[1] "R version 2.15.3 (2013-03-01)"
[1] "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "dx" ""  
[1] "dx" " " 
[1] "dx" " " 
[1] "opt:  APOBEC"
[1] "vtyp==survival in table1 generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==multiclass in table1 generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==binary in table1 table generation"
[1] "vtyp==multiclass in table1 generation"
[1] "vtyp==binary in table1 table generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==multiclass in table1 generation"
[1] "vtyp==binary in table1 table generation"
                                       Clinical feature                        
DAYS_TO_DEATH_OR_LAST_FUP              "DAYS_TO_DEATH_OR_LAST_FUP"             
YEARS_TO_BIRTH                         "YEARS_TO_BIRTH"                        
NEOPLASM_DISEASESTAGE                  "NEOPLASM_DISEASESTAGE"                 
PATHOLOGY_T_STAGE                      "PATHOLOGY_T_STAGE"                     
PATHOLOGY_N_STAGE                      "PATHOLOGY_N_STAGE"                     
GENDER                                 "GENDER"                                
HISTOLOGICAL_TYPE                      "HISTOLOGICAL_TYPE"                     
RADIATIONS_RADIATION_REGIMENINDICATION "RADIATIONS_RADIATION_REGIMENINDICATION"
NUMBER_PACK_YEARS_SMOKED               "NUMBER_PACK_YEARS_SMOKED"              
YEAR_OF_TOBACCO_SMOKING_ONSET          "YEAR_OF_TOBACCO_SMOKING_ONSET"         
NUMBER_OF_LYMPH_NODES                  "NUMBER_OF_LYMPH_NODES"                 
RACE                                   "RACE"                                  
ETHNICITY                              "ETHNICITY"                             
                                       Statistical test           
DAYS_TO_DEATH_OR_LAST_FUP              "Cox regression test"      
YEARS_TO_BIRTH                         "Spearman correlation test"
NEOPLASM_DISEASESTAGE                  "Kruskal-Wallis test"      
PATHOLOGY_T_STAGE                      "Spearman correlation test"
PATHOLOGY_N_STAGE                      "Spearman correlation test"
GENDER                                 "Wilcoxon test"            
HISTOLOGICAL_TYPE                      "Kruskal-Wallis test"      
RADIATIONS_RADIATION_REGIMENINDICATION "Wilcoxon test"            
NUMBER_PACK_YEARS_SMOKED               "Spearman correlation test"
YEAR_OF_TOBACCO_SMOKING_ONSET          "Spearman correlation test"
NUMBER_OF_LYMPH_NODES                  "Spearman correlation test"
RACE                                   "Kruskal-Wallis test"      
ETHNICITY                              "Wilcoxon test"            
                                       Significant variables
DAYS_TO_DEATH_OR_LAST_FUP              "N=0"                
YEARS_TO_BIRTH                         "N=3"                
NEOPLASM_DISEASESTAGE                  "N=0"                
PATHOLOGY_T_STAGE                      "N=3"                
PATHOLOGY_N_STAGE                      "N=0"                
GENDER                                 "N=3"                
HISTOLOGICAL_TYPE                      "N=0"                
RADIATIONS_RADIATION_REGIMENINDICATION "N=0"                
NUMBER_PACK_YEARS_SMOKED               "N=0"                
YEAR_OF_TOBACCO_SMOKING_ONSET          "N=1"                
NUMBER_OF_LYMPH_NODES                  "N=1"                
RACE                                   "N=0"                
ETHNICITY                              "N=0"                
                                       Associated with                       
DAYS_TO_DEATH_OR_LAST_FUP              " "                                   
YEARS_TO_BIRTH                         "older"                               
NEOPLASM_DISEASESTAGE                  " "                                   
PATHOLOGY_T_STAGE                      "higher stage"                        
PATHOLOGY_N_STAGE                      " "                                   
GENDER                                 "male"                                
HISTOLOGICAL_TYPE                      " "                                   
RADIATIONS_RADIATION_REGIMENINDICATION " "                                   
NUMBER_PACK_YEARS_SMOKED               " "                                   
YEAR_OF_TOBACCO_SMOKING_ONSET          "higher year_of_tobacco_smoking_onset"
NUMBER_OF_LYMPH_NODES                  "higher number_of_lymph_nodes"        
RACE                                   " "                                   
ETHNICITY                              " "                                   
                                       &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
DAYS_TO_DEATH_OR_LAST_FUP              " "                                                                                       
YEARS_TO_BIRTH                         "N=3"                                                                                     
NEOPLASM_DISEASESTAGE                  " "                                                                                       
PATHOLOGY_T_STAGE                      "N=3"                                                                                     
PATHOLOGY_N_STAGE                      " "                                                                                       
GENDER                                 "N=3"                                                                                     
HISTOLOGICAL_TYPE                      " "                                                                                       
RADIATIONS_RADIATION_REGIMENINDICATION " "                                                                                       
NUMBER_PACK_YEARS_SMOKED               " "                                                                                       
YEAR_OF_TOBACCO_SMOKING_ONSET          "N=0"                                                                                     
NUMBER_OF_LYMPH_NODES                  "N=1"                                                                                     
RACE                                   " "                                                                                       
ETHNICITY                              " "                                                                                       
                                       Associated with                      
DAYS_TO_DEATH_OR_LAST_FUP              " "                                  
YEARS_TO_BIRTH                         "younger"                            
NEOPLASM_DISEASESTAGE                  " "                                  
PATHOLOGY_T_STAGE                      "lower stage"                        
PATHOLOGY_N_STAGE                      " "                                  
GENDER                                 "female"                             
HISTOLOGICAL_TYPE                      " "                                  
RADIATIONS_RADIATION_REGIMENINDICATION " "                                  
NUMBER_PACK_YEARS_SMOKED               " "                                  
YEAR_OF_TOBACCO_SMOKING_ONSET          "lower year_of_tobacco_smoking_onset"
NUMBER_OF_LYMPH_NODES                  "lower number_of_lymph_nodes"        
RACE                                   " "                                  
ETHNICITY                              " "                                  
                                            
DAYS_TO_DEATH_OR_LAST_FUP              " "  
YEARS_TO_BIRTH                         "N=0"
NEOPLASM_DISEASESTAGE                  " "  
PATHOLOGY_T_STAGE                      "N=0"
PATHOLOGY_N_STAGE                      " "  
GENDER                                 "N=0"
HISTOLOGICAL_TYPE                      " "  
RADIATIONS_RADIATION_REGIMENINDICATION " "  
NUMBER_PACK_YEARS_SMOKED               " "  
YEAR_OF_TOBACCO_SMOKING_ONSET          "N=1"
NUMBER_OF_LYMPH_NODES                  "N=0"
RACE                                   " "  
ETHNICITY                              " "  
[1] "vtyp==survival in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==multiclass in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==binary in basici table generation"
[1] "vtyp==multiclass in basici table generation"
[1] "vtyp==binary in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==multiclass in basici table generation"
[1] "vtyp==binary in basici table generation"
