[1] "ofn"         "-oTKIPAN-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/KIPAN-TP/15165233/KIPAN-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/KIPAN-TP/15087107/transformed.cor.cli.txt"

nPatients in clinical file=893, in cluster file=882, common to both=882
[1]  39 882
[1] "AMP PEAK  1(1Q32.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  1(1Q32.1) MUTATED AMP PEAK  1(1Q32.1) WILD-TYPE 
                           82                           800 
  AMP PEAK  1(1Q32.1) MUTATED AMP PEAK  1(1Q32.1) WILD-TYPE 
                           82                           800 
[1] "AMP PEAK  2(2Q32.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  2(2Q32.1) MUTATED AMP PEAK  2(2Q32.1) WILD-TYPE 
                          136                           746 
  AMP PEAK  2(2Q32.1) MUTATED AMP PEAK  2(2Q32.1) WILD-TYPE 
                          136                           746 
[1] "AMP PEAK  3(3Q26.32) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  3(3Q26.32) MUTATED AMP PEAK  3(3Q26.32) WILD-TYPE 
                           193                            689 
  AMP PEAK  3(3Q26.32) MUTATED AMP PEAK  3(3Q26.32) WILD-TYPE 
                           193                            689 
[1] "AMP PEAK  4(5Q35.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  4(5Q35.1) MUTATED AMP PEAK  4(5Q35.1) WILD-TYPE 
                          376                           506 
  AMP PEAK  4(5Q35.1) MUTATED AMP PEAK  4(5Q35.1) WILD-TYPE 
                          376                           506 
[1] "AMP PEAK  5(7Q31.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  5(7Q31.2) MUTATED AMP PEAK  5(7Q31.2) WILD-TYPE 
                          377                           505 
  AMP PEAK  5(7Q31.2) MUTATED AMP PEAK  5(7Q31.2) WILD-TYPE 
                          377                           505 
[1] "AMP PEAK  6(8Q24.22) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  6(8Q24.22) MUTATED AMP PEAK  6(8Q24.22) WILD-TYPE 
                           125                            757 
  AMP PEAK  6(8Q24.22) MUTATED AMP PEAK  6(8Q24.22) WILD-TYPE 
                           125                            757 
[1] "AMP PEAK  7(10P14) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  7(10P14) MUTATED AMP PEAK  7(10P14) WILD-TYPE 
                          34                          848 
  AMP PEAK  7(10P14) MUTATED AMP PEAK  7(10P14) WILD-TYPE 
                          34                          848 
[1] "AMP PEAK  8(17Q25.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  8(17Q25.2) MUTATED AMP PEAK  8(17Q25.2) WILD-TYPE 
                           245                            637 
  AMP PEAK  8(17Q25.2) MUTATED AMP PEAK  8(17Q25.2) WILD-TYPE 
                           245                            637 
[1] "AMP PEAK  9(19P13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  9(19P13.2) MUTATED AMP PEAK  9(19P13.2) WILD-TYPE 
                            98                            784 
  AMP PEAK  9(19P13.2) MUTATED AMP PEAK  9(19P13.2) WILD-TYPE 
                            98                            784 
[1] "AMP PEAK 10(XP22.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 10(XP22.2) MUTATED AMP PEAK 10(XP22.2) WILD-TYPE 
                          126                           756 
  AMP PEAK 10(XP22.2) MUTATED AMP PEAK 10(XP22.2) WILD-TYPE 
                          126                           756 
[1] "AMP PEAK 11(XP11.4) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 11(XP11.4) MUTATED AMP PEAK 11(XP11.4) WILD-TYPE 
                          134                           748 
  AMP PEAK 11(XP11.4) MUTATED AMP PEAK 11(XP11.4) WILD-TYPE 
                          134                           748 
[1] "AMP PEAK 12(XQ11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 12(XQ11.2) MUTATED AMP PEAK 12(XQ11.2) WILD-TYPE 
                          135                           747 
  AMP PEAK 12(XQ11.2) MUTATED AMP PEAK 12(XQ11.2) WILD-TYPE 
                          135                           747 
[1] "AMP PEAK 13(XQ28) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 13(XQ28) MUTATED AMP PEAK 13(XQ28) WILD-TYPE 
                        137                         745 
  AMP PEAK 13(XQ28) MUTATED AMP PEAK 13(XQ28) WILD-TYPE 
                        137                         745 
[1] "DEL PEAK  1(1P36.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE 
                           209                            673 
  DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE 
                           209                            673 
[1] "DEL PEAK  2(1P31.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE 
                          166                           716 
  DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE 
                          166                           716 
[1] "DEL PEAK  3(1Q43) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE 
                        114                         768 
  DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE 
                        114                         768 
[1] "DEL PEAK  4(2Q37.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE 
                          111                           771 
  DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE 
                          111                           771 
[1] "DEL PEAK  5(3P26.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(3P26.3) MUTATED DEL PEAK  5(3P26.3) WILD-TYPE 
                          489                           393 
  DEL PEAK  5(3P26.3) MUTATED DEL PEAK  5(3P26.3) WILD-TYPE 
                          489                           393 
[1] "DEL PEAK  6(3P21.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(3P21.2) MUTATED DEL PEAK  6(3P21.2) WILD-TYPE 
                          503                           379 
  DEL PEAK  6(3P21.2) MUTATED DEL PEAK  6(3P21.2) WILD-TYPE 
                          503                           379 
[1] "DEL PEAK  7(3P14.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(3P14.1) MUTATED DEL PEAK  7(3P14.1) WILD-TYPE 
                          408                           474 
  DEL PEAK  7(3P14.1) MUTATED DEL PEAK  7(3P14.1) WILD-TYPE 
                          408                           474 
[1] "DEL PEAK  8(3P12.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(3P12.2) MUTATED DEL PEAK  8(3P12.2) WILD-TYPE 
                          336                           546 
  DEL PEAK  8(3P12.2) MUTATED DEL PEAK  8(3P12.2) WILD-TYPE 
                          336                           546 
[1] "DEL PEAK  9(4Q34.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(4Q34.3) MUTATED DEL PEAK  9(4Q34.3) WILD-TYPE 
                          113                           769 
  DEL PEAK  9(4Q34.3) MUTATED DEL PEAK  9(4Q34.3) WILD-TYPE 
                          113                           769 
[1] "DEL PEAK 10(5P15.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(5P15.33) MUTATED DEL PEAK 10(5P15.33) WILD-TYPE 
                            31                            851 
  DEL PEAK 10(5P15.33) MUTATED DEL PEAK 10(5P15.33) WILD-TYPE 
                            31                            851 
[1] "DEL PEAK 11(6Q22.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(6Q22.31) MUTATED DEL PEAK 11(6Q22.31) WILD-TYPE 
                           227                            655 
  DEL PEAK 11(6Q22.31) MUTATED DEL PEAK 11(6Q22.31) WILD-TYPE 
                           227                            655 
[1] "DEL PEAK 12(6Q26) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(6Q26) MUTATED DEL PEAK 12(6Q26) WILD-TYPE 
                        233                         649 
  DEL PEAK 12(6Q26) MUTATED DEL PEAK 12(6Q26) WILD-TYPE 
                        233                         649 
[1] "DEL PEAK 13(6Q26) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE 
                        234                         648 
  DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE 
                        234                         648 
[1] "DEL PEAK 14(8P23.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE 
                          184                           698 
  DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE 
                          184                           698 
[1] "DEL PEAK 15(9P23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(9P23) MUTATED DEL PEAK 15(9P23) WILD-TYPE 
                        198                         684 
  DEL PEAK 15(9P23) MUTATED DEL PEAK 15(9P23) WILD-TYPE 
                        198                         684 
[1] "DEL PEAK 16(9P21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE 
                          209                           673 
  DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE 
                          209                           673 
[1] "DEL PEAK 17(10Q23.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(10Q23.31) MUTATED DEL PEAK 17(10Q23.31) WILD-TYPE 
                            164                             718 
  DEL PEAK 17(10Q23.31) MUTATED DEL PEAK 17(10Q23.31) WILD-TYPE 
                            164                             718 
[1] "DEL PEAK 18(11Q21) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(11Q21) MUTATED DEL PEAK 18(11Q21) WILD-TYPE 
                          61                          821 
  DEL PEAK 18(11Q21) MUTATED DEL PEAK 18(11Q21) WILD-TYPE 
                          61                          821 
[1] "DEL PEAK 19(11Q23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 19(11Q23.1) MUTATED DEL PEAK 19(11Q23.1) WILD-TYPE 
                            71                            811 
  DEL PEAK 19(11Q23.1) MUTATED DEL PEAK 19(11Q23.1) WILD-TYPE 
                            71                            811 
[1] "DEL PEAK 20(13Q12.13) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 20(13Q12.13) MUTATED DEL PEAK 20(13Q12.13) WILD-TYPE 
                            150                             732 
  DEL PEAK 20(13Q12.13) MUTATED DEL PEAK 20(13Q12.13) WILD-TYPE 
                            150                             732 
[1] "DEL PEAK 21(13Q14.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 21(13Q14.2) MUTATED DEL PEAK 21(13Q14.2) WILD-TYPE 
                           149                            733 
  DEL PEAK 21(13Q14.2) MUTATED DEL PEAK 21(13Q14.2) WILD-TYPE 
                           149                            733 
[1] "DEL PEAK 22(14Q31.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 22(14Q31.1) MUTATED DEL PEAK 22(14Q31.1) WILD-TYPE 
                           279                            603 
  DEL PEAK 22(14Q31.1) MUTATED DEL PEAK 22(14Q31.1) WILD-TYPE 
                           279                            603 
[1] "DEL PEAK 23(16Q23.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 23(16Q23.3) MUTATED DEL PEAK 23(16Q23.3) WILD-TYPE 
                            37                            845 
  DEL PEAK 23(16Q23.3) MUTATED DEL PEAK 23(16Q23.3) WILD-TYPE 
                            37                            845 
[1] "DEL PEAK 24(18Q22.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 24(18Q22.2) MUTATED DEL PEAK 24(18Q22.2) WILD-TYPE 
                           155                            727 
  DEL PEAK 24(18Q22.2) MUTATED DEL PEAK 24(18Q22.2) WILD-TYPE 
                           155                            727 
[1] "DEL PEAK 25(19P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 25(19P13.3) MUTATED DEL PEAK 25(19P13.3) WILD-TYPE 
                            43                            839 
  DEL PEAK 25(19P13.3) MUTATED DEL PEAK 25(19P13.3) WILD-TYPE 
                            43                            839 
[1] "DEL PEAK 26(XP22.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 26(XP22.2) MUTATED DEL PEAK 26(XP22.2) WILD-TYPE 
                          127                           755 
  DEL PEAK 26(XP22.2) MUTATED DEL PEAK 26(XP22.2) WILD-TYPE 
                          127                           755 
[1] "data2feature, selection=ALL"
 [1] "MRNA_CNMF"                   "MRNA_CHIERARCHICAL"         
 [3] "CN_CNMF"                     "METHLYATION_CNMF"           
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 10 rows and 882 columns.

Variable 1:'MRNA_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'MRNA_CHIERARCHICAL':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'CN_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'METHLYATION_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MRNASEQ_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_MATURE_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "## **** detect survival parameters (defined in index such as ind_OS, ind_MFS, ind_RFS, ind_RFS, ind_BCR and ind_d2ssd) *** ##"
[1] "detected survival parameters using [ind_OS, overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_OS, curated_overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_TCGAOS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survivial parameters using [ind_MFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_RFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_BCR]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_Progression]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [index_additional_survival_time]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using condition: [is.null(surv.mat)&&(selection=='SURV')]"
[1] "survival parameters accumulated so far"
NULL
[1] "************ conversion from categorical data to rank data ********** "
[1] "****** SUMMARY ***** "
Output Data has 882 columns, 0 survival variables, and 10 non-survival variables.
[1] "* survival variables: "
NULL
[1] "* non-survival variables: "
 [1] "MRNA_CNMF"                   "MRNA_CHIERARCHICAL"         
 [3] "CN_CNMF"                     "METHLYATION_CNMF"           
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
MRNA_CNMF, nv=4, binary=FALSE, numeric=FALSE
MRNA_CHIERARCHICAL, nv=5, binary=FALSE, numeric=FALSE
CN_CNMF, nv=3, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=4, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=6, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=5, binary=FALSE, numeric=FALSE

Clustering(1) Variable = AMP PEAK  1(1Q32.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1Q32.1) MUTATED        3      5      1      1
  AMP PEAK  1(1Q32.1) WILD-TYPE     30     19     11     16
D1V1, multiclass
        clus
vv       AMP PEAK  1(1Q32.1) MUTATED AMP PEAK  1(1Q32.1) WILD-TYPE
  CLUS_1                           3                            30
  CLUS_2                           5                            19
  CLUS_3                           1                            11
  CLUS_4                           1                            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1Q32.1) MUTATED        2      5      1      1      1
  AMP PEAK  1(1Q32.1) WILD-TYPE     18     19     17     12     10
D1V2, multiclass
        clus
vv       AMP PEAK  1(1Q32.1) MUTATED AMP PEAK  1(1Q32.1) WILD-TYPE
  CLUS_1                           2                            18
  CLUS_2                           5                            19
  CLUS_3                           1                            17
  CLUS_4                           1                            12
  CLUS_5                           1                            10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q32.1) MUTATED        6     18     58
  AMP PEAK  1(1Q32.1) WILD-TYPE    276    292    232
D1V3, multiclass
        clus
vv       AMP PEAK  1(1Q32.1) MUTATED AMP PEAK  1(1Q32.1) WILD-TYPE
  CLUS_1                           6                           276
  CLUS_2                          18                           292
  CLUS_3                          58                           232
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q32.1) MUTATED        9     29     10
  AMP PEAK  1(1Q32.1) WILD-TYPE    119    274    211
D1V4, multiclass
        clus
vv       AMP PEAK  1(1Q32.1) MUTATED AMP PEAK  1(1Q32.1) WILD-TYPE
  CLUS_1                           9                           119
  CLUS_2                          29                           274
  CLUS_3                          10                           211
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1Q32.1) MUTATED        4     37     26     13
  AMP PEAK  1(1Q32.1) WILD-TYPE    115    158    271    255
D1V5, multiclass
        clus
vv       AMP PEAK  1(1Q32.1) MUTATED AMP PEAK  1(1Q32.1) WILD-TYPE
  CLUS_1                           4                           115
  CLUS_2                          37                           158
  CLUS_3                          26                           271
  CLUS_4                          13                           255
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1Q32.1) MUTATED        0     21     19     32      8      0
  AMP PEAK  1(1Q32.1) WILD-TYPE     88    124    188    127    103    169
D1V6, multiclass
        clus
vv       AMP PEAK  1(1Q32.1) MUTATED AMP PEAK  1(1Q32.1) WILD-TYPE
  CLUS_1                           0                            88
  CLUS_2                          21                           124
  CLUS_3                          19                           188
  CLUS_4                          32                           127
  CLUS_5                           8                           103
  CLUS_6                           0                           169
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q32.1) MUTATED       13     25     42
  AMP PEAK  1(1Q32.1) WILD-TYPE    315    167    302
D1V7, multiclass
        clus
vv       AMP PEAK  1(1Q32.1) MUTATED AMP PEAK  1(1Q32.1) WILD-TYPE
  CLUS_1                          13                           315
  CLUS_2                          25                           167
  CLUS_3                          42                           302
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q32.1) MUTATED        0     79      1
  AMP PEAK  1(1Q32.1) WILD-TYPE     77    502    205
D1V8, multiclass
        clus
vv       AMP PEAK  1(1Q32.1) MUTATED AMP PEAK  1(1Q32.1) WILD-TYPE
  CLUS_1                           0                            77
  CLUS_2                          79                           502
  CLUS_3                           1                           205
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1Q32.1) MUTATED        5      4      8     13
  AMP PEAK  1(1Q32.1) WILD-TYPE    148     66     55    112
D1V9, multiclass
        clus
vv       AMP PEAK  1(1Q32.1) MUTATED AMP PEAK  1(1Q32.1) WILD-TYPE
  CLUS_1                           5                           148
  CLUS_2                           4                            66
  CLUS_3                           8                            55
  CLUS_4                          13                           112
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1Q32.1) MUTATED        0      2     15     13      0
  AMP PEAK  1(1Q32.1) WILD-TYPE     50     87     79    119     46
D1V10, multiclass
        clus
vv       AMP PEAK  1(1Q32.1) MUTATED AMP PEAK  1(1Q32.1) WILD-TYPE
  CLUS_1                           0                            50
  CLUS_2                           2                            87
  CLUS_3                          15                            79
  CLUS_4                          13                           119
  CLUS_5                           0                            46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = AMP PEAK  2(2Q32.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(2Q32.1) MUTATED        4      3      0      3
  AMP PEAK  2(2Q32.1) WILD-TYPE     29     21     12     14
D2V1, multiclass
        clus
vv       AMP PEAK  2(2Q32.1) MUTATED AMP PEAK  2(2Q32.1) WILD-TYPE
  CLUS_1                           4                            29
  CLUS_2                           3                            21
  CLUS_3                           0                            12
  CLUS_4                           3                            14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(2Q32.1) MUTATED        1      3      3      3      0
  AMP PEAK  2(2Q32.1) WILD-TYPE     19     21     15     10     11
D2V2, multiclass
        clus
vv       AMP PEAK  2(2Q32.1) MUTATED AMP PEAK  2(2Q32.1) WILD-TYPE
  CLUS_1                           1                            19
  CLUS_2                           3                            21
  CLUS_3                           3                            15
  CLUS_4                           3                            10
  CLUS_5                           0                            11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(2Q32.1) MUTATED       36     19     81
  AMP PEAK  2(2Q32.1) WILD-TYPE    246    291    209
D2V3, multiclass
        clus
vv       AMP PEAK  2(2Q32.1) MUTATED AMP PEAK  2(2Q32.1) WILD-TYPE
  CLUS_1                          36                           246
  CLUS_2                          19                           291
  CLUS_3                          81                           209
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(2Q32.1) MUTATED        9     48     42
  AMP PEAK  2(2Q32.1) WILD-TYPE    119    255    179
D2V4, multiclass
        clus
vv       AMP PEAK  2(2Q32.1) MUTATED AMP PEAK  2(2Q32.1) WILD-TYPE
  CLUS_1                           9                           119
  CLUS_2                          48                           255
  CLUS_3                          42                           179
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(2Q32.1) MUTATED        7     35     48     46
  AMP PEAK  2(2Q32.1) WILD-TYPE    112    160    249    222
D2V5, multiclass
        clus
vv       AMP PEAK  2(2Q32.1) MUTATED AMP PEAK  2(2Q32.1) WILD-TYPE
  CLUS_1                           7                           112
  CLUS_2                          35                           160
  CLUS_3                          48                           249
  CLUS_4                          46                           222
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(2Q32.1) MUTATED        1     25     22     32     25     31
  AMP PEAK  2(2Q32.1) WILD-TYPE     87    120    185    127     86    138
D2V6, multiclass
        clus
vv       AMP PEAK  2(2Q32.1) MUTATED AMP PEAK  2(2Q32.1) WILD-TYPE
  CLUS_1                           1                            87
  CLUS_2                          25                           120
  CLUS_3                          22                           185
  CLUS_4                          32                           127
  CLUS_5                          25                            86
  CLUS_6                          31                           138
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(2Q32.1) MUTATED       45     29     60
  AMP PEAK  2(2Q32.1) WILD-TYPE    283    163    284
D2V7, multiclass
        clus
vv       AMP PEAK  2(2Q32.1) MUTATED AMP PEAK  2(2Q32.1) WILD-TYPE
  CLUS_1                          45                           283
  CLUS_2                          29                           163
  CLUS_3                          60                           284
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(2Q32.1) MUTATED        1     97     36
  AMP PEAK  2(2Q32.1) WILD-TYPE     76    484    170
D2V8, multiclass
        clus
vv       AMP PEAK  2(2Q32.1) MUTATED AMP PEAK  2(2Q32.1) WILD-TYPE
  CLUS_1                           1                            76
  CLUS_2                          97                           484
  CLUS_3                          36                           170
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(2Q32.1) MUTATED       25      4     17     21
  AMP PEAK  2(2Q32.1) WILD-TYPE    128     66     46    104
D2V9, multiclass
        clus
vv       AMP PEAK  2(2Q32.1) MUTATED AMP PEAK  2(2Q32.1) WILD-TYPE
  CLUS_1                          25                           128
  CLUS_2                           4                            66
  CLUS_3                          17                            46
  CLUS_4                          21                           104
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(2Q32.1) MUTATED        6     17     20     23      1
  AMP PEAK  2(2Q32.1) WILD-TYPE     44     72     74    109     45
D2V10, multiclass
        clus
vv       AMP PEAK  2(2Q32.1) MUTATED AMP PEAK  2(2Q32.1) WILD-TYPE
  CLUS_1                           6                            44
  CLUS_2                          17                            72
  CLUS_3                          20                            74
  CLUS_4                          23                           109
  CLUS_5                           1                            45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = AMP PEAK  3(3Q26.32) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(3Q26.32) MUTATED        2      7      2      6
  AMP PEAK  3(3Q26.32) WILD-TYPE     31     17     10     11
D3V1, multiclass
        clus
vv       AMP PEAK  3(3Q26.32) MUTATED AMP PEAK  3(3Q26.32) WILD-TYPE
  CLUS_1                            2                             31
  CLUS_2                            7                             17
  CLUS_3                            2                             10
  CLUS_4                            6                             11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(3Q26.32) MUTATED        1      7      6      1      2
  AMP PEAK  3(3Q26.32) WILD-TYPE     19     17     12     12      9
D3V2, multiclass
        clus
vv       AMP PEAK  3(3Q26.32) MUTATED AMP PEAK  3(3Q26.32) WILD-TYPE
  CLUS_1                            1                             19
  CLUS_2                            7                             17
  CLUS_3                            6                             12
  CLUS_4                            1                             12
  CLUS_5                            2                              9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(3Q26.32) MUTATED      103     11     79
  AMP PEAK  3(3Q26.32) WILD-TYPE    179    299    211
D3V3, multiclass
        clus
vv       AMP PEAK  3(3Q26.32) MUTATED AMP PEAK  3(3Q26.32) WILD-TYPE
  CLUS_1                          103                            179
  CLUS_2                           11                            299
  CLUS_3                           79                            211
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(3Q26.32) MUTATED       17     43     91
  AMP PEAK  3(3Q26.32) WILD-TYPE    111    260    130
D3V4, multiclass
        clus
vv       AMP PEAK  3(3Q26.32) MUTATED AMP PEAK  3(3Q26.32) WILD-TYPE
  CLUS_1                           17                            111
  CLUS_2                           43                            260
  CLUS_3                           91                            130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(3Q26.32) MUTATED       13     53     25    102
  AMP PEAK  3(3Q26.32) WILD-TYPE    106    142    272    166
D3V5, multiclass
        clus
vv       AMP PEAK  3(3Q26.32) MUTATED AMP PEAK  3(3Q26.32) WILD-TYPE
  CLUS_1                           13                            106
  CLUS_2                           53                            142
  CLUS_3                           25                            272
  CLUS_4                          102                            166
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(3Q26.32) MUTATED       10     31     18     45     11     78
  AMP PEAK  3(3Q26.32) WILD-TYPE     78    114    189    114    100     91
D3V6, multiclass
        clus
vv       AMP PEAK  3(3Q26.32) MUTATED AMP PEAK  3(3Q26.32) WILD-TYPE
  CLUS_1                           10                             78
  CLUS_2                           31                            114
  CLUS_3                           18                            189
  CLUS_4                           45                            114
  CLUS_5                           11                            100
  CLUS_6                           78                             91
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(3Q26.32) MUTATED      110     37     43
  AMP PEAK  3(3Q26.32) WILD-TYPE    218    155    301
D3V7, multiclass
        clus
vv       AMP PEAK  3(3Q26.32) MUTATED AMP PEAK  3(3Q26.32) WILD-TYPE
  CLUS_1                          110                            218
  CLUS_2                           37                            155
  CLUS_3                           43                            301
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(3Q26.32) MUTATED        9     94     87
  AMP PEAK  3(3Q26.32) WILD-TYPE     68    487    119
D3V8, multiclass
        clus
vv       AMP PEAK  3(3Q26.32) MUTATED AMP PEAK  3(3Q26.32) WILD-TYPE
  CLUS_1                            9                             68
  CLUS_2                           94                            487
  CLUS_3                           87                            119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(3Q26.32) MUTATED       60      5     15     12
  AMP PEAK  3(3Q26.32) WILD-TYPE     93     65     48    113
D3V9, multiclass
        clus
vv       AMP PEAK  3(3Q26.32) MUTATED AMP PEAK  3(3Q26.32) WILD-TYPE
  CLUS_1                           60                             93
  CLUS_2                            5                             65
  CLUS_3                           15                             48
  CLUS_4                           12                            113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(3Q26.32) MUTATED       16     39     19     14      4
  AMP PEAK  3(3Q26.32) WILD-TYPE     34     50     75    118     42
D3V10, multiclass
        clus
vv       AMP PEAK  3(3Q26.32) MUTATED AMP PEAK  3(3Q26.32) WILD-TYPE
  CLUS_1                           16                             34
  CLUS_2                           39                             50
  CLUS_3                           19                             75
  CLUS_4                           14                            118
  CLUS_5                            4                             42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = AMP PEAK  4(5Q35.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(5Q35.1) MUTATED       20     15      3      2
  AMP PEAK  4(5Q35.1) WILD-TYPE     13      9      9     15
D4V1, multiclass
        clus
vv       AMP PEAK  4(5Q35.1) MUTATED AMP PEAK  4(5Q35.1) WILD-TYPE
  CLUS_1                          20                            13
  CLUS_2                          15                             9
  CLUS_3                           3                             9
  CLUS_4                           2                            15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(5Q35.1) MUTATED       13     15      2      7      3
  AMP PEAK  4(5Q35.1) WILD-TYPE      7      9     16      6      8
D4V2, multiclass
        clus
vv       AMP PEAK  4(5Q35.1) MUTATED AMP PEAK  4(5Q35.1) WILD-TYPE
  CLUS_1                          13                             7
  CLUS_2                          15                             9
  CLUS_3                           2                            16
  CLUS_4                           7                             6
  CLUS_5                           3                             8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(5Q35.1) MUTATED       35    139    202
  AMP PEAK  4(5Q35.1) WILD-TYPE    247    171     88
D4V3, multiclass
        clus
vv       AMP PEAK  4(5Q35.1) MUTATED AMP PEAK  4(5Q35.1) WILD-TYPE
  CLUS_1                          35                           247
  CLUS_2                         139                           171
  CLUS_3                         202                            88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(5Q35.1) MUTATED       17    197     23
  AMP PEAK  4(5Q35.1) WILD-TYPE    111    106    198
D4V4, multiclass
        clus
vv       AMP PEAK  4(5Q35.1) MUTATED AMP PEAK  4(5Q35.1) WILD-TYPE
  CLUS_1                          17                           111
  CLUS_2                         197                           106
  CLUS_3                          23                           198
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(5Q35.1) MUTATED       16    121    203     34
  AMP PEAK  4(5Q35.1) WILD-TYPE    103     74     94    234
D4V5, multiclass
        clus
vv       AMP PEAK  4(5Q35.1) MUTATED AMP PEAK  4(5Q35.1) WILD-TYPE
  CLUS_1                          16                           103
  CLUS_2                         121                            74
  CLUS_3                         203                            94
  CLUS_4                          34                           234
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(5Q35.1) MUTATED       11     30    145    110     68     10
  AMP PEAK  4(5Q35.1) WILD-TYPE     77    115     62     49     43    159
D4V6, multiclass
        clus
vv       AMP PEAK  4(5Q35.1) MUTATED AMP PEAK  4(5Q35.1) WILD-TYPE
  CLUS_1                          11                            77
  CLUS_2                          30                           115
  CLUS_3                         145                            62
  CLUS_4                         110                            49
  CLUS_5                          68                            43
  CLUS_6                          10                           159
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(5Q35.1) MUTATED       38     89    240
  AMP PEAK  4(5Q35.1) WILD-TYPE    290    103    104
D4V7, multiclass
        clus
vv       AMP PEAK  4(5Q35.1) MUTATED AMP PEAK  4(5Q35.1) WILD-TYPE
  CLUS_1                          38                           290
  CLUS_2                          89                           103
  CLUS_3                         240                           104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(5Q35.1) MUTATED        9    338     20
  AMP PEAK  4(5Q35.1) WILD-TYPE     68    243    186
D4V8, multiclass
        clus
vv       AMP PEAK  4(5Q35.1) MUTATED AMP PEAK  4(5Q35.1) WILD-TYPE
  CLUS_1                           9                            68
  CLUS_2                         338                           243
  CLUS_3                          20                           186
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(5Q35.1) MUTATED       19      7     19     90
  AMP PEAK  4(5Q35.1) WILD-TYPE    134     63     44     35
D4V9, multiclass
        clus
vv       AMP PEAK  4(5Q35.1) MUTATED AMP PEAK  4(5Q35.1) WILD-TYPE
  CLUS_1                          19                           134
  CLUS_2                           7                            63
  CLUS_3                          19                            44
  CLUS_4                          90                            35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(5Q35.1) MUTATED        3     14     15     97      6
  AMP PEAK  4(5Q35.1) WILD-TYPE     47     75     79     35     40
D4V10, multiclass
        clus
vv       AMP PEAK  4(5Q35.1) MUTATED AMP PEAK  4(5Q35.1) WILD-TYPE
  CLUS_1                           3                            47
  CLUS_2                          14                            75
  CLUS_3                          15                            79
  CLUS_4                          97                            35
  CLUS_5                           6                            40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = AMP PEAK  5(7Q31.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(7Q31.2) MUTATED        9     10      5     12
  AMP PEAK  5(7Q31.2) WILD-TYPE     24     14      7      5
D5V1, multiclass
        clus
vv       AMP PEAK  5(7Q31.2) MUTATED AMP PEAK  5(7Q31.2) WILD-TYPE
  CLUS_1                           9                            24
  CLUS_2                          10                            14
  CLUS_3                           5                             7
  CLUS_4                          12                             5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(7Q31.2) MUTATED        5     10     13      4      4
  AMP PEAK  5(7Q31.2) WILD-TYPE     15     14      5      9      7
D5V2, multiclass
        clus
vv       AMP PEAK  5(7Q31.2) MUTATED AMP PEAK  5(7Q31.2) WILD-TYPE
  CLUS_1                           5                            15
  CLUS_2                          10                            14
  CLUS_3                          13                             5
  CLUS_4                           4                             9
  CLUS_5                           4                             7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(7Q31.2) MUTATED      194     42    141
  AMP PEAK  5(7Q31.2) WILD-TYPE     88    268    149
D5V3, multiclass
        clus
vv       AMP PEAK  5(7Q31.2) MUTATED AMP PEAK  5(7Q31.2) WILD-TYPE
  CLUS_1                         194                            88
  CLUS_2                          42                           268
  CLUS_3                         141                           149
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(7Q31.2) MUTATED       42     85    155
  AMP PEAK  5(7Q31.2) WILD-TYPE     86    218     66
D5V4, multiclass
        clus
vv       AMP PEAK  5(7Q31.2) MUTATED AMP PEAK  5(7Q31.2) WILD-TYPE
  CLUS_1                          42                            86
  CLUS_2                          85                           218
  CLUS_3                         155                            66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(7Q31.2) MUTATED       37     91     73    174
  AMP PEAK  5(7Q31.2) WILD-TYPE     82    104    224     94
D5V5, multiclass
        clus
vv       AMP PEAK  5(7Q31.2) MUTATED AMP PEAK  5(7Q31.2) WILD-TYPE
  CLUS_1                          37                            82
  CLUS_2                          91                           104
  CLUS_3                          73                           224
  CLUS_4                         174                            94
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(7Q31.2) MUTATED       30     44     61     70     26    144
  AMP PEAK  5(7Q31.2) WILD-TYPE     58    101    146     89     85     25
D5V6, multiclass
        clus
vv       AMP PEAK  5(7Q31.2) MUTATED AMP PEAK  5(7Q31.2) WILD-TYPE
  CLUS_1                          30                            58
  CLUS_2                          44                           101
  CLUS_3                          61                           146
  CLUS_4                          70                            89
  CLUS_5                          26                            85
  CLUS_6                         144                            25
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(7Q31.2) MUTATED      189     78    107
  AMP PEAK  5(7Q31.2) WILD-TYPE    139    114    237
D5V7, multiclass
        clus
vv       AMP PEAK  5(7Q31.2) MUTATED AMP PEAK  5(7Q31.2) WILD-TYPE
  CLUS_1                         189                           139
  CLUS_2                          78                           114
  CLUS_3                         107                           237
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(7Q31.2) MUTATED       29    194    151
  AMP PEAK  5(7Q31.2) WILD-TYPE     48    387     55
D5V8, multiclass
        clus
vv       AMP PEAK  5(7Q31.2) MUTATED AMP PEAK  5(7Q31.2) WILD-TYPE
  CLUS_1                          29                            48
  CLUS_2                         194                           387
  CLUS_3                         151                            55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(7Q31.2) MUTATED      109     24     29     37
  AMP PEAK  5(7Q31.2) WILD-TYPE     44     46     34     88
D5V9, multiclass
        clus
vv       AMP PEAK  5(7Q31.2) MUTATED AMP PEAK  5(7Q31.2) WILD-TYPE
  CLUS_1                         109                            44
  CLUS_2                          24                            46
  CLUS_3                          29                            34
  CLUS_4                          37                            88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(7Q31.2) MUTATED       41     62     35     41     20
  AMP PEAK  5(7Q31.2) WILD-TYPE      9     27     59     91     26
D5V10, multiclass
        clus
vv       AMP PEAK  5(7Q31.2) MUTATED AMP PEAK  5(7Q31.2) WILD-TYPE
  CLUS_1                          41                             9
  CLUS_2                          62                            27
  CLUS_3                          35                            59
  CLUS_4                          41                            91
  CLUS_5                          20                            26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = AMP PEAK  6(8Q24.22) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(8Q24.22) MUTATED        1      3      2      2
  AMP PEAK  6(8Q24.22) WILD-TYPE     32     21     10     15
D6V1, multiclass
        clus
vv       AMP PEAK  6(8Q24.22) MUTATED AMP PEAK  6(8Q24.22) WILD-TYPE
  CLUS_1                            1                             32
  CLUS_2                            3                             21
  CLUS_3                            2                             10
  CLUS_4                            2                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(8Q24.22) MUTATED        1      3      3      0      1
  AMP PEAK  6(8Q24.22) WILD-TYPE     19     21     15     13     10
D6V2, multiclass
        clus
vv       AMP PEAK  6(8Q24.22) MUTATED AMP PEAK  6(8Q24.22) WILD-TYPE
  CLUS_1                            1                             19
  CLUS_2                            3                             21
  CLUS_3                            3                             15
  CLUS_4                            0                             13
  CLUS_5                            1                             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(8Q24.22) MUTATED       34      7     84
  AMP PEAK  6(8Q24.22) WILD-TYPE    248    303    206
D6V3, multiclass
        clus
vv       AMP PEAK  6(8Q24.22) MUTATED AMP PEAK  6(8Q24.22) WILD-TYPE
  CLUS_1                           34                            248
  CLUS_2                            7                            303
  CLUS_3                           84                            206
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(8Q24.22) MUTATED       27     51     19
  AMP PEAK  6(8Q24.22) WILD-TYPE    101    252    202
D6V4, multiclass
        clus
vv       AMP PEAK  6(8Q24.22) MUTATED AMP PEAK  6(8Q24.22) WILD-TYPE
  CLUS_1                           27                            101
  CLUS_2                           51                            252
  CLUS_3                           19                            202
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(8Q24.22) MUTATED       23     62     16     23
  AMP PEAK  6(8Q24.22) WILD-TYPE     96    133    281    245
D6V5, multiclass
        clus
vv       AMP PEAK  6(8Q24.22) MUTATED AMP PEAK  6(8Q24.22) WILD-TYPE
  CLUS_1                           23                             96
  CLUS_2                           62                            133
  CLUS_3                           16                            281
  CLUS_4                           23                            245
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(8Q24.22) MUTATED       18     26     16     54      2      8
  AMP PEAK  6(8Q24.22) WILD-TYPE     70    119    191    105    109    161
D6V6, multiclass
        clus
vv       AMP PEAK  6(8Q24.22) MUTATED AMP PEAK  6(8Q24.22) WILD-TYPE
  CLUS_1                           18                             70
  CLUS_2                           26                            119
  CLUS_3                           16                            191
  CLUS_4                           54                            105
  CLUS_5                            2                            109
  CLUS_6                            8                            161
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(8Q24.22) MUTATED       37     44     42
  AMP PEAK  6(8Q24.22) WILD-TYPE    291    148    302
D6V7, multiclass
        clus
vv       AMP PEAK  6(8Q24.22) MUTATED AMP PEAK  6(8Q24.22) WILD-TYPE
  CLUS_1                           37                            291
  CLUS_2                           44                            148
  CLUS_3                           42                            302
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(8Q24.22) MUTATED       18     94     11
  AMP PEAK  6(8Q24.22) WILD-TYPE     59    487    195
D6V8, multiclass
        clus
vv       AMP PEAK  6(8Q24.22) MUTATED AMP PEAK  6(8Q24.22) WILD-TYPE
  CLUS_1                           18                             59
  CLUS_2                           94                            487
  CLUS_3                           11                            195
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(8Q24.22) MUTATED       12     17     17     15
  AMP PEAK  6(8Q24.22) WILD-TYPE    141     53     46    110
D6V9, multiclass
        clus
vv       AMP PEAK  6(8Q24.22) MUTATED AMP PEAK  6(8Q24.22) WILD-TYPE
  CLUS_1                           12                            141
  CLUS_2                           17                             53
  CLUS_3                           17                             46
  CLUS_4                           15                            110
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(8Q24.22) MUTATED        1      8     20     17     15
  AMP PEAK  6(8Q24.22) WILD-TYPE     49     81     74    115     31
D6V10, multiclass
        clus
vv       AMP PEAK  6(8Q24.22) MUTATED AMP PEAK  6(8Q24.22) WILD-TYPE
  CLUS_1                            1                             49
  CLUS_2                            8                             81
  CLUS_3                           20                             74
  CLUS_4                           17                            115
  CLUS_5                           15                             31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = AMP PEAK  7(10P14) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(10P14) MUTATED        0      2      1      2
  AMP PEAK  7(10P14) WILD-TYPE     33     22     11     15
D7V1, multiclass
        clus
vv       AMP PEAK  7(10P14) MUTATED AMP PEAK  7(10P14) WILD-TYPE
  CLUS_1                          0                           33
  CLUS_2                          2                           22
  CLUS_3                          1                           11
  CLUS_4                          2                           15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(10P14) MUTATED        0      2      2      0      1
  AMP PEAK  7(10P14) WILD-TYPE     20     22     16     13     10
D7V2, multiclass
        clus
vv       AMP PEAK  7(10P14) MUTATED AMP PEAK  7(10P14) WILD-TYPE
  CLUS_1                          0                           20
  CLUS_2                          2                           22
  CLUS_3                          2                           16
  CLUS_4                          0                           13
  CLUS_5                          1                           10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(10P14) MUTATED        9      1     24
  AMP PEAK  7(10P14) WILD-TYPE    273    309    266
D7V3, multiclass
        clus
vv       AMP PEAK  7(10P14) MUTATED AMP PEAK  7(10P14) WILD-TYPE
  CLUS_1                          9                          273
  CLUS_2                          1                          309
  CLUS_3                         24                          266
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(10P14) MUTATED       10     10      4
  AMP PEAK  7(10P14) WILD-TYPE    118    293    217
D7V4, multiclass
        clus
vv       AMP PEAK  7(10P14) MUTATED AMP PEAK  7(10P14) WILD-TYPE
  CLUS_1                         10                          118
  CLUS_2                         10                          293
  CLUS_3                          4                          217
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(10P14) MUTATED        6     16      4      8
  AMP PEAK  7(10P14) WILD-TYPE    113    179    293    260
D7V5, multiclass
        clus
vv       AMP PEAK  7(10P14) MUTATED AMP PEAK  7(10P14) WILD-TYPE
  CLUS_1                          6                          113
  CLUS_2                         16                          179
  CLUS_3                          4                          293
  CLUS_4                          8                          260
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(10P14) MUTATED        4     10      4     13      0      3
  AMP PEAK  7(10P14) WILD-TYPE     84    135    203    146    111    166
D7V6, multiclass
        clus
vv       AMP PEAK  7(10P14) MUTATED AMP PEAK  7(10P14) WILD-TYPE
  CLUS_1                          4                           84
  CLUS_2                         10                          135
  CLUS_3                          4                          203
  CLUS_4                         13                          146
  CLUS_5                          0                          111
  CLUS_6                          3                          166
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(10P14) MUTATED       11     12     11
  AMP PEAK  7(10P14) WILD-TYPE    317    180    333
D7V7, multiclass
        clus
vv       AMP PEAK  7(10P14) MUTATED AMP PEAK  7(10P14) WILD-TYPE
  CLUS_1                         11                          317
  CLUS_2                         12                          180
  CLUS_3                         11                          333
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(10P14) MUTATED        3     26      5
  AMP PEAK  7(10P14) WILD-TYPE     74    555    201
D7V8, multiclass
        clus
vv       AMP PEAK  7(10P14) MUTATED AMP PEAK  7(10P14) WILD-TYPE
  CLUS_1                          3                           74
  CLUS_2                         26                          555
  CLUS_3                          5                          201
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(10P14) MUTATED        3      5      3      4
  AMP PEAK  7(10P14) WILD-TYPE    150     65     60    121
D7V9, multiclass
        clus
vv       AMP PEAK  7(10P14) MUTATED AMP PEAK  7(10P14) WILD-TYPE
  CLUS_1                          3                          150
  CLUS_2                          5                           65
  CLUS_3                          3                           60
  CLUS_4                          4                          121
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(10P14) MUTATED        0      3      6      3      3
  AMP PEAK  7(10P14) WILD-TYPE     50     86     88    129     43
D7V10, multiclass
        clus
vv       AMP PEAK  7(10P14) MUTATED AMP PEAK  7(10P14) WILD-TYPE
  CLUS_1                          0                           50
  CLUS_2                          3                           86
  CLUS_3                          6                           88
  CLUS_4                          3                          129
  CLUS_5                          3                           43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = AMP PEAK  8(17Q25.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(17Q25.2) MUTATED        1      1      3     12
  AMP PEAK  8(17Q25.2) WILD-TYPE     32     23      9      5
D8V1, multiclass
        clus
vv       AMP PEAK  8(17Q25.2) MUTATED AMP PEAK  8(17Q25.2) WILD-TYPE
  CLUS_1                            1                             32
  CLUS_2                            1                             23
  CLUS_3                            3                              9
  CLUS_4                           12                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(17Q25.2) MUTATED        1      1     13      0      2
  AMP PEAK  8(17Q25.2) WILD-TYPE     19     23      5     13      9
D8V2, multiclass
        clus
vv       AMP PEAK  8(17Q25.2) MUTATED AMP PEAK  8(17Q25.2) WILD-TYPE
  CLUS_1                            1                             19
  CLUS_2                            1                             23
  CLUS_3                           13                              5
  CLUS_4                            0                             13
  CLUS_5                            2                              9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(17Q25.2) MUTATED      177     17     51
  AMP PEAK  8(17Q25.2) WILD-TYPE    105    293    239
D8V3, multiclass
        clus
vv       AMP PEAK  8(17Q25.2) MUTATED AMP PEAK  8(17Q25.2) WILD-TYPE
  CLUS_1                          177                            105
  CLUS_2                           17                            293
  CLUS_3                           51                            239
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(17Q25.2) MUTATED       21     30    168
  AMP PEAK  8(17Q25.2) WILD-TYPE    107    273     53
D8V4, multiclass
        clus
vv       AMP PEAK  8(17Q25.2) MUTATED AMP PEAK  8(17Q25.2) WILD-TYPE
  CLUS_1                           21                            107
  CLUS_2                           30                            273
  CLUS_3                          168                             53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(17Q25.2) MUTATED       11     26     14    194
  AMP PEAK  8(17Q25.2) WILD-TYPE    108    169    283     74
D8V5, multiclass
        clus
vv       AMP PEAK  8(17Q25.2) MUTATED AMP PEAK  8(17Q25.2) WILD-TYPE
  CLUS_1                           11                            108
  CLUS_2                           26                            169
  CLUS_3                           14                            283
  CLUS_4                          194                             74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(17Q25.2) MUTATED        2     59     10     21      3    150
  AMP PEAK  8(17Q25.2) WILD-TYPE     86     86    197    138    108     19
D8V6, multiclass
        clus
vv       AMP PEAK  8(17Q25.2) MUTATED AMP PEAK  8(17Q25.2) WILD-TYPE
  CLUS_1                            2                             86
  CLUS_2                           59                             86
  CLUS_3                           10                            197
  CLUS_4                           21                            138
  CLUS_5                            3                            108
  CLUS_6                          150                             19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(17Q25.2) MUTATED      187     35     22
  AMP PEAK  8(17Q25.2) WILD-TYPE    141    157    322
D8V7, multiclass
        clus
vv       AMP PEAK  8(17Q25.2) MUTATED AMP PEAK  8(17Q25.2) WILD-TYPE
  CLUS_1                          187                            141
  CLUS_2                           35                            157
  CLUS_3                           22                            322
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(17Q25.2) MUTATED        1     82    161
  AMP PEAK  8(17Q25.2) WILD-TYPE     76    499     45
D8V8, multiclass
        clus
vv       AMP PEAK  8(17Q25.2) MUTATED AMP PEAK  8(17Q25.2) WILD-TYPE
  CLUS_1                            1                             76
  CLUS_2                           82                            499
  CLUS_3                          161                             45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(17Q25.2) MUTATED      119      7     30      5
  AMP PEAK  8(17Q25.2) WILD-TYPE     34     63     33    120
D8V9, multiclass
        clus
vv       AMP PEAK  8(17Q25.2) MUTATED AMP PEAK  8(17Q25.2) WILD-TYPE
  CLUS_1                          119                             34
  CLUS_2                            7                             63
  CLUS_3                           30                             33
  CLUS_4                            5                            120
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(17Q25.2) MUTATED       44     68     43      5      1
  AMP PEAK  8(17Q25.2) WILD-TYPE      6     21     51    127     45
D8V10, multiclass
        clus
vv       AMP PEAK  8(17Q25.2) MUTATED AMP PEAK  8(17Q25.2) WILD-TYPE
  CLUS_1                           44                              6
  CLUS_2                           68                             21
  CLUS_3                           43                             51
  CLUS_4                            5                            127
  CLUS_5                            1                             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = AMP PEAK  9(19P13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(19P13.2) MUTATED        1      3      2      4
  AMP PEAK  9(19P13.2) WILD-TYPE     32     21     10     13
D9V1, multiclass
        clus
vv       AMP PEAK  9(19P13.2) MUTATED AMP PEAK  9(19P13.2) WILD-TYPE
  CLUS_1                            1                             32
  CLUS_2                            3                             21
  CLUS_3                            2                             10
  CLUS_4                            4                             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(19P13.2) MUTATED        1      3      4      0      2
  AMP PEAK  9(19P13.2) WILD-TYPE     19     21     14     13      9
D9V2, multiclass
        clus
vv       AMP PEAK  9(19P13.2) MUTATED AMP PEAK  9(19P13.2) WILD-TYPE
  CLUS_1                            1                             19
  CLUS_2                            3                             21
  CLUS_3                            4                             14
  CLUS_4                            0                             13
  CLUS_5                            2                              9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(19P13.2) MUTATED       43      1     54
  AMP PEAK  9(19P13.2) WILD-TYPE    239    309    236
D9V3, multiclass
        clus
vv       AMP PEAK  9(19P13.2) MUTATED AMP PEAK  9(19P13.2) WILD-TYPE
  CLUS_1                           43                            239
  CLUS_2                            1                            309
  CLUS_3                           54                            236
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(19P13.2) MUTATED       24     30     25
  AMP PEAK  9(19P13.2) WILD-TYPE    104    273    196
D9V4, multiclass
        clus
vv       AMP PEAK  9(19P13.2) MUTATED AMP PEAK  9(19P13.2) WILD-TYPE
  CLUS_1                           24                            104
  CLUS_2                           30                            273
  CLUS_3                           25                            196
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(19P13.2) MUTATED       25     27     17     29
  AMP PEAK  9(19P13.2) WILD-TYPE     94    168    280    239
D9V5, multiclass
        clus
vv       AMP PEAK  9(19P13.2) MUTATED AMP PEAK  9(19P13.2) WILD-TYPE
  CLUS_1                           25                             94
  CLUS_2                           27                            168
  CLUS_3                           17                            280
  CLUS_4                           29                            239
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(19P13.2) MUTATED       23     10     13     25      5     22
  AMP PEAK  9(19P13.2) WILD-TYPE     65    135    194    134    106    147
D9V6, multiclass
        clus
vv       AMP PEAK  9(19P13.2) MUTATED AMP PEAK  9(19P13.2) WILD-TYPE
  CLUS_1                           23                             65
  CLUS_2                           10                            135
  CLUS_3                           13                            194
  CLUS_4                           25                            134
  CLUS_5                            5                            106
  CLUS_6                           22                            147
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(19P13.2) MUTATED       51     11     35
  AMP PEAK  9(19P13.2) WILD-TYPE    277    181    309
D9V7, multiclass
        clus
vv       AMP PEAK  9(19P13.2) MUTATED AMP PEAK  9(19P13.2) WILD-TYPE
  CLUS_1                           51                            277
  CLUS_2                           11                            181
  CLUS_3                           35                            309
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(19P13.2) MUTATED       22     50     25
  AMP PEAK  9(19P13.2) WILD-TYPE     55    531    181
D9V8, multiclass
        clus
vv       AMP PEAK  9(19P13.2) MUTATED AMP PEAK  9(19P13.2) WILD-TYPE
  CLUS_1                           22                             55
  CLUS_2                           50                            531
  CLUS_3                           25                            181
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(19P13.2) MUTATED       17     14      4     11
  AMP PEAK  9(19P13.2) WILD-TYPE    136     56     59    114
D9V9, multiclass
        clus
vv       AMP PEAK  9(19P13.2) MUTATED AMP PEAK  9(19P13.2) WILD-TYPE
  CLUS_1                           17                            136
  CLUS_2                           14                             56
  CLUS_3                            4                             59
  CLUS_4                           11                            114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(19P13.2) MUTATED        8      7      6     11     14
  AMP PEAK  9(19P13.2) WILD-TYPE     42     82     88    121     32
D9V10, multiclass
        clus
vv       AMP PEAK  9(19P13.2) MUTATED AMP PEAK  9(19P13.2) WILD-TYPE
  CLUS_1                            8                             42
  CLUS_2                            7                             82
  CLUS_3                            6                             88
  CLUS_4                           11                            121
  CLUS_5                           14                             32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = AMP PEAK 10(XP22.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(XP22.2) MUTATED        2      2      1      8
  AMP PEAK 10(XP22.2) WILD-TYPE     31     22     11      9
D10V1, multiclass
        clus
vv       AMP PEAK 10(XP22.2) MUTATED AMP PEAK 10(XP22.2) WILD-TYPE
  CLUS_1                           2                            31
  CLUS_2                           2                            22
  CLUS_3                           1                            11
  CLUS_4                           8                             9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(XP22.2) MUTATED        0      2      8      2      1
  AMP PEAK 10(XP22.2) WILD-TYPE     20     22     10     11     10
D10V2, multiclass
        clus
vv       AMP PEAK 10(XP22.2) MUTATED AMP PEAK 10(XP22.2) WILD-TYPE
  CLUS_1                           0                            20
  CLUS_2                           2                            22
  CLUS_3                           8                            10
  CLUS_4                           2                            11
  CLUS_5                           1                            10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(XP22.2) MUTATED       92      3     31
  AMP PEAK 10(XP22.2) WILD-TYPE    190    307    259
D10V3, multiclass
        clus
vv       AMP PEAK 10(XP22.2) MUTATED AMP PEAK 10(XP22.2) WILD-TYPE
  CLUS_1                          92                           190
  CLUS_2                           3                           307
  CLUS_3                          31                           259
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(XP22.2) MUTATED       14      7     77
  AMP PEAK 10(XP22.2) WILD-TYPE    114    296    144
D10V4, multiclass
        clus
vv       AMP PEAK 10(XP22.2) MUTATED AMP PEAK 10(XP22.2) WILD-TYPE
  CLUS_1                          14                           114
  CLUS_2                           7                           296
  CLUS_3                          77                           144
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(XP22.2) MUTATED       13     18      8     87
  AMP PEAK 10(XP22.2) WILD-TYPE    106    177    289    181
D10V5, multiclass
        clus
vv       AMP PEAK 10(XP22.2) MUTATED AMP PEAK 10(XP22.2) WILD-TYPE
  CLUS_1                          13                           106
  CLUS_2                          18                           177
  CLUS_3                           8                           289
  CLUS_4                          87                           181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(XP22.2) MUTATED        8     16      4     16      4     78
  AMP PEAK 10(XP22.2) WILD-TYPE     80    129    203    143    107     91
D10V6, multiclass
        clus
vv       AMP PEAK 10(XP22.2) MUTATED AMP PEAK 10(XP22.2) WILD-TYPE
  CLUS_1                           8                            80
  CLUS_2                          16                           129
  CLUS_3                           4                           203
  CLUS_4                          16                           143
  CLUS_5                           4                           107
  CLUS_6                          78                            91
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(XP22.2) MUTATED       94     10     22
  AMP PEAK 10(XP22.2) WILD-TYPE    234    182    322
D10V7, multiclass
        clus
vv       AMP PEAK 10(XP22.2) MUTATED AMP PEAK 10(XP22.2) WILD-TYPE
  CLUS_1                          94                           234
  CLUS_2                          10                           182
  CLUS_3                          22                           322
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(XP22.2) MUTATED        7     38     81
  AMP PEAK 10(XP22.2) WILD-TYPE     70    543    125
D10V8, multiclass
        clus
vv       AMP PEAK 10(XP22.2) MUTATED AMP PEAK 10(XP22.2) WILD-TYPE
  CLUS_1                           7                            70
  CLUS_2                          38                           543
  CLUS_3                          81                           125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(XP22.2) MUTATED       54      9      4      5
  AMP PEAK 10(XP22.2) WILD-TYPE     99     61     59    120
D10V9, multiclass
        clus
vv       AMP PEAK 10(XP22.2) MUTATED AMP PEAK 10(XP22.2) WILD-TYPE
  CLUS_1                          54                            99
  CLUS_2                           9                            61
  CLUS_3                           4                            59
  CLUS_4                           5                           120
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(XP22.2) MUTATED       18     32     12      4      6
  AMP PEAK 10(XP22.2) WILD-TYPE     32     57     82    128     40
D10V10, multiclass
        clus
vv       AMP PEAK 10(XP22.2) MUTATED AMP PEAK 10(XP22.2) WILD-TYPE
  CLUS_1                          18                            32
  CLUS_2                          32                            57
  CLUS_3                          12                            82
  CLUS_4                           4                           128
  CLUS_5                           6                            40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = AMP PEAK 11(XP11.4) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(XP11.4) MUTATED        3      1      1      8
  AMP PEAK 11(XP11.4) WILD-TYPE     30     23     11      9
D11V1, multiclass
        clus
vv       AMP PEAK 11(XP11.4) MUTATED AMP PEAK 11(XP11.4) WILD-TYPE
  CLUS_1                           3                            30
  CLUS_2                           1                            23
  CLUS_3                           1                            11
  CLUS_4                           8                             9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(XP11.4) MUTATED        1      1      8      2      1
  AMP PEAK 11(XP11.4) WILD-TYPE     19     23     10     11     10
D11V2, multiclass
        clus
vv       AMP PEAK 11(XP11.4) MUTATED AMP PEAK 11(XP11.4) WILD-TYPE
  CLUS_1                           1                            19
  CLUS_2                           1                            23
  CLUS_3                           8                            10
  CLUS_4                           2                            11
  CLUS_5                           1                            10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(XP11.4) MUTATED      100      4     30
  AMP PEAK 11(XP11.4) WILD-TYPE    182    306    260
D11V3, multiclass
        clus
vv       AMP PEAK 11(XP11.4) MUTATED AMP PEAK 11(XP11.4) WILD-TYPE
  CLUS_1                         100                           182
  CLUS_2                           4                           306
  CLUS_3                          30                           260
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(XP11.4) MUTATED       14     11     84
  AMP PEAK 11(XP11.4) WILD-TYPE    114    292    137
D11V4, multiclass
        clus
vv       AMP PEAK 11(XP11.4) MUTATED AMP PEAK 11(XP11.4) WILD-TYPE
  CLUS_1                          14                           114
  CLUS_2                          11                           292
  CLUS_3                          84                           137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(XP11.4) MUTATED       11     21      8     94
  AMP PEAK 11(XP11.4) WILD-TYPE    108    174    289    174
D11V5, multiclass
        clus
vv       AMP PEAK 11(XP11.4) MUTATED AMP PEAK 11(XP11.4) WILD-TYPE
  CLUS_1                          11                           108
  CLUS_2                          21                           174
  CLUS_3                           8                           289
  CLUS_4                          94                           174
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(XP11.4) MUTATED        8     16      4     18      4     84
  AMP PEAK 11(XP11.4) WILD-TYPE     80    129    203    141    107     85
D11V6, multiclass
        clus
vv       AMP PEAK 11(XP11.4) MUTATED AMP PEAK 11(XP11.4) WILD-TYPE
  CLUS_1                           8                            80
  CLUS_2                          16                           129
  CLUS_3                           4                           203
  CLUS_4                          18                           141
  CLUS_5                           4                           107
  CLUS_6                          84                            85
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(XP11.4) MUTATED      100     10     23
  AMP PEAK 11(XP11.4) WILD-TYPE    228    182    321
D11V7, multiclass
        clus
vv       AMP PEAK 11(XP11.4) MUTATED AMP PEAK 11(XP11.4) WILD-TYPE
  CLUS_1                         100                           228
  CLUS_2                          10                           182
  CLUS_3                          23                           321
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(XP11.4) MUTATED        7     38     88
  AMP PEAK 11(XP11.4) WILD-TYPE     70    543    118
D11V8, multiclass
        clus
vv       AMP PEAK 11(XP11.4) MUTATED AMP PEAK 11(XP11.4) WILD-TYPE
  CLUS_1                           7                            70
  CLUS_2                          38                           543
  CLUS_3                          88                           118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(XP11.4) MUTATED       56      8      4      6
  AMP PEAK 11(XP11.4) WILD-TYPE     97     62     59    119
D11V9, multiclass
        clus
vv       AMP PEAK 11(XP11.4) MUTATED AMP PEAK 11(XP11.4) WILD-TYPE
  CLUS_1                          56                            97
  CLUS_2                           8                            62
  CLUS_3                           4                            59
  CLUS_4                           6                           119
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(XP11.4) MUTATED       19     34     10      5      6
  AMP PEAK 11(XP11.4) WILD-TYPE     31     55     84    127     40
D11V10, multiclass
        clus
vv       AMP PEAK 11(XP11.4) MUTATED AMP PEAK 11(XP11.4) WILD-TYPE
  CLUS_1                          19                            31
  CLUS_2                          34                            55
  CLUS_3                          10                            84
  CLUS_4                           5                           127
  CLUS_5                           6                            40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = AMP PEAK 12(XQ11.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(XQ11.2) MUTATED        2      0      1      9
  AMP PEAK 12(XQ11.2) WILD-TYPE     31     24     11      8
D12V1, multiclass
        clus
vv       AMP PEAK 12(XQ11.2) MUTATED AMP PEAK 12(XQ11.2) WILD-TYPE
  CLUS_1                           2                            31
  CLUS_2                           0                            24
  CLUS_3                           1                            11
  CLUS_4                           9                             8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(XQ11.2) MUTATED        0      0      9      2      1
  AMP PEAK 12(XQ11.2) WILD-TYPE     20     24      9     11     10
D12V2, multiclass
        clus
vv       AMP PEAK 12(XQ11.2) MUTATED AMP PEAK 12(XQ11.2) WILD-TYPE
  CLUS_1                           0                            20
  CLUS_2                           0                            24
  CLUS_3                           9                             9
  CLUS_4                           2                            11
  CLUS_5                           1                            10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(XQ11.2) MUTATED      103      5     27
  AMP PEAK 12(XQ11.2) WILD-TYPE    179    305    263
D12V3, multiclass
        clus
vv       AMP PEAK 12(XQ11.2) MUTATED AMP PEAK 12(XQ11.2) WILD-TYPE
  CLUS_1                         103                           179
  CLUS_2                           5                           305
  CLUS_3                          27                           263
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(XQ11.2) MUTATED       13      8     88
  AMP PEAK 12(XQ11.2) WILD-TYPE    115    295    133
D12V4, multiclass
        clus
vv       AMP PEAK 12(XQ11.2) MUTATED AMP PEAK 12(XQ11.2) WILD-TYPE
  CLUS_1                          13                           115
  CLUS_2                           8                           295
  CLUS_3                          88                           133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(XQ11.2) MUTATED       11     15     11     98
  AMP PEAK 12(XQ11.2) WILD-TYPE    108    180    286    170
D12V5, multiclass
        clus
vv       AMP PEAK 12(XQ11.2) MUTATED AMP PEAK 12(XQ11.2) WILD-TYPE
  CLUS_1                          11                           108
  CLUS_2                          15                           180
  CLUS_3                          11                           286
  CLUS_4                          98                           170
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(XQ11.2) MUTATED        8     16      5     12      6     88
  AMP PEAK 12(XQ11.2) WILD-TYPE     80    129    202    147    105     81
D12V6, multiclass
        clus
vv       AMP PEAK 12(XQ11.2) MUTATED AMP PEAK 12(XQ11.2) WILD-TYPE
  CLUS_1                           8                            80
  CLUS_2                          16                           129
  CLUS_3                           5                           202
  CLUS_4                          12                           147
  CLUS_5                           6                           105
  CLUS_6                          88                            81
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(XQ11.2) MUTATED      105     12     17
  AMP PEAK 12(XQ11.2) WILD-TYPE    223    180    327
D12V7, multiclass
        clus
vv       AMP PEAK 12(XQ11.2) MUTATED AMP PEAK 12(XQ11.2) WILD-TYPE
  CLUS_1                         105                           223
  CLUS_2                          12                           180
  CLUS_3                          17                           327
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(XQ11.2) MUTATED        7     34     93
  AMP PEAK 12(XQ11.2) WILD-TYPE     70    547    113
D12V8, multiclass
        clus
vv       AMP PEAK 12(XQ11.2) MUTATED AMP PEAK 12(XQ11.2) WILD-TYPE
  CLUS_1                           7                            70
  CLUS_2                          34                           547
  CLUS_3                          93                           113
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(XQ11.2) MUTATED       59      9      3      5
  AMP PEAK 12(XQ11.2) WILD-TYPE     94     61     60    120
D12V9, multiclass
        clus
vv       AMP PEAK 12(XQ11.2) MUTATED AMP PEAK 12(XQ11.2) WILD-TYPE
  CLUS_1                          59                            94
  CLUS_2                           9                            61
  CLUS_3                           3                            60
  CLUS_4                           5                           120
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(XQ11.2) MUTATED       19     35     11      5      6
  AMP PEAK 12(XQ11.2) WILD-TYPE     31     54     83    127     40
D12V10, multiclass
        clus
vv       AMP PEAK 12(XQ11.2) MUTATED AMP PEAK 12(XQ11.2) WILD-TYPE
  CLUS_1                          19                            31
  CLUS_2                          35                            54
  CLUS_3                          11                            83
  CLUS_4                           5                           127
  CLUS_5                           6                            40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = AMP PEAK 13(XQ28) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(XQ28) MUTATED        2      0      2      8
  AMP PEAK 13(XQ28) WILD-TYPE     31     24     10      9
D13V1, multiclass
        clus
vv       AMP PEAK 13(XQ28) MUTATED AMP PEAK 13(XQ28) WILD-TYPE
  CLUS_1                         2                          31
  CLUS_2                         0                          24
  CLUS_3                         2                          10
  CLUS_4                         8                           9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(XQ28) MUTATED        1      0      8      1      2
  AMP PEAK 13(XQ28) WILD-TYPE     19     24     10     12      9
D13V2, multiclass
        clus
vv       AMP PEAK 13(XQ28) MUTATED AMP PEAK 13(XQ28) WILD-TYPE
  CLUS_1                         1                          19
  CLUS_2                         0                          24
  CLUS_3                         8                          10
  CLUS_4                         1                          12
  CLUS_5                         2                           9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(XQ28) MUTATED       95     13     29
  AMP PEAK 13(XQ28) WILD-TYPE    187    297    261
D13V3, multiclass
        clus
vv       AMP PEAK 13(XQ28) MUTATED AMP PEAK 13(XQ28) WILD-TYPE
  CLUS_1                        95                         187
  CLUS_2                        13                         297
  CLUS_3                        29                         261
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(XQ28) MUTATED       16     22     77
  AMP PEAK 13(XQ28) WILD-TYPE    112    281    144
D13V4, multiclass
        clus
vv       AMP PEAK 13(XQ28) MUTATED AMP PEAK 13(XQ28) WILD-TYPE
  CLUS_1                        16                         112
  CLUS_2                        22                         281
  CLUS_3                        77                         144
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(XQ28) MUTATED       13     21     14     88
  AMP PEAK 13(XQ28) WILD-TYPE    106    174    283    180
D13V5, multiclass
        clus
vv       AMP PEAK 13(XQ28) MUTATED AMP PEAK 13(XQ28) WILD-TYPE
  CLUS_1                        13                         106
  CLUS_2                        21                         174
  CLUS_3                        14                         283
  CLUS_4                        88                         180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 13(XQ28) MUTATED        9     19      7     19      6     76
  AMP PEAK 13(XQ28) WILD-TYPE     79    126    200    140    105     93
D13V6, multiclass
        clus
vv       AMP PEAK 13(XQ28) MUTATED AMP PEAK 13(XQ28) WILD-TYPE
  CLUS_1                         9                          79
  CLUS_2                        19                         126
  CLUS_3                         7                         200
  CLUS_4                        19                         140
  CLUS_5                         6                         105
  CLUS_6                        76                          93
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(XQ28) MUTATED       97     17     22
  AMP PEAK 13(XQ28) WILD-TYPE    231    175    322
D13V7, multiclass
        clus
vv       AMP PEAK 13(XQ28) MUTATED AMP PEAK 13(XQ28) WILD-TYPE
  CLUS_1                        97                         231
  CLUS_2                        17                         175
  CLUS_3                        22                         322
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(XQ28) MUTATED        8     47     81
  AMP PEAK 13(XQ28) WILD-TYPE     69    534    125
D13V8, multiclass
        clus
vv       AMP PEAK 13(XQ28) MUTATED AMP PEAK 13(XQ28) WILD-TYPE
  CLUS_1                         8                          69
  CLUS_2                        47                         534
  CLUS_3                        81                         125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(XQ28) MUTATED       52     10      5     10
  AMP PEAK 13(XQ28) WILD-TYPE    101     60     58    115
D13V9, multiclass
        clus
vv       AMP PEAK 13(XQ28) MUTATED AMP PEAK 13(XQ28) WILD-TYPE
  CLUS_1                        52                         101
  CLUS_2                        10                          60
  CLUS_3                         5                          58
  CLUS_4                        10                         115
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(XQ28) MUTATED       20     28     13     10      6
  AMP PEAK 13(XQ28) WILD-TYPE     30     61     81    122     40
D13V10, multiclass
        clus
vv       AMP PEAK 13(XQ28) MUTATED AMP PEAK 13(XQ28) WILD-TYPE
  CLUS_1                        20                          30
  CLUS_2                        28                          61
  CLUS_3                        13                          81
  CLUS_4                        10                         122
  CLUS_5                         6                          40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = DEL PEAK  1(1P36.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.31) MUTATED        2      7      8      4
  DEL PEAK  1(1P36.31) WILD-TYPE     31     17      4     13
D14V1, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                            2                             31
  CLUS_2                            7                             17
  CLUS_3                            8                              4
  CLUS_4                            4                             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.31) MUTATED        1      7      5      1      7
  DEL PEAK  1(1P36.31) WILD-TYPE     19     17     13     12      4
D14V2, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                            1                             19
  CLUS_2                            7                             17
  CLUS_3                            5                             13
  CLUS_4                            1                             12
  CLUS_5                            7                              4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.31) MUTATED       86     24     99
  DEL PEAK  1(1P36.31) WILD-TYPE    196    286    191
D14V3, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           86                            196
  CLUS_2                           24                            286
  CLUS_3                           99                            191
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.31) MUTATED       73     58     32
  DEL PEAK  1(1P36.31) WILD-TYPE     55    245    189
D14V4, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           73                             55
  CLUS_2                           58                            245
  CLUS_3                           32                            189
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.31) MUTATED       73     54     34     48
  DEL PEAK  1(1P36.31) WILD-TYPE     46    141    263    220
D14V5, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           73                             46
  CLUS_2                           54                            141
  CLUS_3                           34                            263
  CLUS_4                           48                            220
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.31) MUTATED       70     49     28     44      9      9
  DEL PEAK  1(1P36.31) WILD-TYPE     18     96    179    115    102    160
D14V6, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           70                             18
  CLUS_2                           49                             96
  CLUS_3                           28                            179
  CLUS_4                           44                            115
  CLUS_5                            9                            102
  CLUS_6                            9                            160
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.31) MUTATED      106     47     56
  DEL PEAK  1(1P36.31) WILD-TYPE    222    145    288
D14V7, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                          106                            222
  CLUS_2                           47                            145
  CLUS_3                           56                            288
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.31) MUTATED       68    113     28
  DEL PEAK  1(1P36.31) WILD-TYPE      9    468    178
D14V8, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           68                              9
  CLUS_2                          113                            468
  CLUS_3                           28                            178
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.31) MUTATED       19     43     17     20
  DEL PEAK  1(1P36.31) WILD-TYPE    134     27     46    105
D14V9, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           19                            134
  CLUS_2                           43                             27
  CLUS_3                           17                             46
  CLUS_4                           20                            105
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.31) MUTATED        3     13     25     19     39
  DEL PEAK  1(1P36.31) WILD-TYPE     47     76     69    113      7
D14V10, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                            3                             47
  CLUS_2                           13                             76
  CLUS_3                           25                             69
  CLUS_4                           19                            113
  CLUS_5                           39                              7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = DEL PEAK  2(1P31.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P31.1) MUTATED        2      4      7      2
  DEL PEAK  2(1P31.1) WILD-TYPE     31     20      5     15
D15V1, multiclass
        clus
vv       DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                           2                            31
  CLUS_2                           4                            20
  CLUS_3                           7                             5
  CLUS_4                           2                            15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P31.1) MUTATED        1      4      3      1      6
  DEL PEAK  2(1P31.1) WILD-TYPE     19     20     15     12      5
D15V2, multiclass
        clus
vv       DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                           1                            19
  CLUS_2                           4                            20
  CLUS_3                           3                            15
  CLUS_4                           1                            12
  CLUS_5                           6                             5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P31.1) MUTATED       79     12     75
  DEL PEAK  2(1P31.1) WILD-TYPE    203    298    215
D15V3, multiclass
        clus
vv       DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                          79                           203
  CLUS_2                          12                           298
  CLUS_3                          75                           215
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P31.1) MUTATED       69     41     21
  DEL PEAK  2(1P31.1) WILD-TYPE     59    262    200
D15V4, multiclass
        clus
vv       DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                          69                            59
  CLUS_2                          41                           262
  CLUS_3                          21                           200
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P31.1) MUTATED       73     34     28     31
  DEL PEAK  2(1P31.1) WILD-TYPE     46    161    269    237
D15V5, multiclass
        clus
vv       DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                          73                            46
  CLUS_2                          34                           161
  CLUS_3                          28                           269
  CLUS_4                          31                           237
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1P31.1) MUTATED       69     35     22     25      7      8
  DEL PEAK  2(1P31.1) WILD-TYPE     19    110    185    134    104    161
D15V6, multiclass
        clus
vv       DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                          69                            19
  CLUS_2                          35                           110
  CLUS_3                          22                           185
  CLUS_4                          25                           134
  CLUS_5                           7                           104
  CLUS_6                           8                           161
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P31.1) MUTATED       91     29     46
  DEL PEAK  2(1P31.1) WILD-TYPE    237    163    298
D15V7, multiclass
        clus
vv       DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                          91                           237
  CLUS_2                          29                           163
  CLUS_3                          46                           298
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P31.1) MUTATED       68     77     21
  DEL PEAK  2(1P31.1) WILD-TYPE      9    504    185
D15V8, multiclass
        clus
vv       DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                          68                             9
  CLUS_2                          77                           504
  CLUS_3                          21                           185
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P31.1) MUTATED       13     41     12     13
  DEL PEAK  2(1P31.1) WILD-TYPE    140     29     51    112
D15V9, multiclass
        clus
vv       DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                          13                           140
  CLUS_2                          41                            29
  CLUS_3                          12                            51
  CLUS_4                          13                           112
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P31.1) MUTATED        2     10     17     11     39
  DEL PEAK  2(1P31.1) WILD-TYPE     48     79     77    121      7
D15V10, multiclass
        clus
vv       DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                           2                            48
  CLUS_2                          10                            79
  CLUS_3                          17                            77
  CLUS_4                          11                           121
  CLUS_5                          39                             7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = DEL PEAK  3(1Q43) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1Q43) MUTATED        2      1      5      1
  DEL PEAK  3(1Q43) WILD-TYPE     31     23      7     16
D16V1, multiclass
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                         2                          31
  CLUS_2                         1                          23
  CLUS_3                         5                           7
  CLUS_4                         1                          16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(1Q43) MUTATED        1      1      1      1      5
  DEL PEAK  3(1Q43) WILD-TYPE     19     23     17     12      6
D16V2, multiclass
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                         1                          19
  CLUS_2                         1                          23
  CLUS_3                         1                          17
  CLUS_4                         1                          12
  CLUS_5                         5                           6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q43) MUTATED       75      4     35
  DEL PEAK  3(1Q43) WILD-TYPE    207    306    255
D16V3, multiclass
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                        75                         207
  CLUS_2                         4                         306
  CLUS_3                        35                         255
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q43) MUTATED       61     19     15
  DEL PEAK  3(1Q43) WILD-TYPE     67    284    206
D16V4, multiclass
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                        61                          67
  CLUS_2                        19                         284
  CLUS_3                        15                         206
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1Q43) MUTATED       64     13     19     18
  DEL PEAK  3(1Q43) WILD-TYPE     55    182    278    250
D16V5, multiclass
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                        64                          55
  CLUS_2                        13                         182
  CLUS_3                        19                         278
  CLUS_4                        18                         250
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(1Q43) MUTATED       64     15     12      8      7      8
  DEL PEAK  3(1Q43) WILD-TYPE     24    130    195    151    104    161
D16V6, multiclass
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                        64                          24
  CLUS_2                        15                         130
  CLUS_3                        12                         195
  CLUS_4                         8                         151
  CLUS_5                         7                         104
  CLUS_6                         8                         161
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q43) MUTATED       74     16     24
  DEL PEAK  3(1Q43) WILD-TYPE    254    176    320
D16V7, multiclass
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                        74                         254
  CLUS_2                        16                         176
  CLUS_3                        24                         320
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q43) MUTATED       64     34     16
  DEL PEAK  3(1Q43) WILD-TYPE     13    547    190
D16V8, multiclass
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                        64                          13
  CLUS_2                        34                         547
  CLUS_3                        16                         190
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1Q43) MUTATED        9     38      7      9
  DEL PEAK  3(1Q43) WILD-TYPE    144     32     56    116
D16V9, multiclass
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                         9                         144
  CLUS_2                        38                          32
  CLUS_3                         7                          56
  CLUS_4                         9                         116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(1Q43) MUTATED        3      6      6     10     38
  DEL PEAK  3(1Q43) WILD-TYPE     47     83     88    122      8
D16V10, multiclass
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                         3                          47
  CLUS_2                         6                          83
  CLUS_3                         6                          88
  CLUS_4                        10                         122
  CLUS_5                        38                           8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = DEL PEAK  4(2Q37.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q37.3) MUTATED        1      4      7      1
  DEL PEAK  4(2Q37.3) WILD-TYPE     32     20      5     16
D17V1, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           1                            32
  CLUS_2                           4                            20
  CLUS_3                           7                             5
  CLUS_4                           1                            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(2Q37.3) MUTATED        0      4      1      1      7
  DEL PEAK  4(2Q37.3) WILD-TYPE     20     20     17     12      4
D17V2, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           0                            20
  CLUS_2                           4                            20
  CLUS_3                           1                            17
  CLUS_4                           1                            12
  CLUS_5                           7                             4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.3) MUTATED       54     20     37
  DEL PEAK  4(2Q37.3) WILD-TYPE    228    290    253
D17V3, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          54                           228
  CLUS_2                          20                           290
  CLUS_3                          37                           253
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.3) MUTATED       56     26      6
  DEL PEAK  4(2Q37.3) WILD-TYPE     72    277    215
D17V4, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          56                            72
  CLUS_2                          26                           277
  CLUS_3                           6                           215
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q37.3) MUTATED       62     23     17      8
  DEL PEAK  4(2Q37.3) WILD-TYPE     57    172    280    260
D17V5, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          62                            57
  CLUS_2                          23                           172
  CLUS_3                          17                           280
  CLUS_4                           8                           260
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(2Q37.3) MUTATED       59     13     15     18      4      1
  DEL PEAK  4(2Q37.3) WILD-TYPE     29    132    192    141    107    168
D17V6, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          59                            29
  CLUS_2                          13                           132
  CLUS_3                          15                           192
  CLUS_4                          18                           141
  CLUS_5                           4                           107
  CLUS_6                           1                           168
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.3) MUTATED       66     17     26
  DEL PEAK  4(2Q37.3) WILD-TYPE    262    175    318
D17V7, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          66                           262
  CLUS_2                          17                           175
  CLUS_3                          26                           318
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.3) MUTATED       59     44      6
  DEL PEAK  4(2Q37.3) WILD-TYPE     18    537    200
D17V8, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          59                            18
  CLUS_2                          44                           537
  CLUS_3                           6                           200
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q37.3) MUTATED        6     37      6      8
  DEL PEAK  4(2Q37.3) WILD-TYPE    147     33     57    117
D17V9, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           6                           147
  CLUS_2                          37                            33
  CLUS_3                           6                            57
  CLUS_4                           8                           117
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(2Q37.3) MUTATED        0      6      7      8     36
  DEL PEAK  4(2Q37.3) WILD-TYPE     50     83     87    124     10
D17V10, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           0                            50
  CLUS_2                           6                            83
  CLUS_3                           7                            87
  CLUS_4                           8                           124
  CLUS_5                          36                            10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = DEL PEAK  5(3P26.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(3P26.3) MUTATED       32     23      3      0
  DEL PEAK  5(3P26.3) WILD-TYPE      1      1      9     17
D18V1, multiclass
        clus
vv       DEL PEAK  5(3P26.3) MUTATED DEL PEAK  5(3P26.3) WILD-TYPE
  CLUS_1                          32                             1
  CLUS_2                          23                             1
  CLUS_3                           3                             9
  CLUS_4                           0                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(3P26.3) MUTATED       20     23      1     12      2
  DEL PEAK  5(3P26.3) WILD-TYPE      0      1     17      1      9
D18V2, multiclass
        clus
vv       DEL PEAK  5(3P26.3) MUTATED DEL PEAK  5(3P26.3) WILD-TYPE
  CLUS_1                          20                             0
  CLUS_2                          23                             1
  CLUS_3                           1                            17
  CLUS_4                          12                             1
  CLUS_5                           2                             9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P26.3) MUTATED        3    216    270
  DEL PEAK  5(3P26.3) WILD-TYPE    279     94     20
D18V3, multiclass
        clus
vv       DEL PEAK  5(3P26.3) MUTATED DEL PEAK  5(3P26.3) WILD-TYPE
  CLUS_1                           3                           279
  CLUS_2                         216                            94
  CLUS_3                         270                            20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P26.3) MUTATED       17    273     14
  DEL PEAK  5(3P26.3) WILD-TYPE    111     30    207
D18V4, multiclass
        clus
vv       DEL PEAK  5(3P26.3) MUTATED DEL PEAK  5(3P26.3) WILD-TYPE
  CLUS_1                          17                           111
  CLUS_2                         273                            30
  CLUS_3                          14                           207
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(3P26.3) MUTATED       20    158    285     23
  DEL PEAK  5(3P26.3) WILD-TYPE     99     37     12    245
D18V5, multiclass
        clus
vv       DEL PEAK  5(3P26.3) MUTATED DEL PEAK  5(3P26.3) WILD-TYPE
  CLUS_1                          20                            99
  CLUS_2                         158                            37
  CLUS_3                         285                            12
  CLUS_4                          23                           245
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(3P26.3) MUTATED       11     28    196    144    104      3
  DEL PEAK  5(3P26.3) WILD-TYPE     77    117     11     15      7    166
D18V6, multiclass
        clus
vv       DEL PEAK  5(3P26.3) MUTATED DEL PEAK  5(3P26.3) WILD-TYPE
  CLUS_1                          11                            77
  CLUS_2                          28                           117
  CLUS_3                         196                            11
  CLUS_4                         144                            15
  CLUS_5                         104                             7
  CLUS_6                           3                           166
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P26.3) MUTATED       32    120    320
  DEL PEAK  5(3P26.3) WILD-TYPE    296     72     24
D18V7, multiclass
        clus
vv       DEL PEAK  5(3P26.3) MUTATED DEL PEAK  5(3P26.3) WILD-TYPE
  CLUS_1                          32                           296
  CLUS_2                         120                            72
  CLUS_3                         320                            24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P26.3) MUTATED       10    452     10
  DEL PEAK  5(3P26.3) WILD-TYPE     67    129    196
D18V8, multiclass
        clus
vv       DEL PEAK  5(3P26.3) MUTATED DEL PEAK  5(3P26.3) WILD-TYPE
  CLUS_1                          10                            67
  CLUS_2                         452                           129
  CLUS_3                          10                           196
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(3P26.3) MUTATED        8      8     17    113
  DEL PEAK  5(3P26.3) WILD-TYPE    145     62     46     12
D18V9, multiclass
        clus
vv       DEL PEAK  5(3P26.3) MUTATED DEL PEAK  5(3P26.3) WILD-TYPE
  CLUS_1                           8                           145
  CLUS_2                           8                            62
  CLUS_3                          17                            46
  CLUS_4                         113                            12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(3P26.3) MUTATED        1      5     17    117      6
  DEL PEAK  5(3P26.3) WILD-TYPE     49     84     77     15     40
D18V10, multiclass
        clus
vv       DEL PEAK  5(3P26.3) MUTATED DEL PEAK  5(3P26.3) WILD-TYPE
  CLUS_1                           1                            49
  CLUS_2                           5                            84
  CLUS_3                          17                            77
  CLUS_4                         117                            15
  CLUS_5                           6                            40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = DEL PEAK  6(3P21.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3P21.2) MUTATED       31     23      3      1
  DEL PEAK  6(3P21.2) WILD-TYPE      2      1      9     16
D19V1, multiclass
        clus
vv       DEL PEAK  6(3P21.2) MUTATED DEL PEAK  6(3P21.2) WILD-TYPE
  CLUS_1                          31                             2
  CLUS_2                          23                             1
  CLUS_3                           3                             9
  CLUS_4                           1                            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(3P21.2) MUTATED       20     23      2     11      2
  DEL PEAK  6(3P21.2) WILD-TYPE      0      1     16      2      9
D19V2, multiclass
        clus
vv       DEL PEAK  6(3P21.2) MUTATED DEL PEAK  6(3P21.2) WILD-TYPE
  CLUS_1                          20                             0
  CLUS_2                          23                             1
  CLUS_3                           2                            16
  CLUS_4                          11                             2
  CLUS_5                           2                             9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P21.2) MUTATED        5    220    278
  DEL PEAK  6(3P21.2) WILD-TYPE    277     90     12
D19V3, multiclass
        clus
vv       DEL PEAK  6(3P21.2) MUTATED DEL PEAK  6(3P21.2) WILD-TYPE
  CLUS_1                           5                           277
  CLUS_2                         220                            90
  CLUS_3                         278                            12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P21.2) MUTATED       19    281     15
  DEL PEAK  6(3P21.2) WILD-TYPE    109     22    206
D19V4, multiclass
        clus
vv       DEL PEAK  6(3P21.2) MUTATED DEL PEAK  6(3P21.2) WILD-TYPE
  CLUS_1                          19                           109
  CLUS_2                         281                            22
  CLUS_3                          15                           206
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3P21.2) MUTATED       22    163    289     26
  DEL PEAK  6(3P21.2) WILD-TYPE     97     32      8    242
D19V5, multiclass
        clus
vv       DEL PEAK  6(3P21.2) MUTATED DEL PEAK  6(3P21.2) WILD-TYPE
  CLUS_1                          22                            97
  CLUS_2                         163                            32
  CLUS_3                         289                             8
  CLUS_4                          26                           242
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(3P21.2) MUTATED       13     33    197    149    106      2
  DEL PEAK  6(3P21.2) WILD-TYPE     75    112     10     10      5    167
D19V6, multiclass
        clus
vv       DEL PEAK  6(3P21.2) MUTATED DEL PEAK  6(3P21.2) WILD-TYPE
  CLUS_1                          13                            75
  CLUS_2                          33                           112
  CLUS_3                         197                            10
  CLUS_4                         149                            10
  CLUS_5                         106                             5
  CLUS_6                           2                           167
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P21.2) MUTATED       36    121    329
  DEL PEAK  6(3P21.2) WILD-TYPE    292     71     15
D19V7, multiclass
        clus
vv       DEL PEAK  6(3P21.2) MUTATED DEL PEAK  6(3P21.2) WILD-TYPE
  CLUS_1                          36                           292
  CLUS_2                         121                            71
  CLUS_3                         329                            15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P21.2) MUTATED       12    465      9
  DEL PEAK  6(3P21.2) WILD-TYPE     65    116    197
D19V8, multiclass
        clus
vv       DEL PEAK  6(3P21.2) MUTATED DEL PEAK  6(3P21.2) WILD-TYPE
  CLUS_1                          12                            65
  CLUS_2                         465                           116
  CLUS_3                           9                           197
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3P21.2) MUTATED        9      9     18    115
  DEL PEAK  6(3P21.2) WILD-TYPE    144     61     45     10
D19V9, multiclass
        clus
vv       DEL PEAK  6(3P21.2) MUTATED DEL PEAK  6(3P21.2) WILD-TYPE
  CLUS_1                           9                           144
  CLUS_2                           9                            61
  CLUS_3                          18                            45
  CLUS_4                         115                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(3P21.2) MUTATED        0      6     20    118      7
  DEL PEAK  6(3P21.2) WILD-TYPE     50     83     74     14     39
D19V10, multiclass
        clus
vv       DEL PEAK  6(3P21.2) MUTATED DEL PEAK  6(3P21.2) WILD-TYPE
  CLUS_1                           0                            50
  CLUS_2                           6                            83
  CLUS_3                          20                            74
  CLUS_4                         118                            14
  CLUS_5                           7                            39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = DEL PEAK  7(3P14.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3P14.1) MUTATED       22     20      3      0
  DEL PEAK  7(3P14.1) WILD-TYPE     11      4      9     17
D20V1, multiclass
        clus
vv       DEL PEAK  7(3P14.1) MUTATED DEL PEAK  7(3P14.1) WILD-TYPE
  CLUS_1                          22                            11
  CLUS_2                          20                             4
  CLUS_3                           3                             9
  CLUS_4                           0                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(3P14.1) MUTATED       15     20      1      7      2
  DEL PEAK  7(3P14.1) WILD-TYPE      5      4     17      6      9
D20V2, multiclass
        clus
vv       DEL PEAK  7(3P14.1) MUTATED DEL PEAK  7(3P14.1) WILD-TYPE
  CLUS_1                          15                             5
  CLUS_2                          20                             4
  CLUS_3                           1                            17
  CLUS_4                           7                             6
  CLUS_5                           2                             9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3P14.1) MUTATED        2    153    253
  DEL PEAK  7(3P14.1) WILD-TYPE    280    157     37
D20V3, multiclass
        clus
vv       DEL PEAK  7(3P14.1) MUTATED DEL PEAK  7(3P14.1) WILD-TYPE
  CLUS_1                           2                           280
  CLUS_2                         153                           157
  CLUS_3                         253                            37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3P14.1) MUTATED       18    230     14
  DEL PEAK  7(3P14.1) WILD-TYPE    110     73    207
D20V4, multiclass
        clus
vv       DEL PEAK  7(3P14.1) MUTATED DEL PEAK  7(3P14.1) WILD-TYPE
  CLUS_1                          18                           110
  CLUS_2                         230                            73
  CLUS_3                          14                           207
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3P14.1) MUTATED       20    139    226     21
  DEL PEAK  7(3P14.1) WILD-TYPE     99     56     71    247
D20V5, multiclass
        clus
vv       DEL PEAK  7(3P14.1) MUTATED DEL PEAK  7(3P14.1) WILD-TYPE
  CLUS_1                          20                            99
  CLUS_2                         139                            56
  CLUS_3                         226                            71
  CLUS_4                          21                           247
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(3P14.1) MUTATED       12     28    164    124     76      2
  DEL PEAK  7(3P14.1) WILD-TYPE     76    117     43     35     35    167
D20V6, multiclass
        clus
vv       DEL PEAK  7(3P14.1) MUTATED DEL PEAK  7(3P14.1) WILD-TYPE
  CLUS_1                          12                            76
  CLUS_2                          28                           117
  CLUS_3                         164                            43
  CLUS_4                         124                            35
  CLUS_5                          76                            35
  CLUS_6                           2                           167
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3P14.1) MUTATED       31     98    266
  DEL PEAK  7(3P14.1) WILD-TYPE    297     94     78
D20V7, multiclass
        clus
vv       DEL PEAK  7(3P14.1) MUTATED DEL PEAK  7(3P14.1) WILD-TYPE
  CLUS_1                          31                           297
  CLUS_2                          98                            94
  CLUS_3                         266                            78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3P14.1) MUTATED       11    376      8
  DEL PEAK  7(3P14.1) WILD-TYPE     66    205    198
D20V8, multiclass
        clus
vv       DEL PEAK  7(3P14.1) MUTATED DEL PEAK  7(3P14.1) WILD-TYPE
  CLUS_1                          11                            66
  CLUS_2                         376                           205
  CLUS_3                           8                           198
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3P14.1) MUTATED        9      8     16     89
  DEL PEAK  7(3P14.1) WILD-TYPE    144     62     47     36
D20V9, multiclass
        clus
vv       DEL PEAK  7(3P14.1) MUTATED DEL PEAK  7(3P14.1) WILD-TYPE
  CLUS_1                           9                           144
  CLUS_2                           8                            62
  CLUS_3                          16                            47
  CLUS_4                          89                            36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(3P14.1) MUTATED        0      6     16     93      7
  DEL PEAK  7(3P14.1) WILD-TYPE     50     83     78     39     39
D20V10, multiclass
        clus
vv       DEL PEAK  7(3P14.1) MUTATED DEL PEAK  7(3P14.1) WILD-TYPE
  CLUS_1                           0                            50
  CLUS_2                           6                            83
  CLUS_3                          16                            78
  CLUS_4                          93                            39
  CLUS_5                           7                            39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = DEL PEAK  8(3P12.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(3P12.2) MUTATED       18     14      2      0
  DEL PEAK  8(3P12.2) WILD-TYPE     15     10     10     17
D21V1, multiclass
        clus
vv       DEL PEAK  8(3P12.2) MUTATED DEL PEAK  8(3P12.2) WILD-TYPE
  CLUS_1                          18                            15
  CLUS_2                          14                            10
  CLUS_3                           2                            10
  CLUS_4                           0                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(3P12.2) MUTATED       12     14      1      6      1
  DEL PEAK  8(3P12.2) WILD-TYPE      8     10     17      7     10
D21V2, multiclass
        clus
vv       DEL PEAK  8(3P12.2) MUTATED DEL PEAK  8(3P12.2) WILD-TYPE
  CLUS_1                          12                             8
  CLUS_2                          14                            10
  CLUS_3                           1                            17
  CLUS_4                           6                             7
  CLUS_5                           1                            10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3P12.2) MUTATED        2    106    228
  DEL PEAK  8(3P12.2) WILD-TYPE    280    204     62
D21V3, multiclass
        clus
vv       DEL PEAK  8(3P12.2) MUTATED DEL PEAK  8(3P12.2) WILD-TYPE
  CLUS_1                           2                           280
  CLUS_2                         106                           204
  CLUS_3                         228                            62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3P12.2) MUTATED       17    188     13
  DEL PEAK  8(3P12.2) WILD-TYPE    111    115    208
D21V4, multiclass
        clus
vv       DEL PEAK  8(3P12.2) MUTATED DEL PEAK  8(3P12.2) WILD-TYPE
  CLUS_1                          17                           111
  CLUS_2                         188                           115
  CLUS_3                          13                           208
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(3P12.2) MUTATED       18    119    180     18
  DEL PEAK  8(3P12.2) WILD-TYPE    101     76    117    250
D21V5, multiclass
        clus
vv       DEL PEAK  8(3P12.2) MUTATED DEL PEAK  8(3P12.2) WILD-TYPE
  CLUS_1                          18                           101
  CLUS_2                         119                            76
  CLUS_3                         180                           117
  CLUS_4                          18                           250
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(3P12.2) MUTATED       12     24    132    104     61      2
  DEL PEAK  8(3P12.2) WILD-TYPE     76    121     75     55     50    167
D21V6, multiclass
        clus
vv       DEL PEAK  8(3P12.2) MUTATED DEL PEAK  8(3P12.2) WILD-TYPE
  CLUS_1                          12                            76
  CLUS_2                          24                           121
  CLUS_3                         132                            75
  CLUS_4                         104                            55
  CLUS_5                          61                            50
  CLUS_6                           2                           167
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3P12.2) MUTATED       27     78    220
  DEL PEAK  8(3P12.2) WILD-TYPE    301    114    124
D21V7, multiclass
        clus
vv       DEL PEAK  8(3P12.2) MUTATED DEL PEAK  8(3P12.2) WILD-TYPE
  CLUS_1                          27                           301
  CLUS_2                          78                           114
  CLUS_3                         220                           124
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3P12.2) MUTATED       11    306      8
  DEL PEAK  8(3P12.2) WILD-TYPE     66    275    198
D21V8, multiclass
        clus
vv       DEL PEAK  8(3P12.2) MUTATED DEL PEAK  8(3P12.2) WILD-TYPE
  CLUS_1                          11                            66
  CLUS_2                         306                           275
  CLUS_3                           8                           198
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(3P12.2) MUTATED        8      7     12     78
  DEL PEAK  8(3P12.2) WILD-TYPE    145     63     51     47
D21V9, multiclass
        clus
vv       DEL PEAK  8(3P12.2) MUTATED DEL PEAK  8(3P12.2) WILD-TYPE
  CLUS_1                           8                           145
  CLUS_2                           7                            63
  CLUS_3                          12                            51
  CLUS_4                          78                            47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(3P12.2) MUTATED        0      6     14     78      7
  DEL PEAK  8(3P12.2) WILD-TYPE     50     83     80     54     39
D21V10, multiclass
        clus
vv       DEL PEAK  8(3P12.2) MUTATED DEL PEAK  8(3P12.2) WILD-TYPE
  CLUS_1                           0                            50
  CLUS_2                           6                            83
  CLUS_3                          14                            80
  CLUS_4                          78                            54
  CLUS_5                           7                            39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = DEL PEAK  9(4Q34.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(4Q34.3) MUTATED        6      5      1      1
  DEL PEAK  9(4Q34.3) WILD-TYPE     27     19     11     16
D22V1, multiclass
        clus
vv       DEL PEAK  9(4Q34.3) MUTATED DEL PEAK  9(4Q34.3) WILD-TYPE
  CLUS_1                           6                            27
  CLUS_2                           5                            19
  CLUS_3                           1                            11
  CLUS_4                           1                            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(4Q34.3) MUTATED        2      5      1      4      1
  DEL PEAK  9(4Q34.3) WILD-TYPE     18     19     17      9     10
D22V2, multiclass
        clus
vv       DEL PEAK  9(4Q34.3) MUTATED DEL PEAK  9(4Q34.3) WILD-TYPE
  CLUS_1                           2                            18
  CLUS_2                           5                            19
  CLUS_3                           1                            17
  CLUS_4                           4                             9
  CLUS_5                           1                            10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4Q34.3) MUTATED       23     11     79
  DEL PEAK  9(4Q34.3) WILD-TYPE    259    299    211
D22V3, multiclass
        clus
vv       DEL PEAK  9(4Q34.3) MUTATED DEL PEAK  9(4Q34.3) WILD-TYPE
  CLUS_1                          23                           259
  CLUS_2                          11                           299
  CLUS_3                          79                           211
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4Q34.3) MUTATED       17     54     15
  DEL PEAK  9(4Q34.3) WILD-TYPE    111    249    206
D22V4, multiclass
        clus
vv       DEL PEAK  9(4Q34.3) MUTATED DEL PEAK  9(4Q34.3) WILD-TYPE
  CLUS_1                          17                           111
  CLUS_2                          54                           249
  CLUS_3                          15                           206
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(4Q34.3) MUTATED        8     48     33     24
  DEL PEAK  9(4Q34.3) WILD-TYPE    111    147    264    244
D22V5, multiclass
        clus
vv       DEL PEAK  9(4Q34.3) MUTATED DEL PEAK  9(4Q34.3) WILD-TYPE
  CLUS_1                           8                           111
  CLUS_2                          48                           147
  CLUS_3                          33                           264
  CLUS_4                          24                           244
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(4Q34.3) MUTATED        2     36     25     37     11      2
  DEL PEAK  9(4Q34.3) WILD-TYPE     86    109    182    122    100    167
D22V6, multiclass
        clus
vv       DEL PEAK  9(4Q34.3) MUTATED DEL PEAK  9(4Q34.3) WILD-TYPE
  CLUS_1                           2                            86
  CLUS_2                          36                           109
  CLUS_3                          25                           182
  CLUS_4                          37                           122
  CLUS_5                          11                           100
  CLUS_6                           2                           167
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4Q34.3) MUTATED       30     37     45
  DEL PEAK  9(4Q34.3) WILD-TYPE    298    155    299
D22V7, multiclass
        clus
vv       DEL PEAK  9(4Q34.3) MUTATED DEL PEAK  9(4Q34.3) WILD-TYPE
  CLUS_1                          30                           298
  CLUS_2                          37                           155
  CLUS_3                          45                           299
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4Q34.3) MUTATED        2     98     12
  DEL PEAK  9(4Q34.3) WILD-TYPE     75    483    194
D22V8, multiclass
        clus
vv       DEL PEAK  9(4Q34.3) MUTATED DEL PEAK  9(4Q34.3) WILD-TYPE
  CLUS_1                           2                            75
  CLUS_2                          98                           483
  CLUS_3                          12                           194
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(4Q34.3) MUTATED       10      5     18     18
  DEL PEAK  9(4Q34.3) WILD-TYPE    143     65     45    107
D22V9, multiclass
        clus
vv       DEL PEAK  9(4Q34.3) MUTATED DEL PEAK  9(4Q34.3) WILD-TYPE
  CLUS_1                          10                           143
  CLUS_2                           5                            65
  CLUS_3                          18                            45
  CLUS_4                          18                           107
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(4Q34.3) MUTATED        0      7     23     19      2
  DEL PEAK  9(4Q34.3) WILD-TYPE     50     82     71    113     44
D22V10, multiclass
        clus
vv       DEL PEAK  9(4Q34.3) MUTATED DEL PEAK  9(4Q34.3) WILD-TYPE
  CLUS_1                           0                            50
  CLUS_2                           7                            82
  CLUS_3                          23                            71
  CLUS_4                          19                           113
  CLUS_5                           2                            44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = DEL PEAK 10(5P15.33) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(5P15.33) MUTATED        0      1      0      0
  DEL PEAK 10(5P15.33) WILD-TYPE     33     23     12     17
D23V1, multiclass
[1] "Remove cluster labels:"       "DEL PEAK 10(5P15.33) MUTATED"
clus
  DEL PEAK 10(5P15.33) MUTATED DEL PEAK 10(5P15.33) WILD-TYPE 
                             1                             85 
                    TCGA-A3-3306                     TCGA-A3-3307 
"DEL PEAK 10(5P15.33) WILD-TYPE" "DEL PEAK 10(5P15.33) WILD-TYPE" 
                    TCGA-A3-3308                     TCGA-A3-3311 
"DEL PEAK 10(5P15.33) WILD-TYPE" "DEL PEAK 10(5P15.33) WILD-TYPE" 
                    TCGA-A3-3313                     TCGA-A3-3316 
"DEL PEAK 10(5P15.33) WILD-TYPE" "DEL PEAK 10(5P15.33) WILD-TYPE" 
                    TCGA-A3-3317                     TCGA-A3-3319 
"DEL PEAK 10(5P15.33) WILD-TYPE" "DEL PEAK 10(5P15.33) WILD-TYPE" 
                    TCGA-A3-3320                     TCGA-A3-3322 
"DEL PEAK 10(5P15.33) WILD-TYPE" "DEL PEAK 10(5P15.33) WILD-TYPE" 
                    TCGA-A3-3323                     TCGA-A3-3324 
"DEL PEAK 10(5P15.33) WILD-TYPE" "DEL PEAK 10(5P15.33) WILD-TYPE" 
                    TCGA-A3-3325                     TCGA-A3-3326 
"DEL PEAK 10(5P15.33) WILD-TYPE" "DEL PEAK 10(5P15.33) WILD-TYPE" 
                    TCGA-A3-3331                     TCGA-A3-3335 
"DEL PEAK 10(5P15.33) WILD-TYPE" "DEL PEAK 10(5P15.33) WILD-TYPE" 
                    TCGA-A3-3336                     TCGA-A3-3343 
"DEL PEAK 10(5P15.33) WILD-TYPE" "DEL PEAK 10(5P15.33) WILD-TYPE" 
                    TCGA-A3-3346                     TCGA-A3-3347 
"DEL PEAK 10(5P15.33) WILD-TYPE" "DEL PEAK 10(5P15.33) WILD-TYPE" 
                    TCGA-A3-3349                     TCGA-A3-3351 
"DEL PEAK 10(5P15.33) WILD-TYPE" "DEL PEAK 10(5P15.33) WILD-TYPE" 
                    TCGA-A3-3352                     TCGA-A3-3359 
"DEL PEAK 10(5P15.33) WILD-TYPE" "DEL PEAK 10(5P15.33) WILD-TYPE" 
                    TCGA-A3-3362                     TCGA-A3-3363 
"DEL PEAK 10(5P15.33) WILD-TYPE" "DEL PEAK 10(5P15.33) WILD-TYPE" 
                    TCGA-A3-3365                     TCGA-A3-3372 
"DEL PEAK 10(5P15.33) WILD-TYPE" "DEL PEAK 10(5P15.33) WILD-TYPE" 
                    TCGA-A3-3374                     TCGA-A3-3378 
"DEL PEAK 10(5P15.33) WILD-TYPE" "DEL PEAK 10(5P15.33) WILD-TYPE" 
                    TCGA-A3-3380                     TCGA-A3-3382 
"DEL PEAK 10(5P15.33) WILD-TYPE" "DEL PEAK 10(5P15.33) WILD-TYPE" 
                    TCGA-A3-3383                     TCGA-AK-3426 
"DEL PEAK 10(5P15.33) WILD-TYPE" "DEL PEAK 10(5P15.33) WILD-TYPE" 
                    TCGA-AK-3427                     TCGA-AK-3440 
"DEL PEAK 10(5P15.33) WILD-TYPE" "DEL PEAK 10(5P15.33) WILD-TYPE" 
                    TCGA-AK-3443                     TCGA-AK-3444 
"DEL PEAK 10(5P15.33) WILD-TYPE" "DEL PEAK 10(5P15.33) WILD-TYPE" 
                    TCGA-AK-3447                     TCGA-AK-3453 
"DEL PEAK 10(5P15.33) WILD-TYPE" "DEL PEAK 10(5P15.33) WILD-TYPE" 
                    TCGA-AK-3455                     TCGA-AK-3456 
"DEL PEAK 10(5P15.33) WILD-TYPE" "DEL PEAK 10(5P15.33) WILD-TYPE" 
                    TCGA-AK-3465                     TCGA-AL-3466 
"DEL PEAK 10(5P15.33) WILD-TYPE" "DEL PEAK 10(5P15.33) WILD-TYPE" 
                    TCGA-AL-3467                     TCGA-AL-3468 
"DEL PEAK 10(5P15.33) WILD-TYPE" "DEL PEAK 10(5P15.33) WILD-TYPE" 
                    TCGA-AL-3471                     TCGA-AL-3472 
"DEL PEAK 10(5P15.33) WILD-TYPE" "DEL PEAK 10(5P15.33) WILD-TYPE" 
                    TCGA-AL-3473                     TCGA-AS-3777 
"DEL PEAK 10(5P15.33) WILD-TYPE" "DEL PEAK 10(5P15.33) WILD-TYPE" 
                    TCGA-AS-3778                     TCGA-B2-3923 
"DEL PEAK 10(5P15.33) WILD-TYPE" "DEL PEAK 10(5P15.33) WILD-TYPE" 
                    TCGA-B2-3924                     TCGA-B2-4098 
"DEL PEAK 10(5P15.33) WILD-TYPE" "DEL PEAK 10(5P15.33) WILD-TYPE" 
                    TCGA-B2-4099                     TCGA-B2-4102 
"DEL PEAK 10(5P15.33) WILD-TYPE" "DEL PEAK 10(5P15.33) WILD-TYPE" 
                    TCGA-B3-3925                     TCGA-B3-3926 
"DEL PEAK 10(5P15.33) WILD-TYPE" "DEL PEAK 10(5P15.33) WILD-TYPE" 
                    TCGA-B3-4103                     TCGA-B3-4104 
"DEL PEAK 10(5P15.33) WILD-TYPE" "DEL PEAK 10(5P15.33) WILD-TYPE" 
                    TCGA-B8-4148                     TCGA-B8-4151 
"DEL PEAK 10(5P15.33) WILD-TYPE" "DEL PEAK 10(5P15.33) WILD-TYPE" 
                    TCGA-B8-4154                     TCGA-B8-4619 
"DEL PEAK 10(5P15.33) WILD-TYPE" "DEL PEAK 10(5P15.33) WILD-TYPE" 
                    TCGA-B8-4620                     TCGA-B9-4113 
"DEL PEAK 10(5P15.33) WILD-TYPE" "DEL PEAK 10(5P15.33) WILD-TYPE" 
                    TCGA-B9-4114                     TCGA-B9-4115 
"DEL PEAK 10(5P15.33) WILD-TYPE" "DEL PEAK 10(5P15.33) WILD-TYPE" 
                    TCGA-B9-4116                     TCGA-B9-4117 
"DEL PEAK 10(5P15.33) WILD-TYPE" "DEL PEAK 10(5P15.33) WILD-TYPE" 
                    TCGA-B9-4617                     TCGA-BP-4161 
"DEL PEAK 10(5P15.33) WILD-TYPE" "DEL PEAK 10(5P15.33) WILD-TYPE" 
                    TCGA-BP-4162                     TCGA-BP-4163 
"DEL PEAK 10(5P15.33) WILD-TYPE" "DEL PEAK 10(5P15.33) WILD-TYPE" 
                    TCGA-BP-4164                     TCGA-BP-4167 
"DEL PEAK 10(5P15.33) WILD-TYPE" "DEL PEAK 10(5P15.33) WILD-TYPE" 
                    TCGA-CJ-4634                     TCGA-CJ-4636 
"DEL PEAK 10(5P15.33) WILD-TYPE" "DEL PEAK 10(5P15.33) WILD-TYPE" 
                    TCGA-CJ-4637                     TCGA-CJ-4638 
"DEL PEAK 10(5P15.33) WILD-TYPE" "DEL PEAK 10(5P15.33) WILD-TYPE" 
                    TCGA-CJ-4639                     TCGA-CJ-4640 
"DEL PEAK 10(5P15.33) WILD-TYPE" "DEL PEAK 10(5P15.33) WILD-TYPE" 
                    TCGA-CJ-4641                     TCGA-CJ-4643 
"DEL PEAK 10(5P15.33) WILD-TYPE" "DEL PEAK 10(5P15.33) WILD-TYPE" 
                    TCGA-CJ-4644 
"DEL PEAK 10(5P15.33) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(5P15.33) MUTATED        0      1      0      0      0
  DEL PEAK 10(5P15.33) WILD-TYPE     20     23     18     13     11
D23V2, multiclass
[1] "Remove cluster labels:"       "DEL PEAK 10(5P15.33) MUTATED"
clus
  DEL PEAK 10(5P15.33) MUTATED DEL PEAK 10(5P15.33) WILD-TYPE 
                             1                             85 
                    TCGA-A3-3306                     TCGA-A3-3307 
"DEL PEAK 10(5P15.33) WILD-TYPE" "DEL PEAK 10(5P15.33) WILD-TYPE" 
                    TCGA-A3-3308                     TCGA-A3-3311 
"DEL PEAK 10(5P15.33) WILD-TYPE" "DEL PEAK 10(5P15.33) WILD-TYPE" 
                    TCGA-A3-3313                     TCGA-A3-3316 
"DEL PEAK 10(5P15.33) WILD-TYPE" "DEL PEAK 10(5P15.33) WILD-TYPE" 
                    TCGA-A3-3317                     TCGA-A3-3319 
"DEL PEAK 10(5P15.33) WILD-TYPE" "DEL PEAK 10(5P15.33) WILD-TYPE" 
                    TCGA-A3-3320                     TCGA-A3-3322 
"DEL PEAK 10(5P15.33) WILD-TYPE" "DEL PEAK 10(5P15.33) WILD-TYPE" 
                    TCGA-A3-3323                     TCGA-A3-3324 
"DEL PEAK 10(5P15.33) WILD-TYPE" "DEL PEAK 10(5P15.33) WILD-TYPE" 
                    TCGA-A3-3325                     TCGA-A3-3326 
"DEL PEAK 10(5P15.33) WILD-TYPE" "DEL PEAK 10(5P15.33) WILD-TYPE" 
                    TCGA-A3-3331                     TCGA-A3-3335 
"DEL PEAK 10(5P15.33) WILD-TYPE" "DEL PEAK 10(5P15.33) WILD-TYPE" 
                    TCGA-A3-3336                     TCGA-A3-3343 
"DEL PEAK 10(5P15.33) WILD-TYPE" "DEL PEAK 10(5P15.33) WILD-TYPE" 
                    TCGA-A3-3346                     TCGA-A3-3347 
"DEL PEAK 10(5P15.33) WILD-TYPE" "DEL PEAK 10(5P15.33) WILD-TYPE" 
                    TCGA-A3-3349                     TCGA-A3-3351 
"DEL PEAK 10(5P15.33) WILD-TYPE" "DEL PEAK 10(5P15.33) WILD-TYPE" 
                    TCGA-A3-3352                     TCGA-A3-3359 
"DEL PEAK 10(5P15.33) WILD-TYPE" "DEL PEAK 10(5P15.33) WILD-TYPE" 
                    TCGA-A3-3362                     TCGA-A3-3363 
"DEL PEAK 10(5P15.33) WILD-TYPE" "DEL PEAK 10(5P15.33) WILD-TYPE" 
                    TCGA-A3-3365                     TCGA-A3-3372 
"DEL PEAK 10(5P15.33) WILD-TYPE" "DEL PEAK 10(5P15.33) WILD-TYPE" 
                    TCGA-A3-3374                     TCGA-A3-3378 
"DEL PEAK 10(5P15.33) WILD-TYPE" "DEL PEAK 10(5P15.33) WILD-TYPE" 
                    TCGA-A3-3380                     TCGA-A3-3382 
"DEL PEAK 10(5P15.33) WILD-TYPE" "DEL PEAK 10(5P15.33) WILD-TYPE" 
                    TCGA-A3-3383                     TCGA-AK-3426 
"DEL PEAK 10(5P15.33) WILD-TYPE" "DEL PEAK 10(5P15.33) WILD-TYPE" 
                    TCGA-AK-3427                     TCGA-AK-3440 
"DEL PEAK 10(5P15.33) WILD-TYPE" "DEL PEAK 10(5P15.33) WILD-TYPE" 
                    TCGA-AK-3443                     TCGA-AK-3444 
"DEL PEAK 10(5P15.33) WILD-TYPE" "DEL PEAK 10(5P15.33) WILD-TYPE" 
                    TCGA-AK-3447                     TCGA-AK-3453 
"DEL PEAK 10(5P15.33) WILD-TYPE" "DEL PEAK 10(5P15.33) WILD-TYPE" 
                    TCGA-AK-3455                     TCGA-AK-3456 
"DEL PEAK 10(5P15.33) WILD-TYPE" "DEL PEAK 10(5P15.33) WILD-TYPE" 
                    TCGA-AK-3465                     TCGA-AL-3466 
"DEL PEAK 10(5P15.33) WILD-TYPE" "DEL PEAK 10(5P15.33) WILD-TYPE" 
                    TCGA-AL-3467                     TCGA-AL-3468 
"DEL PEAK 10(5P15.33) WILD-TYPE" "DEL PEAK 10(5P15.33) WILD-TYPE" 
                    TCGA-AL-3471                     TCGA-AL-3472 
"DEL PEAK 10(5P15.33) WILD-TYPE" "DEL PEAK 10(5P15.33) WILD-TYPE" 
                    TCGA-AL-3473                     TCGA-AS-3777 
"DEL PEAK 10(5P15.33) WILD-TYPE" "DEL PEAK 10(5P15.33) WILD-TYPE" 
                    TCGA-AS-3778                     TCGA-B2-3923 
"DEL PEAK 10(5P15.33) WILD-TYPE" "DEL PEAK 10(5P15.33) WILD-TYPE" 
                    TCGA-B2-3924                     TCGA-B2-4098 
"DEL PEAK 10(5P15.33) WILD-TYPE" "DEL PEAK 10(5P15.33) WILD-TYPE" 
                    TCGA-B2-4099                     TCGA-B2-4102 
"DEL PEAK 10(5P15.33) WILD-TYPE" "DEL PEAK 10(5P15.33) WILD-TYPE" 
                    TCGA-B3-3925                     TCGA-B3-3926 
"DEL PEAK 10(5P15.33) WILD-TYPE" "DEL PEAK 10(5P15.33) WILD-TYPE" 
                    TCGA-B3-4103                     TCGA-B3-4104 
"DEL PEAK 10(5P15.33) WILD-TYPE" "DEL PEAK 10(5P15.33) WILD-TYPE" 
                    TCGA-B8-4148                     TCGA-B8-4151 
"DEL PEAK 10(5P15.33) WILD-TYPE" "DEL PEAK 10(5P15.33) WILD-TYPE" 
                    TCGA-B8-4154                     TCGA-B8-4619 
"DEL PEAK 10(5P15.33) WILD-TYPE" "DEL PEAK 10(5P15.33) WILD-TYPE" 
                    TCGA-B8-4620                     TCGA-B9-4113 
"DEL PEAK 10(5P15.33) WILD-TYPE" "DEL PEAK 10(5P15.33) WILD-TYPE" 
                    TCGA-B9-4114                     TCGA-B9-4115 
"DEL PEAK 10(5P15.33) WILD-TYPE" "DEL PEAK 10(5P15.33) WILD-TYPE" 
                    TCGA-B9-4116                     TCGA-B9-4117 
"DEL PEAK 10(5P15.33) WILD-TYPE" "DEL PEAK 10(5P15.33) WILD-TYPE" 
                    TCGA-B9-4617                     TCGA-BP-4161 
"DEL PEAK 10(5P15.33) WILD-TYPE" "DEL PEAK 10(5P15.33) WILD-TYPE" 
                    TCGA-BP-4162                     TCGA-BP-4163 
"DEL PEAK 10(5P15.33) WILD-TYPE" "DEL PEAK 10(5P15.33) WILD-TYPE" 
                    TCGA-BP-4164                     TCGA-BP-4167 
"DEL PEAK 10(5P15.33) WILD-TYPE" "DEL PEAK 10(5P15.33) WILD-TYPE" 
                    TCGA-CJ-4634                     TCGA-CJ-4636 
"DEL PEAK 10(5P15.33) WILD-TYPE" "DEL PEAK 10(5P15.33) WILD-TYPE" 
                    TCGA-CJ-4637                     TCGA-CJ-4638 
"DEL PEAK 10(5P15.33) WILD-TYPE" "DEL PEAK 10(5P15.33) WILD-TYPE" 
                    TCGA-CJ-4639                     TCGA-CJ-4640 
"DEL PEAK 10(5P15.33) WILD-TYPE" "DEL PEAK 10(5P15.33) WILD-TYPE" 
                    TCGA-CJ-4641                     TCGA-CJ-4643 
"DEL PEAK 10(5P15.33) WILD-TYPE" "DEL PEAK 10(5P15.33) WILD-TYPE" 
                    TCGA-CJ-4644 
"DEL PEAK 10(5P15.33) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(5P15.33) MUTATED       19      6      6
  DEL PEAK 10(5P15.33) WILD-TYPE    263    304    284
D23V3, multiclass
        clus
vv       DEL PEAK 10(5P15.33) MUTATED DEL PEAK 10(5P15.33) WILD-TYPE
  CLUS_1                           19                            263
  CLUS_2                            6                            304
  CLUS_3                            6                            284
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(5P15.33) MUTATED       16      4      9
  DEL PEAK 10(5P15.33) WILD-TYPE    112    299    212
D23V4, multiclass
        clus
vv       DEL PEAK 10(5P15.33) MUTATED DEL PEAK 10(5P15.33) WILD-TYPE
  CLUS_1                           16                            112
  CLUS_2                            4                            299
  CLUS_3                            9                            212
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(5P15.33) MUTATED       12      9      1      9
  DEL PEAK 10(5P15.33) WILD-TYPE    107    186    296    259
D23V5, multiclass
        clus
vv       DEL PEAK 10(5P15.33) MUTATED DEL PEAK 10(5P15.33) WILD-TYPE
  CLUS_1                           12                            107
  CLUS_2                            9                            186
  CLUS_3                            1                            296
  CLUS_4                            9                            259
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(5P15.33) MUTATED       11     12      2      4      0      2
  DEL PEAK 10(5P15.33) WILD-TYPE     77    133    205    155    111    167
D23V6, multiclass
        clus
vv       DEL PEAK 10(5P15.33) MUTATED DEL PEAK 10(5P15.33) WILD-TYPE
  CLUS_1                           11                             77
  CLUS_2                           12                            133
  CLUS_3                            2                            205
  CLUS_4                            4                            155
  CLUS_5                            0                            111
  CLUS_6                            2                            167
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(5P15.33) MUTATED       21      8      2
  DEL PEAK 10(5P15.33) WILD-TYPE    307    184    342
D23V7, multiclass
        clus
vv       DEL PEAK 10(5P15.33) MUTATED DEL PEAK 10(5P15.33) WILD-TYPE
  CLUS_1                           21                            307
  CLUS_2                            8                            184
  CLUS_3                            2                            342
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(5P15.33) MUTATED       11     14      6
  DEL PEAK 10(5P15.33) WILD-TYPE     66    567    200
D23V8, multiclass
        clus
vv       DEL PEAK 10(5P15.33) MUTATED DEL PEAK 10(5P15.33) WILD-TYPE
  CLUS_1                           11                             66
  CLUS_2                           14                            567
  CLUS_3                            6                            200
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(5P15.33) MUTATED        6     10      3      1
  DEL PEAK 10(5P15.33) WILD-TYPE    147     60     60    124
D23V9, multiclass
        clus
vv       DEL PEAK 10(5P15.33) MUTATED DEL PEAK 10(5P15.33) WILD-TYPE
  CLUS_1                            6                            147
  CLUS_2                           10                             60
  CLUS_3                            3                             60
  CLUS_4                            1                            124
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(5P15.33) MUTATED        1      3      7      1      8
  DEL PEAK 10(5P15.33) WILD-TYPE     49     86     87    131     38
D23V10, multiclass
        clus
vv       DEL PEAK 10(5P15.33) MUTATED DEL PEAK 10(5P15.33) WILD-TYPE
  CLUS_1                            1                             49
  CLUS_2                            3                             86
  CLUS_3                            7                             87
  CLUS_4                            1                            131
  CLUS_5                            8                             38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = DEL PEAK 11(6Q22.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(6Q22.31) MUTATED        8     13      8      1
  DEL PEAK 11(6Q22.31) WILD-TYPE     25     11      4     16
D24V1, multiclass
        clus
vv       DEL PEAK 11(6Q22.31) MUTATED DEL PEAK 11(6Q22.31) WILD-TYPE
  CLUS_1                            8                             25
  CLUS_2                           13                             11
  CLUS_3                            8                              4
  CLUS_4                            1                             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(6Q22.31) MUTATED        5     13      2      3      7
  DEL PEAK 11(6Q22.31) WILD-TYPE     15     11     16     10      4
D24V2, multiclass
        clus
vv       DEL PEAK 11(6Q22.31) MUTATED DEL PEAK 11(6Q22.31) WILD-TYPE
  CLUS_1                            5                             15
  CLUS_2                           13                             11
  CLUS_3                            2                             16
  CLUS_4                            3                             10
  CLUS_5                            7                              4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q22.31) MUTATED       66      3    158
  DEL PEAK 11(6Q22.31) WILD-TYPE    216    307    132
D24V3, multiclass
        clus
vv       DEL PEAK 11(6Q22.31) MUTATED DEL PEAK 11(6Q22.31) WILD-TYPE
  CLUS_1                           66                            216
  CLUS_2                            3                            307
  CLUS_3                          158                            132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q22.31) MUTATED       66     74     18
  DEL PEAK 11(6Q22.31) WILD-TYPE     62    229    203
D24V4, multiclass
        clus
vv       DEL PEAK 11(6Q22.31) MUTATED DEL PEAK 11(6Q22.31) WILD-TYPE
  CLUS_1                           66                             62
  CLUS_2                           74                            229
  CLUS_3                           18                            203
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(6Q22.31) MUTATED       68     70     63     24
  DEL PEAK 11(6Q22.31) WILD-TYPE     51    125    234    244
D24V5, multiclass
        clus
vv       DEL PEAK 11(6Q22.31) MUTATED DEL PEAK 11(6Q22.31) WILD-TYPE
  CLUS_1                           68                             51
  CLUS_2                           70                            125
  CLUS_3                           63                            234
  CLUS_4                           24                            244
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(6Q22.31) MUTATED       61     32     44     58     25      5
  DEL PEAK 11(6Q22.31) WILD-TYPE     27    113    163    101     86    164
D24V6, multiclass
        clus
vv       DEL PEAK 11(6Q22.31) MUTATED DEL PEAK 11(6Q22.31) WILD-TYPE
  CLUS_1                           61                             27
  CLUS_2                           32                            113
  CLUS_3                           44                            163
  CLUS_4                           58                            101
  CLUS_5                           25                             86
  CLUS_6                            5                            164
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q22.31) MUTATED       81     48     93
  DEL PEAK 11(6Q22.31) WILD-TYPE    247    144    251
D24V7, multiclass
        clus
vv       DEL PEAK 11(6Q22.31) MUTATED DEL PEAK 11(6Q22.31) WILD-TYPE
  CLUS_1                           81                            247
  CLUS_2                           48                            144
  CLUS_3                           93                            251
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q22.31) MUTATED       61    142     19
  DEL PEAK 11(6Q22.31) WILD-TYPE     16    439    187
D24V8, multiclass
        clus
vv       DEL PEAK 11(6Q22.31) MUTATED DEL PEAK 11(6Q22.31) WILD-TYPE
  CLUS_1                           61                             16
  CLUS_2                          142                            439
  CLUS_3                           19                            187
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(6Q22.31) MUTATED       10     39     15     27
  DEL PEAK 11(6Q22.31) WILD-TYPE    143     31     48     98
D24V9, multiclass
        clus
vv       DEL PEAK 11(6Q22.31) MUTATED DEL PEAK 11(6Q22.31) WILD-TYPE
  CLUS_1                           10                            143
  CLUS_2                           39                             31
  CLUS_3                           15                             48
  CLUS_4                           27                             98
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(6Q22.31) MUTATED        2      7     17     28     37
  DEL PEAK 11(6Q22.31) WILD-TYPE     48     82     77    104      9
D24V10, multiclass
        clus
vv       DEL PEAK 11(6Q22.31) MUTATED DEL PEAK 11(6Q22.31) WILD-TYPE
  CLUS_1                            2                             48
  CLUS_2                            7                             82
  CLUS_3                           17                             77
  CLUS_4                           28                            104
  CLUS_5                           37                              9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = DEL PEAK 12(6Q26) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(6Q26) MUTATED        7     12      8      1
  DEL PEAK 12(6Q26) WILD-TYPE     26     12      4     16
D25V1, multiclass
        clus
vv       DEL PEAK 12(6Q26) MUTATED DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                         7                          26
  CLUS_2                        12                          12
  CLUS_3                         8                           4
  CLUS_4                         1                          16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(6Q26) MUTATED        4     12      2      3      7
  DEL PEAK 12(6Q26) WILD-TYPE     16     12     16     10      4
D25V2, multiclass
        clus
vv       DEL PEAK 12(6Q26) MUTATED DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                         4                          16
  CLUS_2                        12                          12
  CLUS_3                         2                          16
  CLUS_4                         3                          10
  CLUS_5                         7                           4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6Q26) MUTATED       65      3    165
  DEL PEAK 12(6Q26) WILD-TYPE    217    307    125
D25V3, multiclass
        clus
vv       DEL PEAK 12(6Q26) MUTATED DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                        65                         217
  CLUS_2                         3                         307
  CLUS_3                       165                         125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6Q26) MUTATED       64     76     21
  DEL PEAK 12(6Q26) WILD-TYPE     64    227    200
D25V4, multiclass
        clus
vv       DEL PEAK 12(6Q26) MUTATED DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                        64                          64
  CLUS_2                        76                         227
  CLUS_3                        21                         200
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(6Q26) MUTATED       67     69     68     27
  DEL PEAK 12(6Q26) WILD-TYPE     52    126    229    241
D25V5, multiclass
        clus
vv       DEL PEAK 12(6Q26) MUTATED DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                        67                          52
  CLUS_2                        69                         126
  CLUS_3                        68                         229
  CLUS_4                        27                         241
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(6Q26) MUTATED       61     33     46     58     28      5
  DEL PEAK 12(6Q26) WILD-TYPE     27    112    161    101     83    164
D25V6, multiclass
        clus
vv       DEL PEAK 12(6Q26) MUTATED DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                        61                          27
  CLUS_2                        33                         112
  CLUS_3                        46                         161
  CLUS_4                        58                         101
  CLUS_5                        28                          83
  CLUS_6                         5                         164
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6Q26) MUTATED       83     48     98
  DEL PEAK 12(6Q26) WILD-TYPE    245    144    246
D25V7, multiclass
        clus
vv       DEL PEAK 12(6Q26) MUTATED DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                        83                         245
  CLUS_2                        48                         144
  CLUS_3                        98                         246
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6Q26) MUTATED       61    148     20
  DEL PEAK 12(6Q26) WILD-TYPE     16    433    186
D25V8, multiclass
        clus
vv       DEL PEAK 12(6Q26) MUTATED DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                        61                          16
  CLUS_2                       148                         433
  CLUS_3                        20                         186
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(6Q26) MUTATED       12     39     14     30
  DEL PEAK 12(6Q26) WILD-TYPE    141     31     49     95
D25V9, multiclass
        clus
vv       DEL PEAK 12(6Q26) MUTATED DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                        12                         141
  CLUS_2                        39                          31
  CLUS_3                        14                          49
  CLUS_4                        30                          95
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(6Q26) MUTATED        2      9     16     31     37
  DEL PEAK 12(6Q26) WILD-TYPE     48     80     78    101      9
D25V10, multiclass
        clus
vv       DEL PEAK 12(6Q26) MUTATED DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                         2                          48
  CLUS_2                         9                          80
  CLUS_3                        16                          78
  CLUS_4                        31                         101
  CLUS_5                        37                           9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = DEL PEAK 13(6Q26) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(6Q26) MUTATED        7     12      8      1
  DEL PEAK 13(6Q26) WILD-TYPE     26     12      4     16
D26V1, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                         7                          26
  CLUS_2                        12                          12
  CLUS_3                         8                           4
  CLUS_4                         1                          16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(6Q26) MUTATED        4     12      2      3      7
  DEL PEAK 13(6Q26) WILD-TYPE     16     12     16     10      4
D26V2, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                         4                          16
  CLUS_2                        12                          12
  CLUS_3                         2                          16
  CLUS_4                         3                          10
  CLUS_5                         7                           4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(6Q26) MUTATED       66      3    165
  DEL PEAK 13(6Q26) WILD-TYPE    216    307    125
D26V3, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                        66                         216
  CLUS_2                         3                         307
  CLUS_3                       165                         125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(6Q26) MUTATED       64     76     22
  DEL PEAK 13(6Q26) WILD-TYPE     64    227    199
D26V4, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                        64                          64
  CLUS_2                        76                         227
  CLUS_3                        22                         199
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(6Q26) MUTATED       67     70     67     28
  DEL PEAK 13(6Q26) WILD-TYPE     52    125    230    240
D26V5, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                        67                          52
  CLUS_2                        70                         125
  CLUS_3                        67                         230
  CLUS_4                        28                         240
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(6Q26) MUTATED       61     33     46     58     28      6
  DEL PEAK 13(6Q26) WILD-TYPE     27    112    161    101     83    163
D26V6, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                        61                          27
  CLUS_2                        33                         112
  CLUS_3                        46                         161
  CLUS_4                        58                         101
  CLUS_5                        28                          83
  CLUS_6                         6                         163
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(6Q26) MUTATED       84     48     98
  DEL PEAK 13(6Q26) WILD-TYPE    244    144    246
D26V7, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                        84                         244
  CLUS_2                        48                         144
  CLUS_3                        98                         246
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(6Q26) MUTATED       61    148     21
  DEL PEAK 13(6Q26) WILD-TYPE     16    433    185
D26V8, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                        61                          16
  CLUS_2                       148                         433
  CLUS_3                        21                         185
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(6Q26) MUTATED       12     39     14     30
  DEL PEAK 13(6Q26) WILD-TYPE    141     31     49     95
D26V9, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                        12                         141
  CLUS_2                        39                          31
  CLUS_3                        14                          49
  CLUS_4                        30                          95
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(6Q26) MUTATED        2      9     16     31     37
  DEL PEAK 13(6Q26) WILD-TYPE     48     80     78    101      9
D26V10, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                         2                          48
  CLUS_2                         9                          80
  CLUS_3                        16                          78
  CLUS_4                        31                         101
  CLUS_5                        37                           9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = DEL PEAK 14(8P23.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(8P23.2) MUTATED        6      7      4      3
  DEL PEAK 14(8P23.2) WILD-TYPE     27     17      8     14
D27V1, multiclass
        clus
vv       DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                           6                            27
  CLUS_2                           7                            17
  CLUS_3                           4                             8
  CLUS_4                           3                            14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(8P23.2) MUTATED        3      7      3      3      4
  DEL PEAK 14(8P23.2) WILD-TYPE     17     17     15     10      7
D27V2, multiclass
        clus
vv       DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                           3                            17
  CLUS_2                           7                            17
  CLUS_3                           3                            15
  CLUS_4                           3                            10
  CLUS_5                           4                             7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(8P23.2) MUTATED       27     44    113
  DEL PEAK 14(8P23.2) WILD-TYPE    255    266    177
D27V3, multiclass
        clus
vv       DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                          27                           255
  CLUS_2                          44                           266
  CLUS_3                         113                           177
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(8P23.2) MUTATED       21     85      8
  DEL PEAK 14(8P23.2) WILD-TYPE    107    218    213
D27V4, multiclass
        clus
vv       DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                          21                           107
  CLUS_2                          85                           218
  CLUS_3                           8                           213
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(8P23.2) MUTATED       21     73     75     14
  DEL PEAK 14(8P23.2) WILD-TYPE     98    122    222    254
D27V5, multiclass
        clus
vv       DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                          21                            98
  CLUS_2                          73                           122
  CLUS_3                          75                           222
  CLUS_4                          14                           254
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(8P23.2) MUTATED       17     16     59     62     25      4
  DEL PEAK 14(8P23.2) WILD-TYPE     71    129    148     97     86    165
D27V6, multiclass
        clus
vv       DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                          17                            71
  CLUS_2                          16                           129
  CLUS_3                          59                           148
  CLUS_4                          62                            97
  CLUS_5                          25                            86
  CLUS_6                           4                           165
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(8P23.2) MUTATED       31     53     97
  DEL PEAK 14(8P23.2) WILD-TYPE    297    139    247
D27V7, multiclass
        clus
vv       DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                          31                           297
  CLUS_2                          53                           139
  CLUS_3                          97                           247
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(8P23.2) MUTATED       16    158      7
  DEL PEAK 14(8P23.2) WILD-TYPE     61    423    199
D27V8, multiclass
        clus
vv       DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                          16                            61
  CLUS_2                         158                           423
  CLUS_3                           7                           199
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(8P23.2) MUTATED        7      9      8     36
  DEL PEAK 14(8P23.2) WILD-TYPE    146     61     55     89
D27V9, multiclass
        clus
vv       DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                           7                           146
  CLUS_2                           9                            61
  CLUS_3                           8                            55
  CLUS_4                          36                            89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(8P23.2) MUTATED        1      4     10     38      7
  DEL PEAK 14(8P23.2) WILD-TYPE     49     85     84     94     39
D27V10, multiclass
        clus
vv       DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                           1                            49
  CLUS_2                           4                            85
  CLUS_3                          10                            84
  CLUS_4                          38                            94
  CLUS_5                           7                            39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(28) Variable = DEL PEAK 15(9P23) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(9P23) MUTATED        5     12      1      3
  DEL PEAK 15(9P23) WILD-TYPE     28     12     11     14
D28V1, multiclass
        clus
vv       DEL PEAK 15(9P23) MUTATED DEL PEAK 15(9P23) WILD-TYPE
  CLUS_1                         5                          28
  CLUS_2                        12                          12
  CLUS_3                         1                          11
  CLUS_4                         3                          14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(9P23) MUTATED        4     12      3      1      1
  DEL PEAK 15(9P23) WILD-TYPE     16     12     15     12     10
D28V2, multiclass
        clus
vv       DEL PEAK 15(9P23) MUTATED DEL PEAK 15(9P23) WILD-TYPE
  CLUS_1                         4                          16
  CLUS_2                        12                          12
  CLUS_3                         3                          15
  CLUS_4                         1                          12
  CLUS_5                         1                          10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(9P23) MUTATED       23     32    143
  DEL PEAK 15(9P23) WILD-TYPE    259    278    147
D28V3, multiclass
        clus
vv       DEL PEAK 15(9P23) MUTATED DEL PEAK 15(9P23) WILD-TYPE
  CLUS_1                        23                         259
  CLUS_2                        32                         278
  CLUS_3                       143                         147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(9P23) MUTATED       24     93     21
  DEL PEAK 15(9P23) WILD-TYPE    104    210    200
D28V4, multiclass
        clus
vv       DEL PEAK 15(9P23) MUTATED DEL PEAK 15(9P23) WILD-TYPE
  CLUS_1                        24                         104
  CLUS_2                        93                         210
  CLUS_3                        21                         200
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(9P23) MUTATED       19    105     42     31
  DEL PEAK 15(9P23) WILD-TYPE    100     90    255    237
D28V5, multiclass
        clus
vv       DEL PEAK 15(9P23) MUTATED DEL PEAK 15(9P23) WILD-TYPE
  CLUS_1                        19                         100
  CLUS_2                       105                          90
  CLUS_3                        42                         255
  CLUS_4                        31                         237
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(9P23) MUTATED       11     39     44     88     10      5
  DEL PEAK 15(9P23) WILD-TYPE     77    106    163     71    101    164
D28V6, multiclass
        clus
vv       DEL PEAK 15(9P23) MUTATED DEL PEAK 15(9P23) WILD-TYPE
  CLUS_1                        11                          77
  CLUS_2                        39                         106
  CLUS_3                        44                         163
  CLUS_4                        88                          71
  CLUS_5                        10                         101
  CLUS_6                         5                         164
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(9P23) MUTATED       38     65     90
  DEL PEAK 15(9P23) WILD-TYPE    290    127    254
D28V7, multiclass
        clus
vv       DEL PEAK 15(9P23) MUTATED DEL PEAK 15(9P23) WILD-TYPE
  CLUS_1                        38                         290
  CLUS_2                        65                         127
  CLUS_3                        90                         254
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(9P23) MUTATED       10    167     16
  DEL PEAK 15(9P23) WILD-TYPE     67    414    190
D28V8, multiclass
        clus
vv       DEL PEAK 15(9P23) MUTATED DEL PEAK 15(9P23) WILD-TYPE
  CLUS_1                        10                          67
  CLUS_2                       167                         414
  CLUS_3                        16                         190
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(9P23) MUTATED       12     12     21     27
  DEL PEAK 15(9P23) WILD-TYPE    141     58     42     98
D28V9, multiclass
        clus
vv       DEL PEAK 15(9P23) MUTATED DEL PEAK 15(9P23) WILD-TYPE
  CLUS_1                        12                         141
  CLUS_2                        12                          58
  CLUS_3                        21                          42
  CLUS_4                        27                          98
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(9P23) MUTATED        2      8     26     30      6
  DEL PEAK 15(9P23) WILD-TYPE     48     81     68    102     40
D28V10, multiclass
        clus
vv       DEL PEAK 15(9P23) MUTATED DEL PEAK 15(9P23) WILD-TYPE
  CLUS_1                         2                          48
  CLUS_2                         8                          81
  CLUS_3                        26                          68
  CLUS_4                        30                         102
  CLUS_5                         6                          40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(29) Variable = DEL PEAK 16(9P21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(9P21.3) MUTATED        5     13      1      3
  DEL PEAK 16(9P21.3) WILD-TYPE     28     11     11     14
D29V1, multiclass
        clus
vv       DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                           5                            28
  CLUS_2                          13                            11
  CLUS_3                           1                            11
  CLUS_4                           3                            14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(9P21.3) MUTATED        4     13      3      1      1
  DEL PEAK 16(9P21.3) WILD-TYPE     16     11     15     12     10
D29V2, multiclass
        clus
vv       DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                           4                            16
  CLUS_2                          13                            11
  CLUS_3                           3                            15
  CLUS_4                           1                            12
  CLUS_5                           1                            10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(9P21.3) MUTATED       27     34    148
  DEL PEAK 16(9P21.3) WILD-TYPE    255    276    142
D29V3, multiclass
        clus
vv       DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                          27                           255
  CLUS_2                          34                           276
  CLUS_3                         148                           142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(9P21.3) MUTATED       29     94     22
  DEL PEAK 16(9P21.3) WILD-TYPE     99    209    199
D29V4, multiclass
        clus
vv       DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                          29                            99
  CLUS_2                          94                           209
  CLUS_3                          22                           199
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(9P21.3) MUTATED       20    113     43     32
  DEL PEAK 16(9P21.3) WILD-TYPE     99     82    254    236
D29V5, multiclass
        clus
vv       DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                          20                            99
  CLUS_2                         113                            82
  CLUS_3                          43                           254
  CLUS_4                          32                           236
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(9P21.3) MUTATED       11     45     45     92     10      5
  DEL PEAK 16(9P21.3) WILD-TYPE     77    100    162     67    101    164
D29V6, multiclass
        clus
vv       DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                          11                            77
  CLUS_2                          45                           100
  CLUS_3                          45                           162
  CLUS_4                          92                            67
  CLUS_5                          10                           101
  CLUS_6                           5                           164
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(9P21.3) MUTATED       40     74     89
  DEL PEAK 16(9P21.3) WILD-TYPE    288    118    255
D29V7, multiclass
        clus
vv       DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                          40                           288
  CLUS_2                          74                           118
  CLUS_3                          89                           255
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(9P21.3) MUTATED       10    176     17
  DEL PEAK 16(9P21.3) WILD-TYPE     67    405    189
D29V8, multiclass
        clus
vv       DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                          10                            67
  CLUS_2                         176                           405
  CLUS_3                          17                           189
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(9P21.3) MUTATED       11     12     24     29
  DEL PEAK 16(9P21.3) WILD-TYPE    142     58     39     96
D29V9, multiclass
        clus
vv       DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                          11                           142
  CLUS_2                          12                            58
  CLUS_3                          24                            39
  CLUS_4                          29                            96
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(9P21.3) MUTATED        2      7     29     32      6
  DEL PEAK 16(9P21.3) WILD-TYPE     48     82     65    100     40
D29V10, multiclass
        clus
vv       DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                           2                            48
  CLUS_2                           7                            82
  CLUS_3                          29                            65
  CLUS_4                          32                           100
  CLUS_5                           6                            40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(30) Variable = DEL PEAK 17(10Q23.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(10Q23.31) MUTATED        5      6      4      1
  DEL PEAK 17(10Q23.31) WILD-TYPE     28     18      8     16
D30V1, multiclass
        clus
vv       DEL PEAK 17(10Q23.31) MUTATED DEL PEAK 17(10Q23.31) WILD-TYPE
  CLUS_1                             5                              28
  CLUS_2                             6                              18
  CLUS_3                             4                               8
  CLUS_4                             1                              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(10Q23.31) MUTATED        2      6      1      3      4
  DEL PEAK 17(10Q23.31) WILD-TYPE     18     18     17     10      7
D30V2, multiclass
        clus
vv       DEL PEAK 17(10Q23.31) MUTATED DEL PEAK 17(10Q23.31) WILD-TYPE
  CLUS_1                             2                              18
  CLUS_2                             6                              18
  CLUS_3                             1                              17
  CLUS_4                             3                              10
  CLUS_5                             4                               7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(10Q23.31) MUTATED       57     17     90
  DEL PEAK 17(10Q23.31) WILD-TYPE    225    293    200
D30V3, multiclass
        clus
vv       DEL PEAK 17(10Q23.31) MUTATED DEL PEAK 17(10Q23.31) WILD-TYPE
  CLUS_1                            57                             225
  CLUS_2                            17                             293
  CLUS_3                            90                             200
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(10Q23.31) MUTATED       62     53     11
  DEL PEAK 17(10Q23.31) WILD-TYPE     66    250    210
D30V4, multiclass
        clus
vv       DEL PEAK 17(10Q23.31) MUTATED DEL PEAK 17(10Q23.31) WILD-TYPE
  CLUS_1                            62                              66
  CLUS_2                            53                             250
  CLUS_3                            11                             210
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(10Q23.31) MUTATED       64     44     41     14
  DEL PEAK 17(10Q23.31) WILD-TYPE     55    151    256    254
D30V5, multiclass
        clus
vv       DEL PEAK 17(10Q23.31) MUTATED DEL PEAK 17(10Q23.31) WILD-TYPE
  CLUS_1                            64                              55
  CLUS_2                            44                             151
  CLUS_3                            41                             256
  CLUS_4                            14                             254
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(10Q23.31) MUTATED       60     22     30     35     15      1
  DEL PEAK 17(10Q23.31) WILD-TYPE     28    123    177    124     96    168
D30V6, multiclass
        clus
vv       DEL PEAK 17(10Q23.31) MUTATED DEL PEAK 17(10Q23.31) WILD-TYPE
  CLUS_1                            60                              28
  CLUS_2                            22                             123
  CLUS_3                            30                             177
  CLUS_4                            35                             124
  CLUS_5                            15                              96
  CLUS_6                             1                             168
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(10Q23.31) MUTATED       70     37     55
  DEL PEAK 17(10Q23.31) WILD-TYPE    258    155    289
D30V7, multiclass
        clus
vv       DEL PEAK 17(10Q23.31) MUTATED DEL PEAK 17(10Q23.31) WILD-TYPE
  CLUS_1                            70                             258
  CLUS_2                            37                             155
  CLUS_3                            55                             289
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(10Q23.31) MUTATED       59     97      6
  DEL PEAK 17(10Q23.31) WILD-TYPE     18    484    200
D30V8, multiclass
        clus
vv       DEL PEAK 17(10Q23.31) MUTATED DEL PEAK 17(10Q23.31) WILD-TYPE
  CLUS_1                            59                              18
  CLUS_2                            97                             484
  CLUS_3                             6                             200
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(10Q23.31) MUTATED        3     39     11     17
  DEL PEAK 17(10Q23.31) WILD-TYPE    150     31     52    108
D30V9, multiclass
        clus
vv       DEL PEAK 17(10Q23.31) MUTATED DEL PEAK 17(10Q23.31) WILD-TYPE
  CLUS_1                             3                             150
  CLUS_2                            39                              31
  CLUS_3                            11                              52
  CLUS_4                            17                             108
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(10Q23.31) MUTATED        1      1     17     16     35
  DEL PEAK 17(10Q23.31) WILD-TYPE     49     88     77    116     11
D30V10, multiclass
        clus
vv       DEL PEAK 17(10Q23.31) MUTATED DEL PEAK 17(10Q23.31) WILD-TYPE
  CLUS_1                             1                              49
  CLUS_2                             1                              88
  CLUS_3                            17                              77
  CLUS_4                            16                             116
  CLUS_5                            35                              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(31) Variable = DEL PEAK 18(11Q21) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(11Q21) MUTATED        1      2      1      0
  DEL PEAK 18(11Q21) WILD-TYPE     32     22     11     17
D31V1, multiclass
        clus
vv       DEL PEAK 18(11Q21) MUTATED DEL PEAK 18(11Q21) WILD-TYPE
  CLUS_1                          1                           32
  CLUS_2                          2                           22
  CLUS_3                          1                           11
  CLUS_4                          0                           17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(11Q21) MUTATED        0      2      0      1      1
  DEL PEAK 18(11Q21) WILD-TYPE     20     22     18     12     10
D31V2, multiclass
        clus
vv       DEL PEAK 18(11Q21) MUTATED DEL PEAK 18(11Q21) WILD-TYPE
  CLUS_1                          0                           20
  CLUS_2                          2                           22
  CLUS_3                          0                           18
  CLUS_4                          1                           12
  CLUS_5                          1                           10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(11Q21) MUTATED       20      5     36
  DEL PEAK 18(11Q21) WILD-TYPE    262    305    254
D31V3, multiclass
        clus
vv       DEL PEAK 18(11Q21) MUTATED DEL PEAK 18(11Q21) WILD-TYPE
  CLUS_1                         20                          262
  CLUS_2                          5                          305
  CLUS_3                         36                          254
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(11Q21) MUTATED       16     17     19
  DEL PEAK 18(11Q21) WILD-TYPE    112    286    202
D31V4, multiclass
        clus
vv       DEL PEAK 18(11Q21) MUTATED DEL PEAK 18(11Q21) WILD-TYPE
  CLUS_1                         16                          112
  CLUS_2                         17                          286
  CLUS_3                         19                          202
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(11Q21) MUTATED       13     20      5     23
  DEL PEAK 18(11Q21) WILD-TYPE    106    175    292    245
D31V5, multiclass
        clus
vv       DEL PEAK 18(11Q21) MUTATED DEL PEAK 18(11Q21) WILD-TYPE
  CLUS_1                         13                          106
  CLUS_2                         20                          175
  CLUS_3                          5                          292
  CLUS_4                         23                          245
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(11Q21) MUTATED        9     25      4     15      2      6
  DEL PEAK 18(11Q21) WILD-TYPE     79    120    203    144    109    163
D31V6, multiclass
        clus
vv       DEL PEAK 18(11Q21) MUTATED DEL PEAK 18(11Q21) WILD-TYPE
  CLUS_1                          9                           79
  CLUS_2                         25                          120
  CLUS_3                          4                          203
  CLUS_4                         15                          144
  CLUS_5                          2                          109
  CLUS_6                          6                          163
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(11Q21) MUTATED       29     17     15
  DEL PEAK 18(11Q21) WILD-TYPE    299    175    329
D31V7, multiclass
        clus
vv       DEL PEAK 18(11Q21) MUTATED DEL PEAK 18(11Q21) WILD-TYPE
  CLUS_1                         29                          299
  CLUS_2                         17                          175
  CLUS_3                         15                          329
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(11Q21) MUTATED        9     39     13
  DEL PEAK 18(11Q21) WILD-TYPE     68    542    193
D31V8, multiclass
        clus
vv       DEL PEAK 18(11Q21) MUTATED DEL PEAK 18(11Q21) WILD-TYPE
  CLUS_1                          9                           68
  CLUS_2                         39                          542
  CLUS_3                         13                          193
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(11Q21) MUTATED        9      9     13      3
  DEL PEAK 18(11Q21) WILD-TYPE    144     61     50    122
D31V9, multiclass
        clus
vv       DEL PEAK 18(11Q21) MUTATED DEL PEAK 18(11Q21) WILD-TYPE
  CLUS_1                          9                          144
  CLUS_2                          9                           61
  CLUS_3                         13                           50
  CLUS_4                          3                          122
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(11Q21) MUTATED        1      6     17      2      8
  DEL PEAK 18(11Q21) WILD-TYPE     49     83     77    130     38
D31V10, multiclass
        clus
vv       DEL PEAK 18(11Q21) MUTATED DEL PEAK 18(11Q21) WILD-TYPE
  CLUS_1                          1                           49
  CLUS_2                          6                           83
  CLUS_3                         17                           77
  CLUS_4                          2                          130
  CLUS_5                          8                           38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(32) Variable = DEL PEAK 19(11Q23.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(11Q23.1) MUTATED        0      2      2      0
  DEL PEAK 19(11Q23.1) WILD-TYPE     33     22     10     17
D32V1, multiclass
        clus
vv       DEL PEAK 19(11Q23.1) MUTATED DEL PEAK 19(11Q23.1) WILD-TYPE
  CLUS_1                            0                             33
  CLUS_2                            2                             22
  CLUS_3                            2                             10
  CLUS_4                            0                             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(11Q23.1) MUTATED        0      2      0      0      2
  DEL PEAK 19(11Q23.1) WILD-TYPE     20     22     18     13      9
D32V2, multiclass
        clus
vv       DEL PEAK 19(11Q23.1) MUTATED DEL PEAK 19(11Q23.1) WILD-TYPE
  CLUS_1                            0                             20
  CLUS_2                            2                             22
  CLUS_3                            0                             18
  CLUS_4                            0                             13
  CLUS_5                            2                              9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(11Q23.1) MUTATED       22      7     42
  DEL PEAK 19(11Q23.1) WILD-TYPE    260    303    248
D32V3, multiclass
        clus
vv       DEL PEAK 19(11Q23.1) MUTATED DEL PEAK 19(11Q23.1) WILD-TYPE
  CLUS_1                           22                            260
  CLUS_2                            7                            303
  CLUS_3                           42                            248
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(11Q23.1) MUTATED       18     22     21
  DEL PEAK 19(11Q23.1) WILD-TYPE    110    281    200
D32V4, multiclass
        clus
vv       DEL PEAK 19(11Q23.1) MUTATED DEL PEAK 19(11Q23.1) WILD-TYPE
  CLUS_1                           18                            110
  CLUS_2                           22                            281
  CLUS_3                           21                            200
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(11Q23.1) MUTATED       13     25      6     27
  DEL PEAK 19(11Q23.1) WILD-TYPE    106    170    291    241
D32V5, multiclass
        clus
vv       DEL PEAK 19(11Q23.1) MUTATED DEL PEAK 19(11Q23.1) WILD-TYPE
  CLUS_1                           13                            106
  CLUS_2                           25                            170
  CLUS_3                            6                            291
  CLUS_4                           27                            241
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(11Q23.1) MUTATED        8     30      7     18      1      7
  DEL PEAK 19(11Q23.1) WILD-TYPE     80    115    200    141    110    162
D32V6, multiclass
        clus
vv       DEL PEAK 19(11Q23.1) MUTATED DEL PEAK 19(11Q23.1) WILD-TYPE
  CLUS_1                            8                             80
  CLUS_2                           30                            115
  CLUS_3                            7                            200
  CLUS_4                           18                            141
  CLUS_5                            1                            110
  CLUS_6                            7                            162
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(11Q23.1) MUTATED       32     22     17
  DEL PEAK 19(11Q23.1) WILD-TYPE    296    170    327
D32V7, multiclass
        clus
vv       DEL PEAK 19(11Q23.1) MUTATED DEL PEAK 19(11Q23.1) WILD-TYPE
  CLUS_1                           32                            296
  CLUS_2                           22                            170
  CLUS_3                           17                            327
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(11Q23.1) MUTATED        8     47     16
  DEL PEAK 19(11Q23.1) WILD-TYPE     69    534    190
D32V8, multiclass
        clus
vv       DEL PEAK 19(11Q23.1) MUTATED DEL PEAK 19(11Q23.1) WILD-TYPE
  CLUS_1                            8                             69
  CLUS_2                           47                            534
  CLUS_3                           16                            190
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(11Q23.1) MUTATED        9      8     17      4
  DEL PEAK 19(11Q23.1) WILD-TYPE    144     62     46    121
D32V9, multiclass
        clus
vv       DEL PEAK 19(11Q23.1) MUTATED DEL PEAK 19(11Q23.1) WILD-TYPE
  CLUS_1                            9                            144
  CLUS_2                            8                             62
  CLUS_3                           17                             46
  CLUS_4                            4                            121
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(11Q23.1) MUTATED        1      6     21      3      7
  DEL PEAK 19(11Q23.1) WILD-TYPE     49     83     73    129     39
D32V10, multiclass
        clus
vv       DEL PEAK 19(11Q23.1) MUTATED DEL PEAK 19(11Q23.1) WILD-TYPE
  CLUS_1                            1                             49
  CLUS_2                            6                             83
  CLUS_3                           21                             73
  CLUS_4                            3                            129
  CLUS_5                            7                             39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(33) Variable = DEL PEAK 20(13Q12.13) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(13Q12.13) MUTATED        1      6      3      1
  DEL PEAK 20(13Q12.13) WILD-TYPE     32     18      9     16
D33V1, multiclass
        clus
vv       DEL PEAK 20(13Q12.13) MUTATED DEL PEAK 20(13Q12.13) WILD-TYPE
  CLUS_1                             1                              32
  CLUS_2                             6                              18
  CLUS_3                             3                               9
  CLUS_4                             1                              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(13Q12.13) MUTATED        0      6      1      1      3
  DEL PEAK 20(13Q12.13) WILD-TYPE     20     18     17     12      8
D33V2, multiclass
        clus
vv       DEL PEAK 20(13Q12.13) MUTATED DEL PEAK 20(13Q12.13) WILD-TYPE
  CLUS_1                             0                              20
  CLUS_2                             6                              18
  CLUS_3                             1                              17
  CLUS_4                             1                              12
  CLUS_5                             3                               8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(13Q12.13) MUTATED       62     12     76
  DEL PEAK 20(13Q12.13) WILD-TYPE    220    298    214
D33V3, multiclass
        clus
vv       DEL PEAK 20(13Q12.13) MUTATED DEL PEAK 20(13Q12.13) WILD-TYPE
  CLUS_1                            62                             220
  CLUS_2                            12                             298
  CLUS_3                            76                             214
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(13Q12.13) MUTATED       62     46     11
  DEL PEAK 20(13Q12.13) WILD-TYPE     66    257    210
D33V4, multiclass
        clus
vv       DEL PEAK 20(13Q12.13) MUTATED DEL PEAK 20(13Q12.13) WILD-TYPE
  CLUS_1                            62                              66
  CLUS_2                            46                             257
  CLUS_3                            11                             210
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(13Q12.13) MUTATED       56     57     21     16
  DEL PEAK 20(13Q12.13) WILD-TYPE     63    138    276    252
D33V5, multiclass
        clus
vv       DEL PEAK 20(13Q12.13) MUTATED DEL PEAK 20(13Q12.13) WILD-TYPE
  CLUS_1                            56                              63
  CLUS_2                            57                             138
  CLUS_3                            21                             276
  CLUS_4                            16                             252
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(13Q12.13) MUTATED       52     28     11     47     10      2
  DEL PEAK 20(13Q12.13) WILD-TYPE     36    117    196    112    101    167
D33V6, multiclass
        clus
vv       DEL PEAK 20(13Q12.13) MUTATED DEL PEAK 20(13Q12.13) WILD-TYPE
  CLUS_1                            52                              36
  CLUS_2                            28                             117
  CLUS_3                            11                             196
  CLUS_4                            47                             112
  CLUS_5                            10                             101
  CLUS_6                             2                             167
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(13Q12.13) MUTATED       67     42     39
  DEL PEAK 20(13Q12.13) WILD-TYPE    261    150    305
D33V7, multiclass
        clus
vv       DEL PEAK 20(13Q12.13) MUTATED DEL PEAK 20(13Q12.13) WILD-TYPE
  CLUS_1                            67                             261
  CLUS_2                            42                             150
  CLUS_3                            39                             305
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(13Q12.13) MUTATED       51     87     10
  DEL PEAK 20(13Q12.13) WILD-TYPE     26    494    196
D33V8, multiclass
        clus
vv       DEL PEAK 20(13Q12.13) MUTATED DEL PEAK 20(13Q12.13) WILD-TYPE
  CLUS_1                            51                              26
  CLUS_2                            87                             494
  CLUS_3                            10                             196
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(13Q12.13) MUTATED        7     33     19     13
  DEL PEAK 20(13Q12.13) WILD-TYPE    146     37     44    112
D33V9, multiclass
        clus
vv       DEL PEAK 20(13Q12.13) MUTATED DEL PEAK 20(13Q12.13) WILD-TYPE
  CLUS_1                             7                             146
  CLUS_2                            33                              37
  CLUS_3                            19                              44
  CLUS_4                            13                             112
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(13Q12.13) MUTATED        1      3     22     15     31
  DEL PEAK 20(13Q12.13) WILD-TYPE     49     86     72    117     15
D33V10, multiclass
        clus
vv       DEL PEAK 20(13Q12.13) MUTATED DEL PEAK 20(13Q12.13) WILD-TYPE
  CLUS_1                             1                              49
  CLUS_2                             3                              86
  CLUS_3                            22                              72
  CLUS_4                            15                             117
  CLUS_5                            31                              15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(34) Variable = DEL PEAK 21(13Q14.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(13Q14.2) MUTATED        1      7      3      1
  DEL PEAK 21(13Q14.2) WILD-TYPE     32     17      9     16
D34V1, multiclass
        clus
vv       DEL PEAK 21(13Q14.2) MUTATED DEL PEAK 21(13Q14.2) WILD-TYPE
  CLUS_1                            1                             32
  CLUS_2                            7                             17
  CLUS_3                            3                              9
  CLUS_4                            1                             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(13Q14.2) MUTATED        0      7      1      1      3
  DEL PEAK 21(13Q14.2) WILD-TYPE     20     17     17     12      8
D34V2, multiclass
        clus
vv       DEL PEAK 21(13Q14.2) MUTATED DEL PEAK 21(13Q14.2) WILD-TYPE
  CLUS_1                            0                             20
  CLUS_2                            7                             17
  CLUS_3                            1                             17
  CLUS_4                            1                             12
  CLUS_5                            3                              8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(13Q14.2) MUTATED       62     11     76
  DEL PEAK 21(13Q14.2) WILD-TYPE    220    299    214
D34V3, multiclass
        clus
vv       DEL PEAK 21(13Q14.2) MUTATED DEL PEAK 21(13Q14.2) WILD-TYPE
  CLUS_1                           62                            220
  CLUS_2                           11                            299
  CLUS_3                           76                            214
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(13Q14.2) MUTATED       62     45     10
  DEL PEAK 21(13Q14.2) WILD-TYPE     66    258    211
D34V4, multiclass
        clus
vv       DEL PEAK 21(13Q14.2) MUTATED DEL PEAK 21(13Q14.2) WILD-TYPE
  CLUS_1                           62                             66
  CLUS_2                           45                            258
  CLUS_3                           10                            211
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(13Q14.2) MUTATED       55     58     21     15
  DEL PEAK 21(13Q14.2) WILD-TYPE     64    137    276    253
D34V5, multiclass
        clus
vv       DEL PEAK 21(13Q14.2) MUTATED DEL PEAK 21(13Q14.2) WILD-TYPE
  CLUS_1                           55                             64
  CLUS_2                           58                            137
  CLUS_3                           21                            276
  CLUS_4                           15                            253
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(13Q14.2) MUTATED       51     28     10     47     11      2
  DEL PEAK 21(13Q14.2) WILD-TYPE     37    117    197    112    100    167
D34V6, multiclass
        clus
vv       DEL PEAK 21(13Q14.2) MUTATED DEL PEAK 21(13Q14.2) WILD-TYPE
  CLUS_1                           51                             37
  CLUS_2                           28                            117
  CLUS_3                           10                            197
  CLUS_4                           47                            112
  CLUS_5                           11                            100
  CLUS_6                            2                            167
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(13Q14.2) MUTATED       66     41     40
  DEL PEAK 21(13Q14.2) WILD-TYPE    262    151    304
D34V7, multiclass
        clus
vv       DEL PEAK 21(13Q14.2) MUTATED DEL PEAK 21(13Q14.2) WILD-TYPE
  CLUS_1                           66                            262
  CLUS_2                           41                            151
  CLUS_3                           40                            304
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(13Q14.2) MUTATED       50     86     11
  DEL PEAK 21(13Q14.2) WILD-TYPE     27    495    195
D34V8, multiclass
        clus
vv       DEL PEAK 21(13Q14.2) MUTATED DEL PEAK 21(13Q14.2) WILD-TYPE
  CLUS_1                           50                             27
  CLUS_2                           86                            495
  CLUS_3                           11                            195
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(13Q14.2) MUTATED        6     33     18     12
  DEL PEAK 21(13Q14.2) WILD-TYPE    147     37     45    113
D34V9, multiclass
        clus
vv       DEL PEAK 21(13Q14.2) MUTATED DEL PEAK 21(13Q14.2) WILD-TYPE
  CLUS_1                            6                            147
  CLUS_2                           33                             37
  CLUS_3                           18                             45
  CLUS_4                           12                            113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(13Q14.2) MUTATED        1      3     20     14     31
  DEL PEAK 21(13Q14.2) WILD-TYPE     49     86     74    118     15
D34V10, multiclass
        clus
vv       DEL PEAK 21(13Q14.2) MUTATED DEL PEAK 21(13Q14.2) WILD-TYPE
  CLUS_1                            1                             49
  CLUS_2                            3                             86
  CLUS_3                           20                             74
  CLUS_4                           14                            118
  CLUS_5                           31                             15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(35) Variable = DEL PEAK 22(14Q31.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(14Q31.1) MUTATED       10     19      2      4
  DEL PEAK 22(14Q31.1) WILD-TYPE     23      5     10     13
D35V1, multiclass
        clus
vv       DEL PEAK 22(14Q31.1) MUTATED DEL PEAK 22(14Q31.1) WILD-TYPE
  CLUS_1                           10                             23
  CLUS_2                           19                              5
  CLUS_3                            2                             10
  CLUS_4                            4                             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(14Q31.1) MUTATED        5     19      4      5      2
  DEL PEAK 22(14Q31.1) WILD-TYPE     15      5     14      8      9
D35V2, multiclass
        clus
vv       DEL PEAK 22(14Q31.1) MUTATED DEL PEAK 22(14Q31.1) WILD-TYPE
  CLUS_1                            5                             15
  CLUS_2                           19                              5
  CLUS_3                            4                             14
  CLUS_4                            5                              8
  CLUS_5                            2                              9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(14Q31.1) MUTATED       35     82    162
  DEL PEAK 22(14Q31.1) WILD-TYPE    247    228    128
D35V3, multiclass
        clus
vv       DEL PEAK 22(14Q31.1) MUTATED DEL PEAK 22(14Q31.1) WILD-TYPE
  CLUS_1                           35                            247
  CLUS_2                           82                            228
  CLUS_3                          162                            128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(14Q31.1) MUTATED       15    138     27
  DEL PEAK 22(14Q31.1) WILD-TYPE    113    165    194
D35V4, multiclass
        clus
vv       DEL PEAK 22(14Q31.1) MUTATED DEL PEAK 22(14Q31.1) WILD-TYPE
  CLUS_1                           15                            113
  CLUS_2                          138                            165
  CLUS_3                           27                            194
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(14Q31.1) MUTATED       11    120    103     42
  DEL PEAK 22(14Q31.1) WILD-TYPE    108     75    194    226
D35V5, multiclass
        clus
vv       DEL PEAK 22(14Q31.1) MUTATED DEL PEAK 22(14Q31.1) WILD-TYPE
  CLUS_1                           11                            108
  CLUS_2                          120                             75
  CLUS_3                          103                            194
  CLUS_4                           42                            226
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(14Q31.1) MUTATED        5     40     77    110     33     11
  DEL PEAK 22(14Q31.1) WILD-TYPE     83    105    130     49     78    158
D35V6, multiclass
        clus
vv       DEL PEAK 22(14Q31.1) MUTATED DEL PEAK 22(14Q31.1) WILD-TYPE
  CLUS_1                            5                             83
  CLUS_2                           40                            105
  CLUS_3                           77                            130
  CLUS_4                          110                             49
  CLUS_5                           33                             78
  CLUS_6                           11                            158
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(14Q31.1) MUTATED       43     78    152
  DEL PEAK 22(14Q31.1) WILD-TYPE    285    114    192
D35V7, multiclass
        clus
vv       DEL PEAK 22(14Q31.1) MUTATED DEL PEAK 22(14Q31.1) WILD-TYPE
  CLUS_1                           43                            285
  CLUS_2                           78                            114
  CLUS_3                          152                            192
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(14Q31.1) MUTATED        4    248     21
  DEL PEAK 22(14Q31.1) WILD-TYPE     73    333    185
D35V8, multiclass
        clus
vv       DEL PEAK 22(14Q31.1) MUTATED DEL PEAK 22(14Q31.1) WILD-TYPE
  CLUS_1                            4                             73
  CLUS_2                          248                            333
  CLUS_3                           21                            185
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(14Q31.1) MUTATED       15      5     23     50
  DEL PEAK 22(14Q31.1) WILD-TYPE    138     65     40     75
D35V9, multiclass
        clus
vv       DEL PEAK 22(14Q31.1) MUTATED DEL PEAK 22(14Q31.1) WILD-TYPE
  CLUS_1                           15                            138
  CLUS_2                            5                             65
  CLUS_3                           23                             40
  CLUS_4                           50                             75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(14Q31.1) MUTATED        5      8     23     55      2
  DEL PEAK 22(14Q31.1) WILD-TYPE     45     81     71     77     44
D35V10, multiclass
        clus
vv       DEL PEAK 22(14Q31.1) MUTATED DEL PEAK 22(14Q31.1) WILD-TYPE
  CLUS_1                            5                             45
  CLUS_2                            8                             81
  CLUS_3                           23                             71
  CLUS_4                           55                             77
  CLUS_5                            2                             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(36) Variable = DEL PEAK 23(16Q23.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(16Q23.3) MUTATED        2      1      0      0
  DEL PEAK 23(16Q23.3) WILD-TYPE     31     23     12     17
D36V1, multiclass
        clus
vv       DEL PEAK 23(16Q23.3) MUTATED DEL PEAK 23(16Q23.3) WILD-TYPE
  CLUS_1                            2                             31
  CLUS_2                            1                             23
  CLUS_3                            0                             12
  CLUS_4                            0                             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(16Q23.3) MUTATED        1      1      0      1      0
  DEL PEAK 23(16Q23.3) WILD-TYPE     19     23     18     12     11
D36V2, multiclass
        clus
vv       DEL PEAK 23(16Q23.3) MUTATED DEL PEAK 23(16Q23.3) WILD-TYPE
  CLUS_1                            1                             19
  CLUS_2                            1                             23
  CLUS_3                            0                             18
  CLUS_4                            1                             12
  CLUS_5                            0                             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(16Q23.3) MUTATED       10      7     20
  DEL PEAK 23(16Q23.3) WILD-TYPE    272    303    270
D36V3, multiclass
        clus
vv       DEL PEAK 23(16Q23.3) MUTATED DEL PEAK 23(16Q23.3) WILD-TYPE
  CLUS_1                           10                            272
  CLUS_2                            7                            303
  CLUS_3                           20                            270
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(16Q23.3) MUTATED       12     12      5
  DEL PEAK 23(16Q23.3) WILD-TYPE    116    291    216
D36V4, multiclass
        clus
vv       DEL PEAK 23(16Q23.3) MUTATED DEL PEAK 23(16Q23.3) WILD-TYPE
  CLUS_1                           12                            116
  CLUS_2                           12                            291
  CLUS_3                            5                            216
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(16Q23.3) MUTATED        8     14      8      7
  DEL PEAK 23(16Q23.3) WILD-TYPE    111    181    289    261
D36V5, multiclass
        clus
vv       DEL PEAK 23(16Q23.3) MUTATED DEL PEAK 23(16Q23.3) WILD-TYPE
  CLUS_1                            8                            111
  CLUS_2                           14                            181
  CLUS_3                            8                            289
  CLUS_4                            7                            261
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(16Q23.3) MUTATED        5     14      5     10      3      0
  DEL PEAK 23(16Q23.3) WILD-TYPE     83    131    202    149    108    169
D36V6, multiclass
        clus
vv       DEL PEAK 23(16Q23.3) MUTATED DEL PEAK 23(16Q23.3) WILD-TYPE
  CLUS_1                            5                             83
  CLUS_2                           14                            131
  CLUS_3                            5                            202
  CLUS_4                           10                            149
  CLUS_5                            3                            108
  CLUS_6                            0                            169
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(16Q23.3) MUTATED       14     12     10
  DEL PEAK 23(16Q23.3) WILD-TYPE    314    180    334
D36V7, multiclass
        clus
vv       DEL PEAK 23(16Q23.3) MUTATED DEL PEAK 23(16Q23.3) WILD-TYPE
  CLUS_1                           14                            314
  CLUS_2                           12                            180
  CLUS_3                           10                            334
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(16Q23.3) MUTATED        5     26      5
  DEL PEAK 23(16Q23.3) WILD-TYPE     72    555    201
D36V8, multiclass
        clus
vv       DEL PEAK 23(16Q23.3) MUTATED DEL PEAK 23(16Q23.3) WILD-TYPE
  CLUS_1                            5                             72
  CLUS_2                           26                            555
  CLUS_3                            5                            201
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(16Q23.3) MUTATED        4      6      5      8
  DEL PEAK 23(16Q23.3) WILD-TYPE    149     64     58    117
D36V9, multiclass
        clus
vv       DEL PEAK 23(16Q23.3) MUTATED DEL PEAK 23(16Q23.3) WILD-TYPE
  CLUS_1                            4                            149
  CLUS_2                            6                             64
  CLUS_3                            5                             58
  CLUS_4                            8                            117
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(16Q23.3) MUTATED        0      3     10      6      4
  DEL PEAK 23(16Q23.3) WILD-TYPE     50     86     84    126     42
D36V10, multiclass
        clus
vv       DEL PEAK 23(16Q23.3) MUTATED DEL PEAK 23(16Q23.3) WILD-TYPE
  CLUS_1                            0                             50
  CLUS_2                            3                             86
  CLUS_3                           10                             84
  CLUS_4                            6                            126
  CLUS_5                            4                             42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(37) Variable = DEL PEAK 24(18Q22.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(18Q22.2) MUTATED        2      7      3      3
  DEL PEAK 24(18Q22.2) WILD-TYPE     31     17      9     14
D37V1, multiclass
        clus
vv       DEL PEAK 24(18Q22.2) MUTATED DEL PEAK 24(18Q22.2) WILD-TYPE
  CLUS_1                            2                             31
  CLUS_2                            7                             17
  CLUS_3                            3                              9
  CLUS_4                            3                             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(18Q22.2) MUTATED        1      7      4      1      2
  DEL PEAK 24(18Q22.2) WILD-TYPE     19     17     14     12      9
D37V2, multiclass
        clus
vv       DEL PEAK 24(18Q22.2) MUTATED DEL PEAK 24(18Q22.2) WILD-TYPE
  CLUS_1                            1                             19
  CLUS_2                            7                             17
  CLUS_3                            4                             14
  CLUS_4                            1                             12
  CLUS_5                            2                              9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(18Q22.2) MUTATED       38     27     90
  DEL PEAK 24(18Q22.2) WILD-TYPE    244    283    200
D37V3, multiclass
        clus
vv       DEL PEAK 24(18Q22.2) MUTATED DEL PEAK 24(18Q22.2) WILD-TYPE
  CLUS_1                           38                            244
  CLUS_2                           27                            283
  CLUS_3                           90                            200
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(18Q22.2) MUTATED       24     63     27
  DEL PEAK 24(18Q22.2) WILD-TYPE    104    240    194
D37V4, multiclass
        clus
vv       DEL PEAK 24(18Q22.2) MUTATED DEL PEAK 24(18Q22.2) WILD-TYPE
  CLUS_1                           24                            104
  CLUS_2                           63                            240
  CLUS_3                           27                            194
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(18Q22.2) MUTATED       15     79     19     41
  DEL PEAK 24(18Q22.2) WILD-TYPE    104    116    278    227
D37V5, multiclass
        clus
vv       DEL PEAK 24(18Q22.2) MUTATED DEL PEAK 24(18Q22.2) WILD-TYPE
  CLUS_1                           15                            104
  CLUS_2                           79                            116
  CLUS_3                           19                            278
  CLUS_4                           41                            227
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 24(18Q22.2) MUTATED       12     45     18     62      8      9
  DEL PEAK 24(18Q22.2) WILD-TYPE     76    100    189     97    103    160
D37V6, multiclass
        clus
vv       DEL PEAK 24(18Q22.2) MUTATED DEL PEAK 24(18Q22.2) WILD-TYPE
  CLUS_1                           12                             76
  CLUS_2                           45                            100
  CLUS_3                           18                            189
  CLUS_4                           62                             97
  CLUS_5                            8                            103
  CLUS_6                            9                            160
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(18Q22.2) MUTATED       46     55     54
  DEL PEAK 24(18Q22.2) WILD-TYPE    282    137    290
D37V7, multiclass
        clus
vv       DEL PEAK 24(18Q22.2) MUTATED DEL PEAK 24(18Q22.2) WILD-TYPE
  CLUS_1                           46                            282
  CLUS_2                           55                            137
  CLUS_3                           54                            290
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(18Q22.2) MUTATED       12    122     21
  DEL PEAK 24(18Q22.2) WILD-TYPE     65    459    185
D37V8, multiclass
        clus
vv       DEL PEAK 24(18Q22.2) MUTATED DEL PEAK 24(18Q22.2) WILD-TYPE
  CLUS_1                           12                             65
  CLUS_2                          122                            459
  CLUS_3                           21                            185
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(18Q22.2) MUTATED       21     13     20     13
  DEL PEAK 24(18Q22.2) WILD-TYPE    132     57     43    112
D37V9, multiclass
        clus
vv       DEL PEAK 24(18Q22.2) MUTATED DEL PEAK 24(18Q22.2) WILD-TYPE
  CLUS_1                           21                            132
  CLUS_2                           13                             57
  CLUS_3                           20                             43
  CLUS_4                           13                            112
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(18Q22.2) MUTATED        1     13     30     15      8
  DEL PEAK 24(18Q22.2) WILD-TYPE     49     76     64    117     38
D37V10, multiclass
        clus
vv       DEL PEAK 24(18Q22.2) MUTATED DEL PEAK 24(18Q22.2) WILD-TYPE
  CLUS_1                            1                             49
  CLUS_2                           13                             76
  CLUS_3                           30                             64
  CLUS_4                           15                            117
  CLUS_5                            8                             38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(38) Variable = DEL PEAK 25(19P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(19P13.3) MUTATED        1      1      0      1
  DEL PEAK 25(19P13.3) WILD-TYPE     32     23     12     16
D38V1, multiclass
        clus
vv       DEL PEAK 25(19P13.3) MUTATED DEL PEAK 25(19P13.3) WILD-TYPE
  CLUS_1                            1                             32
  CLUS_2                            1                             23
  CLUS_3                            0                             12
  CLUS_4                            1                             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(19P13.3) MUTATED        0      1      1      1      0
  DEL PEAK 25(19P13.3) WILD-TYPE     20     23     17     12     11
D38V2, multiclass
        clus
vv       DEL PEAK 25(19P13.3) MUTATED DEL PEAK 25(19P13.3) WILD-TYPE
  CLUS_1                            0                             20
  CLUS_2                            1                             23
  CLUS_3                            1                             17
  CLUS_4                            1                             12
  CLUS_5                            0                             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(19P13.3) MUTATED       15      1     27
  DEL PEAK 25(19P13.3) WILD-TYPE    267    309    263
D38V3, multiclass
        clus
vv       DEL PEAK 25(19P13.3) MUTATED DEL PEAK 25(19P13.3) WILD-TYPE
  CLUS_1                           15                            267
  CLUS_2                            1                            309
  CLUS_3                           27                            263
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(19P13.3) MUTATED        9      6     21
  DEL PEAK 25(19P13.3) WILD-TYPE    119    297    200
D38V4, multiclass
        clus
vv       DEL PEAK 25(19P13.3) MUTATED DEL PEAK 25(19P13.3) WILD-TYPE
  CLUS_1                            9                            119
  CLUS_2                            6                            297
  CLUS_3                           21                            200
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(19P13.3) MUTATED        3     15      2     23
  DEL PEAK 25(19P13.3) WILD-TYPE    116    180    295    245
D38V5, multiclass
        clus
vv       DEL PEAK 25(19P13.3) MUTATED DEL PEAK 25(19P13.3) WILD-TYPE
  CLUS_1                            3                            116
  CLUS_2                           15                            180
  CLUS_3                            2                            295
  CLUS_4                           23                            245
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 25(19P13.3) MUTATED        2     22      1      9      1      8
  DEL PEAK 25(19P13.3) WILD-TYPE     86    123    206    150    110    161
D38V6, multiclass
        clus
vv       DEL PEAK 25(19P13.3) MUTATED DEL PEAK 25(19P13.3) WILD-TYPE
  CLUS_1                            2                             86
  CLUS_2                           22                            123
  CLUS_3                            1                            206
  CLUS_4                            9                            150
  CLUS_5                            1                            110
  CLUS_6                            8                            161
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(19P13.3) MUTATED       23     13      7
  DEL PEAK 25(19P13.3) WILD-TYPE    305    179    337
D38V7, multiclass
        clus
vv       DEL PEAK 25(19P13.3) MUTATED DEL PEAK 25(19P13.3) WILD-TYPE
  CLUS_1                           23                            305
  CLUS_2                           13                            179
  CLUS_3                            7                            337
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(19P13.3) MUTATED        2     30     11
  DEL PEAK 25(19P13.3) WILD-TYPE     75    551    195
D38V8, multiclass
        clus
vv       DEL PEAK 25(19P13.3) MUTATED DEL PEAK 25(19P13.3) WILD-TYPE
  CLUS_1                            2                             75
  CLUS_2                           30                            551
  CLUS_3                           11                            195
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(19P13.3) MUTATED       12      2     11      3
  DEL PEAK 25(19P13.3) WILD-TYPE    141     68     52    122
D38V9, multiclass
        clus
vv       DEL PEAK 25(19P13.3) MUTATED DEL PEAK 25(19P13.3) WILD-TYPE
  CLUS_1                           12                            141
  CLUS_2                            2                             68
  CLUS_3                           11                             52
  CLUS_4                            3                            122
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(19P13.3) MUTATED        1      7     16      2      2
  DEL PEAK 25(19P13.3) WILD-TYPE     49     82     78    130     44
D38V10, multiclass
        clus
vv       DEL PEAK 25(19P13.3) MUTATED DEL PEAK 25(19P13.3) WILD-TYPE
  CLUS_1                            1                             49
  CLUS_2                            7                             82
  CLUS_3                           16                             78
  CLUS_4                            2                            130
  CLUS_5                            2                             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(39) Variable = DEL PEAK 26(XP22.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(XP22.2) MUTATED        4      2      5      3
  DEL PEAK 26(XP22.2) WILD-TYPE     29     22      7     14
D39V1, multiclass
        clus
vv       DEL PEAK 26(XP22.2) MUTATED DEL PEAK 26(XP22.2) WILD-TYPE
  CLUS_1                           4                            29
  CLUS_2                           2                            22
  CLUS_3                           5                             7
  CLUS_4                           3                            14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(XP22.2) MUTATED        3      2      3      1      5
  DEL PEAK 26(XP22.2) WILD-TYPE     17     22     15     12      6
D39V2, multiclass
        clus
vv       DEL PEAK 26(XP22.2) MUTATED DEL PEAK 26(XP22.2) WILD-TYPE
  CLUS_1                           3                            17
  CLUS_2                           2                            22
  CLUS_3                           3                            15
  CLUS_4                           1                            12
  CLUS_5                           5                             6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(XP22.2) MUTATED       67     11     49
  DEL PEAK 26(XP22.2) WILD-TYPE    215    299    241
D39V3, multiclass
        clus
vv       DEL PEAK 26(XP22.2) MUTATED DEL PEAK 26(XP22.2) WILD-TYPE
  CLUS_1                          67                           215
  CLUS_2                          11                           299
  CLUS_3                          49                           241
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(XP22.2) MUTATED       55     34     16
  DEL PEAK 26(XP22.2) WILD-TYPE     73    269    205
D39V4, multiclass
        clus
vv       DEL PEAK 26(XP22.2) MUTATED DEL PEAK 26(XP22.2) WILD-TYPE
  CLUS_1                          55                            73
  CLUS_2                          34                           269
  CLUS_3                          16                           205
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(XP22.2) MUTATED       53     21     26     27
  DEL PEAK 26(XP22.2) WILD-TYPE     66    174    271    241
D39V5, multiclass
        clus
vv       DEL PEAK 26(XP22.2) MUTATED DEL PEAK 26(XP22.2) WILD-TYPE
  CLUS_1                          53                            66
  CLUS_2                          21                           174
  CLUS_3                          26                           271
  CLUS_4                          27                           241
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(XP22.2) MUTATED       50     30     19     15      7      6
  DEL PEAK 26(XP22.2) WILD-TYPE     38    115    188    144    104    163
D39V6, multiclass
        clus
vv       DEL PEAK 26(XP22.2) MUTATED DEL PEAK 26(XP22.2) WILD-TYPE
  CLUS_1                          50                            38
  CLUS_2                          30                           115
  CLUS_3                          19                           188
  CLUS_4                          15                           144
  CLUS_5                           7                           104
  CLUS_6                           6                           163
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(XP22.2) MUTATED       74     21     31
  DEL PEAK 26(XP22.2) WILD-TYPE    254    171    313
D39V7, multiclass
        clus
vv       DEL PEAK 26(XP22.2) MUTATED DEL PEAK 26(XP22.2) WILD-TYPE
  CLUS_1                          74                           254
  CLUS_2                          21                           171
  CLUS_3                          31                           313
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(XP22.2) MUTATED       49     62     15
  DEL PEAK 26(XP22.2) WILD-TYPE     28    519    191
D39V8, multiclass
        clus
vv       DEL PEAK 26(XP22.2) MUTATED DEL PEAK 26(XP22.2) WILD-TYPE
  CLUS_1                          49                            28
  CLUS_2                          62                           519
  CLUS_3                          15                           191
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(XP22.2) MUTATED        9     34      9     11
  DEL PEAK 26(XP22.2) WILD-TYPE    144     36     54    114
D39V9, multiclass
        clus
vv       DEL PEAK 26(XP22.2) MUTATED DEL PEAK 26(XP22.2) WILD-TYPE
  CLUS_1                           9                           144
  CLUS_2                          34                            36
  CLUS_3                           9                            54
  CLUS_4                          11                           114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(XP22.2) MUTATED        0      5     19     10     29
  DEL PEAK 26(XP22.2) WILD-TYPE     50     84     75    122     17
D39V10, multiclass
        clus
vv       DEL PEAK 26(XP22.2) MUTATED DEL PEAK 26(XP22.2) WILD-TYPE
  CLUS_1                           0                            50
  CLUS_2                           5                            84
  CLUS_3                          19                            75
  CLUS_4                          10                           122
  CLUS_5                          29                            17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
