[1] "R version 2.15.3 (2013-03-01)"
[1] "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "dx" ""  
[1] "dx" " " 
[1] "dx" " " 
[1] "opt:  MUTATION_RATE"
[1] "vtyp==survival in table1 generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==multiclass in table1 generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==binary in table1 table generation"
[1] "vtyp==binary in table1 table generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==multiclass in table1 generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==multiclass in table1 generation"
[1] "vtyp==binary in table1 table generation"
                              Clinical feature               
DAYS_TO_DEATH_OR_LAST_FUP     "DAYS_TO_DEATH_OR_LAST_FUP"    
AGE                           "AGE"                          
AGE_mutation.rate             "AGE_mutation rate"            
NEOPLASM_DISEASESTAGE         "NEOPLASM_DISEASESTAGE"        
PATHOLOGY_T_STAGE             "PATHOLOGY_T_STAGE"            
PATHOLOGY_N_STAGE             "PATHOLOGY_N_STAGE"            
PATHOLOGY_M_STAGE             "PATHOLOGY_M_STAGE"            
GENDER                        "GENDER"                       
KARNOFSKY_PERFORMANCE_SCORE   "KARNOFSKY_PERFORMANCE_SCORE"  
HISTOLOGICAL_TYPE             "HISTOLOGICAL_TYPE"            
NUMBER_PACK_YEARS_SMOKED      "NUMBER_PACK_YEARS_SMOKED"     
YEAR_OF_TOBACCO_SMOKING_ONSET "YEAR_OF_TOBACCO_SMOKING_ONSET"
RACE                          "RACE"                         
ETHNICITY                     "ETHNICITY"                    
                              Statistical test            
DAYS_TO_DEATH_OR_LAST_FUP     "Cox regression test"       
AGE                           "Spearman correlation test" 
AGE_mutation.rate             "Linear Regression Analysis"
NEOPLASM_DISEASESTAGE         "Kruskal-Wallis test"       
PATHOLOGY_T_STAGE             "Spearman correlation test" 
PATHOLOGY_N_STAGE             "Spearman correlation test" 
PATHOLOGY_M_STAGE             "Wilcoxon test"             
GENDER                        "Wilcoxon test"             
KARNOFSKY_PERFORMANCE_SCORE   "Spearman correlation test" 
HISTOLOGICAL_TYPE             "Kruskal-Wallis test"       
NUMBER_PACK_YEARS_SMOKED      "Spearman correlation test" 
YEAR_OF_TOBACCO_SMOKING_ONSET "Spearman correlation test" 
RACE                          "Kruskal-Wallis test"       
ETHNICITY                     "Wilcoxon test"             
                              Significant variables Associated with         
DAYS_TO_DEATH_OR_LAST_FUP     "N=0"                 " "                     
AGE                           "N=2"                 "older"                 
AGE_mutation.rate             "N=2"                 " "                     
NEOPLASM_DISEASESTAGE         "N=0"                 " "                     
PATHOLOGY_T_STAGE             "N=0"                 " "                     
PATHOLOGY_N_STAGE             "N=0"                 " "                     
PATHOLOGY_M_STAGE             "N=0"                 " "                     
GENDER                        "N=1"                 "male"                  
KARNOFSKY_PERFORMANCE_SCORE   "N=0"                 " "                     
HISTOLOGICAL_TYPE             "N=2"                 " "                     
NUMBER_PACK_YEARS_SMOKED      "N=0"                 " "                     
YEAR_OF_TOBACCO_SMOKING_ONSET "N=0"                 " "                     
RACE                          "N=0"                 " "                     
ETHNICITY                     "N=1"                 "not hispanic or latino"
                              &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
DAYS_TO_DEATH_OR_LAST_FUP     " "                                                                                       
AGE                           "N=2"                                                                                     
AGE_mutation.rate             " "                                                                                       
NEOPLASM_DISEASESTAGE         " "                                                                                       
PATHOLOGY_T_STAGE             " "                                                                                       
PATHOLOGY_N_STAGE             " "                                                                                       
PATHOLOGY_M_STAGE             " "                                                                                       
GENDER                        "N=1"                                                                                     
KARNOFSKY_PERFORMANCE_SCORE   " "                                                                                       
HISTOLOGICAL_TYPE             " "                                                                                       
NUMBER_PACK_YEARS_SMOKED      " "                                                                                       
YEAR_OF_TOBACCO_SMOKING_ONSET " "                                                                                       
RACE                          " "                                                                                       
ETHNICITY                     "N=1"                                                                                     
                              Associated with           
DAYS_TO_DEATH_OR_LAST_FUP     " "                  " "  
AGE                           "younger"            "N=0"
AGE_mutation.rate             " "                  " "  
NEOPLASM_DISEASESTAGE         " "                  " "  
PATHOLOGY_T_STAGE             " "                  " "  
PATHOLOGY_N_STAGE             " "                  " "  
PATHOLOGY_M_STAGE             " "                  " "  
GENDER                        "female"             "N=0"
KARNOFSKY_PERFORMANCE_SCORE   " "                  " "  
HISTOLOGICAL_TYPE             " "                  " "  
NUMBER_PACK_YEARS_SMOKED      " "                  " "  
YEAR_OF_TOBACCO_SMOKING_ONSET " "                  " "  
RACE                          " "                  " "  
ETHNICITY                     "hispanic or latino" "N=0"
[1] "vtyp==survival in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==multiclass in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==binary in basici table generation"
[1] "vtyp==binary in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==multiclass in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==multiclass in basici table generation"
[1] "vtyp==binary in basici table generation"
