[1] "ofn"        "-oTHNSC-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/HNSC-TP/15111022/HNSC-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/HNSC-TP/15085744/transformed.cor.cli.txt"

nPatients in clinical file=528, in cluster file=522, common to both=522
[1]  77 522
[1] "AMP PEAK  1(2Q11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  1(2Q11.2) MUTATED AMP PEAK  1(2Q11.2) WILD-TYPE 
                          107                           415 
  AMP PEAK  1(2Q11.2) MUTATED AMP PEAK  1(2Q11.2) WILD-TYPE 
                          107                           415 
[1] "AMP PEAK  2(2Q31.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  2(2Q31.2) MUTATED AMP PEAK  2(2Q31.2) WILD-TYPE 
                          112                           410 
  AMP PEAK  2(2Q31.2) MUTATED AMP PEAK  2(2Q31.2) WILD-TYPE 
                          112                           410 
[1] "AMP PEAK  3(3Q26.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  3(3Q26.33) MUTATED AMP PEAK  3(3Q26.33) WILD-TYPE 
                           380                            142 
  AMP PEAK  3(3Q26.33) MUTATED AMP PEAK  3(3Q26.33) WILD-TYPE 
                           380                            142 
[1] "AMP PEAK  4(5P15.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  4(5P15.33) MUTATED AMP PEAK  4(5P15.33) WILD-TYPE 
                           240                            282 
  AMP PEAK  4(5P15.33) MUTATED AMP PEAK  4(5P15.33) WILD-TYPE 
                           240                            282 
[1] "AMP PEAK  5(6P12.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  5(6P12.1) MUTATED AMP PEAK  5(6P12.1) WILD-TYPE 
                          110                           412 
  AMP PEAK  5(6P12.1) MUTATED AMP PEAK  5(6P12.1) WILD-TYPE 
                          110                           412 
[1] "AMP PEAK  6(6Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  6(6Q12) MUTATED AMP PEAK  6(6Q12) WILD-TYPE 
                         96                         426 
  AMP PEAK  6(6Q12) MUTATED AMP PEAK  6(6Q12) WILD-TYPE 
                         96                         426 
[1] "AMP PEAK  7(7P11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  7(7P11.2) MUTATED AMP PEAK  7(7P11.2) WILD-TYPE 
                          222                           300 
  AMP PEAK  7(7P11.2) MUTATED AMP PEAK  7(7P11.2) WILD-TYPE 
                          222                           300 
[1] "AMP PEAK  8(7Q21.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  8(7Q21.3) MUTATED AMP PEAK  8(7Q21.3) WILD-TYPE 
                          169                           353 
  AMP PEAK  8(7Q21.3) MUTATED AMP PEAK  8(7Q21.3) WILD-TYPE 
                          169                           353 
[1] "AMP PEAK  9(8P11.23) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  9(8P11.23) MUTATED AMP PEAK  9(8P11.23) WILD-TYPE 
                           161                            361 
  AMP PEAK  9(8P11.23) MUTATED AMP PEAK  9(8P11.23) WILD-TYPE 
                           161                            361 
[1] "AMP PEAK 10(8Q11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 10(8Q11.21) MUTATED AMP PEAK 10(8Q11.21) WILD-TYPE 
                           310                            212 
  AMP PEAK 10(8Q11.21) MUTATED AMP PEAK 10(8Q11.21) WILD-TYPE 
                           310                            212 
[1] "AMP PEAK 11(8Q24.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE 
                           386                            136 
  AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE 
                           386                            136 
[1] "AMP PEAK 12(9P24.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 12(9P24.1) MUTATED AMP PEAK 12(9P24.1) WILD-TYPE 
                          126                           396 
  AMP PEAK 12(9P24.1) MUTATED AMP PEAK 12(9P24.1) WILD-TYPE 
                          126                           396 
[1] "AMP PEAK 13(9P23) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 13(9P23) MUTATED AMP PEAK 13(9P23) WILD-TYPE 
                        124                         398 
  AMP PEAK 13(9P23) MUTATED AMP PEAK 13(9P23) WILD-TYPE 
                        124                         398 
[1] "AMP PEAK 14(9P13.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 14(9P13.3) MUTATED AMP PEAK 14(9P13.3) WILD-TYPE 
                          139                           383 
  AMP PEAK 14(9P13.3) MUTATED AMP PEAK 14(9P13.3) WILD-TYPE 
                          139                           383 
[1] "AMP PEAK 15(9Q34.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 15(9Q34.3) MUTATED AMP PEAK 15(9Q34.3) WILD-TYPE 
                          177                           345 
  AMP PEAK 15(9Q34.3) MUTATED AMP PEAK 15(9Q34.3) WILD-TYPE 
                          177                           345 
[1] "AMP PEAK 16(11P13) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 16(11P13) MUTATED AMP PEAK 16(11P13) WILD-TYPE 
                         102                          420 
  AMP PEAK 16(11P13) MUTATED AMP PEAK 16(11P13) WILD-TYPE 
                         102                          420 
[1] "AMP PEAK 17(11Q13.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 17(11Q13.3) MUTATED AMP PEAK 17(11Q13.3) WILD-TYPE 
                           229                            293 
  AMP PEAK 17(11Q13.3) MUTATED AMP PEAK 17(11Q13.3) WILD-TYPE 
                           229                            293 
[1] "AMP PEAK 18(12P13.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 18(12P13.33) MUTATED AMP PEAK 18(12P13.33) WILD-TYPE 
                            167                             355 
  AMP PEAK 18(12P13.33) MUTATED AMP PEAK 18(12P13.33) WILD-TYPE 
                            167                             355 
[1] "AMP PEAK 19(12Q15) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE 
                         103                          419 
  AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE 
                         103                          419 
[1] "AMP PEAK 20(13Q22.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 20(13Q22.1) MUTATED AMP PEAK 20(13Q22.1) WILD-TYPE 
                           105                            417 
  AMP PEAK 20(13Q22.1) MUTATED AMP PEAK 20(13Q22.1) WILD-TYPE 
                           105                            417 
[1] "AMP PEAK 21(13Q34) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 21(13Q34) MUTATED AMP PEAK 21(13Q34) WILD-TYPE 
                         106                          416 
  AMP PEAK 21(13Q34) MUTATED AMP PEAK 21(13Q34) WILD-TYPE 
                         106                          416 
[1] "AMP PEAK 22(15Q26.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE 
                           105                            417 
  AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE 
                           105                            417 
[1] "AMP PEAK 23(17Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 23(17Q12) MUTATED AMP PEAK 23(17Q12) WILD-TYPE 
                          91                          431 
  AMP PEAK 23(17Q12) MUTATED AMP PEAK 23(17Q12) WILD-TYPE 
                          91                          431 
[1] "AMP PEAK 24(18P11.31) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 24(18P11.31) MUTATED AMP PEAK 24(18P11.31) WILD-TYPE 
                            156                             366 
  AMP PEAK 24(18P11.31) MUTATED AMP PEAK 24(18P11.31) WILD-TYPE 
                            156                             366 
[1] "AMP PEAK 25(18Q11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 25(18Q11.2) MUTATED AMP PEAK 25(18Q11.2) WILD-TYPE 
                           106                            416 
  AMP PEAK 25(18Q11.2) MUTATED AMP PEAK 25(18Q11.2) WILD-TYPE 
                           106                            416 
[1] "AMP PEAK 26(19P13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 26(19P13.2) MUTATED AMP PEAK 26(19P13.2) WILD-TYPE 
                            60                            462 
  AMP PEAK 26(19P13.2) MUTATED AMP PEAK 26(19P13.2) WILD-TYPE 
                            60                            462 
[1] "AMP PEAK 27(20P12.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 27(20P12.2) MUTATED AMP PEAK 27(20P12.2) WILD-TYPE 
                           191                            331 
  AMP PEAK 27(20P12.2) MUTATED AMP PEAK 27(20P12.2) WILD-TYPE 
                           191                            331 
[1] "AMP PEAK 28(20Q11.22) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 28(20Q11.22) MUTATED AMP PEAK 28(20Q11.22) WILD-TYPE 
                            227                             295 
  AMP PEAK 28(20Q11.22) MUTATED AMP PEAK 28(20Q11.22) WILD-TYPE 
                            227                             295 
[1] "AMP PEAK 29(XQ28) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 29(XQ28) MUTATED AMP PEAK 29(XQ28) WILD-TYPE 
                        150                         372 
  AMP PEAK 29(XQ28) MUTATED AMP PEAK 29(XQ28) WILD-TYPE 
                        150                         372 
[1] "DEL PEAK  1(1P36.21) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE 
                            95                            427 
  DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE 
                            95                            427 
[1] "DEL PEAK  2(1P13.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE 
                          133                           389 
  DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE 
                          133                           389 
[1] "DEL PEAK  3(1Q44) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE 
                         48                         474 
  DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE 
                         48                         474 
[1] "DEL PEAK  4(2Q21.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(2Q21.2) MUTATED DEL PEAK  4(2Q21.2) WILD-TYPE 
                           78                           444 
  DEL PEAK  4(2Q21.2) MUTATED DEL PEAK  4(2Q21.2) WILD-TYPE 
                           78                           444 
[1] "DEL PEAK  5(2Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE 
                          121                           401 
  DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE 
                          121                           401 
[1] "DEL PEAK  6(2Q36.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(2Q36.2) MUTATED DEL PEAK  6(2Q36.2) WILD-TYPE 
                          157                           365 
  DEL PEAK  6(2Q36.2) MUTATED DEL PEAK  6(2Q36.2) WILD-TYPE 
                          157                           365 
[1] "DEL PEAK  7(3P26.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(3P26.2) MUTATED DEL PEAK  7(3P26.2) WILD-TYPE 
                          348                           174 
  DEL PEAK  7(3P26.2) MUTATED DEL PEAK  7(3P26.2) WILD-TYPE 
                          348                           174 
[1] "DEL PEAK  8(3P24.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(3P24.1) MUTATED DEL PEAK  8(3P24.1) WILD-TYPE 
                          368                           154 
  DEL PEAK  8(3P24.1) MUTATED DEL PEAK  8(3P24.1) WILD-TYPE 
                          368                           154 
[1] "DEL PEAK  9(3P14.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(3P14.2) MUTATED DEL PEAK  9(3P14.2) WILD-TYPE 
                          372                           150 
  DEL PEAK  9(3P14.2) MUTATED DEL PEAK  9(3P14.2) WILD-TYPE 
                          372                           150 
[1] "DEL PEAK 10(3P12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(3P12.1) MUTATED DEL PEAK 10(3P12.1) WILD-TYPE 
                          343                           179 
  DEL PEAK 10(3P12.1) MUTATED DEL PEAK 10(3P12.1) WILD-TYPE 
                          343                           179 
[1] "DEL PEAK 11(4P15.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(4P15.2) MUTATED DEL PEAK 11(4P15.2) WILD-TYPE 
                          208                           314 
  DEL PEAK 11(4P15.2) MUTATED DEL PEAK 11(4P15.2) WILD-TYPE 
                          208                           314 
[1] "DEL PEAK 12(4Q21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(4Q21.3) MUTATED DEL PEAK 12(4Q21.3) WILD-TYPE 
                          156                           366 
  DEL PEAK 12(4Q21.3) MUTATED DEL PEAK 12(4Q21.3) WILD-TYPE 
                          156                           366 
[1] "DEL PEAK 13(4Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(4Q22.1) MUTATED DEL PEAK 13(4Q22.1) WILD-TYPE 
                          169                           353 
  DEL PEAK 13(4Q22.1) MUTATED DEL PEAK 13(4Q22.1) WILD-TYPE 
                          169                           353 
[1] "DEL PEAK 14(4Q35.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(4Q35.2) MUTATED DEL PEAK 14(4Q35.2) WILD-TYPE 
                          213                           309 
  DEL PEAK 14(4Q35.2) MUTATED DEL PEAK 14(4Q35.2) WILD-TYPE 
                          213                           309 
[1] "DEL PEAK 15(5Q12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(5Q12.1) MUTATED DEL PEAK 15(5Q12.1) WILD-TYPE 
                          215                           307 
  DEL PEAK 15(5Q12.1) MUTATED DEL PEAK 15(5Q12.1) WILD-TYPE 
                          215                           307 
[1] "DEL PEAK 16(5Q15) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(5Q15) MUTATED DEL PEAK 16(5Q15) WILD-TYPE 
                        226                         296 
  DEL PEAK 16(5Q15) MUTATED DEL PEAK 16(5Q15) WILD-TYPE 
                        226                         296 
[1] "DEL PEAK 17(5Q35.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(5Q35.3) MUTATED DEL PEAK 17(5Q35.3) WILD-TYPE 
                          199                           323 
  DEL PEAK 17(5Q35.3) MUTATED DEL PEAK 17(5Q35.3) WILD-TYPE 
                          199                           323 
[1] "DEL PEAK 18(6P25.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(6P25.3) MUTATED DEL PEAK 18(6P25.3) WILD-TYPE 
                           96                           426 
  DEL PEAK 18(6P25.3) MUTATED DEL PEAK 18(6P25.3) WILD-TYPE 
                           96                           426 
[1] "DEL PEAK 19(7Q31.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 19(7Q31.1) MUTATED DEL PEAK 19(7Q31.1) WILD-TYPE 
                           77                           445 
  DEL PEAK 19(7Q31.1) MUTATED DEL PEAK 19(7Q31.1) WILD-TYPE 
                           77                           445 
[1] "DEL PEAK 20(7Q36.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 20(7Q36.1) MUTATED DEL PEAK 20(7Q36.1) WILD-TYPE 
                          132                           390 
  DEL PEAK 20(7Q36.1) MUTATED DEL PEAK 20(7Q36.1) WILD-TYPE 
                          132                           390 
[1] "DEL PEAK 21(8P23.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 21(8P23.2) MUTATED DEL PEAK 21(8P23.2) WILD-TYPE 
                          304                           218 
  DEL PEAK 21(8P23.2) MUTATED DEL PEAK 21(8P23.2) WILD-TYPE 
                          304                           218 
[1] "DEL PEAK 22(9P23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 22(9P23) MUTATED DEL PEAK 22(9P23) WILD-TYPE 
                        239                         283 
  DEL PEAK 22(9P23) MUTATED DEL PEAK 22(9P23) WILD-TYPE 
                        239                         283 
[1] "DEL PEAK 23(9P21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 23(9P21.3) MUTATED DEL PEAK 23(9P21.3) WILD-TYPE 
                          302                           220 
  DEL PEAK 23(9P21.3) MUTATED DEL PEAK 23(9P21.3) WILD-TYPE 
                          302                           220 
[1] "DEL PEAK 24(9Q21.11) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 24(9Q21.11) MUTATED DEL PEAK 24(9Q21.11) WILD-TYPE 
                           108                            414 
  DEL PEAK 24(9Q21.11) MUTATED DEL PEAK 24(9Q21.11) WILD-TYPE 
                           108                            414 
[1] "DEL PEAK 25(9Q34.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 25(9Q34.3) MUTATED DEL PEAK 25(9Q34.3) WILD-TYPE 
                           79                           443 
  DEL PEAK 25(9Q34.3) MUTATED DEL PEAK 25(9Q34.3) WILD-TYPE 
                           79                           443 
[1] "DEL PEAK 26(10P15.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 26(10P15.3) MUTATED DEL PEAK 26(10P15.3) WILD-TYPE 
                           170                            352 
  DEL PEAK 26(10P15.3) MUTATED DEL PEAK 26(10P15.3) WILD-TYPE 
                           170                            352 
[1] "DEL PEAK 27(10P11.21) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 27(10P11.21) MUTATED DEL PEAK 27(10P11.21) WILD-TYPE 
                            162                             360 
  DEL PEAK 27(10P11.21) MUTATED DEL PEAK 27(10P11.21) WILD-TYPE 
                            162                             360 
[1] "DEL PEAK 28(10Q23.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 28(10Q23.31) MUTATED DEL PEAK 28(10Q23.31) WILD-TYPE 
                            138                             384 
  DEL PEAK 28(10Q23.31) MUTATED DEL PEAK 28(10Q23.31) WILD-TYPE 
                            138                             384 
[1] "DEL PEAK 29(11P15.5) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 29(11P15.5) MUTATED DEL PEAK 29(11P15.5) WILD-TYPE 
                           163                            359 
  DEL PEAK 29(11P15.5) MUTATED DEL PEAK 29(11P15.5) WILD-TYPE 
                           163                            359 
[1] "DEL PEAK 30(11Q23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 30(11Q23.1) MUTATED DEL PEAK 30(11Q23.1) WILD-TYPE 
                           246                            276 
  DEL PEAK 30(11Q23.1) MUTATED DEL PEAK 30(11Q23.1) WILD-TYPE 
                           246                            276 
[1] "DEL PEAK 31(12Q24.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 31(12Q24.33) MUTATED DEL PEAK 31(12Q24.33) WILD-TYPE 
                             63                             459 
  DEL PEAK 31(12Q24.33) MUTATED DEL PEAK 31(12Q24.33) WILD-TYPE 
                             63                             459 
[1] "DEL PEAK 32(13Q12.11) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 32(13Q12.11) MUTATED DEL PEAK 32(13Q12.11) WILD-TYPE 
                            233                             289 
  DEL PEAK 32(13Q12.11) MUTATED DEL PEAK 32(13Q12.11) WILD-TYPE 
                            233                             289 
[1] "DEL PEAK 33(13Q14.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 33(13Q14.2) MUTATED DEL PEAK 33(13Q14.2) WILD-TYPE 
                           217                            305 
  DEL PEAK 33(13Q14.2) MUTATED DEL PEAK 33(13Q14.2) WILD-TYPE 
                           217                            305 
[1] "DEL PEAK 34(14Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 34(14Q11.2) MUTATED DEL PEAK 34(14Q11.2) WILD-TYPE 
                            75                            447 
  DEL PEAK 34(14Q11.2) MUTATED DEL PEAK 34(14Q11.2) WILD-TYPE 
                            75                            447 
[1] "DEL PEAK 35(14Q32.32) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 35(14Q32.32) MUTATED DEL PEAK 35(14Q32.32) WILD-TYPE 
                             75                             447 
  DEL PEAK 35(14Q32.32) MUTATED DEL PEAK 35(14Q32.32) WILD-TYPE 
                             75                             447 
[1] "DEL PEAK 36(15Q15.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 36(15Q15.1) MUTATED DEL PEAK 36(15Q15.1) WILD-TYPE 
                           124                            398 
  DEL PEAK 36(15Q15.1) MUTATED DEL PEAK 36(15Q15.1) WILD-TYPE 
                           124                            398 
[1] "DEL PEAK 37(16Q23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 37(16Q23.1) MUTATED DEL PEAK 37(16Q23.1) WILD-TYPE 
                            98                            424 
  DEL PEAK 37(16Q23.1) MUTATED DEL PEAK 37(16Q23.1) WILD-TYPE 
                            98                            424 
[1] "DEL PEAK 38(16Q23.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 38(16Q23.3) MUTATED DEL PEAK 38(16Q23.3) WILD-TYPE 
                           105                            417 
  DEL PEAK 38(16Q23.3) MUTATED DEL PEAK 38(16Q23.3) WILD-TYPE 
                           105                            417 
[1] "DEL PEAK 39(17P11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 39(17P11.2) MUTATED DEL PEAK 39(17P11.2) WILD-TYPE 
                            99                            423 
  DEL PEAK 39(17P11.2) MUTATED DEL PEAK 39(17P11.2) WILD-TYPE 
                            99                            423 
[1] "DEL PEAK 40(17Q25.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 40(17Q25.3) MUTATED DEL PEAK 40(17Q25.3) WILD-TYPE 
                            71                            451 
  DEL PEAK 40(17Q25.3) MUTATED DEL PEAK 40(17Q25.3) WILD-TYPE 
                            71                            451 
[1] "DEL PEAK 41(18Q21.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 41(18Q21.2) MUTATED DEL PEAK 41(18Q21.2) WILD-TYPE 
                           268                            254 
  DEL PEAK 41(18Q21.2) MUTATED DEL PEAK 41(18Q21.2) WILD-TYPE 
                           268                            254 
[1] "DEL PEAK 42(18Q23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 42(18Q23) MUTATED DEL PEAK 42(18Q23) WILD-TYPE 
                         288                          234 
  DEL PEAK 42(18Q23) MUTATED DEL PEAK 42(18Q23) WILD-TYPE 
                         288                          234 
[1] "DEL PEAK 43(19P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 43(19P13.3) MUTATED DEL PEAK 43(19P13.3) WILD-TYPE 
                           175                            347 
  DEL PEAK 43(19P13.3) MUTATED DEL PEAK 43(19P13.3) WILD-TYPE 
                           175                            347 
[1] "DEL PEAK 44(19Q13.43) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 44(19Q13.43) MUTATED DEL PEAK 44(19Q13.43) WILD-TYPE 
                             97                             425 
  DEL PEAK 44(19Q13.43) MUTATED DEL PEAK 44(19Q13.43) WILD-TYPE 
                             97                             425 
[1] "DEL PEAK 45(21Q22.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 45(21Q22.3) MUTATED DEL PEAK 45(21Q22.3) WILD-TYPE 
                           208                            314 
  DEL PEAK 45(21Q22.3) MUTATED DEL PEAK 45(21Q22.3) WILD-TYPE 
                           208                            314 
[1] "DEL PEAK 46(XP22.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 46(XP22.2) MUTATED DEL PEAK 46(XP22.2) WILD-TYPE 
                          157                           365 
  DEL PEAK 46(XP22.2) MUTATED DEL PEAK 46(XP22.2) WILD-TYPE 
                          157                           365 
[1] "DEL PEAK 47(XP21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 47(XP21.3) MUTATED DEL PEAK 47(XP21.3) WILD-TYPE 
                          159                           363 
  DEL PEAK 47(XP21.3) MUTATED DEL PEAK 47(XP21.3) WILD-TYPE 
                          159                           363 
[1] "DEL PEAK 48(XQ21.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 48(XQ21.33) MUTATED DEL PEAK 48(XQ21.33) WILD-TYPE 
                            80                            442 
  DEL PEAK 48(XQ21.33) MUTATED DEL PEAK 48(XQ21.33) WILD-TYPE 
                            80                            442 
[1] "data2feature, selection=ALL"
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 10 rows and 522 columns.

Variable 1:'CN_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'RPPA_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'RPPA_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MRNASEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_MATURE_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "## **** detect survival parameters (defined in index such as ind_OS, ind_MFS, ind_RFS, ind_RFS, ind_BCR and ind_d2ssd) *** ##"
[1] "detected survival parameters using [ind_OS, overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_OS, curated_overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_TCGAOS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survivial parameters using [ind_MFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_RFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_BCR]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_Progression]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [index_additional_survival_time]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using condition: [is.null(surv.mat)&&(selection=='SURV')]"
[1] "survival parameters accumulated so far"
NULL
[1] "************ conversion from categorical data to rank data ********** "
[1] "****** SUMMARY ***** "
Output Data has 522 columns, 0 survival variables, and 10 non-survival variables.
[1] "* survival variables: "
NULL
[1] "* non-survival variables: "
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
CN_CNMF, nv=4, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=7, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=4, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=5, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE

Clustering(1) Variable = AMP PEAK  1(2Q11.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(2Q11.2) MUTATED       36     59     10      2
  AMP PEAK  1(2Q11.2) WILD-TYPE    119     76    179     41
D1V1, multiclass
        clus
vv       AMP PEAK  1(2Q11.2) MUTATED AMP PEAK  1(2Q11.2) WILD-TYPE
  CLUS_1                          36                           119
  CLUS_2                          59                            76
  CLUS_3                          10                           179
  CLUS_4                           2                            41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(2Q11.2) MUTATED        6     32     20     39      2      4
  AMP PEAK  1(2Q11.2) WILD-TYPE     78     47     76     53     76     71
                               vv
clus                            CLUS_7
  AMP PEAK  1(2Q11.2) MUTATED        4
  AMP PEAK  1(2Q11.2) WILD-TYPE     14
D1V2, multiclass
        clus
vv       AMP PEAK  1(2Q11.2) MUTATED AMP PEAK  1(2Q11.2) WILD-TYPE
  CLUS_1                           6                            78
  CLUS_2                          32                            47
  CLUS_3                          20                            76
  CLUS_4                          39                            53
  CLUS_5                           2                            76
  CLUS_6                           4                            71
  CLUS_7                           4                            14
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(2Q11.2) MUTATED       12     17      9     14
  AMP PEAK  1(2Q11.2) WILD-TYPE     41     34     28     51
D1V3, multiclass
        clus
vv       AMP PEAK  1(2Q11.2) MUTATED AMP PEAK  1(2Q11.2) WILD-TYPE
  CLUS_1                          12                            41
  CLUS_2                          17                            34
  CLUS_3                           9                            28
  CLUS_4                          14                            51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(2Q11.2) MUTATED       16     22     14
  AMP PEAK  1(2Q11.2) WILD-TYPE     60     60     34
D1V4, multiclass
        clus
vv       AMP PEAK  1(2Q11.2) MUTATED AMP PEAK  1(2Q11.2) WILD-TYPE
  CLUS_1                          16                            60
  CLUS_2                          22                            60
  CLUS_3                          14                            34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(2Q11.2) MUTATED       28     53     25
  AMP PEAK  1(2Q11.2) WILD-TYPE    113    159    136
D1V5, multiclass
        clus
vv       AMP PEAK  1(2Q11.2) MUTATED AMP PEAK  1(2Q11.2) WILD-TYPE
  CLUS_1                          28                           113
  CLUS_2                          53                           159
  CLUS_3                          25                           136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(2Q11.2) MUTATED       32     44     28      2
  AMP PEAK  1(2Q11.2) WILD-TYPE    144     59    142     63
D1V6, multiclass
        clus
vv       AMP PEAK  1(2Q11.2) MUTATED AMP PEAK  1(2Q11.2) WILD-TYPE
  CLUS_1                          32                           144
  CLUS_2                          44                            59
  CLUS_3                          28                           142
  CLUS_4                           2                            63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(2Q11.2) MUTATED       57     23     25
  AMP PEAK  1(2Q11.2) WILD-TYPE    164    129    120
D1V7, multiclass
        clus
vv       AMP PEAK  1(2Q11.2) MUTATED AMP PEAK  1(2Q11.2) WILD-TYPE
  CLUS_1                          57                           164
  CLUS_2                          23                           129
  CLUS_3                          25                           120
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(2Q11.2) MUTATED       35     44     26
  AMP PEAK  1(2Q11.2) WILD-TYPE    155     98    160
D1V8, multiclass
        clus
vv       AMP PEAK  1(2Q11.2) MUTATED AMP PEAK  1(2Q11.2) WILD-TYPE
  CLUS_1                          35                           155
  CLUS_2                          44                            98
  CLUS_3                          26                           160
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(2Q11.2) MUTATED       18     22     31     22      3
  AMP PEAK  1(2Q11.2) WILD-TYPE     54    118     67     94     44
D1V9, multiclass
        clus
vv       AMP PEAK  1(2Q11.2) MUTATED AMP PEAK  1(2Q11.2) WILD-TYPE
  CLUS_1                          18                            54
  CLUS_2                          22                           118
  CLUS_3                          31                            67
  CLUS_4                          22                            94
  CLUS_5                           3                            44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(2Q11.2) MUTATED       34     51     11
  AMP PEAK  1(2Q11.2) WILD-TYPE    106    193     78
D1V10, multiclass
        clus
vv       AMP PEAK  1(2Q11.2) MUTATED AMP PEAK  1(2Q11.2) WILD-TYPE
  CLUS_1                          34                           106
  CLUS_2                          51                           193
  CLUS_3                          11                            78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = AMP PEAK  2(2Q31.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(2Q31.2) MUTATED       37     63     10      2
  AMP PEAK  2(2Q31.2) WILD-TYPE    118     72    179     41
D2V1, multiclass
        clus
vv       AMP PEAK  2(2Q31.2) MUTATED AMP PEAK  2(2Q31.2) WILD-TYPE
  CLUS_1                          37                           118
  CLUS_2                          63                            72
  CLUS_3                          10                           179
  CLUS_4                           2                            41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(2Q31.2) MUTATED        8     25     18     49      5      4
  AMP PEAK  2(2Q31.2) WILD-TYPE     76     54     78     43     73     71
                               vv
clus                            CLUS_7
  AMP PEAK  2(2Q31.2) MUTATED        3
  AMP PEAK  2(2Q31.2) WILD-TYPE     15
D2V2, multiclass
        clus
vv       AMP PEAK  2(2Q31.2) MUTATED AMP PEAK  2(2Q31.2) WILD-TYPE
  CLUS_1                           8                            76
  CLUS_2                          25                            54
  CLUS_3                          18                            78
  CLUS_4                          49                            43
  CLUS_5                           5                            73
  CLUS_6                           4                            71
  CLUS_7                           3                            15
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(2Q31.2) MUTATED       11     19      9     15
  AMP PEAK  2(2Q31.2) WILD-TYPE     42     32     28     50
D2V3, multiclass
        clus
vv       AMP PEAK  2(2Q31.2) MUTATED AMP PEAK  2(2Q31.2) WILD-TYPE
  CLUS_1                          11                            42
  CLUS_2                          19                            32
  CLUS_3                           9                            28
  CLUS_4                          15                            50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(2Q31.2) MUTATED       16     26     12
  AMP PEAK  2(2Q31.2) WILD-TYPE     60     56     36
D2V4, multiclass
        clus
vv       AMP PEAK  2(2Q31.2) MUTATED AMP PEAK  2(2Q31.2) WILD-TYPE
  CLUS_1                          16                            60
  CLUS_2                          26                            56
  CLUS_3                          12                            36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(2Q31.2) MUTATED       32     52     28
  AMP PEAK  2(2Q31.2) WILD-TYPE    109    160    133
D2V5, multiclass
        clus
vv       AMP PEAK  2(2Q31.2) MUTATED AMP PEAK  2(2Q31.2) WILD-TYPE
  CLUS_1                          32                           109
  CLUS_2                          52                           160
  CLUS_3                          28                           133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(2Q31.2) MUTATED       35     41     32      4
  AMP PEAK  2(2Q31.2) WILD-TYPE    141     62    138     61
D2V6, multiclass
        clus
vv       AMP PEAK  2(2Q31.2) MUTATED AMP PEAK  2(2Q31.2) WILD-TYPE
  CLUS_1                          35                           141
  CLUS_2                          41                            62
  CLUS_3                          32                           138
  CLUS_4                           4                            61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(2Q31.2) MUTATED       54     23     33
  AMP PEAK  2(2Q31.2) WILD-TYPE    167    129    112
D2V7, multiclass
        clus
vv       AMP PEAK  2(2Q31.2) MUTATED AMP PEAK  2(2Q31.2) WILD-TYPE
  CLUS_1                          54                           167
  CLUS_2                          23                           129
  CLUS_3                          33                           112
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(2Q31.2) MUTATED       40     42     28
  AMP PEAK  2(2Q31.2) WILD-TYPE    150    100    158
D2V8, multiclass
        clus
vv       AMP PEAK  2(2Q31.2) MUTATED AMP PEAK  2(2Q31.2) WILD-TYPE
  CLUS_1                          40                           150
  CLUS_2                          42                           100
  CLUS_3                          28                           158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(2Q31.2) MUTATED       22     25     30     24      2
  AMP PEAK  2(2Q31.2) WILD-TYPE     50    115     68     92     45
D2V9, multiclass
        clus
vv       AMP PEAK  2(2Q31.2) MUTATED AMP PEAK  2(2Q31.2) WILD-TYPE
  CLUS_1                          22                            50
  CLUS_2                          25                           115
  CLUS_3                          30                            68
  CLUS_4                          24                            92
  CLUS_5                           2                            45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(2Q31.2) MUTATED       41     51     11
  AMP PEAK  2(2Q31.2) WILD-TYPE     99    193     78
D2V10, multiclass
        clus
vv       AMP PEAK  2(2Q31.2) MUTATED AMP PEAK  2(2Q31.2) WILD-TYPE
  CLUS_1                          41                            99
  CLUS_2                          51                           193
  CLUS_3                          11                            78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = AMP PEAK  3(3Q26.33) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(3Q26.33) MUTATED      130    125     94     31
  AMP PEAK  3(3Q26.33) WILD-TYPE     25     10     95     12
D3V1, multiclass
        clus
vv       AMP PEAK  3(3Q26.33) MUTATED AMP PEAK  3(3Q26.33) WILD-TYPE
  CLUS_1                          130                             25
  CLUS_2                          125                             10
  CLUS_3                           94                             95
  CLUS_4                           31                             12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(3Q26.33) MUTATED       49     66     77     85     62     28
  AMP PEAK  3(3Q26.33) WILD-TYPE     35     13     19      7     16     47
                                vv
clus                             CLUS_7
  AMP PEAK  3(3Q26.33) MUTATED       13
  AMP PEAK  3(3Q26.33) WILD-TYPE      5
D3V2, multiclass
        clus
vv       AMP PEAK  3(3Q26.33) MUTATED AMP PEAK  3(3Q26.33) WILD-TYPE
  CLUS_1                           49                             35
  CLUS_2                           66                             13
  CLUS_3                           77                             19
  CLUS_4                           85                              7
  CLUS_5                           62                             16
  CLUS_6                           28                             47
  CLUS_7                           13                              5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(3Q26.33) MUTATED       38     44     25     46
  AMP PEAK  3(3Q26.33) WILD-TYPE     15      7     12     19
D3V3, multiclass
        clus
vv       AMP PEAK  3(3Q26.33) MUTATED AMP PEAK  3(3Q26.33) WILD-TYPE
  CLUS_1                           38                             15
  CLUS_2                           44                              7
  CLUS_3                           25                             12
  CLUS_4                           46                             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(3Q26.33) MUTATED       52     65     36
  AMP PEAK  3(3Q26.33) WILD-TYPE     24     17     12
D3V4, multiclass
        clus
vv       AMP PEAK  3(3Q26.33) MUTATED AMP PEAK  3(3Q26.33) WILD-TYPE
  CLUS_1                           52                             24
  CLUS_2                           65                             17
  CLUS_3                           36                             12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(3Q26.33) MUTATED      105    177     94
  AMP PEAK  3(3Q26.33) WILD-TYPE     36     35     67
D3V5, multiclass
        clus
vv       AMP PEAK  3(3Q26.33) MUTATED AMP PEAK  3(3Q26.33) WILD-TYPE
  CLUS_1                          105                             36
  CLUS_2                          177                             35
  CLUS_3                           94                             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(3Q26.33) MUTATED      130     89    107     50
  AMP PEAK  3(3Q26.33) WILD-TYPE     46     14     63     15
D3V6, multiclass
        clus
vv       AMP PEAK  3(3Q26.33) MUTATED AMP PEAK  3(3Q26.33) WILD-TYPE
  CLUS_1                          130                             46
  CLUS_2                           89                             14
  CLUS_3                          107                             63
  CLUS_4                           50                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(3Q26.33) MUTATED      178     95    103
  AMP PEAK  3(3Q26.33) WILD-TYPE     43     57     42
D3V7, multiclass
        clus
vv       AMP PEAK  3(3Q26.33) MUTATED AMP PEAK  3(3Q26.33) WILD-TYPE
  CLUS_1                          178                             43
  CLUS_2                           95                             57
  CLUS_3                          103                             42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(3Q26.33) MUTATED      140    106    130
  AMP PEAK  3(3Q26.33) WILD-TYPE     50     36     56
D3V8, multiclass
        clus
vv       AMP PEAK  3(3Q26.33) MUTATED AMP PEAK  3(3Q26.33) WILD-TYPE
  CLUS_1                          140                             50
  CLUS_2                          106                             36
  CLUS_3                          130                             56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(3Q26.33) MUTATED       57     84     84     80     32
  AMP PEAK  3(3Q26.33) WILD-TYPE     15     56     14     36     15
D3V9, multiclass
        clus
vv       AMP PEAK  3(3Q26.33) MUTATED AMP PEAK  3(3Q26.33) WILD-TYPE
  CLUS_1                           57                             15
  CLUS_2                           84                             56
  CLUS_3                           84                             14
  CLUS_4                           80                             36
  CLUS_5                           32                             15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(3Q26.33) MUTATED      103    178     56
  AMP PEAK  3(3Q26.33) WILD-TYPE     37     66     33
D3V10, multiclass
        clus
vv       AMP PEAK  3(3Q26.33) MUTATED AMP PEAK  3(3Q26.33) WILD-TYPE
  CLUS_1                          103                             37
  CLUS_2                          178                             66
  CLUS_3                           56                             33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = AMP PEAK  4(5P15.33) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(5P15.33) MUTATED       93     88     44     15
  AMP PEAK  4(5P15.33) WILD-TYPE     62     47    145     28
D4V1, multiclass
        clus
vv       AMP PEAK  4(5P15.33) MUTATED AMP PEAK  4(5P15.33) WILD-TYPE
  CLUS_1                           93                             62
  CLUS_2                           88                             47
  CLUS_3                           44                            145
  CLUS_4                           15                             28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(5P15.33) MUTATED       29     45     54     52     35     15
  AMP PEAK  4(5P15.33) WILD-TYPE     55     34     42     40     43     60
                                vv
clus                             CLUS_7
  AMP PEAK  4(5P15.33) MUTATED       10
  AMP PEAK  4(5P15.33) WILD-TYPE      8
D4V2, multiclass
        clus
vv       AMP PEAK  4(5P15.33) MUTATED AMP PEAK  4(5P15.33) WILD-TYPE
  CLUS_1                           29                             55
  CLUS_2                           45                             34
  CLUS_3                           54                             42
  CLUS_4                           52                             40
  CLUS_5                           35                             43
  CLUS_6                           15                             60
  CLUS_7                           10                              8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(5P15.33) MUTATED       23     23     14     25
  AMP PEAK  4(5P15.33) WILD-TYPE     30     28     23     40
D4V3, multiclass
        clus
vv       AMP PEAK  4(5P15.33) MUTATED AMP PEAK  4(5P15.33) WILD-TYPE
  CLUS_1                           23                             30
  CLUS_2                           23                             28
  CLUS_3                           14                             23
  CLUS_4                           25                             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(5P15.33) MUTATED       30     36     19
  AMP PEAK  4(5P15.33) WILD-TYPE     46     46     29
D4V4, multiclass
        clus
vv       AMP PEAK  4(5P15.33) MUTATED AMP PEAK  4(5P15.33) WILD-TYPE
  CLUS_1                           30                             46
  CLUS_2                           36                             46
  CLUS_3                           19                             29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(5P15.33) MUTATED       73    104     62
  AMP PEAK  4(5P15.33) WILD-TYPE     68    108     99
D4V5, multiclass
        clus
vv       AMP PEAK  4(5P15.33) MUTATED AMP PEAK  4(5P15.33) WILD-TYPE
  CLUS_1                           73                             68
  CLUS_2                          104                            108
  CLUS_3                           62                             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(5P15.33) MUTATED       82     53     75     29
  AMP PEAK  4(5P15.33) WILD-TYPE     94     50     95     36
D4V6, multiclass
        clus
vv       AMP PEAK  4(5P15.33) MUTATED AMP PEAK  4(5P15.33) WILD-TYPE
  CLUS_1                           82                             94
  CLUS_2                           53                             50
  CLUS_3                           75                             95
  CLUS_4                           29                             36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(5P15.33) MUTATED      102     64     71
  AMP PEAK  4(5P15.33) WILD-TYPE    119     88     74
D4V7, multiclass
        clus
vv       AMP PEAK  4(5P15.33) MUTATED AMP PEAK  4(5P15.33) WILD-TYPE
  CLUS_1                          102                            119
  CLUS_2                           64                             88
  CLUS_3                           71                             74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(5P15.33) MUTATED       86     77     74
  AMP PEAK  4(5P15.33) WILD-TYPE    104     65    112
D4V8, multiclass
        clus
vv       AMP PEAK  4(5P15.33) MUTATED AMP PEAK  4(5P15.33) WILD-TYPE
  CLUS_1                           86                            104
  CLUS_2                           77                             65
  CLUS_3                           74                            112
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(5P15.33) MUTATED       35     60     52     51     19
  AMP PEAK  4(5P15.33) WILD-TYPE     37     80     46     65     28
D4V9, multiclass
        clus
vv       AMP PEAK  4(5P15.33) MUTATED AMP PEAK  4(5P15.33) WILD-TYPE
  CLUS_1                           35                             37
  CLUS_2                           60                             80
  CLUS_3                           52                             46
  CLUS_4                           51                             65
  CLUS_5                           19                             28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(5P15.33) MUTATED       65    112     40
  AMP PEAK  4(5P15.33) WILD-TYPE     75    132     49
D4V10, multiclass
        clus
vv       AMP PEAK  4(5P15.33) MUTATED AMP PEAK  4(5P15.33) WILD-TYPE
  CLUS_1                           65                             75
  CLUS_2                          112                            132
  CLUS_3                           40                             49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = AMP PEAK  5(6P12.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(6P12.1) MUTATED       46     37     16     11
  AMP PEAK  5(6P12.1) WILD-TYPE    109     98    173     32
D5V1, multiclass
        clus
vv       AMP PEAK  5(6P12.1) MUTATED AMP PEAK  5(6P12.1) WILD-TYPE
  CLUS_1                          46                           109
  CLUS_2                          37                            98
  CLUS_3                          16                           173
  CLUS_4                          11                            32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(6P12.1) MUTATED       10     26     32     23      7      8
  AMP PEAK  5(6P12.1) WILD-TYPE     74     53     64     69     71     67
                               vv
clus                            CLUS_7
  AMP PEAK  5(6P12.1) MUTATED        4
  AMP PEAK  5(6P12.1) WILD-TYPE     14
D5V2, multiclass
        clus
vv       AMP PEAK  5(6P12.1) MUTATED AMP PEAK  5(6P12.1) WILD-TYPE
  CLUS_1                          10                            74
  CLUS_2                          26                            53
  CLUS_3                          32                            64
  CLUS_4                          23                            69
  CLUS_5                           7                            71
  CLUS_6                           8                            67
  CLUS_7                           4                            14
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(6P12.1) MUTATED        9     13     10     11
  AMP PEAK  5(6P12.1) WILD-TYPE     44     38     27     54
D5V3, multiclass
        clus
vv       AMP PEAK  5(6P12.1) MUTATED AMP PEAK  5(6P12.1) WILD-TYPE
  CLUS_1                           9                            44
  CLUS_2                          13                            38
  CLUS_3                          10                            27
  CLUS_4                          11                            54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(6P12.1) MUTATED       16     18      9
  AMP PEAK  5(6P12.1) WILD-TYPE     60     64     39
D5V4, multiclass
        clus
vv       AMP PEAK  5(6P12.1) MUTATED AMP PEAK  5(6P12.1) WILD-TYPE
  CLUS_1                          16                            60
  CLUS_2                          18                            64
  CLUS_3                           9                            39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(6P12.1) MUTATED       33     42     33
  AMP PEAK  5(6P12.1) WILD-TYPE    108    170    128
D5V5, multiclass
        clus
vv       AMP PEAK  5(6P12.1) MUTATED AMP PEAK  5(6P12.1) WILD-TYPE
  CLUS_1                          33                           108
  CLUS_2                          42                           170
  CLUS_3                          33                           128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(6P12.1) MUTATED       39     28     35      6
  AMP PEAK  5(6P12.1) WILD-TYPE    137     75    135     59
D5V6, multiclass
        clus
vv       AMP PEAK  5(6P12.1) MUTATED AMP PEAK  5(6P12.1) WILD-TYPE
  CLUS_1                          39                           137
  CLUS_2                          28                            75
  CLUS_3                          35                           135
  CLUS_4                           6                            59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(6P12.1) MUTATED       41     33     35
  AMP PEAK  5(6P12.1) WILD-TYPE    180    119    110
D5V7, multiclass
        clus
vv       AMP PEAK  5(6P12.1) MUTATED AMP PEAK  5(6P12.1) WILD-TYPE
  CLUS_1                          41                           180
  CLUS_2                          33                           119
  CLUS_3                          35                           110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(6P12.1) MUTATED       48     37     24
  AMP PEAK  5(6P12.1) WILD-TYPE    142    105    162
D5V8, multiclass
        clus
vv       AMP PEAK  5(6P12.1) MUTATED AMP PEAK  5(6P12.1) WILD-TYPE
  CLUS_1                          48                           142
  CLUS_2                          37                           105
  CLUS_3                          24                           162
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(6P12.1) MUTATED       18     30     24     26      3
  AMP PEAK  5(6P12.1) WILD-TYPE     54    110     74     90     44
D5V9, multiclass
        clus
vv       AMP PEAK  5(6P12.1) MUTATED AMP PEAK  5(6P12.1) WILD-TYPE
  CLUS_1                          18                            54
  CLUS_2                          30                           110
  CLUS_3                          24                            74
  CLUS_4                          26                            90
  CLUS_5                           3                            44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(6P12.1) MUTATED       34     44     23
  AMP PEAK  5(6P12.1) WILD-TYPE    106    200     66
D5V10, multiclass
        clus
vv       AMP PEAK  5(6P12.1) MUTATED AMP PEAK  5(6P12.1) WILD-TYPE
  CLUS_1                          34                           106
  CLUS_2                          44                           200
  CLUS_3                          23                            66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = AMP PEAK  6(6Q12) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(6Q12) MUTATED       44     30     12     10
  AMP PEAK  6(6Q12) WILD-TYPE    111    105    177     33
D6V1, multiclass
        clus
vv       AMP PEAK  6(6Q12) MUTATED AMP PEAK  6(6Q12) WILD-TYPE
  CLUS_1                        44                         111
  CLUS_2                        30                         105
  CLUS_3                        12                         177
  CLUS_4                        10                          33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK  6(6Q12) MUTATED       10     18     26     25      4      9      4
  AMP PEAK  6(6Q12) WILD-TYPE     74     61     70     67     74     66     14
D6V2, multiclass
        clus
vv       AMP PEAK  6(6Q12) MUTATED AMP PEAK  6(6Q12) WILD-TYPE
  CLUS_1                        10                          74
  CLUS_2                        18                          61
  CLUS_3                        26                          70
  CLUS_4                        25                          67
  CLUS_5                         4                          74
  CLUS_6                         9                          66
  CLUS_7                         4                          14
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(6Q12) MUTATED        8     11     11     10
  AMP PEAK  6(6Q12) WILD-TYPE     45     40     26     55
D6V3, multiclass
        clus
vv       AMP PEAK  6(6Q12) MUTATED AMP PEAK  6(6Q12) WILD-TYPE
  CLUS_1                         8                          45
  CLUS_2                        11                          40
  CLUS_3                        11                          26
  CLUS_4                        10                          55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(6Q12) MUTATED       16     15      9
  AMP PEAK  6(6Q12) WILD-TYPE     60     67     39
D6V4, multiclass
        clus
vv       AMP PEAK  6(6Q12) MUTATED AMP PEAK  6(6Q12) WILD-TYPE
  CLUS_1                        16                          60
  CLUS_2                        15                          67
  CLUS_3                         9                          39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(6Q12) MUTATED       26     35     32
  AMP PEAK  6(6Q12) WILD-TYPE    115    177    129
D6V5, multiclass
        clus
vv       AMP PEAK  6(6Q12) MUTATED AMP PEAK  6(6Q12) WILD-TYPE
  CLUS_1                        26                         115
  CLUS_2                        35                         177
  CLUS_3                        32                         129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(6Q12) MUTATED       31     24     35      3
  AMP PEAK  6(6Q12) WILD-TYPE    145     79    135     62
D6V6, multiclass
        clus
vv       AMP PEAK  6(6Q12) MUTATED AMP PEAK  6(6Q12) WILD-TYPE
  CLUS_1                        31                         145
  CLUS_2                        24                          79
  CLUS_3                        35                         135
  CLUS_4                         3                          62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(6Q12) MUTATED       36     34     25
  AMP PEAK  6(6Q12) WILD-TYPE    185    118    120
D6V7, multiclass
        clus
vv       AMP PEAK  6(6Q12) MUTATED AMP PEAK  6(6Q12) WILD-TYPE
  CLUS_1                        36                         185
  CLUS_2                        34                         118
  CLUS_3                        25                         120
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(6Q12) MUTATED       39     29     27
  AMP PEAK  6(6Q12) WILD-TYPE    151    113    159
D6V8, multiclass
        clus
vv       AMP PEAK  6(6Q12) MUTATED AMP PEAK  6(6Q12) WILD-TYPE
  CLUS_1                        39                         151
  CLUS_2                        29                         113
  CLUS_3                        27                         159
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(6Q12) MUTATED       13     28     18     26      3
  AMP PEAK  6(6Q12) WILD-TYPE     59    112     80     90     44
D6V9, multiclass
        clus
vv       AMP PEAK  6(6Q12) MUTATED AMP PEAK  6(6Q12) WILD-TYPE
  CLUS_1                        13                          59
  CLUS_2                        28                         112
  CLUS_3                        18                          80
  CLUS_4                        26                          90
  CLUS_5                         3                          44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(6Q12) MUTATED       30     40     18
  AMP PEAK  6(6Q12) WILD-TYPE    110    204     71
D6V10, multiclass
        clus
vv       AMP PEAK  6(6Q12) MUTATED AMP PEAK  6(6Q12) WILD-TYPE
  CLUS_1                        30                         110
  CLUS_2                        40                         204
  CLUS_3                        18                          71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = AMP PEAK  7(7P11.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(7P11.2) MUTATED       90     72     41     19
  AMP PEAK  7(7P11.2) WILD-TYPE     65     63    148     24
D7V1, multiclass
        clus
vv       AMP PEAK  7(7P11.2) MUTATED AMP PEAK  7(7P11.2) WILD-TYPE
  CLUS_1                          90                            65
  CLUS_2                          72                            63
  CLUS_3                          41                           148
  CLUS_4                          19                            24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(7P11.2) MUTATED       30     43     52     56      6     24
  AMP PEAK  7(7P11.2) WILD-TYPE     54     36     44     36     72     51
                               vv
clus                            CLUS_7
  AMP PEAK  7(7P11.2) MUTATED       11
  AMP PEAK  7(7P11.2) WILD-TYPE      7
D7V2, multiclass
        clus
vv       AMP PEAK  7(7P11.2) MUTATED AMP PEAK  7(7P11.2) WILD-TYPE
  CLUS_1                          30                            54
  CLUS_2                          43                            36
  CLUS_3                          52                            44
  CLUS_4                          56                            36
  CLUS_5                           6                            72
  CLUS_6                          24                            51
  CLUS_7                          11                             7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(7P11.2) MUTATED       25     25     17     31
  AMP PEAK  7(7P11.2) WILD-TYPE     28     26     20     34
D7V3, multiclass
        clus
vv       AMP PEAK  7(7P11.2) MUTATED AMP PEAK  7(7P11.2) WILD-TYPE
  CLUS_1                          25                            28
  CLUS_2                          25                            26
  CLUS_3                          17                            20
  CLUS_4                          31                            34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(7P11.2) MUTATED       33     41     24
  AMP PEAK  7(7P11.2) WILD-TYPE     43     41     24
D7V4, multiclass
        clus
vv       AMP PEAK  7(7P11.2) MUTATED AMP PEAK  7(7P11.2) WILD-TYPE
  CLUS_1                          33                            43
  CLUS_2                          41                            41
  CLUS_3                          24                            24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(7P11.2) MUTATED       64     76     79
  AMP PEAK  7(7P11.2) WILD-TYPE     77    136     82
D7V5, multiclass
        clus
vv       AMP PEAK  7(7P11.2) MUTATED AMP PEAK  7(7P11.2) WILD-TYPE
  CLUS_1                          64                            77
  CLUS_2                          76                           136
  CLUS_3                          79                            82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(7P11.2) MUTATED       76     57     81      5
  AMP PEAK  7(7P11.2) WILD-TYPE    100     46     89     60
D7V6, multiclass
        clus
vv       AMP PEAK  7(7P11.2) MUTATED AMP PEAK  7(7P11.2) WILD-TYPE
  CLUS_1                          76                           100
  CLUS_2                          57                            46
  CLUS_3                          81                            89
  CLUS_4                           5                            60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(7P11.2) MUTATED       92     60     67
  AMP PEAK  7(7P11.2) WILD-TYPE    129     92     78
D7V7, multiclass
        clus
vv       AMP PEAK  7(7P11.2) MUTATED AMP PEAK  7(7P11.2) WILD-TYPE
  CLUS_1                          92                           129
  CLUS_2                          60                            92
  CLUS_3                          67                            78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(7P11.2) MUTATED       84     83     52
  AMP PEAK  7(7P11.2) WILD-TYPE    106     59    134
D7V8, multiclass
        clus
vv       AMP PEAK  7(7P11.2) MUTATED AMP PEAK  7(7P11.2) WILD-TYPE
  CLUS_1                          84                           106
  CLUS_2                          83                            59
  CLUS_3                          52                           134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(7P11.2) MUTATED       39     62     34     56     10
  AMP PEAK  7(7P11.2) WILD-TYPE     33     78     64     60     37
D7V9, multiclass
        clus
vv       AMP PEAK  7(7P11.2) MUTATED AMP PEAK  7(7P11.2) WILD-TYPE
  CLUS_1                          39                            33
  CLUS_2                          62                            78
  CLUS_3                          34                            64
  CLUS_4                          56                            60
  CLUS_5                          10                            37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(7P11.2) MUTATED       69     94     38
  AMP PEAK  7(7P11.2) WILD-TYPE     71    150     51
D7V10, multiclass
        clus
vv       AMP PEAK  7(7P11.2) MUTATED AMP PEAK  7(7P11.2) WILD-TYPE
  CLUS_1                          69                            71
  CLUS_2                          94                           150
  CLUS_3                          38                            51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = AMP PEAK  8(7Q21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(7Q21.3) MUTATED       52     78     25     14
  AMP PEAK  8(7Q21.3) WILD-TYPE    103     57    164     29
D8V1, multiclass
        clus
vv       AMP PEAK  8(7Q21.3) MUTATED AMP PEAK  8(7Q21.3) WILD-TYPE
  CLUS_1                          52                           103
  CLUS_2                          78                            57
  CLUS_3                          25                           164
  CLUS_4                          14                            29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(7Q21.3) MUTATED       14     35     29     62      9     13
  AMP PEAK  8(7Q21.3) WILD-TYPE     70     44     67     30     69     62
                               vv
clus                            CLUS_7
  AMP PEAK  8(7Q21.3) MUTATED        7
  AMP PEAK  8(7Q21.3) WILD-TYPE     11
D8V2, multiclass
        clus
vv       AMP PEAK  8(7Q21.3) MUTATED AMP PEAK  8(7Q21.3) WILD-TYPE
  CLUS_1                          14                            70
  CLUS_2                          35                            44
  CLUS_3                          29                            67
  CLUS_4                          62                            30
  CLUS_5                           9                            69
  CLUS_6                          13                            62
  CLUS_7                           7                            11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(7Q21.3) MUTATED       22     24     14     20
  AMP PEAK  8(7Q21.3) WILD-TYPE     31     27     23     45
D8V3, multiclass
        clus
vv       AMP PEAK  8(7Q21.3) MUTATED AMP PEAK  8(7Q21.3) WILD-TYPE
  CLUS_1                          22                            31
  CLUS_2                          24                            27
  CLUS_3                          14                            23
  CLUS_4                          20                            45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(7Q21.3) MUTATED       30     35     15
  AMP PEAK  8(7Q21.3) WILD-TYPE     46     47     33
D8V4, multiclass
        clus
vv       AMP PEAK  8(7Q21.3) MUTATED AMP PEAK  8(7Q21.3) WILD-TYPE
  CLUS_1                          30                            46
  CLUS_2                          35                            47
  CLUS_3                          15                            33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(7Q21.3) MUTATED       43     78     46
  AMP PEAK  8(7Q21.3) WILD-TYPE     98    134    115
D8V5, multiclass
        clus
vv       AMP PEAK  8(7Q21.3) MUTATED AMP PEAK  8(7Q21.3) WILD-TYPE
  CLUS_1                          43                            98
  CLUS_2                          78                           134
  CLUS_3                          46                           115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(7Q21.3) MUTATED       47     52     60      8
  AMP PEAK  8(7Q21.3) WILD-TYPE    129     51    110     57
D8V6, multiclass
        clus
vv       AMP PEAK  8(7Q21.3) MUTATED AMP PEAK  8(7Q21.3) WILD-TYPE
  CLUS_1                          47                           129
  CLUS_2                          52                            51
  CLUS_3                          60                           110
  CLUS_4                           8                            57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(7Q21.3) MUTATED       84     43     39
  AMP PEAK  8(7Q21.3) WILD-TYPE    137    109    106
D8V7, multiclass
        clus
vv       AMP PEAK  8(7Q21.3) MUTATED AMP PEAK  8(7Q21.3) WILD-TYPE
  CLUS_1                          84                           137
  CLUS_2                          43                           109
  CLUS_3                          39                           106
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(7Q21.3) MUTATED       56     65     45
  AMP PEAK  8(7Q21.3) WILD-TYPE    134     77    141
D8V8, multiclass
        clus
vv       AMP PEAK  8(7Q21.3) MUTATED AMP PEAK  8(7Q21.3) WILD-TYPE
  CLUS_1                          56                           134
  CLUS_2                          65                            77
  CLUS_3                          45                           141
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(7Q21.3) MUTATED       29     38     37     38      9
  AMP PEAK  8(7Q21.3) WILD-TYPE     43    102     61     78     38
D8V9, multiclass
        clus
vv       AMP PEAK  8(7Q21.3) MUTATED AMP PEAK  8(7Q21.3) WILD-TYPE
  CLUS_1                          29                            43
  CLUS_2                          38                           102
  CLUS_3                          37                            61
  CLUS_4                          38                            78
  CLUS_5                           9                            38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(7Q21.3) MUTATED       47     77     27
  AMP PEAK  8(7Q21.3) WILD-TYPE     93    167     62
D8V10, multiclass
        clus
vv       AMP PEAK  8(7Q21.3) MUTATED AMP PEAK  8(7Q21.3) WILD-TYPE
  CLUS_1                          47                            93
  CLUS_2                          77                           167
  CLUS_3                          27                            62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = AMP PEAK  9(8P11.23) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(8P11.23) MUTATED       34     70     47     10
  AMP PEAK  9(8P11.23) WILD-TYPE    121     65    142     33
D9V1, multiclass
        clus
vv       AMP PEAK  9(8P11.23) MUTATED AMP PEAK  9(8P11.23) WILD-TYPE
  CLUS_1                           34                            121
  CLUS_2                           70                             65
  CLUS_3                           47                            142
  CLUS_4                           10                             33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(8P11.23) MUTATED       19     31     27     36     26     13
  AMP PEAK  9(8P11.23) WILD-TYPE     65     48     69     56     52     62
                                vv
clus                             CLUS_7
  AMP PEAK  9(8P11.23) MUTATED        9
  AMP PEAK  9(8P11.23) WILD-TYPE      9
D9V2, multiclass
        clus
vv       AMP PEAK  9(8P11.23) MUTATED AMP PEAK  9(8P11.23) WILD-TYPE
  CLUS_1                           19                             65
  CLUS_2                           31                             48
  CLUS_3                           27                             69
  CLUS_4                           36                             56
  CLUS_5                           26                             52
  CLUS_6                           13                             62
  CLUS_7                            9                              9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(8P11.23) MUTATED       16     18     10     18
  AMP PEAK  9(8P11.23) WILD-TYPE     37     33     27     47
D9V3, multiclass
        clus
vv       AMP PEAK  9(8P11.23) MUTATED AMP PEAK  9(8P11.23) WILD-TYPE
  CLUS_1                           16                             37
  CLUS_2                           18                             33
  CLUS_3                           10                             27
  CLUS_4                           18                             47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(8P11.23) MUTATED       23     26     13
  AMP PEAK  9(8P11.23) WILD-TYPE     53     56     35
D9V4, multiclass
        clus
vv       AMP PEAK  9(8P11.23) MUTATED AMP PEAK  9(8P11.23) WILD-TYPE
  CLUS_1                           23                             53
  CLUS_2                           26                             56
  CLUS_3                           13                             35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(8P11.23) MUTATED       37     77     46
  AMP PEAK  9(8P11.23) WILD-TYPE    104    135    115
D9V5, multiclass
        clus
vv       AMP PEAK  9(8P11.23) MUTATED AMP PEAK  9(8P11.23) WILD-TYPE
  CLUS_1                           37                            104
  CLUS_2                           77                            135
  CLUS_3                           46                            115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(8P11.23) MUTATED       45     39     54     22
  AMP PEAK  9(8P11.23) WILD-TYPE    131     64    116     43
D9V6, multiclass
        clus
vv       AMP PEAK  9(8P11.23) MUTATED AMP PEAK  9(8P11.23) WILD-TYPE
  CLUS_1                           45                            131
  CLUS_2                           39                             64
  CLUS_3                           54                            116
  CLUS_4                           22                             43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(8P11.23) MUTATED       86     36     37
  AMP PEAK  9(8P11.23) WILD-TYPE    135    116    108
D9V7, multiclass
        clus
vv       AMP PEAK  9(8P11.23) MUTATED AMP PEAK  9(8P11.23) WILD-TYPE
  CLUS_1                           86                            135
  CLUS_2                           36                            116
  CLUS_3                           37                            108
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(8P11.23) MUTATED       47     57     55
  AMP PEAK  9(8P11.23) WILD-TYPE    143     85    131
D9V8, multiclass
        clus
vv       AMP PEAK  9(8P11.23) MUTATED AMP PEAK  9(8P11.23) WILD-TYPE
  CLUS_1                           47                            143
  CLUS_2                           57                             85
  CLUS_3                           55                            131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(8P11.23) MUTATED       22     34     38     35     14
  AMP PEAK  9(8P11.23) WILD-TYPE     50    106     60     81     33
D9V9, multiclass
        clus
vv       AMP PEAK  9(8P11.23) MUTATED AMP PEAK  9(8P11.23) WILD-TYPE
  CLUS_1                           22                             50
  CLUS_2                           34                            106
  CLUS_3                           38                             60
  CLUS_4                           35                             81
  CLUS_5                           14                             33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(8P11.23) MUTATED       36     84     23
  AMP PEAK  9(8P11.23) WILD-TYPE    104    160     66
D9V10, multiclass
        clus
vv       AMP PEAK  9(8P11.23) MUTATED AMP PEAK  9(8P11.23) WILD-TYPE
  CLUS_1                           36                            104
  CLUS_2                           84                            160
  CLUS_3                           23                             66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = AMP PEAK 10(8Q11.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(8Q11.21) MUTATED      117     79     80     34
  AMP PEAK 10(8Q11.21) WILD-TYPE     38     56    109      9
D10V1, multiclass
        clus
vv       AMP PEAK 10(8Q11.21) MUTATED AMP PEAK 10(8Q11.21) WILD-TYPE
  CLUS_1                          117                             38
  CLUS_2                           79                             56
  CLUS_3                           80                            109
  CLUS_4                           34                              9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(8Q11.21) MUTATED       54     43     80     51     29     40
  AMP PEAK 10(8Q11.21) WILD-TYPE     30     36     16     41     49     35
                                vv
clus                             CLUS_7
  AMP PEAK 10(8Q11.21) MUTATED       13
  AMP PEAK 10(8Q11.21) WILD-TYPE      5
D10V2, multiclass
        clus
vv       AMP PEAK 10(8Q11.21) MUTATED AMP PEAK 10(8Q11.21) WILD-TYPE
  CLUS_1                           54                             30
  CLUS_2                           43                             36
  CLUS_3                           80                             16
  CLUS_4                           51                             41
  CLUS_5                           29                             49
  CLUS_6                           40                             35
  CLUS_7                           13                              5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(8Q11.21) MUTATED       31     22     22     43
  AMP PEAK 10(8Q11.21) WILD-TYPE     22     29     15     22
D10V3, multiclass
        clus
vv       AMP PEAK 10(8Q11.21) MUTATED AMP PEAK 10(8Q11.21) WILD-TYPE
  CLUS_1                           31                             22
  CLUS_2                           22                             29
  CLUS_3                           22                             15
  CLUS_4                           43                             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(8Q11.21) MUTATED       41     47     30
  AMP PEAK 10(8Q11.21) WILD-TYPE     35     35     18
D10V4, multiclass
        clus
vv       AMP PEAK 10(8Q11.21) MUTATED AMP PEAK 10(8Q11.21) WILD-TYPE
  CLUS_1                           41                             35
  CLUS_2                           47                             35
  CLUS_3                           30                             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(8Q11.21) MUTATED       98    104    103
  AMP PEAK 10(8Q11.21) WILD-TYPE     43    108     58
D10V5, multiclass
        clus
vv       AMP PEAK 10(8Q11.21) MUTATED AMP PEAK 10(8Q11.21) WILD-TYPE
  CLUS_1                           98                             43
  CLUS_2                          104                            108
  CLUS_3                          103                             58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(8Q11.21) MUTATED      123     51    109     22
  AMP PEAK 10(8Q11.21) WILD-TYPE     53     52     61     43
D10V6, multiclass
        clus
vv       AMP PEAK 10(8Q11.21) MUTATED AMP PEAK 10(8Q11.21) WILD-TYPE
  CLUS_1                          123                             53
  CLUS_2                           51                             52
  CLUS_3                          109                             61
  CLUS_4                           22                             43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(8Q11.21) MUTATED      118     93     97
  AMP PEAK 10(8Q11.21) WILD-TYPE    103     59     48
D10V7, multiclass
        clus
vv       AMP PEAK 10(8Q11.21) MUTATED AMP PEAK 10(8Q11.21) WILD-TYPE
  CLUS_1                          118                            103
  CLUS_2                           93                             59
  CLUS_3                           97                             48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(8Q11.21) MUTATED      129     83     96
  AMP PEAK 10(8Q11.21) WILD-TYPE     61     59     90
D10V8, multiclass
        clus
vv       AMP PEAK 10(8Q11.21) MUTATED AMP PEAK 10(8Q11.21) WILD-TYPE
  CLUS_1                          129                             61
  CLUS_2                           83                             59
  CLUS_3                           96                             90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(8Q11.21) MUTATED       45     92     51     76     16
  AMP PEAK 10(8Q11.21) WILD-TYPE     27     48     47     40     31
D10V9, multiclass
        clus
vv       AMP PEAK 10(8Q11.21) MUTATED AMP PEAK 10(8Q11.21) WILD-TYPE
  CLUS_1                           45                             27
  CLUS_2                           92                             48
  CLUS_3                           51                             47
  CLUS_4                           76                             40
  CLUS_5                           16                             31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(8Q11.21) MUTATED       92    126     62
  AMP PEAK 10(8Q11.21) WILD-TYPE     48    118     27
D10V10, multiclass
        clus
vv       AMP PEAK 10(8Q11.21) MUTATED AMP PEAK 10(8Q11.21) WILD-TYPE
  CLUS_1                           92                             48
  CLUS_2                          126                            118
  CLUS_3                           62                             27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = AMP PEAK 11(8Q24.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(8Q24.21) MUTATED      139    105    105     37
  AMP PEAK 11(8Q24.21) WILD-TYPE     16     30     84      6
D11V1, multiclass
        clus
vv       AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE
  CLUS_1                          139                             16
  CLUS_2                          105                             30
  CLUS_3                          105                             84
  CLUS_4                           37                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(8Q24.21) MUTATED       65     58     87     73     35     51
  AMP PEAK 11(8Q24.21) WILD-TYPE     19     21      9     19     43     24
                                vv
clus                             CLUS_7
  AMP PEAK 11(8Q24.21) MUTATED       17
  AMP PEAK 11(8Q24.21) WILD-TYPE      1
D11V2, multiclass
        clus
vv       AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE
  CLUS_1                           65                             19
  CLUS_2                           58                             21
  CLUS_3                           87                              9
  CLUS_4                           73                             19
  CLUS_5                           35                             43
  CLUS_6                           51                             24
  CLUS_7                           17                              1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(8Q24.21) MUTATED       36     36     26     53
  AMP PEAK 11(8Q24.21) WILD-TYPE     17     15     11     12
D11V3, multiclass
        clus
vv       AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE
  CLUS_1                           36                             17
  CLUS_2                           36                             15
  CLUS_3                           26                             11
  CLUS_4                           53                             12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(8Q24.21) MUTATED       53     64     34
  AMP PEAK 11(8Q24.21) WILD-TYPE     23     18     14
D11V4, multiclass
        clus
vv       AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE
  CLUS_1                           53                             23
  CLUS_2                           64                             18
  CLUS_3                           34                             14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(8Q24.21) MUTATED      116    140    124
  AMP PEAK 11(8Q24.21) WILD-TYPE     25     72     37
D11V5, multiclass
        clus
vv       AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE
  CLUS_1                          116                             25
  CLUS_2                          140                             72
  CLUS_3                          124                             37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(8Q24.21) MUTATED      142     75    136     27
  AMP PEAK 11(8Q24.21) WILD-TYPE     34     28     34     38
D11V6, multiclass
        clus
vv       AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE
  CLUS_1                          142                             34
  CLUS_2                           75                             28
  CLUS_3                          136                             34
  CLUS_4                           27                             38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(8Q24.21) MUTATED      153    114    116
  AMP PEAK 11(8Q24.21) WILD-TYPE     68     38     29
D11V7, multiclass
        clus
vv       AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE
  CLUS_1                          153                             68
  CLUS_2                          114                             38
  CLUS_3                          116                             29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(8Q24.21) MUTATED      154    109    120
  AMP PEAK 11(8Q24.21) WILD-TYPE     36     33     66
D11V8, multiclass
        clus
vv       AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE
  CLUS_1                          154                             36
  CLUS_2                          109                             33
  CLUS_3                          120                             66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(8Q24.21) MUTATED       54    114     68     91     22
  AMP PEAK 11(8Q24.21) WILD-TYPE     18     26     30     25     25
D11V9, multiclass
        clus
vv       AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE
  CLUS_1                           54                             18
  CLUS_2                          114                             26
  CLUS_3                           68                             30
  CLUS_4                           91                             25
  CLUS_5                           22                             25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(8Q24.21) MUTATED      113    165     71
  AMP PEAK 11(8Q24.21) WILD-TYPE     27     79     18
D11V10, multiclass
        clus
vv       AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE
  CLUS_1                          113                             27
  CLUS_2                          165                             79
  CLUS_3                           71                             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = AMP PEAK 12(9P24.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(9P24.1) MUTATED       26     21     41     38
  AMP PEAK 12(9P24.1) WILD-TYPE    129    114    148      5
D12V1, multiclass
        clus
vv       AMP PEAK 12(9P24.1) MUTATED AMP PEAK 12(9P24.1) WILD-TYPE
  CLUS_1                          26                           129
  CLUS_2                          21                           114
  CLUS_3                          41                           148
  CLUS_4                          38                             5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(9P24.1) MUTATED       16      8     21     19     20     39
  AMP PEAK 12(9P24.1) WILD-TYPE     68     71     75     73     58     36
                               vv
clus                            CLUS_7
  AMP PEAK 12(9P24.1) MUTATED        3
  AMP PEAK 12(9P24.1) WILD-TYPE     15
D12V2, multiclass
        clus
vv       AMP PEAK 12(9P24.1) MUTATED AMP PEAK 12(9P24.1) WILD-TYPE
  CLUS_1                          16                            68
  CLUS_2                           8                            71
  CLUS_3                          21                            75
  CLUS_4                          19                            73
  CLUS_5                          20                            58
  CLUS_6                          39                            36
  CLUS_7                           3                            15
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(9P24.1) MUTATED       13     11     15     13
  AMP PEAK 12(9P24.1) WILD-TYPE     40     40     22     52
D12V3, multiclass
        clus
vv       AMP PEAK 12(9P24.1) MUTATED AMP PEAK 12(9P24.1) WILD-TYPE
  CLUS_1                          13                            40
  CLUS_2                          11                            40
  CLUS_3                          15                            22
  CLUS_4                          13                            52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(9P24.1) MUTATED       24     19      9
  AMP PEAK 12(9P24.1) WILD-TYPE     52     63     39
D12V4, multiclass
        clus
vv       AMP PEAK 12(9P24.1) MUTATED AMP PEAK 12(9P24.1) WILD-TYPE
  CLUS_1                          24                            52
  CLUS_2                          19                            63
  CLUS_3                           9                            39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(9P24.1) MUTATED       31     40     51
  AMP PEAK 12(9P24.1) WILD-TYPE    110    172    110
D12V5, multiclass
        clus
vv       AMP PEAK 12(9P24.1) MUTATED AMP PEAK 12(9P24.1) WILD-TYPE
  CLUS_1                          31                           110
  CLUS_2                          40                           172
  CLUS_3                          51                           110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(9P24.1) MUTATED       40     17     54     11
  AMP PEAK 12(9P24.1) WILD-TYPE    136     86    116     54
D12V6, multiclass
        clus
vv       AMP PEAK 12(9P24.1) MUTATED AMP PEAK 12(9P24.1) WILD-TYPE
  CLUS_1                          40                           136
  CLUS_2                          17                            86
  CLUS_3                          54                           116
  CLUS_4                          11                            54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(9P24.1) MUTATED       46     47     33
  AMP PEAK 12(9P24.1) WILD-TYPE    175    105    112
D12V7, multiclass
        clus
vv       AMP PEAK 12(9P24.1) MUTATED AMP PEAK 12(9P24.1) WILD-TYPE
  CLUS_1                          46                           175
  CLUS_2                          47                           105
  CLUS_3                          33                           112
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(9P24.1) MUTATED       43     22     61
  AMP PEAK 12(9P24.1) WILD-TYPE    147    120    125
D12V8, multiclass
        clus
vv       AMP PEAK 12(9P24.1) MUTATED AMP PEAK 12(9P24.1) WILD-TYPE
  CLUS_1                          43                           147
  CLUS_2                          22                           120
  CLUS_3                          61                           125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(9P24.1) MUTATED       11     47     12     36     14
  AMP PEAK 12(9P24.1) WILD-TYPE     61     93     86     80     33
D12V9, multiclass
        clus
vv       AMP PEAK 12(9P24.1) MUTATED AMP PEAK 12(9P24.1) WILD-TYPE
  CLUS_1                          11                            61
  CLUS_2                          47                            93
  CLUS_3                          12                            86
  CLUS_4                          36                            80
  CLUS_5                          14                            33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(9P24.1) MUTATED       25     68     27
  AMP PEAK 12(9P24.1) WILD-TYPE    115    176     62
D12V10, multiclass
        clus
vv       AMP PEAK 12(9P24.1) MUTATED AMP PEAK 12(9P24.1) WILD-TYPE
  CLUS_1                          25                           115
  CLUS_2                          68                           176
  CLUS_3                          27                            62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = AMP PEAK 13(9P23) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(9P23) MUTATED       23     23     40     38
  AMP PEAK 13(9P23) WILD-TYPE    132    112    149      5
D13V1, multiclass
        clus
vv       AMP PEAK 13(9P23) MUTATED AMP PEAK 13(9P23) WILD-TYPE
  CLUS_1                        23                         132
  CLUS_2                        23                         112
  CLUS_3                        40                         149
  CLUS_4                        38                           5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 13(9P23) MUTATED       17      7     20     20     19     38      3
  AMP PEAK 13(9P23) WILD-TYPE     67     72     76     72     59     37     15
D13V2, multiclass
        clus
vv       AMP PEAK 13(9P23) MUTATED AMP PEAK 13(9P23) WILD-TYPE
  CLUS_1                        17                          67
  CLUS_2                         7                          72
  CLUS_3                        20                          76
  CLUS_4                        20                          72
  CLUS_5                        19                          59
  CLUS_6                        38                          37
  CLUS_7                         3                          15
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(9P23) MUTATED       13     12     14     15
  AMP PEAK 13(9P23) WILD-TYPE     40     39     23     50
D13V3, multiclass
        clus
vv       AMP PEAK 13(9P23) MUTATED AMP PEAK 13(9P23) WILD-TYPE
  CLUS_1                        13                          40
  CLUS_2                        12                          39
  CLUS_3                        14                          23
  CLUS_4                        15                          50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(9P23) MUTATED       22     23      9
  AMP PEAK 13(9P23) WILD-TYPE     54     59     39
D13V4, multiclass
        clus
vv       AMP PEAK 13(9P23) MUTATED AMP PEAK 13(9P23) WILD-TYPE
  CLUS_1                        22                          54
  CLUS_2                        23                          59
  CLUS_3                         9                          39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(9P23) MUTATED       34     38     49
  AMP PEAK 13(9P23) WILD-TYPE    107    174    112
D13V5, multiclass
        clus
vv       AMP PEAK 13(9P23) MUTATED AMP PEAK 13(9P23) WILD-TYPE
  CLUS_1                        34                         107
  CLUS_2                        38                         174
  CLUS_3                        49                         112
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(9P23) MUTATED       42     16     52     11
  AMP PEAK 13(9P23) WILD-TYPE    134     87    118     54
D13V6, multiclass
        clus
vv       AMP PEAK 13(9P23) MUTATED AMP PEAK 13(9P23) WILD-TYPE
  CLUS_1                        42                         134
  CLUS_2                        16                          87
  CLUS_3                        52                         118
  CLUS_4                        11                          54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(9P23) MUTATED       43     45     36
  AMP PEAK 13(9P23) WILD-TYPE    178    107    109
D13V7, multiclass
        clus
vv       AMP PEAK 13(9P23) MUTATED AMP PEAK 13(9P23) WILD-TYPE
  CLUS_1                        43                         178
  CLUS_2                        45                         107
  CLUS_3                        36                         109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(9P23) MUTATED       45     21     58
  AMP PEAK 13(9P23) WILD-TYPE    145    121    128
D13V8, multiclass
        clus
vv       AMP PEAK 13(9P23) MUTATED AMP PEAK 13(9P23) WILD-TYPE
  CLUS_1                        45                         145
  CLUS_2                        21                         121
  CLUS_3                        58                         128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(9P23) MUTATED       12     47     12     32     13
  AMP PEAK 13(9P23) WILD-TYPE     60     93     86     84     34
D13V9, multiclass
        clus
vv       AMP PEAK 13(9P23) MUTATED AMP PEAK 13(9P23) WILD-TYPE
  CLUS_1                        12                          60
  CLUS_2                        47                          93
  CLUS_3                        12                          86
  CLUS_4                        32                          84
  CLUS_5                        13                          34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(9P23) MUTATED       27     64     25
  AMP PEAK 13(9P23) WILD-TYPE    113    180     64
D13V10, multiclass
        clus
vv       AMP PEAK 13(9P23) MUTATED AMP PEAK 13(9P23) WILD-TYPE
  CLUS_1                        27                         113
  CLUS_2                        64                         180
  CLUS_3                        25                          64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = AMP PEAK 14(9P13.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(9P13.3) MUTATED       37     31     36     35
  AMP PEAK 14(9P13.3) WILD-TYPE    118    104    153      8
D14V1, multiclass
        clus
vv       AMP PEAK 14(9P13.3) MUTATED AMP PEAK 14(9P13.3) WILD-TYPE
  CLUS_1                          37                           118
  CLUS_2                          31                           104
  CLUS_3                          36                           153
  CLUS_4                          35                             8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 14(9P13.3) MUTATED       19     15     27     25     14     35
  AMP PEAK 14(9P13.3) WILD-TYPE     65     64     69     67     64     40
                               vv
clus                            CLUS_7
  AMP PEAK 14(9P13.3) MUTATED        4
  AMP PEAK 14(9P13.3) WILD-TYPE     14
D14V2, multiclass
        clus
vv       AMP PEAK 14(9P13.3) MUTATED AMP PEAK 14(9P13.3) WILD-TYPE
  CLUS_1                          19                            65
  CLUS_2                          15                            64
  CLUS_3                          27                            69
  CLUS_4                          25                            67
  CLUS_5                          14                            64
  CLUS_6                          35                            40
  CLUS_7                           4                            14
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(9P13.3) MUTATED       15     13     15     19
  AMP PEAK 14(9P13.3) WILD-TYPE     38     38     22     46
D14V3, multiclass
        clus
vv       AMP PEAK 14(9P13.3) MUTATED AMP PEAK 14(9P13.3) WILD-TYPE
  CLUS_1                          15                            38
  CLUS_2                          13                            38
  CLUS_3                          15                            22
  CLUS_4                          19                            46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(9P13.3) MUTATED       27     26      9
  AMP PEAK 14(9P13.3) WILD-TYPE     49     56     39
D14V4, multiclass
        clus
vv       AMP PEAK 14(9P13.3) MUTATED AMP PEAK 14(9P13.3) WILD-TYPE
  CLUS_1                          27                            49
  CLUS_2                          26                            56
  CLUS_3                           9                            39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(9P13.3) MUTATED       43     39     54
  AMP PEAK 14(9P13.3) WILD-TYPE     98    173    107
D14V5, multiclass
        clus
vv       AMP PEAK 14(9P13.3) MUTATED AMP PEAK 14(9P13.3) WILD-TYPE
  CLUS_1                          43                            98
  CLUS_2                          39                           173
  CLUS_3                          54                           107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(9P13.3) MUTATED       51     24     55      6
  AMP PEAK 14(9P13.3) WILD-TYPE    125     79    115     59
D14V6, multiclass
        clus
vv       AMP PEAK 14(9P13.3) MUTATED AMP PEAK 14(9P13.3) WILD-TYPE
  CLUS_1                          51                           125
  CLUS_2                          24                            79
  CLUS_3                          55                           115
  CLUS_4                           6                            59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(9P13.3) MUTATED       45     47     47
  AMP PEAK 14(9P13.3) WILD-TYPE    176    105     98
D14V7, multiclass
        clus
vv       AMP PEAK 14(9P13.3) MUTATED AMP PEAK 14(9P13.3) WILD-TYPE
  CLUS_1                          45                           176
  CLUS_2                          47                           105
  CLUS_3                          47                            98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(9P13.3) MUTATED       59     28     52
  AMP PEAK 14(9P13.3) WILD-TYPE    131    114    134
D14V8, multiclass
        clus
vv       AMP PEAK 14(9P13.3) MUTATED AMP PEAK 14(9P13.3) WILD-TYPE
  CLUS_1                          59                           131
  CLUS_2                          28                           114
  CLUS_3                          52                           134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(9P13.3) MUTATED       17     45     18     40     10
  AMP PEAK 14(9P13.3) WILD-TYPE     55     95     80     76     37
D14V9, multiclass
        clus
vv       AMP PEAK 14(9P13.3) MUTATED AMP PEAK 14(9P13.3) WILD-TYPE
  CLUS_1                          17                            55
  CLUS_2                          45                            95
  CLUS_3                          18                            80
  CLUS_4                          40                            76
  CLUS_5                          10                            37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(9P13.3) MUTATED       43     61     26
  AMP PEAK 14(9P13.3) WILD-TYPE     97    183     63
D14V10, multiclass
        clus
vv       AMP PEAK 14(9P13.3) MUTATED AMP PEAK 14(9P13.3) WILD-TYPE
  CLUS_1                          43                            97
  CLUS_2                          61                           183
  CLUS_3                          26                            63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = AMP PEAK 15(9Q34.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(9Q34.3) MUTATED       42     57     43     35
  AMP PEAK 15(9Q34.3) WILD-TYPE    113     78    146      8
D15V1, multiclass
        clus
vv       AMP PEAK 15(9Q34.3) MUTATED AMP PEAK 15(9Q34.3) WILD-TYPE
  CLUS_1                          42                           113
  CLUS_2                          57                            78
  CLUS_3                          43                           146
  CLUS_4                          35                             8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 15(9Q34.3) MUTATED       21     21     31     38     22     36
  AMP PEAK 15(9Q34.3) WILD-TYPE     63     58     65     54     56     39
                               vv
clus                            CLUS_7
  AMP PEAK 15(9Q34.3) MUTATED        8
  AMP PEAK 15(9Q34.3) WILD-TYPE     10
D15V2, multiclass
        clus
vv       AMP PEAK 15(9Q34.3) MUTATED AMP PEAK 15(9Q34.3) WILD-TYPE
  CLUS_1                          21                            63
  CLUS_2                          21                            58
  CLUS_3                          31                            65
  CLUS_4                          38                            54
  CLUS_5                          22                            56
  CLUS_6                          36                            39
  CLUS_7                           8                            10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(9Q34.3) MUTATED       20     20     19     20
  AMP PEAK 15(9Q34.3) WILD-TYPE     33     31     18     45
D15V3, multiclass
        clus
vv       AMP PEAK 15(9Q34.3) MUTATED AMP PEAK 15(9Q34.3) WILD-TYPE
  CLUS_1                          20                            33
  CLUS_2                          20                            31
  CLUS_3                          19                            18
  CLUS_4                          20                            45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(9Q34.3) MUTATED       36     32     11
  AMP PEAK 15(9Q34.3) WILD-TYPE     40     50     37
D15V4, multiclass
        clus
vv       AMP PEAK 15(9Q34.3) MUTATED AMP PEAK 15(9Q34.3) WILD-TYPE
  CLUS_1                          36                            40
  CLUS_2                          32                            50
  CLUS_3                          11                            37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(9Q34.3) MUTATED       49     68     57
  AMP PEAK 15(9Q34.3) WILD-TYPE     92    144    104
D15V5, multiclass
        clus
vv       AMP PEAK 15(9Q34.3) MUTATED AMP PEAK 15(9Q34.3) WILD-TYPE
  CLUS_1                          49                            92
  CLUS_2                          68                           144
  CLUS_3                          57                           104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(9Q34.3) MUTATED       60     33     70     11
  AMP PEAK 15(9Q34.3) WILD-TYPE    116     70    100     54
D15V6, multiclass
        clus
vv       AMP PEAK 15(9Q34.3) MUTATED AMP PEAK 15(9Q34.3) WILD-TYPE
  CLUS_1                          60                           116
  CLUS_2                          33                            70
  CLUS_3                          70                           100
  CLUS_4                          11                            54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(9Q34.3) MUTATED       70     56     50
  AMP PEAK 15(9Q34.3) WILD-TYPE    151     96     95
D15V7, multiclass
        clus
vv       AMP PEAK 15(9Q34.3) MUTATED AMP PEAK 15(9Q34.3) WILD-TYPE
  CLUS_1                          70                           151
  CLUS_2                          56                            96
  CLUS_3                          50                            95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(9Q34.3) MUTATED       67     38     71
  AMP PEAK 15(9Q34.3) WILD-TYPE    123    104    115
D15V8, multiclass
        clus
vv       AMP PEAK 15(9Q34.3) MUTATED AMP PEAK 15(9Q34.3) WILD-TYPE
  CLUS_1                          67                           123
  CLUS_2                          38                           104
  CLUS_3                          71                           115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(9Q34.3) MUTATED       25     50     28     44     14
  AMP PEAK 15(9Q34.3) WILD-TYPE     47     90     70     72     33
D15V9, multiclass
        clus
vv       AMP PEAK 15(9Q34.3) MUTATED AMP PEAK 15(9Q34.3) WILD-TYPE
  CLUS_1                          25                            47
  CLUS_2                          50                            90
  CLUS_3                          28                            70
  CLUS_4                          44                            72
  CLUS_5                          14                            33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(9Q34.3) MUTATED       48     77     36
  AMP PEAK 15(9Q34.3) WILD-TYPE     92    167     53
D15V10, multiclass
        clus
vv       AMP PEAK 15(9Q34.3) MUTATED AMP PEAK 15(9Q34.3) WILD-TYPE
  CLUS_1                          48                            92
  CLUS_2                          77                           167
  CLUS_3                          36                            53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = AMP PEAK 16(11P13) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(11P13) MUTATED       43     22     25     12
  AMP PEAK 16(11P13) WILD-TYPE    112    113    164     31
D16V1, multiclass
        clus
vv       AMP PEAK 16(11P13) MUTATED AMP PEAK 16(11P13) WILD-TYPE
  CLUS_1                         43                          112
  CLUS_2                         22                          113
  CLUS_3                         25                          164
  CLUS_4                         12                           31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 16(11P13) MUTATED        9      9     30     24      9     16      5
  AMP PEAK 16(11P13) WILD-TYPE     75     70     66     68     69     59     13
D16V2, multiclass
        clus
vv       AMP PEAK 16(11P13) MUTATED AMP PEAK 16(11P13) WILD-TYPE
  CLUS_1                          9                           75
  CLUS_2                          9                           70
  CLUS_3                         30                           66
  CLUS_4                         24                           68
  CLUS_5                          9                           69
  CLUS_6                         16                           59
  CLUS_7                          5                           13
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(11P13) MUTATED       15      9      6     12
  AMP PEAK 16(11P13) WILD-TYPE     38     42     31     53
D16V3, multiclass
        clus
vv       AMP PEAK 16(11P13) MUTATED AMP PEAK 16(11P13) WILD-TYPE
  CLUS_1                         15                           38
  CLUS_2                          9                           42
  CLUS_3                          6                           31
  CLUS_4                         12                           53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(11P13) MUTATED       20     12     10
  AMP PEAK 16(11P13) WILD-TYPE     56     70     38
D16V4, multiclass
        clus
vv       AMP PEAK 16(11P13) MUTATED AMP PEAK 16(11P13) WILD-TYPE
  CLUS_1                         20                           56
  CLUS_2                         12                           70
  CLUS_3                         10                           38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(11P13) MUTATED       29     41     30
  AMP PEAK 16(11P13) WILD-TYPE    112    171    131
D16V5, multiclass
        clus
vv       AMP PEAK 16(11P13) MUTATED AMP PEAK 16(11P13) WILD-TYPE
  CLUS_1                         29                          112
  CLUS_2                         41                          171
  CLUS_3                         30                          131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(11P13) MUTATED       39     16     34     11
  AMP PEAK 16(11P13) WILD-TYPE    137     87    136     54
D16V6, multiclass
        clus
vv       AMP PEAK 16(11P13) MUTATED AMP PEAK 16(11P13) WILD-TYPE
  CLUS_1                         39                          137
  CLUS_2                         16                           87
  CLUS_3                         34                          136
  CLUS_4                         11                           54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(11P13) MUTATED       39     31     29
  AMP PEAK 16(11P13) WILD-TYPE    182    121    116
D16V7, multiclass
        clus
vv       AMP PEAK 16(11P13) MUTATED AMP PEAK 16(11P13) WILD-TYPE
  CLUS_1                         39                          182
  CLUS_2                         31                          121
  CLUS_3                         29                          116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(11P13) MUTATED       41     27     31
  AMP PEAK 16(11P13) WILD-TYPE    149    115    155
D16V8, multiclass
        clus
vv       AMP PEAK 16(11P13) MUTATED AMP PEAK 16(11P13) WILD-TYPE
  CLUS_1                         41                          149
  CLUS_2                         27                          115
  CLUS_3                         31                          155
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(11P13) MUTATED        6     35     13     30      8
  AMP PEAK 16(11P13) WILD-TYPE     66    105     85     86     39
D16V9, multiclass
        clus
vv       AMP PEAK 16(11P13) MUTATED AMP PEAK 16(11P13) WILD-TYPE
  CLUS_1                          6                           66
  CLUS_2                         35                          105
  CLUS_3                         13                           85
  CLUS_4                         30                           86
  CLUS_5                          8                           39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(11P13) MUTATED       24     44     24
  AMP PEAK 16(11P13) WILD-TYPE    116    200     65
D16V10, multiclass
        clus
vv       AMP PEAK 16(11P13) MUTATED AMP PEAK 16(11P13) WILD-TYPE
  CLUS_1                         24                          116
  CLUS_2                         44                          200
  CLUS_3                         24                           65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = AMP PEAK 17(11Q13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(11Q13.3) MUTATED       90     85     37     17
  AMP PEAK 17(11Q13.3) WILD-TYPE     65     50    152     26
D17V1, multiclass
        clus
vv       AMP PEAK 17(11Q13.3) MUTATED AMP PEAK 17(11Q13.3) WILD-TYPE
  CLUS_1                           90                             65
  CLUS_2                           85                             50
  CLUS_3                           37                            152
  CLUS_4                           17                             26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 17(11Q13.3) MUTATED       31     31     62     55     15     21
  AMP PEAK 17(11Q13.3) WILD-TYPE     53     48     34     37     63     54
                                vv
clus                             CLUS_7
  AMP PEAK 17(11Q13.3) MUTATED       14
  AMP PEAK 17(11Q13.3) WILD-TYPE      4
D17V2, multiclass
        clus
vv       AMP PEAK 17(11Q13.3) MUTATED AMP PEAK 17(11Q13.3) WILD-TYPE
  CLUS_1                           31                             53
  CLUS_2                           31                             48
  CLUS_3                           62                             34
  CLUS_4                           55                             37
  CLUS_5                           15                             63
  CLUS_6                           21                             54
  CLUS_7                           14                              4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(11Q13.3) MUTATED       26     25     15     32
  AMP PEAK 17(11Q13.3) WILD-TYPE     27     26     22     33
D17V3, multiclass
        clus
vv       AMP PEAK 17(11Q13.3) MUTATED AMP PEAK 17(11Q13.3) WILD-TYPE
  CLUS_1                           26                             27
  CLUS_2                           25                             26
  CLUS_3                           15                             22
  CLUS_4                           32                             33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(11Q13.3) MUTATED       39     37     22
  AMP PEAK 17(11Q13.3) WILD-TYPE     37     45     26
D17V4, multiclass
        clus
vv       AMP PEAK 17(11Q13.3) MUTATED AMP PEAK 17(11Q13.3) WILD-TYPE
  CLUS_1                           39                             37
  CLUS_2                           37                             45
  CLUS_3                           22                             26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(11Q13.3) MUTATED       69     87     71
  AMP PEAK 17(11Q13.3) WILD-TYPE     72    125     90
D17V5, multiclass
        clus
vv       AMP PEAK 17(11Q13.3) MUTATED AMP PEAK 17(11Q13.3) WILD-TYPE
  CLUS_1                           69                             72
  CLUS_2                           87                            125
  CLUS_3                           71                             90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(11Q13.3) MUTATED       82     42     84     19
  AMP PEAK 17(11Q13.3) WILD-TYPE     94     61     86     46
D17V6, multiclass
        clus
vv       AMP PEAK 17(11Q13.3) MUTATED AMP PEAK 17(11Q13.3) WILD-TYPE
  CLUS_1                           82                             94
  CLUS_2                           42                             61
  CLUS_3                           84                             86
  CLUS_4                           19                             46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(11Q13.3) MUTATED       93     68     66
  AMP PEAK 17(11Q13.3) WILD-TYPE    128     84     79
D17V7, multiclass
        clus
vv       AMP PEAK 17(11Q13.3) MUTATED AMP PEAK 17(11Q13.3) WILD-TYPE
  CLUS_1                           93                            128
  CLUS_2                           68                             84
  CLUS_3                           66                             79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(11Q13.3) MUTATED       91     72     64
  AMP PEAK 17(11Q13.3) WILD-TYPE     99     70    122
D17V8, multiclass
        clus
vv       AMP PEAK 17(11Q13.3) MUTATED AMP PEAK 17(11Q13.3) WILD-TYPE
  CLUS_1                           91                             99
  CLUS_2                           72                             70
  CLUS_3                           64                            122
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(11Q13.3) MUTATED       30     67     36     62     10
  AMP PEAK 17(11Q13.3) WILD-TYPE     42     73     62     54     37
D17V9, multiclass
        clus
vv       AMP PEAK 17(11Q13.3) MUTATED AMP PEAK 17(11Q13.3) WILD-TYPE
  CLUS_1                           30                             42
  CLUS_2                           67                             73
  CLUS_3                           36                             62
  CLUS_4                           62                             54
  CLUS_5                           10                             37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(11Q13.3) MUTATED       61     96     48
  AMP PEAK 17(11Q13.3) WILD-TYPE     79    148     41
D17V10, multiclass
        clus
vv       AMP PEAK 17(11Q13.3) MUTATED AMP PEAK 17(11Q13.3) WILD-TYPE
  CLUS_1                           61                             79
  CLUS_2                           96                            148
  CLUS_3                           48                             41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = AMP PEAK 18(12P13.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(12P13.33) MUTATED       60     70     22     15
  AMP PEAK 18(12P13.33) WILD-TYPE     95     65    167     28
D18V1, multiclass
        clus
vv       AMP PEAK 18(12P13.33) MUTATED AMP PEAK 18(12P13.33) WILD-TYPE
  CLUS_1                            60                              95
  CLUS_2                            70                              65
  CLUS_3                            22                             167
  CLUS_4                            15                              28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 18(12P13.33) MUTATED       14     36     33     46     23     11
  AMP PEAK 18(12P13.33) WILD-TYPE     70     43     63     46     55     64
                                 vv
clus                              CLUS_7
  AMP PEAK 18(12P13.33) MUTATED        4
  AMP PEAK 18(12P13.33) WILD-TYPE     14
D18V2, multiclass
        clus
vv       AMP PEAK 18(12P13.33) MUTATED AMP PEAK 18(12P13.33) WILD-TYPE
  CLUS_1                            14                              70
  CLUS_2                            36                              43
  CLUS_3                            33                              63
  CLUS_4                            46                              46
  CLUS_5                            23                              55
  CLUS_6                            11                              64
  CLUS_7                             4                              14
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(12P13.33) MUTATED       23     23     12     15
  AMP PEAK 18(12P13.33) WILD-TYPE     30     28     25     50
D18V3, multiclass
        clus
vv       AMP PEAK 18(12P13.33) MUTATED AMP PEAK 18(12P13.33) WILD-TYPE
  CLUS_1                            23                              30
  CLUS_2                            23                              28
  CLUS_3                            12                              25
  CLUS_4                            15                              50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(12P13.33) MUTATED       30     29     14
  AMP PEAK 18(12P13.33) WILD-TYPE     46     53     34
D18V4, multiclass
        clus
vv       AMP PEAK 18(12P13.33) MUTATED AMP PEAK 18(12P13.33) WILD-TYPE
  CLUS_1                            30                              46
  CLUS_2                            29                              53
  CLUS_3                            14                              34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(12P13.33) MUTATED       49     81     36
  AMP PEAK 18(12P13.33) WILD-TYPE     92    131    125
D18V5, multiclass
        clus
vv       AMP PEAK 18(12P13.33) MUTATED AMP PEAK 18(12P13.33) WILD-TYPE
  CLUS_1                            49                              92
  CLUS_2                            81                             131
  CLUS_3                            36                             125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(12P13.33) MUTATED       61     50     39     16
  AMP PEAK 18(12P13.33) WILD-TYPE    115     53    131     49
D18V6, multiclass
        clus
vv       AMP PEAK 18(12P13.33) MUTATED AMP PEAK 18(12P13.33) WILD-TYPE
  CLUS_1                            61                             115
  CLUS_2                            50                              53
  CLUS_3                            39                             131
  CLUS_4                            16                              49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(12P13.33) MUTATED       84     32     50
  AMP PEAK 18(12P13.33) WILD-TYPE    137    120     95
D18V7, multiclass
        clus
vv       AMP PEAK 18(12P13.33) MUTATED AMP PEAK 18(12P13.33) WILD-TYPE
  CLUS_1                            84                             137
  CLUS_2                            32                             120
  CLUS_3                            50                              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(12P13.33) MUTATED       64     53     49
  AMP PEAK 18(12P13.33) WILD-TYPE    126     89    137
D18V8, multiclass
        clus
vv       AMP PEAK 18(12P13.33) MUTATED AMP PEAK 18(12P13.33) WILD-TYPE
  CLUS_1                            64                             126
  CLUS_2                            53                              89
  CLUS_3                            49                             137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(12P13.33) MUTATED       30     33     44     33     11
  AMP PEAK 18(12P13.33) WILD-TYPE     42    107     54     83     36
D18V9, multiclass
        clus
vv       AMP PEAK 18(12P13.33) MUTATED AMP PEAK 18(12P13.33) WILD-TYPE
  CLUS_1                            30                              42
  CLUS_2                            33                             107
  CLUS_3                            44                              54
  CLUS_4                            33                              83
  CLUS_5                            11                              36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(12P13.33) MUTATED       48     80     23
  AMP PEAK 18(12P13.33) WILD-TYPE     92    164     66
D18V10, multiclass
        clus
vv       AMP PEAK 18(12P13.33) MUTATED AMP PEAK 18(12P13.33) WILD-TYPE
  CLUS_1                            48                              92
  CLUS_2                            80                             164
  CLUS_3                            23                              66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = AMP PEAK 19(12Q15) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(12Q15) MUTATED       34     40     17     12
  AMP PEAK 19(12Q15) WILD-TYPE    121     95    172     31
D19V1, multiclass
        clus
vv       AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  CLUS_1                         34                          121
  CLUS_2                         40                           95
  CLUS_3                         17                          172
  CLUS_4                         12                           31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 19(12Q15) MUTATED        8     21     22     30     13      7      2
  AMP PEAK 19(12Q15) WILD-TYPE     76     58     74     62     65     68     16
D19V2, multiclass
        clus
vv       AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  CLUS_1                          8                           76
  CLUS_2                         21                           58
  CLUS_3                         22                           74
  CLUS_4                         30                           62
  CLUS_5                         13                           65
  CLUS_6                          7                           68
  CLUS_7                          2                           16
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(12Q15) MUTATED       12     18      6     10
  AMP PEAK 19(12Q15) WILD-TYPE     41     33     31     55
D19V3, multiclass
        clus
vv       AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  CLUS_1                         12                           41
  CLUS_2                         18                           33
  CLUS_3                          6                           31
  CLUS_4                         10                           55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(12Q15) MUTATED       16     23      7
  AMP PEAK 19(12Q15) WILD-TYPE     60     59     41
D19V4, multiclass
        clus
vv       AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  CLUS_1                         16                           60
  CLUS_2                         23                           59
  CLUS_3                          7                           41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(12Q15) MUTATED       27     51     24
  AMP PEAK 19(12Q15) WILD-TYPE    114    161    137
D19V5, multiclass
        clus
vv       AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  CLUS_1                         27                          114
  CLUS_2                         51                          161
  CLUS_3                         24                          137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(12Q15) MUTATED       35     34     25      8
  AMP PEAK 19(12Q15) WILD-TYPE    141     69    145     57
D19V6, multiclass
        clus
vv       AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  CLUS_1                         35                          141
  CLUS_2                         34                           69
  CLUS_3                         25                          145
  CLUS_4                          8                           57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(12Q15) MUTATED       46     27     30
  AMP PEAK 19(12Q15) WILD-TYPE    175    125    115
D19V7, multiclass
        clus
vv       AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  CLUS_1                         46                          175
  CLUS_2                         27                          125
  CLUS_3                         30                          115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(12Q15) MUTATED       39     33     31
  AMP PEAK 19(12Q15) WILD-TYPE    151    109    155
D19V8, multiclass
        clus
vv       AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  CLUS_1                         39                          151
  CLUS_2                         33                          109
  CLUS_3                         31                          155
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(12Q15) MUTATED       16     29     19     21     10
  AMP PEAK 19(12Q15) WILD-TYPE     56    111     79     95     37
D19V9, multiclass
        clus
vv       AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  CLUS_1                         16                           56
  CLUS_2                         29                          111
  CLUS_3                         19                           79
  CLUS_4                         21                           95
  CLUS_5                         10                           37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(12Q15) MUTATED       30     52     13
  AMP PEAK 19(12Q15) WILD-TYPE    110    192     76
D19V10, multiclass
        clus
vv       AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  CLUS_1                         30                          110
  CLUS_2                         52                          192
  CLUS_3                         13                           76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = AMP PEAK 20(13Q22.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(13Q22.1) MUTATED       61     27     14      3
  AMP PEAK 20(13Q22.1) WILD-TYPE     94    108    175     40
D20V1, multiclass
        clus
vv       AMP PEAK 20(13Q22.1) MUTATED AMP PEAK 20(13Q22.1) WILD-TYPE
  CLUS_1                           61                             94
  CLUS_2                           27                            108
  CLUS_3                           14                            175
  CLUS_4                            3                             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 20(13Q22.1) MUTATED        8     20     35     18     12      5
  AMP PEAK 20(13Q22.1) WILD-TYPE     76     59     61     74     66     70
                                vv
clus                             CLUS_7
  AMP PEAK 20(13Q22.1) MUTATED        7
  AMP PEAK 20(13Q22.1) WILD-TYPE     11
D20V2, multiclass
        clus
vv       AMP PEAK 20(13Q22.1) MUTATED AMP PEAK 20(13Q22.1) WILD-TYPE
  CLUS_1                            8                             76
  CLUS_2                           20                             59
  CLUS_3                           35                             61
  CLUS_4                           18                             74
  CLUS_5                           12                             66
  CLUS_6                            5                             70
  CLUS_7                            7                             11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(13Q22.1) MUTATED       13     16      4     16
  AMP PEAK 20(13Q22.1) WILD-TYPE     40     35     33     49
D20V3, multiclass
        clus
vv       AMP PEAK 20(13Q22.1) MUTATED AMP PEAK 20(13Q22.1) WILD-TYPE
  CLUS_1                           13                             40
  CLUS_2                           16                             35
  CLUS_3                            4                             33
  CLUS_4                           16                             49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(13Q22.1) MUTATED       18     24      7
  AMP PEAK 20(13Q22.1) WILD-TYPE     58     58     41
D20V4, multiclass
        clus
vv       AMP PEAK 20(13Q22.1) MUTATED AMP PEAK 20(13Q22.1) WILD-TYPE
  CLUS_1                           18                             58
  CLUS_2                           24                             58
  CLUS_3                            7                             41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(13Q22.1) MUTATED       32     33     38
  AMP PEAK 20(13Q22.1) WILD-TYPE    109    179    123
D20V5, multiclass
        clus
vv       AMP PEAK 20(13Q22.1) MUTATED AMP PEAK 20(13Q22.1) WILD-TYPE
  CLUS_1                           32                            109
  CLUS_2                           33                            179
  CLUS_3                           38                            123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(13Q22.1) MUTATED       44     23     28      8
  AMP PEAK 20(13Q22.1) WILD-TYPE    132     80    142     57
D20V6, multiclass
        clus
vv       AMP PEAK 20(13Q22.1) MUTATED AMP PEAK 20(13Q22.1) WILD-TYPE
  CLUS_1                           44                            132
  CLUS_2                           23                             80
  CLUS_3                           28                            142
  CLUS_4                            8                             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(13Q22.1) MUTATED       41     26     36
  AMP PEAK 20(13Q22.1) WILD-TYPE    180    126    109
D20V7, multiclass
        clus
vv       AMP PEAK 20(13Q22.1) MUTATED AMP PEAK 20(13Q22.1) WILD-TYPE
  CLUS_1                           41                            180
  CLUS_2                           26                            126
  CLUS_3                           36                            109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(13Q22.1) MUTATED       44     30     29
  AMP PEAK 20(13Q22.1) WILD-TYPE    146    112    157
D20V8, multiclass
        clus
vv       AMP PEAK 20(13Q22.1) MUTATED AMP PEAK 20(13Q22.1) WILD-TYPE
  CLUS_1                           44                            146
  CLUS_2                           30                            112
  CLUS_3                           29                            157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(13Q22.1) MUTATED        9     31     15     32      4
  AMP PEAK 20(13Q22.1) WILD-TYPE     63    109     83     84     43
D20V9, multiclass
        clus
vv       AMP PEAK 20(13Q22.1) MUTATED AMP PEAK 20(13Q22.1) WILD-TYPE
  CLUS_1                            9                             63
  CLUS_2                           31                            109
  CLUS_3                           15                             83
  CLUS_4                           32                             84
  CLUS_5                            4                             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(13Q22.1) MUTATED       33     41     17
  AMP PEAK 20(13Q22.1) WILD-TYPE    107    203     72
D20V10, multiclass
        clus
vv       AMP PEAK 20(13Q22.1) MUTATED AMP PEAK 20(13Q22.1) WILD-TYPE
  CLUS_1                           33                            107
  CLUS_2                           41                            203
  CLUS_3                           17                             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = AMP PEAK 21(13Q34) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(13Q34) MUTATED       59     22     18      7
  AMP PEAK 21(13Q34) WILD-TYPE     96    113    171     36
D21V1, multiclass
        clus
vv       AMP PEAK 21(13Q34) MUTATED AMP PEAK 21(13Q34) WILD-TYPE
  CLUS_1                         59                           96
  CLUS_2                         22                          113
  CLUS_3                         18                          171
  CLUS_4                          7                           36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 21(13Q34) MUTATED       11     18     34     20     10      6      7
  AMP PEAK 21(13Q34) WILD-TYPE     73     61     62     72     68     69     11
D21V2, multiclass
        clus
vv       AMP PEAK 21(13Q34) MUTATED AMP PEAK 21(13Q34) WILD-TYPE
  CLUS_1                         11                           73
  CLUS_2                         18                           61
  CLUS_3                         34                           62
  CLUS_4                         20                           72
  CLUS_5                         10                           68
  CLUS_6                          6                           69
  CLUS_7                          7                           11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(13Q34) MUTATED       15      9      4     14
  AMP PEAK 21(13Q34) WILD-TYPE     38     42     33     51
D21V3, multiclass
        clus
vv       AMP PEAK 21(13Q34) MUTATED AMP PEAK 21(13Q34) WILD-TYPE
  CLUS_1                         15                           38
  CLUS_2                          9                           42
  CLUS_3                          4                           33
  CLUS_4                         14                           51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(13Q34) MUTATED       18     17      7
  AMP PEAK 21(13Q34) WILD-TYPE     58     65     41
D21V4, multiclass
        clus
vv       AMP PEAK 21(13Q34) MUTATED AMP PEAK 21(13Q34) WILD-TYPE
  CLUS_1                         18                           58
  CLUS_2                         17                           65
  CLUS_3                          7                           41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(13Q34) MUTATED       32     31     42
  AMP PEAK 21(13Q34) WILD-TYPE    109    181    119
D21V5, multiclass
        clus
vv       AMP PEAK 21(13Q34) MUTATED AMP PEAK 21(13Q34) WILD-TYPE
  CLUS_1                         32                          109
  CLUS_2                         31                          181
  CLUS_3                         42                          119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(13Q34) MUTATED       46     22     33      4
  AMP PEAK 21(13Q34) WILD-TYPE    130     81    137     61
D21V6, multiclass
        clus
vv       AMP PEAK 21(13Q34) MUTATED AMP PEAK 21(13Q34) WILD-TYPE
  CLUS_1                         46                          130
  CLUS_2                         22                           81
  CLUS_3                         33                          137
  CLUS_4                          4                           61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(13Q34) MUTATED       38     28     38
  AMP PEAK 21(13Q34) WILD-TYPE    183    124    107
D21V7, multiclass
        clus
vv       AMP PEAK 21(13Q34) MUTATED AMP PEAK 21(13Q34) WILD-TYPE
  CLUS_1                         38                          183
  CLUS_2                         28                          124
  CLUS_3                         38                          107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(13Q34) MUTATED       45     30     29
  AMP PEAK 21(13Q34) WILD-TYPE    145    112    157
D21V8, multiclass
        clus
vv       AMP PEAK 21(13Q34) MUTATED AMP PEAK 21(13Q34) WILD-TYPE
  CLUS_1                         45                          145
  CLUS_2                         30                          112
  CLUS_3                         29                          157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(13Q34) MUTATED       10     37     14     30      5
  AMP PEAK 21(13Q34) WILD-TYPE     62    103     84     86     42
D21V9, multiclass
        clus
vv       AMP PEAK 21(13Q34) MUTATED AMP PEAK 21(13Q34) WILD-TYPE
  CLUS_1                         10                           62
  CLUS_2                         37                          103
  CLUS_3                         14                           84
  CLUS_4                         30                           86
  CLUS_5                          5                           42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(13Q34) MUTATED       35     41     20
  AMP PEAK 21(13Q34) WILD-TYPE    105    203     69
D21V10, multiclass
        clus
vv       AMP PEAK 21(13Q34) MUTATED AMP PEAK 21(13Q34) WILD-TYPE
  CLUS_1                         35                          105
  CLUS_2                         41                          203
  CLUS_3                         20                           69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = AMP PEAK 22(15Q26.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(15Q26.3) MUTATED       39     42     17      7
  AMP PEAK 22(15Q26.3) WILD-TYPE    116     93    172     36
D22V1, multiclass
        clus
vv       AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  CLUS_1                           39                            116
  CLUS_2                           42                             93
  CLUS_3                           17                            172
  CLUS_4                            7                             36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 22(15Q26.3) MUTATED        9     19     23     26      8     14
  AMP PEAK 22(15Q26.3) WILD-TYPE     75     60     73     66     70     61
                                vv
clus                             CLUS_7
  AMP PEAK 22(15Q26.3) MUTATED        6
  AMP PEAK 22(15Q26.3) WILD-TYPE     12
D22V2, multiclass
        clus
vv       AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  CLUS_1                            9                             75
  CLUS_2                           19                             60
  CLUS_3                           23                             73
  CLUS_4                           26                             66
  CLUS_5                            8                             70
  CLUS_6                           14                             61
  CLUS_7                            6                             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(15Q26.3) MUTATED       11     15      8     11
  AMP PEAK 22(15Q26.3) WILD-TYPE     42     36     29     54
D22V3, multiclass
        clus
vv       AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  CLUS_1                           11                             42
  CLUS_2                           15                             36
  CLUS_3                            8                             29
  CLUS_4                           11                             54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(15Q26.3) MUTATED       17     21      7
  AMP PEAK 22(15Q26.3) WILD-TYPE     59     61     41
D22V4, multiclass
        clus
vv       AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  CLUS_1                           17                             59
  CLUS_2                           21                             61
  CLUS_3                            7                             41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(15Q26.3) MUTATED       31     37     36
  AMP PEAK 22(15Q26.3) WILD-TYPE    110    175    125
D22V5, multiclass
        clus
vv       AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  CLUS_1                           31                            110
  CLUS_2                           37                            175
  CLUS_3                           36                            125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(15Q26.3) MUTATED       34     28     35      7
  AMP PEAK 22(15Q26.3) WILD-TYPE    142     75    135     58
D22V6, multiclass
        clus
vv       AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  CLUS_1                           34                            142
  CLUS_2                           28                             75
  CLUS_3                           35                            135
  CLUS_4                            7                             58
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(15Q26.3) MUTATED       51     23     29
  AMP PEAK 22(15Q26.3) WILD-TYPE    170    129    116
D22V7, multiclass
        clus
vv       AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  CLUS_1                           51                            170
  CLUS_2                           23                            129
  CLUS_3                           29                            116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(15Q26.3) MUTATED       35     38     30
  AMP PEAK 22(15Q26.3) WILD-TYPE    155    104    156
D22V8, multiclass
        clus
vv       AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  CLUS_1                           35                            155
  CLUS_2                           38                            104
  CLUS_3                           30                            156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 22(15Q26.3) MUTATED       11     24     26     28      4
  AMP PEAK 22(15Q26.3) WILD-TYPE     61    116     72     88     43
D22V9, multiclass
        clus
vv       AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  CLUS_1                           11                             61
  CLUS_2                           24                            116
  CLUS_3                           26                             72
  CLUS_4                           28                             88
  CLUS_5                            4                             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(15Q26.3) MUTATED       32     45     16
  AMP PEAK 22(15Q26.3) WILD-TYPE    108    199     73
D22V10, multiclass
        clus
vv       AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  CLUS_1                           32                            108
  CLUS_2                           45                            199
  CLUS_3                           16                             73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = AMP PEAK 23(17Q12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(17Q12) MUTATED       26     48      9      8
  AMP PEAK 23(17Q12) WILD-TYPE    129     87    180     35
D23V1, multiclass
        clus
vv       AMP PEAK 23(17Q12) MUTATED AMP PEAK 23(17Q12) WILD-TYPE
  CLUS_1                         26                          129
  CLUS_2                         48                           87
  CLUS_3                          9                          180
  CLUS_4                          8                           35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 23(17Q12) MUTATED        7     21     21     29      6      6      1
  AMP PEAK 23(17Q12) WILD-TYPE     77     58     75     63     72     69     17
D23V2, multiclass
        clus
vv       AMP PEAK 23(17Q12) MUTATED AMP PEAK 23(17Q12) WILD-TYPE
  CLUS_1                          7                           77
  CLUS_2                         21                           58
  CLUS_3                         21                           75
  CLUS_4                         29                           63
  CLUS_5                          6                           72
  CLUS_6                          6                           69
  CLUS_7                          1                           17
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(17Q12) MUTATED        6     13      7      8
  AMP PEAK 23(17Q12) WILD-TYPE     47     38     30     57
D23V3, multiclass
        clus
vv       AMP PEAK 23(17Q12) MUTATED AMP PEAK 23(17Q12) WILD-TYPE
  CLUS_1                          6                           47
  CLUS_2                         13                           38
  CLUS_3                          7                           30
  CLUS_4                          8                           57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(17Q12) MUTATED       14     14      6
  AMP PEAK 23(17Q12) WILD-TYPE     62     68     42
D23V4, multiclass
        clus
vv       AMP PEAK 23(17Q12) MUTATED AMP PEAK 23(17Q12) WILD-TYPE
  CLUS_1                         14                           62
  CLUS_2                         14                           68
  CLUS_3                          6                           42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(17Q12) MUTATED       22     50     18
  AMP PEAK 23(17Q12) WILD-TYPE    119    162    143
D23V5, multiclass
        clus
vv       AMP PEAK 23(17Q12) MUTATED AMP PEAK 23(17Q12) WILD-TYPE
  CLUS_1                         22                          119
  CLUS_2                         50                          162
  CLUS_3                         18                          143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(17Q12) MUTATED       24     36     23      7
  AMP PEAK 23(17Q12) WILD-TYPE    152     67    147     58
D23V6, multiclass
        clus
vv       AMP PEAK 23(17Q12) MUTATED AMP PEAK 23(17Q12) WILD-TYPE
  CLUS_1                         24                          152
  CLUS_2                         36                           67
  CLUS_3                         23                          147
  CLUS_4                          7                           58
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(17Q12) MUTATED       53     18     19
  AMP PEAK 23(17Q12) WILD-TYPE    168    134    126
D23V7, multiclass
        clus
vv       AMP PEAK 23(17Q12) MUTATED AMP PEAK 23(17Q12) WILD-TYPE
  CLUS_1                         53                          168
  CLUS_2                         18                          134
  CLUS_3                         19                          126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(17Q12) MUTATED       31     41     18
  AMP PEAK 23(17Q12) WILD-TYPE    159    101    168
D23V8, multiclass
        clus
vv       AMP PEAK 23(17Q12) MUTATED AMP PEAK 23(17Q12) WILD-TYPE
  CLUS_1                         31                          159
  CLUS_2                         41                          101
  CLUS_3                         18                          168
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 23(17Q12) MUTATED       12     22     29     18      3
  AMP PEAK 23(17Q12) WILD-TYPE     60    118     69     98     44
D23V9, multiclass
        clus
vv       AMP PEAK 23(17Q12) MUTATED AMP PEAK 23(17Q12) WILD-TYPE
  CLUS_1                         12                           60
  CLUS_2                         22                          118
  CLUS_3                         29                           69
  CLUS_4                         18                           98
  CLUS_5                          3                           44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(17Q12) MUTATED       26     40     18
  AMP PEAK 23(17Q12) WILD-TYPE    114    204     71
D23V10, multiclass
        clus
vv       AMP PEAK 23(17Q12) MUTATED AMP PEAK 23(17Q12) WILD-TYPE
  CLUS_1                         26                          114
  CLUS_2                         40                          204
  CLUS_3                         18                           71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = AMP PEAK 24(18P11.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(18P11.31) MUTATED       61     63     23      9
  AMP PEAK 24(18P11.31) WILD-TYPE     94     72    166     34
D24V1, multiclass
        clus
vv       AMP PEAK 24(18P11.31) MUTATED AMP PEAK 24(18P11.31) WILD-TYPE
  CLUS_1                            61                              94
  CLUS_2                            63                              72
  CLUS_3                            23                             166
  CLUS_4                             9                              34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 24(18P11.31) MUTATED        9     45     33     34     21     10
  AMP PEAK 24(18P11.31) WILD-TYPE     75     34     63     58     57     65
                                 vv
clus                              CLUS_7
  AMP PEAK 24(18P11.31) MUTATED        4
  AMP PEAK 24(18P11.31) WILD-TYPE     14
D24V2, multiclass
        clus
vv       AMP PEAK 24(18P11.31) MUTATED AMP PEAK 24(18P11.31) WILD-TYPE
  CLUS_1                             9                              75
  CLUS_2                            45                              34
  CLUS_3                            33                              63
  CLUS_4                            34                              58
  CLUS_5                            21                              57
  CLUS_6                            10                              65
  CLUS_7                             4                              14
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(18P11.31) MUTATED       16     19     12     16
  AMP PEAK 24(18P11.31) WILD-TYPE     37     32     25     49
D24V3, multiclass
        clus
vv       AMP PEAK 24(18P11.31) MUTATED AMP PEAK 24(18P11.31) WILD-TYPE
  CLUS_1                            16                              37
  CLUS_2                            19                              32
  CLUS_3                            12                              25
  CLUS_4                            16                              49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(18P11.31) MUTATED       21     29     13
  AMP PEAK 24(18P11.31) WILD-TYPE     55     53     35
D24V4, multiclass
        clus
vv       AMP PEAK 24(18P11.31) MUTATED AMP PEAK 24(18P11.31) WILD-TYPE
  CLUS_1                            21                              55
  CLUS_2                            29                              53
  CLUS_3                            13                              35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(18P11.31) MUTATED       40     74     40
  AMP PEAK 24(18P11.31) WILD-TYPE    101    138    121
D24V5, multiclass
        clus
vv       AMP PEAK 24(18P11.31) MUTATED AMP PEAK 24(18P11.31) WILD-TYPE
  CLUS_1                            40                             101
  CLUS_2                            74                             138
  CLUS_3                            40                             121
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(18P11.31) MUTATED       46     52     39     17
  AMP PEAK 24(18P11.31) WILD-TYPE    130     51    131     48
D24V6, multiclass
        clus
vv       AMP PEAK 24(18P11.31) MUTATED AMP PEAK 24(18P11.31) WILD-TYPE
  CLUS_1                            46                             130
  CLUS_2                            52                              51
  CLUS_3                            39                             131
  CLUS_4                            17                              48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(18P11.31) MUTATED       74     41     40
  AMP PEAK 24(18P11.31) WILD-TYPE    147    111    105
D24V7, multiclass
        clus
vv       AMP PEAK 24(18P11.31) MUTATED AMP PEAK 24(18P11.31) WILD-TYPE
  CLUS_1                            74                             147
  CLUS_2                            41                             111
  CLUS_3                            40                             105
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(18P11.31) MUTATED       49     62     44
  AMP PEAK 24(18P11.31) WILD-TYPE    141     80    142
D24V8, multiclass
        clus
vv       AMP PEAK 24(18P11.31) MUTATED AMP PEAK 24(18P11.31) WILD-TYPE
  CLUS_1                            49                             141
  CLUS_2                            62                              80
  CLUS_3                            44                             142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 24(18P11.31) MUTATED       25     28     47     30      7
  AMP PEAK 24(18P11.31) WILD-TYPE     47    112     51     86     40
D24V9, multiclass
        clus
vv       AMP PEAK 24(18P11.31) MUTATED AMP PEAK 24(18P11.31) WILD-TYPE
  CLUS_1                            25                              47
  CLUS_2                            28                             112
  CLUS_3                            47                              51
  CLUS_4                            30                              86
  CLUS_5                             7                              40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(18P11.31) MUTATED       42     79     16
  AMP PEAK 24(18P11.31) WILD-TYPE     98    165     73
D24V10, multiclass
        clus
vv       AMP PEAK 24(18P11.31) MUTATED AMP PEAK 24(18P11.31) WILD-TYPE
  CLUS_1                            42                              98
  CLUS_2                            79                             165
  CLUS_3                            16                              73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = AMP PEAK 25(18Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(18Q11.2) MUTATED       42     40     19      5
  AMP PEAK 25(18Q11.2) WILD-TYPE    113     95    170     38
D25V1, multiclass
        clus
vv       AMP PEAK 25(18Q11.2) MUTATED AMP PEAK 25(18Q11.2) WILD-TYPE
  CLUS_1                           42                            113
  CLUS_2                           40                             95
  CLUS_3                           19                            170
  CLUS_4                            5                             38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 25(18Q11.2) MUTATED        6     24     24     26     17      6
  AMP PEAK 25(18Q11.2) WILD-TYPE     78     55     72     66     61     69
                                vv
clus                             CLUS_7
  AMP PEAK 25(18Q11.2) MUTATED        3
  AMP PEAK 25(18Q11.2) WILD-TYPE     15
D25V2, multiclass
        clus
vv       AMP PEAK 25(18Q11.2) MUTATED AMP PEAK 25(18Q11.2) WILD-TYPE
  CLUS_1                            6                             78
  CLUS_2                           24                             55
  CLUS_3                           24                             72
  CLUS_4                           26                             66
  CLUS_5                           17                             61
  CLUS_6                            6                             69
  CLUS_7                            3                             15
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(18Q11.2) MUTATED       13     13      5     13
  AMP PEAK 25(18Q11.2) WILD-TYPE     40     38     32     52
D25V3, multiclass
        clus
vv       AMP PEAK 25(18Q11.2) MUTATED AMP PEAK 25(18Q11.2) WILD-TYPE
  CLUS_1                           13                             40
  CLUS_2                           13                             38
  CLUS_3                            5                             32
  CLUS_4                           13                             52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(18Q11.2) MUTATED       17     21      6
  AMP PEAK 25(18Q11.2) WILD-TYPE     59     61     42
D25V4, multiclass
        clus
vv       AMP PEAK 25(18Q11.2) MUTATED AMP PEAK 25(18Q11.2) WILD-TYPE
  CLUS_1                           17                             59
  CLUS_2                           21                             61
  CLUS_3                            6                             42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(18Q11.2) MUTATED       25     49     31
  AMP PEAK 25(18Q11.2) WILD-TYPE    116    163    130
D25V5, multiclass
        clus
vv       AMP PEAK 25(18Q11.2) MUTATED AMP PEAK 25(18Q11.2) WILD-TYPE
  CLUS_1                           25                            116
  CLUS_2                           49                            163
  CLUS_3                           31                            130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(18Q11.2) MUTATED       29     33     29     14
  AMP PEAK 25(18Q11.2) WILD-TYPE    147     70    141     51
D25V6, multiclass
        clus
vv       AMP PEAK 25(18Q11.2) MUTATED AMP PEAK 25(18Q11.2) WILD-TYPE
  CLUS_1                           29                            147
  CLUS_2                           33                             70
  CLUS_3                           29                            141
  CLUS_4                           14                             51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(18Q11.2) MUTATED       58     22     25
  AMP PEAK 25(18Q11.2) WILD-TYPE    163    130    120
D25V7, multiclass
        clus
vv       AMP PEAK 25(18Q11.2) MUTATED AMP PEAK 25(18Q11.2) WILD-TYPE
  CLUS_1                           58                            163
  CLUS_2                           22                            130
  CLUS_3                           25                            120
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(18Q11.2) MUTATED       33     40     32
  AMP PEAK 25(18Q11.2) WILD-TYPE    157    102    154
D25V8, multiclass
        clus
vv       AMP PEAK 25(18Q11.2) MUTATED AMP PEAK 25(18Q11.2) WILD-TYPE
  CLUS_1                           33                            157
  CLUS_2                           40                            102
  CLUS_3                           32                            154
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 25(18Q11.2) MUTATED       13     20     31     22      6
  AMP PEAK 25(18Q11.2) WILD-TYPE     59    120     67     94     41
D25V9, multiclass
        clus
vv       AMP PEAK 25(18Q11.2) MUTATED AMP PEAK 25(18Q11.2) WILD-TYPE
  CLUS_1                           13                             59
  CLUS_2                           20                            120
  CLUS_3                           31                             67
  CLUS_4                           22                             94
  CLUS_5                            6                             41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(18Q11.2) MUTATED       26     54     12
  AMP PEAK 25(18Q11.2) WILD-TYPE    114    190     77
D25V10, multiclass
        clus
vv       AMP PEAK 25(18Q11.2) MUTATED AMP PEAK 25(18Q11.2) WILD-TYPE
  CLUS_1                           26                            114
  CLUS_2                           54                            190
  CLUS_3                           12                             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = AMP PEAK 26(19P13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 26(19P13.2) MUTATED       18     20     15      7
  AMP PEAK 26(19P13.2) WILD-TYPE    137    115    174     36
D26V1, multiclass
        clus
vv       AMP PEAK 26(19P13.2) MUTATED AMP PEAK 26(19P13.2) WILD-TYPE
  CLUS_1                           18                            137
  CLUS_2                           20                            115
  CLUS_3                           15                            174
  CLUS_4                            7                             36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 26(19P13.2) MUTATED        4      9      4     20     20      2
  AMP PEAK 26(19P13.2) WILD-TYPE     80     70     92     72     58     73
                                vv
clus                             CLUS_7
  AMP PEAK 26(19P13.2) MUTATED        1
  AMP PEAK 26(19P13.2) WILD-TYPE     17
D26V2, multiclass
        clus
vv       AMP PEAK 26(19P13.2) MUTATED AMP PEAK 26(19P13.2) WILD-TYPE
  CLUS_1                            4                             80
  CLUS_2                            9                             70
  CLUS_3                            4                             92
  CLUS_4                           20                             72
  CLUS_5                           20                             58
  CLUS_6                            2                             73
  CLUS_7                            1                             17
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 26(19P13.2) MUTATED        4      9      5      2
  AMP PEAK 26(19P13.2) WILD-TYPE     49     42     32     63
D26V3, multiclass
        clus
vv       AMP PEAK 26(19P13.2) MUTATED AMP PEAK 26(19P13.2) WILD-TYPE
  CLUS_1                            4                             49
  CLUS_2                            9                             42
  CLUS_3                            5                             32
  CLUS_4                            2                             63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(19P13.2) MUTATED        7      8      5
  AMP PEAK 26(19P13.2) WILD-TYPE     69     74     43
D26V4, multiclass
        clus
vv       AMP PEAK 26(19P13.2) MUTATED AMP PEAK 26(19P13.2) WILD-TYPE
  CLUS_1                            7                             69
  CLUS_2                            8                             74
  CLUS_3                            5                             43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(19P13.2) MUTATED       12     37      9
  AMP PEAK 26(19P13.2) WILD-TYPE    129    175    152
D26V5, multiclass
        clus
vv       AMP PEAK 26(19P13.2) MUTATED AMP PEAK 26(19P13.2) WILD-TYPE
  CLUS_1                           12                            129
  CLUS_2                           37                            175
  CLUS_3                            9                            152
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 26(19P13.2) MUTATED       13     17     15     13
  AMP PEAK 26(19P13.2) WILD-TYPE    163     86    155     52
D26V6, multiclass
        clus
vv       AMP PEAK 26(19P13.2) MUTATED AMP PEAK 26(19P13.2) WILD-TYPE
  CLUS_1                           13                            163
  CLUS_2                           17                             86
  CLUS_3                           15                            155
  CLUS_4                           13                             52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(19P13.2) MUTATED       35     14     10
  AMP PEAK 26(19P13.2) WILD-TYPE    186    138    135
D26V7, multiclass
        clus
vv       AMP PEAK 26(19P13.2) MUTATED AMP PEAK 26(19P13.2) WILD-TYPE
  CLUS_1                           35                            186
  CLUS_2                           14                            138
  CLUS_3                           10                            135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(19P13.2) MUTATED       17     15     27
  AMP PEAK 26(19P13.2) WILD-TYPE    173    127    159
D26V8, multiclass
        clus
vv       AMP PEAK 26(19P13.2) MUTATED AMP PEAK 26(19P13.2) WILD-TYPE
  CLUS_1                           17                            173
  CLUS_2                           15                            127
  CLUS_3                           27                            159
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 26(19P13.2) MUTATED       10     12     12     10      9
  AMP PEAK 26(19P13.2) WILD-TYPE     62    128     86    106     38
D26V9, multiclass
        clus
vv       AMP PEAK 26(19P13.2) MUTATED AMP PEAK 26(19P13.2) WILD-TYPE
  CLUS_1                           10                             62
  CLUS_2                           12                            128
  CLUS_3                           12                             86
  CLUS_4                           10                            106
  CLUS_5                            9                             38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(19P13.2) MUTATED       12     34      7
  AMP PEAK 26(19P13.2) WILD-TYPE    128    210     82
D26V10, multiclass
        clus
vv       AMP PEAK 26(19P13.2) MUTATED AMP PEAK 26(19P13.2) WILD-TYPE
  CLUS_1                           12                            128
  CLUS_2                           34                            210
  CLUS_3                            7                             82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = AMP PEAK 27(20P12.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 27(20P12.2) MUTATED       80     46     48     17
  AMP PEAK 27(20P12.2) WILD-TYPE     75     89    141     26
D27V1, multiclass
        clus
vv       AMP PEAK 27(20P12.2) MUTATED AMP PEAK 27(20P12.2) WILD-TYPE
  CLUS_1                           80                             75
  CLUS_2                           46                             89
  CLUS_3                           48                            141
  CLUS_4                           17                             26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 27(20P12.2) MUTATED       28     25     54     39     21     16
  AMP PEAK 27(20P12.2) WILD-TYPE     56     54     42     53     57     59
                                vv
clus                             CLUS_7
  AMP PEAK 27(20P12.2) MUTATED        8
  AMP PEAK 27(20P12.2) WILD-TYPE     10
D27V2, multiclass
        clus
vv       AMP PEAK 27(20P12.2) MUTATED AMP PEAK 27(20P12.2) WILD-TYPE
  CLUS_1                           28                             56
  CLUS_2                           25                             54
  CLUS_3                           54                             42
  CLUS_4                           39                             53
  CLUS_5                           21                             57
  CLUS_6                           16                             59
  CLUS_7                            8                             10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 27(20P12.2) MUTATED       20     20     17     27
  AMP PEAK 27(20P12.2) WILD-TYPE     33     31     20     38
D27V3, multiclass
        clus
vv       AMP PEAK 27(20P12.2) MUTATED AMP PEAK 27(20P12.2) WILD-TYPE
  CLUS_1                           20                             33
  CLUS_2                           20                             31
  CLUS_3                           17                             20
  CLUS_4                           27                             38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(20P12.2) MUTATED       32     32     20
  AMP PEAK 27(20P12.2) WILD-TYPE     44     50     28
D27V4, multiclass
        clus
vv       AMP PEAK 27(20P12.2) MUTATED AMP PEAK 27(20P12.2) WILD-TYPE
  CLUS_1                           32                             44
  CLUS_2                           32                             50
  CLUS_3                           20                             28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(20P12.2) MUTATED       62     68     57
  AMP PEAK 27(20P12.2) WILD-TYPE     79    144    104
D27V5, multiclass
        clus
vv       AMP PEAK 27(20P12.2) MUTATED AMP PEAK 27(20P12.2) WILD-TYPE
  CLUS_1                           62                             79
  CLUS_2                           68                            144
  CLUS_3                           57                            104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 27(20P12.2) MUTATED       80     34     59     14
  AMP PEAK 27(20P12.2) WILD-TYPE     96     69    111     51
D27V6, multiclass
        clus
vv       AMP PEAK 27(20P12.2) MUTATED AMP PEAK 27(20P12.2) WILD-TYPE
  CLUS_1                           80                             96
  CLUS_2                           34                             69
  CLUS_3                           59                            111
  CLUS_4                           14                             51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(20P12.2) MUTATED       75     52     64
  AMP PEAK 27(20P12.2) WILD-TYPE    146    100     81
D27V7, multiclass
        clus
vv       AMP PEAK 27(20P12.2) MUTATED AMP PEAK 27(20P12.2) WILD-TYPE
  CLUS_1                           75                            146
  CLUS_2                           52                            100
  CLUS_3                           64                             81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(20P12.2) MUTATED       84     50     57
  AMP PEAK 27(20P12.2) WILD-TYPE    106     92    129
D27V8, multiclass
        clus
vv       AMP PEAK 27(20P12.2) MUTATED AMP PEAK 27(20P12.2) WILD-TYPE
  CLUS_1                           84                            106
  CLUS_2                           50                             92
  CLUS_3                           57                            129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 27(20P12.2) MUTATED       24     56     31     45     16
  AMP PEAK 27(20P12.2) WILD-TYPE     48     84     67     71     31
D27V9, multiclass
        clus
vv       AMP PEAK 27(20P12.2) MUTATED AMP PEAK 27(20P12.2) WILD-TYPE
  CLUS_1                           24                             48
  CLUS_2                           56                             84
  CLUS_3                           31                             67
  CLUS_4                           45                             71
  CLUS_5                           16                             31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(20P12.2) MUTATED       61     76     35
  AMP PEAK 27(20P12.2) WILD-TYPE     79    168     54
D27V10, multiclass
        clus
vv       AMP PEAK 27(20P12.2) MUTATED AMP PEAK 27(20P12.2) WILD-TYPE
  CLUS_1                           61                             79
  CLUS_2                           76                            168
  CLUS_3                           35                             54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(28) Variable = AMP PEAK 28(20Q11.22) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 28(20Q11.22) MUTATED       94     60     53     20
  AMP PEAK 28(20Q11.22) WILD-TYPE     61     75    136     23
D28V1, multiclass
        clus
vv       AMP PEAK 28(20Q11.22) MUTATED AMP PEAK 28(20Q11.22) WILD-TYPE
  CLUS_1                            94                              61
  CLUS_2                            60                              75
  CLUS_3                            53                             136
  CLUS_4                            20                              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 28(20Q11.22) MUTATED       31     38     59     45     27     18
  AMP PEAK 28(20Q11.22) WILD-TYPE     53     41     37     47     51     57
                                 vv
clus                              CLUS_7
  AMP PEAK 28(20Q11.22) MUTATED        9
  AMP PEAK 28(20Q11.22) WILD-TYPE      9
D28V2, multiclass
        clus
vv       AMP PEAK 28(20Q11.22) MUTATED AMP PEAK 28(20Q11.22) WILD-TYPE
  CLUS_1                            31                              53
  CLUS_2                            38                              41
  CLUS_3                            59                              37
  CLUS_4                            45                              47
  CLUS_5                            27                              51
  CLUS_6                            18                              57
  CLUS_7                             9                               9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 28(20Q11.22) MUTATED       25     25     18     24
  AMP PEAK 28(20Q11.22) WILD-TYPE     28     26     19     41
D28V3, multiclass
        clus
vv       AMP PEAK 28(20Q11.22) MUTATED AMP PEAK 28(20Q11.22) WILD-TYPE
  CLUS_1                            25                              28
  CLUS_2                            25                              26
  CLUS_3                            18                              19
  CLUS_4                            24                              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(20Q11.22) MUTATED       36     35     21
  AMP PEAK 28(20Q11.22) WILD-TYPE     40     47     27
D28V4, multiclass
        clus
vv       AMP PEAK 28(20Q11.22) MUTATED AMP PEAK 28(20Q11.22) WILD-TYPE
  CLUS_1                            36                              40
  CLUS_2                            35                              47
  CLUS_3                            21                              27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(20Q11.22) MUTATED       73     87     63
  AMP PEAK 28(20Q11.22) WILD-TYPE     68    125     98
D28V5, multiclass
        clus
vv       AMP PEAK 28(20Q11.22) MUTATED AMP PEAK 28(20Q11.22) WILD-TYPE
  CLUS_1                            73                              68
  CLUS_2                            87                             125
  CLUS_3                            63                              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 28(20Q11.22) MUTATED       90     44     69     20
  AMP PEAK 28(20Q11.22) WILD-TYPE     86     59    101     45
D28V6, multiclass
        clus
vv       AMP PEAK 28(20Q11.22) MUTATED AMP PEAK 28(20Q11.22) WILD-TYPE
  CLUS_1                            90                              86
  CLUS_2                            44                              59
  CLUS_3                            69                             101
  CLUS_4                            20                              45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(20Q11.22) MUTATED       91     63     71
  AMP PEAK 28(20Q11.22) WILD-TYPE    130     89     74
D28V7, multiclass
        clus
vv       AMP PEAK 28(20Q11.22) MUTATED AMP PEAK 28(20Q11.22) WILD-TYPE
  CLUS_1                            91                             130
  CLUS_2                            63                              89
  CLUS_3                            71                              74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(20Q11.22) MUTATED       96     61     68
  AMP PEAK 28(20Q11.22) WILD-TYPE     94     81    118
D28V8, multiclass
        clus
vv       AMP PEAK 28(20Q11.22) MUTATED AMP PEAK 28(20Q11.22) WILD-TYPE
  CLUS_1                            96                              94
  CLUS_2                            61                              81
  CLUS_3                            68                             118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 28(20Q11.22) MUTATED       29     63     44     50     17
  AMP PEAK 28(20Q11.22) WILD-TYPE     43     77     54     66     30
D28V9, multiclass
        clus
vv       AMP PEAK 28(20Q11.22) MUTATED AMP PEAK 28(20Q11.22) WILD-TYPE
  CLUS_1                            29                              43
  CLUS_2                            63                              77
  CLUS_3                            44                              54
  CLUS_4                            50                              66
  CLUS_5                            17                              30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(20Q11.22) MUTATED       70     93     40
  AMP PEAK 28(20Q11.22) WILD-TYPE     70    151     49
D28V10, multiclass
        clus
vv       AMP PEAK 28(20Q11.22) MUTATED AMP PEAK 28(20Q11.22) WILD-TYPE
  CLUS_1                            70                              70
  CLUS_2                            93                             151
  CLUS_3                            40                              49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(29) Variable = AMP PEAK 29(XQ28) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 29(XQ28) MUTATED       66     46     26     12
  AMP PEAK 29(XQ28) WILD-TYPE     89     89    163     31
D29V1, multiclass
        clus
vv       AMP PEAK 29(XQ28) MUTATED AMP PEAK 29(XQ28) WILD-TYPE
  CLUS_1                        66                          89
  CLUS_2                        46                          89
  CLUS_3                        26                         163
  CLUS_4                        12                          31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 29(XQ28) MUTATED       11     20     42     37     20     13      7
  AMP PEAK 29(XQ28) WILD-TYPE     73     59     54     55     58     62     11
D29V2, multiclass
        clus
vv       AMP PEAK 29(XQ28) MUTATED AMP PEAK 29(XQ28) WILD-TYPE
  CLUS_1                        11                          73
  CLUS_2                        20                          59
  CLUS_3                        42                          54
  CLUS_4                        37                          55
  CLUS_5                        20                          58
  CLUS_6                        13                          62
  CLUS_7                         7                          11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 29(XQ28) MUTATED       13     15     12     23
  AMP PEAK 29(XQ28) WILD-TYPE     40     36     25     42
D29V3, multiclass
        clus
vv       AMP PEAK 29(XQ28) MUTATED AMP PEAK 29(XQ28) WILD-TYPE
  CLUS_1                        13                          40
  CLUS_2                        15                          36
  CLUS_3                        12                          25
  CLUS_4                        23                          42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(XQ28) MUTATED       20     31     12
  AMP PEAK 29(XQ28) WILD-TYPE     56     51     36
D29V4, multiclass
        clus
vv       AMP PEAK 29(XQ28) MUTATED AMP PEAK 29(XQ28) WILD-TYPE
  CLUS_1                        20                          56
  CLUS_2                        31                          51
  CLUS_3                        12                          36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(XQ28) MUTATED       48     56     43
  AMP PEAK 29(XQ28) WILD-TYPE     93    156    118
D29V5, multiclass
        clus
vv       AMP PEAK 29(XQ28) MUTATED AMP PEAK 29(XQ28) WILD-TYPE
  CLUS_1                        48                          93
  CLUS_2                        56                         156
  CLUS_3                        43                         118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 29(XQ28) MUTATED       58     31     43     15
  AMP PEAK 29(XQ28) WILD-TYPE    118     72    127     50
D29V6, multiclass
        clus
vv       AMP PEAK 29(XQ28) MUTATED AMP PEAK 29(XQ28) WILD-TYPE
  CLUS_1                        58                         118
  CLUS_2                        31                          72
  CLUS_3                        43                         127
  CLUS_4                        15                          50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(XQ28) MUTATED       63     36     47
  AMP PEAK 29(XQ28) WILD-TYPE    158    116     98
D29V7, multiclass
        clus
vv       AMP PEAK 29(XQ28) MUTATED AMP PEAK 29(XQ28) WILD-TYPE
  CLUS_1                        63                         158
  CLUS_2                        36                         116
  CLUS_3                        47                          98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(XQ28) MUTATED       61     43     42
  AMP PEAK 29(XQ28) WILD-TYPE    129     99    144
D29V8, multiclass
        clus
vv       AMP PEAK 29(XQ28) MUTATED AMP PEAK 29(XQ28) WILD-TYPE
  CLUS_1                        61                         129
  CLUS_2                        43                          99
  CLUS_3                        42                         144
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 29(XQ28) MUTATED       21     44     28     35      7
  AMP PEAK 29(XQ28) WILD-TYPE     51     96     70     81     40
D29V9, multiclass
        clus
vv       AMP PEAK 29(XQ28) MUTATED AMP PEAK 29(XQ28) WILD-TYPE
  CLUS_1                        21                          51
  CLUS_2                        44                          96
  CLUS_3                        28                          70
  CLUS_4                        35                          81
  CLUS_5                         7                          40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(XQ28) MUTATED       50     65     20
  AMP PEAK 29(XQ28) WILD-TYPE     90    179     69
D29V10, multiclass
        clus
vv       AMP PEAK 29(XQ28) MUTATED AMP PEAK 29(XQ28) WILD-TYPE
  CLUS_1                        50                          90
  CLUS_2                        65                         179
  CLUS_3                        20                          69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(30) Variable = DEL PEAK  1(1P36.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.21) MUTATED       26     50     15      4
  DEL PEAK  1(1P36.21) WILD-TYPE    129     85    174     39
D30V1, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                           26                            129
  CLUS_2                           50                             85
  CLUS_3                           15                            174
  CLUS_4                            4                             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.21) MUTATED        4     17      8     48      8      8
  DEL PEAK  1(1P36.21) WILD-TYPE     80     62     88     44     70     67
                                vv
clus                             CLUS_7
  DEL PEAK  1(1P36.21) MUTATED        2
  DEL PEAK  1(1P36.21) WILD-TYPE     16
D30V2, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                            4                             80
  CLUS_2                           17                             62
  CLUS_3                            8                             88
  CLUS_4                           48                             44
  CLUS_5                            8                             70
  CLUS_6                            8                             67
  CLUS_7                            2                             16
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.21) MUTATED        9     22      4     10
  DEL PEAK  1(1P36.21) WILD-TYPE     44     29     33     55
D30V3, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                            9                             44
  CLUS_2                           22                             29
  CLUS_3                            4                             33
  CLUS_4                           10                             55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.21) MUTATED       15     26      4
  DEL PEAK  1(1P36.21) WILD-TYPE     61     56     44
D30V4, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                           15                             61
  CLUS_2                           26                             56
  CLUS_3                            4                             44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.21) MUTATED       22     60     12
  DEL PEAK  1(1P36.21) WILD-TYPE    119    152    149
D30V5, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                           22                            119
  CLUS_2                           60                            152
  CLUS_3                           12                            149
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.21) MUTATED       27     43     17      7
  DEL PEAK  1(1P36.21) WILD-TYPE    149     60    153     58
D30V6, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                           27                            149
  CLUS_2                           43                             60
  CLUS_3                           17                            153
  CLUS_4                            7                             58
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.21) MUTATED       55     19     18
  DEL PEAK  1(1P36.21) WILD-TYPE    166    133    127
D30V7, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                           55                            166
  CLUS_2                           19                            133
  CLUS_3                           18                            127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.21) MUTATED       27     35     30
  DEL PEAK  1(1P36.21) WILD-TYPE    163    107    156
D30V8, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                           27                            163
  CLUS_2                           35                            107
  CLUS_3                           30                            156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.21) MUTATED       14     13     29     21      5
  DEL PEAK  1(1P36.21) WILD-TYPE     58    127     69     95     42
D30V9, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                           14                             58
  CLUS_2                           13                            127
  CLUS_3                           29                             69
  CLUS_4                           21                             95
  CLUS_5                            5                             42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.21) MUTATED       23     52      7
  DEL PEAK  1(1P36.21) WILD-TYPE    117    192     82
D30V10, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                           23                            117
  CLUS_2                           52                            192
  CLUS_3                            7                             82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(31) Variable = DEL PEAK  2(1P13.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P13.2) MUTATED       51     61     11     10
  DEL PEAK  2(1P13.2) WILD-TYPE    104     74    178     33
D31V1, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                          51                           104
  CLUS_2                          61                            74
  CLUS_3                          11                           178
  CLUS_4                          10                            33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1P13.2) MUTATED       13     25     20     55      6      8
  DEL PEAK  2(1P13.2) WILD-TYPE     71     54     76     37     72     67
                               vv
clus                            CLUS_7
  DEL PEAK  2(1P13.2) MUTATED        6
  DEL PEAK  2(1P13.2) WILD-TYPE     12
D31V2, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                          13                            71
  CLUS_2                          25                            54
  CLUS_3                          20                            76
  CLUS_4                          55                            37
  CLUS_5                           6                            72
  CLUS_6                           8                            67
  CLUS_7                           6                            12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P13.2) MUTATED        8     21     10     21
  DEL PEAK  2(1P13.2) WILD-TYPE     45     30     27     44
D31V3, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                           8                            45
  CLUS_2                          21                            30
  CLUS_3                          10                            27
  CLUS_4                          21                            44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P13.2) MUTATED       17     34      9
  DEL PEAK  2(1P13.2) WILD-TYPE     59     48     39
D31V4, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                          17                            59
  CLUS_2                          34                            48
  CLUS_3                           9                            39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P13.2) MUTATED       35     66     30
  DEL PEAK  2(1P13.2) WILD-TYPE    106    146    131
D31V5, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                          35                           106
  CLUS_2                          66                           146
  CLUS_3                          30                           131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P13.2) MUTATED       43     45     37      6
  DEL PEAK  2(1P13.2) WILD-TYPE    133     58    133     59
D31V6, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                          43                           133
  CLUS_2                          45                            58
  CLUS_3                          37                           133
  CLUS_4                           6                            59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P13.2) MUTATED       73     27     31
  DEL PEAK  2(1P13.2) WILD-TYPE    148    125    114
D31V7, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                          73                           148
  CLUS_2                          27                           125
  CLUS_3                          31                           114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P13.2) MUTATED       47     53     31
  DEL PEAK  2(1P13.2) WILD-TYPE    143     89    155
D31V8, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                          47                           143
  CLUS_2                          53                            89
  CLUS_3                          31                           155
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P13.2) MUTATED       29     28     34     24      6
  DEL PEAK  2(1P13.2) WILD-TYPE     43    112     64     92     41
D31V9, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                          29                            43
  CLUS_2                          28                           112
  CLUS_3                          34                            64
  CLUS_4                          24                            92
  CLUS_5                           6                            41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P13.2) MUTATED       39     66     16
  DEL PEAK  2(1P13.2) WILD-TYPE    101    178     73
D31V10, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                          39                           101
  CLUS_2                          66                           178
  CLUS_3                          16                            73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(32) Variable = DEL PEAK  3(1Q44) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1Q44) MUTATED       25     10      7      6
  DEL PEAK  3(1Q44) WILD-TYPE    130    125    182     37
D32V1, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        25                         130
  CLUS_2                        10                         125
  CLUS_3                         7                         182
  CLUS_4                         6                          37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK  3(1Q44) MUTATED        7      6     16      8      1      7      3
  DEL PEAK  3(1Q44) WILD-TYPE     77     73     80     84     77     68     15
D32V2, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                         7                          77
  CLUS_2                         6                          73
  CLUS_3                        16                          80
  CLUS_4                         8                          84
  CLUS_5                         1                          77
  CLUS_6                         7                          68
  CLUS_7                         3                          15
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1Q44) MUTATED        5      4      2      8
  DEL PEAK  3(1Q44) WILD-TYPE     48     47     35     57
D32V3, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                         5                          48
  CLUS_2                         4                          47
  CLUS_3                         2                          35
  CLUS_4                         8                          57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q44) MUTATED        8      7      4
  DEL PEAK  3(1Q44) WILD-TYPE     68     75     44
D32V4, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                         8                          68
  CLUS_2                         7                          75
  CLUS_3                         4                          44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q44) MUTATED       17     10     19
  DEL PEAK  3(1Q44) WILD-TYPE    124    202    142
D32V5, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        17                         124
  CLUS_2                        10                         202
  CLUS_3                        19                         142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1Q44) MUTATED       25      8     12      1
  DEL PEAK  3(1Q44) WILD-TYPE    151     95    158     64
D32V6, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        25                         151
  CLUS_2                         8                          95
  CLUS_3                        12                         158
  CLUS_4                         1                          64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q44) MUTATED        9     20     18
  DEL PEAK  3(1Q44) WILD-TYPE    212    132    127
D32V7, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                         9                         212
  CLUS_2                        20                         132
  CLUS_3                        18                         127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q44) MUTATED       25     11     11
  DEL PEAK  3(1Q44) WILD-TYPE    165    131    175
D32V8, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        25                         165
  CLUS_2                        11                         131
  CLUS_3                        11                         175
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(1Q44) MUTATED        6     20      2     10      4
  DEL PEAK  3(1Q44) WILD-TYPE     66    120     96    106     43
D32V9, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                         6                          66
  CLUS_2                        20                         120
  CLUS_3                         2                          96
  CLUS_4                        10                         106
  CLUS_5                         4                          43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q44) MUTATED       11     20     11
  DEL PEAK  3(1Q44) WILD-TYPE    129    224     78
D32V10, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        11                         129
  CLUS_2                        20                         224
  CLUS_3                        11                          78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(33) Variable = DEL PEAK  4(2Q21.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q21.2) MUTATED       25     20     26      7
  DEL PEAK  4(2Q21.2) WILD-TYPE    130    115    163     36
D33V1, multiclass
        clus
vv       DEL PEAK  4(2Q21.2) MUTATED DEL PEAK  4(2Q21.2) WILD-TYPE
  CLUS_1                          25                           130
  CLUS_2                          20                           115
  CLUS_3                          26                           163
  CLUS_4                           7                            36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(2Q21.2) MUTATED        6      7     19     17      9     18
  DEL PEAK  4(2Q21.2) WILD-TYPE     78     72     77     75     69     57
                               vv
clus                            CLUS_7
  DEL PEAK  4(2Q21.2) MUTATED        2
  DEL PEAK  4(2Q21.2) WILD-TYPE     16
D33V2, multiclass
        clus
vv       DEL PEAK  4(2Q21.2) MUTATED DEL PEAK  4(2Q21.2) WILD-TYPE
  CLUS_1                           6                            78
  CLUS_2                           7                            72
  CLUS_3                          19                            77
  CLUS_4                          17                            75
  CLUS_5                           9                            69
  CLUS_6                          18                            57
  CLUS_7                           2                            16
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q21.2) MUTATED        6      5      5     11
  DEL PEAK  4(2Q21.2) WILD-TYPE     47     46     32     54
D33V3, multiclass
        clus
vv       DEL PEAK  4(2Q21.2) MUTATED DEL PEAK  4(2Q21.2) WILD-TYPE
  CLUS_1                           6                            47
  CLUS_2                           5                            46
  CLUS_3                           5                            32
  CLUS_4                          11                            54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q21.2) MUTATED       11      7      9
  DEL PEAK  4(2Q21.2) WILD-TYPE     65     75     39
D33V4, multiclass
        clus
vv       DEL PEAK  4(2Q21.2) MUTATED DEL PEAK  4(2Q21.2) WILD-TYPE
  CLUS_1                          11                            65
  CLUS_2                           7                            75
  CLUS_3                           9                            39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q21.2) MUTATED       16     26     33
  DEL PEAK  4(2Q21.2) WILD-TYPE    125    186    128
D33V5, multiclass
        clus
vv       DEL PEAK  4(2Q21.2) MUTATED DEL PEAK  4(2Q21.2) WILD-TYPE
  CLUS_1                          16                           125
  CLUS_2                          26                           186
  CLUS_3                          33                           128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q21.2) MUTATED       24      6     40      5
  DEL PEAK  4(2Q21.2) WILD-TYPE    152     97    130     60
D33V6, multiclass
        clus
vv       DEL PEAK  4(2Q21.2) MUTATED DEL PEAK  4(2Q21.2) WILD-TYPE
  CLUS_1                          24                           152
  CLUS_2                           6                            97
  CLUS_3                          40                           130
  CLUS_4                           5                            60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q21.2) MUTATED       33     33     11
  DEL PEAK  4(2Q21.2) WILD-TYPE    188    119    134
D33V7, multiclass
        clus
vv       DEL PEAK  4(2Q21.2) MUTATED DEL PEAK  4(2Q21.2) WILD-TYPE
  CLUS_1                          33                           188
  CLUS_2                          33                           119
  CLUS_3                          11                           134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q21.2) MUTATED       24     27     26
  DEL PEAK  4(2Q21.2) WILD-TYPE    166    115    160
D33V8, multiclass
        clus
vv       DEL PEAK  4(2Q21.2) MUTATED DEL PEAK  4(2Q21.2) WILD-TYPE
  CLUS_1                          24                           166
  CLUS_2                          27                           115
  CLUS_3                          26                           160
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(2Q21.2) MUTATED        6     30     12     17      3
  DEL PEAK  4(2Q21.2) WILD-TYPE     66    110     86     99     44
D33V9, multiclass
        clus
vv       DEL PEAK  4(2Q21.2) MUTATED DEL PEAK  4(2Q21.2) WILD-TYPE
  CLUS_1                           6                            66
  CLUS_2                          30                           110
  CLUS_3                          12                            86
  CLUS_4                          17                            99
  CLUS_5                           3                            44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q21.2) MUTATED       14     34     20
  DEL PEAK  4(2Q21.2) WILD-TYPE    126    210     69
D33V10, multiclass
        clus
vv       DEL PEAK  4(2Q21.2) MUTATED DEL PEAK  4(2Q21.2) WILD-TYPE
  CLUS_1                          14                           126
  CLUS_2                          34                           210
  CLUS_3                          20                            69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(34) Variable = DEL PEAK  5(2Q22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(2Q22.1) MUTATED       42     39     30     10
  DEL PEAK  5(2Q22.1) WILD-TYPE    113     96    159     33
D34V1, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                          42                           113
  CLUS_2                          39                            96
  CLUS_3                          30                           159
  CLUS_4                          10                            33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(2Q22.1) MUTATED       10     16     23     38     11     22
  DEL PEAK  5(2Q22.1) WILD-TYPE     74     63     73     54     67     53
                               vv
clus                            CLUS_7
  DEL PEAK  5(2Q22.1) MUTATED        1
  DEL PEAK  5(2Q22.1) WILD-TYPE     17
D34V2, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                          10                            74
  CLUS_2                          16                            63
  CLUS_3                          23                            73
  CLUS_4                          38                            54
  CLUS_5                          11                            67
  CLUS_6                          22                            53
  CLUS_7                           1                            17
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(2Q22.1) MUTATED       10     15      6     11
  DEL PEAK  5(2Q22.1) WILD-TYPE     43     36     31     54
D34V3, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                          10                            43
  CLUS_2                          15                            36
  CLUS_3                           6                            31
  CLUS_4                          11                            54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q22.1) MUTATED       14     17     11
  DEL PEAK  5(2Q22.1) WILD-TYPE     62     65     37
D34V4, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                          14                            62
  CLUS_2                          17                            65
  CLUS_3                          11                            37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q22.1) MUTATED       26     49     43
  DEL PEAK  5(2Q22.1) WILD-TYPE    115    163    118
D34V5, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                          26                           115
  CLUS_2                          49                           163
  CLUS_3                          43                           118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(2Q22.1) MUTATED       34     30     47      7
  DEL PEAK  5(2Q22.1) WILD-TYPE    142     73    123     58
D34V6, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                          34                           142
  CLUS_2                          30                            73
  CLUS_3                          47                           123
  CLUS_4                           7                            58
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q22.1) MUTATED       60     34     27
  DEL PEAK  5(2Q22.1) WILD-TYPE    161    118    118
D34V7, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                          60                           161
  CLUS_2                          34                           118
  CLUS_3                          27                           118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q22.1) MUTATED       39     49     33
  DEL PEAK  5(2Q22.1) WILD-TYPE    151     93    153
D34V8, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                          39                           151
  CLUS_2                          49                            93
  CLUS_3                          33                           153
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(2Q22.1) MUTATED       19     38     23     29      3
  DEL PEAK  5(2Q22.1) WILD-TYPE     53    102     75     87     44
D34V9, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                          19                            53
  CLUS_2                          38                           102
  CLUS_3                          23                            75
  CLUS_4                          29                            87
  CLUS_5                           3                            44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q22.1) MUTATED       24     60     28
  DEL PEAK  5(2Q22.1) WILD-TYPE    116    184     61
D34V10, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                          24                           116
  CLUS_2                          60                           184
  CLUS_3                          28                            61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(35) Variable = DEL PEAK  6(2Q36.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(2Q36.2) MUTATED       48     64     32     13
  DEL PEAK  6(2Q36.2) WILD-TYPE    107     71    157     30
D35V1, multiclass
        clus
vv       DEL PEAK  6(2Q36.2) MUTATED DEL PEAK  6(2Q36.2) WILD-TYPE
  CLUS_1                          48                           107
  CLUS_2                          64                            71
  CLUS_3                          32                           157
  CLUS_4                          13                            30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(2Q36.2) MUTATED        7     25     26     49     24     21
  DEL PEAK  6(2Q36.2) WILD-TYPE     77     54     70     43     54     54
                               vv
clus                            CLUS_7
  DEL PEAK  6(2Q36.2) MUTATED        5
  DEL PEAK  6(2Q36.2) WILD-TYPE     13
D35V2, multiclass
        clus
vv       DEL PEAK  6(2Q36.2) MUTATED DEL PEAK  6(2Q36.2) WILD-TYPE
  CLUS_1                           7                            77
  CLUS_2                          25                            54
  CLUS_3                          26                            70
  CLUS_4                          49                            43
  CLUS_5                          24                            54
  CLUS_6                          21                            54
  CLUS_7                           5                            13
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(2Q36.2) MUTATED       15     23      8     18
  DEL PEAK  6(2Q36.2) WILD-TYPE     38     28     29     47
D35V3, multiclass
        clus
vv       DEL PEAK  6(2Q36.2) MUTATED DEL PEAK  6(2Q36.2) WILD-TYPE
  CLUS_1                          15                            38
  CLUS_2                          23                            28
  CLUS_3                           8                            29
  CLUS_4                          18                            47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(2Q36.2) MUTATED       22     27     15
  DEL PEAK  6(2Q36.2) WILD-TYPE     54     55     33
D35V4, multiclass
        clus
vv       DEL PEAK  6(2Q36.2) MUTATED DEL PEAK  6(2Q36.2) WILD-TYPE
  CLUS_1                          22                            54
  CLUS_2                          27                            55
  CLUS_3                          15                            33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(2Q36.2) MUTATED       35     78     41
  DEL PEAK  6(2Q36.2) WILD-TYPE    106    134    120
D35V5, multiclass
        clus
vv       DEL PEAK  6(2Q36.2) MUTATED DEL PEAK  6(2Q36.2) WILD-TYPE
  CLUS_1                          35                           106
  CLUS_2                          78                           134
  CLUS_3                          41                           120
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(2Q36.2) MUTATED       50     42     46     16
  DEL PEAK  6(2Q36.2) WILD-TYPE    126     61    124     49
D35V6, multiclass
        clus
vv       DEL PEAK  6(2Q36.2) MUTATED DEL PEAK  6(2Q36.2) WILD-TYPE
  CLUS_1                          50                           126
  CLUS_2                          42                            61
  CLUS_3                          46                           124
  CLUS_4                          16                            49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(2Q36.2) MUTATED       77     43     34
  DEL PEAK  6(2Q36.2) WILD-TYPE    144    109    111
D35V7, multiclass
        clus
vv       DEL PEAK  6(2Q36.2) MUTATED DEL PEAK  6(2Q36.2) WILD-TYPE
  CLUS_1                          77                           144
  CLUS_2                          43                           109
  CLUS_3                          34                           111
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(2Q36.2) MUTATED       49     55     50
  DEL PEAK  6(2Q36.2) WILD-TYPE    141     87    136
D35V8, multiclass
        clus
vv       DEL PEAK  6(2Q36.2) MUTATED DEL PEAK  6(2Q36.2) WILD-TYPE
  CLUS_1                          49                           141
  CLUS_2                          55                            87
  CLUS_3                          50                           136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(2Q36.2) MUTATED       25     40     34     32      9
  DEL PEAK  6(2Q36.2) WILD-TYPE     47    100     64     84     38
D35V9, multiclass
        clus
vv       DEL PEAK  6(2Q36.2) MUTATED DEL PEAK  6(2Q36.2) WILD-TYPE
  CLUS_1                          25                            47
  CLUS_2                          40                           100
  CLUS_3                          34                            64
  CLUS_4                          32                            84
  CLUS_5                           9                            38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(2Q36.2) MUTATED       32     84     24
  DEL PEAK  6(2Q36.2) WILD-TYPE    108    160     65
D35V10, multiclass
        clus
vv       DEL PEAK  6(2Q36.2) MUTATED DEL PEAK  6(2Q36.2) WILD-TYPE
  CLUS_1                          32                           108
  CLUS_2                          84                           160
  CLUS_3                          24                            65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(36) Variable = DEL PEAK  7(3P26.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3P26.2) MUTATED      144    115     60     29
  DEL PEAK  7(3P26.2) WILD-TYPE     11     20    129     14
D36V1, multiclass
        clus
vv       DEL PEAK  7(3P26.2) MUTATED DEL PEAK  7(3P26.2) WILD-TYPE
  CLUS_1                         144                            11
  CLUS_2                         115                            20
  CLUS_3                          60                           129
  CLUS_4                          29                            14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(3P26.2) MUTATED       50     67     87     77     19     31
  DEL PEAK  7(3P26.2) WILD-TYPE     34     12      9     15     59     44
                               vv
clus                            CLUS_7
  DEL PEAK  7(3P26.2) MUTATED       17
  DEL PEAK  7(3P26.2) WILD-TYPE      1
D36V2, multiclass
        clus
vv       DEL PEAK  7(3P26.2) MUTATED DEL PEAK  7(3P26.2) WILD-TYPE
  CLUS_1                          50                            34
  CLUS_2                          67                            12
  CLUS_3                          87                             9
  CLUS_4                          77                            15
  CLUS_5                          19                            59
  CLUS_6                          31                            44
  CLUS_7                          17                             1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3P26.2) MUTATED       38     38     25     52
  DEL PEAK  7(3P26.2) WILD-TYPE     15     13     12     13
D36V3, multiclass
        clus
vv       DEL PEAK  7(3P26.2) MUTATED DEL PEAK  7(3P26.2) WILD-TYPE
  CLUS_1                          38                            15
  CLUS_2                          38                            13
  CLUS_3                          25                            12
  CLUS_4                          52                            13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3P26.2) MUTATED       52     66     35
  DEL PEAK  7(3P26.2) WILD-TYPE     24     16     13
D36V4, multiclass
        clus
vv       DEL PEAK  7(3P26.2) MUTATED DEL PEAK  7(3P26.2) WILD-TYPE
  CLUS_1                          52                            24
  CLUS_2                          66                            16
  CLUS_3                          35                            13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3P26.2) MUTATED      113    125    105
  DEL PEAK  7(3P26.2) WILD-TYPE     28     87     56
D36V5, multiclass
        clus
vv       DEL PEAK  7(3P26.2) MUTATED DEL PEAK  7(3P26.2) WILD-TYPE
  CLUS_1                         113                            28
  CLUS_2                         125                            87
  CLUS_3                         105                            56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3P26.2) MUTATED      134     83    107     19
  DEL PEAK  7(3P26.2) WILD-TYPE     42     20     63     46
D36V6, multiclass
        clus
vv       DEL PEAK  7(3P26.2) MUTATED DEL PEAK  7(3P26.2) WILD-TYPE
  CLUS_1                         134                            42
  CLUS_2                          83                            20
  CLUS_3                         107                            63
  CLUS_4                          19                            46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3P26.2) MUTATED      146     91    109
  DEL PEAK  7(3P26.2) WILD-TYPE     75     61     36
D36V7, multiclass
        clus
vv       DEL PEAK  7(3P26.2) MUTATED DEL PEAK  7(3P26.2) WILD-TYPE
  CLUS_1                         146                            75
  CLUS_2                          91                            61
  CLUS_3                         109                            36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3P26.2) MUTATED      144    106     96
  DEL PEAK  7(3P26.2) WILD-TYPE     46     36     90
D36V8, multiclass
        clus
vv       DEL PEAK  7(3P26.2) MUTATED DEL PEAK  7(3P26.2) WILD-TYPE
  CLUS_1                         144                            46
  CLUS_2                         106                            36
  CLUS_3                          96                            90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(3P26.2) MUTATED       57     91     64     86     17
  DEL PEAK  7(3P26.2) WILD-TYPE     15     49     34     30     30
D36V9, multiclass
        clus
vv       DEL PEAK  7(3P26.2) MUTATED DEL PEAK  7(3P26.2) WILD-TYPE
  CLUS_1                          57                            15
  CLUS_2                          91                            49
  CLUS_3                          64                            34
  CLUS_4                          86                            30
  CLUS_5                          17                            30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3P26.2) MUTATED      106    147     62
  DEL PEAK  7(3P26.2) WILD-TYPE     34     97     27
D36V10, multiclass
        clus
vv       DEL PEAK  7(3P26.2) MUTATED DEL PEAK  7(3P26.2) WILD-TYPE
  CLUS_1                         106                            34
  CLUS_2                         147                            97
  CLUS_3                          62                            27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(37) Variable = DEL PEAK  8(3P24.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(3P24.1) MUTATED      145    124     69     30
  DEL PEAK  8(3P24.1) WILD-TYPE     10     11    120     13
D37V1, multiclass
        clus
vv       DEL PEAK  8(3P24.1) MUTATED DEL PEAK  8(3P24.1) WILD-TYPE
  CLUS_1                         145                            10
  CLUS_2                         124                            11
  CLUS_3                          69                           120
  CLUS_4                          30                            13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(3P24.1) MUTATED       51     71     87     82     29     31
  DEL PEAK  8(3P24.1) WILD-TYPE     33      8      9     10     49     44
                               vv
clus                            CLUS_7
  DEL PEAK  8(3P24.1) MUTATED       17
  DEL PEAK  8(3P24.1) WILD-TYPE      1
D37V2, multiclass
        clus
vv       DEL PEAK  8(3P24.1) MUTATED DEL PEAK  8(3P24.1) WILD-TYPE
  CLUS_1                          51                            33
  CLUS_2                          71                             8
  CLUS_3                          87                             9
  CLUS_4                          82                            10
  CLUS_5                          29                            49
  CLUS_6                          31                            44
  CLUS_7                          17                             1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(3P24.1) MUTATED       38     41     26     53
  DEL PEAK  8(3P24.1) WILD-TYPE     15     10     11     12
D37V3, multiclass
        clus
vv       DEL PEAK  8(3P24.1) MUTATED DEL PEAK  8(3P24.1) WILD-TYPE
  CLUS_1                          38                            15
  CLUS_2                          41                            10
  CLUS_3                          26                            11
  CLUS_4                          53                            12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3P24.1) MUTATED       54     69     35
  DEL PEAK  8(3P24.1) WILD-TYPE     22     13     13
D37V4, multiclass
        clus
vv       DEL PEAK  8(3P24.1) MUTATED DEL PEAK  8(3P24.1) WILD-TYPE
  CLUS_1                          54                            22
  CLUS_2                          69                            13
  CLUS_3                          35                            13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3P24.1) MUTATED      115    142    106
  DEL PEAK  8(3P24.1) WILD-TYPE     26     70     55
D37V5, multiclass
        clus
vv       DEL PEAK  8(3P24.1) MUTATED DEL PEAK  8(3P24.1) WILD-TYPE
  CLUS_1                         115                            26
  CLUS_2                         142                            70
  CLUS_3                         106                            55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(3P24.1) MUTATED      137     91    108     27
  DEL PEAK  8(3P24.1) WILD-TYPE     39     12     62     38
D37V6, multiclass
        clus
vv       DEL PEAK  8(3P24.1) MUTATED DEL PEAK  8(3P24.1) WILD-TYPE
  CLUS_1                         137                            39
  CLUS_2                          91                            12
  CLUS_3                         108                            62
  CLUS_4                          27                            38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3P24.1) MUTATED      162     91    112
  DEL PEAK  8(3P24.1) WILD-TYPE     59     61     33
D37V7, multiclass
        clus
vv       DEL PEAK  8(3P24.1) MUTATED DEL PEAK  8(3P24.1) WILD-TYPE
  CLUS_1                         162                            59
  CLUS_2                          91                            61
  CLUS_3                         112                            33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3P24.1) MUTATED      147    110    108
  DEL PEAK  8(3P24.1) WILD-TYPE     43     32     78
D37V8, multiclass
        clus
vv       DEL PEAK  8(3P24.1) MUTATED DEL PEAK  8(3P24.1) WILD-TYPE
  CLUS_1                         147                            43
  CLUS_2                         110                            32
  CLUS_3                         108                            78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(3P24.1) MUTATED       60     91     72     89     20
  DEL PEAK  8(3P24.1) WILD-TYPE     12     49     26     27     27
D37V9, multiclass
        clus
vv       DEL PEAK  8(3P24.1) MUTATED DEL PEAK  8(3P24.1) WILD-TYPE
  CLUS_1                          60                            12
  CLUS_2                          91                            49
  CLUS_3                          72                            26
  CLUS_4                          89                            27
  CLUS_5                          20                            27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3P24.1) MUTATED      109    159     64
  DEL PEAK  8(3P24.1) WILD-TYPE     31     85     25
D37V10, multiclass
        clus
vv       DEL PEAK  8(3P24.1) MUTATED DEL PEAK  8(3P24.1) WILD-TYPE
  CLUS_1                         109                            31
  CLUS_2                         159                            85
  CLUS_3                          64                            25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(38) Variable = DEL PEAK  9(3P14.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(3P14.2) MUTATED      146    128     67     31
  DEL PEAK  9(3P14.2) WILD-TYPE      9      7    122     12
D38V1, multiclass
        clus
vv       DEL PEAK  9(3P14.2) MUTATED DEL PEAK  9(3P14.2) WILD-TYPE
  CLUS_1                         146                             9
  CLUS_2                         128                             7
  CLUS_3                          67                           122
  CLUS_4                          31                            12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(3P14.2) MUTATED       51     72     85     84     34     29
  DEL PEAK  9(3P14.2) WILD-TYPE     33      7     11      8     44     46
                               vv
clus                            CLUS_7
  DEL PEAK  9(3P14.2) MUTATED       17
  DEL PEAK  9(3P14.2) WILD-TYPE      1
D38V2, multiclass
        clus
vv       DEL PEAK  9(3P14.2) MUTATED DEL PEAK  9(3P14.2) WILD-TYPE
  CLUS_1                          51                            33
  CLUS_2                          72                             7
  CLUS_3                          85                            11
  CLUS_4                          84                             8
  CLUS_5                          34                            44
  CLUS_6                          29                            46
  CLUS_7                          17                             1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(3P14.2) MUTATED       39     42     27     52
  DEL PEAK  9(3P14.2) WILD-TYPE     14      9     10     13
D38V3, multiclass
        clus
vv       DEL PEAK  9(3P14.2) MUTATED DEL PEAK  9(3P14.2) WILD-TYPE
  CLUS_1                          39                            14
  CLUS_2                          42                             9
  CLUS_3                          27                            10
  CLUS_4                          52                            13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(3P14.2) MUTATED       55     69     36
  DEL PEAK  9(3P14.2) WILD-TYPE     21     13     12
D38V4, multiclass
        clus
vv       DEL PEAK  9(3P14.2) MUTATED DEL PEAK  9(3P14.2) WILD-TYPE
  CLUS_1                          55                            21
  CLUS_2                          69                            13
  CLUS_3                          36                            12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(3P14.2) MUTATED      113    148    106
  DEL PEAK  9(3P14.2) WILD-TYPE     28     64     55
D38V5, multiclass
        clus
vv       DEL PEAK  9(3P14.2) MUTATED DEL PEAK  9(3P14.2) WILD-TYPE
  CLUS_1                         113                            28
  CLUS_2                         148                            64
  CLUS_3                         106                            55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(3P14.2) MUTATED      135     93    108     31
  DEL PEAK  9(3P14.2) WILD-TYPE     41     10     62     34
D38V6, multiclass
        clus
vv       DEL PEAK  9(3P14.2) MUTATED DEL PEAK  9(3P14.2) WILD-TYPE
  CLUS_1                         135                            41
  CLUS_2                          93                            10
  CLUS_3                         108                            62
  CLUS_4                          31                            34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(3P14.2) MUTATED      162     98    109
  DEL PEAK  9(3P14.2) WILD-TYPE     59     54     36
D38V7, multiclass
        clus
vv       DEL PEAK  9(3P14.2) MUTATED DEL PEAK  9(3P14.2) WILD-TYPE
  CLUS_1                         162                            59
  CLUS_2                          98                            54
  CLUS_3                         109                            36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(3P14.2) MUTATED      145    111    113
  DEL PEAK  9(3P14.2) WILD-TYPE     45     31     73
D38V8, multiclass
        clus
vv       DEL PEAK  9(3P14.2) MUTATED DEL PEAK  9(3P14.2) WILD-TYPE
  CLUS_1                         145                            45
  CLUS_2                         111                            31
  CLUS_3                         113                            73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(3P14.2) MUTATED       58     91     77     90     19
  DEL PEAK  9(3P14.2) WILD-TYPE     14     49     21     26     28
D38V9, multiclass
        clus
vv       DEL PEAK  9(3P14.2) MUTATED DEL PEAK  9(3P14.2) WILD-TYPE
  CLUS_1                          58                            14
  CLUS_2                          91                            49
  CLUS_3                          77                            21
  CLUS_4                          90                            26
  CLUS_5                          19                            28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(3P14.2) MUTATED      106    167     62
  DEL PEAK  9(3P14.2) WILD-TYPE     34     77     27
D38V10, multiclass
        clus
vv       DEL PEAK  9(3P14.2) MUTATED DEL PEAK  9(3P14.2) WILD-TYPE
  CLUS_1                         106                            34
  CLUS_2                         167                            77
  CLUS_3                          62                            27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(39) Variable = DEL PEAK 10(3P12.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(3P12.1) MUTATED      139    124     52     28
  DEL PEAK 10(3P12.1) WILD-TYPE     16     11    137     15
D39V1, multiclass
        clus
vv       DEL PEAK 10(3P12.1) MUTATED DEL PEAK 10(3P12.1) WILD-TYPE
  CLUS_1                         139                            16
  CLUS_2                         124                            11
  CLUS_3                          52                           137
  CLUS_4                          28                            15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(3P12.1) MUTATED       47     69     77     83     24     27
  DEL PEAK 10(3P12.1) WILD-TYPE     37     10     19      9     54     48
                               vv
clus                            CLUS_7
  DEL PEAK 10(3P12.1) MUTATED       16
  DEL PEAK 10(3P12.1) WILD-TYPE      2
D39V2, multiclass
        clus
vv       DEL PEAK 10(3P12.1) MUTATED DEL PEAK 10(3P12.1) WILD-TYPE
  CLUS_1                          47                            37
  CLUS_2                          69                            10
  CLUS_3                          77                            19
  CLUS_4                          83                             9
  CLUS_5                          24                            54
  CLUS_6                          27                            48
  CLUS_7                          16                             2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(3P12.1) MUTATED       38     38     25     49
  DEL PEAK 10(3P12.1) WILD-TYPE     15     13     12     16
D39V3, multiclass
        clus
vv       DEL PEAK 10(3P12.1) MUTATED DEL PEAK 10(3P12.1) WILD-TYPE
  CLUS_1                          38                            15
  CLUS_2                          38                            13
  CLUS_3                          25                            12
  CLUS_4                          49                            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(3P12.1) MUTATED       54     61     35
  DEL PEAK 10(3P12.1) WILD-TYPE     22     21     13
D39V4, multiclass
        clus
vv       DEL PEAK 10(3P12.1) MUTATED DEL PEAK 10(3P12.1) WILD-TYPE
  CLUS_1                          54                            22
  CLUS_2                          61                            21
  CLUS_3                          35                            13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(3P12.1) MUTATED      105    138     96
  DEL PEAK 10(3P12.1) WILD-TYPE     36     74     65
D39V5, multiclass
        clus
vv       DEL PEAK 10(3P12.1) MUTATED DEL PEAK 10(3P12.1) WILD-TYPE
  CLUS_1                         105                            36
  CLUS_2                         138                            74
  CLUS_3                          96                            65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(3P12.1) MUTATED      124     88    104     23
  DEL PEAK 10(3P12.1) WILD-TYPE     52     15     66     42
D39V6, multiclass
        clus
vv       DEL PEAK 10(3P12.1) MUTATED DEL PEAK 10(3P12.1) WILD-TYPE
  CLUS_1                         124                            52
  CLUS_2                          88                            15
  CLUS_3                         104                            66
  CLUS_4                          23                            42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(3P12.1) MUTATED      152     88    100
  DEL PEAK 10(3P12.1) WILD-TYPE     69     64     45
D39V7, multiclass
        clus
vv       DEL PEAK 10(3P12.1) MUTATED DEL PEAK 10(3P12.1) WILD-TYPE
  CLUS_1                         152                            69
  CLUS_2                          88                            64
  CLUS_3                         100                            45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(3P12.1) MUTATED      130    107    103
  DEL PEAK 10(3P12.1) WILD-TYPE     60     35     83
D39V8, multiclass
        clus
vv       DEL PEAK 10(3P12.1) MUTATED DEL PEAK 10(3P12.1) WILD-TYPE
  CLUS_1                         130                            60
  CLUS_2                         107                            35
  CLUS_3                         103                            83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(3P12.1) MUTATED       56     84     69     83     15
  DEL PEAK 10(3P12.1) WILD-TYPE     16     56     29     33     32
D39V9, multiclass
        clus
vv       DEL PEAK 10(3P12.1) MUTATED DEL PEAK 10(3P12.1) WILD-TYPE
  CLUS_1                          56                            16
  CLUS_2                          84                            56
  CLUS_3                          69                            29
  CLUS_4                          83                            33
  CLUS_5                          15                            32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(3P12.1) MUTATED       96    153     58
  DEL PEAK 10(3P12.1) WILD-TYPE     44     91     31
D39V10, multiclass
        clus
vv       DEL PEAK 10(3P12.1) MUTATED DEL PEAK 10(3P12.1) WILD-TYPE
  CLUS_1                          96                            44
  CLUS_2                         153                            91
  CLUS_3                          58                            31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(40) Variable = DEL PEAK 11(4P15.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(4P15.2) MUTATED       71     94     29     14
  DEL PEAK 11(4P15.2) WILD-TYPE     84     41    160     29
D40V1, multiclass
        clus
vv       DEL PEAK 11(4P15.2) MUTATED DEL PEAK 11(4P15.2) WILD-TYPE
  CLUS_1                          71                            84
  CLUS_2                          94                            41
  CLUS_3                          29                           160
  CLUS_4                          14                            29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(4P15.2) MUTATED       21     46     29     66     21     15
  DEL PEAK 11(4P15.2) WILD-TYPE     63     33     67     26     57     60
                               vv
clus                            CLUS_7
  DEL PEAK 11(4P15.2) MUTATED       10
  DEL PEAK 11(4P15.2) WILD-TYPE      8
D40V2, multiclass
        clus
vv       DEL PEAK 11(4P15.2) MUTATED DEL PEAK 11(4P15.2) WILD-TYPE
  CLUS_1                          21                            63
  CLUS_2                          46                            33
  CLUS_3                          29                            67
  CLUS_4                          66                            26
  CLUS_5                          21                            57
  CLUS_6                          15                            60
  CLUS_7                          10                             8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(4P15.2) MUTATED       26     31     12     22
  DEL PEAK 11(4P15.2) WILD-TYPE     27     20     25     43
D40V3, multiclass
        clus
vv       DEL PEAK 11(4P15.2) MUTATED DEL PEAK 11(4P15.2) WILD-TYPE
  CLUS_1                          26                            27
  CLUS_2                          31                            20
  CLUS_3                          12                            25
  CLUS_4                          22                            43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(4P15.2) MUTATED       34     40     17
  DEL PEAK 11(4P15.2) WILD-TYPE     42     42     31
D40V4, multiclass
        clus
vv       DEL PEAK 11(4P15.2) MUTATED DEL PEAK 11(4P15.2) WILD-TYPE
  CLUS_1                          34                            42
  CLUS_2                          40                            42
  CLUS_3                          17                            31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(4P15.2) MUTATED       63    100     42
  DEL PEAK 11(4P15.2) WILD-TYPE     78    112    119
D40V5, multiclass
        clus
vv       DEL PEAK 11(4P15.2) MUTATED DEL PEAK 11(4P15.2) WILD-TYPE
  CLUS_1                          63                            78
  CLUS_2                         100                           112
  CLUS_3                          42                           119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(4P15.2) MUTATED       74     64     49     18
  DEL PEAK 11(4P15.2) WILD-TYPE    102     39    121     47
D40V6, multiclass
        clus
vv       DEL PEAK 11(4P15.2) MUTATED DEL PEAK 11(4P15.2) WILD-TYPE
  CLUS_1                          74                           102
  CLUS_2                          64                            39
  CLUS_3                          49                           121
  CLUS_4                          18                            47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(4P15.2) MUTATED      105     50     51
  DEL PEAK 11(4P15.2) WILD-TYPE    116    102     94
D40V7, multiclass
        clus
vv       DEL PEAK 11(4P15.2) MUTATED DEL PEAK 11(4P15.2) WILD-TYPE
  CLUS_1                         105                           116
  CLUS_2                          50                           102
  CLUS_3                          51                            94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(4P15.2) MUTATED       76     68     62
  DEL PEAK 11(4P15.2) WILD-TYPE    114     74    124
D40V8, multiclass
        clus
vv       DEL PEAK 11(4P15.2) MUTATED DEL PEAK 11(4P15.2) WILD-TYPE
  CLUS_1                          76                           114
  CLUS_2                          68                            74
  CLUS_3                          62                           124
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(4P15.2) MUTATED       38     40     48     48     11
  DEL PEAK 11(4P15.2) WILD-TYPE     34    100     50     68     36
D40V9, multiclass
        clus
vv       DEL PEAK 11(4P15.2) MUTATED DEL PEAK 11(4P15.2) WILD-TYPE
  CLUS_1                          38                            34
  CLUS_2                          40                           100
  CLUS_3                          48                            50
  CLUS_4                          48                            68
  CLUS_5                          11                            36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(4P15.2) MUTATED       64     97     24
  DEL PEAK 11(4P15.2) WILD-TYPE     76    147     65
D40V10, multiclass
        clus
vv       DEL PEAK 11(4P15.2) MUTATED DEL PEAK 11(4P15.2) WILD-TYPE
  CLUS_1                          64                            76
  CLUS_2                          97                           147
  CLUS_3                          24                            65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(41) Variable = DEL PEAK 12(4Q21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(4Q21.3) MUTATED       54     68     21     13
  DEL PEAK 12(4Q21.3) WILD-TYPE    101     67    168     30
D41V1, multiclass
        clus
vv       DEL PEAK 12(4Q21.3) MUTATED DEL PEAK 12(4Q21.3) WILD-TYPE
  CLUS_1                          54                           101
  CLUS_2                          68                            67
  CLUS_3                          21                           168
  CLUS_4                          13                            30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(4Q21.3) MUTATED       15     29     29     49     17     14
  DEL PEAK 12(4Q21.3) WILD-TYPE     69     50     67     43     61     61
                               vv
clus                            CLUS_7
  DEL PEAK 12(4Q21.3) MUTATED        3
  DEL PEAK 12(4Q21.3) WILD-TYPE     15
D41V2, multiclass
        clus
vv       DEL PEAK 12(4Q21.3) MUTATED DEL PEAK 12(4Q21.3) WILD-TYPE
  CLUS_1                          15                            69
  CLUS_2                          29                            50
  CLUS_3                          29                            67
  CLUS_4                          49                            43
  CLUS_5                          17                            61
  CLUS_6                          14                            61
  CLUS_7                           3                            15
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(4Q21.3) MUTATED       14     21     10     17
  DEL PEAK 12(4Q21.3) WILD-TYPE     39     30     27     48
D41V3, multiclass
        clus
vv       DEL PEAK 12(4Q21.3) MUTATED DEL PEAK 12(4Q21.3) WILD-TYPE
  CLUS_1                          14                            39
  CLUS_2                          21                            30
  CLUS_3                          10                            27
  CLUS_4                          17                            48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(4Q21.3) MUTATED       21     32      9
  DEL PEAK 12(4Q21.3) WILD-TYPE     55     50     39
D41V4, multiclass
        clus
vv       DEL PEAK 12(4Q21.3) MUTATED DEL PEAK 12(4Q21.3) WILD-TYPE
  CLUS_1                          21                            55
  CLUS_2                          32                            50
  CLUS_3                           9                            39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(4Q21.3) MUTATED       48     71     33
  DEL PEAK 12(4Q21.3) WILD-TYPE     93    141    128
D41V5, multiclass
        clus
vv       DEL PEAK 12(4Q21.3) MUTATED DEL PEAK 12(4Q21.3) WILD-TYPE
  CLUS_1                          48                            93
  CLUS_2                          71                           141
  CLUS_3                          33                           128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(4Q21.3) MUTATED       63     44     30     15
  DEL PEAK 12(4Q21.3) WILD-TYPE    113     59    140     50
D41V6, multiclass
        clus
vv       DEL PEAK 12(4Q21.3) MUTATED DEL PEAK 12(4Q21.3) WILD-TYPE
  CLUS_1                          63                           113
  CLUS_2                          44                            59
  CLUS_3                          30                           140
  CLUS_4                          15                            50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(4Q21.3) MUTATED       71     39     43
  DEL PEAK 12(4Q21.3) WILD-TYPE    150    113    102
D41V7, multiclass
        clus
vv       DEL PEAK 12(4Q21.3) MUTATED DEL PEAK 12(4Q21.3) WILD-TYPE
  CLUS_1                          71                           150
  CLUS_2                          39                           113
  CLUS_3                          43                           102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(4Q21.3) MUTATED       63     48     42
  DEL PEAK 12(4Q21.3) WILD-TYPE    127     94    144
D41V8, multiclass
        clus
vv       DEL PEAK 12(4Q21.3) MUTATED DEL PEAK 12(4Q21.3) WILD-TYPE
  CLUS_1                          63                           127
  CLUS_2                          48                            94
  CLUS_3                          42                           144
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(4Q21.3) MUTATED       25     40     34     37      8
  DEL PEAK 12(4Q21.3) WILD-TYPE     47    100     64     79     39
D41V9, multiclass
        clus
vv       DEL PEAK 12(4Q21.3) MUTATED DEL PEAK 12(4Q21.3) WILD-TYPE
  CLUS_1                          25                            47
  CLUS_2                          40                           100
  CLUS_3                          34                            64
  CLUS_4                          37                            79
  CLUS_5                           8                            39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(4Q21.3) MUTATED       44     74     26
  DEL PEAK 12(4Q21.3) WILD-TYPE     96    170     63
D41V10, multiclass
        clus
vv       DEL PEAK 12(4Q21.3) MUTATED DEL PEAK 12(4Q21.3) WILD-TYPE
  CLUS_1                          44                            96
  CLUS_2                          74                           170
  CLUS_3                          26                            63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(42) Variable = DEL PEAK 13(4Q22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(4Q22.1) MUTATED       62     73     21     13
  DEL PEAK 13(4Q22.1) WILD-TYPE     93     62    168     30
D42V1, multiclass
        clus
vv       DEL PEAK 13(4Q22.1) MUTATED DEL PEAK 13(4Q22.1) WILD-TYPE
  CLUS_1                          62                            93
  CLUS_2                          73                            62
  CLUS_3                          21                           168
  CLUS_4                          13                            30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(4Q22.1) MUTATED       12     31     29     59     18     15
  DEL PEAK 13(4Q22.1) WILD-TYPE     72     48     67     33     60     60
                               vv
clus                            CLUS_7
  DEL PEAK 13(4Q22.1) MUTATED        5
  DEL PEAK 13(4Q22.1) WILD-TYPE     13
D42V2, multiclass
        clus
vv       DEL PEAK 13(4Q22.1) MUTATED DEL PEAK 13(4Q22.1) WILD-TYPE
  CLUS_1                          12                            72
  CLUS_2                          31                            48
  CLUS_3                          29                            67
  CLUS_4                          59                            33
  CLUS_5                          18                            60
  CLUS_6                          15                            60
  CLUS_7                           5                            13
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(4Q22.1) MUTATED       17     23     14     18
  DEL PEAK 13(4Q22.1) WILD-TYPE     36     28     23     47
D42V3, multiclass
        clus
vv       DEL PEAK 13(4Q22.1) MUTATED DEL PEAK 13(4Q22.1) WILD-TYPE
  CLUS_1                          17                            36
  CLUS_2                          23                            28
  CLUS_3                          14                            23
  CLUS_4                          18                            47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(4Q22.1) MUTATED       26     35     11
  DEL PEAK 13(4Q22.1) WILD-TYPE     50     47     37
D42V4, multiclass
        clus
vv       DEL PEAK 13(4Q22.1) MUTATED DEL PEAK 13(4Q22.1) WILD-TYPE
  CLUS_1                          26                            50
  CLUS_2                          35                            47
  CLUS_3                          11                            37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(4Q22.1) MUTATED       51     78     37
  DEL PEAK 13(4Q22.1) WILD-TYPE     90    134    124
D42V5, multiclass
        clus
vv       DEL PEAK 13(4Q22.1) MUTATED DEL PEAK 13(4Q22.1) WILD-TYPE
  CLUS_1                          51                            90
  CLUS_2                          78                           134
  CLUS_3                          37                           124
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(4Q22.1) MUTATED       63     48     40     15
  DEL PEAK 13(4Q22.1) WILD-TYPE    113     55    130     50
D42V6, multiclass
        clus
vv       DEL PEAK 13(4Q22.1) MUTATED DEL PEAK 13(4Q22.1) WILD-TYPE
  CLUS_1                          63                           113
  CLUS_2                          48                            55
  CLUS_3                          40                           130
  CLUS_4                          15                            50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(4Q22.1) MUTATED       77     41     48
  DEL PEAK 13(4Q22.1) WILD-TYPE    144    111     97
D42V7, multiclass
        clus
vv       DEL PEAK 13(4Q22.1) MUTATED DEL PEAK 13(4Q22.1) WILD-TYPE
  CLUS_1                          77                           144
  CLUS_2                          41                           111
  CLUS_3                          48                            97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(4Q22.1) MUTATED       66     53     47
  DEL PEAK 13(4Q22.1) WILD-TYPE    124     89    139
D42V8, multiclass
        clus
vv       DEL PEAK 13(4Q22.1) MUTATED DEL PEAK 13(4Q22.1) WILD-TYPE
  CLUS_1                          66                           124
  CLUS_2                          53                            89
  CLUS_3                          47                           139
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(4Q22.1) MUTATED       27     40     37     43      9
  DEL PEAK 13(4Q22.1) WILD-TYPE     45    100     61     73     38
D42V9, multiclass
        clus
vv       DEL PEAK 13(4Q22.1) MUTATED DEL PEAK 13(4Q22.1) WILD-TYPE
  CLUS_1                          27                            45
  CLUS_2                          40                           100
  CLUS_3                          37                            61
  CLUS_4                          43                            73
  CLUS_5                           9                            38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(4Q22.1) MUTATED       47     85     24
  DEL PEAK 13(4Q22.1) WILD-TYPE     93    159     65
D42V10, multiclass
        clus
vv       DEL PEAK 13(4Q22.1) MUTATED DEL PEAK 13(4Q22.1) WILD-TYPE
  CLUS_1                          47                            93
  CLUS_2                          85                           159
  CLUS_3                          24                            65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(43) Variable = DEL PEAK 14(4Q35.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(4Q35.2) MUTATED       90     73     31     19
  DEL PEAK 14(4Q35.2) WILD-TYPE     65     62    158     24
D43V1, multiclass
        clus
vv       DEL PEAK 14(4Q35.2) MUTATED DEL PEAK 14(4Q35.2) WILD-TYPE
  CLUS_1                          90                            65
  CLUS_2                          73                            62
  CLUS_3                          31                           158
  CLUS_4                          19                            24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(4Q35.2) MUTATED       23     39     44     56     20     23
  DEL PEAK 14(4Q35.2) WILD-TYPE     61     40     52     36     58     52
                               vv
clus                            CLUS_7
  DEL PEAK 14(4Q35.2) MUTATED        8
  DEL PEAK 14(4Q35.2) WILD-TYPE     10
D43V2, multiclass
        clus
vv       DEL PEAK 14(4Q35.2) MUTATED DEL PEAK 14(4Q35.2) WILD-TYPE
  CLUS_1                          23                            61
  CLUS_2                          39                            40
  CLUS_3                          44                            52
  CLUS_4                          56                            36
  CLUS_5                          20                            58
  CLUS_6                          23                            52
  CLUS_7                           8                            10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(4Q35.2) MUTATED       22     25     15     29
  DEL PEAK 14(4Q35.2) WILD-TYPE     31     26     22     36
D43V3, multiclass
        clus
vv       DEL PEAK 14(4Q35.2) MUTATED DEL PEAK 14(4Q35.2) WILD-TYPE
  CLUS_1                          22                            31
  CLUS_2                          25                            26
  CLUS_3                          15                            22
  CLUS_4                          29                            36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(4Q35.2) MUTATED       34     41     16
  DEL PEAK 14(4Q35.2) WILD-TYPE     42     41     32
D43V4, multiclass
        clus
vv       DEL PEAK 14(4Q35.2) MUTATED DEL PEAK 14(4Q35.2) WILD-TYPE
  CLUS_1                          34                            42
  CLUS_2                          41                            41
  CLUS_3                          16                            32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(4Q35.2) MUTATED       66     90     52
  DEL PEAK 14(4Q35.2) WILD-TYPE     75    122    109
D43V5, multiclass
        clus
vv       DEL PEAK 14(4Q35.2) MUTATED DEL PEAK 14(4Q35.2) WILD-TYPE
  CLUS_1                          66                            75
  CLUS_2                          90                           122
  CLUS_3                          52                           109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(4Q35.2) MUTATED       79     55     59     15
  DEL PEAK 14(4Q35.2) WILD-TYPE     97     48    111     50
D43V6, multiclass
        clus
vv       DEL PEAK 14(4Q35.2) MUTATED DEL PEAK 14(4Q35.2) WILD-TYPE
  CLUS_1                          79                            97
  CLUS_2                          55                            48
  CLUS_3                          59                           111
  CLUS_4                          15                            50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(4Q35.2) MUTATED       96     52     63
  DEL PEAK 14(4Q35.2) WILD-TYPE    125    100     82
D43V7, multiclass
        clus
vv       DEL PEAK 14(4Q35.2) MUTATED DEL PEAK 14(4Q35.2) WILD-TYPE
  CLUS_1                          96                           125
  CLUS_2                          52                           100
  CLUS_3                          63                            82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(4Q35.2) MUTATED       84     68     59
  DEL PEAK 14(4Q35.2) WILD-TYPE    106     74    127
D43V8, multiclass
        clus
vv       DEL PEAK 14(4Q35.2) MUTATED DEL PEAK 14(4Q35.2) WILD-TYPE
  CLUS_1                          84                           106
  CLUS_2                          68                            74
  CLUS_3                          59                           127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(4Q35.2) MUTATED       34     52     46     51     13
  DEL PEAK 14(4Q35.2) WILD-TYPE     38     88     52     65     34
D43V9, multiclass
        clus
vv       DEL PEAK 14(4Q35.2) MUTATED DEL PEAK 14(4Q35.2) WILD-TYPE
  CLUS_1                          34                            38
  CLUS_2                          52                            88
  CLUS_3                          46                            52
  CLUS_4                          51                            65
  CLUS_5                          13                            34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(4Q35.2) MUTATED       66     97     33
  DEL PEAK 14(4Q35.2) WILD-TYPE     74    147     56
D43V10, multiclass
        clus
vv       DEL PEAK 14(4Q35.2) MUTATED DEL PEAK 14(4Q35.2) WILD-TYPE
  CLUS_1                          66                            74
  CLUS_2                          97                           147
  CLUS_3                          33                            56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(44) Variable = DEL PEAK 15(5Q12.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(5Q12.1) MUTATED       86     96     22     11
  DEL PEAK 15(5Q12.1) WILD-TYPE     69     39    167     32
D44V1, multiclass
        clus
vv       DEL PEAK 15(5Q12.1) MUTATED DEL PEAK 15(5Q12.1) WILD-TYPE
  CLUS_1                          86                            69
  CLUS_2                          96                            39
  CLUS_3                          22                           167
  CLUS_4                          11                            32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(5Q12.1) MUTATED       17     52     53     63     10     10
  DEL PEAK 15(5Q12.1) WILD-TYPE     67     27     43     29     68     65
                               vv
clus                            CLUS_7
  DEL PEAK 15(5Q12.1) MUTATED       10
  DEL PEAK 15(5Q12.1) WILD-TYPE      8
D44V2, multiclass
        clus
vv       DEL PEAK 15(5Q12.1) MUTATED DEL PEAK 15(5Q12.1) WILD-TYPE
  CLUS_1                          17                            67
  CLUS_2                          52                            27
  CLUS_3                          53                            43
  CLUS_4                          63                            29
  CLUS_5                          10                            68
  CLUS_6                          10                            65
  CLUS_7                          10                             8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(5Q12.1) MUTATED       19     29     13     32
  DEL PEAK 15(5Q12.1) WILD-TYPE     34     22     24     33
D44V3, multiclass
        clus
vv       DEL PEAK 15(5Q12.1) MUTATED DEL PEAK 15(5Q12.1) WILD-TYPE
  CLUS_1                          19                            34
  CLUS_2                          29                            22
  CLUS_3                          13                            24
  CLUS_4                          32                            33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(5Q12.1) MUTATED       32     42     19
  DEL PEAK 15(5Q12.1) WILD-TYPE     44     40     29
D44V4, multiclass
        clus
vv       DEL PEAK 15(5Q12.1) MUTATED DEL PEAK 15(5Q12.1) WILD-TYPE
  CLUS_1                          32                            44
  CLUS_2                          42                            40
  CLUS_3                          19                            29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(5Q12.1) MUTATED       66     92     55
  DEL PEAK 15(5Q12.1) WILD-TYPE     75    120    106
D44V5, multiclass
        clus
vv       DEL PEAK 15(5Q12.1) MUTATED DEL PEAK 15(5Q12.1) WILD-TYPE
  CLUS_1                          66                            75
  CLUS_2                          92                           120
  CLUS_3                          55                           106
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(5Q12.1) MUTATED       81     70     48     14
  DEL PEAK 15(5Q12.1) WILD-TYPE     95     33    122     51
D44V6, multiclass
        clus
vv       DEL PEAK 15(5Q12.1) MUTATED DEL PEAK 15(5Q12.1) WILD-TYPE
  CLUS_1                          81                            95
  CLUS_2                          70                            33
  CLUS_3                          48                           122
  CLUS_4                          14                            51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(5Q12.1) MUTATED       98     51     63
  DEL PEAK 15(5Q12.1) WILD-TYPE    123    101     82
D44V7, multiclass
        clus
vv       DEL PEAK 15(5Q12.1) MUTATED DEL PEAK 15(5Q12.1) WILD-TYPE
  CLUS_1                          98                           123
  CLUS_2                          51                           101
  CLUS_3                          63                            82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(5Q12.1) MUTATED       84     75     53
  DEL PEAK 15(5Q12.1) WILD-TYPE    106     67    133
D44V8, multiclass
        clus
vv       DEL PEAK 15(5Q12.1) MUTATED DEL PEAK 15(5Q12.1) WILD-TYPE
  CLUS_1                          84                           106
  CLUS_2                          75                            67
  CLUS_3                          53                           133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(5Q12.1) MUTATED       31     55     54     48      8
  DEL PEAK 15(5Q12.1) WILD-TYPE     41     85     44     68     39
D44V9, multiclass
        clus
vv       DEL PEAK 15(5Q12.1) MUTATED DEL PEAK 15(5Q12.1) WILD-TYPE
  CLUS_1                          31                            41
  CLUS_2                          55                            85
  CLUS_3                          54                            44
  CLUS_4                          48                            68
  CLUS_5                           8                            39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(5Q12.1) MUTATED       70     91     35
  DEL PEAK 15(5Q12.1) WILD-TYPE     70    153     54
D44V10, multiclass
        clus
vv       DEL PEAK 15(5Q12.1) MUTATED DEL PEAK 15(5Q12.1) WILD-TYPE
  CLUS_1                          70                            70
  CLUS_2                          91                           153
  CLUS_3                          35                            54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(45) Variable = DEL PEAK 16(5Q15) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(5Q15) MUTATED       88     98     28     12
  DEL PEAK 16(5Q15) WILD-TYPE     67     37    161     31
D45V1, multiclass
        clus
vv       DEL PEAK 16(5Q15) MUTATED DEL PEAK 16(5Q15) WILD-TYPE
  CLUS_1                        88                          67
  CLUS_2                        98                          37
  CLUS_3                        28                         161
  CLUS_4                        12                          31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 16(5Q15) MUTATED       19     54     52     66     12     12     11
  DEL PEAK 16(5Q15) WILD-TYPE     65     25     44     26     66     63      7
D45V2, multiclass
        clus
vv       DEL PEAK 16(5Q15) MUTATED DEL PEAK 16(5Q15) WILD-TYPE
  CLUS_1                        19                          65
  CLUS_2                        54                          25
  CLUS_3                        52                          44
  CLUS_4                        66                          26
  CLUS_5                        12                          66
  CLUS_6                        12                          63
  CLUS_7                        11                           7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(5Q15) MUTATED       19     29     14     30
  DEL PEAK 16(5Q15) WILD-TYPE     34     22     23     35
D45V3, multiclass
        clus
vv       DEL PEAK 16(5Q15) MUTATED DEL PEAK 16(5Q15) WILD-TYPE
  CLUS_1                        19                          34
  CLUS_2                        29                          22
  CLUS_3                        14                          23
  CLUS_4                        30                          35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(5Q15) MUTATED       32     41     19
  DEL PEAK 16(5Q15) WILD-TYPE     44     41     29
D45V4, multiclass
        clus
vv       DEL PEAK 16(5Q15) MUTATED DEL PEAK 16(5Q15) WILD-TYPE
  CLUS_1                        32                          44
  CLUS_2                        41                          41
  CLUS_3                        19                          29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(5Q15) MUTATED       68     96     59
  DEL PEAK 16(5Q15) WILD-TYPE     73    116    102
D45V5, multiclass
        clus
vv       DEL PEAK 16(5Q15) MUTATED DEL PEAK 16(5Q15) WILD-TYPE
  CLUS_1                        68                          73
  CLUS_2                        96                         116
  CLUS_3                        59                         102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(5Q15) MUTATED       82     71     54     16
  DEL PEAK 16(5Q15) WILD-TYPE     94     32    116     49
D45V6, multiclass
        clus
vv       DEL PEAK 16(5Q15) MUTATED DEL PEAK 16(5Q15) WILD-TYPE
  CLUS_1                        82                          94
  CLUS_2                        71                          32
  CLUS_3                        54                         116
  CLUS_4                        16                          49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(5Q15) MUTATED      104     55     64
  DEL PEAK 16(5Q15) WILD-TYPE    117     97     81
D45V7, multiclass
        clus
vv       DEL PEAK 16(5Q15) MUTATED DEL PEAK 16(5Q15) WILD-TYPE
  CLUS_1                       104                         117
  CLUS_2                        55                          97
  CLUS_3                        64                          81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(5Q15) MUTATED       86     80     57
  DEL PEAK 16(5Q15) WILD-TYPE    104     62    129
D45V8, multiclass
        clus
vv       DEL PEAK 16(5Q15) MUTATED DEL PEAK 16(5Q15) WILD-TYPE
  CLUS_1                        86                         104
  CLUS_2                        80                          62
  CLUS_3                        57                         129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(5Q15) MUTATED       31     58     57     51      8
  DEL PEAK 16(5Q15) WILD-TYPE     41     82     41     65     39
D45V9, multiclass
        clus
vv       DEL PEAK 16(5Q15) MUTATED DEL PEAK 16(5Q15) WILD-TYPE
  CLUS_1                        31                          41
  CLUS_2                        58                          82
  CLUS_3                        57                          41
  CLUS_4                        51                          65
  CLUS_5                         8                          39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(5Q15) MUTATED       68    100     37
  DEL PEAK 16(5Q15) WILD-TYPE     72    144     52
D45V10, multiclass
        clus
vv       DEL PEAK 16(5Q15) MUTATED DEL PEAK 16(5Q15) WILD-TYPE
  CLUS_1                        68                          72
  CLUS_2                       100                         144
  CLUS_3                        37                          52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(46) Variable = DEL PEAK 17(5Q35.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(5Q35.3) MUTATED       68     93     25     13
  DEL PEAK 17(5Q35.3) WILD-TYPE     87     42    164     30
D46V1, multiclass
        clus
vv       DEL PEAK 17(5Q35.3) MUTATED DEL PEAK 17(5Q35.3) WILD-TYPE
  CLUS_1                          68                            87
  CLUS_2                          93                            42
  CLUS_3                          25                           164
  CLUS_4                          13                            30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(5Q35.3) MUTATED       19     57     45     51     11      6
  DEL PEAK 17(5Q35.3) WILD-TYPE     65     22     51     41     67     69
                               vv
clus                            CLUS_7
  DEL PEAK 17(5Q35.3) MUTATED       10
  DEL PEAK 17(5Q35.3) WILD-TYPE      8
D46V2, multiclass
        clus
vv       DEL PEAK 17(5Q35.3) MUTATED DEL PEAK 17(5Q35.3) WILD-TYPE
  CLUS_1                          19                            65
  CLUS_2                          57                            22
  CLUS_3                          45                            51
  CLUS_4                          51                            41
  CLUS_5                          11                            67
  CLUS_6                           6                            69
  CLUS_7                          10                             8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(5Q35.3) MUTATED       18     26     12     27
  DEL PEAK 17(5Q35.3) WILD-TYPE     35     25     25     38
D46V3, multiclass
        clus
vv       DEL PEAK 17(5Q35.3) MUTATED DEL PEAK 17(5Q35.3) WILD-TYPE
  CLUS_1                          18                            35
  CLUS_2                          26                            25
  CLUS_3                          12                            25
  CLUS_4                          27                            38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(5Q35.3) MUTATED       28     34     21
  DEL PEAK 17(5Q35.3) WILD-TYPE     48     48     27
D46V4, multiclass
        clus
vv       DEL PEAK 17(5Q35.3) MUTATED DEL PEAK 17(5Q35.3) WILD-TYPE
  CLUS_1                          28                            48
  CLUS_2                          34                            48
  CLUS_3                          21                            27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(5Q35.3) MUTATED       62     87     49
  DEL PEAK 17(5Q35.3) WILD-TYPE     79    125    112
D46V5, multiclass
        clus
vv       DEL PEAK 17(5Q35.3) MUTATED DEL PEAK 17(5Q35.3) WILD-TYPE
  CLUS_1                          62                            79
  CLUS_2                          87                           125
  CLUS_3                          49                           112
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(5Q35.3) MUTATED       76     69     39     14
  DEL PEAK 17(5Q35.3) WILD-TYPE    100     34    131     51
D46V6, multiclass
        clus
vv       DEL PEAK 17(5Q35.3) MUTATED DEL PEAK 17(5Q35.3) WILD-TYPE
  CLUS_1                          76                           100
  CLUS_2                          69                            34
  CLUS_3                          39                           131
  CLUS_4                          14                            51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(5Q35.3) MUTATED       89     49     58
  DEL PEAK 17(5Q35.3) WILD-TYPE    132    103     87
D46V7, multiclass
        clus
vv       DEL PEAK 17(5Q35.3) MUTATED DEL PEAK 17(5Q35.3) WILD-TYPE
  CLUS_1                          89                           132
  CLUS_2                          49                           103
  CLUS_3                          58                            87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(5Q35.3) MUTATED       79     70     47
  DEL PEAK 17(5Q35.3) WILD-TYPE    111     72    139
D46V8, multiclass
        clus
vv       DEL PEAK 17(5Q35.3) MUTATED DEL PEAK 17(5Q35.3) WILD-TYPE
  CLUS_1                          79                           111
  CLUS_2                          70                            72
  CLUS_3                          47                           139
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(5Q35.3) MUTATED       28     51     52     41      7
  DEL PEAK 17(5Q35.3) WILD-TYPE     44     89     46     75     40
D46V9, multiclass
        clus
vv       DEL PEAK 17(5Q35.3) MUTATED DEL PEAK 17(5Q35.3) WILD-TYPE
  CLUS_1                          28                            44
  CLUS_2                          51                            89
  CLUS_3                          52                            46
  CLUS_4                          41                            75
  CLUS_5                           7                            40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(5Q35.3) MUTATED       63     86     30
  DEL PEAK 17(5Q35.3) WILD-TYPE     77    158     59
D46V10, multiclass
        clus
vv       DEL PEAK 17(5Q35.3) MUTATED DEL PEAK 17(5Q35.3) WILD-TYPE
  CLUS_1                          63                            77
  CLUS_2                          86                           158
  CLUS_3                          30                            59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(47) Variable = DEL PEAK 18(6P25.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(6P25.3) MUTATED       30     41     19      6
  DEL PEAK 18(6P25.3) WILD-TYPE    125     94    170     37
D47V1, multiclass
        clus
vv       DEL PEAK 18(6P25.3) MUTATED DEL PEAK 18(6P25.3) WILD-TYPE
  CLUS_1                          30                           125
  CLUS_2                          41                            94
  CLUS_3                          19                           170
  CLUS_4                           6                            37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(6P25.3) MUTATED       11     12     17     37     11      5
  DEL PEAK 18(6P25.3) WILD-TYPE     73     67     79     55     67     70
                               vv
clus                            CLUS_7
  DEL PEAK 18(6P25.3) MUTATED        3
  DEL PEAK 18(6P25.3) WILD-TYPE     15
D47V2, multiclass
        clus
vv       DEL PEAK 18(6P25.3) MUTATED DEL PEAK 18(6P25.3) WILD-TYPE
  CLUS_1                          11                            73
  CLUS_2                          12                            67
  CLUS_3                          17                            79
  CLUS_4                          37                            55
  CLUS_5                          11                            67
  CLUS_6                           5                            70
  CLUS_7                           3                            15
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(6P25.3) MUTATED       14     13      2     15
  DEL PEAK 18(6P25.3) WILD-TYPE     39     38     35     50
D47V3, multiclass
        clus
vv       DEL PEAK 18(6P25.3) MUTATED DEL PEAK 18(6P25.3) WILD-TYPE
  CLUS_1                          14                            39
  CLUS_2                          13                            38
  CLUS_3                           2                            35
  CLUS_4                          15                            50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(6P25.3) MUTATED       15     25      4
  DEL PEAK 18(6P25.3) WILD-TYPE     61     57     44
D47V4, multiclass
        clus
vv       DEL PEAK 18(6P25.3) MUTATED DEL PEAK 18(6P25.3) WILD-TYPE
  CLUS_1                          15                            61
  CLUS_2                          25                            57
  CLUS_3                           4                            44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(6P25.3) MUTATED       31     47     16
  DEL PEAK 18(6P25.3) WILD-TYPE    110    165    145
D47V5, multiclass
        clus
vv       DEL PEAK 18(6P25.3) MUTATED DEL PEAK 18(6P25.3) WILD-TYPE
  CLUS_1                          31                           110
  CLUS_2                          47                           165
  CLUS_3                          16                           145
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(6P25.3) MUTATED       33     26     26      9
  DEL PEAK 18(6P25.3) WILD-TYPE    143     77    144     56
D47V6, multiclass
        clus
vv       DEL PEAK 18(6P25.3) MUTATED DEL PEAK 18(6P25.3) WILD-TYPE
  CLUS_1                          33                           143
  CLUS_2                          26                            77
  CLUS_3                          26                           144
  CLUS_4                           9                            56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(6P25.3) MUTATED       47     21     28
  DEL PEAK 18(6P25.3) WILD-TYPE    174    131    117
D47V7, multiclass
        clus
vv       DEL PEAK 18(6P25.3) MUTATED DEL PEAK 18(6P25.3) WILD-TYPE
  CLUS_1                          47                           174
  CLUS_2                          21                           131
  CLUS_3                          28                           117
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(6P25.3) MUTATED       37     28     31
  DEL PEAK 18(6P25.3) WILD-TYPE    153    114    155
D47V8, multiclass
        clus
vv       DEL PEAK 18(6P25.3) MUTATED DEL PEAK 18(6P25.3) WILD-TYPE
  CLUS_1                          37                           153
  CLUS_2                          28                           114
  CLUS_3                          31                           155
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(6P25.3) MUTATED       18     21     22     17      7
  DEL PEAK 18(6P25.3) WILD-TYPE     54    119     76     99     40
D47V9, multiclass
        clus
vv       DEL PEAK 18(6P25.3) MUTATED DEL PEAK 18(6P25.3) WILD-TYPE
  CLUS_1                          18                            54
  CLUS_2                          21                           119
  CLUS_3                          22                            76
  CLUS_4                          17                            99
  CLUS_5                           7                            40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(6P25.3) MUTATED       25     47     13
  DEL PEAK 18(6P25.3) WILD-TYPE    115    197     76
D47V10, multiclass
        clus
vv       DEL PEAK 18(6P25.3) MUTATED DEL PEAK 18(6P25.3) WILD-TYPE
  CLUS_1                          25                           115
  CLUS_2                          47                           197
  CLUS_3                          13                            76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(48) Variable = DEL PEAK 19(7Q31.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(7Q31.1) MUTATED       34     20     15      8
  DEL PEAK 19(7Q31.1) WILD-TYPE    121    115    174     35
D48V1, multiclass
        clus
vv       DEL PEAK 19(7Q31.1) MUTATED DEL PEAK 19(7Q31.1) WILD-TYPE
  CLUS_1                          34                           121
  CLUS_2                          20                           115
  CLUS_3                          15                           174
  CLUS_4                           8                            35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(7Q31.1) MUTATED       11     16     18     15     10      6
  DEL PEAK 19(7Q31.1) WILD-TYPE     73     63     78     77     68     69
                               vv
clus                            CLUS_7
  DEL PEAK 19(7Q31.1) MUTATED        1
  DEL PEAK 19(7Q31.1) WILD-TYPE     17
D48V2, multiclass
        clus
vv       DEL PEAK 19(7Q31.1) MUTATED DEL PEAK 19(7Q31.1) WILD-TYPE
  CLUS_1                          11                            73
  CLUS_2                          16                            63
  CLUS_3                          18                            78
  CLUS_4                          15                            77
  CLUS_5                          10                            68
  CLUS_6                           6                            69
  CLUS_7                           1                            17
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(7Q31.1) MUTATED       10     11      6      8
  DEL PEAK 19(7Q31.1) WILD-TYPE     43     40     31     57
D48V3, multiclass
        clus
vv       DEL PEAK 19(7Q31.1) MUTATED DEL PEAK 19(7Q31.1) WILD-TYPE
  CLUS_1                          10                            43
  CLUS_2                          11                            40
  CLUS_3                           6                            31
  CLUS_4                           8                            57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(7Q31.1) MUTATED       13     11     11
  DEL PEAK 19(7Q31.1) WILD-TYPE     63     71     37
D48V4, multiclass
        clus
vv       DEL PEAK 19(7Q31.1) MUTATED DEL PEAK 19(7Q31.1) WILD-TYPE
  CLUS_1                          13                            63
  CLUS_2                          11                            71
  CLUS_3                          11                            37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(7Q31.1) MUTATED       20     28     29
  DEL PEAK 19(7Q31.1) WILD-TYPE    121    184    132
D48V5, multiclass
        clus
vv       DEL PEAK 19(7Q31.1) MUTATED DEL PEAK 19(7Q31.1) WILD-TYPE
  CLUS_1                          20                           121
  CLUS_2                          28                           184
  CLUS_3                          29                           132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(7Q31.1) MUTATED       25     13     31      8
  DEL PEAK 19(7Q31.1) WILD-TYPE    151     90    139     57
D48V6, multiclass
        clus
vv       DEL PEAK 19(7Q31.1) MUTATED DEL PEAK 19(7Q31.1) WILD-TYPE
  CLUS_1                          25                           151
  CLUS_2                          13                            90
  CLUS_3                          31                           139
  CLUS_4                           8                            57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(7Q31.1) MUTATED       33     25     19
  DEL PEAK 19(7Q31.1) WILD-TYPE    188    127    126
D48V7, multiclass
        clus
vv       DEL PEAK 19(7Q31.1) MUTATED DEL PEAK 19(7Q31.1) WILD-TYPE
  CLUS_1                          33                           188
  CLUS_2                          25                           127
  CLUS_3                          19                           126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(7Q31.1) MUTATED       25     28     24
  DEL PEAK 19(7Q31.1) WILD-TYPE    165    114    162
D48V8, multiclass
        clus
vv       DEL PEAK 19(7Q31.1) MUTATED DEL PEAK 19(7Q31.1) WILD-TYPE
  CLUS_1                          25                           165
  CLUS_2                          28                           114
  CLUS_3                          24                           162
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(7Q31.1) MUTATED       11     18     13     22      4
  DEL PEAK 19(7Q31.1) WILD-TYPE     61    122     85     94     43
D48V9, multiclass
        clus
vv       DEL PEAK 19(7Q31.1) MUTATED DEL PEAK 19(7Q31.1) WILD-TYPE
  CLUS_1                          11                            61
  CLUS_2                          18                           122
  CLUS_3                          13                            85
  CLUS_4                          22                            94
  CLUS_5                           4                            43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(7Q31.1) MUTATED       23     34     11
  DEL PEAK 19(7Q31.1) WILD-TYPE    117    210     78
D48V10, multiclass
        clus
vv       DEL PEAK 19(7Q31.1) MUTATED DEL PEAK 19(7Q31.1) WILD-TYPE
  CLUS_1                          23                           117
  CLUS_2                          34                           210
  CLUS_3                          11                            78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(49) Variable = DEL PEAK 20(7Q36.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(7Q36.1) MUTATED       50     39     28     15
  DEL PEAK 20(7Q36.1) WILD-TYPE    105     96    161     28
D49V1, multiclass
        clus
vv       DEL PEAK 20(7Q36.1) MUTATED DEL PEAK 20(7Q36.1) WILD-TYPE
  CLUS_1                          50                           105
  CLUS_2                          39                            96
  CLUS_3                          28                           161
  CLUS_4                          15                            28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(7Q36.1) MUTATED       22     22     22     28     20     12
  DEL PEAK 20(7Q36.1) WILD-TYPE     62     57     74     64     58     63
                               vv
clus                            CLUS_7
  DEL PEAK 20(7Q36.1) MUTATED        6
  DEL PEAK 20(7Q36.1) WILD-TYPE     12
D49V2, multiclass
        clus
vv       DEL PEAK 20(7Q36.1) MUTATED DEL PEAK 20(7Q36.1) WILD-TYPE
  CLUS_1                          22                            62
  CLUS_2                          22                            57
  CLUS_3                          22                            74
  CLUS_4                          28                            64
  CLUS_5                          20                            58
  CLUS_6                          12                            63
  CLUS_7                           6                            12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(7Q36.1) MUTATED       16     21      8     12
  DEL PEAK 20(7Q36.1) WILD-TYPE     37     30     29     53
D49V3, multiclass
        clus
vv       DEL PEAK 20(7Q36.1) MUTATED DEL PEAK 20(7Q36.1) WILD-TYPE
  CLUS_1                          16                            37
  CLUS_2                          21                            30
  CLUS_3                           8                            29
  CLUS_4                          12                            53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(7Q36.1) MUTATED       21     25     11
  DEL PEAK 20(7Q36.1) WILD-TYPE     55     57     37
D49V4, multiclass
        clus
vv       DEL PEAK 20(7Q36.1) MUTATED DEL PEAK 20(7Q36.1) WILD-TYPE
  CLUS_1                          21                            55
  CLUS_2                          25                            57
  CLUS_3                          11                            37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(7Q36.1) MUTATED       38     53     40
  DEL PEAK 20(7Q36.1) WILD-TYPE    103    159    121
D49V5, multiclass
        clus
vv       DEL PEAK 20(7Q36.1) MUTATED DEL PEAK 20(7Q36.1) WILD-TYPE
  CLUS_1                          38                           103
  CLUS_2                          53                           159
  CLUS_3                          40                           121
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(7Q36.1) MUTATED       43     28     46     14
  DEL PEAK 20(7Q36.1) WILD-TYPE    133     75    124     51
D49V6, multiclass
        clus
vv       DEL PEAK 20(7Q36.1) MUTATED DEL PEAK 20(7Q36.1) WILD-TYPE
  CLUS_1                          43                           133
  CLUS_2                          28                            75
  CLUS_3                          46                           124
  CLUS_4                          14                            51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(7Q36.1) MUTATED       55     41     34
  DEL PEAK 20(7Q36.1) WILD-TYPE    166    111    111
D49V7, multiclass
        clus
vv       DEL PEAK 20(7Q36.1) MUTATED DEL PEAK 20(7Q36.1) WILD-TYPE
  CLUS_1                          55                           166
  CLUS_2                          41                           111
  CLUS_3                          34                           111
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(7Q36.1) MUTATED       46     42     42
  DEL PEAK 20(7Q36.1) WILD-TYPE    144    100    144
D49V8, multiclass
        clus
vv       DEL PEAK 20(7Q36.1) MUTATED DEL PEAK 20(7Q36.1) WILD-TYPE
  CLUS_1                          46                           144
  CLUS_2                          42                           100
  CLUS_3                          42                           144
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(7Q36.1) MUTATED       18     35     24     28     10
  DEL PEAK 20(7Q36.1) WILD-TYPE     54    105     74     88     37
D49V9, multiclass
        clus
vv       DEL PEAK 20(7Q36.1) MUTATED DEL PEAK 20(7Q36.1) WILD-TYPE
  CLUS_1                          18                            54
  CLUS_2                          35                           105
  CLUS_3                          24                            74
  CLUS_4                          28                            88
  CLUS_5                          10                            37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(7Q36.1) MUTATED       35     59     21
  DEL PEAK 20(7Q36.1) WILD-TYPE    105    185     68
D49V10, multiclass
        clus
vv       DEL PEAK 20(7Q36.1) MUTATED DEL PEAK 20(7Q36.1) WILD-TYPE
  CLUS_1                          35                           105
  CLUS_2                          59                           185
  CLUS_3                          21                            68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(50) Variable = DEL PEAK 21(8P23.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(8P23.2) MUTATED      125     78     74     27
  DEL PEAK 21(8P23.2) WILD-TYPE     30     57    115     16
D50V1, multiclass
        clus
vv       DEL PEAK 21(8P23.2) MUTATED DEL PEAK 21(8P23.2) WILD-TYPE
  CLUS_1                         125                            30
  CLUS_2                          78                            57
  CLUS_3                          74                           115
  CLUS_4                          27                            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(8P23.2) MUTATED       50     40     71     63     16     51
  DEL PEAK 21(8P23.2) WILD-TYPE     34     39     25     29     62     24
                               vv
clus                            CLUS_7
  DEL PEAK 21(8P23.2) MUTATED       13
  DEL PEAK 21(8P23.2) WILD-TYPE      5
D50V2, multiclass
        clus
vv       DEL PEAK 21(8P23.2) MUTATED DEL PEAK 21(8P23.2) WILD-TYPE
  CLUS_1                          50                            34
  CLUS_2                          40                            39
  CLUS_3                          71                            25
  CLUS_4                          63                            29
  CLUS_5                          16                            62
  CLUS_6                          51                            24
  CLUS_7                          13                             5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(8P23.2) MUTATED       37     27     20     40
  DEL PEAK 21(8P23.2) WILD-TYPE     16     24     17     25
D50V3, multiclass
        clus
vv       DEL PEAK 21(8P23.2) MUTATED DEL PEAK 21(8P23.2) WILD-TYPE
  CLUS_1                          37                            16
  CLUS_2                          27                            24
  CLUS_3                          20                            17
  CLUS_4                          40                            25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(8P23.2) MUTATED       50     49     25
  DEL PEAK 21(8P23.2) WILD-TYPE     26     33     23
D50V4, multiclass
        clus
vv       DEL PEAK 21(8P23.2) MUTATED DEL PEAK 21(8P23.2) WILD-TYPE
  CLUS_1                          50                            26
  CLUS_2                          49                            33
  CLUS_3                          25                            23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(8P23.2) MUTATED       94    103    102
  DEL PEAK 21(8P23.2) WILD-TYPE     47    109     59
D50V5, multiclass
        clus
vv       DEL PEAK 21(8P23.2) MUTATED DEL PEAK 21(8P23.2) WILD-TYPE
  CLUS_1                          94                            47
  CLUS_2                         103                           109
  CLUS_3                         102                            59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(8P23.2) MUTATED      114     62    112     11
  DEL PEAK 21(8P23.2) WILD-TYPE     62     41     58     54
D50V6, multiclass
        clus
vv       DEL PEAK 21(8P23.2) MUTATED DEL PEAK 21(8P23.2) WILD-TYPE
  CLUS_1                         114                            62
  CLUS_2                          62                            41
  CLUS_3                         112                            58
  CLUS_4                          11                            54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(8P23.2) MUTATED      113     97     92
  DEL PEAK 21(8P23.2) WILD-TYPE    108     55     53
D50V7, multiclass
        clus
vv       DEL PEAK 21(8P23.2) MUTATED DEL PEAK 21(8P23.2) WILD-TYPE
  CLUS_1                         113                           108
  CLUS_2                          97                            55
  CLUS_3                          92                            53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(8P23.2) MUTATED      124     87     91
  DEL PEAK 21(8P23.2) WILD-TYPE     66     55     95
D50V8, multiclass
        clus
vv       DEL PEAK 21(8P23.2) MUTATED DEL PEAK 21(8P23.2) WILD-TYPE
  CLUS_1                         124                            66
  CLUS_2                          87                            55
  CLUS_3                          91                            95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(8P23.2) MUTATED       47     95     44     75     14
  DEL PEAK 21(8P23.2) WILD-TYPE     25     45     54     41     33
D50V9, multiclass
        clus
vv       DEL PEAK 21(8P23.2) MUTATED DEL PEAK 21(8P23.2) WILD-TYPE
  CLUS_1                          47                            25
  CLUS_2                          95                            45
  CLUS_3                          44                            54
  CLUS_4                          75                            41
  CLUS_5                          14                            33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(8P23.2) MUTATED       96    117     62
  DEL PEAK 21(8P23.2) WILD-TYPE     44    127     27
D50V10, multiclass
        clus
vv       DEL PEAK 21(8P23.2) MUTATED DEL PEAK 21(8P23.2) WILD-TYPE
  CLUS_1                          96                            44
  CLUS_2                         117                           127
  CLUS_3                          62                            27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(51) Variable = DEL PEAK 22(9P23) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(9P23) MUTATED      103     94     41      1
  DEL PEAK 22(9P23) WILD-TYPE     52     41    148     42
D51V1, multiclass
        clus
vv       DEL PEAK 22(9P23) MUTATED DEL PEAK 22(9P23) WILD-TYPE
  CLUS_1                       103                          52
  CLUS_2                        94                          41
  CLUS_3                        41                         148
  CLUS_4                         1                          42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 22(9P23) MUTATED       27     57     52     65      9     18     11
  DEL PEAK 22(9P23) WILD-TYPE     57     22     44     27     69     57      7
D51V2, multiclass
        clus
vv       DEL PEAK 22(9P23) MUTATED DEL PEAK 22(9P23) WILD-TYPE
  CLUS_1                        27                          57
  CLUS_2                        57                          22
  CLUS_3                        52                          44
  CLUS_4                        65                          27
  CLUS_5                         9                          69
  CLUS_6                        18                          57
  CLUS_7                        11                           7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(9P23) MUTATED       22     28     14     34
  DEL PEAK 22(9P23) WILD-TYPE     31     23     23     31
D51V3, multiclass
        clus
vv       DEL PEAK 22(9P23) MUTATED DEL PEAK 22(9P23) WILD-TYPE
  CLUS_1                        22                          31
  CLUS_2                        28                          23
  CLUS_3                        14                          23
  CLUS_4                        34                          31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(9P23) MUTATED       29     44     25
  DEL PEAK 22(9P23) WILD-TYPE     47     38     23
D51V4, multiclass
        clus
vv       DEL PEAK 22(9P23) MUTATED DEL PEAK 22(9P23) WILD-TYPE
  CLUS_1                        29                          47
  CLUS_2                        44                          38
  CLUS_3                        25                          23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(9P23) MUTATED       64     99     74
  DEL PEAK 22(9P23) WILD-TYPE     77    113     87
D51V5, multiclass
        clus
vv       DEL PEAK 22(9P23) MUTATED DEL PEAK 22(9P23) WILD-TYPE
  CLUS_1                        64                          77
  CLUS_2                        99                         113
  CLUS_3                        74                          87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(9P23) MUTATED       77     68     80     12
  DEL PEAK 22(9P23) WILD-TYPE     99     35     90     53
D51V6, multiclass
        clus
vv       DEL PEAK 22(9P23) MUTATED DEL PEAK 22(9P23) WILD-TYPE
  CLUS_1                        77                          99
  CLUS_2                        68                          35
  CLUS_3                        80                          90
  CLUS_4                        12                          53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(9P23) MUTATED      108     64     64
  DEL PEAK 22(9P23) WILD-TYPE    113     88     81
D51V7, multiclass
        clus
vv       DEL PEAK 22(9P23) MUTATED DEL PEAK 22(9P23) WILD-TYPE
  CLUS_1                       108                         113
  CLUS_2                        64                          88
  CLUS_3                        64                          81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(9P23) MUTATED       85     85     66
  DEL PEAK 22(9P23) WILD-TYPE    105     57    120
D51V8, multiclass
        clus
vv       DEL PEAK 22(9P23) MUTATED DEL PEAK 22(9P23) WILD-TYPE
  CLUS_1                        85                         105
  CLUS_2                        85                          57
  CLUS_3                        66                         120
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(9P23) MUTATED       44     56     58     51      6
  DEL PEAK 22(9P23) WILD-TYPE     28     84     40     65     41
D51V9, multiclass
        clus
vv       DEL PEAK 22(9P23) MUTATED DEL PEAK 22(9P23) WILD-TYPE
  CLUS_1                        44                          28
  CLUS_2                        56                          84
  CLUS_3                        58                          40
  CLUS_4                        51                          65
  CLUS_5                         6                          41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(9P23) MUTATED       71    104     40
  DEL PEAK 22(9P23) WILD-TYPE     69    140     49
D51V10, multiclass
        clus
vv       DEL PEAK 22(9P23) MUTATED DEL PEAK 22(9P23) WILD-TYPE
  CLUS_1                        71                          69
  CLUS_2                       104                         140
  CLUS_3                        40                          49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(52) Variable = DEL PEAK 23(9P21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(9P21.3) MUTATED      110    109     69     14
  DEL PEAK 23(9P21.3) WILD-TYPE     45     26    120     29
D52V1, multiclass
        clus
vv       DEL PEAK 23(9P21.3) MUTATED DEL PEAK 23(9P21.3) WILD-TYPE
  CLUS_1                         110                            45
  CLUS_2                         109                            26
  CLUS_3                          69                           120
  CLUS_4                          14                            29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(9P21.3) MUTATED       42     66     67     69     11     35
  DEL PEAK 23(9P21.3) WILD-TYPE     42     13     29     23     67     40
                               vv
clus                            CLUS_7
  DEL PEAK 23(9P21.3) MUTATED       12
  DEL PEAK 23(9P21.3) WILD-TYPE      6
D52V2, multiclass
        clus
vv       DEL PEAK 23(9P21.3) MUTATED DEL PEAK 23(9P21.3) WILD-TYPE
  CLUS_1                          42                            42
  CLUS_2                          66                            13
  CLUS_3                          67                            29
  CLUS_4                          69                            23
  CLUS_5                          11                            67
  CLUS_6                          35                            40
  CLUS_7                          12                             6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(9P21.3) MUTATED       32     31     22     45
  DEL PEAK 23(9P21.3) WILD-TYPE     21     20     15     20
D52V3, multiclass
        clus
vv       DEL PEAK 23(9P21.3) MUTATED DEL PEAK 23(9P21.3) WILD-TYPE
  CLUS_1                          32                            21
  CLUS_2                          31                            20
  CLUS_3                          22                            15
  CLUS_4                          45                            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(9P21.3) MUTATED       44     52     34
  DEL PEAK 23(9P21.3) WILD-TYPE     32     30     14
D52V4, multiclass
        clus
vv       DEL PEAK 23(9P21.3) MUTATED DEL PEAK 23(9P21.3) WILD-TYPE
  CLUS_1                          44                            32
  CLUS_2                          52                            30
  CLUS_3                          34                            14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(9P21.3) MUTATED       87    115     98
  DEL PEAK 23(9P21.3) WILD-TYPE     54     97     63
D52V5, multiclass
        clus
vv       DEL PEAK 23(9P21.3) MUTATED DEL PEAK 23(9P21.3) WILD-TYPE
  CLUS_1                          87                            54
  CLUS_2                         115                            97
  CLUS_3                          98                            63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(9P21.3) MUTATED      103     75    107     15
  DEL PEAK 23(9P21.3) WILD-TYPE     73     28     63     50
D52V6, multiclass
        clus
vv       DEL PEAK 23(9P21.3) MUTATED DEL PEAK 23(9P21.3) WILD-TYPE
  CLUS_1                         103                            73
  CLUS_2                          75                            28
  CLUS_3                         107                            63
  CLUS_4                          15                            50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(9P21.3) MUTATED      134     82     84
  DEL PEAK 23(9P21.3) WILD-TYPE     87     70     61
D52V7, multiclass
        clus
vv       DEL PEAK 23(9P21.3) MUTATED DEL PEAK 23(9P21.3) WILD-TYPE
  CLUS_1                         134                            87
  CLUS_2                          82                            70
  CLUS_3                          84                            61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(9P21.3) MUTATED      113    108     79
  DEL PEAK 23(9P21.3) WILD-TYPE     77     34    107
D52V8, multiclass
        clus
vv       DEL PEAK 23(9P21.3) MUTATED DEL PEAK 23(9P21.3) WILD-TYPE
  CLUS_1                         113                            77
  CLUS_2                         108                            34
  CLUS_3                          79                           107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(9P21.3) MUTATED       54     77     66     63     12
  DEL PEAK 23(9P21.3) WILD-TYPE     18     63     32     53     35
D52V9, multiclass
        clus
vv       DEL PEAK 23(9P21.3) MUTATED DEL PEAK 23(9P21.3) WILD-TYPE
  CLUS_1                          54                            18
  CLUS_2                          77                            63
  CLUS_3                          66                            32
  CLUS_4                          63                            53
  CLUS_5                          12                            35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(9P21.3) MUTATED       85    130     57
  DEL PEAK 23(9P21.3) WILD-TYPE     55    114     32
D52V10, multiclass
        clus
vv       DEL PEAK 23(9P21.3) MUTATED DEL PEAK 23(9P21.3) WILD-TYPE
  CLUS_1                          85                            55
  CLUS_2                         130                           114
  CLUS_3                          57                            32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(53) Variable = DEL PEAK 24(9Q21.11) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(9Q21.11) MUTATED       51     35     21      1
  DEL PEAK 24(9Q21.11) WILD-TYPE    104    100    168     42
D53V1, multiclass
        clus
vv       DEL PEAK 24(9Q21.11) MUTATED DEL PEAK 24(9Q21.11) WILD-TYPE
  CLUS_1                           51                            104
  CLUS_2                           35                            100
  CLUS_3                           21                            168
  CLUS_4                            1                             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 24(9Q21.11) MUTATED       12     30     20     28      4      5
  DEL PEAK 24(9Q21.11) WILD-TYPE     72     49     76     64     74     70
                                vv
clus                             CLUS_7
  DEL PEAK 24(9Q21.11) MUTATED        9
  DEL PEAK 24(9Q21.11) WILD-TYPE      9
D53V2, multiclass
        clus
vv       DEL PEAK 24(9Q21.11) MUTATED DEL PEAK 24(9Q21.11) WILD-TYPE
  CLUS_1                           12                             72
  CLUS_2                           30                             49
  CLUS_3                           20                             76
  CLUS_4                           28                             64
  CLUS_5                            4                             74
  CLUS_6                            5                             70
  CLUS_7                            9                              9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(9Q21.11) MUTATED        9     10      6     12
  DEL PEAK 24(9Q21.11) WILD-TYPE     44     41     31     53
D53V3, multiclass
        clus
vv       DEL PEAK 24(9Q21.11) MUTATED DEL PEAK 24(9Q21.11) WILD-TYPE
  CLUS_1                            9                             44
  CLUS_2                           10                             41
  CLUS_3                            6                             31
  CLUS_4                           12                             53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(9Q21.11) MUTATED       10     15     12
  DEL PEAK 24(9Q21.11) WILD-TYPE     66     67     36
D53V4, multiclass
        clus
vv       DEL PEAK 24(9Q21.11) MUTATED DEL PEAK 24(9Q21.11) WILD-TYPE
  CLUS_1                           10                             66
  CLUS_2                           15                             67
  CLUS_3                           12                             36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(9Q21.11) MUTATED       32     41     34
  DEL PEAK 24(9Q21.11) WILD-TYPE    109    171    127
D53V5, multiclass
        clus
vv       DEL PEAK 24(9Q21.11) MUTATED DEL PEAK 24(9Q21.11) WILD-TYPE
  CLUS_1                           32                            109
  CLUS_2                           41                            171
  CLUS_3                           34                            127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(9Q21.11) MUTATED       33     28     40      6
  DEL PEAK 24(9Q21.11) WILD-TYPE    143     75    130     59
D53V6, multiclass
        clus
vv       DEL PEAK 24(9Q21.11) MUTATED DEL PEAK 24(9Q21.11) WILD-TYPE
  CLUS_1                           33                            143
  CLUS_2                           28                             75
  CLUS_3                           40                            130
  CLUS_4                            6                             59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(9Q21.11) MUTATED       48     31     27
  DEL PEAK 24(9Q21.11) WILD-TYPE    173    121    118
D53V7, multiclass
        clus
vv       DEL PEAK 24(9Q21.11) MUTATED DEL PEAK 24(9Q21.11) WILD-TYPE
  CLUS_1                           48                            173
  CLUS_2                           31                            121
  CLUS_3                           27                            118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(9Q21.11) MUTATED       33     45     28
  DEL PEAK 24(9Q21.11) WILD-TYPE    157     97    158
D53V8, multiclass
        clus
vv       DEL PEAK 24(9Q21.11) MUTATED DEL PEAK 24(9Q21.11) WILD-TYPE
  CLUS_1                           33                            157
  CLUS_2                           45                             97
  CLUS_3                           28                            158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(9Q21.11) MUTATED       21     27     27     22      2
  DEL PEAK 24(9Q21.11) WILD-TYPE     51    113     71     94     45
D53V9, multiclass
        clus
vv       DEL PEAK 24(9Q21.11) MUTATED DEL PEAK 24(9Q21.11) WILD-TYPE
  CLUS_1                           21                             51
  CLUS_2                           27                            113
  CLUS_3                           27                             71
  CLUS_4                           22                             94
  CLUS_5                            2                             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(9Q21.11) MUTATED       29     50     20
  DEL PEAK 24(9Q21.11) WILD-TYPE    111    194     69
D53V10, multiclass
        clus
vv       DEL PEAK 24(9Q21.11) MUTATED DEL PEAK 24(9Q21.11) WILD-TYPE
  CLUS_1                           29                            111
  CLUS_2                           50                            194
  CLUS_3                           20                             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(54) Variable = DEL PEAK 25(9Q34.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(9Q34.3) MUTATED       38     22     18      1
  DEL PEAK 25(9Q34.3) WILD-TYPE    117    113    171     42
D54V1, multiclass
        clus
vv       DEL PEAK 25(9Q34.3) MUTATED DEL PEAK 25(9Q34.3) WILD-TYPE
  CLUS_1                          38                           117
  CLUS_2                          22                           113
  CLUS_3                          18                           171
  CLUS_4                           1                            42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 25(9Q34.3) MUTATED        5     23     18     15      7      7
  DEL PEAK 25(9Q34.3) WILD-TYPE     79     56     78     77     71     68
                               vv
clus                            CLUS_7
  DEL PEAK 25(9Q34.3) MUTATED        4
  DEL PEAK 25(9Q34.3) WILD-TYPE     14
D54V2, multiclass
        clus
vv       DEL PEAK 25(9Q34.3) MUTATED DEL PEAK 25(9Q34.3) WILD-TYPE
  CLUS_1                           5                            79
  CLUS_2                          23                            56
  CLUS_3                          18                            78
  CLUS_4                          15                            77
  CLUS_5                           7                            71
  CLUS_6                           7                            68
  CLUS_7                           4                            14
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(9Q34.3) MUTATED        8      9      3     11
  DEL PEAK 25(9Q34.3) WILD-TYPE     45     42     34     54
D54V3, multiclass
        clus
vv       DEL PEAK 25(9Q34.3) MUTATED DEL PEAK 25(9Q34.3) WILD-TYPE
  CLUS_1                           8                            45
  CLUS_2                           9                            42
  CLUS_3                           3                            34
  CLUS_4                          11                            54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(9Q34.3) MUTATED        8     15      8
  DEL PEAK 25(9Q34.3) WILD-TYPE     68     67     40
D54V4, multiclass
        clus
vv       DEL PEAK 25(9Q34.3) MUTATED DEL PEAK 25(9Q34.3) WILD-TYPE
  CLUS_1                           8                            68
  CLUS_2                          15                            67
  CLUS_3                           8                            40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(9Q34.3) MUTATED       23     29     25
  DEL PEAK 25(9Q34.3) WILD-TYPE    118    183    136
D54V5, multiclass
        clus
vv       DEL PEAK 25(9Q34.3) MUTATED DEL PEAK 25(9Q34.3) WILD-TYPE
  CLUS_1                          23                           118
  CLUS_2                          29                           183
  CLUS_3                          25                           136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(9Q34.3) MUTATED       29     19     22      7
  DEL PEAK 25(9Q34.3) WILD-TYPE    147     84    148     58
D54V6, multiclass
        clus
vv       DEL PEAK 25(9Q34.3) MUTATED DEL PEAK 25(9Q34.3) WILD-TYPE
  CLUS_1                          29                           147
  CLUS_2                          19                            84
  CLUS_3                          22                           148
  CLUS_4                           7                            58
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(9Q34.3) MUTATED       35     19     25
  DEL PEAK 25(9Q34.3) WILD-TYPE    186    133    120
D54V7, multiclass
        clus
vv       DEL PEAK 25(9Q34.3) MUTATED DEL PEAK 25(9Q34.3) WILD-TYPE
  CLUS_1                          35                           186
  CLUS_2                          19                           133
  CLUS_3                          25                           120
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(9Q34.3) MUTATED       28     32     19
  DEL PEAK 25(9Q34.3) WILD-TYPE    162    110    167
D54V8, multiclass
        clus
vv       DEL PEAK 25(9Q34.3) MUTATED DEL PEAK 25(9Q34.3) WILD-TYPE
  CLUS_1                          28                           162
  CLUS_2                          32                           110
  CLUS_3                          19                           167
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(9Q34.3) MUTATED       18     17     20     19      1
  DEL PEAK 25(9Q34.3) WILD-TYPE     54    123     78     97     46
D54V9, multiclass
        clus
vv       DEL PEAK 25(9Q34.3) MUTATED DEL PEAK 25(9Q34.3) WILD-TYPE
  CLUS_1                          18                            54
  CLUS_2                          17                           123
  CLUS_3                          20                            78
  CLUS_4                          19                            97
  CLUS_5                           1                            46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(9Q34.3) MUTATED       22     38     15
  DEL PEAK 25(9Q34.3) WILD-TYPE    118    206     74
D54V10, multiclass
        clus
vv       DEL PEAK 25(9Q34.3) MUTATED DEL PEAK 25(9Q34.3) WILD-TYPE
  CLUS_1                          22                           118
  CLUS_2                          38                           206
  CLUS_3                          15                            74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(55) Variable = DEL PEAK 26(10P15.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(10P15.3) MUTATED       77     48     29     16
  DEL PEAK 26(10P15.3) WILD-TYPE     78     87    160     27
D55V1, multiclass
        clus
vv       DEL PEAK 26(10P15.3) MUTATED DEL PEAK 26(10P15.3) WILD-TYPE
  CLUS_1                           77                             78
  CLUS_2                           48                             87
  CLUS_3                           29                            160
  CLUS_4                           16                             27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(10P15.3) MUTATED       18     23     43     43     10     22
  DEL PEAK 26(10P15.3) WILD-TYPE     66     56     53     49     68     53
                                vv
clus                             CLUS_7
  DEL PEAK 26(10P15.3) MUTATED       11
  DEL PEAK 26(10P15.3) WILD-TYPE      7
D55V2, multiclass
        clus
vv       DEL PEAK 26(10P15.3) MUTATED DEL PEAK 26(10P15.3) WILD-TYPE
  CLUS_1                           18                             66
  CLUS_2                           23                             56
  CLUS_3                           43                             53
  CLUS_4                           43                             49
  CLUS_5                           10                             68
  CLUS_6                           22                             53
  CLUS_7                           11                              7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(10P15.3) MUTATED       20     16     16     19
  DEL PEAK 26(10P15.3) WILD-TYPE     33     35     21     46
D55V3, multiclass
        clus
vv       DEL PEAK 26(10P15.3) MUTATED DEL PEAK 26(10P15.3) WILD-TYPE
  CLUS_1                           20                             33
  CLUS_2                           16                             35
  CLUS_3                           16                             21
  CLUS_4                           19                             46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(10P15.3) MUTATED       29     27     15
  DEL PEAK 26(10P15.3) WILD-TYPE     47     55     33
D55V4, multiclass
        clus
vv       DEL PEAK 26(10P15.3) MUTATED DEL PEAK 26(10P15.3) WILD-TYPE
  CLUS_1                           29                             47
  CLUS_2                           27                             55
  CLUS_3                           15                             33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(10P15.3) MUTATED       54     62     52
  DEL PEAK 26(10P15.3) WILD-TYPE     87    150    109
D55V5, multiclass
        clus
vv       DEL PEAK 26(10P15.3) MUTATED DEL PEAK 26(10P15.3) WILD-TYPE
  CLUS_1                           54                             87
  CLUS_2                           62                            150
  CLUS_3                           52                            109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(10P15.3) MUTATED       66     33     60      9
  DEL PEAK 26(10P15.3) WILD-TYPE    110     70    110     56
D55V6, multiclass
        clus
vv       DEL PEAK 26(10P15.3) MUTATED DEL PEAK 26(10P15.3) WILD-TYPE
  CLUS_1                           66                            110
  CLUS_2                           33                             70
  CLUS_3                           60                            110
  CLUS_4                            9                             56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(10P15.3) MUTATED       73     37     58
  DEL PEAK 26(10P15.3) WILD-TYPE    148    115     87
D55V7, multiclass
        clus
vv       DEL PEAK 26(10P15.3) MUTATED DEL PEAK 26(10P15.3) WILD-TYPE
  CLUS_1                           73                            148
  CLUS_2                           37                            115
  CLUS_3                           58                             87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(10P15.3) MUTATED       67     52     49
  DEL PEAK 26(10P15.3) WILD-TYPE    123     90    137
D55V8, multiclass
        clus
vv       DEL PEAK 26(10P15.3) MUTATED DEL PEAK 26(10P15.3) WILD-TYPE
  CLUS_1                           67                            123
  CLUS_2                           52                             90
  CLUS_3                           49                            137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(10P15.3) MUTATED       29     42     24     53      7
  DEL PEAK 26(10P15.3) WILD-TYPE     43     98     74     63     40
D55V9, multiclass
        clus
vv       DEL PEAK 26(10P15.3) MUTATED DEL PEAK 26(10P15.3) WILD-TYPE
  CLUS_1                           29                             43
  CLUS_2                           42                             98
  CLUS_3                           24                             74
  CLUS_4                           53                             63
  CLUS_5                            7                             40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(10P15.3) MUTATED       52     73     30
  DEL PEAK 26(10P15.3) WILD-TYPE     88    171     59
D55V10, multiclass
        clus
vv       DEL PEAK 26(10P15.3) MUTATED DEL PEAK 26(10P15.3) WILD-TYPE
  CLUS_1                           52                             88
  CLUS_2                           73                            171
  CLUS_3                           30                             59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(56) Variable = DEL PEAK 27(10P11.21) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(10P11.21) MUTATED       74     50     24     14
  DEL PEAK 27(10P11.21) WILD-TYPE     81     85    165     29
D56V1, multiclass
        clus
vv       DEL PEAK 27(10P11.21) MUTATED DEL PEAK 27(10P11.21) WILD-TYPE
  CLUS_1                            74                              81
  CLUS_2                            50                              85
  CLUS_3                            24                             165
  CLUS_4                            14                              29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(10P11.21) MUTATED       14     24     42     42     12     19
  DEL PEAK 27(10P11.21) WILD-TYPE     70     55     54     50     66     56
                                 vv
clus                              CLUS_7
  DEL PEAK 27(10P11.21) MUTATED        9
  DEL PEAK 27(10P11.21) WILD-TYPE      9
D56V2, multiclass
        clus
vv       DEL PEAK 27(10P11.21) MUTATED DEL PEAK 27(10P11.21) WILD-TYPE
  CLUS_1                            14                              70
  CLUS_2                            24                              55
  CLUS_3                            42                              54
  CLUS_4                            42                              50
  CLUS_5                            12                              66
  CLUS_6                            19                              56
  CLUS_7                             9                               9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(10P11.21) MUTATED       20     14     15     19
  DEL PEAK 27(10P11.21) WILD-TYPE     33     37     22     46
D56V3, multiclass
        clus
vv       DEL PEAK 27(10P11.21) MUTATED DEL PEAK 27(10P11.21) WILD-TYPE
  CLUS_1                            20                              33
  CLUS_2                            14                              37
  CLUS_3                            15                              22
  CLUS_4                            19                              46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(10P11.21) MUTATED       31     22     15
  DEL PEAK 27(10P11.21) WILD-TYPE     45     60     33
D56V4, multiclass
        clus
vv       DEL PEAK 27(10P11.21) MUTATED DEL PEAK 27(10P11.21) WILD-TYPE
  CLUS_1                            31                              45
  CLUS_2                            22                              60
  CLUS_3                            15                              33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(10P11.21) MUTATED       52     61     47
  DEL PEAK 27(10P11.21) WILD-TYPE     89    151    114
D56V5, multiclass
        clus
vv       DEL PEAK 27(10P11.21) MUTATED DEL PEAK 27(10P11.21) WILD-TYPE
  CLUS_1                            52                              89
  CLUS_2                            61                             151
  CLUS_3                            47                             114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(10P11.21) MUTATED       60     34     56     10
  DEL PEAK 27(10P11.21) WILD-TYPE    116     69    114     55
D56V6, multiclass
        clus
vv       DEL PEAK 27(10P11.21) MUTATED DEL PEAK 27(10P11.21) WILD-TYPE
  CLUS_1                            60                             116
  CLUS_2                            34                              69
  CLUS_3                            56                             114
  CLUS_4                            10                              55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(10P11.21) MUTATED       75     35     50
  DEL PEAK 27(10P11.21) WILD-TYPE    146    117     95
D56V7, multiclass
        clus
vv       DEL PEAK 27(10P11.21) MUTATED DEL PEAK 27(10P11.21) WILD-TYPE
  CLUS_1                            75                             146
  CLUS_2                            35                             117
  CLUS_3                            50                              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(10P11.21) MUTATED       62     54     44
  DEL PEAK 27(10P11.21) WILD-TYPE    128     88    142
D56V8, multiclass
        clus
vv       DEL PEAK 27(10P11.21) MUTATED DEL PEAK 27(10P11.21) WILD-TYPE
  CLUS_1                            62                             128
  CLUS_2                            54                              88
  CLUS_3                            44                             142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(10P11.21) MUTATED       23     40     28     50      9
  DEL PEAK 27(10P11.21) WILD-TYPE     49    100     70     66     38
D56V9, multiclass
        clus
vv       DEL PEAK 27(10P11.21) MUTATED DEL PEAK 27(10P11.21) WILD-TYPE
  CLUS_1                            23                              49
  CLUS_2                            40                             100
  CLUS_3                            28                              70
  CLUS_4                            50                              66
  CLUS_5                             9                              38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(10P11.21) MUTATED       48     74     28
  DEL PEAK 27(10P11.21) WILD-TYPE     92    170     61
D56V10, multiclass
        clus
vv       DEL PEAK 27(10P11.21) MUTATED DEL PEAK 27(10P11.21) WILD-TYPE
  CLUS_1                            48                              92
  CLUS_2                            74                             170
  CLUS_3                            28                              61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(57) Variable = DEL PEAK 28(10Q23.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(10Q23.31) MUTATED       46     58     27      7
  DEL PEAK 28(10Q23.31) WILD-TYPE    109     77    162     36
D57V1, multiclass
        clus
vv       DEL PEAK 28(10Q23.31) MUTATED DEL PEAK 28(10Q23.31) WILD-TYPE
  CLUS_1                            46                             109
  CLUS_2                            58                              77
  CLUS_3                            27                             162
  CLUS_4                             7                              36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(10Q23.31) MUTATED        8     25     30     38     24      8
  DEL PEAK 28(10Q23.31) WILD-TYPE     76     54     66     54     54     67
                                 vv
clus                              CLUS_7
  DEL PEAK 28(10Q23.31) MUTATED        5
  DEL PEAK 28(10Q23.31) WILD-TYPE     13
D57V2, multiclass
        clus
vv       DEL PEAK 28(10Q23.31) MUTATED DEL PEAK 28(10Q23.31) WILD-TYPE
  CLUS_1                             8                              76
  CLUS_2                            25                              54
  CLUS_3                            30                              66
  CLUS_4                            38                              54
  CLUS_5                            24                              54
  CLUS_6                             8                              67
  CLUS_7                             5                              13
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(10Q23.31) MUTATED       16     19      6     15
  DEL PEAK 28(10Q23.31) WILD-TYPE     37     32     31     50
D57V3, multiclass
        clus
vv       DEL PEAK 28(10Q23.31) MUTATED DEL PEAK 28(10Q23.31) WILD-TYPE
  CLUS_1                            16                              37
  CLUS_2                            19                              32
  CLUS_3                             6                              31
  CLUS_4                            15                              50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(10Q23.31) MUTATED       20     23     13
  DEL PEAK 28(10Q23.31) WILD-TYPE     56     59     35
D57V4, multiclass
        clus
vv       DEL PEAK 28(10Q23.31) MUTATED DEL PEAK 28(10Q23.31) WILD-TYPE
  CLUS_1                            20                              56
  CLUS_2                            23                              59
  CLUS_3                            13                              35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(10Q23.31) MUTATED       36     73     27
  DEL PEAK 28(10Q23.31) WILD-TYPE    105    139    134
D57V5, multiclass
        clus
vv       DEL PEAK 28(10Q23.31) MUTATED DEL PEAK 28(10Q23.31) WILD-TYPE
  CLUS_1                            36                             105
  CLUS_2                            73                             139
  CLUS_3                            27                             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(10Q23.31) MUTATED       45     39     31     21
  DEL PEAK 28(10Q23.31) WILD-TYPE    131     64    139     44
D57V6, multiclass
        clus
vv       DEL PEAK 28(10Q23.31) MUTATED DEL PEAK 28(10Q23.31) WILD-TYPE
  CLUS_1                            45                             131
  CLUS_2                            39                              64
  CLUS_3                            31                             139
  CLUS_4                            21                              44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(10Q23.31) MUTATED       70     29     36
  DEL PEAK 28(10Q23.31) WILD-TYPE    151    123    109
D57V7, multiclass
        clus
vv       DEL PEAK 28(10Q23.31) MUTATED DEL PEAK 28(10Q23.31) WILD-TYPE
  CLUS_1                            70                             151
  CLUS_2                            29                             123
  CLUS_3                            36                             109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(10Q23.31) MUTATED       49     42     44
  DEL PEAK 28(10Q23.31) WILD-TYPE    141    100    142
D57V8, multiclass
        clus
vv       DEL PEAK 28(10Q23.31) MUTATED DEL PEAK 28(10Q23.31) WILD-TYPE
  CLUS_1                            49                             141
  CLUS_2                            42                             100
  CLUS_3                            44                             142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(10Q23.31) MUTATED       21     24     42     24     14
  DEL PEAK 28(10Q23.31) WILD-TYPE     51    116     56     92     33
D57V9, multiclass
        clus
vv       DEL PEAK 28(10Q23.31) MUTATED DEL PEAK 28(10Q23.31) WILD-TYPE
  CLUS_1                            21                              51
  CLUS_2                            24                             116
  CLUS_3                            42                              56
  CLUS_4                            24                              92
  CLUS_5                            14                              33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(10Q23.31) MUTATED       39     72     14
  DEL PEAK 28(10Q23.31) WILD-TYPE    101    172     75
D57V10, multiclass
        clus
vv       DEL PEAK 28(10Q23.31) MUTATED DEL PEAK 28(10Q23.31) WILD-TYPE
  CLUS_1                            39                             101
  CLUS_2                            72                             172
  CLUS_3                            14                              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(58) Variable = DEL PEAK 29(11P15.5) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(11P15.5) MUTATED       42     80     35      6
  DEL PEAK 29(11P15.5) WILD-TYPE    113     55    154     37
D58V1, multiclass
        clus
vv       DEL PEAK 29(11P15.5) MUTATED DEL PEAK 29(11P15.5) WILD-TYPE
  CLUS_1                           42                            113
  CLUS_2                           80                             55
  CLUS_3                           35                            154
  CLUS_4                            6                             37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 29(11P15.5) MUTATED       20     30     24     53     26      6
  DEL PEAK 29(11P15.5) WILD-TYPE     64     49     72     39     52     69
                                vv
clus                             CLUS_7
  DEL PEAK 29(11P15.5) MUTATED        4
  DEL PEAK 29(11P15.5) WILD-TYPE     14
D58V2, multiclass
        clus
vv       DEL PEAK 29(11P15.5) MUTATED DEL PEAK 29(11P15.5) WILD-TYPE
  CLUS_1                           20                             64
  CLUS_2                           30                             49
  CLUS_3                           24                             72
  CLUS_4                           53                             39
  CLUS_5                           26                             52
  CLUS_6                            6                             69
  CLUS_7                            4                             14
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(11P15.5) MUTATED       17     19     11     20
  DEL PEAK 29(11P15.5) WILD-TYPE     36     32     26     45
D58V3, multiclass
        clus
vv       DEL PEAK 29(11P15.5) MUTATED DEL PEAK 29(11P15.5) WILD-TYPE
  CLUS_1                           17                             36
  CLUS_2                           19                             32
  CLUS_3                           11                             26
  CLUS_4                           20                             45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(11P15.5) MUTATED       21     32     14
  DEL PEAK 29(11P15.5) WILD-TYPE     55     50     34
D58V4, multiclass
        clus
vv       DEL PEAK 29(11P15.5) MUTATED DEL PEAK 29(11P15.5) WILD-TYPE
  CLUS_1                           21                             55
  CLUS_2                           32                             50
  CLUS_3                           14                             34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(11P15.5) MUTATED       39     90     32
  DEL PEAK 29(11P15.5) WILD-TYPE    102    122    129
D58V5, multiclass
        clus
vv       DEL PEAK 29(11P15.5) MUTATED DEL PEAK 29(11P15.5) WILD-TYPE
  CLUS_1                           39                            102
  CLUS_2                           90                            122
  CLUS_3                           32                            129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(11P15.5) MUTATED       42     43     52     24
  DEL PEAK 29(11P15.5) WILD-TYPE    134     60    118     41
D58V6, multiclass
        clus
vv       DEL PEAK 29(11P15.5) MUTATED DEL PEAK 29(11P15.5) WILD-TYPE
  CLUS_1                           42                            134
  CLUS_2                           43                             60
  CLUS_3                           52                            118
  CLUS_4                           24                             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(11P15.5) MUTATED       98     25     40
  DEL PEAK 29(11P15.5) WILD-TYPE    123    127    105
D58V7, multiclass
        clus
vv       DEL PEAK 29(11P15.5) MUTATED DEL PEAK 29(11P15.5) WILD-TYPE
  CLUS_1                           98                            123
  CLUS_2                           25                            127
  CLUS_3                           40                            105
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(11P15.5) MUTATED       46     59     58
  DEL PEAK 29(11P15.5) WILD-TYPE    144     83    128
D58V8, multiclass
        clus
vv       DEL PEAK 29(11P15.5) MUTATED DEL PEAK 29(11P15.5) WILD-TYPE
  CLUS_1                           46                            144
  CLUS_2                           59                             83
  CLUS_3                           58                            128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(11P15.5) MUTATED       25     27     47     31     16
  DEL PEAK 29(11P15.5) WILD-TYPE     47    113     51     85     31
D58V9, multiclass
        clus
vv       DEL PEAK 29(11P15.5) MUTATED DEL PEAK 29(11P15.5) WILD-TYPE
  CLUS_1                           25                             47
  CLUS_2                           27                            113
  CLUS_3                           47                             51
  CLUS_4                           31                             85
  CLUS_5                           16                             31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(11P15.5) MUTATED       38     90     18
  DEL PEAK 29(11P15.5) WILD-TYPE    102    154     71
D58V10, multiclass
        clus
vv       DEL PEAK 29(11P15.5) MUTATED DEL PEAK 29(11P15.5) WILD-TYPE
  CLUS_1                           38                            102
  CLUS_2                           90                            154
  CLUS_3                           18                             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(59) Variable = DEL PEAK 30(11Q23.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(11Q23.1) MUTATED       72     89     66     19
  DEL PEAK 30(11Q23.1) WILD-TYPE     83     46    123     24
D59V1, multiclass
        clus
vv       DEL PEAK 30(11Q23.1) MUTATED DEL PEAK 30(11Q23.1) WILD-TYPE
  CLUS_1                           72                             83
  CLUS_2                           89                             46
  CLUS_3                           66                            123
  CLUS_4                           19                             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 30(11Q23.1) MUTATED       27     33     49     49     65     13
  DEL PEAK 30(11Q23.1) WILD-TYPE     57     46     47     43     13     62
                                vv
clus                             CLUS_7
  DEL PEAK 30(11Q23.1) MUTATED       10
  DEL PEAK 30(11Q23.1) WILD-TYPE      8
D59V2, multiclass
        clus
vv       DEL PEAK 30(11Q23.1) MUTATED DEL PEAK 30(11Q23.1) WILD-TYPE
  CLUS_1                           27                             57
  CLUS_2                           33                             46
  CLUS_3                           49                             47
  CLUS_4                           49                             43
  CLUS_5                           65                             13
  CLUS_6                           13                             62
  CLUS_7                           10                              8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(11Q23.1) MUTATED       25     31     18     24
  DEL PEAK 30(11Q23.1) WILD-TYPE     28     20     19     41
D59V3, multiclass
        clus
vv       DEL PEAK 30(11Q23.1) MUTATED DEL PEAK 30(11Q23.1) WILD-TYPE
  CLUS_1                           25                             28
  CLUS_2                           31                             20
  CLUS_3                           18                             19
  CLUS_4                           24                             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(11Q23.1) MUTATED       39     42     17
  DEL PEAK 30(11Q23.1) WILD-TYPE     37     40     31
D59V4, multiclass
        clus
vv       DEL PEAK 30(11Q23.1) MUTATED DEL PEAK 30(11Q23.1) WILD-TYPE
  CLUS_1                           39                             37
  CLUS_2                           42                             40
  CLUS_3                           17                             31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(11Q23.1) MUTATED       61    126     55
  DEL PEAK 30(11Q23.1) WILD-TYPE     80     86    106
D59V5, multiclass
        clus
vv       DEL PEAK 30(11Q23.1) MUTATED DEL PEAK 30(11Q23.1) WILD-TYPE
  CLUS_1                           61                             80
  CLUS_2                          126                             86
  CLUS_3                           55                            106
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(11Q23.1) MUTATED       74     42     71     55
  DEL PEAK 30(11Q23.1) WILD-TYPE    102     61     99     10
D59V6, multiclass
        clus
vv       DEL PEAK 30(11Q23.1) MUTATED DEL PEAK 30(11Q23.1) WILD-TYPE
  CLUS_1                           74                            102
  CLUS_2                           42                             61
  CLUS_3                           71                             99
  CLUS_4                           55                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(11Q23.1) MUTATED      121     59     65
  DEL PEAK 30(11Q23.1) WILD-TYPE    100     93     80
D59V7, multiclass
        clus
vv       DEL PEAK 30(11Q23.1) MUTATED DEL PEAK 30(11Q23.1) WILD-TYPE
  CLUS_1                          121                            100
  CLUS_2                           59                             93
  CLUS_3                           65                             80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(11Q23.1) MUTATED       80     61    104
  DEL PEAK 30(11Q23.1) WILD-TYPE    110     81     82
D59V8, multiclass
        clus
vv       DEL PEAK 30(11Q23.1) MUTATED DEL PEAK 30(11Q23.1) WILD-TYPE
  CLUS_1                           80                            110
  CLUS_2                           61                             81
  CLUS_3                          104                             82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(11Q23.1) MUTATED       33     55     53     52     28
  DEL PEAK 30(11Q23.1) WILD-TYPE     39     85     45     64     19
D59V9, multiclass
        clus
vv       DEL PEAK 30(11Q23.1) MUTATED DEL PEAK 30(11Q23.1) WILD-TYPE
  CLUS_1                           33                             39
  CLUS_2                           55                             85
  CLUS_3                           53                             45
  CLUS_4                           52                             64
  CLUS_5                           28                             19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(11Q23.1) MUTATED       61    123     37
  DEL PEAK 30(11Q23.1) WILD-TYPE     79    121     52
D59V10, multiclass
        clus
vv       DEL PEAK 30(11Q23.1) MUTATED DEL PEAK 30(11Q23.1) WILD-TYPE
  CLUS_1                           61                             79
  CLUS_2                          123                            121
  CLUS_3                           37                             52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(60) Variable = DEL PEAK 31(12Q24.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(12Q24.33) MUTATED       26     28      6      3
  DEL PEAK 31(12Q24.33) WILD-TYPE    129    107    183     40
D60V1, multiclass
        clus
vv       DEL PEAK 31(12Q24.33) MUTATED DEL PEAK 31(12Q24.33) WILD-TYPE
  CLUS_1                            26                             129
  CLUS_2                            28                             107
  CLUS_3                             6                             183
  CLUS_4                             3                              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 31(12Q24.33) MUTATED        5     13     13     23      4      1
  DEL PEAK 31(12Q24.33) WILD-TYPE     79     66     83     69     74     74
                                 vv
clus                              CLUS_7
  DEL PEAK 31(12Q24.33) MUTATED        4
  DEL PEAK 31(12Q24.33) WILD-TYPE     14
D60V2, multiclass
        clus
vv       DEL PEAK 31(12Q24.33) MUTATED DEL PEAK 31(12Q24.33) WILD-TYPE
  CLUS_1                             5                              79
  CLUS_2                            13                              66
  CLUS_3                            13                              83
  CLUS_4                            23                              69
  CLUS_5                             4                              74
  CLUS_6                             1                              74
  CLUS_7                             4                              14
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(12Q24.33) MUTATED        9      9      4      7
  DEL PEAK 31(12Q24.33) WILD-TYPE     44     42     33     58
D60V3, multiclass
        clus
vv       DEL PEAK 31(12Q24.33) MUTATED DEL PEAK 31(12Q24.33) WILD-TYPE
  CLUS_1                             9                              44
  CLUS_2                             9                              42
  CLUS_3                             4                              33
  CLUS_4                             7                              58
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(12Q24.33) MUTATED       12     13      4
  DEL PEAK 31(12Q24.33) WILD-TYPE     64     69     44
D60V4, multiclass
        clus
vv       DEL PEAK 31(12Q24.33) MUTATED DEL PEAK 31(12Q24.33) WILD-TYPE
  CLUS_1                            12                              64
  CLUS_2                            13                              69
  CLUS_3                             4                              44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(12Q24.33) MUTATED       16     29     17
  DEL PEAK 31(12Q24.33) WILD-TYPE    125    183    144
D60V5, multiclass
        clus
vv       DEL PEAK 31(12Q24.33) MUTATED DEL PEAK 31(12Q24.33) WILD-TYPE
  CLUS_1                            16                             125
  CLUS_2                            29                             183
  CLUS_3                            17                             144
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(12Q24.33) MUTATED       21     19     18      4
  DEL PEAK 31(12Q24.33) WILD-TYPE    155     84    152     61
D60V6, multiclass
        clus
vv       DEL PEAK 31(12Q24.33) MUTATED DEL PEAK 31(12Q24.33) WILD-TYPE
  CLUS_1                            21                             155
  CLUS_2                            19                              84
  CLUS_3                            18                             152
  CLUS_4                             4                              61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(12Q24.33) MUTATED       30     16     14
  DEL PEAK 31(12Q24.33) WILD-TYPE    191    136    131
D60V7, multiclass
        clus
vv       DEL PEAK 31(12Q24.33) MUTATED DEL PEAK 31(12Q24.33) WILD-TYPE
  CLUS_1                            30                             191
  CLUS_2                            16                             136
  CLUS_3                            14                             131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(12Q24.33) MUTATED       17     23     20
  DEL PEAK 31(12Q24.33) WILD-TYPE    173    119    166
D60V8, multiclass
        clus
vv       DEL PEAK 31(12Q24.33) MUTATED DEL PEAK 31(12Q24.33) WILD-TYPE
  CLUS_1                            17                             173
  CLUS_2                            23                             119
  CLUS_3                            20                             166
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(12Q24.33) MUTATED        7     14     14     17      1
  DEL PEAK 31(12Q24.33) WILD-TYPE     65    126     84     99     46
D60V9, multiclass
        clus
vv       DEL PEAK 31(12Q24.33) MUTATED DEL PEAK 31(12Q24.33) WILD-TYPE
  CLUS_1                             7                              65
  CLUS_2                            14                             126
  CLUS_3                            14                              84
  CLUS_4                            17                              99
  CLUS_5                             1                              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(12Q24.33) MUTATED       16     30      7
  DEL PEAK 31(12Q24.33) WILD-TYPE    124    214     82
D60V10, multiclass
        clus
vv       DEL PEAK 31(12Q24.33) MUTATED DEL PEAK 31(12Q24.33) WILD-TYPE
  CLUS_1                            16                             124
  CLUS_2                            30                             214
  CLUS_3                             7                              82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(61) Variable = DEL PEAK 32(13Q12.11) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(13Q12.11) MUTATED       80     98     37     18
  DEL PEAK 32(13Q12.11) WILD-TYPE     75     37    152     25
D61V1, multiclass
        clus
vv       DEL PEAK 32(13Q12.11) MUTATED DEL PEAK 32(13Q12.11) WILD-TYPE
  CLUS_1                            80                              75
  CLUS_2                            98                              37
  CLUS_3                            37                             152
  CLUS_4                            18                              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 32(13Q12.11) MUTATED       22     53     48     61     25     17
  DEL PEAK 32(13Q12.11) WILD-TYPE     62     26     48     31     53     58
                                 vv
clus                              CLUS_7
  DEL PEAK 32(13Q12.11) MUTATED        7
  DEL PEAK 32(13Q12.11) WILD-TYPE     11
D61V2, multiclass
        clus
vv       DEL PEAK 32(13Q12.11) MUTATED DEL PEAK 32(13Q12.11) WILD-TYPE
  CLUS_1                            22                              62
  CLUS_2                            53                              26
  CLUS_3                            48                              48
  CLUS_4                            61                              31
  CLUS_5                            25                              53
  CLUS_6                            17                              58
  CLUS_7                             7                              11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(13Q12.11) MUTATED       21     31     16     30
  DEL PEAK 32(13Q12.11) WILD-TYPE     32     20     21     35
D61V3, multiclass
        clus
vv       DEL PEAK 32(13Q12.11) MUTATED DEL PEAK 32(13Q12.11) WILD-TYPE
  CLUS_1                            21                              32
  CLUS_2                            31                              20
  CLUS_3                            16                              21
  CLUS_4                            30                              35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(13Q12.11) MUTATED       32     45     21
  DEL PEAK 32(13Q12.11) WILD-TYPE     44     37     27
D61V4, multiclass
        clus
vv       DEL PEAK 32(13Q12.11) MUTATED DEL PEAK 32(13Q12.11) WILD-TYPE
  CLUS_1                            32                              44
  CLUS_2                            45                              37
  CLUS_3                            21                              27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(13Q12.11) MUTATED       67    105     58
  DEL PEAK 32(13Q12.11) WILD-TYPE     74    107    103
D61V5, multiclass
        clus
vv       DEL PEAK 32(13Q12.11) MUTATED DEL PEAK 32(13Q12.11) WILD-TYPE
  CLUS_1                            67                              74
  CLUS_2                           105                             107
  CLUS_3                            58                             103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(13Q12.11) MUTATED       83     66     62     19
  DEL PEAK 32(13Q12.11) WILD-TYPE     93     37    108     46
D61V6, multiclass
        clus
vv       DEL PEAK 32(13Q12.11) MUTATED DEL PEAK 32(13Q12.11) WILD-TYPE
  CLUS_1                            83                              93
  CLUS_2                            66                              37
  CLUS_3                            62                             108
  CLUS_4                            19                              46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(13Q12.11) MUTATED      104     62     66
  DEL PEAK 32(13Q12.11) WILD-TYPE    117     90     79
D61V7, multiclass
        clus
vv       DEL PEAK 32(13Q12.11) MUTATED DEL PEAK 32(13Q12.11) WILD-TYPE
  CLUS_1                           104                             117
  CLUS_2                            62                              90
  CLUS_3                            66                              79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(13Q12.11) MUTATED       86     75     71
  DEL PEAK 32(13Q12.11) WILD-TYPE    104     67    115
D61V8, multiclass
        clus
vv       DEL PEAK 32(13Q12.11) MUTATED DEL PEAK 32(13Q12.11) WILD-TYPE
  CLUS_1                            86                             104
  CLUS_2                            75                              67
  CLUS_3                            71                             115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(13Q12.11) MUTATED       42     58     52     49     14
  DEL PEAK 32(13Q12.11) WILD-TYPE     30     82     46     67     33
D61V9, multiclass
        clus
vv       DEL PEAK 32(13Q12.11) MUTATED DEL PEAK 32(13Q12.11) WILD-TYPE
  CLUS_1                            42                              30
  CLUS_2                            58                              82
  CLUS_3                            52                              46
  CLUS_4                            49                              67
  CLUS_5                            14                              33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(13Q12.11) MUTATED       66    110     39
  DEL PEAK 32(13Q12.11) WILD-TYPE     74    134     50
D61V10, multiclass
        clus
vv       DEL PEAK 32(13Q12.11) MUTATED DEL PEAK 32(13Q12.11) WILD-TYPE
  CLUS_1                            66                              74
  CLUS_2                           110                             134
  CLUS_3                            39                              50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(62) Variable = DEL PEAK 33(13Q14.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(13Q14.2) MUTATED       53     92     55     17
  DEL PEAK 33(13Q14.2) WILD-TYPE    102     43    134     26
D62V1, multiclass
        clus
vv       DEL PEAK 33(13Q14.2) MUTATED DEL PEAK 33(13Q14.2) WILD-TYPE
  CLUS_1                           53                            102
  CLUS_2                           92                             43
  CLUS_3                           55                            134
  CLUS_4                           17                             26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 33(13Q14.2) MUTATED       18     46     39     51     44     16
  DEL PEAK 33(13Q14.2) WILD-TYPE     66     33     57     41     34     59
                                vv
clus                             CLUS_7
  DEL PEAK 33(13Q14.2) MUTATED        3
  DEL PEAK 33(13Q14.2) WILD-TYPE     15
D62V2, multiclass
        clus
vv       DEL PEAK 33(13Q14.2) MUTATED DEL PEAK 33(13Q14.2) WILD-TYPE
  CLUS_1                           18                             66
  CLUS_2                           46                             33
  CLUS_3                           39                             57
  CLUS_4                           51                             41
  CLUS_5                           44                             34
  CLUS_6                           16                             59
  CLUS_7                            3                             15
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(13Q14.2) MUTATED       19     28     14     22
  DEL PEAK 33(13Q14.2) WILD-TYPE     34     23     23     43
D62V3, multiclass
        clus
vv       DEL PEAK 33(13Q14.2) MUTATED DEL PEAK 33(13Q14.2) WILD-TYPE
  CLUS_1                           19                             34
  CLUS_2                           28                             23
  CLUS_3                           14                             23
  CLUS_4                           22                             43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(13Q14.2) MUTATED       27     35     21
  DEL PEAK 33(13Q14.2) WILD-TYPE     49     47     27
D62V4, multiclass
        clus
vv       DEL PEAK 33(13Q14.2) MUTATED DEL PEAK 33(13Q14.2) WILD-TYPE
  CLUS_1                           27                             49
  CLUS_2                           35                             47
  CLUS_3                           21                             27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(13Q14.2) MUTATED       55    116     44
  DEL PEAK 33(13Q14.2) WILD-TYPE     86     96    117
D62V5, multiclass
        clus
vv       DEL PEAK 33(13Q14.2) MUTATED DEL PEAK 33(13Q14.2) WILD-TYPE
  CLUS_1                           55                             86
  CLUS_2                          116                             96
  CLUS_3                           44                            117
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(13Q14.2) MUTATED       70     55     52     38
  DEL PEAK 33(13Q14.2) WILD-TYPE    106     48    118     27
D62V6, multiclass
        clus
vv       DEL PEAK 33(13Q14.2) MUTATED DEL PEAK 33(13Q14.2) WILD-TYPE
  CLUS_1                           70                            106
  CLUS_2                           55                             48
  CLUS_3                           52                            118
  CLUS_4                           38                             27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(13Q14.2) MUTATED      112     50     54
  DEL PEAK 33(13Q14.2) WILD-TYPE    109    102     91
D62V7, multiclass
        clus
vv       DEL PEAK 33(13Q14.2) MUTATED DEL PEAK 33(13Q14.2) WILD-TYPE
  CLUS_1                          112                            109
  CLUS_2                           50                            102
  CLUS_3                           54                             91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(13Q14.2) MUTATED       70     65     81
  DEL PEAK 33(13Q14.2) WILD-TYPE    120     77    105
D62V8, multiclass
        clus
vv       DEL PEAK 33(13Q14.2) MUTATED DEL PEAK 33(13Q14.2) WILD-TYPE
  CLUS_1                           70                            120
  CLUS_2                           65                             77
  CLUS_3                           81                            105
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(13Q14.2) MUTATED       35     49     56     38     20
  DEL PEAK 33(13Q14.2) WILD-TYPE     37     91     42     78     27
D62V9, multiclass
        clus
vv       DEL PEAK 33(13Q14.2) MUTATED DEL PEAK 33(13Q14.2) WILD-TYPE
  CLUS_1                           35                             37
  CLUS_2                           49                             91
  CLUS_3                           56                             42
  CLUS_4                           38                             78
  CLUS_5                           20                             27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(13Q14.2) MUTATED       52    113     33
  DEL PEAK 33(13Q14.2) WILD-TYPE     88    131     56
D62V10, multiclass
        clus
vv       DEL PEAK 33(13Q14.2) MUTATED DEL PEAK 33(13Q14.2) WILD-TYPE
  CLUS_1                           52                             88
  CLUS_2                          113                            131
  CLUS_3                           33                             56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(63) Variable = DEL PEAK 34(14Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(14Q11.2) MUTATED       27     31     15      2
  DEL PEAK 34(14Q11.2) WILD-TYPE    128    104    174     41
D63V1, multiclass
        clus
vv       DEL PEAK 34(14Q11.2) MUTATED DEL PEAK 34(14Q11.2) WILD-TYPE
  CLUS_1                           27                            128
  CLUS_2                           31                            104
  CLUS_3                           15                            174
  CLUS_4                            2                             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 34(14Q11.2) MUTATED        5     19     12     18      9      8
  DEL PEAK 34(14Q11.2) WILD-TYPE     79     60     84     74     69     67
                                vv
clus                             CLUS_7
  DEL PEAK 34(14Q11.2) MUTATED        4
  DEL PEAK 34(14Q11.2) WILD-TYPE     14
D63V2, multiclass
        clus
vv       DEL PEAK 34(14Q11.2) MUTATED DEL PEAK 34(14Q11.2) WILD-TYPE
  CLUS_1                            5                             79
  CLUS_2                           19                             60
  CLUS_3                           12                             84
  CLUS_4                           18                             74
  CLUS_5                            9                             69
  CLUS_6                            8                             67
  CLUS_7                            4                             14
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(14Q11.2) MUTATED        5      9      7      6
  DEL PEAK 34(14Q11.2) WILD-TYPE     48     42     30     59
D63V3, multiclass
        clus
vv       DEL PEAK 34(14Q11.2) MUTATED DEL PEAK 34(14Q11.2) WILD-TYPE
  CLUS_1                            5                             48
  CLUS_2                            9                             42
  CLUS_3                            7                             30
  CLUS_4                            6                             59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(14Q11.2) MUTATED        9     11      7
  DEL PEAK 34(14Q11.2) WILD-TYPE     67     71     41
D63V4, multiclass
        clus
vv       DEL PEAK 34(14Q11.2) MUTATED DEL PEAK 34(14Q11.2) WILD-TYPE
  CLUS_1                            9                             67
  CLUS_2                           11                             71
  CLUS_3                            7                             41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(14Q11.2) MUTATED       17     39     18
  DEL PEAK 34(14Q11.2) WILD-TYPE    124    173    143
D63V5, multiclass
        clus
vv       DEL PEAK 34(14Q11.2) MUTATED DEL PEAK 34(14Q11.2) WILD-TYPE
  CLUS_1                           17                            124
  CLUS_2                           39                            173
  CLUS_3                           18                            143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(14Q11.2) MUTATED       19     21     23     11
  DEL PEAK 34(14Q11.2) WILD-TYPE    157     82    147     54
D63V6, multiclass
        clus
vv       DEL PEAK 34(14Q11.2) MUTATED DEL PEAK 34(14Q11.2) WILD-TYPE
  CLUS_1                           19                            157
  CLUS_2                           21                             82
  CLUS_3                           23                            147
  CLUS_4                           11                             54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(14Q11.2) MUTATED       43     16     13
  DEL PEAK 34(14Q11.2) WILD-TYPE    178    136    132
D63V7, multiclass
        clus
vv       DEL PEAK 34(14Q11.2) MUTATED DEL PEAK 34(14Q11.2) WILD-TYPE
  CLUS_1                           43                            178
  CLUS_2                           16                            136
  CLUS_3                           13                            132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(14Q11.2) MUTATED       20     29     23
  DEL PEAK 34(14Q11.2) WILD-TYPE    170    113    163
D63V8, multiclass
        clus
vv       DEL PEAK 34(14Q11.2) MUTATED DEL PEAK 34(14Q11.2) WILD-TYPE
  CLUS_1                           20                            170
  CLUS_2                           29                            113
  CLUS_3                           23                            163
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 34(14Q11.2) MUTATED       10      9     25     18      5
  DEL PEAK 34(14Q11.2) WILD-TYPE     62    131     73     98     42
D63V9, multiclass
        clus
vv       DEL PEAK 34(14Q11.2) MUTATED DEL PEAK 34(14Q11.2) WILD-TYPE
  CLUS_1                           10                             62
  CLUS_2                            9                            131
  CLUS_3                           25                             73
  CLUS_4                           18                             98
  CLUS_5                            5                             42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(14Q11.2) MUTATED       17     42      8
  DEL PEAK 34(14Q11.2) WILD-TYPE    123    202     81
D63V10, multiclass
        clus
vv       DEL PEAK 34(14Q11.2) MUTATED DEL PEAK 34(14Q11.2) WILD-TYPE
  CLUS_1                           17                            123
  CLUS_2                           42                            202
  CLUS_3                            8                             81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(64) Variable = DEL PEAK 35(14Q32.32) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(14Q32.32) MUTATED       11     26     32      6
  DEL PEAK 35(14Q32.32) WILD-TYPE    144    109    157     37
D64V1, multiclass
        clus
vv       DEL PEAK 35(14Q32.32) MUTATED DEL PEAK 35(14Q32.32) WILD-TYPE
  CLUS_1                            11                             144
  CLUS_2                            26                             109
  CLUS_3                            32                             157
  CLUS_4                             6                              37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 35(14Q32.32) MUTATED        3     11      7     18     32      3
  DEL PEAK 35(14Q32.32) WILD-TYPE     81     68     89     74     46     72
                                 vv
clus                              CLUS_7
  DEL PEAK 35(14Q32.32) MUTATED        1
  DEL PEAK 35(14Q32.32) WILD-TYPE     17
D64V2, multiclass
        clus
vv       DEL PEAK 35(14Q32.32) MUTATED DEL PEAK 35(14Q32.32) WILD-TYPE
  CLUS_1                             3                              81
  CLUS_2                            11                              68
  CLUS_3                             7                              89
  CLUS_4                            18                              74
  CLUS_5                            32                              46
  CLUS_6                             3                              72
  CLUS_7                             1                              17
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(14Q32.32) MUTATED        8     14      2      6
  DEL PEAK 35(14Q32.32) WILD-TYPE     45     37     35     59
D64V3, multiclass
        clus
vv       DEL PEAK 35(14Q32.32) MUTATED DEL PEAK 35(14Q32.32) WILD-TYPE
  CLUS_1                             8                              45
  CLUS_2                            14                              37
  CLUS_3                             2                              35
  CLUS_4                             6                              59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(14Q32.32) MUTATED       10     15      5
  DEL PEAK 35(14Q32.32) WILD-TYPE     66     67     43
D64V4, multiclass
        clus
vv       DEL PEAK 35(14Q32.32) MUTATED DEL PEAK 35(14Q32.32) WILD-TYPE
  CLUS_1                            10                              66
  CLUS_2                            15                              67
  CLUS_3                             5                              43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(14Q32.32) MUTATED       17     49      7
  DEL PEAK 35(14Q32.32) WILD-TYPE    124    163    154
D64V5, multiclass
        clus
vv       DEL PEAK 35(14Q32.32) MUTATED DEL PEAK 35(14Q32.32) WILD-TYPE
  CLUS_1                            17                             124
  CLUS_2                            49                             163
  CLUS_3                             7                             154
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(14Q32.32) MUTATED       21     15      9     28
  DEL PEAK 35(14Q32.32) WILD-TYPE    155     88    161     37
D64V6, multiclass
        clus
vv       DEL PEAK 35(14Q32.32) MUTATED DEL PEAK 35(14Q32.32) WILD-TYPE
  CLUS_1                            21                             155
  CLUS_2                            15                              88
  CLUS_3                             9                             161
  CLUS_4                            28                              37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(14Q32.32) MUTATED       46     12     16
  DEL PEAK 35(14Q32.32) WILD-TYPE    175    140    129
D64V7, multiclass
        clus
vv       DEL PEAK 35(14Q32.32) MUTATED DEL PEAK 35(14Q32.32) WILD-TYPE
  CLUS_1                            46                             175
  CLUS_2                            12                             140
  CLUS_3                            16                             129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(14Q32.32) MUTATED       21     16     37
  DEL PEAK 35(14Q32.32) WILD-TYPE    169    126    149
D64V8, multiclass
        clus
vv       DEL PEAK 35(14Q32.32) MUTATED DEL PEAK 35(14Q32.32) WILD-TYPE
  CLUS_1                            21                             169
  CLUS_2                            16                             126
  CLUS_3                            37                             149
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 35(14Q32.32) MUTATED       11      8     28      5     15
  DEL PEAK 35(14Q32.32) WILD-TYPE     61    132     70    111     32
D64V9, multiclass
        clus
vv       DEL PEAK 35(14Q32.32) MUTATED DEL PEAK 35(14Q32.32) WILD-TYPE
  CLUS_1                            11                              61
  CLUS_2                             8                             132
  CLUS_3                            28                              70
  CLUS_4                             5                             111
  CLUS_5                            15                              32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(14Q32.32) MUTATED       19     45      3
  DEL PEAK 35(14Q32.32) WILD-TYPE    121    199     86
D64V10, multiclass
        clus
vv       DEL PEAK 35(14Q32.32) MUTATED DEL PEAK 35(14Q32.32) WILD-TYPE
  CLUS_1                            19                             121
  CLUS_2                            45                             199
  CLUS_3                             3                              86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(65) Variable = DEL PEAK 36(15Q15.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(15Q15.1) MUTATED       49     35     21     19
  DEL PEAK 36(15Q15.1) WILD-TYPE    106    100    168     24
D65V1, multiclass
        clus
vv       DEL PEAK 36(15Q15.1) MUTATED DEL PEAK 36(15Q15.1) WILD-TYPE
  CLUS_1                           49                            106
  CLUS_2                           35                            100
  CLUS_3                           21                            168
  CLUS_4                           19                             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 36(15Q15.1) MUTATED       16     20     24     31     14     13
  DEL PEAK 36(15Q15.1) WILD-TYPE     68     59     72     61     64     62
                                vv
clus                             CLUS_7
  DEL PEAK 36(15Q15.1) MUTATED        6
  DEL PEAK 36(15Q15.1) WILD-TYPE     12
D65V2, multiclass
        clus
vv       DEL PEAK 36(15Q15.1) MUTATED DEL PEAK 36(15Q15.1) WILD-TYPE
  CLUS_1                           16                             68
  CLUS_2                           20                             59
  CLUS_3                           24                             72
  CLUS_4                           31                             61
  CLUS_5                           14                             64
  CLUS_6                           13                             62
  CLUS_7                            6                             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(15Q15.1) MUTATED       13     16      8     20
  DEL PEAK 36(15Q15.1) WILD-TYPE     40     35     29     45
D65V3, multiclass
        clus
vv       DEL PEAK 36(15Q15.1) MUTATED DEL PEAK 36(15Q15.1) WILD-TYPE
  CLUS_1                           13                             40
  CLUS_2                           16                             35
  CLUS_3                            8                             29
  CLUS_4                           20                             45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(15Q15.1) MUTATED       17     26     14
  DEL PEAK 36(15Q15.1) WILD-TYPE     59     56     34
D65V4, multiclass
        clus
vv       DEL PEAK 36(15Q15.1) MUTATED DEL PEAK 36(15Q15.1) WILD-TYPE
  CLUS_1                           17                             59
  CLUS_2                           26                             56
  CLUS_3                           14                             34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(15Q15.1) MUTATED       42     53     29
  DEL PEAK 36(15Q15.1) WILD-TYPE     99    159    132
D65V5, multiclass
        clus
vv       DEL PEAK 36(15Q15.1) MUTATED DEL PEAK 36(15Q15.1) WILD-TYPE
  CLUS_1                           42                             99
  CLUS_2                           53                            159
  CLUS_3                           29                            132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(15Q15.1) MUTATED       44     34     35     11
  DEL PEAK 36(15Q15.1) WILD-TYPE    132     69    135     54
D65V6, multiclass
        clus
vv       DEL PEAK 36(15Q15.1) MUTATED DEL PEAK 36(15Q15.1) WILD-TYPE
  CLUS_1                           44                            132
  CLUS_2                           34                             69
  CLUS_3                           35                            135
  CLUS_4                           11                             54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(15Q15.1) MUTATED       50     40     34
  DEL PEAK 36(15Q15.1) WILD-TYPE    171    112    111
D65V7, multiclass
        clus
vv       DEL PEAK 36(15Q15.1) MUTATED DEL PEAK 36(15Q15.1) WILD-TYPE
  CLUS_1                           50                            171
  CLUS_2                           40                            112
  CLUS_3                           34                            111
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(15Q15.1) MUTATED       48     36     40
  DEL PEAK 36(15Q15.1) WILD-TYPE    142    106    146
D65V8, multiclass
        clus
vv       DEL PEAK 36(15Q15.1) MUTATED DEL PEAK 36(15Q15.1) WILD-TYPE
  CLUS_1                           48                            142
  CLUS_2                           36                            106
  CLUS_3                           40                            146
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 36(15Q15.1) MUTATED       18     38     28     26      4
  DEL PEAK 36(15Q15.1) WILD-TYPE     54    102     70     90     43
D65V9, multiclass
        clus
vv       DEL PEAK 36(15Q15.1) MUTATED DEL PEAK 36(15Q15.1) WILD-TYPE
  CLUS_1                           18                             54
  CLUS_2                           38                            102
  CLUS_3                           28                             70
  CLUS_4                           26                             90
  CLUS_5                            4                             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(15Q15.1) MUTATED       36     60     18
  DEL PEAK 36(15Q15.1) WILD-TYPE    104    184     71
D65V10, multiclass
        clus
vv       DEL PEAK 36(15Q15.1) MUTATED DEL PEAK 36(15Q15.1) WILD-TYPE
  CLUS_1                           36                            104
  CLUS_2                           60                            184
  CLUS_3                           18                             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(66) Variable = DEL PEAK 37(16Q23.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(16Q23.1) MUTATED       16     40     28     14
  DEL PEAK 37(16Q23.1) WILD-TYPE    139     95    161     29
D66V1, multiclass
        clus
vv       DEL PEAK 37(16Q23.1) MUTATED DEL PEAK 37(16Q23.1) WILD-TYPE
  CLUS_1                           16                            139
  CLUS_2                           40                             95
  CLUS_3                           28                            161
  CLUS_4                           14                             29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 37(16Q23.1) MUTATED        5     17     10     30     27      6
  DEL PEAK 37(16Q23.1) WILD-TYPE     79     62     86     62     51     69
                                vv
clus                             CLUS_7
  DEL PEAK 37(16Q23.1) MUTATED        3
  DEL PEAK 37(16Q23.1) WILD-TYPE     15
D66V2, multiclass
        clus
vv       DEL PEAK 37(16Q23.1) MUTATED DEL PEAK 37(16Q23.1) WILD-TYPE
  CLUS_1                            5                             79
  CLUS_2                           17                             62
  CLUS_3                           10                             86
  CLUS_4                           30                             62
  CLUS_5                           27                             51
  CLUS_6                            6                             69
  CLUS_7                            3                             15
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(16Q23.1) MUTATED        7     12      8     10
  DEL PEAK 37(16Q23.1) WILD-TYPE     46     39     29     55
D66V3, multiclass
        clus
vv       DEL PEAK 37(16Q23.1) MUTATED DEL PEAK 37(16Q23.1) WILD-TYPE
  CLUS_1                            7                             46
  CLUS_2                           12                             39
  CLUS_3                            8                             29
  CLUS_4                           10                             55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(16Q23.1) MUTATED       11     18      8
  DEL PEAK 37(16Q23.1) WILD-TYPE     65     64     40
D66V4, multiclass
        clus
vv       DEL PEAK 37(16Q23.1) MUTATED DEL PEAK 37(16Q23.1) WILD-TYPE
  CLUS_1                           11                             65
  CLUS_2                           18                             64
  CLUS_3                            8                             40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(16Q23.1) MUTATED       19     65     14
  DEL PEAK 37(16Q23.1) WILD-TYPE    122    147    147
D66V5, multiclass
        clus
vv       DEL PEAK 37(16Q23.1) MUTATED DEL PEAK 37(16Q23.1) WILD-TYPE
  CLUS_1                           19                            122
  CLUS_2                           65                            147
  CLUS_3                           14                            147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(16Q23.1) MUTATED       24     31     17     26
  DEL PEAK 37(16Q23.1) WILD-TYPE    152     72    153     39
D66V6, multiclass
        clus
vv       DEL PEAK 37(16Q23.1) MUTATED DEL PEAK 37(16Q23.1) WILD-TYPE
  CLUS_1                           24                            152
  CLUS_2                           31                             72
  CLUS_3                           17                            153
  CLUS_4                           26                             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(16Q23.1) MUTATED       55     23     19
  DEL PEAK 37(16Q23.1) WILD-TYPE    166    129    126
D66V7, multiclass
        clus
vv       DEL PEAK 37(16Q23.1) MUTATED DEL PEAK 37(16Q23.1) WILD-TYPE
  CLUS_1                           55                            166
  CLUS_2                           23                            129
  CLUS_3                           19                            126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(16Q23.1) MUTATED       25     30     42
  DEL PEAK 37(16Q23.1) WILD-TYPE    165    112    144
D66V8, multiclass
        clus
vv       DEL PEAK 37(16Q23.1) MUTATED DEL PEAK 37(16Q23.1) WILD-TYPE
  CLUS_1                           25                            165
  CLUS_2                           30                            112
  CLUS_3                           42                            144
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 37(16Q23.1) MUTATED       12     16     36     15      9
  DEL PEAK 37(16Q23.1) WILD-TYPE     60    124     62    101     38
D66V9, multiclass
        clus
vv       DEL PEAK 37(16Q23.1) MUTATED DEL PEAK 37(16Q23.1) WILD-TYPE
  CLUS_1                           12                             60
  CLUS_2                           16                            124
  CLUS_3                           36                             62
  CLUS_4                           15                            101
  CLUS_5                            9                             38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(16Q23.1) MUTATED       17     61     10
  DEL PEAK 37(16Q23.1) WILD-TYPE    123    183     79
D66V10, multiclass
        clus
vv       DEL PEAK 37(16Q23.1) MUTATED DEL PEAK 37(16Q23.1) WILD-TYPE
  CLUS_1                           17                            123
  CLUS_2                           61                            183
  CLUS_3                           10                             79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(67) Variable = DEL PEAK 38(16Q23.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(16Q23.3) MUTATED       19     42     29     15
  DEL PEAK 38(16Q23.3) WILD-TYPE    136     93    160     28
D67V1, multiclass
        clus
vv       DEL PEAK 38(16Q23.3) MUTATED DEL PEAK 38(16Q23.3) WILD-TYPE
  CLUS_1                           19                            136
  CLUS_2                           42                             93
  CLUS_3                           29                            160
  CLUS_4                           15                             28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 38(16Q23.3) MUTATED        6     16      8     33     27     11
  DEL PEAK 38(16Q23.3) WILD-TYPE     78     63     88     59     51     64
                                vv
clus                             CLUS_7
  DEL PEAK 38(16Q23.3) MUTATED        4
  DEL PEAK 38(16Q23.3) WILD-TYPE     14
D67V2, multiclass
        clus
vv       DEL PEAK 38(16Q23.3) MUTATED DEL PEAK 38(16Q23.3) WILD-TYPE
  CLUS_1                            6                             78
  CLUS_2                           16                             63
  CLUS_3                            8                             88
  CLUS_4                           33                             59
  CLUS_5                           27                             51
  CLUS_6                           11                             64
  CLUS_7                            4                             14
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(16Q23.3) MUTATED        7     16      7     13
  DEL PEAK 38(16Q23.3) WILD-TYPE     46     35     30     52
D67V3, multiclass
        clus
vv       DEL PEAK 38(16Q23.3) MUTATED DEL PEAK 38(16Q23.3) WILD-TYPE
  CLUS_1                            7                             46
  CLUS_2                           16                             35
  CLUS_3                            7                             30
  CLUS_4                           13                             52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(16Q23.3) MUTATED       12     22      9
  DEL PEAK 38(16Q23.3) WILD-TYPE     64     60     39
D67V4, multiclass
        clus
vv       DEL PEAK 38(16Q23.3) MUTATED DEL PEAK 38(16Q23.3) WILD-TYPE
  CLUS_1                           12                             64
  CLUS_2                           22                             60
  CLUS_3                            9                             39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(16Q23.3) MUTATED       23     64     17
  DEL PEAK 38(16Q23.3) WILD-TYPE    118    148    144
D67V5, multiclass
        clus
vv       DEL PEAK 38(16Q23.3) MUTATED DEL PEAK 38(16Q23.3) WILD-TYPE
  CLUS_1                           23                            118
  CLUS_2                           64                            148
  CLUS_3                           17                            144
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(16Q23.3) MUTATED       27     31     19     27
  DEL PEAK 38(16Q23.3) WILD-TYPE    149     72    151     38
D67V6, multiclass
        clus
vv       DEL PEAK 38(16Q23.3) MUTATED DEL PEAK 38(16Q23.3) WILD-TYPE
  CLUS_1                           27                            149
  CLUS_2                           31                             72
  CLUS_3                           19                            151
  CLUS_4                           27                             38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(16Q23.3) MUTATED       57     24     23
  DEL PEAK 38(16Q23.3) WILD-TYPE    164    128    122
D67V7, multiclass
        clus
vv       DEL PEAK 38(16Q23.3) MUTATED DEL PEAK 38(16Q23.3) WILD-TYPE
  CLUS_1                           57                            164
  CLUS_2                           24                            128
  CLUS_3                           23                            122
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(16Q23.3) MUTATED       31     28     45
  DEL PEAK 38(16Q23.3) WILD-TYPE    159    114    141
D67V8, multiclass
        clus
vv       DEL PEAK 38(16Q23.3) MUTATED DEL PEAK 38(16Q23.3) WILD-TYPE
  CLUS_1                           31                            159
  CLUS_2                           28                            114
  CLUS_3                           45                            141
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 38(16Q23.3) MUTATED       14     17     37     17      9
  DEL PEAK 38(16Q23.3) WILD-TYPE     58    123     61     99     38
D67V9, multiclass
        clus
vv       DEL PEAK 38(16Q23.3) MUTATED DEL PEAK 38(16Q23.3) WILD-TYPE
  CLUS_1                           14                             58
  CLUS_2                           17                            123
  CLUS_3                           37                             61
  CLUS_4                           17                             99
  CLUS_5                            9                             38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(16Q23.3) MUTATED       23     62      9
  DEL PEAK 38(16Q23.3) WILD-TYPE    117    182     80
D67V10, multiclass
        clus
vv       DEL PEAK 38(16Q23.3) MUTATED DEL PEAK 38(16Q23.3) WILD-TYPE
  CLUS_1                           23                            117
  CLUS_2                           62                            182
  CLUS_3                            9                             80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(68) Variable = DEL PEAK 39(17P11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(17P11.2) MUTATED       41     37     13      8
  DEL PEAK 39(17P11.2) WILD-TYPE    114     98    176     35
D68V1, multiclass
        clus
vv       DEL PEAK 39(17P11.2) MUTATED DEL PEAK 39(17P11.2) WILD-TYPE
  CLUS_1                           41                            114
  CLUS_2                           37                             98
  CLUS_3                           13                            176
  CLUS_4                            8                             35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 39(17P11.2) MUTATED        9     23     18     25     13      6
  DEL PEAK 39(17P11.2) WILD-TYPE     75     56     78     67     65     69
                                vv
clus                             CLUS_7
  DEL PEAK 39(17P11.2) MUTATED        5
  DEL PEAK 39(17P11.2) WILD-TYPE     13
D68V2, multiclass
        clus
vv       DEL PEAK 39(17P11.2) MUTATED DEL PEAK 39(17P11.2) WILD-TYPE
  CLUS_1                            9                             75
  CLUS_2                           23                             56
  CLUS_3                           18                             78
  CLUS_4                           25                             67
  CLUS_5                           13                             65
  CLUS_6                            6                             69
  CLUS_7                            5                             13
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(17P11.2) MUTATED       11     10      7     10
  DEL PEAK 39(17P11.2) WILD-TYPE     42     41     30     55
D68V3, multiclass
        clus
vv       DEL PEAK 39(17P11.2) MUTATED DEL PEAK 39(17P11.2) WILD-TYPE
  CLUS_1                           11                             42
  CLUS_2                           10                             41
  CLUS_3                            7                             30
  CLUS_4                           10                             55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(17P11.2) MUTATED       14     16      8
  DEL PEAK 39(17P11.2) WILD-TYPE     62     66     40
D68V4, multiclass
        clus
vv       DEL PEAK 39(17P11.2) MUTATED DEL PEAK 39(17P11.2) WILD-TYPE
  CLUS_1                           14                             62
  CLUS_2                           16                             66
  CLUS_3                            8                             40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(17P11.2) MUTATED       30     43     24
  DEL PEAK 39(17P11.2) WILD-TYPE    111    169    137
D68V5, multiclass
        clus
vv       DEL PEAK 39(17P11.2) MUTATED DEL PEAK 39(17P11.2) WILD-TYPE
  CLUS_1                           30                            111
  CLUS_2                           43                            169
  CLUS_3                           24                            137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(17P11.2) MUTATED       33     28     26     10
  DEL PEAK 39(17P11.2) WILD-TYPE    143     75    144     55
D68V6, multiclass
        clus
vv       DEL PEAK 39(17P11.2) MUTATED DEL PEAK 39(17P11.2) WILD-TYPE
  CLUS_1                           33                            143
  CLUS_2                           28                             75
  CLUS_3                           26                            144
  CLUS_4                           10                             55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(17P11.2) MUTATED       47     25     26
  DEL PEAK 39(17P11.2) WILD-TYPE    174    127    119
D68V7, multiclass
        clus
vv       DEL PEAK 39(17P11.2) MUTATED DEL PEAK 39(17P11.2) WILD-TYPE
  CLUS_1                           47                            174
  CLUS_2                           25                            127
  CLUS_3                           26                            119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(17P11.2) MUTATED       33     35     30
  DEL PEAK 39(17P11.2) WILD-TYPE    157    107    156
D68V8, multiclass
        clus
vv       DEL PEAK 39(17P11.2) MUTATED DEL PEAK 39(17P11.2) WILD-TYPE
  CLUS_1                           33                            157
  CLUS_2                           35                            107
  CLUS_3                           30                            156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 39(17P11.2) MUTATED       19     24     28     16      6
  DEL PEAK 39(17P11.2) WILD-TYPE     53    116     70    100     41
D68V9, multiclass
        clus
vv       DEL PEAK 39(17P11.2) MUTATED DEL PEAK 39(17P11.2) WILD-TYPE
  CLUS_1                           19                             53
  CLUS_2                           24                            116
  CLUS_3                           28                             70
  CLUS_4                           16                            100
  CLUS_5                            6                             41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(17P11.2) MUTATED       28     49     16
  DEL PEAK 39(17P11.2) WILD-TYPE    112    195     73
D68V10, multiclass
        clus
vv       DEL PEAK 39(17P11.2) MUTATED DEL PEAK 39(17P11.2) WILD-TYPE
  CLUS_1                           28                            112
  CLUS_2                           49                            195
  CLUS_3                           16                             73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(69) Variable = DEL PEAK 40(17Q25.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(17Q25.3) MUTATED       21     25     21      4
  DEL PEAK 40(17Q25.3) WILD-TYPE    134    110    168     39
D69V1, multiclass
        clus
vv       DEL PEAK 40(17Q25.3) MUTATED DEL PEAK 40(17Q25.3) WILD-TYPE
  CLUS_1                           21                            134
  CLUS_2                           25                            110
  CLUS_3                           21                            168
  CLUS_4                            4                             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 40(17Q25.3) MUTATED        3      8     10     22     19      4
  DEL PEAK 40(17Q25.3) WILD-TYPE     81     71     86     70     59     71
                                vv
clus                             CLUS_7
  DEL PEAK 40(17Q25.3) MUTATED        5
  DEL PEAK 40(17Q25.3) WILD-TYPE     13
D69V2, multiclass
        clus
vv       DEL PEAK 40(17Q25.3) MUTATED DEL PEAK 40(17Q25.3) WILD-TYPE
  CLUS_1                            3                             81
  CLUS_2                            8                             71
  CLUS_3                           10                             86
  CLUS_4                           22                             70
  CLUS_5                           19                             59
  CLUS_6                            4                             71
  CLUS_7                            5                             13
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(17Q25.3) MUTATED        5      8      2      5
  DEL PEAK 40(17Q25.3) WILD-TYPE     48     43     35     60
D69V3, multiclass
        clus
vv       DEL PEAK 40(17Q25.3) MUTATED DEL PEAK 40(17Q25.3) WILD-TYPE
  CLUS_1                            5                             48
  CLUS_2                            8                             43
  CLUS_3                            2                             35
  CLUS_4                            5                             60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(17Q25.3) MUTATED        8      9      3
  DEL PEAK 40(17Q25.3) WILD-TYPE     68     73     45
D69V4, multiclass
        clus
vv       DEL PEAK 40(17Q25.3) MUTATED DEL PEAK 40(17Q25.3) WILD-TYPE
  CLUS_1                            8                             68
  CLUS_2                            9                             73
  CLUS_3                            3                             45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(17Q25.3) MUTATED       16     39     14
  DEL PEAK 40(17Q25.3) WILD-TYPE    125    173    147
D69V5, multiclass
        clus
vv       DEL PEAK 40(17Q25.3) MUTATED DEL PEAK 40(17Q25.3) WILD-TYPE
  CLUS_1                           16                            125
  CLUS_2                           39                            173
  CLUS_3                           14                            147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(17Q25.3) MUTATED       18     12     24     15
  DEL PEAK 40(17Q25.3) WILD-TYPE    158     91    146     50
D69V6, multiclass
        clus
vv       DEL PEAK 40(17Q25.3) MUTATED DEL PEAK 40(17Q25.3) WILD-TYPE
  CLUS_1                           18                            158
  CLUS_2                           12                             91
  CLUS_3                           24                            146
  CLUS_4                           15                             50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(17Q25.3) MUTATED       42     15     13
  DEL PEAK 40(17Q25.3) WILD-TYPE    179    137    132
D69V7, multiclass
        clus
vv       DEL PEAK 40(17Q25.3) MUTATED DEL PEAK 40(17Q25.3) WILD-TYPE
  CLUS_1                           42                            179
  CLUS_2                           15                            137
  CLUS_3                           13                            132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(17Q25.3) MUTATED       17     25     28
  DEL PEAK 40(17Q25.3) WILD-TYPE    173    117    158
D69V8, multiclass
        clus
vv       DEL PEAK 40(17Q25.3) MUTATED DEL PEAK 40(17Q25.3) WILD-TYPE
  CLUS_1                           17                            173
  CLUS_2                           25                            117
  CLUS_3                           28                            158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 40(17Q25.3) MUTATED        8     16     21     12     10
  DEL PEAK 40(17Q25.3) WILD-TYPE     64    124     77    104     37
D69V9, multiclass
        clus
vv       DEL PEAK 40(17Q25.3) MUTATED DEL PEAK 40(17Q25.3) WILD-TYPE
  CLUS_1                            8                             64
  CLUS_2                           16                            124
  CLUS_3                           21                             77
  CLUS_4                           12                            104
  CLUS_5                           10                             37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(17Q25.3) MUTATED       14     47      6
  DEL PEAK 40(17Q25.3) WILD-TYPE    126    197     83
D69V10, multiclass
        clus
vv       DEL PEAK 40(17Q25.3) MUTATED DEL PEAK 40(17Q25.3) WILD-TYPE
  CLUS_1                           14                            126
  CLUS_2                           47                            197
  CLUS_3                            6                             83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(70) Variable = DEL PEAK 41(18Q21.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 41(18Q21.2) MUTATED      122     80     44     22
  DEL PEAK 41(18Q21.2) WILD-TYPE     33     55    145     21
D70V1, multiclass
        clus
vv       DEL PEAK 41(18Q21.2) MUTATED DEL PEAK 41(18Q21.2) WILD-TYPE
  CLUS_1                          122                             33
  CLUS_2                           80                             55
  CLUS_3                           44                            145
  CLUS_4                           22                             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 41(18Q21.2) MUTATED       43     56     65     63      5     26
  DEL PEAK 41(18Q21.2) WILD-TYPE     41     23     31     29     73     49
                                vv
clus                             CLUS_7
  DEL PEAK 41(18Q21.2) MUTATED       10
  DEL PEAK 41(18Q21.2) WILD-TYPE      8
D70V2, multiclass
        clus
vv       DEL PEAK 41(18Q21.2) MUTATED DEL PEAK 41(18Q21.2) WILD-TYPE
  CLUS_1                           43                             41
  CLUS_2                           56                             23
  CLUS_3                           65                             31
  CLUS_4                           63                             29
  CLUS_5                            5                             73
  CLUS_6                           26                             49
  CLUS_7                           10                              8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 41(18Q21.2) MUTATED       32     29     20     35
  DEL PEAK 41(18Q21.2) WILD-TYPE     21     22     17     30
D70V3, multiclass
        clus
vv       DEL PEAK 41(18Q21.2) MUTATED DEL PEAK 41(18Q21.2) WILD-TYPE
  CLUS_1                           32                             21
  CLUS_2                           29                             22
  CLUS_3                           20                             17
  CLUS_4                           35                             30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(18Q21.2) MUTATED       46     47     23
  DEL PEAK 41(18Q21.2) WILD-TYPE     30     35     25
D70V4, multiclass
        clus
vv       DEL PEAK 41(18Q21.2) MUTATED DEL PEAK 41(18Q21.2) WILD-TYPE
  CLUS_1                           46                             30
  CLUS_2                           47                             35
  CLUS_3                           23                             25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(18Q21.2) MUTATED       86     95     83
  DEL PEAK 41(18Q21.2) WILD-TYPE     55    117     78
D70V5, multiclass
        clus
vv       DEL PEAK 41(18Q21.2) MUTATED DEL PEAK 41(18Q21.2) WILD-TYPE
  CLUS_1                           86                             55
  CLUS_2                           95                            117
  CLUS_3                           83                             78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 41(18Q21.2) MUTATED      103     68     86      7
  DEL PEAK 41(18Q21.2) WILD-TYPE     73     35     84     58
D70V6, multiclass
        clus
vv       DEL PEAK 41(18Q21.2) MUTATED DEL PEAK 41(18Q21.2) WILD-TYPE
  CLUS_1                          103                             73
  CLUS_2                           68                             35
  CLUS_3                           86                             84
  CLUS_4                            7                             58
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(18Q21.2) MUTATED      102     77     87
  DEL PEAK 41(18Q21.2) WILD-TYPE    119     75     58
D70V7, multiclass
        clus
vv       DEL PEAK 41(18Q21.2) MUTATED DEL PEAK 41(18Q21.2) WILD-TYPE
  CLUS_1                          102                            119
  CLUS_2                           77                             75
  CLUS_3                           87                             58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(18Q21.2) MUTATED      111     86     69
  DEL PEAK 41(18Q21.2) WILD-TYPE     79     56    117
D70V8, multiclass
        clus
vv       DEL PEAK 41(18Q21.2) MUTATED DEL PEAK 41(18Q21.2) WILD-TYPE
  CLUS_1                          111                             79
  CLUS_2                           86                             56
  CLUS_3                           69                            117
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 41(18Q21.2) MUTATED       39     76     53     69      9
  DEL PEAK 41(18Q21.2) WILD-TYPE     33     64     45     47     38
D70V9, multiclass
        clus
vv       DEL PEAK 41(18Q21.2) MUTATED DEL PEAK 41(18Q21.2) WILD-TYPE
  CLUS_1                           39                             33
  CLUS_2                           76                             64
  CLUS_3                           53                             45
  CLUS_4                           69                             47
  CLUS_5                            9                             38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(18Q21.2) MUTATED       82    115     49
  DEL PEAK 41(18Q21.2) WILD-TYPE     58    129     40
D70V10, multiclass
        clus
vv       DEL PEAK 41(18Q21.2) MUTATED DEL PEAK 41(18Q21.2) WILD-TYPE
  CLUS_1                           82                             58
  CLUS_2                          115                            129
  CLUS_3                           49                             40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(71) Variable = DEL PEAK 42(18Q23) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 42(18Q23) MUTATED      128     89     48     23
  DEL PEAK 42(18Q23) WILD-TYPE     27     46    141     20
D71V1, multiclass
        clus
vv       DEL PEAK 42(18Q23) MUTATED DEL PEAK 42(18Q23) WILD-TYPE
  CLUS_1                        128                           27
  CLUS_2                         89                           46
  CLUS_3                         48                          141
  CLUS_4                         23                           20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 42(18Q23) MUTATED       45     57     71     70      9     25     11
  DEL PEAK 42(18Q23) WILD-TYPE     39     22     25     22     69     50      7
D71V2, multiclass
        clus
vv       DEL PEAK 42(18Q23) MUTATED DEL PEAK 42(18Q23) WILD-TYPE
  CLUS_1                         45                           39
  CLUS_2                         57                           22
  CLUS_3                         71                           25
  CLUS_4                         70                           22
  CLUS_5                          9                           69
  CLUS_6                         25                           50
  CLUS_7                         11                            7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 42(18Q23) MUTATED       37     31     18     40
  DEL PEAK 42(18Q23) WILD-TYPE     16     20     19     25
D71V3, multiclass
        clus
vv       DEL PEAK 42(18Q23) MUTATED DEL PEAK 42(18Q23) WILD-TYPE
  CLUS_1                         37                           16
  CLUS_2                         31                           20
  CLUS_3                         18                           19
  CLUS_4                         40                           25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(18Q23) MUTATED       51     50     25
  DEL PEAK 42(18Q23) WILD-TYPE     25     32     23
D71V4, multiclass
        clus
vv       DEL PEAK 42(18Q23) MUTATED DEL PEAK 42(18Q23) WILD-TYPE
  CLUS_1                         51                           25
  CLUS_2                         50                           32
  CLUS_3                         25                           23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(18Q23) MUTATED       92    102     90
  DEL PEAK 42(18Q23) WILD-TYPE     49    110     71
D71V5, multiclass
        clus
vv       DEL PEAK 42(18Q23) MUTATED DEL PEAK 42(18Q23) WILD-TYPE
  CLUS_1                         92                           49
  CLUS_2                        102                          110
  CLUS_3                         90                           71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 42(18Q23) MUTATED      110     70     95      9
  DEL PEAK 42(18Q23) WILD-TYPE     66     33     75     56
D71V6, multiclass
        clus
vv       DEL PEAK 42(18Q23) MUTATED DEL PEAK 42(18Q23) WILD-TYPE
  CLUS_1                        110                           66
  CLUS_2                         70                           33
  CLUS_3                         95                           75
  CLUS_4                          9                           56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(18Q23) MUTATED      111     84     91
  DEL PEAK 42(18Q23) WILD-TYPE    110     68     54
D71V7, multiclass
        clus
vv       DEL PEAK 42(18Q23) MUTATED DEL PEAK 42(18Q23) WILD-TYPE
  CLUS_1                        111                          110
  CLUS_2                         84                           68
  CLUS_3                         91                           54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(18Q23) MUTATED      119     92     75
  DEL PEAK 42(18Q23) WILD-TYPE     71     50    111
D71V8, multiclass
        clus
vv       DEL PEAK 42(18Q23) MUTATED DEL PEAK 42(18Q23) WILD-TYPE
  CLUS_1                        119                           71
  CLUS_2                         92                           50
  CLUS_3                         75                          111
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 42(18Q23) MUTATED       45     84     57     68      9
  DEL PEAK 42(18Q23) WILD-TYPE     27     56     41     48     38
D71V9, multiclass
        clus
vv       DEL PEAK 42(18Q23) MUTATED DEL PEAK 42(18Q23) WILD-TYPE
  CLUS_1                         45                           27
  CLUS_2                         84                           56
  CLUS_3                         57                           41
  CLUS_4                         68                           48
  CLUS_5                          9                           38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(18Q23) MUTATED       89    121     53
  DEL PEAK 42(18Q23) WILD-TYPE     51    123     36
D71V10, multiclass
        clus
vv       DEL PEAK 42(18Q23) MUTATED DEL PEAK 42(18Q23) WILD-TYPE
  CLUS_1                         89                           51
  CLUS_2                        121                          123
  CLUS_3                         53                           36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(72) Variable = DEL PEAK 43(19P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 43(19P13.3) MUTATED       77     55     27     16
  DEL PEAK 43(19P13.3) WILD-TYPE     78     80    162     27
D72V1, multiclass
        clus
vv       DEL PEAK 43(19P13.3) MUTATED DEL PEAK 43(19P13.3) WILD-TYPE
  CLUS_1                           77                             78
  CLUS_2                           55                             80
  CLUS_3                           27                            162
  CLUS_4                           16                             27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 43(19P13.3) MUTATED       17     28     49     41     14     21
  DEL PEAK 43(19P13.3) WILD-TYPE     67     51     47     51     64     54
                                vv
clus                             CLUS_7
  DEL PEAK 43(19P13.3) MUTATED        5
  DEL PEAK 43(19P13.3) WILD-TYPE     13
D72V2, multiclass
        clus
vv       DEL PEAK 43(19P13.3) MUTATED DEL PEAK 43(19P13.3) WILD-TYPE
  CLUS_1                           17                             67
  CLUS_2                           28                             51
  CLUS_3                           49                             47
  CLUS_4                           41                             51
  CLUS_5                           14                             64
  CLUS_6                           21                             54
  CLUS_7                            5                             13
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 43(19P13.3) MUTATED       20     19     19     21
  DEL PEAK 43(19P13.3) WILD-TYPE     33     32     18     44
D72V3, multiclass
        clus
vv       DEL PEAK 43(19P13.3) MUTATED DEL PEAK 43(19P13.3) WILD-TYPE
  CLUS_1                           20                             33
  CLUS_2                           19                             32
  CLUS_3                           19                             18
  CLUS_4                           21                             44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(19P13.3) MUTATED       34     28     17
  DEL PEAK 43(19P13.3) WILD-TYPE     42     54     31
D72V4, multiclass
        clus
vv       DEL PEAK 43(19P13.3) MUTATED DEL PEAK 43(19P13.3) WILD-TYPE
  CLUS_1                           34                             42
  CLUS_2                           28                             54
  CLUS_3                           17                             31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(19P13.3) MUTATED       61     63     49
  DEL PEAK 43(19P13.3) WILD-TYPE     80    149    112
D72V5, multiclass
        clus
vv       DEL PEAK 43(19P13.3) MUTATED DEL PEAK 43(19P13.3) WILD-TYPE
  CLUS_1                           61                             80
  CLUS_2                           63                            149
  CLUS_3                           49                            112
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 43(19P13.3) MUTATED       71     39     54      9
  DEL PEAK 43(19P13.3) WILD-TYPE    105     64    116     56
D72V6, multiclass
        clus
vv       DEL PEAK 43(19P13.3) MUTATED DEL PEAK 43(19P13.3) WILD-TYPE
  CLUS_1                           71                            105
  CLUS_2                           39                             64
  CLUS_3                           54                            116
  CLUS_4                            9                             56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(19P13.3) MUTATED       69     45     58
  DEL PEAK 43(19P13.3) WILD-TYPE    152    107     87
D72V7, multiclass
        clus
vv       DEL PEAK 43(19P13.3) MUTATED DEL PEAK 43(19P13.3) WILD-TYPE
  CLUS_1                           69                            152
  CLUS_2                           45                            107
  CLUS_3                           58                             87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(19P13.3) MUTATED       72     59     41
  DEL PEAK 43(19P13.3) WILD-TYPE    118     83    145
D72V8, multiclass
        clus
vv       DEL PEAK 43(19P13.3) MUTATED DEL PEAK 43(19P13.3) WILD-TYPE
  CLUS_1                           72                            118
  CLUS_2                           59                             83
  CLUS_3                           41                            145
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 43(19P13.3) MUTATED       28     51     24     51      3
  DEL PEAK 43(19P13.3) WILD-TYPE     44     89     74     65     44
D72V9, multiclass
        clus
vv       DEL PEAK 43(19P13.3) MUTATED DEL PEAK 43(19P13.3) WILD-TYPE
  CLUS_1                           28                             44
  CLUS_2                           51                             89
  CLUS_3                           24                             74
  CLUS_4                           51                             65
  CLUS_5                            3                             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(19P13.3) MUTATED       52     70     35
  DEL PEAK 43(19P13.3) WILD-TYPE     88    174     54
D72V10, multiclass
        clus
vv       DEL PEAK 43(19P13.3) MUTATED DEL PEAK 43(19P13.3) WILD-TYPE
  CLUS_1                           52                             88
  CLUS_2                           70                            174
  CLUS_3                           35                             54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(73) Variable = DEL PEAK 44(19Q13.43) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 44(19Q13.43) MUTATED       45     38      9      5
  DEL PEAK 44(19Q13.43) WILD-TYPE    110     97    180     38
D73V1, multiclass
        clus
vv       DEL PEAK 44(19Q13.43) MUTATED DEL PEAK 44(19Q13.43) WILD-TYPE
  CLUS_1                            45                             110
  CLUS_2                            38                              97
  CLUS_3                             9                             180
  CLUS_4                             5                              38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 44(19Q13.43) MUTATED        7     18     27     30      5      6
  DEL PEAK 44(19Q13.43) WILD-TYPE     77     61     69     62     73     69
                                 vv
clus                              CLUS_7
  DEL PEAK 44(19Q13.43) MUTATED        4
  DEL PEAK 44(19Q13.43) WILD-TYPE     14
D73V2, multiclass
        clus
vv       DEL PEAK 44(19Q13.43) MUTATED DEL PEAK 44(19Q13.43) WILD-TYPE
  CLUS_1                             7                              77
  CLUS_2                            18                              61
  CLUS_3                            27                              69
  CLUS_4                            30                              62
  CLUS_5                             5                              73
  CLUS_6                             6                              69
  CLUS_7                             4                              14
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 44(19Q13.43) MUTATED       11     13     11     10
  DEL PEAK 44(19Q13.43) WILD-TYPE     42     38     26     55
D73V3, multiclass
        clus
vv       DEL PEAK 44(19Q13.43) MUTATED DEL PEAK 44(19Q13.43) WILD-TYPE
  CLUS_1                            11                              42
  CLUS_2                            13                              38
  CLUS_3                            11                              26
  CLUS_4                            10                              55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(19Q13.43) MUTATED       16     16     13
  DEL PEAK 44(19Q13.43) WILD-TYPE     60     66     35
D73V4, multiclass
        clus
vv       DEL PEAK 44(19Q13.43) MUTATED DEL PEAK 44(19Q13.43) WILD-TYPE
  CLUS_1                            16                              60
  CLUS_2                            16                              66
  CLUS_3                            13                              35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(19Q13.43) MUTATED       26     43     26
  DEL PEAK 44(19Q13.43) WILD-TYPE    115    169    135
D73V5, multiclass
        clus
vv       DEL PEAK 44(19Q13.43) MUTATED DEL PEAK 44(19Q13.43) WILD-TYPE
  CLUS_1                            26                             115
  CLUS_2                            43                             169
  CLUS_3                            26                             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 44(19Q13.43) MUTATED       34     34     23      4
  DEL PEAK 44(19Q13.43) WILD-TYPE    142     69    147     61
D73V6, multiclass
        clus
vv       DEL PEAK 44(19Q13.43) MUTATED DEL PEAK 44(19Q13.43) WILD-TYPE
  CLUS_1                            34                             142
  CLUS_2                            34                              69
  CLUS_3                            23                             147
  CLUS_4                             4                              61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(19Q13.43) MUTATED       45     23     27
  DEL PEAK 44(19Q13.43) WILD-TYPE    176    129    118
D73V7, multiclass
        clus
vv       DEL PEAK 44(19Q13.43) MUTATED DEL PEAK 44(19Q13.43) WILD-TYPE
  CLUS_1                            45                             176
  CLUS_2                            23                             129
  CLUS_3                            27                             118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(19Q13.43) MUTATED       37     33     25
  DEL PEAK 44(19Q13.43) WILD-TYPE    153    109    161
D73V8, multiclass
        clus
vv       DEL PEAK 44(19Q13.43) MUTATED DEL PEAK 44(19Q13.43) WILD-TYPE
  CLUS_1                            37                             153
  CLUS_2                            33                             109
  CLUS_3                            25                             161
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 44(19Q13.43) MUTATED        8     24     21     26      6
  DEL PEAK 44(19Q13.43) WILD-TYPE     64    116     77     90     41
D73V9, multiclass
        clus
vv       DEL PEAK 44(19Q13.43) MUTATED DEL PEAK 44(19Q13.43) WILD-TYPE
  CLUS_1                             8                              64
  CLUS_2                            24                             116
  CLUS_3                            21                              77
  CLUS_4                            26                              90
  CLUS_5                             6                              41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(19Q13.43) MUTATED       24     42     19
  DEL PEAK 44(19Q13.43) WILD-TYPE    116    202     70
D73V10, multiclass
        clus
vv       DEL PEAK 44(19Q13.43) MUTATED DEL PEAK 44(19Q13.43) WILD-TYPE
  CLUS_1                            24                             116
  CLUS_2                            42                             202
  CLUS_3                            19                              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(74) Variable = DEL PEAK 45(21Q22.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 45(21Q22.3) MUTATED       88     73     28     19
  DEL PEAK 45(21Q22.3) WILD-TYPE     67     62    161     24
D74V1, multiclass
        clus
vv       DEL PEAK 45(21Q22.3) MUTATED DEL PEAK 45(21Q22.3) WILD-TYPE
  CLUS_1                           88                             67
  CLUS_2                           73                             62
  CLUS_3                           28                            161
  CLUS_4                           19                             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 45(21Q22.3) MUTATED       24     35     54     53     12     19
  DEL PEAK 45(21Q22.3) WILD-TYPE     60     44     42     39     66     56
                                vv
clus                             CLUS_7
  DEL PEAK 45(21Q22.3) MUTATED       11
  DEL PEAK 45(21Q22.3) WILD-TYPE      7
D74V2, multiclass
        clus
vv       DEL PEAK 45(21Q22.3) MUTATED DEL PEAK 45(21Q22.3) WILD-TYPE
  CLUS_1                           24                             60
  CLUS_2                           35                             44
  CLUS_3                           54                             42
  CLUS_4                           53                             39
  CLUS_5                           12                             66
  CLUS_6                           19                             56
  CLUS_7                           11                              7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 45(21Q22.3) MUTATED       23     19     16     33
  DEL PEAK 45(21Q22.3) WILD-TYPE     30     32     21     32
D74V3, multiclass
        clus
vv       DEL PEAK 45(21Q22.3) MUTATED DEL PEAK 45(21Q22.3) WILD-TYPE
  CLUS_1                           23                             30
  CLUS_2                           19                             32
  CLUS_3                           16                             21
  CLUS_4                           33                             32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(21Q22.3) MUTATED       32     39     20
  DEL PEAK 45(21Q22.3) WILD-TYPE     44     43     28
D74V4, multiclass
        clus
vv       DEL PEAK 45(21Q22.3) MUTATED DEL PEAK 45(21Q22.3) WILD-TYPE
  CLUS_1                           32                             44
  CLUS_2                           39                             43
  CLUS_3                           20                             28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(21Q22.3) MUTATED       71     72     62
  DEL PEAK 45(21Q22.3) WILD-TYPE     70    140     99
D74V5, multiclass
        clus
vv       DEL PEAK 45(21Q22.3) MUTATED DEL PEAK 45(21Q22.3) WILD-TYPE
  CLUS_1                           71                             70
  CLUS_2                           72                            140
  CLUS_3                           62                             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 45(21Q22.3) MUTATED       89     46     59     11
  DEL PEAK 45(21Q22.3) WILD-TYPE     87     57    111     54
D74V6, multiclass
        clus
vv       DEL PEAK 45(21Q22.3) MUTATED DEL PEAK 45(21Q22.3) WILD-TYPE
  CLUS_1                           89                             87
  CLUS_2                           46                             57
  CLUS_3                           59                            111
  CLUS_4                           11                             54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(21Q22.3) MUTATED       82     60     65
  DEL PEAK 45(21Q22.3) WILD-TYPE    139     92     80
D74V7, multiclass
        clus
vv       DEL PEAK 45(21Q22.3) MUTATED DEL PEAK 45(21Q22.3) WILD-TYPE
  CLUS_1                           82                            139
  CLUS_2                           60                             92
  CLUS_3                           65                             80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(21Q22.3) MUTATED       88     68     51
  DEL PEAK 45(21Q22.3) WILD-TYPE    102     74    135
D74V8, multiclass
        clus
vv       DEL PEAK 45(21Q22.3) MUTATED DEL PEAK 45(21Q22.3) WILD-TYPE
  CLUS_1                           88                            102
  CLUS_2                           68                             74
  CLUS_3                           51                            135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 45(21Q22.3) MUTATED       39     60     39     49      6
  DEL PEAK 45(21Q22.3) WILD-TYPE     33     80     59     67     41
D74V9, multiclass
        clus
vv       DEL PEAK 45(21Q22.3) MUTATED DEL PEAK 45(21Q22.3) WILD-TYPE
  CLUS_1                           39                             33
  CLUS_2                           60                             80
  CLUS_3                           39                             59
  CLUS_4                           49                             67
  CLUS_5                            6                             41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(21Q22.3) MUTATED       65     89     39
  DEL PEAK 45(21Q22.3) WILD-TYPE     75    155     50
D74V10, multiclass
        clus
vv       DEL PEAK 45(21Q22.3) MUTATED DEL PEAK 45(21Q22.3) WILD-TYPE
  CLUS_1                           65                             75
  CLUS_2                           89                            155
  CLUS_3                           39                             50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(75) Variable = DEL PEAK 46(XP22.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 46(XP22.2) MUTATED       60     62     26      9
  DEL PEAK 46(XP22.2) WILD-TYPE     95     73    163     34
D75V1, multiclass
        clus
vv       DEL PEAK 46(XP22.2) MUTATED DEL PEAK 46(XP22.2) WILD-TYPE
  CLUS_1                          60                            95
  CLUS_2                          62                            73
  CLUS_3                          26                           163
  CLUS_4                           9                            34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 46(XP22.2) MUTATED       14     25     35     50     17      9
  DEL PEAK 46(XP22.2) WILD-TYPE     70     54     61     42     61     66
                               vv
clus                            CLUS_7
  DEL PEAK 46(XP22.2) MUTATED        7
  DEL PEAK 46(XP22.2) WILD-TYPE     11
D75V2, multiclass
        clus
vv       DEL PEAK 46(XP22.2) MUTATED DEL PEAK 46(XP22.2) WILD-TYPE
  CLUS_1                          14                            70
  CLUS_2                          25                            54
  CLUS_3                          35                            61
  CLUS_4                          50                            42
  CLUS_5                          17                            61
  CLUS_6                           9                            66
  CLUS_7                           7                            11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 46(XP22.2) MUTATED       14     21     10     24
  DEL PEAK 46(XP22.2) WILD-TYPE     39     30     27     41
D75V3, multiclass
        clus
vv       DEL PEAK 46(XP22.2) MUTATED DEL PEAK 46(XP22.2) WILD-TYPE
  CLUS_1                          14                            39
  CLUS_2                          21                            30
  CLUS_3                          10                            27
  CLUS_4                          24                            41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 46(XP22.2) MUTATED       19     39     11
  DEL PEAK 46(XP22.2) WILD-TYPE     57     43     37
D75V4, multiclass
        clus
vv       DEL PEAK 46(XP22.2) MUTATED DEL PEAK 46(XP22.2) WILD-TYPE
  CLUS_1                          19                            57
  CLUS_2                          39                            43
  CLUS_3                          11                            37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 46(XP22.2) MUTATED       48     71     37
  DEL PEAK 46(XP22.2) WILD-TYPE     93    141    124
D75V5, multiclass
        clus
vv       DEL PEAK 46(XP22.2) MUTATED DEL PEAK 46(XP22.2) WILD-TYPE
  CLUS_1                          48                            93
  CLUS_2                          71                           141
  CLUS_3                          37                           124
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 46(XP22.2) MUTATED       60     40     38     18
  DEL PEAK 46(XP22.2) WILD-TYPE    116     63    132     47
D75V6, multiclass
        clus
vv       DEL PEAK 46(XP22.2) MUTATED DEL PEAK 46(XP22.2) WILD-TYPE
  CLUS_1                          60                           116
  CLUS_2                          40                            63
  CLUS_3                          38                           132
  CLUS_4                          18                            47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 46(XP22.2) MUTATED       79     31     44
  DEL PEAK 46(XP22.2) WILD-TYPE    142    121    101
D75V7, multiclass
        clus
vv       DEL PEAK 46(XP22.2) MUTATED DEL PEAK 46(XP22.2) WILD-TYPE
  CLUS_1                          79                           142
  CLUS_2                          31                           121
  CLUS_3                          44                           101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 46(XP22.2) MUTATED       60     48     46
  DEL PEAK 46(XP22.2) WILD-TYPE    130     94    140
D75V8, multiclass
        clus
vv       DEL PEAK 46(XP22.2) MUTATED DEL PEAK 46(XP22.2) WILD-TYPE
  CLUS_1                          60                           130
  CLUS_2                          48                            94
  CLUS_3                          46                           140
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 46(XP22.2) MUTATED       23     38     41     30      6
  DEL PEAK 46(XP22.2) WILD-TYPE     49    102     57     86     41
D75V9, multiclass
        clus
vv       DEL PEAK 46(XP22.2) MUTATED DEL PEAK 46(XP22.2) WILD-TYPE
  CLUS_1                          23                            49
  CLUS_2                          38                           102
  CLUS_3                          41                            57
  CLUS_4                          30                            86
  CLUS_5                           6                            41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 46(XP22.2) MUTATED       47     69     22
  DEL PEAK 46(XP22.2) WILD-TYPE     93    175     67
D75V10, multiclass
        clus
vv       DEL PEAK 46(XP22.2) MUTATED DEL PEAK 46(XP22.2) WILD-TYPE
  CLUS_1                          47                            93
  CLUS_2                          69                           175
  CLUS_3                          22                            67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(76) Variable = DEL PEAK 47(XP21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 47(XP21.3) MUTATED       66     59     27      7
  DEL PEAK 47(XP21.3) WILD-TYPE     89     76    162     36
D76V1, multiclass
        clus
vv       DEL PEAK 47(XP21.3) MUTATED DEL PEAK 47(XP21.3) WILD-TYPE
  CLUS_1                          66                            89
  CLUS_2                          59                            76
  CLUS_3                          27                           162
  CLUS_4                           7                            36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 47(XP21.3) MUTATED       16     26     38     45     15     12
  DEL PEAK 47(XP21.3) WILD-TYPE     68     53     58     47     63     63
                               vv
clus                            CLUS_7
  DEL PEAK 47(XP21.3) MUTATED        7
  DEL PEAK 47(XP21.3) WILD-TYPE     11
D76V2, multiclass
        clus
vv       DEL PEAK 47(XP21.3) MUTATED DEL PEAK 47(XP21.3) WILD-TYPE
  CLUS_1                          16                            68
  CLUS_2                          26                            53
  CLUS_3                          38                            58
  CLUS_4                          45                            47
  CLUS_5                          15                            63
  CLUS_6                          12                            63
  CLUS_7                           7                            11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 47(XP21.3) MUTATED       16     16     12     27
  DEL PEAK 47(XP21.3) WILD-TYPE     37     35     25     38
D76V3, multiclass
        clus
vv       DEL PEAK 47(XP21.3) MUTATED DEL PEAK 47(XP21.3) WILD-TYPE
  CLUS_1                          16                            37
  CLUS_2                          16                            35
  CLUS_3                          12                            25
  CLUS_4                          27                            38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 47(XP21.3) MUTATED       23     36     12
  DEL PEAK 47(XP21.3) WILD-TYPE     53     46     36
D76V4, multiclass
        clus
vv       DEL PEAK 47(XP21.3) MUTATED DEL PEAK 47(XP21.3) WILD-TYPE
  CLUS_1                          23                            53
  CLUS_2                          36                            46
  CLUS_3                          12                            36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 47(XP21.3) MUTATED       47     66     44
  DEL PEAK 47(XP21.3) WILD-TYPE     94    146    117
D76V5, multiclass
        clus
vv       DEL PEAK 47(XP21.3) MUTATED DEL PEAK 47(XP21.3) WILD-TYPE
  CLUS_1                          47                            94
  CLUS_2                          66                           146
  CLUS_3                          44                           117
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 47(XP21.3) MUTATED       62     39     40     16
  DEL PEAK 47(XP21.3) WILD-TYPE    114     64    130     49
D76V6, multiclass
        clus
vv       DEL PEAK 47(XP21.3) MUTATED DEL PEAK 47(XP21.3) WILD-TYPE
  CLUS_1                          62                           114
  CLUS_2                          39                            64
  CLUS_3                          40                           130
  CLUS_4                          16                            49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 47(XP21.3) MUTATED       74     36     46
  DEL PEAK 47(XP21.3) WILD-TYPE    147    116     99
D76V7, multiclass
        clus
vv       DEL PEAK 47(XP21.3) MUTATED DEL PEAK 47(XP21.3) WILD-TYPE
  CLUS_1                          74                           147
  CLUS_2                          36                           116
  CLUS_3                          46                            99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 47(XP21.3) MUTATED       63     48     45
  DEL PEAK 47(XP21.3) WILD-TYPE    127     94    141
D76V8, multiclass
        clus
vv       DEL PEAK 47(XP21.3) MUTATED DEL PEAK 47(XP21.3) WILD-TYPE
  CLUS_1                          63                           127
  CLUS_2                          48                            94
  CLUS_3                          45                           141
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 47(XP21.3) MUTATED       23     42     37     33      5
  DEL PEAK 47(XP21.3) WILD-TYPE     49     98     61     83     42
D76V9, multiclass
        clus
vv       DEL PEAK 47(XP21.3) MUTATED DEL PEAK 47(XP21.3) WILD-TYPE
  CLUS_1                          23                            49
  CLUS_2                          42                            98
  CLUS_3                          37                            61
  CLUS_4                          33                            83
  CLUS_5                           5                            42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 47(XP21.3) MUTATED       49     66     25
  DEL PEAK 47(XP21.3) WILD-TYPE     91    178     64
D76V10, multiclass
        clus
vv       DEL PEAK 47(XP21.3) MUTATED DEL PEAK 47(XP21.3) WILD-TYPE
  CLUS_1                          49                            91
  CLUS_2                          66                           178
  CLUS_3                          25                            64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(77) Variable = DEL PEAK 48(XQ21.33) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 48(XQ21.33) MUTATED       34     34     10      2
  DEL PEAK 48(XQ21.33) WILD-TYPE    121    101    179     41
D77V1, multiclass
        clus
vv       DEL PEAK 48(XQ21.33) MUTATED DEL PEAK 48(XQ21.33) WILD-TYPE
  CLUS_1                           34                            121
  CLUS_2                           34                            101
  CLUS_3                           10                            179
  CLUS_4                            2                             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 48(XQ21.33) MUTATED        4     16     15     31     11      0
  DEL PEAK 48(XQ21.33) WILD-TYPE     80     63     81     61     67     75
                                vv
clus                             CLUS_7
  DEL PEAK 48(XQ21.33) MUTATED        3
  DEL PEAK 48(XQ21.33) WILD-TYPE     15
D77V2, multiclass
        clus
vv       DEL PEAK 48(XQ21.33) MUTATED DEL PEAK 48(XQ21.33) WILD-TYPE
  CLUS_1                            4                             80
  CLUS_2                           16                             63
  CLUS_3                           15                             81
  CLUS_4                           31                             61
  CLUS_5                           11                             67
  CLUS_6                            0                             75
  CLUS_7                            3                             15
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 48(XQ21.33) MUTATED        6      9      3     13
  DEL PEAK 48(XQ21.33) WILD-TYPE     47     42     34     52
D77V3, multiclass
        clus
vv       DEL PEAK 48(XQ21.33) MUTATED DEL PEAK 48(XQ21.33) WILD-TYPE
  CLUS_1                            6                             47
  CLUS_2                            9                             42
  CLUS_3                            3                             34
  CLUS_4                           13                             52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 48(XQ21.33) MUTATED        7     17      7
  DEL PEAK 48(XQ21.33) WILD-TYPE     69     65     41
D77V4, multiclass
        clus
vv       DEL PEAK 48(XQ21.33) MUTATED DEL PEAK 48(XQ21.33) WILD-TYPE
  CLUS_1                            7                             69
  CLUS_2                           17                             65
  CLUS_3                            7                             41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 48(XQ21.33) MUTATED       12     48     19
  DEL PEAK 48(XQ21.33) WILD-TYPE    129    164    142
D77V5, multiclass
        clus
vv       DEL PEAK 48(XQ21.33) MUTATED DEL PEAK 48(XQ21.33) WILD-TYPE
  CLUS_1                           12                            129
  CLUS_2                           48                            164
  CLUS_3                           19                            142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 48(XQ21.33) MUTATED       17     26     23     13
  DEL PEAK 48(XQ21.33) WILD-TYPE    159     77    147     52
D77V6, multiclass
        clus
vv       DEL PEAK 48(XQ21.33) MUTATED DEL PEAK 48(XQ21.33) WILD-TYPE
  CLUS_1                           17                            159
  CLUS_2                           26                             77
  CLUS_3                           23                            147
  CLUS_4                           13                             52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 48(XQ21.33) MUTATED       51     15     13
  DEL PEAK 48(XQ21.33) WILD-TYPE    170    137    132
D77V7, multiclass
        clus
vv       DEL PEAK 48(XQ21.33) MUTATED DEL PEAK 48(XQ21.33) WILD-TYPE
  CLUS_1                           51                            170
  CLUS_2                           15                            137
  CLUS_3                           13                            132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 48(XQ21.33) MUTATED       18     29     32
  DEL PEAK 48(XQ21.33) WILD-TYPE    172    113    154
D77V8, multiclass
        clus
vv       DEL PEAK 48(XQ21.33) MUTATED DEL PEAK 48(XQ21.33) WILD-TYPE
  CLUS_1                           18                            172
  CLUS_2                           29                            113
  CLUS_3                           32                            154
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 48(XQ21.33) MUTATED        7     18     23     18      3
  DEL PEAK 48(XQ21.33) WILD-TYPE     65    122     75     98     44
D77V9, multiclass
        clus
vv       DEL PEAK 48(XQ21.33) MUTATED DEL PEAK 48(XQ21.33) WILD-TYPE
  CLUS_1                            7                             65
  CLUS_2                           18                            122
  CLUS_3                           23                             75
  CLUS_4                           18                             98
  CLUS_5                            3                             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 48(XQ21.33) MUTATED       14     40     15
  DEL PEAK 48(XQ21.33) WILD-TYPE    126    204     74
D77V10, multiclass
        clus
vv       DEL PEAK 48(XQ21.33) MUTATED DEL PEAK 48(XQ21.33) WILD-TYPE
  CLUS_1                           14                            126
  CLUS_2                           40                            204
  CLUS_3                           15                             74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
