 TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 TCGA-14-1455 
        1.12         3.75        23.11         7.10         1.15         0.92 
TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1795 TCGA-14-1823 TCGA-14-1825 
       40.96         6.67        12.43         1.97        17.85         7.63 
TCGA-14-1827 TCGA-14-1829 TCGA-14-2555 TCGA-14-4157 TCGA-15-1446 TCGA-15-1449 
        5.88         7.17         7.96         3.42        19.10        13.28 
TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 
        3.91        17.59        26.07        16.37         4.31        29.03 
TCGA-16-1047 TCGA-16-1055 TCGA-16-1060 TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 
        4.57        10.29         9.14        13.97         6.41        11.77 
TCGA-19-0957 TCGA-19-0960 TCGA-19-0963 TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 
       21.90         8.61        14.27         9.07         5.95        12.95 
TCGA-19-1390 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-2619 TCGA-19-2621 
       25.38         7.17        12.66         3.25         9.67         1.08 
TCGA-19-2624 TCGA-19-4065 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 
        0.16         7.04        17.19         8.02        18.90         4.73 
TCGA-19-5954 TCGA-19-5955 TCGA-19-5959 TCGA-19-A6J5 TCGA-26-1438 TCGA-26-1439 
       12.10         1.78        16.80        28.54        10.03        13.87 
TCGA-26-1440 TCGA-26-1443 TCGA-26-1799 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 
        9.73         7.13         9.37        14.86         5.49         8.88 
TCGA-26-5139 TCGA-26-6174 TCGA-26-A7UX TCGA-27-1831 TCGA-27-1833 TCGA-27-1836 
        1.58         2.33        19.33        16.60        24.23        30.05 
TCGA-27-1837 TCGA-27-2518 TCGA-27-2524 TCGA-27-2526 TCGA-27-2528 TCGA-28-1747 
       14.04        24.76         7.59         2.86        15.78         2.53 
TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1753 TCGA-28-1755 TCGA-28-1757 
        9.21         8.35         7.63         1.22         1.55         0.13 
TCGA-28-2502 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5209 TCGA-28-5211 
        0.66         7.30         5.26        14.93        14.53        11.77 
TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 
       11.01        13.64         5.16        22.68        12.76         5.42 
TCGA-32-1977 TCGA-32-1979 TCGA-32-1982 TCGA-32-1987 TCGA-32-1991 TCGA-32-2494 
        0.10        19.50         4.67        14.86        16.93        20.78 
TCGA-32-2495 TCGA-32-2616 TCGA-32-2638 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 
       15.02         7.36        25.18         3.72        12.59        19.86 
TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-3392 TCGA-41-3393 TCGA-41-5651 
       10.85        19.23         0.85         0.99         4.44        15.12 
TCGA-4W-AA9T TCGA-74-6573 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 TCGA-76-4928 
       14.76         3.45         4.34        14.33         7.50         3.09 
TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6282 TCGA-76-6286 
       10.78        16.70         3.29         2.70        17.06        20.98 
TCGA-76-6656 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 
        4.83         0.23         9.27         7.73         7.79         1.61 
TCGA-81-5911 TCGA-RR-A6KA TCGA-RR-A6KC TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 
       17.72         6.28        20.55         4.70         7.69        43.89 
TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-6188 
       10.62        64.64         0.10        21.01         9.96        23.84 
TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 
       17.95        12.43         8.48         7.56         8.02         7.40 
TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5278 
        6.61       122.73        75.25        47.93        72.92        50.17 
TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XC 
       44.52        36.56        78.28        46.42        18.84        46.72 
TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64P 
       39.78        37.45        33.57        72.95        31.63        30.12 
TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W 
        5.98        31.40        27.45        27.81        29.23        14.40 
TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75P TCGA-DH-5140 
       18.51        12.10        11.24        17.88        16.18        19.96 
TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A66B TCGA-DH-A66D 
       31.82        30.31        14.40         8.02        42.05        27.81 
TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU 
       17.19        17.19        54.25        13.12        13.38         3.45 
TCGA-DH-A7UV TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 
       18.61        14.56        17.46         8.45         6.81       182.33 
TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 
       18.94        17.49        15.16       211.17        52.11        22.42 
TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6403 
       49.02        75.16        46.06         1.22        87.45        11.64 
TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-7006 
       19.89        16.83        94.52       114.08         7.96        11.47 
TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7014 
      138.28        14.99       105.21         6.54         8.84       117.40 
TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7299 
       90.77        30.67        26.30         7.96        94.32        44.02 
TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7309 TCGA-DU-8162 
       62.01        25.91        60.30        23.31         2.76        14.60 
TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8166 TCGA-DU-8168 TCGA-DU-A5TR TCGA-DU-A5TS 
       20.68        21.40        16.96        14.17        12.59        15.12 
TCGA-DU-A5TW TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 
        5.65         8.65         2.70        77.98         7.23         5.98 
TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB 
        7.13        21.30        17.98       124.50        77.88        42.31 
TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5305 
       23.51         7.50        44.42         0.56        50.14        79.99 
TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-A7YO TCGA-E1-A7YV 
       57.93       134.27        78.21        95.57        75.02        32.45 
TCGA-E1-A7YW TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 
       36.82        32.35        14.33         0.23         0.20        47.77 
TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 
       25.48        34.36        36.82        18.77        14.93        24.99 
TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7638 TCGA-FG-7641 
       23.97        18.44        15.35        17.88        22.55        20.61 
TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 
       12.95        13.68        14.24        16.01        20.09        14.96 
TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX 
       22.52        32.61        38.27        10.72        18.38        18.71 
TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y 
       14.76        17.82        15.02        16.44        22.26        28.54 
TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q 
       10.78        36.66        48.69        20.45        13.58         5.72 
TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 
       27.52         0.10         6.67        11.54        40.11         0.13 
TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7478 
        0.03        16.54         3.75        17.42         6.54         6.38 
TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 
       40.34        75.19        95.93       106.95       172.77         4.01 
TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 
        5.03        29.85        23.18       122.47         4.57        17.29 
TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7616 TCGA-HT-7620 
        3.16        22.06        45.99        56.09         0.23        14.27 
TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7687 
        0.16        16.24         0.76        44.68         6.05         0.10 
TCGA-HT-7689 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 
       14.96         0.10         2.96        17.52         6.90        14.53 
TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7873 
       39.48        19.23        39.09         0.23        50.63        23.61 
TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 
       37.15         0.33         0.13         3.68         5.33        35.47 
TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 
        3.72        11.28        31.43         1.64        16.24         9.40 
TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 
       63.55         0.10        37.87        33.01        12.23         6.25 
TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 
        0.10         0.46         2.50         5.56        13.78         0.23 
TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV 
       29.59        34.19        28.27        15.72         0.23        26.04 
TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC 
        0.13        20.22         0.07        27.35         0.10         5.33 
TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A619 TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J 
       16.93         1.81        21.40        17.65         2.43        10.52 
TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 
       15.35        11.05         0.10        29.92        19.89         8.32 
TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7493 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 
       19.23        40.18        35.90         4.31        21.70        21.60 
TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 
       19.59        17.82        20.35        20.81        20.71        19.00 
TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX 
       42.77        14.40        14.40         0.23         6.71         1.64 
TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 
        2.37         2.30         4.11         5.88         7.63         0.76 
TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 
       10.42        13.25        11.64         0.20         9.01        13.61 
TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CU 
       15.16         2.53        12.62        15.85        14.04        14.83 
TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 
       14.53        13.61        12.23         2.20         9.17        10.29 
TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC 
       14.53        16.34        16.73         1.91        16.50         5.03 
TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M 
       11.08        12.99        88.83        94.03        32.65        59.38 
TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 
       30.87         5.46        28.08         2.07        19.59        30.67 
TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ 
       87.12        18.77        37.84        34.49        31.33        28.70 
TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 
       22.95        17.62        23.64        32.61        16.08        98.24 
TCGA-S9-A6U9 TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH 
       95.93       106.39        69.50        72.59        80.12        32.45 
TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP 
       84.99        31.10        19.86        15.91        18.61        15.16 
TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J1 
       14.07        36.13         7.92        23.51         7.13         8.19 
TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ 
        2.04        17.03        15.06        13.12        28.37        13.02 
TCGA-S9-A7R1 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R8 TCGA-TM-A7C3 TCGA-TM-A7C4 
      169.84        99.06        30.05        31.59        49.45        48.33 
TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84H 
       49.32        34.78        48.39        16.18        59.05        30.44 
TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q 
       28.08        24.16        40.83        24.79        33.24        25.38 
TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RH TCGA-VM-A8C8 TCGA-VM-A8C9 
       18.61        14.93        23.80        15.98        43.04        30.08 
TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CE TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M 
       13.51         0.10        35.93        23.47        37.05        16.01 
TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WY-A858 TCGA-WY-A85A TCGA-WY-A85B 
       23.21         8.05        51.06        43.96        43.40        45.80 
TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       46.88        37.71        20.81 

  DEL PEAK 45(22Q13.32) MUTATED DEL PEAK 45(22Q13.32) WILD-TYPE 
                           0.10                            0.03 
  DEL PEAK 45(22Q13.32) MUTATED DEL PEAK 45(22Q13.32) WILD-TYPE 
                         156.23                          211.17 
  DEL PEAK 45(22Q13.32) MUTATED DEL PEAK 45(22Q13.32) WILD-TYPE 
                          14.32                           14.93 
[1] "0.1 - 156.2 (14.3)" "0.0 - 211.2 (14.9)"
[1] "hr=" "1.7"
D77V2, continuous
D77V3, binary
                                 cls
clus                                0   1
  DEL PEAK 45(22Q13.32) MUTATED   212  68
  DEL PEAK 45(22Q13.32) WILD-TYPE 358 404
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 45(22Q13.32) MUTATED    212   68
  DEL PEAK 45(22Q13.32) WILD-TYPE  358  404
                        clus
vv                       DEL PEAK 45(22Q13.32) MUTATED
  BRAIN                                            212
  CENTRAL NERVOUS SYSTEM                            68
                        clus
vv                       DEL PEAK 45(22Q13.32) WILD-TYPE
  BRAIN                                              358
  CENTRAL NERVOUS SYSTEM                             404
[1] 2 2
[1] FALSE
D77V4, binary
                                 cls
clus                                0   1
  DEL PEAK 45(22Q13.32) MUTATED   111 169
  DEL PEAK 45(22Q13.32) WILD-TYPE 319 443
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 45(22Q13.32) MUTATED    111  169
  DEL PEAK 45(22Q13.32) WILD-TYPE  319  443
        clus
vv       DEL PEAK 45(22Q13.32) MUTATED DEL PEAK 45(22Q13.32) WILD-TYPE
  FEMALE                           111                             319
  MALE                             169                             443
[1] 2 2
[1] FALSE
D77V5, continuous
                                 vv
clus                              ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  DEL PEAK 45(22Q13.32) MUTATED            38                            10
  DEL PEAK 45(22Q13.32) WILD-TYPE         138                            17
                                 vv
clus                              OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  DEL PEAK 45(22Q13.32) MUTATED                 14                16
  DEL PEAK 45(22Q13.32) WILD-TYPE              104               162
                                 vv
clus                              TREATED PRIMARY GBM
  DEL PEAK 45(22Q13.32) MUTATED                     6
  DEL PEAK 45(22Q13.32) WILD-TYPE                  12
                                 vv
clus                              UNTREATED PRIMARY (DE NOVO) GBM
  DEL PEAK 45(22Q13.32) MUTATED                               196
  DEL PEAK 45(22Q13.32) WILD-TYPE                             329
D77V6, multiclass
                                 clus
vv                                DEL PEAK 45(22Q13.32) MUTATED
  ASTROCYTOMA                                                38
  GLIOBLASTOMA MULTIFORME (GBM)                              10
  OLIGOASTROCYTOMA                                           14
  OLIGODENDROGLIOMA                                          16
  TREATED PRIMARY GBM                                         6
  UNTREATED PRIMARY (DE NOVO) GBM                           196
                                 clus
vv                                DEL PEAK 45(22Q13.32) WILD-TYPE
  ASTROCYTOMA                                                 138
  GLIOBLASTOMA MULTIFORME (GBM)                                17
  OLIGOASTROCYTOMA                                            104
  OLIGODENDROGLIOMA                                           162
  TREATED PRIMARY GBM                                          12
  UNTREATED PRIMARY (DE NOVO) GBM                             329
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D77V7, binary
                                 cls
clus                                0   1
  DEL PEAK 45(22Q13.32) MUTATED   155 125
  DEL PEAK 45(22Q13.32) WILD-TYPE 319 443
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 45(22Q13.32) MUTATED    155  125
  DEL PEAK 45(22Q13.32) WILD-TYPE  319  443
     clus
vv    DEL PEAK 45(22Q13.32) MUTATED DEL PEAK 45(22Q13.32) WILD-TYPE
  NO                            155                             319
  YES                           125                             443
[1] 2 2
[1] FALSE
                                 vv
clus                              AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 45(22Q13.32) MUTATED                                  1     6
  DEL PEAK 45(22Q13.32) WILD-TYPE                                0    15
                                 vv
clus                              BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 45(22Q13.32) MUTATED                          14   250
  DEL PEAK 45(22Q13.32) WILD-TYPE                        50   672
D77V8, multiclass
                                  clus
vv                                 DEL PEAK 45(22Q13.32) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                             1
  ASIAN                                                        6
  BLACK OR AFRICAN AMERICAN                                   14
  WHITE                                                      250
                                  clus
vv                                 DEL PEAK 45(22Q13.32) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                               0
  ASIAN                                                         15
  BLACK OR AFRICAN AMERICAN                                     50
  WHITE                                                        672
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D77V9, binary
                                 cls
clus                                0   1
  DEL PEAK 45(22Q13.32) MUTATED     6 240
  DEL PEAK 45(22Q13.32) WILD-TYPE  24 651
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 45(22Q13.32) MUTATED      6  240
  DEL PEAK 45(22Q13.32) WILD-TYPE   24  651
                        clus
vv                       DEL PEAK 45(22Q13.32) MUTATED
  HISPANIC OR LATINO                                 6
  NOT HISPANIC OR LATINO                           240
                        clus
vv                       DEL PEAK 45(22Q13.32) WILD-TYPE
  HISPANIC OR LATINO                                  24
  NOT HISPANIC OR LATINO                             651
[1] 2 2
[1] FALSE

Clustering(78) Variable = DEL PEAK 46(XP22.2) MUTATION ANALYSIS
D78V1, survival
                               sevent
clus2                             0   1
  DEL PEAK 46(XP22.2) MUTATED    92 121
  DEL PEAK 46(XP22.2) WILD-TYPE 388 438
  DEL PEAK 46(XP22.2) MUTATED DEL PEAK 46(XP22.2) WILD-TYPE 
                          213                           826 
  DEL PEAK 46(XP22.2) MUTATED DEL PEAK 46(XP22.2) WILD-TYPE 
                          121                           438 
$`DEL PEAK 46(XP22.2) MUTATED`
TCGA-02-0007 TCGA-02-0010 TCGA-02-0011 TCGA-02-0026 TCGA-02-0039 TCGA-02-0048 
       23.18        35.41        20.71        24.59        10.52         3.22 
TCGA-02-0058 TCGA-02-0099 TCGA-02-0111 TCGA-02-0258 TCGA-02-0330 TCGA-02-0339 
        8.35         3.48        23.18        16.54        15.91        12.39 
TCGA-02-0422 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-2466 TCGA-02-2483 
       14.50        47.11        11.34         9.27        16.80        15.32 
TCGA-06-0138 TCGA-06-0152 TCGA-06-0158 TCGA-06-0171 TCGA-06-0175 TCGA-06-0184 
       24.23        12.33        10.82        13.12         4.04        69.90 
TCGA-06-0185 TCGA-06-0187 TCGA-06-0214 TCGA-06-0219 TCGA-06-0221 TCGA-06-0743 
       73.84        27.22        15.02         0.72        19.82        26.40 
TCGA-06-1800 TCGA-06-2558 TCGA-06-2561 TCGA-06-2570 TCGA-06-5408 TCGA-06-5416 
       26.79        12.49        17.65        31.50        11.74         6.71 
TCGA-06-5418 TCGA-06-5859 TCGA-06-6693 TCGA-06-A5U0 TCGA-06-A6S1 TCGA-06-A7TL 
        2.73         4.57       120.56         4.70         2.56         5.42 
TCGA-08-0245 TCGA-08-0348 TCGA-08-0354 TCGA-08-0389 TCGA-08-0392 TCGA-08-0512 
       37.84        12.16        17.95        15.35         0.72        42.15 
TCGA-08-0517 TCGA-08-0520 TCGA-08-0525 TCGA-12-0615 TCGA-12-0818 TCGA-12-0821 
       58.68        10.75        15.98        15.35        91.76        10.62 
TCGA-12-0827 TCGA-12-1091 TCGA-12-1093 TCGA-12-3644 TCGA-12-3646 TCGA-12-3651 
       38.76        33.21        15.98        59.77        44.02        12.69 
TCGA-12-3652 TCGA-12-5295 TCGA-14-0736 TCGA-14-0740 TCGA-14-0783 TCGA-14-0787 
       34.92        14.93        15.12        11.97         6.21         2.24 
TCGA-14-0862 TCGA-14-0865 TCGA-14-0871 TCGA-14-1453 TCGA-14-1821 TCGA-14-3477 
        2.89        16.50        28.93         1.15        17.79         3.78 
TCGA-15-0742 TCGA-15-1444 TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 TCGA-19-0964 
       13.78        50.53        16.37         4.31        29.03         3.39 
TCGA-19-1388 TCGA-19-1390 TCGA-19-1392 TCGA-19-1787 TCGA-19-2619 TCGA-19-2621 
       12.95        25.38         3.65        12.66         9.67         1.08 
TCGA-19-2623 TCGA-19-2625 TCGA-19-2629 TCGA-19-5956 TCGA-19-5960 TCGA-26-1439 
        7.53         4.08        24.23        22.49        14.96        13.87 
TCGA-26-5133 TCGA-27-1830 TCGA-27-2521 TCGA-27-2524 TCGA-28-1750 TCGA-28-2514 
       14.86         5.06        10.39         7.59         8.35         5.26 
TCGA-28-5204 TCGA-28-5220 TCGA-32-1978 TCGA-32-2491 TCGA-32-2494 TCGA-32-2615 
       14.93        12.76        15.85        12.23        20.78        15.95 
TCGA-32-2634 TCGA-32-4208 TCGA-32-4210 TCGA-32-4213 TCGA-32-4719 TCGA-41-2572 
       22.78        21.14         3.72        19.86        10.85        13.35 
TCGA-41-2575 TCGA-41-3392 TCGA-74-6575 TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 
        9.53         0.99        20.91         3.65         9.17         2.53 
TCGA-76-4935 TCGA-76-6285 TCGA-OX-A56R TCGA-CS-4938 TCGA-CS-6666 TCGA-DB-5275 
       10.78         8.35         5.92         4.70         8.48        47.93 
TCGA-DB-5279 TCGA-DB-5281 TCGA-DB-A4XA TCGA-DB-A4XH TCGA-DB-A64W TCGA-DH-5140 
       44.52        78.28        18.84        31.63        14.40        19.96 
TCGA-DH-A7UU TCGA-DU-5847 TCGA-DU-5871 TCGA-DU-6401 TCGA-DU-6406 TCGA-DU-6407 
        3.45        18.02        18.94        87.45        16.83        94.52 
TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7018 
        7.96         7.73        11.47        62.96       156.23        30.67 
TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7302 TCGA-DU-8158 TCGA-DU-8168 TCGA-DU-A5TS 
       94.32        18.94        60.30         5.10        14.17        15.12 
TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A6S8 TCGA-DU-A76R TCGA-DU-A7T6 TCGA-E1-5305 
        3.65         5.65         5.98        21.30        17.98        79.99 
TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5322 TCGA-E1-A7YV TCGA-EZ-7264 TCGA-F6-A8O3 
       57.93       134.27       130.78        32.45        14.33         0.23 
TCGA-FG-5964 TCGA-FG-7636 TCGA-FG-A4MY TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A713 
       34.36        17.88        23.70        15.02        16.44        20.45 
TCGA-HT-7469 TCGA-HT-7471 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7609 TCGA-HT-7616 
       11.54         0.13         6.54        24.26        45.99         0.23 
TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7692 TCGA-HT-7855 TCGA-HT-7857 TCGA-HT-7902 
       14.96         0.10         2.96        19.23         0.23        31.43 
TCGA-HT-8013 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A5R7 TCGA-HT-A618 TCGA-HT-A61B 
       63.55        28.27        15.72        20.22        16.83        17.52 
TCGA-HT-A74O TCGA-HW-7491 TCGA-HW-8320 TCGA-IK-7675 TCGA-KT-A74X TCGA-P5-A5EZ 
        0.10        40.18        21.60        19.00        14.40         2.30 
TCGA-P5-A5F2 TCGA-P5-A5F6 TCGA-P5-A72Z TCGA-QH-A65S TCGA-QH-A65Z TCGA-QH-A6X4 
        7.63         1.28        11.64         2.53        14.04        14.53 
TCGA-QH-A6X8 TCGA-RY-A83Z TCGA-S9-A6TS TCGA-S9-A6TV TCGA-S9-A6U1 TCGA-S9-A6WP 
       16.73         9.90        62.17        18.77        17.62        15.16 
TCGA-S9-A7IS TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C5 
        7.92         7.13        20.02        18.71        11.97        49.32 
TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84Q TCGA-TQ-A7RW TCGA-VM-A8CD TCGA-VV-A829 
       30.44        28.08        25.38        26.99         7.89        37.05 
TCGA-VV-A86M TCGA-WY-A858 TCGA-WY-A85B 
       16.01        43.96        45.80 

$`DEL PEAK 46(XP22.2) WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0009 TCGA-02-0014 TCGA-02-0015 
       11.77         4.73        18.35        10.59        82.59        20.61 
TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 TCGA-02-0025 TCGA-02-0027 
       87.06        77.65        20.12        53.10        42.74        12.16 
TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0043 
       90.58         2.83        14.14         3.62        10.72        18.31 
TCGA-02-0046 TCGA-02-0047 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 
        6.87        14.73        15.09        12.59         6.54         2.50 
TCGA-02-0057 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 
       19.86         9.57         6.02        19.73        26.43        28.70 
TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 
       25.05         5.49        10.19        20.84        27.25        89.72 
TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 
       22.72        12.62        51.32         8.81        57.76        16.96 
TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 TCGA-02-0113 TCGA-02-0114 
       27.02        65.00        11.67        17.65        92.65        99.98 
TCGA-02-0115 TCGA-02-0116 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 
       15.65        48.95        16.93        17.72        10.75        14.47 
TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 
        3.98        13.87        14.20        15.95        12.23         9.90 
TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 
        7.73        10.62         7.33        25.71         4.37        25.12 
TCGA-02-0338 TCGA-02-0430 TCGA-02-0451 TCGA-02-0456 TCGA-02-2470 TCGA-02-2485 
       10.59        10.55        16.21         3.35        12.92        15.45 
TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 
       20.32         2.70         6.15        20.38        47.61         6.94 
TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 
        3.98        22.72        33.67        12.95        25.35        14.30 
TCGA-06-0137 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 
       26.70        11.90         0.20        10.29         2.20        11.74 
TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 
        2.33        20.09        17.79        10.09         8.61        19.46 
TCGA-06-0151 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0159 TCGA-06-0160 
       46.59        13.94        10.45         3.19         9.44        11.80 
TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 
        3.42        56.91        10.65         5.85        19.66         3.29 
TCGA-06-0173 TCGA-06-0174 TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 
        4.47         3.22        91.00         4.18        88.14        20.25 
TCGA-06-0182 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 
        3.65        44.58        15.42        10.42        38.96         4.67 
TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 
        7.40         5.56         0.39         7.66         8.42         7.63 
TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0216 TCGA-06-0237 TCGA-06-0238 
        7.40        11.84         0.53        24.16        13.64        13.32 
TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 
       20.42        48.69        10.82         9.01         0.26        72.36 
TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 
        4.70         9.57         3.16        35.11        12.62         5.75 
TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0744 
        5.75         9.80         2.10        23.57        14.20        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1084 TCGA-06-1086 TCGA-06-1087 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 
       23.93         6.84         4.04        11.84        15.32        13.61 
TCGA-06-1805 TCGA-06-1806 TCGA-06-2557 TCGA-06-2559 TCGA-06-2562 TCGA-06-2563 
       33.90        15.32         1.08         4.93        12.56        30.64 
TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 TCGA-06-5410 
        5.95        16.64         5.98         4.37         0.43         3.55 
TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5856 
        8.35         4.54         8.81         8.98         8.55         3.75 
TCGA-06-5858 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6694 
        6.15         5.23         7.79         5.39         1.48         7.36 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
        8.32        12.85         4.77         1.55         4.77         4.96 
TCGA-06-A5U1 TCGA-06-A6S0 TCGA-06-A7TK TCGA-08-0244 TCGA-08-0246 TCGA-08-0344 
        1.87         3.12         5.39        22.68         4.18       115.86 
TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 
        1.74         8.42        25.71         9.80        29.23        65.33 
TCGA-08-0352 TCGA-08-0353 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 
        1.28         8.42        24.56        31.10        37.58        22.29 
TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 TCGA-08-0390 TCGA-08-0509 
        3.39        12.23        14.93        18.02        13.97        12.56 
TCGA-08-0510 TCGA-08-0514 TCGA-08-0516 TCGA-08-0518 TCGA-08-0521 TCGA-08-0524 
        4.27        11.08        19.59        19.33         4.80         7.27 
TCGA-08-0529 TCGA-08-0531 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 
       18.41         7.56        14.73        12.99        34.92        10.45 
TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 
        7.59        94.78         0.10        38.17        25.97        26.66 
TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 
       12.13         3.65        20.38        28.41        15.06        53.85 
TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0819 
       43.23         7.63         9.73        14.93        14.86        24.79 
TCGA-12-0820 TCGA-12-0822 TCGA-12-0826 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 
       18.48        23.51        27.78         8.94        20.58       127.59 
TCGA-12-1089 TCGA-12-1090 TCGA-12-1092 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 
        5.82         7.59        21.73        12.23        15.85         9.11 
TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 
       14.53         3.98         4.14        15.65        25.68        14.73 
TCGA-12-1602 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3653 TCGA-12-5299 
        6.77        26.93        15.22        10.95        14.53         3.22 
TCGA-12-5301 TCGA-14-0781 TCGA-14-0786 TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 
        2.04         0.95        23.05        11.24        13.78         3.25 
TCGA-14-0813 TCGA-14-0817 TCGA-14-0866 TCGA-14-0867 TCGA-14-1034 TCGA-14-1037 
        1.35         5.39        26.33         2.04        15.95        19.30 
TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 
        0.79         1.38         1.12         3.75        32.05        58.78 
TCGA-14-1451 TCGA-14-1452 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 
       23.11         7.10        30.18         0.92        40.96         6.67 
TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 
       12.43         0.99         1.97        17.85         7.63         5.88 
TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-4157 TCGA-15-1446 TCGA-15-1447 
        7.17        17.49         7.96         3.42        19.10        53.19 
TCGA-15-1449 TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 TCGA-16-1047 TCGA-16-1055 
       13.28         3.91        17.59        26.07         4.57        10.29 
TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 
       14.01         9.14        21.24        13.97         6.41        11.77 
TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 TCGA-19-1385 TCGA-19-1386 
       21.90         8.61         0.66        14.27        10.75         9.07 
TCGA-19-1387 TCGA-19-1389 TCGA-19-1786 TCGA-19-1789 TCGA-19-1791 TCGA-19-2620 
        5.95         4.64         7.17         3.25         0.13         4.87 
TCGA-19-2624 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 
        0.16         7.00         7.04         6.64        17.19         8.02 
TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 
       18.90         4.73        12.10         1.78        14.07        16.80 
TCGA-19-A60I TCGA-19-A6J4 TCGA-19-A6J5 TCGA-26-1438 TCGA-26-1440 TCGA-26-1442 
       17.79         3.98        28.54        10.03         9.73        31.33 
TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 
        7.13         9.37         9.40         5.49         8.88        18.97 
TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-26-A7UX TCGA-27-1831 TCGA-27-1832 
        1.58         7.92         2.33        19.33        16.60         9.86 
TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 
       24.23        40.54        21.30        30.05        14.04        11.51 
TCGA-27-2518 TCGA-27-2519 TCGA-27-2523 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 
       24.76        10.39        16.08         2.86        14.40        15.78 
TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 
        0.20         2.53         9.21         7.63         8.48         1.22 
TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 
        1.55         2.83         0.13         0.66         6.74         4.77 
TCGA-28-2513 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 
        7.30        11.28        17.88        14.53        11.77        31.27 
TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-6450 
       23.44        11.01        13.64         5.16        22.68         5.42 
TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 
       15.39        21.07         0.49         0.10        19.50         1.18 
TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2495 TCGA-32-2616 
        4.67        12.69        14.86        16.93        15.02         7.36 
TCGA-32-2632 TCGA-32-2638 TCGA-32-4211 TCGA-32-5222 TCGA-41-2571 TCGA-41-2573 
        8.84        25.18        12.59        19.23         0.85         8.94 
TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-4W-AA9S 
        4.44        11.84         0.20        15.12        12.46         4.14 
TCGA-4W-AA9T TCGA-74-6573 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 
       14.76         3.45         4.34        14.33         8.22         7.50 
TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 
        4.80         4.54         3.09        16.70         3.29         2.70 
TCGA-76-6280 TCGA-76-6282 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 
       11.38        17.06        20.98         4.83         5.03         0.23 
TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        9.27         7.73         7.79         1.61        17.72        26.30 
TCGA-RR-A6KA TCGA-RR-A6KC TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 
        6.28        20.55         7.69        43.89        18.15        10.62 
TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 
       64.64        40.18         0.10        21.01         9.96         6.38 
TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6667 TCGA-CS-6668 
       17.69        23.84        17.95        12.43         7.56         8.02 
TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5276 
        7.40         6.61       122.73        81.96        75.25        72.92 
TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5280 TCGA-DB-A4X9 TCGA-DB-A4XB TCGA-DB-A4XC 
       50.86        50.17        36.56        46.42        30.21        46.72 
TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A64L TCGA-DB-A64O 
       39.78        37.45        33.57        72.95        24.20        25.48 
TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V 
       30.12         5.98        31.40        27.45        27.81        29.23 
TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P 
       18.51        12.10        11.24        17.88        30.74        16.18 
TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B 
       31.82        30.31        14.40         8.02        30.21        42.05 
TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT 
       27.81        17.19        17.19        54.25        13.12        13.38 
TCGA-DH-A7UV TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 
       18.61        14.56        17.46         6.74        13.38         8.45 
TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 
        6.81       182.33        17.49        15.16       211.17        52.11 
TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 
       22.42        49.02        75.16        46.06        65.75         1.22 
TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6408 TCGA-DU-7009 
        7.04        11.64       133.74        19.89       114.08       138.28 
TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7014 TCGA-DU-7015 
       14.99       105.21         6.54         8.84       117.40        90.77 
TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 
       26.30        10.36         7.96        44.02        62.01        25.91 
TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 
       23.31        41.98         2.76        23.74        14.60        20.68 
TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-A5TP TCGA-DU-A5TR 
       21.40        19.13        16.96        15.48        14.24        12.59 
TCGA-DU-A5TT TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 
        4.96        12.20         8.65         2.70        77.98         7.23 
TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB 
       11.41        26.76         7.13       124.50        77.88        42.31 
TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 
       23.51         7.50        44.42         0.56        50.14        67.46 
TCGA-E1-5304 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-A7YO TCGA-E1-A7YW TCGA-E1-A7Z6 
       41.13        78.21        95.57        75.02        36.82        32.35 
TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 
        0.20        47.77        25.48        36.82        18.77        14.93 
TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7638 TCGA-FG-7641 
       24.99        23.97        18.44        15.35        22.55        20.61 
TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 
       20.09        12.95        13.68        14.24        16.01        20.09 
TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW 
       14.96        22.52        32.61        38.27        10.72        18.38 
TCGA-FG-A4MX TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6J3 TCGA-FG-A70Y 
       18.71        14.76        17.82        16.41        22.26        28.54 
TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 
       10.78        36.66        48.69        13.58         5.72        27.52 
TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7470 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 
        0.10         6.67        40.11         0.03        16.54         3.75 
TCGA-HT-7475 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 
       17.42         6.38        40.34        75.19        95.93       106.95 
TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 
      172.77         4.01         5.03        29.85        23.18       122.47 
TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7610 TCGA-HT-7611 
        4.57        17.29         3.16        22.06        56.09        57.60 
TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 
       14.27         0.16        16.24         0.76        44.68         6.05 
TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7691 TCGA-HT-7693 TCGA-HT-7694 
       42.74         0.10        31.69         0.10        17.52         6.90 
TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7856 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 
       14.53        39.48        39.09        50.63         0.49        23.61 
TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 
       37.15         0.33         0.13         3.68         5.33        35.47 
TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8015 
        3.72        11.28         1.64        16.24         9.40         0.10 
TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 
       37.87        33.01        12.23         6.25         0.10         0.46 
TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 
        2.50         5.56        13.78         0.23        29.59        34.19 
TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB 
        0.23        26.04         0.13         0.07        27.35         0.10 
TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A619 
        5.33         2.70        16.93         1.81        16.14        21.40 
TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HW-7486 
       17.65         2.43        10.52        15.35        11.05        29.92 
TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7493 TCGA-HW-7495 TCGA-HW-8319 
       19.89         8.32        19.23        35.90         4.31        21.70 
TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM 
       19.59        17.82        20.35        12.76        20.81        20.71 
TCGA-IK-8125 TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY 
       42.77        14.40         0.23         6.71         1.64         2.37 
TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F4 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X 
        4.11         5.88         0.76         0.16        10.42        13.25 
TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-QH-A65R TCGA-QH-A65V TCGA-QH-A65X 
        0.20         9.01        13.61        15.16        12.62        15.85 
TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY 
       19.33        14.83        14.53        13.61        12.23         2.20 
TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X5 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC 
        9.17        10.29        16.34         1.91        16.50         5.03 
TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M 
       11.08        12.99        88.83        94.03        32.65        59.38 
TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 
       30.87         5.46        28.08         2.07        19.59        30.67 
TCGA-S9-A6TU TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 
       87.12        37.84        34.49        31.33        28.70        22.95 
TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA 
       23.64        32.61        16.08        98.24        95.93         5.85 
TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI 
      106.39        69.50        72.59        80.12        32.45        84.99 
TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WQ TCGA-S9-A7IQ 
       31.10        19.86        15.91        18.61        14.07        36.13 
TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW 
       22.32        23.51         8.19         2.04        17.03        15.06 
TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 
       13.12        28.37        13.02       169.84        10.39        99.06 
TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7CA 
       30.05        98.63        31.59        49.45        48.33        34.78 
TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84J 
       48.39        24.92        16.18        59.05        40.64        24.16 
TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T 
       40.83        24.79        33.24        18.61        14.93        23.80 
TCGA-TQ-A7RH TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CE 
       15.98        43.04        30.08        13.51         0.10        35.93 
TCGA-VM-A8CH TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A859 
       23.47        23.21         8.05        51.06        13.32        39.88 
TCGA-WY-A85A TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       43.40        46.88        37.71        20.81 

  DEL PEAK 46(XP22.2) MUTATED DEL PEAK 46(XP22.2) WILD-TYPE 
                         0.10                          0.03 
  DEL PEAK 46(XP22.2) MUTATED DEL PEAK 46(XP22.2) WILD-TYPE 
                       156.23                        211.17 
  DEL PEAK 46(XP22.2) MUTATED DEL PEAK 46(XP22.2) WILD-TYPE 
                        15.32                         14.53 
[1] "0.1 - 156.2 (15.3)" "0.0 - 211.2 (14.5)"
[1] "hr=" "1"  
D78V2, continuous
D78V3, binary
                               cls
clus                              0   1
  DEL PEAK 46(XP22.2) MUTATED   117  97
  DEL PEAK 46(XP22.2) WILD-TYPE 453 375
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 46(XP22.2) MUTATED    117   97
  DEL PEAK 46(XP22.2) WILD-TYPE  453  375
                        clus
vv                       DEL PEAK 46(XP22.2) MUTATED
  BRAIN                                          117
  CENTRAL NERVOUS SYSTEM                          97
                        clus
vv                       DEL PEAK 46(XP22.2) WILD-TYPE
  BRAIN                                            453
  CENTRAL NERVOUS SYSTEM                           375
[1] 2 2
[1] FALSE
D78V4, binary
                               cls
clus                              0   1
  DEL PEAK 46(XP22.2) MUTATED    95 119
  DEL PEAK 46(XP22.2) WILD-TYPE 335 493
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 46(XP22.2) MUTATED     95  119
  DEL PEAK 46(XP22.2) WILD-TYPE  335  493
        clus
vv       DEL PEAK 46(XP22.2) MUTATED DEL PEAK 46(XP22.2) WILD-TYPE
  FEMALE                          95                           335
  MALE                           119                           493
[1] 2 2
[1] FALSE
D78V5, continuous
                               vv
clus                            ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  DEL PEAK 46(XP22.2) MUTATED            40                             5
  DEL PEAK 46(XP22.2) WILD-TYPE         136                            22
                               vv
clus                            OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  DEL PEAK 46(XP22.2) MUTATED                 26                31
  DEL PEAK 46(XP22.2) WILD-TYPE               92               147
                               vv
clus                            TREATED PRIMARY GBM
  DEL PEAK 46(XP22.2) MUTATED                     4
  DEL PEAK 46(XP22.2) WILD-TYPE                  14
                               vv
clus                            UNTREATED PRIMARY (DE NOVO) GBM
  DEL PEAK 46(XP22.2) MUTATED                               108
  DEL PEAK 46(XP22.2) WILD-TYPE                             417
D78V6, multiclass
                                 clus
vv                                DEL PEAK 46(XP22.2) MUTATED
  ASTROCYTOMA                                              40
  GLIOBLASTOMA MULTIFORME (GBM)                             5
  OLIGOASTROCYTOMA                                         26
  OLIGODENDROGLIOMA                                        31
  TREATED PRIMARY GBM                                       4
  UNTREATED PRIMARY (DE NOVO) GBM                         108
                                 clus
vv                                DEL PEAK 46(XP22.2) WILD-TYPE
  ASTROCYTOMA                                               136
  GLIOBLASTOMA MULTIFORME (GBM)                              22
  OLIGOASTROCYTOMA                                           92
  OLIGODENDROGLIOMA                                         147
  TREATED PRIMARY GBM                                        14
  UNTREATED PRIMARY (DE NOVO) GBM                           417
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D78V7, binary
                               cls
clus                              0   1
  DEL PEAK 46(XP22.2) MUTATED    95 119
  DEL PEAK 46(XP22.2) WILD-TYPE 379 449
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 46(XP22.2) MUTATED     95  119
  DEL PEAK 46(XP22.2) WILD-TYPE  379  449
     clus
vv    DEL PEAK 46(XP22.2) MUTATED DEL PEAK 46(XP22.2) WILD-TYPE
  NO                           95                           379
  YES                         119                           449
[1] 2 2
[1] FALSE
                               vv
clus                            AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 46(XP22.2) MUTATED                                  0     5
  DEL PEAK 46(XP22.2) WILD-TYPE                                1    16
                               vv
clus                            BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 46(XP22.2) MUTATED                          12   191
  DEL PEAK 46(XP22.2) WILD-TYPE                        52   731
D78V8, multiclass
                                  clus
vv                                 DEL PEAK 46(XP22.2) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                           0
  ASIAN                                                      5
  BLACK OR AFRICAN AMERICAN                                 12
  WHITE                                                    191
                                  clus
vv                                 DEL PEAK 46(XP22.2) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                             1
  ASIAN                                                       16
  BLACK OR AFRICAN AMERICAN                                   52
  WHITE                                                      731
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D78V9, binary
                               cls
clus                              0   1
  DEL PEAK 46(XP22.2) MUTATED     7 185
  DEL PEAK 46(XP22.2) WILD-TYPE  23 706
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 46(XP22.2) MUTATED      7  185
  DEL PEAK 46(XP22.2) WILD-TYPE   23  706
                        clus
vv                       DEL PEAK 46(XP22.2) MUTATED
  HISPANIC OR LATINO                               7
  NOT HISPANIC OR LATINO                         185
                        clus
vv                       DEL PEAK 46(XP22.2) WILD-TYPE
  HISPANIC OR LATINO                                23
  NOT HISPANIC OR LATINO                           706
[1] 2 2
[1] FALSE

Clustering(79) Variable = DEL PEAK 47(XQ21.1) MUTATION ANALYSIS
D79V1, survival
                               sevent
clus2                             0   1
  DEL PEAK 47(XQ21.1) MUTATED    69 100
  DEL PEAK 47(XQ21.1) WILD-TYPE 411 459
  DEL PEAK 47(XQ21.1) MUTATED DEL PEAK 47(XQ21.1) WILD-TYPE 
                          169                           870 
  DEL PEAK 47(XQ21.1) MUTATED DEL PEAK 47(XQ21.1) WILD-TYPE 
                          100                           459 
$`DEL PEAK 47(XQ21.1) MUTATED`
TCGA-02-0007 TCGA-02-0011 TCGA-02-0026 TCGA-02-0039 TCGA-02-0048 TCGA-02-0099 
       23.18        20.71        24.59        10.52         3.22         3.48 
TCGA-02-0330 TCGA-02-0339 TCGA-02-2466 TCGA-06-0129 TCGA-06-0138 TCGA-06-0152 
       15.91        12.39        16.80        33.67        24.23        12.33 
TCGA-06-0166 TCGA-06-0171 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0214 
        5.85        13.12        69.90        73.84        27.22        15.02 
TCGA-06-0219 TCGA-06-0646 TCGA-06-1800 TCGA-06-2558 TCGA-06-2570 TCGA-06-5408 
        0.72         5.75        26.79        12.49        31.50        11.74 
TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 TCGA-06-5859 TCGA-06-6693 TCGA-06-A5U0 
        6.71         2.73         3.75         4.57       120.56         4.70 
TCGA-06-A5U1 TCGA-06-A6S1 TCGA-08-0245 TCGA-08-0344 TCGA-08-0348 TCGA-08-0354 
        1.87         2.56        37.84       115.86        12.16        17.95 
TCGA-08-0389 TCGA-08-0392 TCGA-08-0512 TCGA-08-0517 TCGA-08-0520 TCGA-08-0525 
       15.35         0.72        42.15        58.68        10.75        15.98 
TCGA-12-0615 TCGA-12-0821 TCGA-12-0827 TCGA-12-1091 TCGA-12-3644 TCGA-12-3646 
       15.35        10.62        38.76        33.21        59.77        44.02 
TCGA-12-3652 TCGA-12-5295 TCGA-14-0736 TCGA-14-0740 TCGA-14-0787 TCGA-14-0862 
       34.92        14.93        15.12        11.97         2.24         2.89 
TCGA-14-0865 TCGA-14-3477 TCGA-15-0742 TCGA-15-1447 TCGA-16-0861 TCGA-16-1045 
       16.50         3.78        13.78        53.19         4.31        29.03 
TCGA-16-1063 TCGA-19-0964 TCGA-19-1390 TCGA-19-1392 TCGA-19-1786 TCGA-19-2619 
       13.97         3.39        25.38         3.65         7.17         9.67 
TCGA-19-2621 TCGA-19-2623 TCGA-19-2625 TCGA-19-2629 TCGA-19-5947 TCGA-19-5956 
        1.08         7.53         4.08        24.23         6.64        22.49 
TCGA-19-5960 TCGA-26-1439 TCGA-26-5133 TCGA-26-5134 TCGA-27-2519 TCGA-27-2524 
       14.96        13.87        14.86         5.49        10.39         7.59 
TCGA-28-1750 TCGA-28-1756 TCGA-28-2514 TCGA-28-5204 TCGA-28-5220 TCGA-32-1977 
        8.35         2.83         5.26        14.93        12.76         0.10 
TCGA-32-1978 TCGA-32-2494 TCGA-32-2615 TCGA-32-2634 TCGA-32-4208 TCGA-32-4213 
       15.85        20.78        15.95        22.78        21.14        19.86 
TCGA-32-4719 TCGA-41-2572 TCGA-41-2575 TCGA-41-3392 TCGA-74-6573 TCGA-74-6575 
       10.85        13.35         9.53         0.99         3.45        20.91 
TCGA-76-4925 TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 TCGA-76-6285 
        4.80         3.65         9.17         2.53        10.78         8.35 
TCGA-76-6286 TCGA-OX-A56R TCGA-CS-6665 TCGA-CS-6667 TCGA-DB-5275 TCGA-DB-5277 
       20.98         5.92        12.43         7.56        47.93        50.86 
TCGA-DB-5279 TCGA-DB-A4XF TCGA-DB-A4XH TCGA-DB-A64W TCGA-DH-5140 TCGA-DU-5847 
       44.52        33.57        31.63        14.40        19.96        18.02 
TCGA-DU-6404 TCGA-DU-6410 TCGA-DU-7006 TCGA-DU-7008 TCGA-DU-7010 TCGA-DU-7018 
      133.74         7.96        11.47       156.23        14.99        30.67 
TCGA-DU-7294 TCGA-DU-8158 TCGA-DU-8168 TCGA-DU-A6S8 TCGA-DU-A76R TCGA-DU-A7T6 
       94.32         5.10        14.17         5.98        21.30        17.98 
TCGA-E1-5302 TCGA-E1-5311 TCGA-E1-A7YV TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-FG-5964 
       50.14       134.27        32.45        14.33         0.23        34.36 
TCGA-FG-A6IZ TCGA-FG-A6J3 TCGA-HT-7469 TCGA-HT-7471 TCGA-HT-7616 TCGA-HT-7688 
       15.02        22.26        11.54         0.13         0.23        31.69 
TCGA-HT-7690 TCGA-HT-7692 TCGA-HT-A61B TCGA-HW-7491 TCGA-HW-8321 TCGA-IK-7675 
        0.10         2.96        17.52        40.18        19.59        19.00 
TCGA-KT-A74X TCGA-P5-A5F2 TCGA-P5-A5F6 TCGA-P5-A72Z TCGA-QH-A65Z TCGA-QH-A6CX 
       14.40         7.63         1.28        11.64        14.04        12.23 
TCGA-QH-A6X4 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-RY-A83Z TCGA-S9-A6TU TCGA-S9-A6TV 
       14.53        16.73         1.91         9.90        87.12        18.77 
TCGA-S9-A6WP TCGA-S9-A7IS TCGA-S9-A7QW TCGA-S9-A89Z TCGA-TM-A7C5 TCGA-TM-A7CF 
       15.16         7.92        15.06        11.97        49.32        48.39 
TCGA-TM-A84I TCGA-TQ-A7RW TCGA-VM-A8C8 TCGA-VM-A8CD TCGA-VV-A829 TCGA-WH-A86K 
       28.08        26.99        43.04         7.89        37.05        13.32 
TCGA-WY-A859 
       39.88 

$`DEL PEAK 47(XQ21.1) WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0009 TCGA-02-0010 TCGA-02-0014 
       11.77         4.73        18.35        10.59        35.41        82.59 
TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 TCGA-02-0025 
       20.61        87.06        77.65        20.12        53.10        42.74 
TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 
       12.16        90.58         2.83        14.14         3.62        10.72 
TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 
       18.31         6.87        14.73        15.09        12.59         6.54 
TCGA-02-0055 TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 
        2.50        19.86         8.35         9.57         6.02        19.73 
TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 
       26.43        28.70        25.05         5.49        10.19        20.84 
TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 
       27.25        89.72        22.72        12.62        51.32         8.81 
TCGA-02-0087 TCGA-02-0089 TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 
       57.76        16.96        27.02        65.00        11.67        17.65 
TCGA-02-0111 TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 
       23.18        92.65        99.98        15.65        48.95        16.54 
TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 
       16.93        17.72        10.75        14.47         3.98        13.87 
TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 
       14.20        15.95        12.23         9.90         7.73        10.62 
TCGA-02-0326 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0422 
        7.33        25.71         4.37        25.12        10.59        14.50 
TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 
       10.55        47.11        11.34         9.27        16.21         3.35 
TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 
       12.92        15.32        15.45        20.32         2.70         6.15 
TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0130 
       20.38        47.61         6.94         3.98        22.72        12.95 
TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 
       25.35        14.30        26.70        11.90         0.20        10.29 
TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 
        2.20        11.74         2.33        20.09        17.79        10.09 
TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 
        8.61        19.46        46.59        13.94        10.45         3.19 
TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 
       10.82         9.44        11.80         3.42        56.91        10.65 
TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 
       19.66         3.29         4.47         3.22         4.04        91.00 
TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0188 TCGA-06-0189 
        4.18        88.14        20.25         3.65        44.58        15.42 
TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 
       10.42        38.96         4.67         7.40         5.56         0.39 
TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 
        7.66         8.42         7.63         7.40        11.84         0.53 
TCGA-06-0216 TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 
       24.16        19.82        13.64        13.32        20.42        48.69 
TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 TCGA-06-0412 
       10.82         9.01         0.26        72.36         4.70         9.57 
TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 TCGA-06-0648 TCGA-06-0649 
        3.16        35.11        12.62         5.75         9.80         2.10 
TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 
       23.57        14.20        26.40        46.88         7.86         2.70 
TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 
        2.70         0.92        43.46        46.19         5.65         7.17 
TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 
       40.41        16.57        20.78        26.76        23.93         6.84 
TCGA-06-1087 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-1806 
        4.04        11.84        15.32        13.61        33.90        15.32 
TCGA-06-2557 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 
        1.08         4.93        17.65        12.56        30.64         5.95 
TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 TCGA-06-5410 TCGA-06-5411 
       16.64         5.98         4.37         0.43         3.55         8.35 
TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5858 TCGA-06-6388 
        4.54         8.81         8.98         8.55         6.15         5.23 
TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 
        7.79         5.39         1.48         7.36         8.32        12.85 
TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-06-A6S0 TCGA-06-A7TK 
        4.77         1.55         4.77         4.96         3.12         5.39 
TCGA-06-A7TL TCGA-08-0244 TCGA-08-0246 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 
        5.42        22.68         4.18         1.74         8.42        25.71 
TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 TCGA-08-0355 
        9.80        29.23        65.33         1.28         8.42        24.56 
TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 
       31.10        37.58        22.29         3.39        12.23        14.93 
TCGA-08-0386 TCGA-08-0390 TCGA-08-0509 TCGA-08-0510 TCGA-08-0514 TCGA-08-0516 
       18.02        13.97        12.56         4.27        11.08        19.59 
TCGA-08-0518 TCGA-08-0521 TCGA-08-0524 TCGA-08-0529 TCGA-08-0531 TCGA-12-0616 
       19.33         4.80         7.27        18.41         7.56        14.73 
TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 
       12.99        34.92        10.45         7.59        94.78         0.10 
TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 
       38.17        25.97        26.66        12.13         3.65        20.38 
TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 
       28.41        15.06        53.85        43.23         7.63         9.73 
TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0822 
       14.93        14.86        91.76        24.79        18.48        23.51 
TCGA-12-0826 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 
       27.78         8.94        20.58       127.59         5.82         7.59 
TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 
       21.73        15.98        12.23        15.85         9.11        14.53 
TCGA-12-1098 TCGA-12-1099 TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 
        3.98         4.14        15.65        25.68        14.73         6.77 
TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3653 TCGA-12-5299 
       26.93        15.22        10.95        12.69        14.53         3.22 
TCGA-12-5301 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0789 TCGA-14-0790 
        2.04         0.95         6.21        23.05        11.24        13.78 
TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 TCGA-14-0866 TCGA-14-0867 TCGA-14-0871 
        3.25         1.35         5.39        26.33         2.04        28.93 
TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 
       15.95        19.30         0.79         1.38         1.12         3.75 
TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 
       32.05        58.78        23.11         7.10         1.15        30.18 
TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 
        0.92        40.96         6.67        12.43         0.99         1.97 
TCGA-14-1821 TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 
       17.79        17.85         7.63         5.88         7.17        17.49 
TCGA-14-2555 TCGA-14-4157 TCGA-15-1444 TCGA-15-1446 TCGA-15-1449 TCGA-16-0846 
        7.96         3.42        50.53        19.10        13.28         3.91 
TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 
       17.59        26.07        16.37         4.57        10.29        14.01 
TCGA-16-1060 TCGA-16-1062 TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 
        9.14        21.24         6.41        11.77        21.90         8.61 
TCGA-19-0962 TCGA-19-0963 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 
        0.66        14.27        10.75         9.07         5.95        12.95 
TCGA-19-1389 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2620 TCGA-19-2624 
        4.64        12.66         3.25         0.13         4.87         0.16 
TCGA-19-2631 TCGA-19-4065 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 
        7.00         7.04        17.19         8.02        18.90         4.73 
TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 TCGA-19-A60I TCGA-19-A6J4 
       12.10         1.78        14.07        16.80        17.79         3.98 
TCGA-19-A6J5 TCGA-26-1438 TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 
       28.54        10.03         9.73        31.33         7.13         9.37 
TCGA-26-5132 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 
        9.40         8.88        18.97         1.58         7.92         2.33 
TCGA-26-A7UX TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 
       19.33         5.06        16.60         9.86        24.23        40.54 
TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2521 
       21.30        30.05        14.04        11.51        24.76        10.39 
TCGA-27-2523 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 
       16.08         2.86        14.40        15.78         0.20         2.53 
TCGA-28-1749 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1757 
        9.21         7.63         8.48         1.22         1.55         0.13 
TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 TCGA-28-2513 TCGA-28-5207 TCGA-28-5208 
        0.66         6.74         4.77         7.30        11.28        17.88 
TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 
       14.53        11.77        31.27        23.44        11.01        13.64 
TCGA-28-5218 TCGA-28-5219 TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 
        5.16        22.68         5.42        15.39        21.07         0.49 
TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 
       19.50         1.18         4.67        12.69        14.86        16.93 
TCGA-32-2491 TCGA-32-2495 TCGA-32-2616 TCGA-32-2632 TCGA-32-2638 TCGA-32-4210 
       12.23        15.02         7.36         8.84        25.18         3.72 
TCGA-32-4211 TCGA-32-5222 TCGA-41-2571 TCGA-41-2573 TCGA-41-3393 TCGA-41-3915 
       12.59        19.23         0.85         8.94         4.44        11.84 
TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-4W-AA9S TCGA-4W-AA9T TCGA-74-6577 
        0.20        15.12        12.46         4.14        14.76         4.34 
TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4926 TCGA-76-4928 TCGA-76-6191 
       14.33         8.22         7.50         4.54         3.09        16.70 
TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6656 TCGA-76-6657 
        3.29         2.70        11.38        17.06         4.83         5.03 
TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 
        0.23         9.27         7.73         7.79         1.61        17.72 
TCGA-87-5896 TCGA-RR-A6KA TCGA-RR-A6KC TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 
       26.30         6.28        20.55         4.70         7.69        43.89 
TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 
       18.15        10.62        64.64        40.18         0.10        21.01 
TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6666 
        9.96         6.38        17.69        23.84        17.95         8.48 
TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 
        8.02         7.40         6.61       122.73        81.96        75.25 
TCGA-DB-5276 TCGA-DB-5278 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA 
       72.92        50.17        36.56        78.28        46.42        18.84 
TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XG TCGA-DB-A64L 
       30.21        46.72        39.78        37.45        72.95        24.20 
TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U 
       25.48        30.12         5.98        31.40        27.45        27.81 
TCGA-DB-A64V TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O 
       29.23        18.51        12.10        11.24        17.88        30.74 
TCGA-DB-A75P TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 
       16.18        31.82        30.31        14.40         8.02        30.21 
TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US 
       42.05        27.81        17.19        17.19        54.25        13.12 
TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 
       13.38         3.45        18.61        14.56        17.46         6.74 
TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 
       13.38         8.45         6.81       182.33        18.94        17.49 
TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 
       15.16       211.17        52.11        22.42        49.02        75.16 
TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 
       46.06        65.75         1.22        87.45         7.04        11.64 
TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6542 TCGA-DU-7007 
       19.89        16.83        94.52       114.08         7.73        62.96 
TCGA-DU-7009 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7014 TCGA-DU-7015 
      138.28       105.21         6.54         8.84       117.40        90.77 
TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 
       26.30        10.36         7.96        18.94        44.02        62.01 
TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8161 
       25.91        60.30        23.31        41.98         2.76        23.74 
TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 
       14.60        20.68        21.40        19.13        16.96        15.48 
TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW 
       14.24        12.59        15.12         4.96         3.65         5.65 
TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A76K 
       12.20         8.65         2.70        77.98         7.23        11.41 
TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC 
       26.76         7.13       124.50        77.88        42.31        23.51 
TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 
        7.50        44.42         0.56        67.46        41.13        79.99 
TCGA-E1-5307 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YO TCGA-E1-A7YW 
       57.93        78.21        95.57       130.78        75.02        36.82 
TCGA-E1-A7Z6 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5965 TCGA-FG-6688 
       32.35         0.20        47.77        25.48        36.82        18.77 
TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 
       14.93        24.99        23.97        18.44        15.35        17.88 
TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 
       22.55        20.61        20.09        12.95        13.68        14.24 
TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT 
       16.01        20.09        14.96        22.52        32.61        38.27 
TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K 
       10.72        18.38        18.71        23.70        14.76        17.82 
TCGA-FG-A60L TCGA-FG-A6J1 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 
       16.41        16.44        28.54        10.78        36.66        48.69 
TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 
       20.45        13.58         5.72        27.52         0.10         6.67 
TCGA-HT-7470 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 
       40.11         0.03        16.54         3.75        17.42         6.54 
TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 
       24.26         6.38        40.34        75.19        95.93       106.95 
TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 
      172.77         4.01         5.03        29.85        23.18       122.47 
TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 
        4.57        17.29         3.16        22.06        45.99        56.09 
TCGA-HT-7611 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 
       57.60        14.27         0.16        16.24         0.76        44.68 
TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7689 TCGA-HT-7691 TCGA-HT-7693 
        6.05        42.74         0.10        14.96         0.10        17.52 
TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 
        6.90        14.53        39.48        19.23        39.09         0.23 
TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 
       50.63         0.49        23.61        37.15         0.33         0.13 
TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 
        3.68         5.33        35.47         3.72        11.28        31.43 
TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 
        1.64        16.24         9.40        63.55         0.10        37.87 
TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 
       33.01        12.23         6.25         0.10         0.46         2.50 
TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8563 
        5.56        13.78         0.23        29.59        34.19        28.27 
TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 
       15.72         0.23        26.04         0.13        20.22         0.07 
TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 
       27.35         0.10         5.33         2.70        16.93         1.81 
TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J 
       16.14        16.83        21.40        17.65         2.43        10.52 
TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 
       15.35        11.05         0.10        29.92        19.89         8.32 
TCGA-HW-7490 TCGA-HW-7493 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8322 
       19.23        35.90         4.31        21.70        21.60        17.82 
TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-8125 TCGA-KT-A7W1 
       20.35        12.76        20.81        20.71        42.77        14.40 
TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 
        0.23         6.71         1.64         2.37         2.30         4.11 
TCGA-P5-A5F1 TCGA-P5-A5F4 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A730 
        5.88         0.76         0.16        10.42        13.25         0.20 
TCGA-P5-A731 TCGA-P5-A733 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X 
        9.01        13.61        15.16         2.53        12.62        15.85 
TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CY TCGA-QH-A6CZ 
       19.33        14.83        14.53        13.61         2.20         9.17 
TCGA-QH-A6X3 TCGA-QH-A6X5 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 
       10.29        16.34        16.50         5.03        11.08        12.99 
TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y 
       88.83        94.03        32.65        59.38        30.87         5.46 
TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TW 
       28.08         2.07        19.59        30.67        62.17        37.84 
TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 
       34.49        31.33        28.70        22.95        17.62        23.64 
TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB 
       32.61        16.08        98.24        95.93         5.85       106.39 
TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL 
       69.50        72.59        80.12        32.45        84.99        31.10 
TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IX 
       19.86        15.91        18.61        14.07        36.13        22.32 
TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 
       23.51         7.13        20.02         8.19         2.04        17.03 
TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 
       13.12        28.37        13.02       169.84        10.39        99.06 
TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-TM-A7C3 TCGA-TM-A7C4 
       30.05        98.63        31.59        18.71        49.45        48.33 
TCGA-TM-A7CA TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H 
       34.78        24.92        16.18        59.05        40.64        30.44 
TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R 
       24.16        40.83        24.79        33.24        25.38        18.61 
TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RH TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB 
       14.93        23.80        15.98        30.08        13.51         0.10 
TCGA-VM-A8CE TCGA-VM-A8CH TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 
       35.93        23.47        16.01        23.21         8.05        51.06 
TCGA-WY-A858 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       43.96        43.40        45.80        46.88        37.71        20.81 

  DEL PEAK 47(XQ21.1) MUTATED DEL PEAK 47(XQ21.1) WILD-TYPE 
                         0.10                          0.03 
  DEL PEAK 47(XQ21.1) MUTATED DEL PEAK 47(XQ21.1) WILD-TYPE 
                       156.23                        211.17 
  DEL PEAK 47(XQ21.1) MUTATED DEL PEAK 47(XQ21.1) WILD-TYPE 
                       14.400                        14.845 
[1] "0.1 - 156.2 (14.4)" "0.0 - 211.2 (14.8)"
[1] "hr=" "1.1"
D79V2, continuous
D79V3, binary
                               cls
clus                              0   1
  DEL PEAK 47(XQ21.1) MUTATED   104  66
  DEL PEAK 47(XQ21.1) WILD-TYPE 466 406
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 47(XQ21.1) MUTATED    104   66
  DEL PEAK 47(XQ21.1) WILD-TYPE  466  406
                        clus
vv                       DEL PEAK 47(XQ21.1) MUTATED
  BRAIN                                          104
  CENTRAL NERVOUS SYSTEM                          66
                        clus
vv                       DEL PEAK 47(XQ21.1) WILD-TYPE
  BRAIN                                            466
  CENTRAL NERVOUS SYSTEM                           406
[1] 2 2
[1] FALSE
D79V4, binary
                               cls
clus                              0   1
  DEL PEAK 47(XQ21.1) MUTATED    72  98
  DEL PEAK 47(XQ21.1) WILD-TYPE 358 514
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 47(XQ21.1) MUTATED     72   98
  DEL PEAK 47(XQ21.1) WILD-TYPE  358  514
        clus
vv       DEL PEAK 47(XQ21.1) MUTATED DEL PEAK 47(XQ21.1) WILD-TYPE
  FEMALE                          72                           358
  MALE                            98                           514
[1] 2 2
[1] FALSE
D79V5, continuous
                               vv
clus                            ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  DEL PEAK 47(XQ21.1) MUTATED            25                             4
  DEL PEAK 47(XQ21.1) WILD-TYPE         151                            23
                               vv
clus                            OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  DEL PEAK 47(XQ21.1) MUTATED                 13                28
  DEL PEAK 47(XQ21.1) WILD-TYPE              105               150
                               vv
clus                            TREATED PRIMARY GBM
  DEL PEAK 47(XQ21.1) MUTATED                     2
  DEL PEAK 47(XQ21.1) WILD-TYPE                  16
                               vv
clus                            UNTREATED PRIMARY (DE NOVO) GBM
  DEL PEAK 47(XQ21.1) MUTATED                                98
  DEL PEAK 47(XQ21.1) WILD-TYPE                             427
D79V6, multiclass
                                 clus
vv                                DEL PEAK 47(XQ21.1) MUTATED
  ASTROCYTOMA                                              25
  GLIOBLASTOMA MULTIFORME (GBM)                             4
  OLIGOASTROCYTOMA                                         13
  OLIGODENDROGLIOMA                                        28
  TREATED PRIMARY GBM                                       2
  UNTREATED PRIMARY (DE NOVO) GBM                          98
                                 clus
vv                                DEL PEAK 47(XQ21.1) WILD-TYPE
  ASTROCYTOMA                                               151
  GLIOBLASTOMA MULTIFORME (GBM)                              23
  OLIGOASTROCYTOMA                                          105
  OLIGODENDROGLIOMA                                         150
  TREATED PRIMARY GBM                                        16
  UNTREATED PRIMARY (DE NOVO) GBM                           427
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D79V7, binary
                               cls
clus                              0   1
  DEL PEAK 47(XQ21.1) MUTATED    83  87
  DEL PEAK 47(XQ21.1) WILD-TYPE 391 481
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 47(XQ21.1) MUTATED     83   87
  DEL PEAK 47(XQ21.1) WILD-TYPE  391  481
     clus
vv    DEL PEAK 47(XQ21.1) MUTATED DEL PEAK 47(XQ21.1) WILD-TYPE
  NO                           83                           391
  YES                          87                           481
[1] 2 2
[1] FALSE
                               vv
clus                            AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 47(XQ21.1) MUTATED                                  0     5
  DEL PEAK 47(XQ21.1) WILD-TYPE                                1    16
                               vv
clus                            BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 47(XQ21.1) MUTATED                          10   149
  DEL PEAK 47(XQ21.1) WILD-TYPE                        54   773
D79V8, multiclass
                                  clus
vv                                 DEL PEAK 47(XQ21.1) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                           0
  ASIAN                                                      5
  BLACK OR AFRICAN AMERICAN                                 10
  WHITE                                                    149
                                  clus
vv                                 DEL PEAK 47(XQ21.1) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                             1
  ASIAN                                                       16
  BLACK OR AFRICAN AMERICAN                                   54
  WHITE                                                      773
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D79V9, binary
                               cls
clus                              0   1
  DEL PEAK 47(XQ21.1) MUTATED     4 146
  DEL PEAK 47(XQ21.1) WILD-TYPE  26 745
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 47(XQ21.1) MUTATED      4  146
  DEL PEAK 47(XQ21.1) WILD-TYPE   26  745
                        clus
vv                       DEL PEAK 47(XQ21.1) MUTATED
  HISPANIC OR LATINO                               4
  NOT HISPANIC OR LATINO                         146
                        clus
vv                       DEL PEAK 47(XQ21.1) WILD-TYPE
  HISPANIC OR LATINO                                26
  NOT HISPANIC OR LATINO                           745
[1] 2 2
[1] FALSE
