name	nmut	n_coding	n_flank	n_coding_nonsilent	fracflank	callscheme_name	cov_idx	N_tot	N_c	nsil_tot	nnon_tot	n_tot	rate_sil	rate_non	rate_tot	log_rate_tot	n_c	n_ind	N_ind	rate_c	rate_ind
TCGA-BA-4074-01A-01D-1434-08	178	173	5	132	2.808989e-02	coding only	1	28827981	...	38	114	162	1.318164e-06	3.954491e-06	5.619540e-06	-5.250299e+00	...	9	28771789	...	3.128064e-07
TCGA-BA-4075-01A-01D-1434-08	231	224	7	168	3.030303e-02	exome+100bp flanks	2	35954526	...	54	146	214	1.501897e-06	4.060685e-06	5.951963e-06	-5.225340e+00	...	13	32222400	...	4.034460e-07
TCGA-BA-4076-01A-01D-1434-08	415	390	25	302	6.024096e-02	exome+100bp flanks	2	35954526	...	86	279	380	2.391910e-06	7.759802e-06	1.056891e-05	-4.975970e+00	...	8	32222400	...	2.482745e-07
TCGA-BA-4077-01B-01D-1434-08	397	380	17	283	4.282116e-02	exome+100bp flanks	2	35954526	...	93	258	363	2.586601e-06	7.175731e-06	1.009609e-05	-4.995847e+00	...	11	32222400	...	3.413774e-07
TCGA-BA-4078-01A-01D-1434-08	550	520	30	391	5.454545e-02	exome+100bp flanks	2	35954526	...	124	361	505	3.448801e-06	1.004046e-05	1.404552e-05	-4.852462e+00	...	14	32222400	...	4.344804e-07
TCGA-BA-5149-01A-01D-1512-08	151	145	6	120	3.973510e-02	exome+100bp flanks	2	35954526	...	24	109	139	6.675098e-07	3.031607e-06	3.865995e-06	-5.412739e+00	...	6	32222400	...	1.862059e-07
TCGA-BA-5151-01A-01D-1434-08	117	110	7	81	5.982906e-02	exome+100bp flanks	2	35954526	...	26	72	105	7.231357e-07	2.002530e-06	2.920356e-06	-5.534564e+00	...	4	32222400	...	1.241372e-07
TCGA-BA-5152-01A-02D-1870-08	621	603	18	447	2.898551e-02	coding only	1	28827981	...	151	426	588	5.237967e-06	1.477731e-05	2.039685e-05	-4.690437e+00	...	3	28771789	...	1.042688e-07
TCGA-BA-5153-01A-01D-1434-08	59	57	2	47	3.389831e-02	exome+100bp flanks	2	35954526	...	7	41	51	1.946904e-07	1.140329e-06	1.418458e-06	-5.848183e+00	...	2	32222400	...	6.206862e-08
TCGA-BA-5555-01A-01D-1512-08	174	163	11	133	6.321839e-02	exome+100bp flanks	2	35954526	...	30	120	158	8.343873e-07	3.337549e-06	4.394440e-06	-5.357096e+00	...	5	32222400	...	1.551716e-07
TCGA-BA-5556-01A-01D-1512-08	181	169	12	131	6.629834e-02	exome+100bp flanks	2	35954526	...	32	120	157	8.900131e-07	3.337549e-06	4.366627e-06	-5.359854e+00	...	4	32222400	...	1.241372e-07
TCGA-BA-5557-01A-01D-1512-08	72	63	9	45	1.250000e-01	exome+100bp flanks	2	35954526	...	18	41	62	5.006324e-07	1.140329e-06	1.724400e-06	-5.763362e+00	...	1	32222400	...	3.103431e-08
TCGA-BA-5558-01A-01D-1512-08	204	195	9	134	4.411765e-02	exome+100bp flanks	2	35954526	...	56	118	177	1.557523e-06	3.281923e-06	4.922885e-06	-5.307780e+00	...	3	32222400	...	9.310293e-08
TCGA-BA-5559-01A-01D-1512-08	106	102	4	78	3.773585e-02	exome+100bp flanks	2	35954526	...	22	73	98	6.118840e-07	2.030342e-06	2.725665e-06	-5.564527e+00	...	1	32222400	...	3.103431e-08
TCGA-BA-6868-01B-12D-1912-08	193	183	10	136	5.181347e-02	exome+100bp flanks	2	35954526	...	44	125	179	1.223768e-06	3.476614e-06	4.978511e-06	-5.302901e+00	...	7	32222400	...	2.172402e-07
TCGA-BA-6869-01A-11D-1870-08	571	540	31	411	5.429072e-02	exome+100bp flanks	2	35954526	...	122	373	520	3.393175e-06	1.037422e-05	1.446271e-05	-4.839750e+00	...	16	32222400	...	4.965490e-07
TCGA-BA-6870-01A-11D-1870-08	126	120	6	89	4.761905e-02	exome+100bp flanks	2	35954526	...	30	72	112	8.343873e-07	2.002530e-06	3.115046e-06	-5.506536e+00	...	9	32222400	...	2.793088e-07
TCGA-BA-6871-01A-11D-1870-08	171	166	5	132	2.923977e-02	coding only	1	28827981	...	32	123	159	1.110033e-06	4.266688e-06	5.515475e-06	-5.258417e+00	...	4	28771789	...	1.390251e-07
TCGA-BA-6872-01A-11D-1870-08	209	199	10	161	4.784689e-02	exome+100bp flanks	2	35954526	...	35	141	189	9.734519e-07	3.921620e-06	5.256640e-06	-5.279292e+00	...	11	32222400	...	3.413774e-07
TCGA-BA-6873-01A-11D-1870-08	90	83	7	63	7.777778e-02	exome+100bp flanks	2	35954526	...	19	54	82	5.284453e-07	1.501897e-06	2.280659e-06	-5.641940e+00	...	7	32222400	...	2.172402e-07
TCGA-BA-7269-01A-11D-2012-08	124	116	8	86	6.451613e-02	exome+100bp flanks	2	35954526	...	30	78	113	8.343873e-07	2.169407e-06	3.142859e-06	-5.502675e+00	...	5	32222400	...	1.551716e-07
TCGA-BA-A4IF-01A-11D-A25Y-08	124	118	6	98	4.838710e-02	exome+100bp flanks	2	35954526	...	18	85	113	5.006324e-07	2.364097e-06	3.142859e-06	-5.502675e+00	...	7	32222400	...	2.172402e-07
TCGA-BA-A4IG-01A-11D-A25Y-08	150	144	6	108	4.000000e-02	exome+100bp flanks	2	35954526	...	34	97	140	9.456389e-07	2.697852e-06	3.893807e-06	-5.409626e+00	...	7	32222400	...	2.172402e-07
TCGA-BA-A4IH-01A-11D-A25Y-08	62	59	3	48	4.838710e-02	exome+100bp flanks	2	35954526	...	10	43	56	2.781291e-07	1.195955e-06	1.557523e-06	-5.807566e+00	...	3	32222400	...	9.310293e-08
TCGA-BA-A4II-01A-11D-A25Y-08	128	122	6	92	4.687500e-02	exome+100bp flanks	2	35954526	...	29	81	114	8.065744e-07	2.252846e-06	3.170672e-06	-5.498849e+00	...	4	32222400	...	1.241372e-07
TCGA-BA-A6D8-01A-31D-A31L-08	148	135	13	115	8.783784e-02	exome+100bp flanks	2	35954526	...	19	104	132	5.284453e-07	2.892543e-06	3.671304e-06	-5.435180e+00	...	7	32222400	...	2.172402e-07
TCGA-BA-A6DA-01A-31D-A31L-08	846	808	38	612	4.491726e-02	exome+100bp flanks	2	35954526	...	188	546	768	5.228827e-06	1.518585e-05	2.136031e-05	-4.670392e+00	...	28	32222400	...	8.689607e-07
TCGA-BA-A6DB-01A-11D-A30E-08	47	44	3	33	6.382979e-02	exome+100bp flanks	2	35954526	...	11	32	43	3.059420e-07	8.900131e-07	1.195955e-06	-5.922285e+00	...	0	32222400	...	0
TCGA-BA-A6DD-01A-12D-A31L-08	79	76	3	58	3.797468e-02	exome+100bp flanks	2	35954526	...	15	57	74	4.171937e-07	1.585336e-06	2.058155e-06	-5.686522e+00	...	1	32222400	...	3.103431e-08
TCGA-BA-A6DE-01A-22D-A31L-08	157	149	8	111	5.095541e-02	exome+100bp flanks	2	35954526	...	35	97	141	9.734519e-07	2.697852e-06	3.921620e-06	-5.406534e+00	...	9	32222400	...	2.793088e-07
TCGA-BA-A6DF-01A-11D-A30E-08	213	210	3	167	1.408451e-02	coding only	1	28827981	...	42	150	201	1.456918e-06	5.203278e-06	6.972393e-06	-5.156618e+00	...	8	28771789	...	2.780501e-07
TCGA-BA-A6DG-01A-21D-A30E-08	49	47	2	28	4.081633e-02	exome+100bp flanks	2	35954526	...	17	25	45	4.728195e-07	6.953228e-07	1.251581e-06	-5.902541e+00	...	2	32222400	...	6.206862e-08
TCGA-BA-A6DI-01A-11D-A30E-08	139	128	11	101	7.913669e-02	exome+100bp flanks	2	35954526	...	26	90	120	7.231357e-07	2.503162e-06	3.337549e-06	-5.476572e+00	...	4	32222400	...	1.241372e-07
TCGA-BA-A6DJ-01A-11D-A30E-08	365	356	9	254	2.465753e-02	coding only	1	28827981	...	100	230	343	3.468852e-06	7.978360e-06	1.189816e-05	-4.924520e+00	...	10	28771789	...	3.475627e-07
TCGA-BA-A6DL-01A-21D-A30E-08	131	123	8	99	6.106870e-02	exome+100bp flanks	2	35954526	...	22	89	119	6.118840e-07	2.475349e-06	3.309736e-06	-5.480207e+00	...	4	32222400	...	1.241372e-07
TCGA-BB-4217-01A-11D-2078-08	41	41	0	31	0	exome+100bp flanks	2	35954526	...	10	27	41	2.781291e-07	7.509486e-07	1.140329e-06	-5.942970e+00	...	4	32222400	...	1.241372e-07
TCGA-BB-4223-01A-01D-1434-08	389	384	5	287	1.285347e-02	coding only	1	28827981	...	92	268	365	3.191344e-06	9.296523e-06	1.266131e-05	-4.897521e+00	...	3	28771789	...	1.042688e-07
TCGA-BB-4224-01A-01D-1434-08	103	97	6	76	5.825243e-02	exome+100bp flanks	2	35954526	...	20	64	92	5.562582e-07	1.780026e-06	2.558788e-06	-5.591966e+00	...	6	32222400	...	1.862059e-07
TCGA-BB-4225-01A-01D-1434-08	97	96	1	63	1.030928e-02	coding only	1	28827981	...	32	59	92	1.110033e-06	2.046623e-06	3.191344e-06	-5.496026e+00	...	0	28771789	...	0
TCGA-BB-4227-01A-01D-1870-08	329	319	10	222	3.039514e-02	exome+100bp flanks	2	35954526	...	92	192	299	2.558788e-06	5.340079e-06	8.316060e-06	-5.080082e+00	...	12	32222400	...	3.724117e-07
TCGA-BB-4228-01A-01D-1434-08	63	60	3	45	4.761905e-02	exome+100bp flanks	2	35954526	...	14	43	59	3.893807e-07	1.195955e-06	1.640962e-06	-5.784902e+00	...	2	32222400	...	6.206862e-08
TCGA-BB-7861-01A-11D-2229-08	32	28	4	21	1.250000e-01	exome+100bp flanks	2	35954526	...	7	19	29	1.946904e-07	5.284453e-07	8.065744e-07	-6.093356e+00	...	2	32222400	...	6.206862e-08
TCGA-BB-7862-01A-21D-2229-08	485	469	16	341	3.298969e-02	exome+100bp flanks	2	35954526	...	121	296	442	3.365362e-06	8.232621e-06	1.229331e-05	-4.910331e+00	...	22	32222400	...	6.827549e-07
TCGA-BB-7863-01A-11D-2229-08	127	123	4	89	3.149606e-02	exome+100bp flanks	2	35954526	...	32	75	115	8.900131e-07	2.085968e-06	3.198485e-06	-5.495056e+00	...	8	32222400	...	2.482745e-07
TCGA-BB-7864-01A-11D-2229-08	105	100	5	76	4.761905e-02	exome+100bp flanks	2	35954526	...	21	64	96	5.840711e-07	1.780026e-06	2.670039e-06	-5.573482e+00	...	9	32222400	...	2.793088e-07
TCGA-BB-7870-01A-11D-2229-08	365	339	26	258	7.123288e-02	exome+100bp flanks	2	35954526	...	77	229	326	2.141594e-06	6.369156e-06	9.067009e-06	-5.042536e+00	...	17	32222400	...	5.275833e-07
TCGA-BB-7871-01A-11D-2229-08	546	520	26	418	4.761905e-02	exome+100bp flanks	2	35954526	...	101	385	508	2.809104e-06	1.070797e-05	1.412896e-05	-4.849890e+00	...	16	32222400	...	4.965490e-07
TCGA-BB-7872-01A-11D-2229-08	104	100	4	74	3.846154e-02	exome+100bp flanks	2	35954526	...	25	65	94	6.953228e-07	1.807839e-06	2.614414e-06	-5.582626e+00	...	4	32222400	...	1.241372e-07
TCGA-BB-8596-01A-11D-2394-08	114	110	4	75	3.508772e-02	exome+100bp flanks	2	35954526	...	34	70	108	9.456389e-07	1.946904e-06	3.003794e-06	-5.522330e+00	...	2	32222400	...	6.206862e-08
TCGA-BB-8601-01A-11D-2394-08	85	80	5	61	5.882353e-02	exome+100bp flanks	2	35954526	...	19	49	76	5.284453e-07	1.362833e-06	2.113781e-06	-5.674940e+00	...	8	32222400	...	2.482745e-07
TCGA-BB-A5HU-01A-11D-A28R-08	220	217	3	159	1.363636e-02	coding only	1	28827981	...	57	154	214	1.977246e-06	5.342032e-06	7.423343e-06	-5.129400e+00	...	1	28771789	...	3.475627e-08
TCGA-BB-A5HY-01A-11D-A28R-08	262	256	6	203	2.290076e-02	coding only	1	28827981	...	48	183	245	1.665049e-06	6.347999e-06	8.498687e-06	-5.070648e+00	...	10	28771789	...	3.475627e-07
TCGA-BB-A5HZ-01A-21D-A28R-08	98	92	6	63	6.122449e-02	exome+100bp flanks	2	35954526	...	29	48	90	8.065744e-07	1.335020e-06	2.503162e-06	-5.601511e+00	...	11	32222400	...	3.413774e-07
TCGA-BB-A6UM-01A-12D-A34J-08	85	80	5	57	5.882353e-02	exome+100bp flanks	2	35954526	...	21	54	75	5.840711e-07	1.501897e-06	2.085968e-06	-5.680692e+00	...	0	32222400	...	0
TCGA-BB-A6UO-01A-12D-A34J-08	135	131	4	98	2.962963e-02	coding only	1	28827981	...	33	84	128	1.144721e-06	2.913836e-06	4.440131e-06	-5.352604e+00	...	11	28771789	...	3.823189e-07
TCGA-C9-A47Z-01A-11D-A24D-08	129	125	4	95	3.100775e-02	exome+100bp flanks	2	35954526	...	30	79	117	8.343873e-07	2.197220e-06	3.254110e-06	-5.487568e+00	...	7	32222400	...	2.172402e-07
TCGA-C9-A480-01A-12D-A24D-08	66	63	3	43	4.545455e-02	exome+100bp flanks	2	35954526	...	19	37	59	5.284453e-07	1.029078e-06	1.640962e-06	-5.784902e+00	...	1	32222400	...	3.103431e-08
TCGA-CN-4723-01A-01D-1434-08	1092	1067	25	791	2.289377e-02	coding only	1	28827981	...	264	742	1027	9.157769e-06	2.573888e-05	3.562511e-05	-4.448244e+00	...	12	28771789	...	4.170752e-07
TCGA-CN-4725-01A-01D-1434-08	80	76	4	53	5.000000e-02	exome+100bp flanks	2	35954526	...	22	48	76	6.118840e-07	1.335020e-06	2.113781e-06	-5.674940e+00	...	5	32222400	...	1.551716e-07
TCGA-CN-4726-01A-01D-1434-08	108	101	7	72	6.481481e-02	exome+100bp flanks	2	35954526	...	28	65	96	7.787615e-07	1.807839e-06	2.670039e-06	-5.573482e+00	...	2	32222400	...	6.206862e-08
TCGA-CN-4727-01A-01D-1434-08	540	517	23	402	4.259259e-02	exome+100bp flanks	2	35954526	...	110	364	495	3.059420e-06	1.012390e-05	1.376739e-05	-4.861148e+00	...	18	32222400	...	5.586176e-07
TCGA-CN-4728-01A-01D-1434-08	166	158	8	118	4.819277e-02	exome+100bp flanks	2	35954526	...	38	102	153	1.056891e-06	2.836917e-06	4.255375e-06	-5.371062e+00	...	10	32222400	...	3.103431e-07
TCGA-CN-4729-01A-01D-1434-08	186	179	7	124	3.763441e-02	exome+100bp flanks	2	35954526	...	52	100	164	1.446271e-06	2.781291e-06	4.561317e-06	-5.340910e+00	...	10	32222400	...	3.103431e-07
TCGA-CN-4730-01A-01D-1434-08	205	199	6	155	2.926829e-02	coding only	1	28827981	...	42	139	189	1.456918e-06	4.821704e-06	6.556130e-06	-5.183352e+00	...	4	28771789	...	1.390251e-07
TCGA-CN-4731-01A-01D-1434-08	151	148	3	103	1.986755e-02	coding only	1	28827981	...	45	89	146	1.560983e-06	3.087278e-06	5.064524e-06	-5.295461e+00	...	11	28771789	...	3.823189e-07
TCGA-CN-4733-01A-02D-1870-08	52	48	4	35	7.692308e-02	exome+100bp flanks	2	35954526	...	13	32	47	3.615678e-07	8.900131e-07	1.307207e-06	-5.883656e+00	...	1	32222400	...	3.103431e-08
TCGA-CN-4734-01A-01D-1434-08	191	189	2	135	1.047120e-02	coding only	1	28827981	...	51	128	185	1.769115e-06	4.440131e-06	6.417376e-06	-5.192642e+00	...	6	28771789	...	2.085376e-07
TCGA-CN-4735-01A-01D-1434-08	191	180	11	136	5.759162e-02	exome+100bp flanks	2	35954526	...	41	129	173	1.140329e-06	3.587865e-06	4.811633e-06	-5.317707e+00	...	1	32222400	...	3.103431e-08
TCGA-CN-4736-01A-01D-1434-08	123	119	4	100	3.252033e-02	exome+100bp flanks	2	35954526	...	16	90	111	4.450066e-07	2.503162e-06	3.087233e-06	-5.510431e+00	...	5	32222400	...	1.551716e-07
TCGA-CN-4737-01A-01D-1434-08	63	60	3	41	4.761905e-02	exome+100bp flanks	2	35954526	...	18	33	55	5.006324e-07	9.178260e-07	1.529710e-06	-5.815391e+00	...	2	32222400	...	6.206862e-08
TCGA-CN-4738-01A-02D-1512-08	138	134	4	99	2.898551e-02	coding only	1	28827981	...	35	92	131	1.214098e-06	3.191344e-06	4.544196e-06	-5.342543e+00	...	3	28771789	...	1.042688e-07
TCGA-CN-4739-01A-02D-1512-08	269	254	15	192	5.576208e-02	exome+100bp flanks	2	35954526	...	59	173	241	1.640962e-06	4.811633e-06	6.702911e-06	-5.173737e+00	...	7	32222400	...	2.172402e-07
TCGA-CN-4740-01A-01D-1434-08	188	179	9	137	4.787234e-02	exome+100bp flanks	2	35954526	...	39	126	169	1.084703e-06	3.504427e-06	4.700382e-06	-5.327867e+00	...	4	32222400	...	1.241372e-07
TCGA-CN-4741-01A-01D-1434-08	215	205	10	153	4.651163e-02	exome+100bp flanks	2	35954526	...	48	140	192	1.335020e-06	3.893807e-06	5.340079e-06	-5.272452e+00	...	1	32222400	...	3.103431e-08
TCGA-CN-4742-01A-02D-1512-08	107	99	8	79	7.476636e-02	exome+100bp flanks	2	35954526	...	20	71	98	5.562582e-07	1.974717e-06	2.725665e-06	-5.564527e+00	...	5	32222400	...	1.551716e-07
TCGA-CN-5355-01A-01D-1434-08	144	137	7	110	4.861111e-02	exome+100bp flanks	2	35954526	...	26	99	132	7.231357e-07	2.753478e-06	3.671304e-06	-5.435180e+00	...	6	32222400	...	1.862059e-07
TCGA-CN-5356-01A-01D-1434-08	433	410	23	313	5.311778e-02	exome+100bp flanks	2	35954526	...	95	289	403	2.642226e-06	8.037931e-06	1.120860e-05	-4.950449e+00	...	16	32222400	...	4.965490e-07
TCGA-CN-5358-01A-01D-1512-08	71	68	3	55	4.225352e-02	exome+100bp flanks	2	35954526	...	13	49	65	3.615678e-07	1.362833e-06	1.807839e-06	-5.742840e+00	...	2	32222400	...	6.206862e-08
TCGA-CN-5359-01A-01D-1434-08	198	192	6	145	3.030303e-02	exome+100bp flanks	2	35954526	...	44	134	188	1.223768e-06	3.726930e-06	5.228827e-06	-5.281596e+00	...	8	32222400	...	2.482745e-07
TCGA-CN-5360-01A-01D-1434-08	623	593	30	459	4.815409e-02	exome+100bp flanks	2	35954526	...	132	409	569	3.671304e-06	1.137548e-05	1.582555e-05	-4.800641e+00	...	16	32222400	...	4.965490e-07
TCGA-CN-5361-01A-01D-1434-08	145	137	8	92	5.517241e-02	exome+100bp flanks	2	35954526	...	45	78	133	1.251581e-06	2.169407e-06	3.699117e-06	-5.431902e+00	...	9	32222400	...	2.793088e-07
TCGA-CN-5363-01A-01D-1434-08	239	226	13	165	5.439331e-02	exome+100bp flanks	2	35954526	...	61	142	218	1.696588e-06	3.949433e-06	6.063214e-06	-5.217297e+00	...	14	32222400	...	4.344804e-07
TCGA-CN-5364-01A-01D-1434-08	163	155	8	131	4.907975e-02	exome+100bp flanks	2	35954526	...	22	122	152	6.118840e-07	3.393175e-06	4.227562e-06	-5.373910e+00	...	7	32222400	...	2.172402e-07
TCGA-CN-5365-01A-01D-1434-08	115	104	11	80	9.565217e-02	exome+100bp flanks	2	35954526	...	24	71	105	6.675098e-07	1.974717e-06	2.920356e-06	-5.534564e+00	...	7	32222400	...	2.172402e-07
TCGA-CN-5366-01A-01D-1434-08	134	124	10	98	7.462687e-02	exome+100bp flanks	2	35954526	...	24	87	120	6.675098e-07	2.419723e-06	3.337549e-06	-5.476572e+00	...	9	32222400	...	2.793088e-07
TCGA-CN-5367-01A-01D-1434-08	130	122	8	97	6.153846e-02	exome+100bp flanks	2	35954526	...	21	87	113	5.840711e-07	2.419723e-06	3.142859e-06	-5.502675e+00	...	5	32222400	...	1.551716e-07
TCGA-CN-5369-01A-01D-1434-08	598	580	18	444	3.010033e-02	exome+100bp flanks	2	35954526	...	128	361	547	3.560052e-06	1.004046e-05	1.521366e-05	-4.817766e+00	...	50	32222400	...	1.551716e-06
TCGA-CN-5370-01A-01D-2012-08	132	126	6	100	4.545455e-02	exome+100bp flanks	2	35954526	...	26	88	121	7.231357e-07	2.447536e-06	3.365362e-06	-5.472968e+00	...	6	32222400	...	1.862059e-07
TCGA-CN-5373-01A-01D-1434-08	201	196	5	143	2.487562e-02	coding only	1	28827981	...	52	123	187	1.803803e-06	4.266688e-06	6.486753e-06	-5.187973e+00	...	10	28771789	...	3.475627e-07
TCGA-CN-5374-01A-01D-1434-08	221	213	8	153	3.619910e-02	exome+100bp flanks	2	35954526	...	58	141	203	1.613149e-06	3.921620e-06	5.646021e-06	-5.248258e+00	...	1	32222400	...	3.103431e-08
TCGA-CN-6010-01A-11D-1683-08	189	181	8	136	4.232804e-02	exome+100bp flanks	2	35954526	...	41	119	168	1.140329e-06	3.309736e-06	4.672569e-06	-5.330444e+00	...	5	32222400	...	1.551716e-07
TCGA-CN-6011-01A-11D-1683-08	433	418	15	312	3.464203e-02	exome+100bp flanks	2	35954526	...	100	291	400	2.781291e-06	8.093557e-06	1.112516e-05	-4.953694e+00	...	5	32222400	...	1.551716e-07
TCGA-CN-6012-01A-11D-1683-08	141	139	2	113	1.418440e-02	coding only	1	28827981	...	26	101	136	9.019015e-07	3.503541e-06	4.717639e-06	-5.326275e+00	...	6	28771789	...	2.085376e-07
TCGA-CN-6013-01A-11D-1683-08	226	222	4	172	1.769912e-02	coding only	1	28827981	...	49	159	209	1.699737e-06	5.515475e-06	7.249901e-06	-5.139668e+00	...	0	28771789	...	0
TCGA-CN-6016-01A-11D-1683-08	144	141	3	104	2.083333e-02	coding only	1	28827981	...	34	95	132	1.179410e-06	3.295409e-06	4.578885e-06	-5.339240e+00	...	2	28771789	...	6.951254e-08
TCGA-CN-6017-01A-11D-1683-08	9	9	0	7	0	exome+100bp flanks	2	35954526	...	2	5	8	5.562582e-08	1.390646e-07	2.225033e-07	-6.652664e+00	...	1	32222400	...	3.103431e-08
TCGA-CN-6018-01A-11D-1683-08	144	138	6	99	4.166667e-02	exome+100bp flanks	2	35954526	...	37	88	135	1.029078e-06	2.447536e-06	3.754743e-06	-5.425420e+00	...	8	32222400	...	2.482745e-07
TCGA-CN-6019-01A-11D-1683-08	162	157	5	128	3.086420e-02	exome+100bp flanks	2	35954526	...	28	119	155	7.787615e-07	3.309736e-06	4.311001e-06	-5.365422e+00	...	6	32222400	...	1.862059e-07
TCGA-CN-6020-01A-11D-1683-08	194	183	11	131	5.670103e-02	exome+100bp flanks	2	35954526	...	49	123	179	1.362833e-06	3.420988e-06	4.978511e-06	-5.302901e+00	...	4	32222400	...	1.241372e-07
TCGA-CN-6021-01A-11D-1683-08	346	327	19	261	5.491329e-02	exome+100bp flanks	2	35954526	...	65	228	311	1.807839e-06	6.341344e-06	8.649815e-06	-5.062993e+00	...	15	32222400	...	4.655147e-07
TCGA-CN-6022-01A-21D-1683-08	95	94	1	65	1.052632e-02	coding only	1	28827981	...	28	62	92	9.712786e-07	2.150688e-06	3.191344e-06	-5.496026e+00	...	1	28771789	...	3.475627e-08
TCGA-CN-6023-01A-11D-1683-08	135	128	7	108	5.185185e-02	exome+100bp flanks	2	35954526	...	19	93	120	5.284453e-07	2.586601e-06	3.337549e-06	-5.476572e+00	...	6	32222400	...	1.862059e-07
TCGA-CN-6024-01A-11D-1683-08	217	209	8	137	3.686636e-02	exome+100bp flanks	2	35954526	...	70	123	202	1.946904e-06	3.420988e-06	5.618208e-06	-5.250402e+00	...	8	32222400	...	2.482745e-07
TCGA-CN-6988-01A-11D-1912-08	185	181	4	138	2.162162e-02	coding only	1	28827981	...	41	129	179	1.422229e-06	4.474819e-06	6.209245e-06	-5.206961e+00	...	8	28771789	...	2.780501e-07
TCGA-CN-6989-01A-11D-1912-08	127	120	7	91	5.511811e-02	exome+100bp flanks	2	35954526	...	29	81	118	8.065744e-07	2.252846e-06	3.281923e-06	-5.483872e+00	...	6	32222400	...	1.862059e-07
TCGA-CN-6992-01A-11D-1912-08	407	391	16	298	3.931204e-02	exome+100bp flanks	2	35954526	...	90	271	374	2.503162e-06	7.537299e-06	1.040203e-05	-4.982882e+00	...	10	32222400	...	3.103431e-07
TCGA-CN-6994-01A-11D-1912-08	151	140	11	103	7.284768e-02	exome+100bp flanks	2	35954526	...	33	95	132	9.178260e-07	2.642226e-06	3.671304e-06	-5.435180e+00	...	3	32222400	...	9.310293e-08
TCGA-CN-6995-01A-31D-2012-08	267	258	9	208	3.370787e-02	exome+100bp flanks	2	35954526	...	49	187	246	1.362833e-06	5.201014e-06	6.841976e-06	-5.164818e+00	...	8	32222400	...	2.482745e-07
TCGA-CN-6996-01A-11D-1912-08	70	66	4	51	5.714286e-02	exome+100bp flanks	2	35954526	...	14	47	61	3.893807e-07	1.307207e-06	1.696588e-06	-5.770424e+00	...	0	32222400	...	0
TCGA-CN-6997-01A-11D-2012-08	163	160	3	131	1.840491e-02	coding only	1	28827981	...	29	113	151	1.005967e-06	3.919803e-06	5.237967e-06	-5.280837e+00	...	8	28771789	...	2.780501e-07
TCGA-CN-6998-01A-23D-2012-08	106	101	5	69	4.716981e-02	exome+100bp flanks	2	35954526	...	28	61	94	7.787615e-07	1.696588e-06	2.614414e-06	-5.582626e+00	...	4	32222400	...	1.241372e-07
TCGA-CN-A497-01A-11D-A24D-08	417	406	11	318	2.637890e-02	coding only	1	28827981	...	84	284	389	2.913836e-06	9.851540e-06	1.349383e-05	-4.869865e+00	...	17	28771789	...	5.908566e-07
TCGA-CN-A498-01A-11D-A24D-08	145	139	6	109	4.137931e-02	exome+100bp flanks	2	35954526	...	28	98	134	7.787615e-07	2.725665e-06	3.726930e-06	-5.428649e+00	...	5	32222400	...	1.551716e-07
TCGA-CN-A499-01A-11D-A24D-08	54	50	4	38	7.407407e-02	exome+100bp flanks	2	35954526	...	10	31	47	2.781291e-07	8.622002e-07	1.307207e-06	-5.883656e+00	...	4	32222400	...	1.241372e-07
TCGA-CN-A49A-01A-11D-A24D-08	149	143	6	108	4.026846e-02	exome+100bp flanks	2	35954526	...	34	98	136	9.456389e-07	2.725665e-06	3.782556e-06	-5.422215e+00	...	3	32222400	...	9.310293e-08
TCGA-CN-A49B-01A-31D-A24D-08	129	126	3	99	2.325581e-02	coding only	1	28827981	...	26	88	118	9.019015e-07	3.052590e-06	4.093245e-06	-5.387932e+00	...	2	28771789	...	6.951254e-08
TCGA-CN-A49C-01A-11D-A24D-08	76	72	4	46	5.263158e-02	exome+100bp flanks	2	35954526	...	26	40	71	7.231357e-07	1.112516e-06	1.974717e-06	-5.704495e+00	...	4	32222400	...	1.241372e-07
TCGA-CN-A63T-01A-11D-A28R-08	320	305	15	232	4.687500e-02	exome+100bp flanks	2	35954526	...	72	207	293	2.002530e-06	5.757272e-06	8.149183e-06	-5.088886e+00	...	12	32222400	...	3.724117e-07
TCGA-CN-A63U-01A-11D-A30E-08	651	624	27	485	4.147465e-02	exome+100bp flanks	2	35954526	...	133	433	602	3.699117e-06	1.204299e-05	1.674337e-05	-4.776157e+00	...	28	32222400	...	8.689607e-07
TCGA-CN-A63V-01A-11D-A28R-08	100	93	7	77	7.000000e-02	exome+100bp flanks	2	35954526	...	15	66	85	4.171937e-07	1.835652e-06	2.364097e-06	-5.626335e+00	...	3	32222400	...	9.310293e-08
TCGA-CN-A63W-01A-11D-A30E-08	484	470	14	360	2.892562e-02	coding only	1	28827981	...	102	320	444	3.538229e-06	1.110033e-05	1.540170e-05	-4.812431e+00	...	17	28771789	...	5.908566e-07
TCGA-CN-A63Y-01A-11D-A30E-08	216	209	7	145	3.240741e-02	exome+100bp flanks	2	35954526	...	63	138	205	1.752213e-06	3.838182e-06	5.701647e-06	-5.244000e+00	...	3	32222400	...	9.310293e-08
TCGA-CN-A640-01A-21D-A30E-08	102	94	8	74	7.843137e-02	exome+100bp flanks	2	35954526	...	18	64	91	5.006324e-07	1.780026e-06	2.530975e-06	-5.596712e+00	...	8	32222400	...	2.482745e-07
TCGA-CN-A641-01A-11D-A30E-08	270	260	10	195	3.703704e-02	exome+100bp flanks	2	35954526	...	60	172	245	1.668775e-06	4.783821e-06	6.814163e-06	-5.166587e+00	...	9	32222400	...	2.793088e-07
TCGA-CN-A642-01A-12D-A30E-08	113	107	6	86	5.309735e-02	exome+100bp flanks	2	35954526	...	20	76	101	5.562582e-07	2.113781e-06	2.809104e-06	-5.551432e+00	...	4	32222400	...	1.241372e-07
TCGA-CN-A6UY-01A-12D-A34J-08	57	52	5	35	8.771930e-02	exome+100bp flanks	2	35954526	...	17	32	50	4.728195e-07	8.900131e-07	1.390646e-06	-5.856784e+00	...	1	32222400	...	3.103431e-08
TCGA-CN-A6V1-01A-12D-A34J-08	500	492	8	341	1.600000e-02	coding only	1	28827981	...	149	321	476	5.168590e-06	1.113501e-05	1.651174e-05	-4.782207e+00	...	2	28771789	...	6.951254e-08
TCGA-CN-A6V3-01A-12D-A34J-08	295	283	12	211	4.067797e-02	exome+100bp flanks	2	35954526	...	70	192	272	1.946904e-06	5.340079e-06	7.565112e-06	-5.121185e+00	...	10	32222400	...	3.103431e-07
TCGA-CN-A6V6-01A-12D-A34J-08	105	102	3	74	2.857143e-02	coding only	1	28827981	...	27	65	98	9.365900e-07	2.254754e-06	3.399475e-06	-5.468588e+00	...	5	28771789	...	1.737813e-07
TCGA-CN-A6V7-01A-12D-A34J-08	68	66	2	45	2.941176e-02	coding only	1	28827981	...	20	41	62	6.937704e-07	1.422229e-06	2.150688e-06	-5.667423e+00	...	1	28771789	...	3.475627e-08
TCGA-CQ-5323-01A-01D-1683-08	90	86	4	67	4.444444e-02	exome+100bp flanks	2	35954526	...	18	56	80	5.006324e-07	1.557523e-06	2.225033e-06	-5.652664e+00	...	5	32222400	...	1.551716e-07
TCGA-CQ-5324-01A-01D-1683-08	85	83	2	67	2.352941e-02	coding only	1	28827981	...	14	59	80	4.856393e-07	2.046623e-06	2.775082e-06	-5.556724e+00	...	5	28771789	...	1.737813e-07
TCGA-CQ-5325-01A-01D-1683-08	70	67	3	55	4.285714e-02	exome+100bp flanks	2	35954526	...	12	53	66	3.337549e-07	1.474084e-06	1.835652e-06	-5.736210e+00	...	1	32222400	...	3.103431e-08
TCGA-CQ-5326-01A-01D-1870-08	269	264	5	185	1.858736e-02	coding only	1	28827981	...	73	175	253	2.532262e-06	6.070491e-06	8.776196e-06	-5.056694e+00	...	3	28771789	...	1.042688e-07
TCGA-CQ-5327-01A-01D-1683-08	281	272	9	206	3.202847e-02	exome+100bp flanks	2	35954526	...	64	182	261	1.780026e-06	5.061950e-06	7.259170e-06	-5.139113e+00	...	12	32222400	...	3.724117e-07
TCGA-CQ-5329-01A-01D-1683-08	43	41	2	32	4.651163e-02	exome+100bp flanks	2	35954526	...	8	28	38	2.225033e-07	7.787615e-07	1.056891e-06	-5.975970e+00	...	2	32222400	...	6.206862e-08
TCGA-CQ-5330-01A-01D-1683-08	82	80	2	62	2.439024e-02	coding only	1	28827981	...	18	59	80	6.243934e-07	2.046623e-06	2.775082e-06	-5.556724e+00	...	2	28771789	...	6.951254e-08
TCGA-CQ-5331-01A-02D-1870-08	175	173	2	138	1.142857e-02	coding only	1	28827981	...	35	126	163	1.214098e-06	4.370754e-06	5.654229e-06	-5.247627e+00	...	2	28771789	...	6.951254e-08
TCGA-CQ-5332-01A-01D-1683-08	177	169	8	130	4.519774e-02	exome+100bp flanks	2	35954526	...	36	116	160	1.001265e-06	3.226298e-06	4.450066e-06	-5.351634e+00	...	5	32222400	...	1.551716e-07
TCGA-CQ-5333-01A-01D-2394-08	254	250	4	186	1.574803e-02	coding only	1	28827981	...	59	174	238	2.046623e-06	6.035803e-06	8.255868e-06	-5.083237e+00	...	5	28771789	...	1.737813e-07
TCGA-CQ-5334-01A-01D-1683-08	227	219	8	168	3.524229e-02	exome+100bp flanks	2	35954526	...	49	152	210	1.362833e-06	4.227562e-06	5.840711e-06	-5.233534e+00	...	8	32222400	...	2.482745e-07
TCGA-CQ-6218-01A-11D-1912-08	173	164	9	113	5.202312e-02	exome+100bp flanks	2	35954526	...	46	106	159	1.279394e-06	2.948168e-06	4.422253e-06	-5.354356e+00	...	5	32222400	...	1.551716e-07
TCGA-CQ-6219-01A-11D-1912-08	89	87	2	63	2.247191e-02	coding only	1	28827981	...	24	59	86	8.325245e-07	2.046623e-06	2.983213e-06	-5.525316e+00	...	3	28771789	...	1.042688e-07
TCGA-CQ-6220-01A-11D-1912-08	140	136	4	103	2.857143e-02	coding only	1	28827981	...	33	95	132	1.144721e-06	3.295409e-06	4.578885e-06	-5.339240e+00	...	2	28771789	...	6.951254e-08
TCGA-CQ-6221-01A-11D-2078-08	140	136	4	110	2.857143e-02	coding only	1	28827981	...	25	90	129	8.672130e-07	3.121967e-06	4.474819e-06	-5.349225e+00	...	12	28771789	...	4.170752e-07
TCGA-CQ-6222-01A-11D-1912-08	79	77	2	60	2.531646e-02	coding only	1	28827981	...	17	55	76	5.897048e-07	1.907869e-06	2.636328e-06	-5.579001e+00	...	3	28771789	...	1.042688e-07
TCGA-CQ-6223-01A-11D-1912-08	111	107	4	80	3.603604e-02	exome+100bp flanks	2	35954526	...	25	75	102	6.953228e-07	2.085968e-06	2.836917e-06	-5.547153e+00	...	2	32222400	...	6.206862e-08
TCGA-CQ-6224-01A-11D-1912-08	93	91	2	62	2.150538e-02	coding only	1	28827981	...	26	59	86	9.019015e-07	2.046623e-06	2.983213e-06	-5.525316e+00	...	1	28771789	...	3.475627e-08
TCGA-CQ-6225-01A-11D-1912-08	192	186	6	145	3.125000e-02	exome+100bp flanks	2	35954526	...	39	118	172	1.084703e-06	3.281923e-06	4.783821e-06	-5.320225e+00	...	15	32222400	...	4.655147e-07
TCGA-CQ-6227-01A-11D-1912-08	57	55	2	44	3.508772e-02	exome+100bp flanks	2	35954526	...	10	40	51	2.781291e-07	1.112516e-06	1.418458e-06	-5.848183e+00	...	1	32222400	...	3.103431e-08
TCGA-CQ-6228-01A-11D-1912-08	130	126	4	106	3.076923e-02	exome+100bp flanks	2	35954526	...	17	95	118	4.728195e-07	2.642226e-06	3.281923e-06	-5.483872e+00	...	2	32222400	...	6.206862e-08
TCGA-CQ-6229-01A-11D-1912-08	38	36	2	26	5.263158e-02	exome+100bp flanks	2	35954526	...	10	21	35	2.781291e-07	5.840711e-07	9.734519e-07	-6.011686e+00	...	4	32222400	...	1.241372e-07
TCGA-CQ-7063-01A-11D-2394-08	172	164	8	125	4.651163e-02	exome+100bp flanks	2	35954526	...	37	114	155	1.029078e-06	3.170672e-06	4.311001e-06	-5.365422e+00	...	3	32222400	...	9.310293e-08
TCGA-CQ-7064-01A-11D-2394-08	132	128	4	95	3.030303e-02	exome+100bp flanks	2	35954526	...	32	89	124	8.900131e-07	2.475349e-06	3.448801e-06	-5.462332e+00	...	3	32222400	...	9.310293e-08
TCGA-CQ-7065-01A-11D-2078-08	40	39	1	27	2.500000e-02	exome+100bp flanks	2	35954526	...	11	24	37	3.059420e-07	6.675098e-07	1.029078e-06	-5.987552e+00	...	2	32222400	...	6.206862e-08
TCGA-CQ-7067-01A-11D-2229-08	90	86	4	72	4.444444e-02	exome+100bp flanks	2	35954526	...	12	62	78	3.337549e-07	1.724400e-06	2.169407e-06	-5.663659e+00	...	4	32222400	...	1.241372e-07
TCGA-CQ-7068-01A-11D-2078-08	139	129	10	91	7.194245e-02	exome+100bp flanks	2	35954526	...	37	82	125	1.029078e-06	2.280659e-06	3.476614e-06	-5.458844e+00	...	5	32222400	...	1.551716e-07
TCGA-CQ-7069-01A-11D-2394-08	117	107	10	87	8.547009e-02	exome+100bp flanks	2	35954526	...	20	80	104	5.562582e-07	2.225033e-06	2.892543e-06	-5.538720e+00	...	3	32222400	...	9.310293e-08
TCGA-CQ-7071-01A-12D-A30E-08	556	546	10	436	1.798561e-02	coding only	1	28827981	...	101	402	523	3.503541e-06	1.394479e-05	1.814210e-05	-4.741313e+00	...	15	28771789	...	5.213440e-07
TCGA-CQ-7072-01A-21D-A30E-08	153	145	8	123	5.228758e-02	exome+100bp flanks	2	35954526	...	22	110	140	6.118840e-07	3.059420e-06	3.893807e-06	-5.409626e+00	...	4	32222400	...	1.241372e-07
TCGA-CQ-A4C6-01A-11D-A25D-08	127	123	4	99	3.149606e-02	exome+100bp flanks	2	35954526	...	24	95	121	6.675098e-07	2.642226e-06	3.365362e-06	-5.472968e+00	...	0	32222400	...	0
TCGA-CQ-A4C7-01A-11D-A25D-08	75	73	2	55	2.666667e-02	coding only	1	28827981	...	18	49	73	6.243934e-07	1.699737e-06	2.532262e-06	-5.596491e+00	...	5	28771789	...	1.737813e-07
TCGA-CQ-A4C9-01A-11D-A25D-08	122	118	4	88	3.278689e-02	exome+100bp flanks	2	35954526	...	29	81	113	8.065744e-07	2.252846e-06	3.142859e-06	-5.502675e+00	...	2	32222400	...	6.206862e-08
TCGA-CQ-A4CB-01A-11D-A25D-08	107	105	2	89	1.869159e-02	coding only	1	28827981	...	16	83	105	5.550163e-07	2.879147e-06	3.642295e-06	-5.438625e+00	...	4	28771789	...	1.390251e-07
TCGA-CQ-A4CD-01A-21D-A25D-08	174	169	5	140	2.873563e-02	coding only	1	28827981	...	26	127	161	9.019015e-07	4.405442e-06	5.584852e-06	-5.252988e+00	...	6	28771789	...	2.085376e-07
TCGA-CQ-A4CE-01A-11D-A25Y-08	99	90	9	64	9.090909e-02	exome+100bp flanks	2	35954526	...	24	56	87	6.675098e-07	1.557523e-06	2.419723e-06	-5.616234e+00	...	5	32222400	...	1.551716e-07
TCGA-CQ-A4CG-01A-11D-A25Y-08	100	91	9	71	9.000000e-02	exome+100bp flanks	2	35954526	...	20	64	91	5.562582e-07	1.780026e-06	2.530975e-06	-5.596712e+00	...	4	32222400	...	1.241372e-07
TCGA-CQ-A4CH-01A-11D-A25Y-08	38	33	5	23	1.315789e-01	exome+100bp flanks	2	35954526	...	10	20	32	2.781291e-07	5.562582e-07	8.900131e-07	-6.050604e+00	...	2	32222400	...	6.206862e-08
TCGA-CQ-A4CI-01A-11D-A25Y-08	128	118	10	90	7.812500e-02	exome+100bp flanks	2	35954526	...	28	81	116	7.787615e-07	2.252846e-06	3.226298e-06	-5.491296e+00	...	6	32222400	...	1.862059e-07
TCGA-CR-5243-01A-01D-1512-08	90	88	2	67	2.222222e-02	coding only	1	28827981	...	20	58	83	6.937704e-07	2.011934e-06	2.879147e-06	-5.540736e+00	...	2	28771789	...	6.951254e-08
TCGA-CR-5247-01A-01D-2012-08	95	89	6	70	6.315789e-02	exome+100bp flanks	2	35954526	...	19	58	88	5.284453e-07	1.613149e-06	2.447536e-06	-5.611271e+00	...	9	32222400	...	2.793088e-07
TCGA-CR-5248-01A-01D-2012-08	407	397	10	309	2.457002e-02	coding only	1	28827981	...	85	271	376	2.948524e-06	9.400589e-06	1.304288e-05	-4.884626e+00	...	18	28771789	...	6.256128e-07
TCGA-CR-5249-01A-01D-1512-08	67	60	7	40	1.044776e-01	exome+100bp flanks	2	35954526	...	18	36	57	5.006324e-07	1.001265e-06	1.585336e-06	-5.799879e+00	...	3	32222400	...	9.310293e-08
TCGA-CR-5250-01A-01D-1512-08	40	40	0	32	0	exome+100bp flanks	2	35954526	...	8	28	40	2.225033e-07	7.787615e-07	1.112516e-06	-5.953694e+00	...	4	32222400	...	1.241372e-07
TCGA-CR-6467-01A-11D-1870-08	67	61	6	42	8.955224e-02	exome+100bp flanks	2	35954526	...	16	36	55	4.450066e-07	1.001265e-06	1.529710e-06	-5.815391e+00	...	3	32222400	...	9.310293e-08
TCGA-CR-6470-01A-11D-1870-08	50	49	1	39	2.000000e-02	coding only	1	28827981	...	10	34	46	3.468852e-07	1.179410e-06	1.595672e-06	-5.797056e+00	...	2	28771789	...	6.951254e-08
TCGA-CR-6471-01A-11D-1870-08	168	166	2	123	1.190476e-02	coding only	1	28827981	...	43	112	162	1.491606e-06	3.885114e-06	5.619540e-06	-5.250299e+00	...	7	28771789	...	2.432939e-07
TCGA-CR-6472-01A-11D-1870-08	551	544	7	414	1.270417e-02	coding only	1	28827981	...	125	379	519	4.336065e-06	1.314695e-05	1.800334e-05	-4.744647e+00	...	10	28771789	...	3.475627e-07
TCGA-CR-6473-01A-11D-1870-08	115	110	5	85	4.347826e-02	exome+100bp flanks	2	35954526	...	23	75	103	6.396969e-07	2.085968e-06	2.864730e-06	-5.542916e+00	...	4	32222400	...	1.241372e-07
TCGA-CR-6474-01A-11D-1870-08	140	135	5	103	3.571429e-02	exome+100bp flanks	2	35954526	...	30	96	131	8.343873e-07	2.670039e-06	3.643491e-06	-5.438482e+00	...	3	32222400	...	9.310293e-08
TCGA-CR-6477-01A-11D-1870-08	111	103	8	79	7.207207e-02	exome+100bp flanks	2	35954526	...	21	62	97	5.840711e-07	1.724400e-06	2.697852e-06	-5.568982e+00	...	10	32222400	...	3.103431e-07
TCGA-CR-6478-01A-11D-1870-08	159	155	4	104	2.515723e-02	coding only	1	28827981	...	51	88	144	1.769115e-06	3.052590e-06	4.995147e-06	-5.301452e+00	...	3	28771789	...	1.042688e-07
TCGA-CR-6480-01A-11D-1870-08	144	142	2	101	1.388889e-02	coding only	1	28827981	...	41	89	134	1.422229e-06	3.087278e-06	4.648262e-06	-5.332709e+00	...	3	28771789	...	1.042688e-07
TCGA-CR-6481-01A-11D-1870-08	589	575	14	442	2.376910e-02	coding only	1	28827981	...	127	421	555	4.405442e-06	1.460387e-05	1.925213e-05	-4.715521e+00	...	3	28771789	...	1.042688e-07
TCGA-CR-6482-01A-11D-1870-08	57	57	0	40	0	coding only	1	28827981	...	17	39	56	5.897048e-07	1.352852e-06	1.942557e-06	-5.711626e+00	...	0	28771789	...	0
TCGA-CR-6484-01A-11D-1870-08	334	330	4	245	1.197605e-02	coding only	1	28827981	...	80	233	315	2.775082e-06	8.082425e-06	1.092688e-05	-4.961504e+00	...	2	28771789	...	6.951254e-08
TCGA-CR-6487-01A-11D-1870-08	159	154	5	124	3.144654e-02	exome+100bp flanks	2	35954526	...	29	114	147	8.065744e-07	3.170672e-06	4.088498e-06	-5.388436e+00	...	4	32222400	...	1.241372e-07
TCGA-CR-6488-01A-12D-2078-08	47	45	2	35	4.255319e-02	exome+100bp flanks	2	35954526	...	10	31	42	2.781291e-07	8.622002e-07	1.168142e-06	-5.932504e+00	...	1	32222400	...	3.103431e-08
TCGA-CR-6491-01A-11D-1870-08	180	177	3	125	1.666667e-02	coding only	1	28827981	...	50	111	169	1.734426e-06	3.850426e-06	5.862360e-06	-5.231928e+00	...	6	28771789	...	2.085376e-07
TCGA-CR-6492-01A-12D-2078-08	76	74	2	54	2.631579e-02	coding only	1	28827981	...	20	51	72	6.937704e-07	1.769115e-06	2.497573e-06	-5.602482e+00	...	1	28771789	...	3.475627e-08
TCGA-CR-6493-01A-11D-1870-08	47	44	3	36	6.382979e-02	exome+100bp flanks	2	35954526	...	7	31	42	1.946904e-07	8.622002e-07	1.168142e-06	-5.932504e+00	...	3	32222400	...	9.310293e-08
TCGA-CR-7364-01A-11D-2012-08	553	526	27	410	4.882459e-02	exome+100bp flanks	2	35954526	...	113	369	505	3.142859e-06	1.026296e-05	1.404552e-05	-4.852462e+00	...	17	32222400	...	5.275833e-07
TCGA-CR-7365-01A-11D-2012-08	204	199	5	152	2.450980e-02	coding only	1	28827981	...	46	131	187	1.595672e-06	4.544196e-06	6.486753e-06	-5.187973e+00	...	10	28771789	...	3.475627e-07
TCGA-CR-7367-01A-11D-2012-08	217	210	7	160	3.225806e-02	exome+100bp flanks	2	35954526	...	49	144	201	1.362833e-06	4.005059e-06	5.590395e-06	-5.252558e+00	...	6	32222400	...	1.862059e-07
TCGA-CR-7368-01A-11D-2129-08	250	246	4	188	1.600000e-02	coding only	1	28827981	...	55	170	235	1.907869e-06	5.897048e-06	8.151802e-06	-5.088746e+00	...	9	28771789	...	3.128064e-07
TCGA-CR-7369-01A-11D-2129-08	91	89	2	70	2.197802e-02	coding only	1	28827981	...	16	61	83	5.550163e-07	2.116000e-06	2.879147e-06	-5.540736e+00	...	5	28771789	...	1.737813e-07
TCGA-CR-7370-01A-11D-2129-08	657	632	25	466	3.805175e-02	exome+100bp flanks	2	35954526	...	160	413	595	4.450066e-06	1.148673e-05	1.654868e-05	-4.781237e+00	...	19	32222400	...	5.896519e-07
TCGA-CR-7371-01A-11D-2012-08	358	345	13	260	3.631285e-02	exome+100bp flanks	2	35954526	...	81	240	329	2.252846e-06	6.675098e-06	9.150447e-06	-5.038558e+00	...	6	32222400	...	1.862059e-07
TCGA-CR-7372-01A-11D-2012-08	62	62	0	47	0	coding only	1	28827981	...	15	40	60	5.203278e-07	1.387541e-06	2.081311e-06	-5.681663e+00	...	4	28771789	...	1.390251e-07
TCGA-CR-7373-01A-11D-2012-08	140	138	2	96	1.428571e-02	coding only	1	28827981	...	39	87	131	1.352852e-06	3.017901e-06	4.544196e-06	-5.342543e+00	...	5	28771789	...	1.737813e-07
TCGA-CR-7374-01A-11D-2012-08	437	421	16	331	3.661327e-02	exome+100bp flanks	2	35954526	...	84	299	398	2.336284e-06	8.316060e-06	1.106954e-05	-4.955870e+00	...	9	32222400	...	2.793088e-07
TCGA-CR-7376-01A-11D-2129-08	77	71	6	57	7.792208e-02	exome+100bp flanks	2	35954526	...	14	52	68	3.893807e-07	1.446271e-06	1.891278e-06	-5.723245e+00	...	2	32222400	...	6.206862e-08
TCGA-CR-7377-01A-11D-2012-08	156	153	3	110	1.923077e-02	coding only	1	28827981	...	40	104	149	1.387541e-06	3.607606e-06	5.168590e-06	-5.286628e+00	...	1	28771789	...	3.475627e-08
TCGA-CR-7379-01A-11D-2012-08	179	173	6	118	3.351955e-02	exome+100bp flanks	2	35954526	...	53	107	167	1.474084e-06	2.975981e-06	4.644756e-06	-5.333037e+00	...	4	32222400	...	1.241372e-07
TCGA-CR-7380-01A-11D-2012-08	118	115	3	90	2.542373e-02	coding only	1	28827981	...	25	77	111	8.672130e-07	2.671016e-06	3.850426e-06	-5.414491e+00	...	9	28771789	...	3.128064e-07
TCGA-CR-7382-01A-11D-2129-08	105	100	5	77	4.761905e-02	exome+100bp flanks	2	35954526	...	20	70	95	5.562582e-07	1.946904e-06	2.642226e-06	-5.578030e+00	...	3	32222400	...	9.310293e-08
TCGA-CR-7383-01A-11D-2129-08	156	150	6	115	3.846154e-02	exome+100bp flanks	2	35954526	...	31	97	141	8.622002e-07	2.697852e-06	3.921620e-06	-5.406534e+00	...	11	32222400	...	3.413774e-07
TCGA-CR-7385-01A-11D-2012-08	59	56	3	44	5.084746e-02	exome+100bp flanks	2	35954526	...	11	41	54	3.059420e-07	1.140329e-06	1.501897e-06	-5.823360e+00	...	2	32222400	...	6.206862e-08
TCGA-CR-7386-01A-11D-2012-08	223	221	2	162	8.968610e-03	coding only	1	28827981	...	59	154	217	2.046623e-06	5.342032e-06	7.527409e-06	-5.123354e+00	...	2	28771789	...	6.951254e-08
TCGA-CR-7388-01A-11D-2012-08	869	844	25	654	2.876870e-02	coding only	1	28827981	...	176	603	801	6.105180e-06	2.091718e-05	2.778550e-05	-4.556182e+00	...	17	28771789	...	5.908566e-07
TCGA-CR-7389-01A-11D-2012-08	132	131	1	96	7.575758e-03	coding only	1	28827981	...	35	86	127	1.214098e-06	2.983213e-06	4.405442e-06	-5.356011e+00	...	4	28771789	...	1.390251e-07
TCGA-CR-7390-01A-11D-2012-08	172	164	8	111	4.651163e-02	exome+100bp flanks	2	35954526	...	52	101	160	1.446271e-06	2.809104e-06	4.450066e-06	-5.351634e+00	...	6	32222400	...	1.862059e-07
TCGA-CR-7391-01A-11D-2012-08	14	13	1	11	7.142857e-02	exome+100bp flanks	2	35954526	...	2	9	13	5.562582e-08	2.503162e-07	3.615678e-07	-6.441810e+00	...	1	32222400	...	3.103431e-08
TCGA-CR-7392-01A-11D-2012-08	40	39	1	32	2.500000e-02	exome+100bp flanks	2	35954526	...	6	27	35	1.668775e-07	7.509486e-07	9.734519e-07	-6.011686e+00	...	2	32222400	...	6.206862e-08
TCGA-CR-7393-01A-11D-2012-08	5	4	1	3	2.000000e-01	exome+100bp flanks	2	35954526	...	1	2	5	2.781291e-08	5.562582e-08	1.390646e-07	-6.856784e+00	...	1	32222400	...	3.103431e-08
TCGA-CR-7394-01A-11D-2012-08	218	214	4	155	1.834862e-02	coding only	1	28827981	...	58	148	208	2.011934e-06	5.133901e-06	7.215212e-06	-5.141751e+00	...	0	28771789	...	0
TCGA-CR-7395-01A-11D-2012-08	210	206	4	144	1.904762e-02	coding only	1	28827981	...	58	128	194	2.011934e-06	4.440131e-06	6.729573e-06	-5.172012e+00	...	7	28771789	...	2.432939e-07
TCGA-CR-7397-01A-11D-2012-08	57	55	2	40	3.508772e-02	exome+100bp flanks	2	35954526	...	14	35	50	3.893807e-07	9.734519e-07	1.390646e-06	-5.856784e+00	...	0	32222400	...	0
TCGA-CR-7398-01A-11D-2012-08	415	398	17	298	4.096386e-02	exome+100bp flanks	2	35954526	...	97	270	386	2.697852e-06	7.509486e-06	1.073578e-05	-4.969166e+00	...	16	32222400	...	4.965490e-07
TCGA-CR-7399-01A-11D-2012-08	343	328	15	260	4.373178e-02	exome+100bp flanks	2	35954526	...	65	240	319	1.807839e-06	6.675098e-06	8.872318e-06	-5.051963e+00	...	10	32222400	...	3.103431e-07
TCGA-CR-7401-01A-11D-2012-08	111	104	7	70	6.306306e-02	exome+100bp flanks	2	35954526	...	33	68	104	9.178260e-07	1.891278e-06	2.892543e-06	-5.538720e+00	...	1	32222400	...	3.103431e-08
TCGA-CR-7402-01A-11D-2012-08	1147	1114	33	869	2.877071e-02	coding only	1	28827981	...	237	780	1059	8.221179e-06	2.705705e-05	3.673514e-05	-4.434918e+00	...	38	28771789	...	1.320738e-06
TCGA-CR-7404-01A-11D-2129-08	153	146	7	107	4.575163e-02	exome+100bp flanks	2	35954526	...	34	95	135	9.456389e-07	2.642226e-06	3.754743e-06	-5.425420e+00	...	6	32222400	...	1.862059e-07
TCGA-CV-5430-01A-02D-1683-08	188	185	3	140	1.595745e-02	coding only	1	28827981	...	42	119	177	1.456918e-06	4.127934e-06	6.139868e-06	-5.211841e+00	...	12	28771789	...	4.170752e-07
TCGA-CV-5431-01A-01D-1512-08	105	105	0	74	0	coding only	1	28827981	...	31	70	105	1.075344e-06	2.428196e-06	3.642295e-06	-5.438625e+00	...	4	28771789	...	1.390251e-07
TCGA-CV-5432-01A-02D-1683-08	337	324	13	239	3.857567e-02	exome+100bp flanks	2	35954526	...	81	220	312	2.252846e-06	6.118840e-06	8.677628e-06	-5.061599e+00	...	6	32222400	...	1.862059e-07
TCGA-CV-5434-01A-01D-1683-08	179	172	7	138	3.910615e-02	exome+100bp flanks	2	35954526	...	34	128	169	9.456389e-07	3.560052e-06	4.700382e-06	-5.327867e+00	...	6	32222400	...	1.862059e-07
TCGA-CV-5435-01A-01D-1683-08	145	137	8	100	5.517241e-02	exome+100bp flanks	2	35954526	...	33	88	130	9.178260e-07	2.447536e-06	3.615678e-06	-5.441810e+00	...	7	32222400	...	2.172402e-07
TCGA-CV-5436-01A-01D-1512-08	139	128	11	97	7.913669e-02	exome+100bp flanks	2	35954526	...	29	78	118	8.065744e-07	2.169407e-06	3.281923e-06	-5.483872e+00	...	9	32222400	...	2.793088e-07
TCGA-CV-5439-01A-01D-1683-08	133	128	5	93	3.759398e-02	exome+100bp flanks	2	35954526	...	32	84	123	8.900131e-07	2.336284e-06	3.420988e-06	-5.465848e+00	...	6	32222400	...	1.862059e-07
TCGA-CV-5440-01A-01D-1512-08	146	137	9	103	6.164384e-02	exome+100bp flanks	2	35954526	...	32	95	135	8.900131e-07	2.642226e-06	3.754743e-06	-5.425420e+00	...	6	32222400	...	1.862059e-07
TCGA-CV-5441-01A-01D-1512-08	465	446	19	339	4.086022e-02	exome+100bp flanks	2	35954526	...	98	299	422	2.725665e-06	8.316060e-06	1.173705e-05	-4.930441e+00	...	20	32222400	...	6.206862e-07
TCGA-CV-5442-01A-01D-1512-08	293	286	7	230	2.389078e-02	coding only	1	28827981	...	53	211	271	1.838492e-06	7.319278e-06	9.400589e-06	-5.026845e+00	...	5	28771789	...	1.737813e-07
TCGA-CV-5443-01A-01D-1512-08	91	75	16	51	1.758242e-01	exome+100bp flanks	2	35954526	...	24	48	79	6.675098e-07	1.335020e-06	2.197220e-06	-5.658126e+00	...	2	32222400	...	6.206862e-08
TCGA-CV-5444-01A-02D-1512-08	175	164	11	116	6.285714e-02	exome+100bp flanks	2	35954526	...	45	104	157	1.251581e-06	2.892543e-06	4.366627e-06	-5.359854e+00	...	4	32222400	...	1.241372e-07
TCGA-CV-5966-01A-11D-1683-08	136	131	5	102	3.676471e-02	exome+100bp flanks	2	35954526	...	29	95	127	8.065744e-07	2.642226e-06	3.532240e-06	-5.451950e+00	...	3	32222400	...	9.310293e-08
TCGA-CV-5970-01A-11D-1683-08	243	235	8	174	3.292181e-02	exome+100bp flanks	2	35954526	...	60	163	228	1.668775e-06	4.533504e-06	6.341344e-06	-5.197819e+00	...	4	32222400	...	1.241372e-07
TCGA-CV-5971-01A-11D-1683-08	38	35	3	21	7.894737e-02	exome+100bp flanks	2	35954526	...	13	20	34	3.615678e-07	5.562582e-07	9.456389e-07	-6.024275e+00	...	0	32222400	...	0
TCGA-CV-5973-01A-11D-1683-08	82	77	5	53	6.097561e-02	exome+100bp flanks	2	35954526	...	22	41	71	6.118840e-07	1.140329e-06	1.974717e-06	-5.704495e+00	...	8	32222400	...	2.482745e-07
TCGA-CV-5976-01A-11D-1683-08	97	93	4	68	4.123711e-02	exome+100bp flanks	2	35954526	...	24	60	89	6.675098e-07	1.668775e-06	2.475349e-06	-5.606364e+00	...	4	32222400	...	1.241372e-07
TCGA-CV-5977-01A-11D-1683-08	124	116	8	79	6.451613e-02	exome+100bp flanks	2	35954526	...	35	71	112	9.734519e-07	1.974717e-06	3.115046e-06	-5.506536e+00	...	3	32222400	...	9.310293e-08
TCGA-CV-5978-01A-11D-1683-08	222	210	12	165	5.405405e-02	exome+100bp flanks	2	35954526	...	44	155	204	1.223768e-06	4.311001e-06	5.673834e-06	-5.246123e+00	...	4	32222400	...	1.241372e-07
TCGA-CV-5979-01A-11D-1683-08	49	44	5	36	1.020408e-01	exome+100bp flanks	2	35954526	...	8	35	46	2.225033e-07	9.734519e-07	1.279394e-06	-5.892996e+00	...	0	32222400	...	0
TCGA-CV-6003-01A-11D-1683-08	136	127	9	102	6.617647e-02	exome+100bp flanks	2	35954526	...	25	86	121	6.953228e-07	2.391910e-06	3.365362e-06	-5.472968e+00	...	8	32222400	...	2.482745e-07
TCGA-CV-6433-01A-11D-1683-08	74	71	3	55	4.054054e-02	exome+100bp flanks	2	35954526	...	15	48	66	4.171937e-07	1.335020e-06	1.835652e-06	-5.736210e+00	...	3	32222400	...	9.310293e-08
TCGA-CV-6436-01A-11D-1683-08	94	91	3	70	3.191489e-02	exome+100bp flanks	2	35954526	...	21	65	89	5.840711e-07	1.807839e-06	2.475349e-06	-5.606364e+00	...	3	32222400	...	9.310293e-08
TCGA-CV-6441-01A-11D-1683-08	281	275	6	205	2.135231e-02	coding only	1	28827981	...	66	176	260	2.289442e-06	6.105180e-06	9.019015e-06	-5.044841e+00	...	14	28771789	...	4.865877e-07
TCGA-CV-6933-01A-11D-1912-08	145	138	7	106	4.827586e-02	exome+100bp flanks	2	35954526	...	32	96	132	8.900131e-07	2.670039e-06	3.671304e-06	-5.435180e+00	...	4	32222400	...	1.241372e-07
TCGA-CV-6934-01A-11D-1912-08	124	111	13	83	1.048387e-01	exome+100bp flanks	2	35954526	...	27	74	108	7.509486e-07	2.058155e-06	3.003794e-06	-5.522330e+00	...	5	32222400	...	1.551716e-07
TCGA-CV-6935-01A-11D-1912-08	269	260	9	204	3.345725e-02	exome+100bp flanks	2	35954526	...	52	177	241	1.446271e-06	4.922885e-06	6.702911e-06	-5.173737e+00	...	9	32222400	...	2.793088e-07
TCGA-CV-6936-01A-11D-1912-08	332	322	10	239	3.012048e-02	exome+100bp flanks	2	35954526	...	83	222	314	2.308472e-06	6.174466e-06	8.733254e-06	-5.058824e+00	...	7	32222400	...	2.172402e-07
TCGA-CV-6937-01A-11D-2012-08	159	158	1	120	6.289308e-03	coding only	1	28827981	...	35	107	148	1.214098e-06	3.711672e-06	5.133901e-06	-5.289553e+00	...	6	28771789	...	2.085376e-07
TCGA-CV-6938-01A-11D-1912-08	178	172	6	141	3.370787e-02	exome+100bp flanks	2	35954526	...	30	122	166	8.343873e-07	3.393175e-06	4.616943e-06	-5.335645e+00	...	11	32222400	...	3.413774e-07
TCGA-CV-6939-01A-11D-1912-08	58	56	2	44	3.448276e-02	exome+100bp flanks	2	35954526	...	12	35	55	3.337549e-07	9.734519e-07	1.529710e-06	-5.815391e+00	...	7	32222400	...	2.172402e-07
TCGA-CV-6940-01A-11D-1912-08	162	157	5	117	3.086420e-02	exome+100bp flanks	2	35954526	...	38	104	147	1.056891e-06	2.892543e-06	4.088498e-06	-5.388436e+00	...	4	32222400	...	1.241372e-07
TCGA-CV-6941-01A-11D-1912-08	176	167	9	125	5.113636e-02	exome+100bp flanks	2	35954526	...	40	113	160	1.112516e-06	3.142859e-06	4.450066e-06	-5.351634e+00	...	5	32222400	...	1.551716e-07
TCGA-CV-6942-01A-21D-2012-08	270	263	7	201	2.592593e-02	coding only	1	28827981	...	59	187	255	2.046623e-06	6.486753e-06	8.845573e-06	-5.053274e+00	...	6	28771789	...	2.085376e-07
TCGA-CV-6943-01A-11D-1912-08	80	76	4	58	5.000000e-02	exome+100bp flanks	2	35954526	...	18	49	73	5.006324e-07	1.362833e-06	2.030342e-06	-5.692431e+00	...	3	32222400	...	9.310293e-08
TCGA-CV-6945-01A-11D-1912-08	158	152	6	111	3.797468e-02	exome+100bp flanks	2	35954526	...	39	97	145	1.084703e-06	2.697852e-06	4.032872e-06	-5.394386e+00	...	8	32222400	...	2.482745e-07
TCGA-CV-6948-01A-11D-1912-08	245	238	7	179	2.857143e-02	coding only	1	28827981	...	54	158	228	1.873180e-06	5.480786e-06	7.908983e-06	-5.101879e+00	...	13	28771789	...	4.518315e-07
TCGA-CV-6950-01A-11D-1912-08	73	69	4	53	5.479452e-02	exome+100bp flanks	2	35954526	...	16	47	65	4.450066e-07	1.307207e-06	1.807839e-06	-5.742840e+00	...	1	32222400	...	3.103431e-08
TCGA-CV-6951-01A-11D-1912-08	159	156	3	120	1.886792e-02	coding only	1	28827981	...	33	104	145	1.144721e-06	3.607606e-06	5.029835e-06	-5.298446e+00	...	8	28771789	...	2.780501e-07
TCGA-CV-6952-01A-11D-1912-08	204	201	3	151	1.470588e-02	coding only	1	28827981	...	47	131	187	1.630360e-06	4.544196e-06	6.486753e-06	-5.187973e+00	...	8	28771789	...	2.780501e-07
TCGA-CV-6953-01A-11D-1912-08	129	125	4	101	3.100775e-02	exome+100bp flanks	2	35954526	...	22	97	122	6.118840e-07	2.697852e-06	3.393175e-06	-5.469394e+00	...	2	32222400	...	6.206862e-08
TCGA-CV-6954-01A-11D-1912-08	195	187	8	147	4.102564e-02	exome+100bp flanks	2	35954526	...	39	134	182	1.084703e-06	3.726930e-06	5.061950e-06	-5.295682e+00	...	6	32222400	...	1.862059e-07
TCGA-CV-6955-01A-11D-2012-08	155	153	2	114	1.290323e-02	coding only	1	28827981	...	37	102	148	1.283475e-06	3.538229e-06	5.133901e-06	-5.289553e+00	...	8	28771789	...	2.780501e-07
TCGA-CV-6956-01A-21D-2012-08	234	226	8	162	3.418803e-02	exome+100bp flanks	2	35954526	...	63	146	219	1.752213e-06	4.060685e-06	6.091027e-06	-5.215309e+00	...	7	32222400	...	2.172402e-07
TCGA-CV-6959-01A-11D-1912-08	81	76	5	55	6.172840e-02	exome+100bp flanks	2	35954526	...	21	46	73	5.840711e-07	1.279394e-06	2.030342e-06	-5.692431e+00	...	6	32222400	...	1.862059e-07
TCGA-CV-6960-01A-41D-2012-08	221	208	13	159	5.882353e-02	exome+100bp flanks	2	35954526	...	48	134	198	1.335020e-06	3.726930e-06	5.506956e-06	-5.259088e+00	...	14	32222400	...	4.344804e-07
TCGA-CV-6961-01A-21D-1912-08	719	693	26	522	3.616134e-02	exome+100bp flanks	2	35954526	...	163	484	658	4.533504e-06	1.346145e-05	1.830089e-05	-4.737528e+00	...	7	32222400	...	2.172402e-07
TCGA-CV-6962-01A-11D-1912-08	187	174	13	147	6.951872e-02	exome+100bp flanks	2	35954526	...	26	121	163	7.231357e-07	3.365362e-06	4.533504e-06	-5.343566e+00	...	14	32222400	...	4.344804e-07
TCGA-CV-7089-01A-11D-2012-08	203	196	7	152	3.448276e-02	exome+100bp flanks	2	35954526	...	43	140	194	1.195955e-06	3.893807e-06	5.395705e-06	-5.267952e+00	...	6	32222400	...	1.862059e-07
TCGA-CV-7090-01A-11D-2012-08	61	58	3	43	4.918033e-02	exome+100bp flanks	2	35954526	...	14	36	52	3.893807e-07	1.001265e-06	1.446271e-06	-5.839750e+00	...	1	32222400	...	3.103431e-08
TCGA-CV-7091-01A-11D-2012-08	164	158	6	123	3.658537e-02	exome+100bp flanks	2	35954526	...	33	112	158	9.178260e-07	3.115046e-06	4.394440e-06	-5.357096e+00	...	9	32222400	...	2.793088e-07
TCGA-CV-7095-01A-21D-2012-08	287	283	4	216	1.393728e-02	coding only	1	28827981	...	63	202	272	2.185377e-06	7.007081e-06	9.435277e-06	-5.025245e+00	...	5	28771789	...	1.737813e-07
TCGA-CV-7097-01A-11D-2012-08	124	116	8	86	6.451613e-02	exome+100bp flanks	2	35954526	...	28	72	109	7.787615e-07	2.002530e-06	3.031607e-06	-5.518327e+00	...	9	32222400	...	2.793088e-07
TCGA-CV-7099-01A-41D-2012-08	360	351	9	259	2.500000e-02	coding only	1	28827981	...	88	237	337	3.052590e-06	8.221179e-06	1.169003e-05	-4.932184e+00	...	10	28771789	...	3.475627e-07
TCGA-CV-7100-01A-11D-2012-08	22	22	0	18	0	exome+100bp flanks	2	35954526	...	4	10	19	1.112516e-07	2.781291e-07	5.284453e-07	-6.277000e+00	...	5	32222400	...	1.551716e-07
TCGA-CV-7101-01A-11D-2012-08	244	235	9	182	3.688525e-02	exome+100bp flanks	2	35954526	...	53	165	229	1.474084e-06	4.589130e-06	6.369156e-06	-5.195918e+00	...	11	32222400	...	3.413774e-07
TCGA-CV-7102-01A-11D-2012-08	170	166	4	131	2.352941e-02	coding only	1	28827981	...	35	121	159	1.214098e-06	4.197311e-06	5.515475e-06	-5.258417e+00	...	3	28771789	...	1.042688e-07
TCGA-CV-7103-01A-21D-2012-08	62	56	6	42	9.677419e-02	exome+100bp flanks	2	35954526	...	14	35	57	3.893807e-07	9.734519e-07	1.585336e-06	-5.799879e+00	...	6	32222400	...	1.862059e-07
TCGA-CV-7104-01A-11D-2012-08	128	121	7	95	5.468750e-02	exome+100bp flanks	2	35954526	...	26	82	120	7.231357e-07	2.280659e-06	3.337549e-06	-5.476572e+00	...	9	32222400	...	2.793088e-07
TCGA-CV-7177-01A-11D-2012-08	149	145	4	111	2.684564e-02	coding only	1	28827981	...	34	100	144	1.179410e-06	3.468852e-06	4.995147e-06	-5.301452e+00	...	9	28771789	...	3.128064e-07
TCGA-CV-7178-01A-21D-2012-08	147	141	6	107	4.081633e-02	exome+100bp flanks	2	35954526	...	33	98	138	9.178260e-07	2.725665e-06	3.838182e-06	-5.415874e+00	...	5	32222400	...	1.551716e-07
TCGA-CV-7180-01A-11D-2012-08	80	78	2	58	2.500000e-02	coding only	1	28827981	...	19	53	75	6.590819e-07	1.838492e-06	2.601639e-06	-5.584753e+00	...	2	28771789	...	6.951254e-08
TCGA-CV-7183-01A-11D-2012-08	82	81	1	63	1.219512e-02	coding only	1	28827981	...	18	50	77	6.243934e-07	1.734426e-06	2.671016e-06	-5.573324e+00	...	9	28771789	...	3.128064e-07
TCGA-CV-7235-01A-11D-2012-08	165	161	4	118	2.424242e-02	coding only	1	28827981	...	41	105	153	1.422229e-06	3.642295e-06	5.307344e-06	-5.275123e+00	...	5	28771789	...	1.737813e-07
TCGA-CV-7236-01A-11D-2012-08	66	65	1	43	1.515152e-02	coding only	1	28827981	...	21	34	62	7.284589e-07	1.179410e-06	2.150688e-06	-5.667423e+00	...	7	28771789	...	2.432939e-07
TCGA-CV-7238-01A-11D-2012-08	85	79	6	58	7.058824e-02	exome+100bp flanks	2	35954526	...	20	49	72	5.562582e-07	1.362833e-06	2.002530e-06	-5.698421e+00	...	2	32222400	...	6.206862e-08
TCGA-CV-7242-01A-11D-2012-08	369	347	22	279	5.962060e-02	exome+100bp flanks	2	35954526	...	66	258	338	1.835652e-06	7.175731e-06	9.400764e-06	-5.026837e+00	...	10	32222400	...	3.103431e-07
TCGA-CV-7243-01A-11D-2012-08	92	88	4	67	4.347826e-02	exome+100bp flanks	2	35954526	...	19	53	80	5.284453e-07	1.474084e-06	2.225033e-06	-5.652664e+00	...	7	32222400	...	2.172402e-07
TCGA-CV-7245-01A-11D-2012-08	607	585	22	448	3.624382e-02	exome+100bp flanks	2	35954526	...	130	403	554	3.615678e-06	1.120860e-05	1.540835e-05	-4.812244e+00	...	13	32222400	...	4.034460e-07
TCGA-CV-7247-01A-11D-2012-08	92	85	7	67	7.608696e-02	exome+100bp flanks	2	35954526	...	18	58	84	5.006324e-07	1.613149e-06	2.336284e-06	-5.631474e+00	...	7	32222400	...	2.172402e-07
TCGA-CV-7248-01A-11D-2012-08	355	337	18	257	5.070423e-02	exome+100bp flanks	2	35954526	...	77	236	327	2.141594e-06	6.563847e-06	9.094822e-06	-5.041206e+00	...	9	32222400	...	2.793088e-07
TCGA-CV-7250-01A-11D-2012-08	254	245	9	178	3.543307e-02	exome+100bp flanks	2	35954526	...	66	156	241	1.835652e-06	4.338814e-06	6.702911e-06	-5.173737e+00	...	15	32222400	...	4.655147e-07
TCGA-CV-7252-01A-11D-2012-08	277	270	7	198	2.527076e-02	coding only	1	28827981	...	68	170	254	2.358819e-06	5.897048e-06	8.810884e-06	-5.054981e+00	...	12	28771789	...	4.170752e-07
TCGA-CV-7253-01A-11D-2012-08	229	219	10	176	4.366812e-02	exome+100bp flanks	2	35954526	...	42	149	208	1.168142e-06	4.144124e-06	5.785085e-06	-5.237690e+00	...	14	32222400	...	4.344804e-07
TCGA-CV-7254-01A-11D-2012-08	310	300	10	232	3.225806e-02	exome+100bp flanks	2	35954526	...	65	212	293	1.807839e-06	5.896337e-06	8.149183e-06	-5.088886e+00	...	13	32222400	...	4.034460e-07
TCGA-CV-7255-01A-11D-2012-08	134	131	3	103	2.238806e-02	coding only	1	28827981	...	27	84	126	9.365900e-07	2.913836e-06	4.370754e-06	-5.359444e+00	...	15	28771789	...	5.213440e-07
TCGA-CV-7261-01A-11D-2012-08	140	136	4	108	2.857143e-02	coding only	1	28827981	...	27	102	131	9.365900e-07	3.538229e-06	4.544196e-06	-5.342543e+00	...	2	28771789	...	6.951254e-08
TCGA-CV-7263-01A-11D-2012-08	131	129	2	107	1.526718e-02	coding only	1	28827981	...	19	97	120	6.590819e-07	3.364786e-06	4.162622e-06	-5.380633e+00	...	3	28771789	...	1.042688e-07
TCGA-CV-7406-01A-11D-2078-08	240	233	7	169	2.916667e-02	coding only	1	28827981	...	62	151	227	2.150688e-06	5.237967e-06	7.874294e-06	-5.103788e+00	...	11	28771789	...	3.823189e-07
TCGA-CV-7407-01A-11D-2078-08	160	153	7	112	4.375000e-02	exome+100bp flanks	2	35954526	...	38	104	150	1.056891e-06	2.892543e-06	4.171937e-06	-5.379662e+00	...	5	32222400	...	1.551716e-07
TCGA-CV-7409-01A-31D-2229-08	375	358	17	284	4.533333e-02	exome+100bp flanks	2	35954526	...	73	241	337	2.030342e-06	6.702911e-06	9.372951e-06	-5.028124e+00	...	21	32222400	...	6.517205e-07
TCGA-CV-7410-01A-21D-2078-08	53	53	0	40	0	coding only	1	28827981	...	13	32	48	4.509508e-07	1.110033e-06	1.665049e-06	-5.778573e+00	...	3	28771789	...	1.042688e-07
TCGA-CV-7411-01A-11D-2078-08	142	140	2	103	1.408451e-02	coding only	1	28827981	...	35	92	133	1.214098e-06	3.191344e-06	4.613573e-06	-5.335963e+00	...	5	28771789	...	1.737813e-07
TCGA-CV-7413-01A-11D-2078-08	94	87	7	65	7.446809e-02	exome+100bp flanks	2	35954526	...	22	59	86	6.118840e-07	1.640962e-06	2.391910e-06	-5.621255e+00	...	2	32222400	...	6.206862e-08
TCGA-CV-7414-01A-11D-2078-08	320	315	5	231	1.562500e-02	coding only	1	28827981	...	79	221	303	2.740393e-06	7.666163e-06	1.051062e-05	-4.978372e+00	...	2	28771789	...	6.951254e-08
TCGA-CV-7415-01A-11D-2078-08	99	98	1	70	1.010101e-02	coding only	1	28827981	...	27	60	92	9.365900e-07	2.081311e-06	3.191344e-06	-5.496026e+00	...	2	28771789	...	6.951254e-08
TCGA-CV-7416-01A-11D-2078-08	96	92	4	69	4.166667e-02	exome+100bp flanks	2	35954526	...	23	59	90	6.396969e-07	1.640962e-06	2.503162e-06	-5.601511e+00	...	6	32222400	...	1.862059e-07
TCGA-CV-7418-01A-11D-2078-08	205	202	3	156	1.463415e-02	coding only	1	28827981	...	45	130	189	1.560983e-06	4.509508e-06	6.556130e-06	-5.183352e+00	...	14	28771789	...	4.865877e-07
TCGA-CV-7421-01A-11D-2078-08	88	85	3	56	3.409091e-02	exome+100bp flanks	2	35954526	...	28	49	83	7.787615e-07	1.362833e-06	2.308472e-06	-5.636675e+00	...	5	32222400	...	1.551716e-07
TCGA-CV-7422-01A-21D-2078-08	168	161	7	118	4.166667e-02	exome+100bp flanks	2	35954526	...	41	108	154	1.140329e-06	3.003794e-06	4.283188e-06	-5.368233e+00	...	4	32222400	...	1.241372e-07
TCGA-CV-7423-01A-11D-2078-08	104	97	7	63	6.730769e-02	exome+100bp flanks	2	35954526	...	32	50	89	8.900131e-07	1.390646e-06	2.475349e-06	-5.606364e+00	...	5	32222400	...	1.551716e-07
TCGA-CV-7424-01A-11D-2078-08	238	230	8	173	3.361345e-02	exome+100bp flanks	2	35954526	...	53	157	220	1.474084e-06	4.366627e-06	6.118840e-06	-5.213331e+00	...	5	32222400	...	1.551716e-07
TCGA-CV-7425-01A-11D-2078-08	149	141	8	102	5.369128e-02	exome+100bp flanks	2	35954526	...	39	95	140	1.084703e-06	2.642226e-06	3.893807e-06	-5.409626e+00	...	4	32222400	...	1.241372e-07
TCGA-CV-7427-01A-11D-2078-08	527	514	13	393	2.466793e-02	coding only	1	28827981	...	115	372	496	3.989180e-06	1.290413e-05	1.720551e-05	-4.764333e+00	...	6	28771789	...	2.085376e-07
TCGA-CV-7429-01A-11D-2129-08	65	64	1	47	1.538462e-02	coding only	1	28827981	...	14	40	58	4.856393e-07	1.387541e-06	2.011934e-06	-5.696386e+00	...	4	28771789	...	1.390251e-07
TCGA-CV-7430-01A-11D-2129-08	133	124	9	94	6.766917e-02	exome+100bp flanks	2	35954526	...	30	85	123	8.343873e-07	2.364097e-06	3.420988e-06	-5.465848e+00	...	5	32222400	...	1.551716e-07
TCGA-CV-7432-01A-11D-2129-08	193	188	5	141	2.590674e-02	coding only	1	28827981	...	44	123	182	1.526295e-06	4.266688e-06	6.313311e-06	-5.199743e+00	...	12	28771789	...	4.170752e-07
TCGA-CV-7433-01A-11D-2129-08	148	143	5	108	3.378378e-02	exome+100bp flanks	2	35954526	...	34	99	140	9.456389e-07	2.753478e-06	3.893807e-06	-5.409626e+00	...	5	32222400	...	1.551716e-07
TCGA-CV-7434-01A-11D-2129-08	114	111	3	86	2.631579e-02	coding only	1	28827981	...	25	78	109	8.672130e-07	2.705705e-06	3.781049e-06	-5.422388e+00	...	5	28771789	...	1.737813e-07
TCGA-CV-7435-01A-11D-2129-08	98	96	2	76	2.040816e-02	coding only	1	28827981	...	19	62	89	6.590819e-07	2.150688e-06	3.087278e-06	-5.510424e+00	...	7	28771789	...	2.432939e-07
TCGA-CV-7437-01A-21D-2129-08	170	166	4	122	2.352941e-02	coding only	1	28827981	...	43	106	159	1.491606e-06	3.676983e-06	5.515475e-06	-5.258417e+00	...	10	28771789	...	3.475627e-07
TCGA-CV-7438-01A-21D-2129-08	121	118	3	88	2.479339e-02	coding only	1	28827981	...	29	80	117	1.005967e-06	2.775082e-06	4.058557e-06	-5.391628e+00	...	6	28771789	...	2.085376e-07
TCGA-CV-7440-01A-11D-2129-08	261	249	12	206	4.597701e-02	exome+100bp flanks	2	35954526	...	40	176	237	1.112516e-06	4.895072e-06	6.591660e-06	-5.181005e+00	...	19	32222400	...	5.896519e-07
TCGA-CV-7446-01A-11D-2229-08	180	173	7	134	3.888889e-02	exome+100bp flanks	2	35954526	...	39	115	171	1.084703e-06	3.198485e-06	4.756008e-06	-5.322757e+00	...	14	32222400	...	4.344804e-07
TCGA-CV-7568-01A-11D-2229-08	2937	2867	70	1919	2.383384e-02	coding only	1	28827981	...	899	1841	2762	3.118498e-05	6.386157e-05	9.580969e-05	-4.018591e+00	...	3	28771789	...	1.042688e-07
TCGA-CV-A45O-01A-21D-A24D-08	182	179	3	147	1.648352e-02	coding only	1	28827981	...	30	138	168	1.040656e-06	4.787016e-06	5.827671e-06	-5.234505e+00	...	0	28771789	...	0
TCGA-CV-A45P-01A-11D-A24D-08	201	190	11	140	5.472637e-02	exome+100bp flanks	2	35954526	...	42	131	175	1.168142e-06	3.643491e-06	4.867259e-06	-5.312716e+00	...	1	32222400	...	3.103431e-08
TCGA-CV-A45Q-01A-11D-A24D-08	349	337	12	250	3.438395e-02	exome+100bp flanks	2	35954526	...	84	227	320	2.336284e-06	6.313531e-06	8.900131e-06	-5.050604e+00	...	4	32222400	...	1.241372e-07
TCGA-CV-A45R-01A-11D-A24D-08	110	105	5	79	4.545455e-02	exome+100bp flanks	2	35954526	...	25	76	104	6.953228e-07	2.113781e-06	2.892543e-06	-5.538720e+00	...	2	32222400	...	6.206862e-08
TCGA-CV-A45T-01A-11D-A24D-08	21	18	3	13	1.428571e-01	exome+100bp flanks	2	35954526	...	5	11	17	1.390646e-07	3.059420e-07	4.728195e-07	-6.325305e+00	...	0	32222400	...	0
TCGA-CV-A45U-01A-12D-A24D-08	252	249	3	175	1.190476e-02	coding only	1	28827981	...	69	156	235	2.393508e-06	5.411409e-06	8.151802e-06	-5.088746e+00	...	7	28771789	...	2.432939e-07
TCGA-CV-A45V-01A-21D-A25D-08	132	130	2	97	1.515152e-02	coding only	1	28827981	...	33	84	123	1.144721e-06	2.913836e-06	4.266688e-06	-5.369909e+00	...	6	28771789	...	2.085376e-07
TCGA-CV-A45W-01A-11D-A25D-08	748	708	40	565	5.347594e-02	exome+100bp flanks	2	35954526	...	137	505	676	3.810369e-06	1.404552e-05	1.880153e-05	-4.725807e+00	...	27	32222400	...	8.379264e-07
TCGA-CV-A45X-01A-21D-A25D-08	138	133	5	91	3.623188e-02	exome+100bp flanks	2	35954526	...	39	84	126	1.084703e-06	2.336284e-06	3.504427e-06	-5.455383e+00	...	3	32222400	...	9.310293e-08
TCGA-CV-A45Y-01A-11D-A25D-08	92	91	1	67	1.086957e-02	coding only	1	28827981	...	23	63	88	7.978360e-07	2.185377e-06	3.052590e-06	-5.515332e+00	...	2	28771789	...	6.951254e-08
TCGA-CV-A45Z-01A-21D-A25D-08	858	830	28	640	3.263403e-02	exome+100bp flanks	2	35954526	...	176	595	799	4.895072e-06	1.654868e-05	2.222252e-05	-4.653207e+00	...	20	32222400	...	6.206862e-07
TCGA-CV-A460-01A-21D-A25D-08	82	79	3	64	3.658537e-02	exome+100bp flanks	2	35954526	...	13	58	74	3.615678e-07	1.613149e-06	2.058155e-06	-5.686522e+00	...	3	32222400	...	9.310293e-08
TCGA-CV-A461-01A-41D-A25Y-08	715	697	18	531	2.517483e-02	coding only	1	28827981	...	158	462	657	5.480786e-06	1.602610e-05	2.279036e-05	-4.642249e+00	...	33	28771789	...	1.146957e-06
TCGA-CV-A463-01A-11D-A25Y-08	262	254	8	188	3.053435e-02	exome+100bp flanks	2	35954526	...	66	177	248	1.835652e-06	4.922885e-06	6.897602e-06	-5.161302e+00	...	2	32222400	...	6.206862e-08
TCGA-CV-A464-01A-11D-A25Y-08	37	35	2	20	5.405405e-02	exome+100bp flanks	2	35954526	...	15	16	32	4.171937e-07	4.450066e-07	8.900131e-07	-6.050604e+00	...	1	32222400	...	3.103431e-08
TCGA-CV-A465-01A-11D-A25Y-08	50	47	3	37	6.000000e-02	exome+100bp flanks	2	35954526	...	9	29	43	2.503162e-07	8.065744e-07	1.195955e-06	-5.922285e+00	...	5	32222400	...	1.551716e-07
TCGA-CV-A468-01A-11D-A25Y-08	647	632	15	423	2.318393e-02	coding only	1	28827981	...	200	395	604	6.937704e-06	1.370197e-05	2.095187e-05	-4.678777e+00	...	6	28771789	...	2.085376e-07
TCGA-CV-A6JD-01A-11D-A31L-08	112	110	2	86	1.785714e-02	coding only	1	28827981	...	22	73	103	7.631474e-07	2.532262e-06	3.572918e-06	-5.446977e+00	...	8	28771789	...	2.780501e-07
TCGA-CV-A6JE-01A-11D-A31L-08	167	160	7	124	4.191617e-02	exome+100bp flanks	2	35954526	...	34	114	158	9.456389e-07	3.170672e-06	4.394440e-06	-5.357096e+00	...	7	32222400	...	2.172402e-07
TCGA-CV-A6JM-01A-11D-A31L-08	352	341	11	230	3.125000e-02	exome+100bp flanks	2	35954526	...	105	205	321	2.920356e-06	5.701647e-06	8.927944e-06	-5.049249e+00	...	9	32222400	...	2.793088e-07
TCGA-CV-A6JN-01A-11D-A31L-08	95	93	2	72	2.105263e-02	coding only	1	28827981	...	20	64	88	6.937704e-07	2.220065e-06	3.052590e-06	-5.515332e+00	...	2	28771789	...	6.951254e-08
TCGA-CV-A6JO-01B-11D-A34J-08	96	94	2	72	2.083333e-02	coding only	1	28827981	...	21	59	87	7.284589e-07	2.046623e-06	3.017901e-06	-5.520295e+00	...	6	28771789	...	2.085376e-07
TCGA-CV-A6JT-01A-11D-A31L-08	69	67	2	50	2.898551e-02	coding only	1	28827981	...	15	46	62	5.203278e-07	1.595672e-06	2.150688e-06	-5.667423e+00	...	1	28771789	...	3.475627e-08
TCGA-CV-A6JU-01A-11D-A31L-08	175	165	10	122	5.714286e-02	exome+100bp flanks	2	35954526	...	41	103	162	1.140329e-06	2.864730e-06	4.505691e-06	-5.346239e+00	...	15	32222400	...	4.655147e-07
TCGA-CV-A6JY-01A-11D-A31L-08	116	111	5	89	4.310345e-02	exome+100bp flanks	2	35954526	...	20	83	106	5.562582e-07	2.308472e-06	2.948168e-06	-5.530448e+00	...	3	32222400	...	9.310293e-08
TCGA-CV-A6JZ-01A-11D-A31L-08	141	137	4	101	2.836879e-02	coding only	1	28827981	...	35	89	131	1.214098e-06	3.087278e-06	4.544196e-06	-5.342543e+00	...	6	28771789	...	2.085376e-07
TCGA-CV-A6K0-01B-21D-A31L-08	35	32	3	22	8.571429e-02	exome+100bp flanks	2	35954526	...	9	20	31	2.503162e-07	5.562582e-07	8.622002e-07	-6.064392e+00	...	1	32222400	...	3.103431e-08
TCGA-CV-A6K1-01A-11D-A31L-08	638	606	32	462	5.015674e-02	exome+100bp flanks	2	35954526	...	135	360	578	3.754743e-06	1.001265e-05	1.607586e-05	-4.793826e+00	...	80	32222400	...	2.482745e-06
TCGA-CV-A6K2-01A-11D-A31L-08	850	835	15	602	1.764706e-02	coding only	1	28827981	...	222	563	793	7.700851e-06	1.952964e-05	2.750800e-05	-4.560541e+00	...	7	28771789	...	2.432939e-07
TCGA-CX-7082-01A-11D-2012-08	119	113	6	84	5.042017e-02	exome+100bp flanks	2	35954526	...	28	76	109	7.787615e-07	2.113781e-06	3.031607e-06	-5.518327e+00	...	5	32222400	...	1.551716e-07
TCGA-CX-7085-01A-21D-2012-08	181	175	6	142	3.314917e-02	exome+100bp flanks	2	35954526	...	32	132	166	8.900131e-07	3.671304e-06	4.616943e-06	-5.335645e+00	...	1	32222400	...	3.103431e-08
TCGA-CX-7086-01A-11D-2078-08	285	275	10	212	3.508772e-02	exome+100bp flanks	2	35954526	...	60	188	261	1.668775e-06	5.228827e-06	7.259170e-06	-5.139113e+00	...	8	32222400	...	2.482745e-07
TCGA-CX-7219-01A-11D-2012-08	140	136	4	106	2.857143e-02	coding only	1	28827981	...	29	93	128	1.005967e-06	3.226032e-06	4.440131e-06	-5.352604e+00	...	5	28771789	...	1.737813e-07
TCGA-CX-A4AQ-01A-11D-A25D-08	123	116	7	90	5.691057e-02	exome+100bp flanks	2	35954526	...	23	80	113	6.396969e-07	2.225033e-06	3.142859e-06	-5.502675e+00	...	9	32222400	...	2.793088e-07
TCGA-D6-6515-01A-21D-1870-08	74	72	2	53	2.702703e-02	coding only	1	28827981	...	18	46	67	6.243934e-07	1.595672e-06	2.324131e-06	-5.633739e+00	...	2	28771789	...	6.951254e-08
TCGA-D6-6516-01A-11D-1870-08	2389	2309	80	1528	3.348681e-02	exome+100bp flanks	2	35954526	...	746	1446	2224	2.074843e-05	4.021747e-05	6.185591e-05	-4.208619e+00	...	8	32222400	...	2.482745e-07
TCGA-D6-6517-01A-11D-1870-08	88	84	4	65	4.545455e-02	exome+100bp flanks	2	35954526	...	18	54	79	5.006324e-07	1.501897e-06	2.197220e-06	-5.658126e+00	...	6	32222400	...	1.862059e-07
TCGA-D6-6823-01A-11D-1912-08	121	116	5	95	4.132231e-02	exome+100bp flanks	2	35954526	...	19	83	107	5.284453e-07	2.308472e-06	2.975981e-06	-5.526370e+00	...	4	32222400	...	1.241372e-07
TCGA-D6-6824-01A-11D-1912-08	78	75	3	61	3.846154e-02	exome+100bp flanks	2	35954526	...	13	54	69	3.615678e-07	1.501897e-06	1.919091e-06	-5.716904e+00	...	2	32222400	...	6.206862e-08
TCGA-D6-6825-01A-21D-1912-08	87	84	3	60	3.448276e-02	exome+100bp flanks	2	35954526	...	22	50	76	6.118840e-07	1.390646e-06	2.113781e-06	-5.674940e+00	...	4	32222400	...	1.241372e-07
TCGA-D6-6826-01A-11D-1912-08	122	117	5	91	4.098361e-02	exome+100bp flanks	2	35954526	...	24	84	114	6.675098e-07	2.336284e-06	3.170672e-06	-5.498849e+00	...	5	32222400	...	1.551716e-07
TCGA-D6-6827-01A-11D-1912-08	20	19	1	13	5.000000e-02	exome+100bp flanks	2	35954526	...	6	10	19	1.668775e-07	2.781291e-07	5.284453e-07	-6.277000e+00	...	3	32222400	...	9.310293e-08
TCGA-D6-8568-01A-11D-2394-08	125	121	4	100	3.200000e-02	exome+100bp flanks	2	35954526	...	20	83	114	5.562582e-07	2.308472e-06	3.170672e-06	-5.498849e+00	...	10	32222400	...	3.103431e-07
TCGA-D6-8569-01A-11D-2394-08	160	153	7	111	4.375000e-02	exome+100bp flanks	2	35954526	...	40	103	149	1.112516e-06	2.864730e-06	4.144124e-06	-5.382567e+00	...	5	32222400	...	1.551716e-07
TCGA-D6-A4Z9-01A-11D-A25D-08	113	108	5	79	4.424779e-02	exome+100bp flanks	2	35954526	...	28	68	100	7.787615e-07	1.891278e-06	2.781291e-06	-5.555754e+00	...	4	32222400	...	1.241372e-07
TCGA-D6-A4ZB-01A-11D-A25D-08	224	220	4	172	1.785714e-02	coding only	1	28827981	...	47	162	213	1.630360e-06	5.619540e-06	7.388655e-06	-5.131435e+00	...	2	28771789	...	6.951254e-08
TCGA-D6-A6EK-01A-11D-A31L-08	207	196	11	154	5.314010e-02	exome+100bp flanks	2	35954526	...	41	134	188	1.140329e-06	3.726930e-06	5.228827e-06	-5.281596e+00	...	12	32222400	...	3.724117e-07
TCGA-D6-A6EM-01A-21D-A31L-08	118	117	1	94	8.474576e-03	coding only	1	28827981	...	23	81	110	7.978360e-07	2.809770e-06	3.815737e-06	-5.418422e+00	...	6	28771789	...	2.085376e-07
TCGA-D6-A6EN-01A-11D-A31L-08	131	127	4	95	3.053435e-02	exome+100bp flanks	2	35954526	...	31	82	122	8.622002e-07	2.280659e-06	3.393175e-06	-5.469394e+00	...	8	32222400	...	2.482745e-07
TCGA-D6-A6EO-01A-11D-A31L-08	106	100	6	82	5.660377e-02	exome+100bp flanks	2	35954526	...	17	73	97	4.728195e-07	2.030342e-06	2.697852e-06	-5.568982e+00	...	5	32222400	...	1.551716e-07
TCGA-D6-A6EP-01A-11D-A31L-08	146	142	4	111	2.739726e-02	coding only	1	28827981	...	30	94	130	1.040656e-06	3.260721e-06	4.509508e-06	-5.345871e+00	...	4	28771789	...	1.390251e-07
TCGA-D6-A6EQ-01A-11D-A31L-08	115	107	8	80	6.956522e-02	exome+100bp flanks	2	35954526	...	26	73	106	7.231357e-07	2.030342e-06	2.948168e-06	-5.530448e+00	...	4	32222400	...	1.241372e-07
TCGA-D6-A6ES-01A-12D-A31L-08	243	234	9	176	3.703704e-02	exome+100bp flanks	2	35954526	...	56	158	223	1.557523e-06	4.394440e-06	6.202279e-06	-5.207449e+00	...	5	32222400	...	1.551716e-07
TCGA-D6-A74Q-01A-11D-A34J-08	533	513	20	376	3.752345e-02	exome+100bp flanks	2	35954526	...	132	349	496	3.671304e-06	9.706706e-06	1.379520e-05	-4.860272e+00	...	11	32222400	...	3.413774e-07
TCGA-DQ-5624-01A-01D-1870-08	129	124	5	94	3.875969e-02	exome+100bp flanks	2	35954526	...	27	87	116	7.509486e-07	2.419723e-06	3.226298e-06	-5.491296e+00	...	1	32222400	...	3.103431e-08
TCGA-DQ-5625-01A-01D-1870-08	237	227	10	180	4.219409e-02	exome+100bp flanks	2	35954526	...	45	157	214	1.251581e-06	4.366627e-06	5.951963e-06	-5.225340e+00	...	9	32222400	...	2.793088e-07
TCGA-DQ-5629-01A-01D-1870-08	401	385	16	286	3.990025e-02	exome+100bp flanks	2	35954526	...	92	262	372	2.558788e-06	7.286982e-06	1.034640e-05	-4.985211e+00	...	14	32222400	...	4.344804e-07
TCGA-DQ-5630-01A-01D-1870-08	98	93	5	72	5.102041e-02	exome+100bp flanks	2	35954526	...	18	67	90	5.006324e-07	1.863465e-06	2.503162e-06	-5.601511e+00	...	4	32222400	...	1.241372e-07
TCGA-DQ-5631-01A-01D-1870-08	118	115	3	82	2.542373e-02	coding only	1	28827981	...	31	72	108	1.075344e-06	2.497573e-06	3.746360e-06	-5.426390e+00	...	4	28771789	...	1.390251e-07
TCGA-DQ-7588-01A-11D-2078-08	132	124	8	95	6.060606e-02	exome+100bp flanks	2	35954526	...	28	85	120	7.787615e-07	2.364097e-06	3.337549e-06	-5.476572e+00	...	6	32222400	...	1.862059e-07
TCGA-DQ-7589-01A-11D-2229-08	426	405	21	307	4.929577e-02	exome+100bp flanks	2	35954526	...	96	277	386	2.670039e-06	7.704176e-06	1.073578e-05	-4.969166e+00	...	9	32222400	...	2.793088e-07
TCGA-DQ-7590-01A-11D-2229-08	60	55	5	38	8.333333e-02	exome+100bp flanks	2	35954526	...	16	37	54	4.450066e-07	1.029078e-06	1.501897e-06	-5.823360e+00	...	0	32222400	...	0
TCGA-DQ-7591-01A-11D-2078-08	47	44	3	34	6.382979e-02	exome+100bp flanks	2	35954526	...	8	31	41	2.225033e-07	8.622002e-07	1.140329e-06	-5.942970e+00	...	2	32222400	...	6.206862e-08
TCGA-DQ-7592-01A-11D-2078-08	99	91	8	66	8.080808e-02	exome+100bp flanks	2	35954526	...	25	54	86	6.953228e-07	1.501897e-06	2.391910e-06	-5.621255e+00	...	6	32222400	...	1.862059e-07
TCGA-DQ-7593-01A-11D-2229-08	44	38	6	31	1.363636e-01	exome+100bp flanks	2	35954526	...	6	21	36	1.668775e-07	5.840711e-07	1.001265e-06	-5.999451e+00	...	7	32222400	...	2.172402e-07
TCGA-DQ-7594-01A-11D-2229-08	409	392	17	266	4.156479e-02	exome+100bp flanks	2	35954526	...	123	252	386	3.420988e-06	7.008853e-06	1.073578e-05	-4.969166e+00	...	2	32222400	...	6.206862e-08
TCGA-DQ-7595-01A-11D-2229-08	417	394	23	308	5.515588e-02	exome+100bp flanks	2	35954526	...	82	268	376	2.280659e-06	7.453860e-06	1.045765e-05	-4.980566e+00	...	21	32222400	...	6.517205e-07
TCGA-DQ-7596-01A-11D-2229-08	41	39	2	33	4.878049e-02	exome+100bp flanks	2	35954526	...	5	31	38	1.390646e-07	8.622002e-07	1.056891e-06	-5.975970e+00	...	2	32222400	...	6.206862e-08
TCGA-F7-7848-01A-11D-2129-08	394	375	19	277	4.822335e-02	exome+100bp flanks	2	35954526	...	96	250	363	2.670039e-06	6.953228e-06	1.009609e-05	-4.995847e+00	...	15	32222400	...	4.655147e-07
TCGA-F7-8489-01A-31D-2394-08	176	165	11	123	6.250000e-02	exome+100bp flanks	2	35954526	...	42	113	163	1.168142e-06	3.142859e-06	4.533504e-06	-5.343566e+00	...	5	32222400	...	1.551716e-07
TCGA-F7-A50G-01A-11D-A25Y-08	122	115	7	85	5.737705e-02	exome+100bp flanks	2	35954526	...	29	82	114	8.065744e-07	2.280659e-06	3.170672e-06	-5.498849e+00	...	2	32222400	...	6.206862e-08
TCGA-F7-A50I-01A-11D-A28R-08	181	176	5	136	2.762431e-02	coding only	1	28827981	...	39	126	174	1.352852e-06	4.370754e-06	6.035803e-06	-5.219265e+00	...	8	28771789	...	2.780501e-07
TCGA-F7-A50J-01A-21D-A28R-08	221	212	9	154	4.072398e-02	exome+100bp flanks	2	35954526	...	56	133	201	1.557523e-06	3.699117e-06	5.590395e-06	-5.252558e+00	...	10	32222400	...	3.103431e-07
TCGA-F7-A61S-01A-11D-A28R-08	149	143	6	107	4.026846e-02	exome+100bp flanks	2	35954526	...	32	89	133	8.900131e-07	2.475349e-06	3.699117e-06	-5.431902e+00	...	9	32222400	...	2.793088e-07
TCGA-F7-A61V-01A-11D-A28R-08	121	120	1	96	8.264463e-03	coding only	1	28827981	...	23	86	115	7.978360e-07	2.983213e-06	3.989180e-06	-5.399116e+00	...	6	28771789	...	2.085376e-07
TCGA-F7-A61W-01A-11D-A28R-08	85	81	4	61	4.705882e-02	exome+100bp flanks	2	35954526	...	19	56	78	5.284453e-07	1.557523e-06	2.169407e-06	-5.663659e+00	...	2	32222400	...	6.206862e-08
TCGA-F7-A620-01A-11D-A28R-08	94	86	8	55	8.510638e-02	exome+100bp flanks	2	35954526	...	30	45	84	8.343873e-07	1.251581e-06	2.336284e-06	-5.631474e+00	...	6	32222400	...	1.862059e-07
TCGA-F7-A622-01A-11D-A28R-08	85	82	3	63	3.529412e-02	exome+100bp flanks	2	35954526	...	18	49	80	5.006324e-07	1.362833e-06	2.225033e-06	-5.652664e+00	...	11	32222400	...	3.413774e-07
TCGA-F7-A623-01A-11D-A28R-08	248	236	12	168	4.838710e-02	exome+100bp flanks	2	35954526	...	66	151	225	1.835652e-06	4.199749e-06	6.257905e-06	-5.203571e+00	...	8	32222400	...	2.482745e-07
TCGA-F7-A624-01A-22D-A30E-08	4353	4240	113	3160	2.595911e-02	coding only	1	28827981	...	1018	2688	4044	3.531291e-05	9.324274e-05	1.402804e-04	-3.853003e+00	...	305	28771789	...	1.060066e-05
TCGA-H7-7774-01A-21D-2078-08	178	175	3	137	1.685393e-02	coding only	1	28827981	...	38	124	171	1.318164e-06	4.301376e-06	5.931737e-06	-5.226818e+00	...	8	28771789	...	2.780501e-07
TCGA-H7-8501-01A-11D-2394-08	186	176	10	137	5.376344e-02	exome+100bp flanks	2	35954526	...	36	128	166	1.001265e-06	3.560052e-06	4.616943e-06	-5.335645e+00	...	1	32222400	...	3.103431e-08
TCGA-H7-A6C4-01A-11D-A30E-08	61	60	1	46	1.639344e-02	coding only	1	28827981	...	14	42	58	4.856393e-07	1.456918e-06	2.011934e-06	-5.696386e+00	...	2	28771789	...	6.951254e-08
TCGA-H7-A6C5-01A-11D-A30E-08	151	144	7	103	4.635762e-02	exome+100bp flanks	2	35954526	...	39	85	134	1.084703e-06	2.364097e-06	3.726930e-06	-5.428649e+00	...	9	32222400	...	2.793088e-07
TCGA-H7-A76A-01A-51D-A34J-08	103	97	6	71	5.825243e-02	exome+100bp flanks	2	35954526	...	26	64	95	7.231357e-07	1.780026e-06	2.642226e-06	-5.578030e+00	...	4	32222400	...	1.241372e-07
TCGA-HD-7229-01A-11D-2012-08	192	187	5	146	2.604167e-02	coding only	1	28827981	...	37	131	177	1.283475e-06	4.544196e-06	6.139868e-06	-5.211841e+00	...	7	28771789	...	2.432939e-07
TCGA-HD-7753-01A-11D-2078-08	122	116	6	96	4.918033e-02	exome+100bp flanks	2	35954526	...	18	80	109	5.006324e-07	2.225033e-06	3.031607e-06	-5.518327e+00	...	11	32222400	...	3.413774e-07
TCGA-HD-7754-01A-11D-2078-08	83	79	4	54	4.819277e-02	exome+100bp flanks	2	35954526	...	25	48	76	6.953228e-07	1.335020e-06	2.113781e-06	-5.674940e+00	...	3	32222400	...	9.310293e-08
TCGA-HD-7831-01A-11D-2129-08	53	49	4	34	7.547170e-02	exome+100bp flanks	2	35954526	...	15	27	48	4.171937e-07	7.509486e-07	1.335020e-06	-5.874512e+00	...	6	32222400	...	1.862059e-07
TCGA-HD-7832-01A-11D-2129-08	124	117	7	85	5.645161e-02	exome+100bp flanks	2	35954526	...	31	71	113	8.622002e-07	1.974717e-06	3.142859e-06	-5.502675e+00	...	7	32222400	...	2.172402e-07
TCGA-HD-7917-01A-11D-2229-08	130	125	5	94	3.846154e-02	exome+100bp flanks	2	35954526	...	27	87	119	7.509486e-07	2.419723e-06	3.309736e-06	-5.480207e+00	...	4	32222400	...	1.241372e-07
TCGA-HD-8224-01A-11D-2394-08	94	90	4	74	4.255319e-02	exome+100bp flanks	2	35954526	...	16	66	87	4.450066e-07	1.835652e-06	2.419723e-06	-5.616234e+00	...	5	32222400	...	1.551716e-07
TCGA-HD-8314-01A-11D-2394-08	86	83	3	62	3.488372e-02	exome+100bp flanks	2	35954526	...	20	60	80	5.562582e-07	1.668775e-06	2.225033e-06	-5.652664e+00	...	0	32222400	...	0
TCGA-HD-8634-01A-11D-2394-08	89	89	0	67	0	coding only	1	28827981	...	21	57	83	7.284589e-07	1.977246e-06	2.879147e-06	-5.540736e+00	...	5	28771789	...	1.737813e-07
TCGA-HD-8635-01A-11D-2394-08	261	253	8	180	3.065134e-02	exome+100bp flanks	2	35954526	...	68	166	241	1.891278e-06	4.616943e-06	6.702911e-06	-5.173737e+00	...	6	32222400	...	1.862059e-07
TCGA-HD-A4C1-01A-11D-A24D-08	250	245	5	175	2.000000e-02	coding only	1	28827981	...	68	161	238	2.358819e-06	5.584852e-06	8.255868e-06	-5.083237e+00	...	6	28771789	...	2.085376e-07
TCGA-HD-A633-01A-11D-A28R-08	169	162	7	123	4.142012e-02	exome+100bp flanks	2	35954526	...	37	104	153	1.029078e-06	2.892543e-06	4.255375e-06	-5.371062e+00	...	11	32222400	...	3.413774e-07
TCGA-HD-A634-01A-11D-A28R-08	62	56	6	38	9.677419e-02	exome+100bp flanks	2	35954526	...	17	30	56	4.728195e-07	8.343873e-07	1.557523e-06	-5.807566e+00	...	6	32222400	...	1.862059e-07
TCGA-HD-A6HZ-01A-12D-A31L-08	121	112	9	79	7.438017e-02	exome+100bp flanks	2	35954526	...	33	71	109	9.178260e-07	1.974717e-06	3.031607e-06	-5.518327e+00	...	4	32222400	...	1.241372e-07
TCGA-HD-A6I0-01A-11D-A31L-08	99	94	5	74	5.050505e-02	exome+100bp flanks	2	35954526	...	20	67	92	5.562582e-07	1.863465e-06	2.558788e-06	-5.591966e+00	...	4	32222400	...	1.241372e-07
TCGA-HL-7533-01A-11D-2229-08	953	936	17	690	1.783841e-02	coding only	1	28827981	...	228	643	881	7.908983e-06	2.230472e-05	3.056059e-05	-4.514838e+00	...	4	28771789	...	1.390251e-07
TCGA-IQ-7630-01A-11D-2078-08	160	151	9	113	5.625000e-02	exome+100bp flanks	2	35954526	...	37	103	147	1.029078e-06	2.864730e-06	4.088498e-06	-5.388436e+00	...	3	32222400	...	9.310293e-08
TCGA-IQ-7631-01A-11D-2078-08	40	39	1	23	2.500000e-02	exome+100bp flanks	2	35954526	...	14	18	35	3.893807e-07	5.006324e-07	9.734519e-07	-6.011686e+00	...	3	32222400	...	9.310293e-08
TCGA-IQ-7632-01A-11D-2078-08	64	64	0	46	0	coding only	1	28827981	...	15	40	58	5.203278e-07	1.387541e-06	2.011934e-06	-5.696386e+00	...	3	28771789	...	1.042688e-07
TCGA-IQ-A61E-01A-22D-A30E-08	248	242	6	176	2.419355e-02	coding only	1	28827981	...	63	160	230	2.185377e-06	5.550163e-06	7.978360e-06	-5.098086e+00	...	4	28771789	...	1.390251e-07
TCGA-IQ-A61G-01A-11D-A30E-08	181	176	5	131	2.762431e-02	coding only	1	28827981	...	43	115	164	1.491606e-06	3.989180e-06	5.688917e-06	-5.244970e+00	...	6	28771789	...	2.085376e-07
TCGA-IQ-A61H-01A-11D-A30E-08	191	183	8	139	4.188482e-02	exome+100bp flanks	2	35954526	...	44	121	175	1.223768e-06	3.365362e-06	4.867259e-06	-5.312716e+00	...	9	32222400	...	2.793088e-07
TCGA-IQ-A61I-01A-11D-A30E-08	181	174	7	125	3.867403e-02	exome+100bp flanks	2	35954526	...	45	113	161	1.251581e-06	3.142859e-06	4.477879e-06	-5.348928e+00	...	3	32222400	...	9.310293e-08
TCGA-IQ-A61J-01A-11D-A30E-08	71	65	6	48	8.450704e-02	exome+100bp flanks	2	35954526	...	16	42	62	4.450066e-07	1.168142e-06	1.724400e-06	-5.763362e+00	...	4	32222400	...	1.241372e-07
TCGA-IQ-A61K-01A-11D-A30E-08	99	94	5	70	5.050505e-02	exome+100bp flanks	2	35954526	...	24	64	94	6.675098e-07	1.780026e-06	2.614414e-06	-5.582626e+00	...	5	32222400	...	1.551716e-07
TCGA-IQ-A61L-01A-11D-A30E-08	123	121	2	92	1.626016e-02	coding only	1	28827981	...	25	81	111	8.672130e-07	2.809770e-06	3.850426e-06	-5.414491e+00	...	5	28771789	...	1.737813e-07
TCGA-IQ-A61O-01A-11D-A30E-08	68	63	5	45	7.352941e-02	exome+100bp flanks	2	35954526	...	16	39	62	4.450066e-07	1.084703e-06	1.724400e-06	-5.763362e+00	...	5	32222400	...	1.551716e-07
TCGA-IQ-A6SG-01A-12D-A34J-08	131	126	5	94	3.816794e-02	exome+100bp flanks	2	35954526	...	29	84	119	8.065744e-07	2.336284e-06	3.309736e-06	-5.480207e+00	...	6	32222400	...	1.862059e-07
TCGA-IQ-A6SH-01A-12D-A34J-08	110	102	8	72	7.272727e-02	exome+100bp flanks	2	35954526	...	28	60	95	7.787615e-07	1.668775e-06	2.642226e-06	-5.578030e+00	...	6	32222400	...	1.862059e-07
TCGA-KU-A66S-01A-21D-A30E-08	666	646	20	513	3.003003e-02	exome+100bp flanks	2	35954526	...	125	471	620	3.476614e-06	1.309988e-05	1.724400e-05	-4.763362e+00	...	18	32222400	...	5.586176e-07
TCGA-KU-A66T-01A-11D-A30E-08	141	136	5	103	3.546099e-02	exome+100bp flanks	2	35954526	...	30	98	131	8.343873e-07	2.725665e-06	3.643491e-06	-5.438482e+00	...	2	32222400	...	6.206862e-08
TCGA-KU-A6H7-01A-11D-A31L-08	207	204	3	151	1.449275e-02	coding only	1	28827981	...	51	139	195	1.769115e-06	4.821704e-06	6.764261e-06	-5.169780e+00	...	4	28771789	...	1.390251e-07
TCGA-KU-A6H8-01A-21D-A34J-08	40	39	1	32	2.500000e-02	exome+100bp flanks	2	35954526	...	7	29	38	1.946904e-07	8.065744e-07	1.056891e-06	-5.975970e+00	...	2	32222400	...	6.206862e-08
TCGA-MT-A51W-01A-21D-A25Y-08	88	81	7	64	7.954545e-02	exome+100bp flanks	2	35954526	...	16	57	79	4.450066e-07	1.585336e-06	2.197220e-06	-5.658126e+00	...	4	32222400	...	1.241372e-07
TCGA-MT-A51X-01A-11D-A25Y-08	71	65	6	45	8.450704e-02	exome+100bp flanks	2	35954526	...	19	43	64	5.284453e-07	1.195955e-06	1.780026e-06	-5.749574e+00	...	0	32222400	...	0
TCGA-MT-A67A-01A-11D-A30E-08	150	145	5	112	3.333333e-02	exome+100bp flanks	2	35954526	...	31	95	137	8.622002e-07	2.642226e-06	3.810369e-06	-5.419033e+00	...	7	32222400	...	2.172402e-07
TCGA-MT-A67D-01A-31D-A30E-08	146	137	9	102	6.164384e-02	exome+100bp flanks	2	35954526	...	32	93	133	8.900131e-07	2.586601e-06	3.699117e-06	-5.431902e+00	...	5	32222400	...	1.551716e-07
TCGA-MT-A67F-01A-11D-A30E-08	387	375	12	296	3.100775e-02	exome+100bp flanks	2	35954526	...	75	277	354	2.085968e-06	7.704176e-06	9.845770e-06	-5.006750e+00	...	0	32222400	...	0
TCGA-MT-A67G-01A-11D-A30E-08	90	86	4	63	4.444444e-02	exome+100bp flanks	2	35954526	...	20	57	81	5.562582e-07	1.585336e-06	2.252846e-06	-5.647269e+00	...	3	32222400	...	9.310293e-08
TCGA-MT-A7BN-01A-12D-A34J-08	78	73	5	57	6.410256e-02	exome+100bp flanks	2	35954526	...	15	49	70	4.171937e-07	1.362833e-06	1.946904e-06	-5.710656e+00	...	4	32222400	...	1.241372e-07
TCGA-MZ-A5BI-01A-31D-A34J-08	57	52	5	42	8.771930e-02	exome+100bp flanks	2	35954526	...	9	35	50	2.503162e-07	9.734519e-07	1.390646e-06	-5.856784e+00	...	6	32222400	...	1.862059e-07
TCGA-MZ-A6I9-01A-11D-A31L-08	64	62	2	41	3.125000e-02	exome+100bp flanks	2	35954526	...	19	34	56	5.284453e-07	9.456389e-07	1.557523e-06	-5.807566e+00	...	3	32222400	...	9.310293e-08
TCGA-MZ-A7D7-01A-21D-A34J-08	216	215	1	147	4.629630e-03	coding only	1	28827981	...	61	134	204	2.116000e-06	4.648262e-06	7.076458e-06	-5.150184e+00	...	7	28771789	...	2.432939e-07
TCGA-P3-A5Q6-01A-11D-A28R-08	158	151	7	112	4.430380e-02	exome+100bp flanks	2	35954526	...	37	101	145	1.029078e-06	2.809104e-06	4.032872e-06	-5.394386e+00	...	5	32222400	...	1.551716e-07
TCGA-P3-A5QA-01A-11D-A28R-08	95	92	3	73	3.157895e-02	exome+100bp flanks	2	35954526	...	19	65	89	5.284453e-07	1.807839e-06	2.475349e-06	-5.606364e+00	...	5	32222400	...	1.551716e-07
TCGA-P3-A5QE-01A-11D-A28R-08	58	54	4	41	6.896552e-02	exome+100bp flanks	2	35954526	...	13	37	53	3.615678e-07	1.029078e-06	1.474084e-06	-5.831478e+00	...	3	32222400	...	9.310293e-08
TCGA-P3-A5QF-01A-11D-A28R-08	480	462	18	340	3.750000e-02	exome+100bp flanks	2	35954526	...	116	313	441	3.226298e-06	8.705441e-06	1.226549e-05	-4.911315e+00	...	5	32222400	...	1.551716e-07
TCGA-P3-A6SW-01A-11D-A34J-08	125	122	3	92	2.400000e-02	coding only	1	28827981	...	29	85	118	1.005967e-06	2.948524e-06	4.093245e-06	-5.387932e+00	...	2	28771789	...	6.951254e-08
TCGA-P3-A6SX-01A-11D-A34J-08	218	208	10	166	4.587156e-02	exome+100bp flanks	2	35954526	...	42	149	200	1.168142e-06	4.144124e-06	5.562582e-06	-5.254724e+00	...	7	32222400	...	2.172402e-07
TCGA-P3-A6T0-01A-12D-A34J-08	115	109	6	82	5.217391e-02	exome+100bp flanks	2	35954526	...	27	69	104	7.509486e-07	1.919091e-06	2.892543e-06	-5.538720e+00	...	6	32222400	...	1.862059e-07
TCGA-P3-A6T2-01A-11D-A34J-08	82	76	6	49	7.317073e-02	exome+100bp flanks	2	35954526	...	26	41	71	7.231357e-07	1.140329e-06	1.974717e-06	-5.704495e+00	...	4	32222400	...	1.241372e-07
TCGA-P3-A6T3-01A-11D-A34J-08	141	139	2	109	1.418440e-02	coding only	1	28827981	...	28	101	130	9.712786e-07	3.503541e-06	4.509508e-06	-5.345871e+00	...	0	28771789	...	0
TCGA-P3-A6T4-01A-11D-A34J-08	198	195	3	148	1.515152e-02	coding only	1	28827981	...	46	130	182	1.595672e-06	4.509508e-06	6.313311e-06	-5.199743e+00	...	6	28771789	...	2.085376e-07
TCGA-P3-A6T5-01A-11D-A34J-08	306	295	11	207	3.594771e-02	exome+100bp flanks	2	35954526	...	84	187	283	2.336284e-06	5.201014e-06	7.871054e-06	-5.103967e+00	...	7	32222400	...	2.172402e-07
TCGA-P3-A6T6-01A-11D-A34J-08	160	156	4	123	2.500000e-02	coding only	1	28827981	...	32	116	154	1.110033e-06	4.023868e-06	5.342032e-06	-5.272294e+00	...	5	28771789	...	1.737813e-07
TCGA-P3-A6T7-01A-11D-A34J-08	179	170	9	129	5.027933e-02	exome+100bp flanks	2	35954526	...	36	114	162	1.001265e-06	3.170672e-06	4.505691e-06	-5.346239e+00	...	12	32222400	...	3.724117e-07
TCGA-P3-A6T8-01A-11D-A34J-08	108	104	4	84	3.703704e-02	exome+100bp flanks	2	35954526	...	19	67	98	5.284453e-07	1.863465e-06	2.725665e-06	-5.564527e+00	...	10	32222400	...	3.103431e-07
TCGA-QK-A64Z-01A-11D-A30E-08	112	111	1	74	8.928571e-03	coding only	1	28827981	...	34	66	102	1.179410e-06	2.289442e-06	3.538229e-06	-5.451214e+00	...	2	28771789	...	6.951254e-08
TCGA-QK-A652-01A-11D-A30E-08	63	59	4	49	6.349206e-02	exome+100bp flanks	2	35954526	...	9	43	56	2.503162e-07	1.195955e-06	1.557523e-06	-5.807566e+00	...	2	32222400	...	6.206862e-08
TCGA-QK-A6IF-01A-11D-A31L-08	39	35	4	25	1.025641e-01	exome+100bp flanks	2	35954526	...	8	22	33	2.225033e-07	6.118840e-07	9.178260e-07	-6.037240e+00	...	2	32222400	...	6.206862e-08
TCGA-QK-A6IG-01A-11D-A31L-08	145	142	3	114	2.068966e-02	coding only	1	28827981	...	26	103	133	9.019015e-07	3.572918e-06	4.613573e-06	-5.335963e+00	...	3	28771789	...	1.042688e-07
TCGA-QK-A6IH-01A-11D-A31L-08	84	83	1	66	1.190476e-02	coding only	1	28827981	...	17	62	81	5.897048e-07	2.150688e-06	2.809770e-06	-5.551329e+00	...	2	28771789	...	6.951254e-08
TCGA-QK-A6II-01A-11D-A31L-08	211	202	9	151	4.265403e-02	exome+100bp flanks	2	35954526	...	46	134	189	1.279394e-06	3.726930e-06	5.256640e-06	-5.279292e+00	...	7	32222400	...	2.172402e-07
TCGA-QK-A6IJ-01A-11D-A31L-08	103	100	3	73	2.912621e-02	coding only	1	28827981	...	26	66	98	9.019015e-07	2.289442e-06	3.399475e-06	-5.468588e+00	...	5	28771789	...	1.737813e-07
TCGA-QK-A6V9-01A-11D-A34J-08	110	106	4	76	3.636364e-02	exome+100bp flanks	2	35954526	...	30	64	100	8.343873e-07	1.780026e-06	2.781291e-06	-5.555754e+00	...	5	32222400	...	1.551716e-07
TCGA-QK-A6VB-01A-12D-A34J-08	617	593	24	472	3.889789e-02	exome+100bp flanks	2	35954526	...	116	335	557	3.226298e-06	9.317325e-06	1.549179e-05	-4.809898e+00	...	104	32222400	...	3.227568e-06
TCGA-QK-A6VC-01A-23D-A34J-08	258	254	4	195	1.550388e-02	coding only	1	28827981	...	58	181	244	2.011934e-06	6.278622e-06	8.463999e-06	-5.072424e+00	...	2	28771789	...	6.951254e-08
TCGA-RS-A6TO-01A-32D-A34J-08	225	219	6	160	2.666667e-02	coding only	1	28827981	...	57	143	212	1.977246e-06	4.960458e-06	7.353966e-06	-5.133478e+00	...	10	28771789	...	3.475627e-07
TCGA-RS-A6TP-01A-12D-A34J-08	174	163	11	118	6.321839e-02	exome+100bp flanks	2	35954526	...	41	104	152	1.140329e-06	2.892543e-06	4.227562e-06	-5.373910e+00	...	3	32222400	...	9.310293e-08
TCGA-T2-A6WX-01A-12D-A34J-08	247	239	8	177	3.238866e-02	exome+100bp flanks	2	35954526	...	59	167	231	1.640962e-06	4.644756e-06	6.424782e-06	-5.192142e+00	...	3	32222400	...	9.310293e-08
TCGA-T2-A6WZ-01A-21D-A34J-08	132	127	5	92	3.787879e-02	exome+100bp flanks	2	35954526	...	33	84	122	9.178260e-07	2.336284e-06	3.393175e-06	-5.469394e+00	...	4	32222400	...	1.241372e-07
TCGA-T2-A6X0-01A-11D-A34J-08	84	79	5	56	5.952381e-02	exome+100bp flanks	2	35954526	...	22	52	77	6.118840e-07	1.446271e-06	2.141594e-06	-5.669263e+00	...	2	32222400	...	6.206862e-08
TCGA-T2-A6X2-01A-12D-A34J-08	441	431	10	329	2.267574e-02	coding only	1	28827981	...	99	308	417	3.434163e-06	1.068406e-05	1.446511e-05	-4.839678e+00	...	7	28771789	...	2.432939e-07
TCGA-TN-A7HI-01A-11D-A34J-08	78	73	5	60	6.410256e-02	exome+100bp flanks	2	35954526	...	10	52	67	2.781291e-07	1.446271e-06	1.863465e-06	-5.729679e+00	...	5	32222400	...	1.551716e-07
TCGA-TN-A7HJ-01A-12D-A34J-08	149	142	7	111	4.697987e-02	exome+100bp flanks	2	35954526	...	30	99	138	8.343873e-07	2.753478e-06	3.838182e-06	-5.415874e+00	...	7	32222400	...	2.172402e-07
TCGA-TN-A7HL-01A-11D-A34J-08	770	747	23	547	2.987013e-02	coding only	1	28827981	...	194	506	715	6.729573e-06	1.755239e-05	2.480229e-05	-4.605508e+00	...	6	28771789	...	2.085376e-07
TCGA-UF-A718-01A-22D-A34J-08	87	81	6	65	6.896552e-02	exome+100bp flanks	2	35954526	...	15	57	77	4.171937e-07	1.585336e-06	2.141594e-06	-5.669263e+00	...	4	32222400	...	1.241372e-07
TCGA-UF-A719-01A-12D-A34J-08	160	157	3	124	1.875000e-02	coding only	1	28827981	...	30	109	149	1.040656e-06	3.781049e-06	5.168590e-06	-5.286628e+00	...	8	28771789	...	2.780501e-07
TCGA-UF-A71A-01A-22D-A34J-08	254	245	9	180	3.543307e-02	exome+100bp flanks	2	35954526	...	61	161	234	1.696588e-06	4.477879e-06	6.508221e-06	-5.186538e+00	...	7	32222400	...	2.172402e-07
TCGA-UF-A71B-01A-12D-A34J-08	197	189	8	136	4.060914e-02	exome+100bp flanks	2	35954526	...	50	119	178	1.390646e-06	3.309736e-06	4.950698e-06	-5.305334e+00	...	5	32222400	...	1.551716e-07
TCGA-UF-A71D-01A-12D-A34J-08	559	539	20	399	3.577818e-02	exome+100bp flanks	2	35954526	...	131	356	516	3.643491e-06	9.901396e-06	1.435146e-05	-4.843104e+00	...	26	32222400	...	8.068921e-07
TCGA-UF-A71E-01A-31D-A34J-08	207	202	5	143	2.415459e-02	coding only	1	28827981	...	55	128	190	1.907869e-06	4.440131e-06	6.590819e-06	-5.181061e+00	...	6	28771789	...	2.085376e-07
TCGA-UF-A7J9-01A-12D-A34J-08	312	303	9	229	2.884615e-02	coding only	1	28827981	...	70	207	295	2.428196e-06	7.180524e-06	1.023311e-05	-4.989992e+00	...	14	28771789	...	4.865877e-07
TCGA-UF-A7JA-01A-12D-A34J-08	298	288	10	226	3.355705e-02	exome+100bp flanks	2	35954526	...	57	212	272	1.585336e-06	5.896337e-06	7.565112e-06	-5.121185e+00	...	3	32222400	...	9.310293e-08
TCGA-UF-A7JC-01A-21D-A34J-08	69	65	4	52	5.797101e-02	exome+100bp flanks	2	35954526	...	9	39	55	2.503162e-07	1.084703e-06	1.529710e-06	-5.815391e+00	...	6	32222400	...	1.862059e-07
TCGA-UF-A7JD-01A-11D-A34J-08	146	137	9	104	6.164384e-02	exome+100bp flanks	2	35954526	...	32	94	130	8.900131e-07	2.614414e-06	3.615678e-06	-5.441810e+00	...	3	32222400	...	9.310293e-08
TCGA-UF-A7JF-01A-11D-A34J-08	142	126	16	93	1.126761e-01	exome+100bp flanks	2	35954526	...	30	83	124	8.343873e-07	2.308472e-06	3.448801e-06	-5.462332e+00	...	6	32222400	...	1.862059e-07
TCGA-UF-A7JH-01A-21D-A34J-08	102	97	5	71	4.901961e-02	exome+100bp flanks	2	35954526	...	24	57	90	6.675098e-07	1.585336e-06	2.503162e-06	-5.601511e+00	...	5	32222400	...	1.551716e-07
TCGA-UF-A7JJ-01A-11D-A34J-08	127	118	9	95	7.086614e-02	exome+100bp flanks	2	35954526	...	23	82	116	6.396969e-07	2.280659e-06	3.226298e-06	-5.491296e+00	...	7	32222400	...	2.172402e-07
TCGA-UF-A7JK-01A-11D-A34J-08	146	142	4	99	2.739726e-02	coding only	1	28827981	...	41	94	141	1.422229e-06	3.260721e-06	4.891081e-06	-5.310595e+00	...	4	28771789	...	1.390251e-07
TCGA-UF-A7JO-01A-11D-A34J-08	224	218	6	159	2.678571e-02	coding only	1	28827981	...	58	143	212	2.011934e-06	4.960458e-06	7.353966e-06	-5.133478e+00	...	10	28771789	...	3.475627e-07
TCGA-UF-A7JS-01A-11D-A34J-08	91	83	8	60	8.791209e-02	exome+100bp flanks	2	35954526	...	22	54	82	6.118840e-07	1.501897e-06	2.280659e-06	-5.641940e+00	...	4	32222400	...	1.241372e-07
TCGA-UF-A7JT-01A-11D-A34J-08	245	237	8	173	3.265306e-02	exome+100bp flanks	2	35954526	...	62	158	224	1.724400e-06	4.394440e-06	6.230092e-06	-5.205506e+00	...	3	32222400	...	9.310293e-08
TCGA-UF-A7JV-01A-11D-A34J-08	110	107	3	79	2.727273e-02	coding only	1	28827981	...	28	72	106	9.712786e-07	2.497573e-06	3.676983e-06	-5.434508e+00	...	5	28771789	...	1.737813e-07
TCGA-UP-A6WW-01A-12D-A34J-08	52	50	2	37	3.846154e-02	exome+100bp flanks	2	35954526	...	13	32	48	3.615678e-07	8.900131e-07	1.335020e-06	-5.874512e+00	...	3	32222400	...	9.310293e-08
TCGA-WA-A7GZ-01A-11D-A34J-08	269	257	12	192	4.460967e-02	exome+100bp flanks	2	35954526	...	62	164	245	1.724400e-06	4.561317e-06	6.814163e-06	-5.166587e+00	...	14	32222400	...	4.344804e-07
TCGA-WA-A7H4-01A-21D-A34J-08	108	102	6	83	5.555556e-02	exome+100bp flanks	2	35954526	...	19	74	100	5.284453e-07	2.058155e-06	2.781291e-06	-5.555754e+00	...	6	32222400	...	1.862059e-07
