Pipeline Input Name	Archive Result File REF	Comment [TCGA Archive Name]	Protocol REF	Data Transformation Name	Derived Data File	Comment [TCGA Data Type]	Comment [TCGA Data Level]	Comment [TCGA File Type]	Comment [TCGA Archive Name]	Comment [TCGA Include for Analysis]
rsseg	APOBEC_for_clinical.correlaion.input.continuous.txt	gdac.broadinstitute.org_HNSC-TP.Mutation_APOBEC.Level_4.2015040200.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:11002:1	Correlate_mRNAseq_vs_Mutation_APOBEC_2015040200	HNSC-TPqa.txt	Correlation_reslut	Level_4	txt	gdac.broadinstitute.org_HNSC-TP.Correlate_mRNAseq_vs_Mutation_APOBEC.Level_4.2015040200.0.0	yes
rsseg	APOBEC_for_clinical.correlaion.input.continuous.txt	gdac.broadinstitute.org_HNSC-TP.Mutation_APOBEC.Level_4.2015040200.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:11002:1	Correlate_mRNAseq_vs_Mutation_APOBEC_2015040200	HNSC-TPcors.txt	Correlation_reslut	Level_4	txt	gdac.broadinstitute.org_HNSC-TP.Correlate_mRNAseq_vs_Mutation_APOBEC.Level_4.2015040200.0.0	yes
rsseg	APOBEC_for_clinical.correlaion.input.continuous.txt	gdac.broadinstitute.org_HNSC-TP.Mutation_APOBEC.Level_4.2015040200.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:11002:1	Correlate_mRNAseq_vs_Mutation_APOBEC_2015040200	stdout.txt	Correlation_reslut	Level_4	txt	gdac.broadinstitute.org_HNSC-TP.Correlate_mRNAseq_vs_Mutation_APOBEC.Level_4.2015040200.0.0	yes
rsseg	APOBEC_for_clinical.correlaion.input.continuous.txt	gdac.broadinstitute.org_HNSC-TP.Mutation_APOBEC.Level_4.2015040200.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:11002:1	Correlate_mRNAseq_vs_Mutation_APOBEC_2015040200	stderr.txt	Correlation_reslut	Level_4	txt	gdac.broadinstitute.org_HNSC-TP.Correlate_mRNAseq_vs_Mutation_APOBEC.Level_4.2015040200.0.0	yes
rsseg	APOBEC_for_clinical.correlaion.input.continuous.txt	gdac.broadinstitute.org_HNSC-TP.Mutation_APOBEC.Level_4.2015040200.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:11002:1	Correlate_mRNAseq_vs_Mutation_APOBEC_2015040200	HNSC-TPcors.png	qq_plot	Level_4	png	gdac.broadinstitute.org_HNSC-TP.Correlate_mRNAseq_vs_Mutation_APOBEC.Level_4.2015040200.0.0	yes
rsseg	APOBEC_for_clinical.correlaion.input.continuous.txt	gdac.broadinstitute.org_HNSC-TP.Mutation_APOBEC.Level_4.2015040200.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:11002:1	Correlate_mRNAseq_vs_Mutation_APOBEC_2015040200	nozzle.html	report	Level_4	html	gdac.broadinstitute.org_HNSC-TP.Correlate_mRNAseq_vs_Mutation_APOBEC.Level_4.2015040200.0.0	yes
rsseg	APOBEC_for_clinical.correlaion.input.continuous.txt	gdac.broadinstitute.org_HNSC-TP.Mutation_APOBEC.Level_4.2015040200.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:11002:1	Correlate_mRNAseq_vs_Mutation_APOBEC_2015040200	nozzle.RData	report	Level_4	RData	gdac.broadinstitute.org_HNSC-TP.Correlate_mRNAseq_vs_Mutation_APOBEC.Level_4.2015040200.0.0	yes
mExp	HNSC-TP.uncv2.mRNAseq_RSEM_normalized_log2.txt	gdac.broadinstitute.org_HNSC-TP.mRNAseq_Preprocess.Level_3.2015040200.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:11002:1	Correlate_mRNAseq_vs_Mutation_APOBEC_2015040200	HNSC-TPqa.txt	Correlation_reslut	Level_4	txt	gdac.broadinstitute.org_HNSC-TP.Correlate_mRNAseq_vs_Mutation_APOBEC.Level_4.2015040200.0.0	yes
mExp	HNSC-TP.uncv2.mRNAseq_RSEM_normalized_log2.txt	gdac.broadinstitute.org_HNSC-TP.mRNAseq_Preprocess.Level_3.2015040200.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:11002:1	Correlate_mRNAseq_vs_Mutation_APOBEC_2015040200	HNSC-TPcors.txt	Correlation_reslut	Level_4	txt	gdac.broadinstitute.org_HNSC-TP.Correlate_mRNAseq_vs_Mutation_APOBEC.Level_4.2015040200.0.0	yes
mExp	HNSC-TP.uncv2.mRNAseq_RSEM_normalized_log2.txt	gdac.broadinstitute.org_HNSC-TP.mRNAseq_Preprocess.Level_3.2015040200.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:11002:1	Correlate_mRNAseq_vs_Mutation_APOBEC_2015040200	stdout.txt	Correlation_reslut	Level_4	txt	gdac.broadinstitute.org_HNSC-TP.Correlate_mRNAseq_vs_Mutation_APOBEC.Level_4.2015040200.0.0	yes
mExp	HNSC-TP.uncv2.mRNAseq_RSEM_normalized_log2.txt	gdac.broadinstitute.org_HNSC-TP.mRNAseq_Preprocess.Level_3.2015040200.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:11002:1	Correlate_mRNAseq_vs_Mutation_APOBEC_2015040200	stderr.txt	Correlation_reslut	Level_4	txt	gdac.broadinstitute.org_HNSC-TP.Correlate_mRNAseq_vs_Mutation_APOBEC.Level_4.2015040200.0.0	yes
mExp	HNSC-TP.uncv2.mRNAseq_RSEM_normalized_log2.txt	gdac.broadinstitute.org_HNSC-TP.mRNAseq_Preprocess.Level_3.2015040200.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:11002:1	Correlate_mRNAseq_vs_Mutation_APOBEC_2015040200	HNSC-TPcors.png	qq_plot	Level_4	png	gdac.broadinstitute.org_HNSC-TP.Correlate_mRNAseq_vs_Mutation_APOBEC.Level_4.2015040200.0.0	yes
mExp	HNSC-TP.uncv2.mRNAseq_RSEM_normalized_log2.txt	gdac.broadinstitute.org_HNSC-TP.mRNAseq_Preprocess.Level_3.2015040200.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:11002:1	Correlate_mRNAseq_vs_Mutation_APOBEC_2015040200	nozzle.html	report	Level_4	html	gdac.broadinstitute.org_HNSC-TP.Correlate_mRNAseq_vs_Mutation_APOBEC.Level_4.2015040200.0.0	yes
mExp	HNSC-TP.uncv2.mRNAseq_RSEM_normalized_log2.txt	gdac.broadinstitute.org_HNSC-TP.mRNAseq_Preprocess.Level_3.2015040200.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:11002:1	Correlate_mRNAseq_vs_Mutation_APOBEC_2015040200	nozzle.RData	report	Level_4	RData	gdac.broadinstitute.org_HNSC-TP.Correlate_mRNAseq_vs_Mutation_APOBEC.Level_4.2015040200.0.0	yes
