[1] "ofn"         "-oTKIPAN-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/KIPAN-TP/15165233/KIPAN-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/KIPAN-TP/15639742/transformed.cor.cli.txt"

nPatients in clinical file=893, in cluster file=742, common to both=668
[1] "Reduce the number of clustering variables from 75 to 73."
[1]  73 668
[1] "TP53 MUTATION ANALYSIS"
[1] 3
  TP53 MUTATED TP53 WILD-TYPE 
            38            630 
  TP53 MUTATED TP53 WILD-TYPE 
            38            630 
[1] "PBRM1 MUTATION ANALYSIS"
[1] 3
  PBRM1 MUTATED PBRM1 WILD-TYPE 
            146             522 
  PBRM1 MUTATED PBRM1 WILD-TYPE 
            146             522 
[1] "PTEN MUTATION ANALYSIS"
[1] 3
  PTEN MUTATED PTEN WILD-TYPE 
            28            640 
  PTEN MUTATED PTEN WILD-TYPE 
            28            640 
[1] "BAP1 MUTATION ANALYSIS"
[1] 3
  BAP1 MUTATED BAP1 WILD-TYPE 
            49            619 
  BAP1 MUTATED BAP1 WILD-TYPE 
            49            619 
[1] "SETD2 MUTATION ANALYSIS"
[1] 3
  SETD2 MUTATED SETD2 WILD-TYPE 
             58             610 
  SETD2 MUTATED SETD2 WILD-TYPE 
             58             610 
[1] "KDM5C MUTATION ANALYSIS"
[1] 3
  KDM5C MUTATED KDM5C WILD-TYPE 
             30             638 
  KDM5C MUTATED KDM5C WILD-TYPE 
             30             638 
[1] "NEFH MUTATION ANALYSIS"
[1] 3
  NEFH MUTATED NEFH WILD-TYPE 
            15            653 
  NEFH MUTATED NEFH WILD-TYPE 
            15            653 
[1] "VHL MUTATION ANALYSIS"
[1] 3
  VHL MUTATED VHL WILD-TYPE 
          174           494 
  VHL MUTATED VHL WILD-TYPE 
          174           494 
[1] "NF2 MUTATION ANALYSIS"
[1] 3
  NF2 MUTATED NF2 WILD-TYPE 
           16           652 
  NF2 MUTATED NF2 WILD-TYPE 
           16           652 
[1] "HNRNPM MUTATION ANALYSIS"
[1] 3
  HNRNPM MUTATED HNRNPM WILD-TYPE 
              12              656 
  HNRNPM MUTATED HNRNPM WILD-TYPE 
              12              656 
[1] "MET MUTATION ANALYSIS"
[1] 3
  MET MUTATED MET WILD-TYPE 
           19           649 
  MET MUTATED MET WILD-TYPE 
           19           649 
[1] "MUC5B MUTATION ANALYSIS"
[1] 3
  MUC5B MUTATED MUC5B WILD-TYPE 
             30             638 
  MUC5B MUTATED MUC5B WILD-TYPE 
             30             638 
[1] "KDM6A MUTATION ANALYSIS"
[1] 3
  KDM6A MUTATED KDM6A WILD-TYPE 
             11             657 
  KDM6A MUTATED KDM6A WILD-TYPE 
             11             657 
[1] "TDG MUTATION ANALYSIS"
[1] 3
  TDG MUTATED TDG WILD-TYPE 
            5           663 
  TDG MUTATED TDG WILD-TYPE 
            5           663 
[1] "NFE2L2 MUTATION ANALYSIS"
[1] 3
  NFE2L2 MUTATED NFE2L2 WILD-TYPE 
              10              658 
  NFE2L2 MUTATED NFE2L2 WILD-TYPE 
              10              658 
[1] "ATM MUTATION ANALYSIS"
[1] 3
  ATM MUTATED ATM WILD-TYPE 
           16           652 
  ATM MUTATED ATM WILD-TYPE 
           16           652 
[1] "ZNF814 MUTATION ANALYSIS"
[1] 3
  ZNF814 MUTATED ZNF814 WILD-TYPE 
              13              655 
  ZNF814 MUTATED ZNF814 WILD-TYPE 
              13              655 
[1] "DNMT3A MUTATION ANALYSIS"
[1] 3
  DNMT3A MUTATED DNMT3A WILD-TYPE 
              10              658 
  DNMT3A MUTATED DNMT3A WILD-TYPE 
              10              658 
[1] "CDK12 MUTATION ANALYSIS"
[1] 3
  CDK12 MUTATED CDK12 WILD-TYPE 
              9             659 
  CDK12 MUTATED CDK12 WILD-TYPE 
              9             659 
[1] "CSGALNACT2 MUTATION ANALYSIS"
[1] 3
  CSGALNACT2 MUTATED CSGALNACT2 WILD-TYPE 
                   8                  660 
  CSGALNACT2 MUTATED CSGALNACT2 WILD-TYPE 
                   8                  660 
[1] "PIK3CA MUTATION ANALYSIS"
[1] 3
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              14              654 
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              14              654 
[1] "KIAA1751 MUTATION ANALYSIS"
[1] 3
  KIAA1751 MUTATED KIAA1751 WILD-TYPE 
                 8                660 
  KIAA1751 MUTATED KIAA1751 WILD-TYPE 
                 8                660 
[1] "MTOR MUTATION ANALYSIS"
[1] 3
  MTOR MUTATED MTOR WILD-TYPE 
            32            636 
  MTOR MUTATED MTOR WILD-TYPE 
            32            636 
[1] "RIMBP3 MUTATION ANALYSIS"
[1] 3
  RIMBP3 MUTATED RIMBP3 WILD-TYPE 
               5              663 
  RIMBP3 MUTATED RIMBP3 WILD-TYPE 
               5              663 
[1] "ZNF598 MUTATION ANALYSIS"
[1] 3
  ZNF598 MUTATED ZNF598 WILD-TYPE 
              11              657 
  ZNF598 MUTATED ZNF598 WILD-TYPE 
              11              657 
[1] "GPR50 MUTATION ANALYSIS"
[1] 3
  GPR50 MUTATED GPR50 WILD-TYPE 
              5             663 
  GPR50 MUTATED GPR50 WILD-TYPE 
              5             663 
[1] "CCDC120 MUTATION ANALYSIS"
[1] 3
  CCDC120 MUTATED CCDC120 WILD-TYPE 
                4               664 
  CCDC120 MUTATED CCDC120 WILD-TYPE 
                4               664 
[1] "SLC6A14 MUTATION ANALYSIS"
[1] 3
  SLC6A14 MUTATED SLC6A14 WILD-TYPE 
                5               663 
  SLC6A14 MUTATED SLC6A14 WILD-TYPE 
                5               663 
[1] "CYP4F11 MUTATION ANALYSIS"
[1] 3
  CYP4F11 MUTATED CYP4F11 WILD-TYPE 
                5               663 
  CYP4F11 MUTATED CYP4F11 WILD-TYPE 
                5               663 
[1] "STAG2 MUTATION ANALYSIS"
[1] 3
  STAG2 MUTATED STAG2 WILD-TYPE 
             14             654 
  STAG2 MUTATED STAG2 WILD-TYPE 
             14             654 
[1] "SKI MUTATION ANALYSIS"
[1] 3
  SKI MUTATED SKI WILD-TYPE 
            9           659 
  SKI MUTATED SKI WILD-TYPE 
            9           659 
[1] "ARID1A MUTATION ANALYSIS"
[1] 3
  ARID1A MUTATED ARID1A WILD-TYPE 
              19              649 
  ARID1A MUTATED ARID1A WILD-TYPE 
              19              649 
[1] "EGFR MUTATION ANALYSIS"
[1] 3
  EGFR MUTATED EGFR WILD-TYPE 
             7            661 
  EGFR MUTATED EGFR WILD-TYPE 
             7            661 
[1] "DPCR1 MUTATION ANALYSIS"
[1] 3
  DPCR1 MUTATED DPCR1 WILD-TYPE 
              8             660 
  DPCR1 MUTATED DPCR1 WILD-TYPE 
              8             660 
[1] "GUSB MUTATION ANALYSIS"
[1] 3
  GUSB MUTATED GUSB WILD-TYPE 
             4            664 
  GUSB MUTATED GUSB WILD-TYPE 
             4            664 
[1] "MED16 MUTATION ANALYSIS"
[1] 3
  MED16 MUTATED MED16 WILD-TYPE 
              4             664 
  MED16 MUTATED MED16 WILD-TYPE 
              4             664 
[1] "PTCH1 MUTATION ANALYSIS"
[1] 3
  PTCH1 MUTATED PTCH1 WILD-TYPE 
              8             660 
  PTCH1 MUTATED PTCH1 WILD-TYPE 
              8             660 
[1] "AHNAK2 MUTATION ANALYSIS"
[1] 3
  AHNAK2 MUTATED AHNAK2 WILD-TYPE 
              33              635 
  AHNAK2 MUTATED AHNAK2 WILD-TYPE 
              33              635 
[1] "RLIM MUTATION ANALYSIS"
[1] 3
  RLIM MUTATED RLIM WILD-TYPE 
             9            659 
  RLIM MUTATED RLIM WILD-TYPE 
             9            659 
[1] "SLC23A1 MUTATION ANALYSIS"
[1] 3
  SLC23A1 MUTATED SLC23A1 WILD-TYPE 
                7               661 
  SLC23A1 MUTATED SLC23A1 WILD-TYPE 
                7               661 
[1] "STAM MUTATION ANALYSIS"
[1] 3
  STAM MUTATED STAM WILD-TYPE 
             6            662 
  STAM MUTATED STAM WILD-TYPE 
             6            662 
[1] "RHEB MUTATION ANALYSIS"
[1] 3
  RHEB MUTATED RHEB WILD-TYPE 
             4            664 
  RHEB MUTATED RHEB WILD-TYPE 
             4            664 
[1] "SLC4A8 MUTATION ANALYSIS"
[1] 3
  SLC4A8 MUTATED SLC4A8 WILD-TYPE 
               6              662 
  SLC4A8 MUTATED SLC4A8 WILD-TYPE 
               6              662 
[1] "RUFY3 MUTATION ANALYSIS"
[1] 3
  RUFY3 MUTATED RUFY3 WILD-TYPE 
              7             661 
  RUFY3 MUTATED RUFY3 WILD-TYPE 
              7             661 
[1] "PCK1 MUTATION ANALYSIS"
[1] 3
  PCK1 MUTATED PCK1 WILD-TYPE 
             6            662 
  PCK1 MUTATED PCK1 WILD-TYPE 
             6            662 
[1] "TXNIP MUTATION ANALYSIS"
[1] 3
  TXNIP MUTATED TXNIP WILD-TYPE 
              8             660 
  TXNIP MUTATED TXNIP WILD-TYPE 
              8             660 
[1] "RNF128 MUTATION ANALYSIS"
[1] 3
  RNF128 MUTATED RNF128 WILD-TYPE 
               5              663 
  RNF128 MUTATED RNF128 WILD-TYPE 
               5              663 
[1] "ZFYVE26 MUTATION ANALYSIS"
[1] 3
  ZFYVE26 MUTATED ZFYVE26 WILD-TYPE 
                9               659 
  ZFYVE26 MUTATED ZFYVE26 WILD-TYPE 
                9               659 
[1] "FAM160B2 MUTATION ANALYSIS"
[1] 3
  FAM160B2 MUTATED FAM160B2 WILD-TYPE 
                 4                664 
  FAM160B2 MUTATED FAM160B2 WILD-TYPE 
                 4                664 
[1] "FAM47A MUTATION ANALYSIS"
[1] 3
  FAM47A MUTATED FAM47A WILD-TYPE 
               6              662 
  FAM47A MUTATED FAM47A WILD-TYPE 
               6              662 
[1] "ATP1A1 MUTATION ANALYSIS"
[1] 3
  ATP1A1 MUTATED ATP1A1 WILD-TYPE 
              10              658 
  ATP1A1 MUTATED ATP1A1 WILD-TYPE 
              10              658 
[1] "SH3BP2 MUTATION ANALYSIS"
[1] 3
  SH3BP2 MUTATED SH3BP2 WILD-TYPE 
               4              664 
  SH3BP2 MUTATED SH3BP2 WILD-TYPE 
               4              664 
[1] "FAM200A MUTATION ANALYSIS"
[1] 3
  FAM200A MUTATED FAM200A WILD-TYPE 
                5               663 
  FAM200A MUTATED FAM200A WILD-TYPE 
                5               663 
[1] "RTL1 MUTATION ANALYSIS"
[1] 3
  RTL1 MUTATED RTL1 WILD-TYPE 
             7            661 
  RTL1 MUTATED RTL1 WILD-TYPE 
             7            661 
[1] "NASP MUTATION ANALYSIS"
[1] 3
  NASP MUTATED NASP WILD-TYPE 
             4            664 
  NASP MUTATED NASP WILD-TYPE 
             4            664 
[1] "RPL7A MUTATION ANALYSIS"
[1] 3
  RPL7A MUTATED RPL7A WILD-TYPE 
              3             665 
  RPL7A MUTATED RPL7A WILD-TYPE 
              3             665 
[1] "UIMC1 MUTATION ANALYSIS"
[1] 3
  UIMC1 MUTATED UIMC1 WILD-TYPE 
              5             663 
  UIMC1 MUTATED UIMC1 WILD-TYPE 
              5             663 
[1] "TCEB1 MUTATION ANALYSIS"
[1] 3
  TCEB1 MUTATED TCEB1 WILD-TYPE 
              3             665 
  TCEB1 MUTATED TCEB1 WILD-TYPE 
              3             665 
[1] "SFMBT1 MUTATION ANALYSIS"
[1] 3
  SFMBT1 MUTATED SFMBT1 WILD-TYPE 
               3              665 
  SFMBT1 MUTATED SFMBT1 WILD-TYPE 
               3              665 
[1] "SLC16A1 MUTATION ANALYSIS"
[1] 3
  SLC16A1 MUTATED SLC16A1 WILD-TYPE 
                3               665 
  SLC16A1 MUTATED SLC16A1 WILD-TYPE 
                3               665 
[1] "PAM MUTATION ANALYSIS"
[1] 3
  PAM MUTATED PAM WILD-TYPE 
            4           664 
  PAM MUTATED PAM WILD-TYPE 
            4           664 
[1] "TMCO3 MUTATION ANALYSIS"
[1] 3
  TMCO3 MUTATED TMCO3 WILD-TYPE 
              7             661 
  TMCO3 MUTATED TMCO3 WILD-TYPE 
              7             661 
[1] "CCDC82 MUTATION ANALYSIS"
[1] 3
  CCDC82 MUTATED CCDC82 WILD-TYPE 
               6              662 
  CCDC82 MUTATED CCDC82 WILD-TYPE 
               6              662 
[1] "NFAT5 MUTATION ANALYSIS"
[1] 3
  NFAT5 MUTATED NFAT5 WILD-TYPE 
              8             660 
  NFAT5 MUTATED NFAT5 WILD-TYPE 
              8             660 
[1] "HNF1B MUTATION ANALYSIS"
[1] 3
  HNF1B MUTATED HNF1B WILD-TYPE 
              3             665 
  HNF1B MUTATED HNF1B WILD-TYPE 
              3             665 
[1] "OR2L8 MUTATION ANALYSIS"
[1] 3
  OR2L8 MUTATED OR2L8 WILD-TYPE 
              7             661 
  OR2L8 MUTATED OR2L8 WILD-TYPE 
              7             661 
[1] "IDUA MUTATION ANALYSIS"
[1] 3
  IDUA MUTATED IDUA WILD-TYPE 
             5            663 
  IDUA MUTATED IDUA WILD-TYPE 
             5            663 
[1] "ZC3H18 MUTATION ANALYSIS"
[1] 3
  ZC3H18 MUTATED ZC3H18 WILD-TYPE 
               6              662 
  ZC3H18 MUTATED ZC3H18 WILD-TYPE 
               6              662 
[1] "GAPDHS MUTATION ANALYSIS"
[1] 3
  GAPDHS MUTATED GAPDHS WILD-TYPE 
               5              663 
  GAPDHS MUTATED GAPDHS WILD-TYPE 
               5              663 
[1] "GPR137 MUTATION ANALYSIS"
[1] 3
  GPR137 MUTATED GPR137 WILD-TYPE 
               4              664 
  GPR137 MUTATED GPR137 WILD-TYPE 
               4              664 
[1] "GFM1 MUTATION ANALYSIS"
[1] 3
  GFM1 MUTATED GFM1 WILD-TYPE 
             3            665 
  GFM1 MUTATED GFM1 WILD-TYPE 
             3            665 
[1] "FAT1 MUTATION ANALYSIS"
[1] 3
  FAT1 MUTATED FAT1 WILD-TYPE 
            22            646 
  FAT1 MUTATED FAT1 WILD-TYPE 
            22            646 
[1] "RRP12 MUTATION ANALYSIS"
[1] 3
  RRP12 MUTATED RRP12 WILD-TYPE 
              9             659 
  RRP12 MUTATED RRP12 WILD-TYPE 
              9             659 
[1] "data2feature, selection=ALL"
 [1] "MRNA_CNMF"                   "MRNA_CHIERARCHICAL"         
 [3] "CN_CNMF"                     "METHLYATION_CNMF"           
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 10 rows and 668 columns.

Variable 1:'MRNA_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'MRNA_CHIERARCHICAL':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'CN_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'METHLYATION_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MRNASEQ_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_MATURE_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "## **** detect survival parameters (defined in index such as ind_OS, ind_MFS, ind_RFS, ind_RFS, ind_BCR and ind_d2ssd) *** ##"
[1] "detected survival parameters using [ind_OS, overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_OS, curated_overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_TCGAOS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survivial parameters using [ind_MFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_RFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_BCR]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_Progression]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [index_additional_survival_time]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using condition: [is.null(surv.mat)&&(selection=='SURV')]"
[1] "survival parameters accumulated so far"
NULL
[1] "************ conversion from categorical data to rank data ********** "
[1] "****** SUMMARY ***** "
Output Data has 668 columns, 0 survival variables, and 10 non-survival variables.
[1] "* survival variables: "
NULL
[1] "* non-survival variables: "
 [1] "MRNA_CNMF"                   "MRNA_CHIERARCHICAL"         
 [3] "CN_CNMF"                     "METHLYATION_CNMF"           
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
MRNA_CNMF, nv=4, binary=FALSE, numeric=FALSE
MRNA_CHIERARCHICAL, nv=5, binary=FALSE, numeric=FALSE
CN_CNMF, nv=3, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=4, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=6, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=5, binary=FALSE, numeric=FALSE

Clustering(1) Variable = TP53 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TP53 MUTATED        0      0      2      0
  TP53 WILD-TYPE     21     17      7     14
D1V1, multiclass
[1] "Remove cluster labels:" "TP53 MUTATED"          
clus
  TP53 MUTATED TP53 WILD-TYPE 
             2             59 
    TCGA-A3-3311     TCGA-A3-3316     TCGA-A3-3317     TCGA-A3-3322 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-A3-3323     TCGA-A3-3326     TCGA-A3-3331     TCGA-A3-3347 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-A3-3349     TCGA-A3-3362     TCGA-A3-3363     TCGA-A3-3365 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-A3-3374     TCGA-A3-3380     TCGA-A3-3383     TCGA-AK-3427 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-AK-3443     TCGA-AK-3453     TCGA-AK-3455     TCGA-AK-3456 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-AK-3465     TCGA-AL-3466     TCGA-AL-3467     TCGA-AL-3472 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-AL-3473     TCGA-AS-3777     TCGA-AS-3778     TCGA-B2-3923 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-B2-3924     TCGA-B2-4098     TCGA-B2-4099     TCGA-B3-3925 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-B3-3926     TCGA-B3-4103     TCGA-B8-4143     TCGA-B8-4148 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-B8-4151     TCGA-B8-4154     TCGA-B8-4619     TCGA-B8-4620 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-B9-4113     TCGA-B9-4114     TCGA-B9-4115     TCGA-B9-4116 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-B9-4117     TCGA-BP-4161     TCGA-BP-4162     TCGA-BP-4163 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-BP-4164     TCGA-BP-4167     TCGA-CJ-4634     TCGA-CJ-4636 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-CJ-4637     TCGA-CJ-4638     TCGA-CJ-4639     TCGA-CJ-4640 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-CJ-4641     TCGA-CJ-4643     TCGA-CJ-4644 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TP53 MUTATED        0      0      0      0      2
  TP53 WILD-TYPE     11     17     14     10      7
D1V2, multiclass
[1] "Remove cluster labels:" "TP53 MUTATED"          
clus
  TP53 MUTATED TP53 WILD-TYPE 
             2             59 
    TCGA-A3-3311     TCGA-A3-3316     TCGA-A3-3317     TCGA-A3-3322 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-A3-3323     TCGA-A3-3326     TCGA-A3-3331     TCGA-A3-3347 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-A3-3349     TCGA-A3-3362     TCGA-A3-3363     TCGA-A3-3365 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-A3-3374     TCGA-A3-3380     TCGA-A3-3383     TCGA-AK-3427 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-AK-3443     TCGA-AK-3453     TCGA-AK-3455     TCGA-AK-3456 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-AK-3465     TCGA-AL-3466     TCGA-AL-3467     TCGA-AL-3472 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-AL-3473     TCGA-AS-3777     TCGA-AS-3778     TCGA-B2-3923 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-B2-3924     TCGA-B2-4098     TCGA-B2-4099     TCGA-B3-3925 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-B3-3926     TCGA-B3-4103     TCGA-B8-4143     TCGA-B8-4148 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-B8-4151     TCGA-B8-4154     TCGA-B8-4619     TCGA-B8-4620 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-B9-4113     TCGA-B9-4114     TCGA-B9-4115     TCGA-B9-4116 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-B9-4117     TCGA-BP-4161     TCGA-BP-4162     TCGA-BP-4163 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-BP-4164     TCGA-BP-4167     TCGA-CJ-4634     TCGA-CJ-4636 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-CJ-4637     TCGA-CJ-4638     TCGA-CJ-4639     TCGA-CJ-4640 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-CJ-4641     TCGA-CJ-4643     TCGA-CJ-4644 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TP53 MUTATED       22      3     13
  TP53 WILD-TYPE    158    239    230
D1V3, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           22            158
  CLUS_2            3            239
  CLUS_3           13            230
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TP53 MUTATED       26      5      3
  TP53 WILD-TYPE     77    250    116
D1V4, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           26             77
  CLUS_2            5            250
  CLUS_3            3            116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TP53 MUTATED       24      8      2      4
  TP53 WILD-TYPE     74    166    243    145
D1V5, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           24             74
  CLUS_2            8            166
  CLUS_3            2            243
  CLUS_4            4            145
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TP53 MUTATED       23      6      2      5      1      1
  TP53 WILD-TYPE     57     84    175    133     89     90
D1V6, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           23             57
  CLUS_2            6             84
  CLUS_3            2            175
  CLUS_4            5            133
  CLUS_5            1             89
  CLUS_6            1             90
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TP53 MUTATED       27      5      6
  TP53 WILD-TYPE    187    143    290
D1V7, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           27            187
  CLUS_2            5            143
  CLUS_3            6            290
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TP53 MUTATED       23     12      3
  TP53 WILD-TYPE     49    464    107
D1V8, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           23             49
  CLUS_2           12            464
  CLUS_3            3            107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TP53 MUTATED        2     18      3      3
  TP53 WILD-TYPE     74     42     39     96
D1V9, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1            2             74
  CLUS_2           18             42
  CLUS_3            3             39
  CLUS_4            3             96
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TP53 MUTATED        0      0      5      3     18
  TP53 WILD-TYPE     26     43     57     97     28
D1V10, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            0             43
  CLUS_3            5             57
  CLUS_4            3             97
  CLUS_5           18             28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = PBRM1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PBRM1 MUTATED        9      3      1      0
  PBRM1 WILD-TYPE     12     14      8     14
D2V1, multiclass
        clus
vv       PBRM1 MUTATED PBRM1 WILD-TYPE
  CLUS_1             9              12
  CLUS_2             3              14
  CLUS_3             1               8
  CLUS_4             0              14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PBRM1 MUTATED        5      3      0      4      1
  PBRM1 WILD-TYPE      6     14     14      6      8
D2V2, multiclass
        clus
vv       PBRM1 MUTATED PBRM1 WILD-TYPE
  CLUS_1             5               6
  CLUS_2             3              14
  CLUS_3             0              14
  CLUS_4             4               6
  CLUS_5             1               8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PBRM1 MUTATED        5     71     70
  PBRM1 WILD-TYPE    175    171    173
D2V3, multiclass
        clus
vv       PBRM1 MUTATED PBRM1 WILD-TYPE
  CLUS_1             5             175
  CLUS_2            71             171
  CLUS_3            70             173
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PBRM1 MUTATED        1     96      5
  PBRM1 WILD-TYPE    102    159    114
D2V4, multiclass
        clus
vv       PBRM1 MUTATED PBRM1 WILD-TYPE
  CLUS_1             1             102
  CLUS_2            96             159
  CLUS_3             5             114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PBRM1 MUTATED        2     42     94      7
  PBRM1 WILD-TYPE     96    132    151    142
D2V5, multiclass
        clus
vv       PBRM1 MUTATED PBRM1 WILD-TYPE
  CLUS_1             2              96
  CLUS_2            42             132
  CLUS_3            94             151
  CLUS_4             7             142
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PBRM1 MUTATED        2      6     73     31     32      1
  PBRM1 WILD-TYPE     78     84    104    107     58     90
D2V6, multiclass
        clus
vv       PBRM1 MUTATED PBRM1 WILD-TYPE
  CLUS_1             2              78
  CLUS_2             6              84
  CLUS_3            73             104
  CLUS_4            31             107
  CLUS_5            32              58
  CLUS_6             1              90
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PBRM1 MUTATED        7     24    111
  PBRM1 WILD-TYPE    207    124    185
D2V7, multiclass
        clus
vv       PBRM1 MUTATED PBRM1 WILD-TYPE
  CLUS_1             7             207
  CLUS_2            24             124
  CLUS_3           111             185
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PBRM1 MUTATED        1    139      2
  PBRM1 WILD-TYPE     71    337    108
D2V8, multiclass
        clus
vv       PBRM1 MUTATED PBRM1 WILD-TYPE
  CLUS_1             1              71
  CLUS_2           139             337
  CLUS_3             2             108
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PBRM1 MUTATED        4      1      2     31
  PBRM1 WILD-TYPE     72     59     40     68
D2V9, multiclass
        clus
vv       PBRM1 MUTATED PBRM1 WILD-TYPE
  CLUS_1             4              72
  CLUS_2             1              59
  CLUS_3             2              40
  CLUS_4            31              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PBRM1 MUTATED        0      1      5     31      1
  PBRM1 WILD-TYPE     26     42     57     69     45
D2V10, multiclass
        clus
vv       PBRM1 MUTATED PBRM1 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             1              42
  CLUS_3             5              57
  CLUS_4            31              69
  CLUS_5             1              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = PTEN MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTEN MUTATED        0      2      1      1
  PTEN WILD-TYPE     21     15      8     13
D3V1, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            0             21
  CLUS_2            2             15
  CLUS_3            1              8
  CLUS_4            1             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTEN MUTATED        0      2      1      0      1
  PTEN WILD-TYPE     11     15     13     10      8
D3V2, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            0             11
  CLUS_2            2             15
  CLUS_3            1             13
  CLUS_4            0             10
  CLUS_5            1              8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PTEN MUTATED       12      5     10
  PTEN WILD-TYPE    168    237    233
D3V3, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1           12            168
  CLUS_2            5            237
  CLUS_3           10            233
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PTEN MUTATED        6      8      5
  PTEN WILD-TYPE     97    247    114
D3V4, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            6             97
  CLUS_2            8            247
  CLUS_3            5            114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTEN MUTATED        7     12      3      6
  PTEN WILD-TYPE     91    162    242    143
D3V5, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            7             91
  CLUS_2           12            162
  CLUS_3            3            242
  CLUS_4            6            143
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PTEN MUTATED        7      0      4     10      1      6
  PTEN WILD-TYPE     73     90    173    128     89     85
D3V6, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            7             73
  CLUS_2            0             90
  CLUS_3            4            173
  CLUS_4           10            128
  CLUS_5            1             89
  CLUS_6            6             85
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PTEN MUTATED       12      6     10
  PTEN WILD-TYPE    202    142    286
D3V7, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1           12            202
  CLUS_2            6            142
  CLUS_3           10            286
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PTEN MUTATED        7     15      6
  PTEN WILD-TYPE     65    461    104
D3V8, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            7             65
  CLUS_2           15            461
  CLUS_3            6            104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTEN MUTATED        6      5      0      2
  PTEN WILD-TYPE     70     55     42     97
D3V9, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            6             70
  CLUS_2            5             55
  CLUS_3            0             42
  CLUS_4            2             97
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTEN MUTATED        2      4      0      2      5
  PTEN WILD-TYPE     24     39     62     98     41
D3V10, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            2             24
  CLUS_2            4             39
  CLUS_3            0             62
  CLUS_4            2             98
  CLUS_5            5             41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = BAP1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BAP1 MUTATED        1      8      0      0
  BAP1 WILD-TYPE     20      9      9     14
D4V1, multiclass
        clus
vv       BAP1 MUTATED BAP1 WILD-TYPE
  CLUS_1            1             20
  CLUS_2            8              9
  CLUS_3            0              9
  CLUS_4            0             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BAP1 MUTATED        0      8      0      1      0
  BAP1 WILD-TYPE     11      9     14      9      9
D4V2, multiclass
        clus
vv       BAP1 MUTATED BAP1 WILD-TYPE
  CLUS_1            0             11
  CLUS_2            8              9
  CLUS_3            0             14
  CLUS_4            1              9
  CLUS_5            0              9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BAP1 MUTATED        2     20     27
  BAP1 WILD-TYPE    178    222    216
D4V3, multiclass
        clus
vv       BAP1 MUTATED BAP1 WILD-TYPE
  CLUS_1            2            178
  CLUS_2           20            222
  CLUS_3           27            216
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BAP1 MUTATED        0     27      3
  BAP1 WILD-TYPE    103    228    116
D4V4, multiclass
        clus
vv       BAP1 MUTATED BAP1 WILD-TYPE
  CLUS_1            0            103
  CLUS_2           27            228
  CLUS_3            3            116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BAP1 MUTATED        0     30     14      5
  BAP1 WILD-TYPE     98    144    231    144
D4V5, multiclass
        clus
vv       BAP1 MUTATED BAP1 WILD-TYPE
  CLUS_1            0             98
  CLUS_2           30            144
  CLUS_3           14            231
  CLUS_4            5            144
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  BAP1 MUTATED        0      4      6     36      3      0
  BAP1 WILD-TYPE     80     86    171    102     87     91
D4V6, multiclass
        clus
vv       BAP1 MUTATED BAP1 WILD-TYPE
  CLUS_1            0             80
  CLUS_2            4             86
  CLUS_3            6            171
  CLUS_4           36            102
  CLUS_5            3             87
  CLUS_6            0             91
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BAP1 MUTATED        5     21     23
  BAP1 WILD-TYPE    209    127    273
D4V7, multiclass
        clus
vv       BAP1 MUTATED BAP1 WILD-TYPE
  CLUS_1            5            209
  CLUS_2           21            127
  CLUS_3           23            273
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BAP1 MUTATED        0     47      2
  BAP1 WILD-TYPE     72    429    108
D4V8, multiclass
        clus
vv       BAP1 MUTATED BAP1 WILD-TYPE
  CLUS_1            0             72
  CLUS_2           47            429
  CLUS_3            2            108
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BAP1 MUTATED        0      0      2      9
  BAP1 WILD-TYPE     76     60     40     90
D4V9, multiclass
        clus
vv       BAP1 MUTATED BAP1 WILD-TYPE
  CLUS_1            0             76
  CLUS_2            0             60
  CLUS_3            2             40
  CLUS_4            9             90
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BAP1 MUTATED        0      0      1     10      0
  BAP1 WILD-TYPE     26     43     61     90     46
D4V10, multiclass
        clus
vv       BAP1 MUTATED BAP1 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            0             43
  CLUS_3            1             61
  CLUS_4           10             90
  CLUS_5            0             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = SETD2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SETD2 MUTATED        2      2      0      0
  SETD2 WILD-TYPE     19     15      9     14
D5V1, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1             2              19
  CLUS_2             2              15
  CLUS_3             0               9
  CLUS_4             0              14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SETD2 MUTATED        1      2      0      1      0
  SETD2 WILD-TYPE     10     15     14      9      9
D5V2, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1             1              10
  CLUS_2             2              15
  CLUS_3             0              14
  CLUS_4             1               9
  CLUS_5             0               9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SETD2 MUTATED        7     24     27
  SETD2 WILD-TYPE    173    218    216
D5V3, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1             7             173
  CLUS_2            24             218
  CLUS_3            27             216
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SETD2 MUTATED        3     31      8
  SETD2 WILD-TYPE    100    224    111
D5V4, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1             3             100
  CLUS_2            31             224
  CLUS_3             8             111
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SETD2 MUTATED        3     18     25     12
  SETD2 WILD-TYPE     95    156    220    137
D5V5, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1             3              95
  CLUS_2            18             156
  CLUS_3            25             220
  CLUS_4            12             137
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SETD2 MUTATED        2     13     24     14      5      0
  SETD2 WILD-TYPE     78     77    153    124     85     91
D5V6, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1             2              78
  CLUS_2            13              77
  CLUS_3            24             153
  CLUS_4            14             124
  CLUS_5             5              85
  CLUS_6             0              91
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SETD2 MUTATED       12     13     31
  SETD2 WILD-TYPE    202    135    265
D5V7, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1            12             202
  CLUS_2            13             135
  CLUS_3            31             265
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SETD2 MUTATED        2     52      2
  SETD2 WILD-TYPE     70    424    108
D5V8, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1             2              70
  CLUS_2            52             424
  CLUS_3             2             108
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SETD2 MUTATED        5      1      3     14
  SETD2 WILD-TYPE     71     59     39     85
D5V9, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1             5              71
  CLUS_2             1              59
  CLUS_3             3              39
  CLUS_4            14              85
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SETD2 MUTATED        0      2      7     13      1
  SETD2 WILD-TYPE     26     41     55     87     45
D5V10, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             2              41
  CLUS_3             7              55
  CLUS_4            13              87
  CLUS_5             1              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = KDM5C MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KDM5C MUTATED        1      0      0      0
  KDM5C WILD-TYPE     20     17      9     14
D6V1, multiclass
[1] "Remove cluster labels:" "KDM5C MUTATED"         
clus
  KDM5C MUTATED KDM5C WILD-TYPE 
              1              60 
     TCGA-A3-3311      TCGA-A3-3316      TCGA-A3-3317      TCGA-A3-3322 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-A3-3323      TCGA-A3-3326      TCGA-A3-3347      TCGA-A3-3349 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-A3-3362      TCGA-A3-3363      TCGA-A3-3365      TCGA-A3-3374 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-A3-3380      TCGA-A3-3383      TCGA-AK-3427      TCGA-AK-3440 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-AK-3443      TCGA-AK-3453      TCGA-AK-3455      TCGA-AK-3456 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-AK-3465      TCGA-AL-3466      TCGA-AL-3467      TCGA-AL-3472 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-AL-3473      TCGA-AS-3777      TCGA-AS-3778      TCGA-B2-3923 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-B2-3924      TCGA-B2-4098      TCGA-B2-4099      TCGA-B3-3925 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-B3-3926      TCGA-B3-4103      TCGA-B3-4104      TCGA-B8-4143 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-B8-4148      TCGA-B8-4151      TCGA-B8-4154      TCGA-B8-4619 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-B8-4620      TCGA-B9-4113      TCGA-B9-4114      TCGA-B9-4115 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-B9-4116      TCGA-B9-4117      TCGA-BP-4161      TCGA-BP-4162 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-BP-4163      TCGA-BP-4164      TCGA-BP-4167      TCGA-CJ-4634 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-CJ-4636      TCGA-CJ-4637      TCGA-CJ-4638      TCGA-CJ-4639 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-CJ-4640      TCGA-CJ-4641      TCGA-CJ-4643      TCGA-CJ-4644 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KDM5C MUTATED        0      0      0      1      0
  KDM5C WILD-TYPE     11     17     14      9      9
D6V2, multiclass
[1] "Remove cluster labels:" "KDM5C MUTATED"         
clus
  KDM5C MUTATED KDM5C WILD-TYPE 
              1              60 
     TCGA-A3-3311      TCGA-A3-3316      TCGA-A3-3317      TCGA-A3-3322 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-A3-3323      TCGA-A3-3326      TCGA-A3-3347      TCGA-A3-3349 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-A3-3362      TCGA-A3-3363      TCGA-A3-3365      TCGA-A3-3374 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-A3-3380      TCGA-A3-3383      TCGA-AK-3427      TCGA-AK-3440 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-AK-3443      TCGA-AK-3453      TCGA-AK-3455      TCGA-AK-3456 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-AK-3465      TCGA-AL-3466      TCGA-AL-3467      TCGA-AL-3472 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-AL-3473      TCGA-AS-3777      TCGA-AS-3778      TCGA-B2-3923 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-B2-3924      TCGA-B2-4098      TCGA-B2-4099      TCGA-B3-3925 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-B3-3926      TCGA-B3-4103      TCGA-B3-4104      TCGA-B8-4143 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-B8-4148      TCGA-B8-4151      TCGA-B8-4154      TCGA-B8-4619 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-B8-4620      TCGA-B9-4113      TCGA-B9-4114      TCGA-B9-4115 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-B9-4116      TCGA-B9-4117      TCGA-BP-4161      TCGA-BP-4162 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-BP-4163      TCGA-BP-4164      TCGA-BP-4167      TCGA-CJ-4634 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-CJ-4636      TCGA-CJ-4637      TCGA-CJ-4638      TCGA-CJ-4639 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-CJ-4640      TCGA-CJ-4641      TCGA-CJ-4643      TCGA-CJ-4644 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KDM5C MUTATED        4      8     18
  KDM5C WILD-TYPE    176    234    225
D6V3, multiclass
        clus
vv       KDM5C MUTATED KDM5C WILD-TYPE
  CLUS_1             4             176
  CLUS_2             8             234
  CLUS_3            18             225
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KDM5C MUTATED        1     17      2
  KDM5C WILD-TYPE    102    238    117
D6V4, multiclass
        clus
vv       KDM5C MUTATED KDM5C WILD-TYPE
  CLUS_1             1             102
  CLUS_2            17             238
  CLUS_3             2             117
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KDM5C MUTATED        1     12     14      2
  KDM5C WILD-TYPE     97    162    231    147
D6V5, multiclass
        clus
vv       KDM5C MUTATED KDM5C WILD-TYPE
  CLUS_1             1              97
  CLUS_2            12             162
  CLUS_3            14             231
  CLUS_4             2             147
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KDM5C MUTATED        1      0     16      7      3      2
  KDM5C WILD-TYPE     79     90    161    131     87     89
D6V6, multiclass
        clus
vv       KDM5C MUTATED KDM5C WILD-TYPE
  CLUS_1             1              79
  CLUS_2             0              90
  CLUS_3            16             161
  CLUS_4             7             131
  CLUS_5             3              87
  CLUS_6             2              89
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KDM5C MUTATED        3      3     24
  KDM5C WILD-TYPE    211    145    272
D6V7, multiclass
        clus
vv       KDM5C MUTATED KDM5C WILD-TYPE
  CLUS_1             3             211
  CLUS_2             3             145
  CLUS_3            24             272
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KDM5C MUTATED        1     27      2
  KDM5C WILD-TYPE     71    449    108
D6V8, multiclass
        clus
vv       KDM5C MUTATED KDM5C WILD-TYPE
  CLUS_1             1              71
  CLUS_2            27             449
  CLUS_3             2             108
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KDM5C MUTATED        1      1      0      3
  KDM5C WILD-TYPE     75     59     42     96
D6V9, multiclass
        clus
vv       KDM5C MUTATED KDM5C WILD-TYPE
  CLUS_1             1              75
  CLUS_2             1              59
  CLUS_3             0              42
  CLUS_4             3              96
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KDM5C MUTATED        0      1      0      3      1
  KDM5C WILD-TYPE     26     42     62     97     45
D6V10, multiclass
        clus
vv       KDM5C MUTATED KDM5C WILD-TYPE
  CLUS_1             0              26
  CLUS_2             1              42
  CLUS_3             0              62
  CLUS_4             3              97
  CLUS_5             1              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = NEFH MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NEFH MUTATED        0      0      0      1
  NEFH WILD-TYPE     21     17      9     13
D7V1, multiclass
[1] "Remove cluster labels:" "NEFH MUTATED"          
clus
  NEFH MUTATED NEFH WILD-TYPE 
             1             60 
    TCGA-A3-3311     TCGA-A3-3316     TCGA-A3-3317     TCGA-A3-3322 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-A3-3323     TCGA-A3-3326     TCGA-A3-3331     TCGA-A3-3347 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-A3-3349     TCGA-A3-3362     TCGA-A3-3363     TCGA-A3-3365 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-A3-3374     TCGA-A3-3380     TCGA-A3-3383     TCGA-AK-3427 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-AK-3440     TCGA-AK-3443     TCGA-AK-3453     TCGA-AK-3455 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-AK-3456     TCGA-AK-3465     TCGA-AL-3466     TCGA-AL-3467 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-AL-3472     TCGA-AL-3473     TCGA-AS-3777     TCGA-AS-3778 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-B2-3923     TCGA-B2-3924     TCGA-B2-4098     TCGA-B2-4099 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-B3-3925     TCGA-B3-3926     TCGA-B3-4103     TCGA-B3-4104 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-B8-4143     TCGA-B8-4148     TCGA-B8-4151     TCGA-B8-4154 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-B8-4619     TCGA-B8-4620     TCGA-B9-4113     TCGA-B9-4114 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-B9-4115     TCGA-B9-4116     TCGA-BP-4161     TCGA-BP-4162 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-BP-4163     TCGA-BP-4164     TCGA-BP-4167     TCGA-CJ-4634 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-CJ-4636     TCGA-CJ-4637     TCGA-CJ-4638     TCGA-CJ-4639 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-CJ-4640     TCGA-CJ-4641     TCGA-CJ-4643     TCGA-CJ-4644 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NEFH MUTATED        0      0      1      0      0
  NEFH WILD-TYPE     11     17     13     10      9
D7V2, multiclass
[1] "Remove cluster labels:" "NEFH MUTATED"          
clus
  NEFH MUTATED NEFH WILD-TYPE 
             1             60 
    TCGA-A3-3311     TCGA-A3-3316     TCGA-A3-3317     TCGA-A3-3322 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-A3-3323     TCGA-A3-3326     TCGA-A3-3331     TCGA-A3-3347 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-A3-3349     TCGA-A3-3362     TCGA-A3-3363     TCGA-A3-3365 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-A3-3374     TCGA-A3-3380     TCGA-A3-3383     TCGA-AK-3427 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-AK-3440     TCGA-AK-3443     TCGA-AK-3453     TCGA-AK-3455 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-AK-3456     TCGA-AK-3465     TCGA-AL-3466     TCGA-AL-3467 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-AL-3472     TCGA-AL-3473     TCGA-AS-3777     TCGA-AS-3778 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-B2-3923     TCGA-B2-3924     TCGA-B2-4098     TCGA-B2-4099 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-B3-3925     TCGA-B3-3926     TCGA-B3-4103     TCGA-B3-4104 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-B8-4143     TCGA-B8-4148     TCGA-B8-4151     TCGA-B8-4154 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-B8-4619     TCGA-B8-4620     TCGA-B9-4113     TCGA-B9-4114 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-B9-4115     TCGA-B9-4116     TCGA-BP-4161     TCGA-BP-4162 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-BP-4163     TCGA-BP-4164     TCGA-BP-4167     TCGA-CJ-4634 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-CJ-4636     TCGA-CJ-4637     TCGA-CJ-4638     TCGA-CJ-4639 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-CJ-4640     TCGA-CJ-4641     TCGA-CJ-4643     TCGA-CJ-4644 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NEFH MUTATED        8      4      3
  NEFH WILD-TYPE    172    238    240
D7V3, multiclass
        clus
vv       NEFH MUTATED NEFH WILD-TYPE
  CLUS_1            8            172
  CLUS_2            4            238
  CLUS_3            3            240
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NEFH MUTATED        1      4      8
  NEFH WILD-TYPE    102    251    111
D7V4, multiclass
        clus
vv       NEFH MUTATED NEFH WILD-TYPE
  CLUS_1            1            102
  CLUS_2            4            251
  CLUS_3            8            111
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NEFH MUTATED        1      1      3     10
  NEFH WILD-TYPE     97    173    242    139
D7V5, multiclass
        clus
vv       NEFH MUTATED NEFH WILD-TYPE
  CLUS_1            1             97
  CLUS_2            1            173
  CLUS_3            3            242
  CLUS_4           10            139
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NEFH MUTATED        0      6      2      2      0      5
  NEFH WILD-TYPE     80     84    175    136     90     86
D7V6, multiclass
        clus
vv       NEFH MUTATED NEFH WILD-TYPE
  CLUS_1            0             80
  CLUS_2            6             84
  CLUS_3            2            175
  CLUS_4            2            136
  CLUS_5            0             90
  CLUS_6            5             86
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NEFH MUTATED       10      2      3
  NEFH WILD-TYPE    204    146    293
D7V7, multiclass
        clus
vv       NEFH MUTATED NEFH WILD-TYPE
  CLUS_1           10            204
  CLUS_2            2            146
  CLUS_3            3            293
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NEFH MUTATED        0      5     10
  NEFH WILD-TYPE     72    471    100
D7V8, multiclass
        clus
vv       NEFH MUTATED NEFH WILD-TYPE
  CLUS_1            0             72
  CLUS_2            5            471
  CLUS_3           10            100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NEFH MUTATED        3      0      0      3
  NEFH WILD-TYPE     73     60     42     96
D7V9, multiclass
        clus
vv       NEFH MUTATED NEFH WILD-TYPE
  CLUS_1            3             73
  CLUS_2            0             60
  CLUS_3            0             42
  CLUS_4            3             96
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NEFH MUTATED        0      3      1      2      0
  NEFH WILD-TYPE     26     40     61     98     46
D7V10, multiclass
        clus
vv       NEFH MUTATED NEFH WILD-TYPE
  CLUS_1            0             26
  CLUS_2            3             40
  CLUS_3            1             61
  CLUS_4            2             98
  CLUS_5            0             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = VHL MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VHL MUTATED       13      5      1      0
  VHL WILD-TYPE      8     12      8     14
D8V1, multiclass
        clus
vv       VHL MUTATED VHL WILD-TYPE
  CLUS_1          13             8
  CLUS_2           5            12
  CLUS_3           1             8
  CLUS_4           0            14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  VHL MUTATED        7      5      0      6      1
  VHL WILD-TYPE      4     12     14      4      8
D8V2, multiclass
        clus
vv       VHL MUTATED VHL WILD-TYPE
  CLUS_1           7             4
  CLUS_2           5            12
  CLUS_3           0            14
  CLUS_4           6             4
  CLUS_5           1             8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  VHL MUTATED        4     93     77
  VHL WILD-TYPE    176    149    166
D8V3, multiclass
        clus
vv       VHL MUTATED VHL WILD-TYPE
  CLUS_1           4           176
  CLUS_2          93           149
  CLUS_3          77           166
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  VHL MUTATED        1    114      1
  VHL WILD-TYPE    102    141    118
D8V4, multiclass
        clus
vv       VHL MUTATED VHL WILD-TYPE
  CLUS_1           1           102
  CLUS_2         114           141
  CLUS_3           1           118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VHL MUTATED        4     58    110      2
  VHL WILD-TYPE     94    116    135    147
D8V5, multiclass
        clus
vv       VHL MUTATED VHL WILD-TYPE
  CLUS_1           4            94
  CLUS_2          58           116
  CLUS_3         110           135
  CLUS_4           2           147
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  VHL MUTATED        2      2     78     52     40      0
  VHL WILD-TYPE     78     88     99     86     50     91
D8V6, multiclass
        clus
vv       VHL MUTATED VHL WILD-TYPE
  CLUS_1           2            78
  CLUS_2           2            88
  CLUS_3          78            99
  CLUS_4          52            86
  CLUS_5          40            50
  CLUS_6           0            91
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  VHL MUTATED        4     46    120
  VHL WILD-TYPE    210    102    176
D8V7, multiclass
        clus
vv       VHL MUTATED VHL WILD-TYPE
  CLUS_1           4           210
  CLUS_2          46           102
  CLUS_3         120           176
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  VHL MUTATED        1    169      0
  VHL WILD-TYPE     71    307    110
D8V8, multiclass
        clus
vv       VHL MUTATED VHL WILD-TYPE
  CLUS_1           1            71
  CLUS_2         169           307
  CLUS_3           0           110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VHL MUTATED        0      1      0     47
  VHL WILD-TYPE     76     59     42     52
D8V9, multiclass
        clus
vv       VHL MUTATED VHL WILD-TYPE
  CLUS_1           0            76
  CLUS_2           1            59
  CLUS_3           0            42
  CLUS_4          47            52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  VHL MUTATED        0      0      0     47      1
  VHL WILD-TYPE     26     43     62     53     45
D8V10, multiclass
        clus
vv       VHL MUTATED VHL WILD-TYPE
  CLUS_1           0            26
  CLUS_2           0            43
  CLUS_3           0            62
  CLUS_4          47            53
  CLUS_5           1            45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = NF2 MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NF2 MUTATED        0      1      0      1
  NF2 WILD-TYPE     21     16      9     13
D9V1, multiclass
[1] "Remove cluster labels:" "NF2 MUTATED"           
clus
  NF2 MUTATED NF2 WILD-TYPE 
            2            59 
   TCGA-A3-3311    TCGA-A3-3316    TCGA-A3-3317    TCGA-A3-3322    TCGA-A3-3323 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-A3-3326    TCGA-A3-3331    TCGA-A3-3347    TCGA-A3-3349    TCGA-A3-3362 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-A3-3363    TCGA-A3-3365    TCGA-A3-3374    TCGA-A3-3380    TCGA-A3-3383 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-AK-3427    TCGA-AK-3440    TCGA-AK-3443    TCGA-AK-3453    TCGA-AK-3455 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-AK-3456    TCGA-AK-3465    TCGA-AL-3466    TCGA-AL-3467    TCGA-AL-3472 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-AL-3473    TCGA-AS-3777    TCGA-AS-3778    TCGA-B2-3923    TCGA-B2-3924 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-B2-4098    TCGA-B2-4099    TCGA-B3-3925    TCGA-B3-3926    TCGA-B3-4103 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-B3-4104    TCGA-B8-4143    TCGA-B8-4148    TCGA-B8-4151    TCGA-B8-4154 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-B8-4619    TCGA-B8-4620    TCGA-B9-4113    TCGA-B9-4114    TCGA-B9-4115 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-B9-4116    TCGA-BP-4161    TCGA-BP-4162    TCGA-BP-4163    TCGA-BP-4164 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-BP-4167    TCGA-CJ-4634    TCGA-CJ-4636    TCGA-CJ-4637    TCGA-CJ-4639 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-CJ-4640    TCGA-CJ-4641    TCGA-CJ-4643    TCGA-CJ-4644 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NF2 MUTATED        0      1      1      0      0
  NF2 WILD-TYPE     11     16     13     10      9
D9V2, multiclass
[1] "Remove cluster labels:" "NF2 MUTATED"           
clus
  NF2 MUTATED NF2 WILD-TYPE 
            2            59 
   TCGA-A3-3311    TCGA-A3-3316    TCGA-A3-3317    TCGA-A3-3322    TCGA-A3-3323 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-A3-3326    TCGA-A3-3331    TCGA-A3-3347    TCGA-A3-3349    TCGA-A3-3362 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-A3-3363    TCGA-A3-3365    TCGA-A3-3374    TCGA-A3-3380    TCGA-A3-3383 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-AK-3427    TCGA-AK-3440    TCGA-AK-3443    TCGA-AK-3453    TCGA-AK-3455 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-AK-3456    TCGA-AK-3465    TCGA-AL-3466    TCGA-AL-3467    TCGA-AL-3472 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-AL-3473    TCGA-AS-3777    TCGA-AS-3778    TCGA-B2-3923    TCGA-B2-3924 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-B2-4098    TCGA-B2-4099    TCGA-B3-3925    TCGA-B3-3926    TCGA-B3-4103 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-B3-4104    TCGA-B8-4143    TCGA-B8-4148    TCGA-B8-4151    TCGA-B8-4154 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-B8-4619    TCGA-B8-4620    TCGA-B9-4113    TCGA-B9-4114    TCGA-B9-4115 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-B9-4116    TCGA-BP-4161    TCGA-BP-4162    TCGA-BP-4163    TCGA-BP-4164 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-BP-4167    TCGA-CJ-4634    TCGA-CJ-4636    TCGA-CJ-4637    TCGA-CJ-4639 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-CJ-4640    TCGA-CJ-4641    TCGA-CJ-4643    TCGA-CJ-4644 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NF2 MUTATED        7      2      7
  NF2 WILD-TYPE    173    240    236
D9V3, multiclass
        clus
vv       NF2 MUTATED NF2 WILD-TYPE
  CLUS_1           7           173
  CLUS_2           2           240
  CLUS_3           7           236
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NF2 MUTATED        4      3      5
  NF2 WILD-TYPE     99    252    114
D9V4, multiclass
        clus
vv       NF2 MUTATED NF2 WILD-TYPE
  CLUS_1           4            99
  CLUS_2           3           252
  CLUS_3           5           114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NF2 MUTATED        1      5      1      9
  NF2 WILD-TYPE     97    169    244    140
D9V5, multiclass
        clus
vv       NF2 MUTATED NF2 WILD-TYPE
  CLUS_1           1            97
  CLUS_2           5           169
  CLUS_3           1           244
  CLUS_4           9           140
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NF2 MUTATED        0      8      1      3      0      4
  NF2 WILD-TYPE     80     82    176    135     90     87
D9V6, multiclass
        clus
vv       NF2 MUTATED NF2 WILD-TYPE
  CLUS_1           0            80
  CLUS_2           8            82
  CLUS_3           1           176
  CLUS_4           3           135
  CLUS_5           0            90
  CLUS_6           4            87
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NF2 MUTATED        9      4      3
  NF2 WILD-TYPE    205    144    293
D9V7, multiclass
        clus
vv       NF2 MUTATED NF2 WILD-TYPE
  CLUS_1           9           205
  CLUS_2           4           144
  CLUS_3           3           293
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NF2 MUTATED        0     11      5
  NF2 WILD-TYPE     72    465    105
D9V8, multiclass
        clus
vv       NF2 MUTATED NF2 WILD-TYPE
  CLUS_1           0            72
  CLUS_2          11           465
  CLUS_3           5           105
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NF2 MUTATED        3      0      4      0
  NF2 WILD-TYPE     73     60     38     99
D9V9, multiclass
        clus
vv       NF2 MUTATED NF2 WILD-TYPE
  CLUS_1           3            73
  CLUS_2           0            60
  CLUS_3           4            38
  CLUS_4           0            99
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NF2 MUTATED        0      3      4      0      0
  NF2 WILD-TYPE     26     40     58    100     46
D9V10, multiclass
        clus
vv       NF2 MUTATED NF2 WILD-TYPE
  CLUS_1           0            26
  CLUS_2           3            40
  CLUS_3           4            58
  CLUS_4           0           100
  CLUS_5           0            46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = HNRNPM MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HNRNPM MUTATED        0      0      0      0
  HNRNPM WILD-TYPE     21     17      9     14
D10V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HNRNPM MUTATED        0      0      0      0      0
  HNRNPM WILD-TYPE     11     17     14     10      9
D10V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  HNRNPM MUTATED        7      4      1
  HNRNPM WILD-TYPE    173    238    242
D10V3, multiclass
        clus
vv       HNRNPM MUTATED HNRNPM WILD-TYPE
  CLUS_1              7              173
  CLUS_2              4              238
  CLUS_3              1              242
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  HNRNPM MUTATED        4      1      7
  HNRNPM WILD-TYPE     99    254    112
D10V4, multiclass
        clus
vv       HNRNPM MUTATED HNRNPM WILD-TYPE
  CLUS_1              4               99
  CLUS_2              1              254
  CLUS_3              7              112
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HNRNPM MUTATED        2      2      0      8
  HNRNPM WILD-TYPE     96    172    245    141
D10V5, multiclass
        clus
vv       HNRNPM MUTATED HNRNPM WILD-TYPE
  CLUS_1              2               96
  CLUS_2              2              172
  CLUS_3              0              245
  CLUS_4              8              141
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HNRNPM MUTATED        2      5      0      1      0      4
  HNRNPM WILD-TYPE     78     85    177    137     90     87
D10V6, multiclass
        clus
vv       HNRNPM MUTATED HNRNPM WILD-TYPE
  CLUS_1              2               78
  CLUS_2              5               85
  CLUS_3              0              177
  CLUS_4              1              137
  CLUS_5              0               90
  CLUS_6              4               87
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  HNRNPM MUTATED        8      4      0
  HNRNPM WILD-TYPE    206    144    296
D10V7, multiclass
        clus
vv       HNRNPM MUTATED HNRNPM WILD-TYPE
  CLUS_1              8              206
  CLUS_2              4              144
  CLUS_3              0              296
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  HNRNPM MUTATED        1      5      6
  HNRNPM WILD-TYPE     71    471    104
D10V8, multiclass
        clus
vv       HNRNPM MUTATED HNRNPM WILD-TYPE
  CLUS_1              1               71
  CLUS_2              5              471
  CLUS_3              6              104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HNRNPM MUTATED        5      3      2      0
  HNRNPM WILD-TYPE     71     57     40     99
D10V9, multiclass
        clus
vv       HNRNPM MUTATED HNRNPM WILD-TYPE
  CLUS_1              5               71
  CLUS_2              3               57
  CLUS_3              2               40
  CLUS_4              0               99
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HNRNPM MUTATED        2      3      4      0      1
  HNRNPM WILD-TYPE     24     40     58    100     45
D10V10, multiclass
        clus
vv       HNRNPM MUTATED HNRNPM WILD-TYPE
  CLUS_1              2               24
  CLUS_2              3               40
  CLUS_3              4               58
  CLUS_4              0              100
  CLUS_5              1               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = MET MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MET MUTATED        0      0      0      2
  MET WILD-TYPE     21     17      9     12
D11V1, multiclass
[1] "Remove cluster labels:" "MET MUTATED"           
clus
  MET MUTATED MET WILD-TYPE 
            2            59 
   TCGA-A3-3311    TCGA-A3-3316    TCGA-A3-3317    TCGA-A3-3322    TCGA-A3-3323 
"MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" 
   TCGA-A3-3326    TCGA-A3-3331    TCGA-A3-3347    TCGA-A3-3349    TCGA-A3-3362 
"MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" 
   TCGA-A3-3363    TCGA-A3-3365    TCGA-A3-3374    TCGA-A3-3380    TCGA-A3-3383 
"MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" 
   TCGA-AK-3427    TCGA-AK-3440    TCGA-AK-3443    TCGA-AK-3453    TCGA-AK-3455 
"MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" 
   TCGA-AK-3456    TCGA-AK-3465    TCGA-AL-3466    TCGA-AL-3467    TCGA-AL-3473 
"MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" 
   TCGA-AS-3777    TCGA-AS-3778    TCGA-B2-3923    TCGA-B2-3924    TCGA-B2-4098 
"MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" 
   TCGA-B2-4099    TCGA-B3-3925    TCGA-B3-3926    TCGA-B3-4103    TCGA-B3-4104 
"MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" 
   TCGA-B8-4143    TCGA-B8-4148    TCGA-B8-4151    TCGA-B8-4154    TCGA-B8-4619 
"MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" 
   TCGA-B8-4620    TCGA-B9-4113    TCGA-B9-4114    TCGA-B9-4115    TCGA-B9-4116 
"MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" 
   TCGA-BP-4161    TCGA-BP-4162    TCGA-BP-4163    TCGA-BP-4164    TCGA-BP-4167 
"MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" 
   TCGA-CJ-4634    TCGA-CJ-4636    TCGA-CJ-4637    TCGA-CJ-4638    TCGA-CJ-4639 
"MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" 
   TCGA-CJ-4640    TCGA-CJ-4641    TCGA-CJ-4643    TCGA-CJ-4644 
"MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MET MUTATED        0      0      2      0      0
  MET WILD-TYPE     11     17     12     10      9
D11V2, multiclass
[1] "Remove cluster labels:" "MET MUTATED"           
clus
  MET MUTATED MET WILD-TYPE 
            2            59 
   TCGA-A3-3311    TCGA-A3-3316    TCGA-A3-3317    TCGA-A3-3322    TCGA-A3-3323 
"MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" 
   TCGA-A3-3326    TCGA-A3-3331    TCGA-A3-3347    TCGA-A3-3349    TCGA-A3-3362 
"MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" 
   TCGA-A3-3363    TCGA-A3-3365    TCGA-A3-3374    TCGA-A3-3380    TCGA-A3-3383 
"MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" 
   TCGA-AK-3427    TCGA-AK-3440    TCGA-AK-3443    TCGA-AK-3453    TCGA-AK-3455 
"MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" 
   TCGA-AK-3456    TCGA-AK-3465    TCGA-AL-3466    TCGA-AL-3467    TCGA-AL-3473 
"MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" 
   TCGA-AS-3777    TCGA-AS-3778    TCGA-B2-3923    TCGA-B2-3924    TCGA-B2-4098 
"MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" 
   TCGA-B2-4099    TCGA-B3-3925    TCGA-B3-3926    TCGA-B3-4103    TCGA-B3-4104 
"MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" 
   TCGA-B8-4143    TCGA-B8-4148    TCGA-B8-4151    TCGA-B8-4154    TCGA-B8-4619 
"MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" 
   TCGA-B8-4620    TCGA-B9-4113    TCGA-B9-4114    TCGA-B9-4115    TCGA-B9-4116 
"MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" 
   TCGA-BP-4161    TCGA-BP-4162    TCGA-BP-4163    TCGA-BP-4164    TCGA-BP-4167 
"MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" 
   TCGA-CJ-4634    TCGA-CJ-4636    TCGA-CJ-4637    TCGA-CJ-4638    TCGA-CJ-4639 
"MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" 
   TCGA-CJ-4640    TCGA-CJ-4641    TCGA-CJ-4643    TCGA-CJ-4644 
"MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  MET MUTATED       11      4      3
  MET WILD-TYPE    169    238    240
D11V3, multiclass
        clus
vv       MET MUTATED MET WILD-TYPE
  CLUS_1          11           169
  CLUS_2           4           238
  CLUS_3           3           240
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  MET MUTATED        1      3     13
  MET WILD-TYPE    102    252    106
D11V4, multiclass
        clus
vv       MET MUTATED MET WILD-TYPE
  CLUS_1           1           102
  CLUS_2           3           252
  CLUS_3          13           106
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MET MUTATED        0      1      1     17
  MET WILD-TYPE     98    173    244    132
D11V5, multiclass
        clus
vv       MET MUTATED MET WILD-TYPE
  CLUS_1           0            98
  CLUS_2           1           173
  CLUS_3           1           244
  CLUS_4          17           132
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MET MUTATED        0      4      1      0      0     14
  MET WILD-TYPE     80     86    176    138     90     77
D11V6, multiclass
        clus
vv       MET MUTATED MET WILD-TYPE
  CLUS_1           0            80
  CLUS_2           4            86
  CLUS_3           1           176
  CLUS_4           0           138
  CLUS_5           0            90
  CLUS_6          14            77
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  MET MUTATED       15      3      1
  MET WILD-TYPE    199    145    295
D11V7, multiclass
        clus
vv       MET MUTATED MET WILD-TYPE
  CLUS_1          15           199
  CLUS_2           3           145
  CLUS_3           1           295
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  MET MUTATED        0      5     14
  MET WILD-TYPE     72    471     96
D11V8, multiclass
        clus
vv       MET MUTATED MET WILD-TYPE
  CLUS_1           0            72
  CLUS_2           5           471
  CLUS_3          14            96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MET MUTATED        9      0      3      1
  MET WILD-TYPE     67     60     39     98
D11V9, multiclass
        clus
vv       MET MUTATED MET WILD-TYPE
  CLUS_1           9            67
  CLUS_2           0            60
  CLUS_3           3            39
  CLUS_4           1            98
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MET MUTATED        4      5      4      0      0
  MET WILD-TYPE     22     38     58    100     46
D11V10, multiclass
        clus
vv       MET MUTATED MET WILD-TYPE
  CLUS_1           4            22
  CLUS_2           5            38
  CLUS_3           4            58
  CLUS_4           0           100
  CLUS_5           0            46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = MUC5B MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MUC5B MUTATED        0      0      0      1
  MUC5B WILD-TYPE     21     17      9     13
D12V1, multiclass
[1] "Remove cluster labels:" "MUC5B MUTATED"         
clus
  MUC5B MUTATED MUC5B WILD-TYPE 
              1              60 
     TCGA-A3-3311      TCGA-A3-3316      TCGA-A3-3317      TCGA-A3-3322 
"MUC5B WILD-TYPE" "MUC5B WILD-TYPE" "MUC5B WILD-TYPE" "MUC5B WILD-TYPE" 
     TCGA-A3-3323      TCGA-A3-3326      TCGA-A3-3331      TCGA-A3-3347 
"MUC5B WILD-TYPE" "MUC5B WILD-TYPE" "MUC5B WILD-TYPE" "MUC5B WILD-TYPE" 
     TCGA-A3-3349      TCGA-A3-3362      TCGA-A3-3363      TCGA-A3-3365 
"MUC5B WILD-TYPE" "MUC5B WILD-TYPE" "MUC5B WILD-TYPE" "MUC5B WILD-TYPE" 
     TCGA-A3-3374      TCGA-A3-3380      TCGA-A3-3383      TCGA-AK-3427 
"MUC5B WILD-TYPE" "MUC5B WILD-TYPE" "MUC5B WILD-TYPE" "MUC5B WILD-TYPE" 
     TCGA-AK-3440      TCGA-AK-3443      TCGA-AK-3453      TCGA-AK-3455 
"MUC5B WILD-TYPE" "MUC5B WILD-TYPE" "MUC5B WILD-TYPE" "MUC5B WILD-TYPE" 
     TCGA-AK-3456      TCGA-AK-3465      TCGA-AL-3467      TCGA-AL-3472 
"MUC5B WILD-TYPE" "MUC5B WILD-TYPE" "MUC5B WILD-TYPE" "MUC5B WILD-TYPE" 
     TCGA-AL-3473      TCGA-AS-3777      TCGA-AS-3778      TCGA-B2-3923 
"MUC5B WILD-TYPE" "MUC5B WILD-TYPE" "MUC5B WILD-TYPE" "MUC5B WILD-TYPE" 
     TCGA-B2-3924      TCGA-B2-4098      TCGA-B2-4099      TCGA-B3-3925 
"MUC5B WILD-TYPE" "MUC5B WILD-TYPE" "MUC5B WILD-TYPE" "MUC5B WILD-TYPE" 
     TCGA-B3-3926      TCGA-B3-4103      TCGA-B3-4104      TCGA-B8-4143 
"MUC5B WILD-TYPE" "MUC5B WILD-TYPE" "MUC5B WILD-TYPE" "MUC5B WILD-TYPE" 
     TCGA-B8-4148      TCGA-B8-4151      TCGA-B8-4154      TCGA-B8-4619 
"MUC5B WILD-TYPE" "MUC5B WILD-TYPE" "MUC5B WILD-TYPE" "MUC5B WILD-TYPE" 
     TCGA-B8-4620      TCGA-B9-4113      TCGA-B9-4114      TCGA-B9-4115 
"MUC5B WILD-TYPE" "MUC5B WILD-TYPE" "MUC5B WILD-TYPE" "MUC5B WILD-TYPE" 
     TCGA-B9-4116      TCGA-B9-4117      TCGA-BP-4161      TCGA-BP-4162 
"MUC5B WILD-TYPE" "MUC5B WILD-TYPE" "MUC5B WILD-TYPE" "MUC5B WILD-TYPE" 
     TCGA-BP-4163      TCGA-BP-4164      TCGA-BP-4167      TCGA-CJ-4634 
"MUC5B WILD-TYPE" "MUC5B WILD-TYPE" "MUC5B WILD-TYPE" "MUC5B WILD-TYPE" 
     TCGA-CJ-4636      TCGA-CJ-4637      TCGA-CJ-4638      TCGA-CJ-4639 
"MUC5B WILD-TYPE" "MUC5B WILD-TYPE" "MUC5B WILD-TYPE" "MUC5B WILD-TYPE" 
     TCGA-CJ-4640      TCGA-CJ-4641      TCGA-CJ-4643      TCGA-CJ-4644 
"MUC5B WILD-TYPE" "MUC5B WILD-TYPE" "MUC5B WILD-TYPE" "MUC5B WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MUC5B MUTATED        0      0      1      0      0
  MUC5B WILD-TYPE     11     17     13     10      9
D12V2, multiclass
[1] "Remove cluster labels:" "MUC5B MUTATED"         
clus
  MUC5B MUTATED MUC5B WILD-TYPE 
              1              60 
     TCGA-A3-3311      TCGA-A3-3316      TCGA-A3-3317      TCGA-A3-3322 
"MUC5B WILD-TYPE" "MUC5B WILD-TYPE" "MUC5B WILD-TYPE" "MUC5B WILD-TYPE" 
     TCGA-A3-3323      TCGA-A3-3326      TCGA-A3-3331      TCGA-A3-3347 
"MUC5B WILD-TYPE" "MUC5B WILD-TYPE" "MUC5B WILD-TYPE" "MUC5B WILD-TYPE" 
     TCGA-A3-3349      TCGA-A3-3362      TCGA-A3-3363      TCGA-A3-3365 
"MUC5B WILD-TYPE" "MUC5B WILD-TYPE" "MUC5B WILD-TYPE" "MUC5B WILD-TYPE" 
     TCGA-A3-3374      TCGA-A3-3380      TCGA-A3-3383      TCGA-AK-3427 
"MUC5B WILD-TYPE" "MUC5B WILD-TYPE" "MUC5B WILD-TYPE" "MUC5B WILD-TYPE" 
     TCGA-AK-3440      TCGA-AK-3443      TCGA-AK-3453      TCGA-AK-3455 
"MUC5B WILD-TYPE" "MUC5B WILD-TYPE" "MUC5B WILD-TYPE" "MUC5B WILD-TYPE" 
     TCGA-AK-3456      TCGA-AK-3465      TCGA-AL-3467      TCGA-AL-3472 
"MUC5B WILD-TYPE" "MUC5B WILD-TYPE" "MUC5B WILD-TYPE" "MUC5B WILD-TYPE" 
     TCGA-AL-3473      TCGA-AS-3777      TCGA-AS-3778      TCGA-B2-3923 
"MUC5B WILD-TYPE" "MUC5B WILD-TYPE" "MUC5B WILD-TYPE" "MUC5B WILD-TYPE" 
     TCGA-B2-3924      TCGA-B2-4098      TCGA-B2-4099      TCGA-B3-3925 
"MUC5B WILD-TYPE" "MUC5B WILD-TYPE" "MUC5B WILD-TYPE" "MUC5B WILD-TYPE" 
     TCGA-B3-3926      TCGA-B3-4103      TCGA-B3-4104      TCGA-B8-4143 
"MUC5B WILD-TYPE" "MUC5B WILD-TYPE" "MUC5B WILD-TYPE" "MUC5B WILD-TYPE" 
     TCGA-B8-4148      TCGA-B8-4151      TCGA-B8-4154      TCGA-B8-4619 
"MUC5B WILD-TYPE" "MUC5B WILD-TYPE" "MUC5B WILD-TYPE" "MUC5B WILD-TYPE" 
     TCGA-B8-4620      TCGA-B9-4113      TCGA-B9-4114      TCGA-B9-4115 
"MUC5B WILD-TYPE" "MUC5B WILD-TYPE" "MUC5B WILD-TYPE" "MUC5B WILD-TYPE" 
     TCGA-B9-4116      TCGA-B9-4117      TCGA-BP-4161      TCGA-BP-4162 
"MUC5B WILD-TYPE" "MUC5B WILD-TYPE" "MUC5B WILD-TYPE" "MUC5B WILD-TYPE" 
     TCGA-BP-4163      TCGA-BP-4164      TCGA-BP-4167      TCGA-CJ-4634 
"MUC5B WILD-TYPE" "MUC5B WILD-TYPE" "MUC5B WILD-TYPE" "MUC5B WILD-TYPE" 
     TCGA-CJ-4636      TCGA-CJ-4637      TCGA-CJ-4638      TCGA-CJ-4639 
"MUC5B WILD-TYPE" "MUC5B WILD-TYPE" "MUC5B WILD-TYPE" "MUC5B WILD-TYPE" 
     TCGA-CJ-4640      TCGA-CJ-4641      TCGA-CJ-4643      TCGA-CJ-4644 
"MUC5B WILD-TYPE" "MUC5B WILD-TYPE" "MUC5B WILD-TYPE" "MUC5B WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MUC5B MUTATED       16      6      8
  MUC5B WILD-TYPE    164    236    235
D12V3, multiclass
        clus
vv       MUC5B MUTATED MUC5B WILD-TYPE
  CLUS_1            16             164
  CLUS_2             6             236
  CLUS_3             8             235
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MUC5B MUTATED       13      5     11
  MUC5B WILD-TYPE     90    250    108
D12V4, multiclass
        clus
vv       MUC5B MUTATED MUC5B WILD-TYPE
  CLUS_1            13              90
  CLUS_2             5             250
  CLUS_3            11             108
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MUC5B MUTATED       10      3      4     13
  MUC5B WILD-TYPE     88    171    241    136
D12V5, multiclass
        clus
vv       MUC5B MUTATED MUC5B WILD-TYPE
  CLUS_1            10              88
  CLUS_2             3             171
  CLUS_3             4             241
  CLUS_4            13             136
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MUC5B MUTATED       10     10      4      1      0      5
  MUC5B WILD-TYPE     70     80    173    137     90     86
D12V6, multiclass
        clus
vv       MUC5B MUTATED MUC5B WILD-TYPE
  CLUS_1            10              70
  CLUS_2            10              80
  CLUS_3             4             173
  CLUS_4             1             137
  CLUS_5             0              90
  CLUS_6             5              86
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MUC5B MUTATED       23      2      5
  MUC5B WILD-TYPE    191    146    291
D12V7, multiclass
        clus
vv       MUC5B MUTATED MUC5B WILD-TYPE
  CLUS_1            23             191
  CLUS_2             2             146
  CLUS_3             5             291
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MUC5B MUTATED       10     10     10
  MUC5B WILD-TYPE     62    466    100
D12V8, multiclass
        clus
vv       MUC5B MUTATED MUC5B WILD-TYPE
  CLUS_1            10              62
  CLUS_2            10             466
  CLUS_3            10             100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MUC5B MUTATED        8      8      4      2
  MUC5B WILD-TYPE     68     52     38     97
D12V9, multiclass
        clus
vv       MUC5B MUTATED MUC5B WILD-TYPE
  CLUS_1             8              68
  CLUS_2             8              52
  CLUS_3             4              38
  CLUS_4             2              97
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MUC5B MUTATED        3      4      6      1      8
  MUC5B WILD-TYPE     23     39     56     99     38
D12V10, multiclass
        clus
vv       MUC5B MUTATED MUC5B WILD-TYPE
  CLUS_1             3              23
  CLUS_2             4              39
  CLUS_3             6              56
  CLUS_4             1              99
  CLUS_5             8              38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = KDM6A MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KDM6A MUTATED        0      0      0      1
  KDM6A WILD-TYPE     21     17      9     13
D13V1, multiclass
[1] "Remove cluster labels:" "KDM6A MUTATED"         
clus
  KDM6A MUTATED KDM6A WILD-TYPE 
              1              60 
     TCGA-A3-3311      TCGA-A3-3316      TCGA-A3-3317      TCGA-A3-3322 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-A3-3323      TCGA-A3-3326      TCGA-A3-3331      TCGA-A3-3347 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-A3-3349      TCGA-A3-3362      TCGA-A3-3363      TCGA-A3-3365 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-A3-3374      TCGA-A3-3380      TCGA-A3-3383      TCGA-AK-3427 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AK-3440      TCGA-AK-3443      TCGA-AK-3453      TCGA-AK-3455 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AK-3456      TCGA-AK-3465      TCGA-AL-3466      TCGA-AL-3467 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AL-3472      TCGA-AL-3473      TCGA-AS-3777      TCGA-AS-3778 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-B2-3923      TCGA-B2-3924      TCGA-B2-4099      TCGA-B3-3925 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-B3-3926      TCGA-B3-4103      TCGA-B3-4104      TCGA-B8-4143 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-B8-4148      TCGA-B8-4151      TCGA-B8-4154      TCGA-B8-4619 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-B8-4620      TCGA-B9-4113      TCGA-B9-4114      TCGA-B9-4115 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-B9-4116      TCGA-B9-4117      TCGA-BP-4161      TCGA-BP-4162 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-BP-4163      TCGA-BP-4164      TCGA-BP-4167      TCGA-CJ-4634 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-CJ-4636      TCGA-CJ-4637      TCGA-CJ-4638      TCGA-CJ-4639 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-CJ-4640      TCGA-CJ-4641      TCGA-CJ-4643      TCGA-CJ-4644 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KDM6A MUTATED        0      0      1      0      0
  KDM6A WILD-TYPE     11     17     13     10      9
D13V2, multiclass
[1] "Remove cluster labels:" "KDM6A MUTATED"         
clus
  KDM6A MUTATED KDM6A WILD-TYPE 
              1              60 
     TCGA-A3-3311      TCGA-A3-3316      TCGA-A3-3317      TCGA-A3-3322 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-A3-3323      TCGA-A3-3326      TCGA-A3-3331      TCGA-A3-3347 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-A3-3349      TCGA-A3-3362      TCGA-A3-3363      TCGA-A3-3365 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-A3-3374      TCGA-A3-3380      TCGA-A3-3383      TCGA-AK-3427 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AK-3440      TCGA-AK-3443      TCGA-AK-3453      TCGA-AK-3455 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AK-3456      TCGA-AK-3465      TCGA-AL-3466      TCGA-AL-3467 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AL-3472      TCGA-AL-3473      TCGA-AS-3777      TCGA-AS-3778 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-B2-3923      TCGA-B2-3924      TCGA-B2-4099      TCGA-B3-3925 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-B3-3926      TCGA-B3-4103      TCGA-B3-4104      TCGA-B8-4143 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-B8-4148      TCGA-B8-4151      TCGA-B8-4154      TCGA-B8-4619 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-B8-4620      TCGA-B9-4113      TCGA-B9-4114      TCGA-B9-4115 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-B9-4116      TCGA-B9-4117      TCGA-BP-4161      TCGA-BP-4162 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-BP-4163      TCGA-BP-4164      TCGA-BP-4167      TCGA-CJ-4634 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-CJ-4636      TCGA-CJ-4637      TCGA-CJ-4638      TCGA-CJ-4639 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-CJ-4640      TCGA-CJ-4641      TCGA-CJ-4643      TCGA-CJ-4644 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KDM6A MUTATED        6      3      2
  KDM6A WILD-TYPE    174    239    241
D13V3, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1             6             174
  CLUS_2             3             239
  CLUS_3             2             241
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KDM6A MUTATED        1      1      6
  KDM6A WILD-TYPE    102    254    113
D13V4, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1             1             102
  CLUS_2             1             254
  CLUS_3             6             113
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KDM6A MUTATED        1      0      3      7
  KDM6A WILD-TYPE     97    174    242    142
D13V5, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1             1              97
  CLUS_2             0             174
  CLUS_3             3             242
  CLUS_4             7             142
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KDM6A MUTATED        0      4      1      1      1      4
  KDM6A WILD-TYPE     80     86    176    137     89     87
D13V6, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1             0              80
  CLUS_2             4              86
  CLUS_3             1             176
  CLUS_4             1             137
  CLUS_5             1              89
  CLUS_6             4              87
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KDM6A MUTATED        8      1      2
  KDM6A WILD-TYPE    206    147    294
D13V7, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1             8             206
  CLUS_2             1             147
  CLUS_3             2             294
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KDM6A MUTATED        0      4      7
  KDM6A WILD-TYPE     72    472    103
D13V8, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1             0              72
  CLUS_2             4             472
  CLUS_3             7             103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KDM6A MUTATED        2      1      0      0
  KDM6A WILD-TYPE     74     59     42     99
D13V9, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1             2              74
  CLUS_2             1              59
  CLUS_3             0              42
  CLUS_4             0              99
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KDM6A MUTATED        0      2      1      0      0
  KDM6A WILD-TYPE     26     41     61    100     46
D13V10, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1             0              26
  CLUS_2             2              41
  CLUS_3             1              61
  CLUS_4             0             100
  CLUS_5             0              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = TDG MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TDG MUTATED        0      0      0      0
  TDG WILD-TYPE     21     17      9     14
D14V1, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TDG MUTATED        0      0      0      0      0
  TDG WILD-TYPE     11     17     14     10      9
D14V2, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  TDG MUTATED        4      0      1
  TDG WILD-TYPE    176    242    242
D14V3, multiclass
        clus
vv       TDG MUTATED TDG WILD-TYPE
  CLUS_1           4           176
  CLUS_2           0           242
  CLUS_3           1           242
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  TDG MUTATED        0      1      4
  TDG WILD-TYPE    103    254    115
D14V4, multiclass
        clus
vv       TDG MUTATED TDG WILD-TYPE
  CLUS_1           0           103
  CLUS_2           1           254
  CLUS_3           4           115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TDG MUTATED        0      0      1      4
  TDG WILD-TYPE     98    174    244    145
D14V5, multiclass
        clus
vv       TDG MUTATED TDG WILD-TYPE
  CLUS_1           0            98
  CLUS_2           0           174
  CLUS_3           1           244
  CLUS_4           4           145
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TDG MUTATED        0      2      0      1      0      2
  TDG WILD-TYPE     80     88    177    137     90     89
D14V6, multiclass
        clus
vv       TDG MUTATED TDG WILD-TYPE
  CLUS_1           0            80
  CLUS_2           2            88
  CLUS_3           0           177
  CLUS_4           1           137
  CLUS_5           0            90
  CLUS_6           2            89
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  TDG MUTATED        4      0      1
  TDG WILD-TYPE    210    148    295
D14V7, multiclass
        clus
vv       TDG MUTATED TDG WILD-TYPE
  CLUS_1           4           210
  CLUS_2           0           148
  CLUS_3           1           295
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  TDG MUTATED        0      2      3
  TDG WILD-TYPE     72    474    107
D14V8, multiclass
        clus
vv       TDG MUTATED TDG WILD-TYPE
  CLUS_1           0            72
  CLUS_2           2           474
  CLUS_3           3           107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TDG MUTATED        4      0      0      1
  TDG WILD-TYPE     72     60     42     98
D14V9, multiclass
        clus
vv       TDG MUTATED TDG WILD-TYPE
  CLUS_1           4            72
  CLUS_2           0            60
  CLUS_3           0            42
  CLUS_4           1            98
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TDG MUTATED        1      2      1      1      0
  TDG WILD-TYPE     25     41     61     99     46
D14V10, multiclass
        clus
vv       TDG MUTATED TDG WILD-TYPE
  CLUS_1           1            25
  CLUS_2           2            41
  CLUS_3           1            61
  CLUS_4           1            99
  CLUS_5           0            46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = NFE2L2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NFE2L2 MUTATED        0      0      0      1
  NFE2L2 WILD-TYPE     21     17      9     13
D15V1, multiclass
[1] "Remove cluster labels:" "NFE2L2 MUTATED"        
clus
  NFE2L2 MUTATED NFE2L2 WILD-TYPE 
               1               60 
      TCGA-A3-3311       TCGA-A3-3316       TCGA-A3-3317       TCGA-A3-3322 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-A3-3323       TCGA-A3-3326       TCGA-A3-3331       TCGA-A3-3347 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-A3-3349       TCGA-A3-3362       TCGA-A3-3363       TCGA-A3-3365 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-A3-3374       TCGA-A3-3380       TCGA-A3-3383       TCGA-AK-3427 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-AK-3440       TCGA-AK-3443       TCGA-AK-3453       TCGA-AK-3455 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-AK-3456       TCGA-AK-3465       TCGA-AL-3466       TCGA-AL-3467 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-AL-3472       TCGA-AL-3473       TCGA-AS-3777       TCGA-AS-3778 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-B2-3923       TCGA-B2-3924       TCGA-B2-4099       TCGA-B3-3925 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-B3-3926       TCGA-B3-4103       TCGA-B3-4104       TCGA-B8-4143 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-B8-4148       TCGA-B8-4151       TCGA-B8-4154       TCGA-B8-4619 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-B8-4620       TCGA-B9-4113       TCGA-B9-4114       TCGA-B9-4115 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-B9-4116       TCGA-B9-4117       TCGA-BP-4161       TCGA-BP-4162 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-BP-4163       TCGA-BP-4164       TCGA-BP-4167       TCGA-CJ-4634 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-CJ-4636       TCGA-CJ-4637       TCGA-CJ-4638       TCGA-CJ-4639 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-CJ-4640       TCGA-CJ-4641       TCGA-CJ-4643       TCGA-CJ-4644 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NFE2L2 MUTATED        0      0      1      0      0
  NFE2L2 WILD-TYPE     11     17     13     10      9
D15V2, multiclass
[1] "Remove cluster labels:" "NFE2L2 MUTATED"        
clus
  NFE2L2 MUTATED NFE2L2 WILD-TYPE 
               1               60 
      TCGA-A3-3311       TCGA-A3-3316       TCGA-A3-3317       TCGA-A3-3322 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-A3-3323       TCGA-A3-3326       TCGA-A3-3331       TCGA-A3-3347 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-A3-3349       TCGA-A3-3362       TCGA-A3-3363       TCGA-A3-3365 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-A3-3374       TCGA-A3-3380       TCGA-A3-3383       TCGA-AK-3427 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-AK-3440       TCGA-AK-3443       TCGA-AK-3453       TCGA-AK-3455 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-AK-3456       TCGA-AK-3465       TCGA-AL-3466       TCGA-AL-3467 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-AL-3472       TCGA-AL-3473       TCGA-AS-3777       TCGA-AS-3778 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-B2-3923       TCGA-B2-3924       TCGA-B2-4099       TCGA-B3-3925 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-B3-3926       TCGA-B3-4103       TCGA-B3-4104       TCGA-B8-4143 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-B8-4148       TCGA-B8-4151       TCGA-B8-4154       TCGA-B8-4619 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-B8-4620       TCGA-B9-4113       TCGA-B9-4114       TCGA-B9-4115 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-B9-4116       TCGA-B9-4117       TCGA-BP-4161       TCGA-BP-4162 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-BP-4163       TCGA-BP-4164       TCGA-BP-4167       TCGA-CJ-4634 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-CJ-4636       TCGA-CJ-4637       TCGA-CJ-4638       TCGA-CJ-4639 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-CJ-4640       TCGA-CJ-4641       TCGA-CJ-4643       TCGA-CJ-4644 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NFE2L2 MUTATED        4      2      4
  NFE2L2 WILD-TYPE    176    240    239
D15V3, multiclass
        clus
vv       NFE2L2 MUTATED NFE2L2 WILD-TYPE
  CLUS_1              4              176
  CLUS_2              2              240
  CLUS_3              4              239
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NFE2L2 MUTATED        0      3      4
  NFE2L2 WILD-TYPE    103    252    115
D15V4, multiclass
        clus
vv       NFE2L2 MUTATED NFE2L2 WILD-TYPE
  CLUS_1              0              103
  CLUS_2              3              252
  CLUS_3              4              115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NFE2L2 MUTATED        0      4      1      5
  NFE2L2 WILD-TYPE     98    170    244    144
D15V5, multiclass
        clus
vv       NFE2L2 MUTATED NFE2L2 WILD-TYPE
  CLUS_1              0               98
  CLUS_2              4              170
  CLUS_3              1              244
  CLUS_4              5              144
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NFE2L2 MUTATED        0      2      1      4      0      3
  NFE2L2 WILD-TYPE     80     88    176    134     90     88
D15V6, multiclass
        clus
vv       NFE2L2 MUTATED NFE2L2 WILD-TYPE
  CLUS_1              0               80
  CLUS_2              2               88
  CLUS_3              1              176
  CLUS_4              4              134
  CLUS_5              0               90
  CLUS_6              3               88
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NFE2L2 MUTATED        5      2      3
  NFE2L2 WILD-TYPE    209    146    293
D15V7, multiclass
        clus
vv       NFE2L2 MUTATED NFE2L2 WILD-TYPE
  CLUS_1              5              209
  CLUS_2              2              146
  CLUS_3              3              293
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NFE2L2 MUTATED        0      5      5
  NFE2L2 WILD-TYPE     72    471    105
D15V8, multiclass
        clus
vv       NFE2L2 MUTATED NFE2L2 WILD-TYPE
  CLUS_1              0               72
  CLUS_2              5              471
  CLUS_3              5              105
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NFE2L2 MUTATED        3      0      0      1
  NFE2L2 WILD-TYPE     73     60     42     98
D15V9, multiclass
        clus
vv       NFE2L2 MUTATED NFE2L2 WILD-TYPE
  CLUS_1              3               73
  CLUS_2              0               60
  CLUS_3              0               42
  CLUS_4              1               98
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NFE2L2 MUTATED        0      2      1      1      0
  NFE2L2 WILD-TYPE     26     41     61     99     46
D15V10, multiclass
        clus
vv       NFE2L2 MUTATED NFE2L2 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              2               41
  CLUS_3              1               61
  CLUS_4              1               99
  CLUS_5              0               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = ATM MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATM MUTATED        1      0      0      0
  ATM WILD-TYPE     20     17      9     14
D16V1, multiclass
[1] "Remove cluster labels:" "ATM MUTATED"           
clus
  ATM MUTATED ATM WILD-TYPE 
            1            60 
   TCGA-A3-3311    TCGA-A3-3316    TCGA-A3-3317    TCGA-A3-3322    TCGA-A3-3323 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-A3-3326    TCGA-A3-3331    TCGA-A3-3347    TCGA-A3-3349    TCGA-A3-3362 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-A3-3363    TCGA-A3-3365    TCGA-A3-3374    TCGA-A3-3380    TCGA-A3-3383 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AK-3427    TCGA-AK-3440    TCGA-AK-3443    TCGA-AK-3453    TCGA-AK-3455 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AK-3456    TCGA-AK-3465    TCGA-AL-3466    TCGA-AL-3467    TCGA-AL-3472 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AL-3473    TCGA-AS-3777    TCGA-AS-3778    TCGA-B2-3923    TCGA-B2-3924 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-B2-4098    TCGA-B2-4099    TCGA-B3-3925    TCGA-B3-3926    TCGA-B3-4103 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-B3-4104    TCGA-B8-4143    TCGA-B8-4148    TCGA-B8-4151    TCGA-B8-4154 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-B8-4619    TCGA-B8-4620    TCGA-B9-4113    TCGA-B9-4114    TCGA-B9-4115 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-B9-4116    TCGA-B9-4117    TCGA-BP-4161    TCGA-BP-4162    TCGA-BP-4163 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-BP-4164    TCGA-BP-4167    TCGA-CJ-4634    TCGA-CJ-4636    TCGA-CJ-4637 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-CJ-4638    TCGA-CJ-4640    TCGA-CJ-4641    TCGA-CJ-4643    TCGA-CJ-4644 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATM MUTATED        0      0      0      1      0
  ATM WILD-TYPE     11     17     14      9      9
D16V2, multiclass
[1] "Remove cluster labels:" "ATM MUTATED"           
clus
  ATM MUTATED ATM WILD-TYPE 
            1            60 
   TCGA-A3-3311    TCGA-A3-3316    TCGA-A3-3317    TCGA-A3-3322    TCGA-A3-3323 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-A3-3326    TCGA-A3-3331    TCGA-A3-3347    TCGA-A3-3349    TCGA-A3-3362 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-A3-3363    TCGA-A3-3365    TCGA-A3-3374    TCGA-A3-3380    TCGA-A3-3383 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AK-3427    TCGA-AK-3440    TCGA-AK-3443    TCGA-AK-3453    TCGA-AK-3455 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AK-3456    TCGA-AK-3465    TCGA-AL-3466    TCGA-AL-3467    TCGA-AL-3472 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AL-3473    TCGA-AS-3777    TCGA-AS-3778    TCGA-B2-3923    TCGA-B2-3924 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-B2-4098    TCGA-B2-4099    TCGA-B3-3925    TCGA-B3-3926    TCGA-B3-4103 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-B3-4104    TCGA-B8-4143    TCGA-B8-4148    TCGA-B8-4151    TCGA-B8-4154 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-B8-4619    TCGA-B8-4620    TCGA-B9-4113    TCGA-B9-4114    TCGA-B9-4115 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-B9-4116    TCGA-B9-4117    TCGA-BP-4161    TCGA-BP-4162    TCGA-BP-4163 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-BP-4164    TCGA-BP-4167    TCGA-CJ-4634    TCGA-CJ-4636    TCGA-CJ-4637 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-CJ-4638    TCGA-CJ-4640    TCGA-CJ-4641    TCGA-CJ-4643    TCGA-CJ-4644 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  ATM MUTATED        3      7      6
  ATM WILD-TYPE    177    235    237
D16V3, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1           3           177
  CLUS_2           7           235
  CLUS_3           6           237
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  ATM MUTATED        3      8      1
  ATM WILD-TYPE    100    247    118
D16V4, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1           3           100
  CLUS_2           8           247
  CLUS_3           1           118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATM MUTATED        3      4      8      1
  ATM WILD-TYPE     95    170    237    148
D16V5, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1           3            95
  CLUS_2           4           170
  CLUS_3           8           237
  CLUS_4           1           148
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ATM MUTATED        3      0      5      3      4      1
  ATM WILD-TYPE     77     90    172    135     86     90
D16V6, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1           3            77
  CLUS_2           0            90
  CLUS_3           5           172
  CLUS_4           3           135
  CLUS_5           4            86
  CLUS_6           1            90
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  ATM MUTATED        5      2      8
  ATM WILD-TYPE    209    146    288
D16V7, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1           5           209
  CLUS_2           2           146
  CLUS_3           8           288
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  ATM MUTATED        3     11      1
  ATM WILD-TYPE     69    465    109
D16V8, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1           3            69
  CLUS_2          11           465
  CLUS_3           1           109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATM MUTATED        1      2      0      2
  ATM WILD-TYPE     75     58     42     97
D16V9, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1           1            75
  CLUS_2           2            58
  CLUS_3           0            42
  CLUS_4           2            97
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATM MUTATED        0      1      0      2      2
  ATM WILD-TYPE     26     42     62     98     44
D16V10, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1           0            26
  CLUS_2           1            42
  CLUS_3           0            62
  CLUS_4           2            98
  CLUS_5           2            44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = ZNF814 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF814 MUTATED        0      0      0      0
  ZNF814 WILD-TYPE     21     17      9     14
D17V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF814 MUTATED        0      0      0      0      0
  ZNF814 WILD-TYPE     11     17     14     10      9
D17V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF814 MUTATED        6      0      7
  ZNF814 WILD-TYPE    174    242    236
D17V3, multiclass
        clus
vv       ZNF814 MUTATED ZNF814 WILD-TYPE
  CLUS_1              6              174
  CLUS_2              0              242
  CLUS_3              7              236
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF814 MUTATED        4      2      7
  ZNF814 WILD-TYPE     99    253    112
D17V4, multiclass
        clus
vv       ZNF814 MUTATED ZNF814 WILD-TYPE
  CLUS_1              4               99
  CLUS_2              2              253
  CLUS_3              7              112
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF814 MUTATED        3      1      1      8
  ZNF814 WILD-TYPE     95    173    244    141
D17V5, multiclass
        clus
vv       ZNF814 MUTATED ZNF814 WILD-TYPE
  CLUS_1              3               95
  CLUS_2              1              173
  CLUS_3              1              244
  CLUS_4              8              141
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZNF814 MUTATED        3      5      1      1      0      3
  ZNF814 WILD-TYPE     77     85    176    137     90     88
D17V6, multiclass
        clus
vv       ZNF814 MUTATED ZNF814 WILD-TYPE
  CLUS_1              3               77
  CLUS_2              5               85
  CLUS_3              1              176
  CLUS_4              1              137
  CLUS_5              0               90
  CLUS_6              3               88
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF814 MUTATED        7      5      1
  ZNF814 WILD-TYPE    207    143    295
D17V7, multiclass
        clus
vv       ZNF814 MUTATED ZNF814 WILD-TYPE
  CLUS_1              7              207
  CLUS_2              5              143
  CLUS_3              1              295
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF814 MUTATED        3      5      5
  ZNF814 WILD-TYPE     69    471    105
D17V8, multiclass
        clus
vv       ZNF814 MUTATED ZNF814 WILD-TYPE
  CLUS_1              3               69
  CLUS_2              5              471
  CLUS_3              5              105
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF814 MUTATED        5      2      1      2
  ZNF814 WILD-TYPE     71     58     41     97
D17V9, multiclass
        clus
vv       ZNF814 MUTATED ZNF814 WILD-TYPE
  CLUS_1              5               71
  CLUS_2              2               58
  CLUS_3              1               41
  CLUS_4              2               97
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF814 MUTATED        1      2      4      1      2
  ZNF814 WILD-TYPE     25     41     58     99     44
D17V10, multiclass
        clus
vv       ZNF814 MUTATED ZNF814 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              2               41
  CLUS_3              4               58
  CLUS_4              1               99
  CLUS_5              2               44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = DNMT3A MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNMT3A MUTATED        0      0      0      0
  DNMT3A WILD-TYPE     21     17      9     14
D18V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DNMT3A MUTATED        0      0      0      0      0
  DNMT3A WILD-TYPE     11     17     14     10      9
D18V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DNMT3A MUTATED        2      4      4
  DNMT3A WILD-TYPE    178    238    239
D18V3, multiclass
        clus
vv       DNMT3A MUTATED DNMT3A WILD-TYPE
  CLUS_1              2              178
  CLUS_2              4              238
  CLUS_3              4              239
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DNMT3A MUTATED        0      5      3
  DNMT3A WILD-TYPE    103    250    116
D18V4, multiclass
        clus
vv       DNMT3A MUTATED DNMT3A WILD-TYPE
  CLUS_1              0              103
  CLUS_2              5              250
  CLUS_3              3              116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNMT3A MUTATED        0      0      5      5
  DNMT3A WILD-TYPE     98    174    240    144
D18V5, multiclass
        clus
vv       DNMT3A MUTATED DNMT3A WILD-TYPE
  CLUS_1              0               98
  CLUS_2              0              174
  CLUS_3              5              240
  CLUS_4              5              144
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DNMT3A MUTATED        0      2      2      0      3      3
  DNMT3A WILD-TYPE     80     88    175    138     87     88
D18V6, multiclass
        clus
vv       DNMT3A MUTATED DNMT3A WILD-TYPE
  CLUS_1              0               80
  CLUS_2              2               88
  CLUS_3              2              175
  CLUS_4              0              138
  CLUS_5              3               87
  CLUS_6              3               88
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DNMT3A MUTATED        4      2      3
  DNMT3A WILD-TYPE    210    146    293
D18V7, multiclass
        clus
vv       DNMT3A MUTATED DNMT3A WILD-TYPE
  CLUS_1              4              210
  CLUS_2              2              146
  CLUS_3              3              293
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DNMT3A MUTATED        0      6      3
  DNMT3A WILD-TYPE     72    470    107
D18V8, multiclass
        clus
vv       DNMT3A MUTATED DNMT3A WILD-TYPE
  CLUS_1              0               72
  CLUS_2              6              470
  CLUS_3              3              107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNMT3A MUTATED        2      1      0      1
  DNMT3A WILD-TYPE     74     59     42     98
D18V9, multiclass
        clus
vv       DNMT3A MUTATED DNMT3A WILD-TYPE
  CLUS_1              2               74
  CLUS_2              1               59
  CLUS_3              0               42
  CLUS_4              1               98
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DNMT3A MUTATED        0      2      1      1      0
  DNMT3A WILD-TYPE     26     41     61     99     46
D18V10, multiclass
        clus
vv       DNMT3A MUTATED DNMT3A WILD-TYPE
  CLUS_1              0               26
  CLUS_2              2               41
  CLUS_3              1               61
  CLUS_4              1               99
  CLUS_5              0               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = CDK12 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDK12 MUTATED        1      0      0      0
  CDK12 WILD-TYPE     20     17      9     14
D19V1, multiclass
[1] "Remove cluster labels:" "CDK12 MUTATED"         
clus
  CDK12 MUTATED CDK12 WILD-TYPE 
              1              60 
     TCGA-A3-3311      TCGA-A3-3316      TCGA-A3-3317      TCGA-A3-3323 
"CDK12 WILD-TYPE" "CDK12 WILD-TYPE" "CDK12 WILD-TYPE" "CDK12 WILD-TYPE" 
     TCGA-A3-3326      TCGA-A3-3331      TCGA-A3-3347      TCGA-A3-3349 
"CDK12 WILD-TYPE" "CDK12 WILD-TYPE" "CDK12 WILD-TYPE" "CDK12 WILD-TYPE" 
     TCGA-A3-3362      TCGA-A3-3363      TCGA-A3-3365      TCGA-A3-3374 
"CDK12 WILD-TYPE" "CDK12 WILD-TYPE" "CDK12 WILD-TYPE" "CDK12 WILD-TYPE" 
     TCGA-A3-3380      TCGA-A3-3383      TCGA-AK-3427      TCGA-AK-3440 
"CDK12 WILD-TYPE" "CDK12 WILD-TYPE" "CDK12 WILD-TYPE" "CDK12 WILD-TYPE" 
     TCGA-AK-3443      TCGA-AK-3453      TCGA-AK-3455      TCGA-AK-3456 
"CDK12 WILD-TYPE" "CDK12 WILD-TYPE" "CDK12 WILD-TYPE" "CDK12 WILD-TYPE" 
     TCGA-AK-3465      TCGA-AL-3466      TCGA-AL-3467      TCGA-AL-3472 
"CDK12 WILD-TYPE" "CDK12 WILD-TYPE" "CDK12 WILD-TYPE" "CDK12 WILD-TYPE" 
     TCGA-AL-3473      TCGA-AS-3777      TCGA-AS-3778      TCGA-B2-3923 
"CDK12 WILD-TYPE" "CDK12 WILD-TYPE" "CDK12 WILD-TYPE" "CDK12 WILD-TYPE" 
     TCGA-B2-3924      TCGA-B2-4098      TCGA-B2-4099      TCGA-B3-3925 
"CDK12 WILD-TYPE" "CDK12 WILD-TYPE" "CDK12 WILD-TYPE" "CDK12 WILD-TYPE" 
     TCGA-B3-3926      TCGA-B3-4103      TCGA-B3-4104      TCGA-B8-4143 
"CDK12 WILD-TYPE" "CDK12 WILD-TYPE" "CDK12 WILD-TYPE" "CDK12 WILD-TYPE" 
     TCGA-B8-4148      TCGA-B8-4151      TCGA-B8-4154      TCGA-B8-4619 
"CDK12 WILD-TYPE" "CDK12 WILD-TYPE" "CDK12 WILD-TYPE" "CDK12 WILD-TYPE" 
     TCGA-B8-4620      TCGA-B9-4113      TCGA-B9-4114      TCGA-B9-4115 
"CDK12 WILD-TYPE" "CDK12 WILD-TYPE" "CDK12 WILD-TYPE" "CDK12 WILD-TYPE" 
     TCGA-B9-4116      TCGA-B9-4117      TCGA-BP-4161      TCGA-BP-4162 
"CDK12 WILD-TYPE" "CDK12 WILD-TYPE" "CDK12 WILD-TYPE" "CDK12 WILD-TYPE" 
     TCGA-BP-4163      TCGA-BP-4164      TCGA-BP-4167      TCGA-CJ-4634 
"CDK12 WILD-TYPE" "CDK12 WILD-TYPE" "CDK12 WILD-TYPE" "CDK12 WILD-TYPE" 
     TCGA-CJ-4636      TCGA-CJ-4637      TCGA-CJ-4638      TCGA-CJ-4639 
"CDK12 WILD-TYPE" "CDK12 WILD-TYPE" "CDK12 WILD-TYPE" "CDK12 WILD-TYPE" 
     TCGA-CJ-4640      TCGA-CJ-4641      TCGA-CJ-4643      TCGA-CJ-4644 
"CDK12 WILD-TYPE" "CDK12 WILD-TYPE" "CDK12 WILD-TYPE" "CDK12 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDK12 MUTATED        1      0      0      0      0
  CDK12 WILD-TYPE     10     17     14     10      9
D19V2, multiclass
[1] "Remove cluster labels:" "CDK12 MUTATED"         
clus
  CDK12 MUTATED CDK12 WILD-TYPE 
              1              60 
     TCGA-A3-3311      TCGA-A3-3316      TCGA-A3-3317      TCGA-A3-3323 
"CDK12 WILD-TYPE" "CDK12 WILD-TYPE" "CDK12 WILD-TYPE" "CDK12 WILD-TYPE" 
     TCGA-A3-3326      TCGA-A3-3331      TCGA-A3-3347      TCGA-A3-3349 
"CDK12 WILD-TYPE" "CDK12 WILD-TYPE" "CDK12 WILD-TYPE" "CDK12 WILD-TYPE" 
     TCGA-A3-3362      TCGA-A3-3363      TCGA-A3-3365      TCGA-A3-3374 
"CDK12 WILD-TYPE" "CDK12 WILD-TYPE" "CDK12 WILD-TYPE" "CDK12 WILD-TYPE" 
     TCGA-A3-3380      TCGA-A3-3383      TCGA-AK-3427      TCGA-AK-3440 
"CDK12 WILD-TYPE" "CDK12 WILD-TYPE" "CDK12 WILD-TYPE" "CDK12 WILD-TYPE" 
     TCGA-AK-3443      TCGA-AK-3453      TCGA-AK-3455      TCGA-AK-3456 
"CDK12 WILD-TYPE" "CDK12 WILD-TYPE" "CDK12 WILD-TYPE" "CDK12 WILD-TYPE" 
     TCGA-AK-3465      TCGA-AL-3466      TCGA-AL-3467      TCGA-AL-3472 
"CDK12 WILD-TYPE" "CDK12 WILD-TYPE" "CDK12 WILD-TYPE" "CDK12 WILD-TYPE" 
     TCGA-AL-3473      TCGA-AS-3777      TCGA-AS-3778      TCGA-B2-3923 
"CDK12 WILD-TYPE" "CDK12 WILD-TYPE" "CDK12 WILD-TYPE" "CDK12 WILD-TYPE" 
     TCGA-B2-3924      TCGA-B2-4098      TCGA-B2-4099      TCGA-B3-3925 
"CDK12 WILD-TYPE" "CDK12 WILD-TYPE" "CDK12 WILD-TYPE" "CDK12 WILD-TYPE" 
     TCGA-B3-3926      TCGA-B3-4103      TCGA-B3-4104      TCGA-B8-4143 
"CDK12 WILD-TYPE" "CDK12 WILD-TYPE" "CDK12 WILD-TYPE" "CDK12 WILD-TYPE" 
     TCGA-B8-4148      TCGA-B8-4151      TCGA-B8-4154      TCGA-B8-4619 
"CDK12 WILD-TYPE" "CDK12 WILD-TYPE" "CDK12 WILD-TYPE" "CDK12 WILD-TYPE" 
     TCGA-B8-4620      TCGA-B9-4113      TCGA-B9-4114      TCGA-B9-4115 
"CDK12 WILD-TYPE" "CDK12 WILD-TYPE" "CDK12 WILD-TYPE" "CDK12 WILD-TYPE" 
     TCGA-B9-4116      TCGA-B9-4117      TCGA-BP-4161      TCGA-BP-4162 
"CDK12 WILD-TYPE" "CDK12 WILD-TYPE" "CDK12 WILD-TYPE" "CDK12 WILD-TYPE" 
     TCGA-BP-4163      TCGA-BP-4164      TCGA-BP-4167      TCGA-CJ-4634 
"CDK12 WILD-TYPE" "CDK12 WILD-TYPE" "CDK12 WILD-TYPE" "CDK12 WILD-TYPE" 
     TCGA-CJ-4636      TCGA-CJ-4637      TCGA-CJ-4638      TCGA-CJ-4639 
"CDK12 WILD-TYPE" "CDK12 WILD-TYPE" "CDK12 WILD-TYPE" "CDK12 WILD-TYPE" 
     TCGA-CJ-4640      TCGA-CJ-4641      TCGA-CJ-4643      TCGA-CJ-4644 
"CDK12 WILD-TYPE" "CDK12 WILD-TYPE" "CDK12 WILD-TYPE" "CDK12 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDK12 MUTATED        2      3      4
  CDK12 WILD-TYPE    178    239    239
D19V3, multiclass
        clus
vv       CDK12 MUTATED CDK12 WILD-TYPE
  CLUS_1             2             178
  CLUS_2             3             239
  CLUS_3             4             239
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDK12 MUTATED        2      4      1
  CDK12 WILD-TYPE    101    251    118
D19V4, multiclass
        clus
vv       CDK12 MUTATED CDK12 WILD-TYPE
  CLUS_1             2             101
  CLUS_2             4             251
  CLUS_3             1             118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDK12 MUTATED        1      3      3      2
  CDK12 WILD-TYPE     97    171    242    147
D19V5, multiclass
        clus
vv       CDK12 MUTATED CDK12 WILD-TYPE
  CLUS_1             1              97
  CLUS_2             3             171
  CLUS_3             3             242
  CLUS_4             2             147
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CDK12 MUTATED        1      1      2      3      1      1
  CDK12 WILD-TYPE     79     89    175    135     89     90
D19V6, multiclass
        clus
vv       CDK12 MUTATED CDK12 WILD-TYPE
  CLUS_1             1              79
  CLUS_2             1              89
  CLUS_3             2             175
  CLUS_4             3             135
  CLUS_5             1              89
  CLUS_6             1              90
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDK12 MUTATED        3      1      5
  CDK12 WILD-TYPE    211    147    291
D19V7, multiclass
        clus
vv       CDK12 MUTATED CDK12 WILD-TYPE
  CLUS_1             3             211
  CLUS_2             1             147
  CLUS_3             5             291
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDK12 MUTATED        1      8      0
  CDK12 WILD-TYPE     71    468    110
D19V8, multiclass
        clus
vv       CDK12 MUTATED CDK12 WILD-TYPE
  CLUS_1             1              71
  CLUS_2             8             468
  CLUS_3             0             110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDK12 MUTATED        1      1      1      2
  CDK12 WILD-TYPE     75     59     41     97
D19V9, multiclass
        clus
vv       CDK12 MUTATED CDK12 WILD-TYPE
  CLUS_1             1              75
  CLUS_2             1              59
  CLUS_3             1              41
  CLUS_4             2              97
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDK12 MUTATED        1      0      0      3      1
  CDK12 WILD-TYPE     25     43     62     97     45
D19V10, multiclass
        clus
vv       CDK12 MUTATED CDK12 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             0              43
  CLUS_3             0              62
  CLUS_4             3              97
  CLUS_5             1              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = CSGALNACT2 MUTATION ANALYSIS
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CSGALNACT2 MUTATED        0      0      0      0
  CSGALNACT2 WILD-TYPE     21     17      9     14
D20V1, multiclass
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CSGALNACT2 MUTATED        0      0      0      0      0
  CSGALNACT2 WILD-TYPE     11     17     14     10      9
D20V2, multiclass
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3
  CSGALNACT2 MUTATED        6      0      2
  CSGALNACT2 WILD-TYPE    174    242    241
D20V3, multiclass
        clus
vv       CSGALNACT2 MUTATED CSGALNACT2 WILD-TYPE
  CLUS_1                  6                  174
  CLUS_2                  0                  242
  CLUS_3                  2                  241
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3
  CSGALNACT2 MUTATED        3      2      3
  CSGALNACT2 WILD-TYPE    100    253    116
D20V4, multiclass
        clus
vv       CSGALNACT2 MUTATED CSGALNACT2 WILD-TYPE
  CLUS_1                  3                  100
  CLUS_2                  2                  253
  CLUS_3                  3                  116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CSGALNACT2 MUTATED        3      1      0      4
  CSGALNACT2 WILD-TYPE     95    173    245    145
D20V5, multiclass
        clus
vv       CSGALNACT2 MUTATED CSGALNACT2 WILD-TYPE
  CLUS_1                  3                   95
  CLUS_2                  1                  173
  CLUS_3                  0                  245
  CLUS_4                  4                  145
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CSGALNACT2 MUTATED        2      3      0      1      0      2
  CSGALNACT2 WILD-TYPE     78     87    177    137     90     89
D20V6, multiclass
        clus
vv       CSGALNACT2 MUTATED CSGALNACT2 WILD-TYPE
  CLUS_1                  2                   78
  CLUS_2                  3                   87
  CLUS_3                  0                  177
  CLUS_4                  1                  137
  CLUS_5                  0                   90
  CLUS_6                  2                   89
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3
  CSGALNACT2 MUTATED        6      1      1
  CSGALNACT2 WILD-TYPE    208    147    295
D20V7, multiclass
        clus
vv       CSGALNACT2 MUTATED CSGALNACT2 WILD-TYPE
  CLUS_1                  6                  208
  CLUS_2                  1                  147
  CLUS_3                  1                  295
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3
  CSGALNACT2 MUTATED        2      3      3
  CSGALNACT2 WILD-TYPE     70    473    107
D20V8, multiclass
        clus
vv       CSGALNACT2 MUTATED CSGALNACT2 WILD-TYPE
  CLUS_1                  2                   70
  CLUS_2                  3                  473
  CLUS_3                  3                  107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CSGALNACT2 MUTATED        0      2      1      0
  CSGALNACT2 WILD-TYPE     76     58     41     99
D20V9, multiclass
        clus
vv       CSGALNACT2 MUTATED CSGALNACT2 WILD-TYPE
  CLUS_1                  0                   76
  CLUS_2                  2                   58
  CLUS_3                  1                   41
  CLUS_4                  0                   99
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CSGALNACT2 MUTATED        0      0      2      0      1
  CSGALNACT2 WILD-TYPE     26     43     60    100     45
D20V10, multiclass
        clus
vv       CSGALNACT2 MUTATED CSGALNACT2 WILD-TYPE
  CLUS_1                  0                   26
  CLUS_2                  0                   43
  CLUS_3                  2                   60
  CLUS_4                  0                  100
  CLUS_5                  1                   45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = PIK3CA MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3CA MUTATED        0      0      0      0
  PIK3CA WILD-TYPE     21     17      9     14
D21V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PIK3CA MUTATED        0      0      0      0      0
  PIK3CA WILD-TYPE     11     17     14     10      9
D21V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3CA MUTATED        1      5      8
  PIK3CA WILD-TYPE    179    237    235
D21V3, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              1              179
  CLUS_2              5              237
  CLUS_3              8              235
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3CA MUTATED        1      6      1
  PIK3CA WILD-TYPE    102    249    118
D21V4, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              1              102
  CLUS_2              6              249
  CLUS_3              1              118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3CA MUTATED        0      6      7      1
  PIK3CA WILD-TYPE     98    168    238    148
D21V5, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              0               98
  CLUS_2              6              168
  CLUS_3              7              238
  CLUS_4              1              148
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PIK3CA MUTATED        0      1      3      5      4      1
  PIK3CA WILD-TYPE     80     89    174    133     86     90
D21V6, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              0               80
  CLUS_2              1               89
  CLUS_3              3              174
  CLUS_4              5              133
  CLUS_5              4               86
  CLUS_6              1               90
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3CA MUTATED        3      4      7
  PIK3CA WILD-TYPE    211    144    289
D21V7, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              3              211
  CLUS_2              4              144
  CLUS_3              7              289
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3CA MUTATED        0     14      0
  PIK3CA WILD-TYPE     72    462    110
D21V8, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              0               72
  CLUS_2             14              462
  CLUS_3              0              110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3CA MUTATED        0      1      1      0
  PIK3CA WILD-TYPE     76     59     41     99
D21V9, multiclass
[1] "Remove cluster labels:" "PIK3CA MUTATED"        
clus
  PIK3CA MUTATED PIK3CA WILD-TYPE 
               2              275 
      TCGA-A3-3317       TCGA-A3-3358       TCGA-A3-3387       TCGA-A4-7286 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-A4-7287       TCGA-A4-7288       TCGA-A4-7585       TCGA-A4-7734 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-A4-7828       TCGA-A4-7915       TCGA-A4-7996       TCGA-A4-7997 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-A4-8098       TCGA-A4-8310       TCGA-A4-8312       TCGA-A4-8515 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-A4-8517       TCGA-A4-8518       TCGA-A4-8630       TCGA-A4-A57E 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-A4-A5XZ       TCGA-A4-A5Y0       TCGA-A4-A5Y1       TCGA-AK-3440 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AK-3458       TCGA-AK-3465       TCGA-AL-3466       TCGA-AL-3472 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AL-3473       TCGA-AL-7173       TCGA-AT-A5NU       TCGA-B0-4700 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-B0-4706       TCGA-B0-4710       TCGA-B0-4712       TCGA-B0-4810 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-B0-4811       TCGA-B0-4836       TCGA-B0-4837       TCGA-B0-4852 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-B0-5080       TCGA-B0-5085       TCGA-B0-5088       TCGA-B0-5399 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-B0-5691       TCGA-B0-5692       TCGA-B0-5693       TCGA-B0-5694 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-B0-5695       TCGA-B0-5696       TCGA-B0-5699       TCGA-B0-5702 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-B0-5705       TCGA-B0-5709       TCGA-B1-5398       TCGA-B1-A47N 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-B1-A654       TCGA-B1-A656       TCGA-B1-A657       TCGA-B2-3923 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-B2-3924       TCGA-B2-5633       TCGA-B2-5635       TCGA-B3-3925 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-B3-4104       TCGA-B3-8121       TCGA-B4-5377       TCGA-B4-5836 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-B8-4621       TCGA-B8-5545       TCGA-B8-5550       TCGA-B8-5551 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-B8-5552       TCGA-B8-5553       TCGA-B9-4115       TCGA-B9-4117 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-B9-5156       TCGA-B9-A44B       TCGA-B9-A5W9       TCGA-B9-A69E 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-BP-4173       TCGA-BP-4340       TCGA-BP-4761       TCGA-BP-4770 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-BP-4787       TCGA-BP-4789       TCGA-BP-4790       TCGA-BP-4804 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-BP-4807       TCGA-BP-4961       TCGA-BP-4967       TCGA-BP-4968 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-BP-4970       TCGA-BP-4974       TCGA-BP-4976       TCGA-BP-4981 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-BP-4982       TCGA-BP-4985       TCGA-BP-4988       TCGA-BP-4989 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-BP-4992       TCGA-BP-4995       TCGA-BP-4998       TCGA-BP-5001 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-BP-5008       TCGA-BP-5009       TCGA-BQ-5876       TCGA-BQ-5877 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-BQ-5878       TCGA-BQ-5879       TCGA-BQ-5880       TCGA-BQ-5881 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-BQ-5882       TCGA-BQ-5883       TCGA-BQ-5884       TCGA-BQ-5886 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-BQ-5887       TCGA-BQ-5888       TCGA-BQ-5889       TCGA-BQ-5890 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-BQ-5891       TCGA-BQ-5892       TCGA-BQ-5894       TCGA-BQ-7044 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-BQ-7045       TCGA-BQ-7046       TCGA-BQ-7048       TCGA-BQ-7050 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-BQ-7051       TCGA-BQ-7053       TCGA-BQ-7055       TCGA-BQ-7058 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-BQ-7059       TCGA-BQ-7060       TCGA-BQ-7061       TCGA-BQ-7062 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CJ-4870       TCGA-CJ-4875       TCGA-CJ-4876       TCGA-CJ-4878 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CJ-4881       TCGA-CJ-4887       TCGA-CJ-4889       TCGA-CJ-4890 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CJ-4895       TCGA-CJ-4900       TCGA-CJ-5671       TCGA-CJ-5675 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CJ-5676       TCGA-CJ-5681       TCGA-CJ-5683       TCGA-CJ-5686 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CJ-6031       TCGA-CJ-6032       TCGA-CW-5585       TCGA-CW-5589 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CW-6087       TCGA-CZ-4854       TCGA-CZ-4857       TCGA-CZ-4858 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CZ-5453       TCGA-CZ-5454       TCGA-CZ-5455       TCGA-CZ-5457 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CZ-5459       TCGA-CZ-5462       TCGA-CZ-5463       TCGA-CZ-5466 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CZ-5467       TCGA-CZ-5469       TCGA-CZ-5470       TCGA-CZ-5989 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-DV-5565       TCGA-DV-5566       TCGA-DV-5569       TCGA-DW-5560 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-DW-5561       TCGA-DW-7834       TCGA-DW-7837       TCGA-DW-7838 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-DW-7839       TCGA-DW-7840       TCGA-DW-7842       TCGA-DZ-6131 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-DZ-6132       TCGA-DZ-6133       TCGA-DZ-6135       TCGA-EU-5904 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-EV-5901       TCGA-EV-5902       TCGA-EV-5903       TCGA-F9-A4JJ 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-G7-6789       TCGA-G7-6790       TCGA-G7-6792       TCGA-G7-6793 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-G7-6795       TCGA-G7-6796       TCGA-G7-7501       TCGA-G7-7502 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-G7-A4TM       TCGA-GL-6846       TCGA-GL-7773       TCGA-GL-7966 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-GL-8500       TCGA-GL-A4EM       TCGA-GL-A59T       TCGA-HE-7128 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-HE-7130       TCGA-HE-A5NJ       TCGA-IA-A40U       TCGA-IA-A40X 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-IA-A40Y       TCGA-IZ-8195       TCGA-IZ-8196       TCGA-IZ-A6M9 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-J7-6720       TCGA-J7-8537       TCGA-KL-8323       TCGA-KL-8324 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-KL-8327       TCGA-KL-8328       TCGA-KL-8331       TCGA-KL-8332 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-KL-8333       TCGA-KL-8334       TCGA-KL-8335       TCGA-KL-8336 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-KL-8338       TCGA-KL-8339       TCGA-KL-8340       TCGA-KL-8341 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-KL-8342       TCGA-KL-8343       TCGA-KL-8344       TCGA-KL-8345 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-KM-8438       TCGA-KM-8439       TCGA-KM-8441       TCGA-KM-8442 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-KM-8639       TCGA-KN-8418       TCGA-KN-8419       TCGA-KN-8422 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-KN-8423       TCGA-KN-8424       TCGA-KN-8426       TCGA-KN-8427 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-KN-8428       TCGA-KN-8429       TCGA-KN-8430       TCGA-KN-8431 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-KN-8432       TCGA-KN-8433       TCGA-KN-8434       TCGA-KN-8436 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-KN-8437       TCGA-KO-8404       TCGA-KO-8405       TCGA-KO-8408 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-KO-8409       TCGA-KO-8410       TCGA-KO-8413       TCGA-KO-8415 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-KO-8416       TCGA-KO-8417       TCGA-KV-A6GD       TCGA-KV-A6GE 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-P4-A5E6       TCGA-P4-A5E7       TCGA-P4-A5E8       TCGA-P4-A5EA 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-PJ-A5Z8       TCGA-PJ-A5Z9       TCGA-Q2-A5QZ 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PIK3CA MUTATED        0      0      2      0      0
  PIK3CA WILD-TYPE     26     43     60    100     46
D21V10, multiclass
[1] "Remove cluster labels:" "PIK3CA MUTATED"        
clus
  PIK3CA MUTATED PIK3CA WILD-TYPE 
               2              275 
      TCGA-A3-3317       TCGA-A3-3358       TCGA-A3-3387       TCGA-A4-7286 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-A4-7287       TCGA-A4-7288       TCGA-A4-7585       TCGA-A4-7734 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-A4-7828       TCGA-A4-7915       TCGA-A4-7996       TCGA-A4-7997 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-A4-8098       TCGA-A4-8310       TCGA-A4-8312       TCGA-A4-8515 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-A4-8517       TCGA-A4-8518       TCGA-A4-8630       TCGA-A4-A57E 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-A4-A5XZ       TCGA-A4-A5Y0       TCGA-A4-A5Y1       TCGA-AK-3440 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AK-3458       TCGA-AK-3465       TCGA-AL-3466       TCGA-AL-3472 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AL-3473       TCGA-AL-7173       TCGA-AT-A5NU       TCGA-B0-4700 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-B0-4706       TCGA-B0-4710       TCGA-B0-4712       TCGA-B0-4810 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-B0-4811       TCGA-B0-4836       TCGA-B0-4837       TCGA-B0-4852 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-B0-5080       TCGA-B0-5085       TCGA-B0-5088       TCGA-B0-5399 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-B0-5691       TCGA-B0-5692       TCGA-B0-5693       TCGA-B0-5694 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-B0-5695       TCGA-B0-5696       TCGA-B0-5699       TCGA-B0-5702 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-B0-5705       TCGA-B0-5709       TCGA-B1-5398       TCGA-B1-A47N 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-B1-A654       TCGA-B1-A656       TCGA-B1-A657       TCGA-B2-3923 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-B2-3924       TCGA-B2-5633       TCGA-B2-5635       TCGA-B3-3925 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-B3-4104       TCGA-B3-8121       TCGA-B4-5377       TCGA-B4-5836 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-B8-4621       TCGA-B8-5545       TCGA-B8-5550       TCGA-B8-5551 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-B8-5552       TCGA-B8-5553       TCGA-B9-4115       TCGA-B9-4117 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-B9-5156       TCGA-B9-A44B       TCGA-B9-A5W9       TCGA-B9-A69E 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-BP-4173       TCGA-BP-4340       TCGA-BP-4761       TCGA-BP-4770 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-BP-4787       TCGA-BP-4789       TCGA-BP-4790       TCGA-BP-4804 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-BP-4807       TCGA-BP-4961       TCGA-BP-4967       TCGA-BP-4968 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-BP-4970       TCGA-BP-4974       TCGA-BP-4976       TCGA-BP-4981 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-BP-4982       TCGA-BP-4985       TCGA-BP-4988       TCGA-BP-4989 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-BP-4992       TCGA-BP-4995       TCGA-BP-4998       TCGA-BP-5001 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-BP-5008       TCGA-BP-5009       TCGA-BQ-5876       TCGA-BQ-5877 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-BQ-5878       TCGA-BQ-5879       TCGA-BQ-5880       TCGA-BQ-5881 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-BQ-5882       TCGA-BQ-5883       TCGA-BQ-5884       TCGA-BQ-5886 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-BQ-5887       TCGA-BQ-5888       TCGA-BQ-5889       TCGA-BQ-5890 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-BQ-5891       TCGA-BQ-5892       TCGA-BQ-5894       TCGA-BQ-7044 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-BQ-7045       TCGA-BQ-7046       TCGA-BQ-7048       TCGA-BQ-7050 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-BQ-7051       TCGA-BQ-7053       TCGA-BQ-7055       TCGA-BQ-7058 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-BQ-7059       TCGA-BQ-7060       TCGA-BQ-7061       TCGA-BQ-7062 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CJ-4870       TCGA-CJ-4875       TCGA-CJ-4876       TCGA-CJ-4878 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CJ-4881       TCGA-CJ-4887       TCGA-CJ-4889       TCGA-CJ-4890 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CJ-4895       TCGA-CJ-4900       TCGA-CJ-5671       TCGA-CJ-5675 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CJ-5676       TCGA-CJ-5681       TCGA-CJ-5683       TCGA-CJ-5686 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CJ-6031       TCGA-CJ-6032       TCGA-CW-5585       TCGA-CW-5589 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CW-6087       TCGA-CZ-4854       TCGA-CZ-4857       TCGA-CZ-4858 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CZ-5453       TCGA-CZ-5454       TCGA-CZ-5455       TCGA-CZ-5457 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CZ-5459       TCGA-CZ-5462       TCGA-CZ-5463       TCGA-CZ-5466 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CZ-5467       TCGA-CZ-5469       TCGA-CZ-5470       TCGA-CZ-5989 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-DV-5565       TCGA-DV-5566       TCGA-DV-5569       TCGA-DW-5560 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-DW-5561       TCGA-DW-7834       TCGA-DW-7837       TCGA-DW-7838 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-DW-7839       TCGA-DW-7840       TCGA-DW-7842       TCGA-DZ-6131 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-DZ-6132       TCGA-DZ-6133       TCGA-DZ-6135       TCGA-EU-5904 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-EV-5901       TCGA-EV-5902       TCGA-EV-5903       TCGA-F9-A4JJ 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-G7-6789       TCGA-G7-6790       TCGA-G7-6792       TCGA-G7-6793 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-G7-6795       TCGA-G7-6796       TCGA-G7-7501       TCGA-G7-7502 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-G7-A4TM       TCGA-GL-6846       TCGA-GL-7773       TCGA-GL-7966 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-GL-8500       TCGA-GL-A4EM       TCGA-GL-A59T       TCGA-HE-7128 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-HE-7130       TCGA-HE-A5NJ       TCGA-IA-A40U       TCGA-IA-A40X 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-IA-A40Y       TCGA-IZ-8195       TCGA-IZ-8196       TCGA-IZ-A6M9 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-J7-6720       TCGA-J7-8537       TCGA-KL-8323       TCGA-KL-8324 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-KL-8327       TCGA-KL-8328       TCGA-KL-8331       TCGA-KL-8332 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-KL-8333       TCGA-KL-8334       TCGA-KL-8335       TCGA-KL-8336 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-KL-8338       TCGA-KL-8339       TCGA-KL-8340       TCGA-KL-8341 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-KL-8342       TCGA-KL-8343       TCGA-KL-8344       TCGA-KL-8345 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-KM-8438       TCGA-KM-8439       TCGA-KM-8441       TCGA-KM-8442 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-KM-8639       TCGA-KN-8418       TCGA-KN-8419       TCGA-KN-8422 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-KN-8423       TCGA-KN-8424       TCGA-KN-8426       TCGA-KN-8427 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-KN-8428       TCGA-KN-8429       TCGA-KN-8430       TCGA-KN-8431 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-KN-8432       TCGA-KN-8433       TCGA-KN-8434       TCGA-KN-8436 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-KN-8437       TCGA-KO-8404       TCGA-KO-8405       TCGA-KO-8408 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-KO-8409       TCGA-KO-8410       TCGA-KO-8413       TCGA-KO-8415 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-KO-8416       TCGA-KO-8417       TCGA-KV-A6GD       TCGA-KV-A6GE 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-P4-A5E6       TCGA-P4-A5E7       TCGA-P4-A5E8       TCGA-P4-A5EA 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-PJ-A5Z8       TCGA-PJ-A5Z9       TCGA-Q2-A5QZ 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 

Clustering(22) Variable = KIAA1751 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1751 MUTATED        0      0      0      0
  KIAA1751 WILD-TYPE     21     17      9     14
D22V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA1751 MUTATED        0      0      0      0      0
  KIAA1751 WILD-TYPE     11     17     14     10      9
D22V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1751 MUTATED        2      2      4
  KIAA1751 WILD-TYPE    178    240    239
D22V3, multiclass
        clus
vv       KIAA1751 MUTATED KIAA1751 WILD-TYPE
  CLUS_1                2                178
  CLUS_2                2                240
  CLUS_3                4                239
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1751 MUTATED        0      5      2
  KIAA1751 WILD-TYPE    103    250    117
D22V4, multiclass
        clus
vv       KIAA1751 MUTATED KIAA1751 WILD-TYPE
  CLUS_1                0                103
  CLUS_2                5                250
  CLUS_3                2                117
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1751 MUTATED        0      1      4      2
  KIAA1751 WILD-TYPE     98    173    241    147
D22V5, multiclass
        clus
vv       KIAA1751 MUTATED KIAA1751 WILD-TYPE
  CLUS_1                0                 98
  CLUS_2                1                173
  CLUS_3                4                241
  CLUS_4                2                147
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KIAA1751 MUTATED        0      0      3      1      1      2
  KIAA1751 WILD-TYPE     80     90    174    137     89     89
D22V6, multiclass
        clus
vv       KIAA1751 MUTATED KIAA1751 WILD-TYPE
  CLUS_1                0                 80
  CLUS_2                0                 90
  CLUS_3                3                174
  CLUS_4                1                137
  CLUS_5                1                 89
  CLUS_6                2                 89
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1751 MUTATED        2      0      6
  KIAA1751 WILD-TYPE    212    148    290
D22V7, multiclass
        clus
vv       KIAA1751 MUTATED KIAA1751 WILD-TYPE
  CLUS_1                2                212
  CLUS_2                0                148
  CLUS_3                6                290
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1751 MUTATED        0      6      2
  KIAA1751 WILD-TYPE     72    470    108
D22V8, multiclass
        clus
vv       KIAA1751 MUTATED KIAA1751 WILD-TYPE
  CLUS_1                0                 72
  CLUS_2                6                470
  CLUS_3                2                108
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1751 MUTATED        1      0      0      1
  KIAA1751 WILD-TYPE     75     60     42     98
D22V9, multiclass
[1] "Remove cluster labels:" "KIAA1751 MUTATED"      
clus
  KIAA1751 MUTATED KIAA1751 WILD-TYPE 
                 2                275 
        TCGA-A3-3317         TCGA-A3-3358         TCGA-A3-3387 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-A4-7286         TCGA-A4-7287         TCGA-A4-7288 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-A4-7585         TCGA-A4-7734         TCGA-A4-7828 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-A4-7915         TCGA-A4-7996         TCGA-A4-7997 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-A4-8098         TCGA-A4-8310         TCGA-A4-8312 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-A4-8515         TCGA-A4-8517         TCGA-A4-8518 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-A4-8630         TCGA-A4-A57E         TCGA-A4-A5XZ 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-A4-A5Y0         TCGA-A4-A5Y1         TCGA-AK-3440 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-AK-3458         TCGA-AK-3465         TCGA-AL-3466 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-AL-3472         TCGA-AL-3473         TCGA-AL-7173 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-AT-A5NU         TCGA-B0-4700         TCGA-B0-4706 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-B0-4710         TCGA-B0-4712         TCGA-B0-4810 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-B0-4811         TCGA-B0-4836         TCGA-B0-4837 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-B0-4852         TCGA-B0-5080         TCGA-B0-5085 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-B0-5088         TCGA-B0-5399         TCGA-B0-5691 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-B0-5692         TCGA-B0-5693         TCGA-B0-5694 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-B0-5695         TCGA-B0-5696         TCGA-B0-5699 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-B0-5702         TCGA-B0-5705         TCGA-B0-5709 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-B1-5398         TCGA-B1-A47N         TCGA-B1-A654 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-B1-A656         TCGA-B1-A657         TCGA-B2-3923 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-B2-3924         TCGA-B2-5633         TCGA-B2-5635 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-B3-3925         TCGA-B3-4104         TCGA-B3-8121 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-B4-5377         TCGA-B4-5836         TCGA-B8-4621 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-B8-5545         TCGA-B8-5550         TCGA-B8-5551 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-B8-5552         TCGA-B8-5553         TCGA-B9-4115 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-B9-4117         TCGA-B9-5156         TCGA-B9-A44B 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-B9-A5W9         TCGA-B9-A69E         TCGA-BP-4173 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-BP-4340         TCGA-BP-4761         TCGA-BP-4770 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-BP-4787         TCGA-BP-4789         TCGA-BP-4790 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-BP-4804         TCGA-BP-4807         TCGA-BP-4961 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-BP-4967         TCGA-BP-4968         TCGA-BP-4970 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-BP-4974         TCGA-BP-4976         TCGA-BP-4981 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-BP-4982         TCGA-BP-4985         TCGA-BP-4988 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-BP-4989         TCGA-BP-4992         TCGA-BP-4995 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-BP-4998         TCGA-BP-5001         TCGA-BP-5008 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-BP-5009         TCGA-BQ-5876         TCGA-BQ-5877 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-BQ-5878         TCGA-BQ-5879         TCGA-BQ-5880 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-BQ-5881         TCGA-BQ-5882         TCGA-BQ-5883 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-BQ-5884         TCGA-BQ-5886         TCGA-BQ-5887 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-BQ-5888         TCGA-BQ-5889         TCGA-BQ-5890 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-BQ-5891         TCGA-BQ-5892         TCGA-BQ-5893 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-BQ-5894         TCGA-BQ-7044         TCGA-BQ-7045 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-BQ-7046         TCGA-BQ-7048         TCGA-BQ-7050 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-BQ-7051         TCGA-BQ-7053         TCGA-BQ-7055 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-BQ-7058         TCGA-BQ-7059         TCGA-BQ-7060 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-BQ-7061         TCGA-BQ-7062         TCGA-CJ-4870 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-CJ-4875         TCGA-CJ-4876         TCGA-CJ-4878 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-CJ-4881         TCGA-CJ-4887         TCGA-CJ-4889 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-CJ-4890         TCGA-CJ-4895         TCGA-CJ-4900 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-CJ-5671         TCGA-CJ-5675         TCGA-CJ-5676 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-CJ-5681         TCGA-CJ-5683         TCGA-CJ-5686 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-CJ-6031         TCGA-CJ-6032         TCGA-CW-5585 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-CW-5589         TCGA-CW-6087         TCGA-CZ-4854 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-CZ-4857         TCGA-CZ-4858         TCGA-CZ-5453 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-CZ-5454         TCGA-CZ-5455         TCGA-CZ-5457 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-CZ-5459         TCGA-CZ-5462         TCGA-CZ-5463 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-CZ-5466         TCGA-CZ-5469         TCGA-CZ-5470 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-CZ-5989         TCGA-DV-5565         TCGA-DV-5566 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-DV-5569         TCGA-DW-5560         TCGA-DW-5561 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-DW-7834         TCGA-DW-7837         TCGA-DW-7838 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-DW-7839         TCGA-DW-7842         TCGA-DZ-6131 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-DZ-6132         TCGA-DZ-6133         TCGA-DZ-6134 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-DZ-6135         TCGA-EU-5904         TCGA-EV-5901 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-EV-5902         TCGA-EV-5903         TCGA-F9-A4JJ 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-G7-6789         TCGA-G7-6790         TCGA-G7-6792 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-G7-6793         TCGA-G7-6795         TCGA-G7-6796 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-G7-7501         TCGA-G7-7502         TCGA-G7-A4TM 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-GL-6846         TCGA-GL-7773         TCGA-GL-7966 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-GL-8500         TCGA-GL-A4EM         TCGA-GL-A59T 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-HE-7128         TCGA-HE-7130         TCGA-HE-A5NJ 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-IA-A40U         TCGA-IA-A40X         TCGA-IA-A40Y 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-IZ-8195         TCGA-IZ-8196         TCGA-IZ-A6M9 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-J7-6720         TCGA-J7-8537         TCGA-KL-8323 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-KL-8324         TCGA-KL-8327         TCGA-KL-8328 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-KL-8331         TCGA-KL-8332         TCGA-KL-8333 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-KL-8334         TCGA-KL-8335         TCGA-KL-8336 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-KL-8338         TCGA-KL-8339         TCGA-KL-8340 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-KL-8341         TCGA-KL-8342         TCGA-KL-8343 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-KL-8344         TCGA-KL-8345         TCGA-KM-8438 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-KM-8439         TCGA-KM-8441         TCGA-KM-8442 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-KM-8639         TCGA-KN-8418         TCGA-KN-8419 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-KN-8422         TCGA-KN-8423         TCGA-KN-8424 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-KN-8426         TCGA-KN-8427         TCGA-KN-8428 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-KN-8429         TCGA-KN-8430         TCGA-KN-8431 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-KN-8432         TCGA-KN-8433         TCGA-KN-8434 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-KN-8436         TCGA-KN-8437         TCGA-KO-8404 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-KO-8405         TCGA-KO-8408         TCGA-KO-8409 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-KO-8410         TCGA-KO-8413         TCGA-KO-8415 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-KO-8416         TCGA-KO-8417         TCGA-KV-A6GD 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-KV-A6GE         TCGA-P4-A5E6         TCGA-P4-A5E7 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-P4-A5E8         TCGA-P4-A5EA         TCGA-PJ-A5Z8 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-PJ-A5Z9         TCGA-Q2-A5QZ 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA1751 MUTATED        0      1      0      1      0
  KIAA1751 WILD-TYPE     26     42     62     99     46
D22V10, multiclass
[1] "Remove cluster labels:" "KIAA1751 MUTATED"      
clus
  KIAA1751 MUTATED KIAA1751 WILD-TYPE 
                 2                275 
        TCGA-A3-3317         TCGA-A3-3358         TCGA-A3-3387 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-A4-7286         TCGA-A4-7287         TCGA-A4-7288 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-A4-7585         TCGA-A4-7734         TCGA-A4-7828 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-A4-7915         TCGA-A4-7996         TCGA-A4-7997 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-A4-8098         TCGA-A4-8310         TCGA-A4-8312 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-A4-8515         TCGA-A4-8517         TCGA-A4-8518 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-A4-8630         TCGA-A4-A57E         TCGA-A4-A5XZ 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-A4-A5Y0         TCGA-A4-A5Y1         TCGA-AK-3440 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-AK-3458         TCGA-AK-3465         TCGA-AL-3466 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-AL-3472         TCGA-AL-3473         TCGA-AL-7173 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-AT-A5NU         TCGA-B0-4700         TCGA-B0-4706 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-B0-4710         TCGA-B0-4712         TCGA-B0-4810 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-B0-4811         TCGA-B0-4836         TCGA-B0-4837 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-B0-4852         TCGA-B0-5080         TCGA-B0-5085 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-B0-5088         TCGA-B0-5399         TCGA-B0-5691 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-B0-5692         TCGA-B0-5693         TCGA-B0-5694 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-B0-5695         TCGA-B0-5696         TCGA-B0-5699 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-B0-5702         TCGA-B0-5705         TCGA-B0-5709 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-B1-5398         TCGA-B1-A47N         TCGA-B1-A654 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-B1-A656         TCGA-B1-A657         TCGA-B2-3923 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-B2-3924         TCGA-B2-5633         TCGA-B2-5635 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-B3-3925         TCGA-B3-4104         TCGA-B3-8121 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-B4-5377         TCGA-B4-5836         TCGA-B8-4621 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-B8-5545         TCGA-B8-5550         TCGA-B8-5551 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-B8-5552         TCGA-B8-5553         TCGA-B9-4115 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-B9-4117         TCGA-B9-5156         TCGA-B9-A44B 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-B9-A5W9         TCGA-B9-A69E         TCGA-BP-4173 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-BP-4340         TCGA-BP-4761         TCGA-BP-4770 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-BP-4787         TCGA-BP-4789         TCGA-BP-4790 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-BP-4804         TCGA-BP-4807         TCGA-BP-4961 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-BP-4967         TCGA-BP-4968         TCGA-BP-4970 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-BP-4974         TCGA-BP-4976         TCGA-BP-4981 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-BP-4982         TCGA-BP-4985         TCGA-BP-4988 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-BP-4989         TCGA-BP-4992         TCGA-BP-4995 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-BP-4998         TCGA-BP-5001         TCGA-BP-5008 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-BP-5009         TCGA-BQ-5876         TCGA-BQ-5877 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-BQ-5878         TCGA-BQ-5879         TCGA-BQ-5880 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-BQ-5881         TCGA-BQ-5882         TCGA-BQ-5883 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-BQ-5884         TCGA-BQ-5886         TCGA-BQ-5887 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-BQ-5888         TCGA-BQ-5889         TCGA-BQ-5890 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-BQ-5891         TCGA-BQ-5892         TCGA-BQ-5893 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-BQ-5894         TCGA-BQ-7044         TCGA-BQ-7045 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-BQ-7046         TCGA-BQ-7048         TCGA-BQ-7050 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-BQ-7051         TCGA-BQ-7053         TCGA-BQ-7055 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-BQ-7058         TCGA-BQ-7059         TCGA-BQ-7060 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-BQ-7061         TCGA-BQ-7062         TCGA-CJ-4870 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-CJ-4875         TCGA-CJ-4876         TCGA-CJ-4878 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-CJ-4881         TCGA-CJ-4887         TCGA-CJ-4889 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-CJ-4890         TCGA-CJ-4895         TCGA-CJ-4900 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-CJ-5671         TCGA-CJ-5675         TCGA-CJ-5676 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-CJ-5681         TCGA-CJ-5683         TCGA-CJ-5686 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-CJ-6031         TCGA-CJ-6032         TCGA-CW-5585 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-CW-5589         TCGA-CW-6087         TCGA-CZ-4854 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-CZ-4857         TCGA-CZ-4858         TCGA-CZ-5453 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-CZ-5454         TCGA-CZ-5455         TCGA-CZ-5457 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-CZ-5459         TCGA-CZ-5462         TCGA-CZ-5463 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-CZ-5466         TCGA-CZ-5469         TCGA-CZ-5470 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-CZ-5989         TCGA-DV-5565         TCGA-DV-5566 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-DV-5569         TCGA-DW-5560         TCGA-DW-5561 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-DW-7834         TCGA-DW-7837         TCGA-DW-7838 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-DW-7839         TCGA-DW-7842         TCGA-DZ-6131 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-DZ-6132         TCGA-DZ-6133         TCGA-DZ-6134 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-DZ-6135         TCGA-EU-5904         TCGA-EV-5901 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-EV-5902         TCGA-EV-5903         TCGA-F9-A4JJ 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-G7-6789         TCGA-G7-6790         TCGA-G7-6792 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-G7-6793         TCGA-G7-6795         TCGA-G7-6796 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-G7-7501         TCGA-G7-7502         TCGA-G7-A4TM 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-GL-6846         TCGA-GL-7773         TCGA-GL-7966 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-GL-8500         TCGA-GL-A4EM         TCGA-GL-A59T 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-HE-7128         TCGA-HE-7130         TCGA-HE-A5NJ 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-IA-A40U         TCGA-IA-A40X         TCGA-IA-A40Y 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-IZ-8195         TCGA-IZ-8196         TCGA-IZ-A6M9 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-J7-6720         TCGA-J7-8537         TCGA-KL-8323 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-KL-8324         TCGA-KL-8327         TCGA-KL-8328 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-KL-8331         TCGA-KL-8332         TCGA-KL-8333 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-KL-8334         TCGA-KL-8335         TCGA-KL-8336 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-KL-8338         TCGA-KL-8339         TCGA-KL-8340 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-KL-8341         TCGA-KL-8342         TCGA-KL-8343 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-KL-8344         TCGA-KL-8345         TCGA-KM-8438 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-KM-8439         TCGA-KM-8441         TCGA-KM-8442 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-KM-8639         TCGA-KN-8418         TCGA-KN-8419 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-KN-8422         TCGA-KN-8423         TCGA-KN-8424 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-KN-8426         TCGA-KN-8427         TCGA-KN-8428 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-KN-8429         TCGA-KN-8430         TCGA-KN-8431 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-KN-8432         TCGA-KN-8433         TCGA-KN-8434 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-KN-8436         TCGA-KN-8437         TCGA-KO-8404 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-KO-8405         TCGA-KO-8408         TCGA-KO-8409 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-KO-8410         TCGA-KO-8413         TCGA-KO-8415 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-KO-8416         TCGA-KO-8417         TCGA-KV-A6GD 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-KV-A6GE         TCGA-P4-A5E6         TCGA-P4-A5E7 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-P4-A5E8         TCGA-P4-A5EA         TCGA-PJ-A5Z8 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 
        TCGA-PJ-A5Z9         TCGA-Q2-A5QZ 
"KIAA1751 WILD-TYPE" "KIAA1751 WILD-TYPE" 

Clustering(23) Variable = MTOR MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MTOR MUTATED        1      1      0      0
  MTOR WILD-TYPE     20     16      9     14
D23V1, multiclass
[1] "Remove cluster labels:" "MTOR MUTATED"          
clus
  MTOR MUTATED MTOR WILD-TYPE 
             2             59 
    TCGA-A3-3311     TCGA-A3-3316     TCGA-A3-3317     TCGA-A3-3322 
"MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" 
    TCGA-A3-3323     TCGA-A3-3326     TCGA-A3-3331     TCGA-A3-3349 
"MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" 
    TCGA-A3-3362     TCGA-A3-3363     TCGA-A3-3365     TCGA-A3-3374 
"MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" 
    TCGA-A3-3380     TCGA-A3-3383     TCGA-AK-3427     TCGA-AK-3440 
"MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" 
    TCGA-AK-3443     TCGA-AK-3453     TCGA-AK-3455     TCGA-AK-3456 
"MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" 
    TCGA-AK-3465     TCGA-AL-3466     TCGA-AL-3467     TCGA-AL-3472 
"MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" 
    TCGA-AL-3473     TCGA-AS-3777     TCGA-AS-3778     TCGA-B2-3923 
"MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" 
    TCGA-B2-3924     TCGA-B2-4098     TCGA-B2-4099     TCGA-B3-3925 
"MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" 
    TCGA-B3-3926     TCGA-B3-4103     TCGA-B3-4104     TCGA-B8-4143 
"MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" 
    TCGA-B8-4148     TCGA-B8-4151     TCGA-B8-4154     TCGA-B8-4619 
"MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" 
    TCGA-B8-4620     TCGA-B9-4113     TCGA-B9-4114     TCGA-B9-4115 
"MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" 
    TCGA-B9-4116     TCGA-B9-4117     TCGA-BP-4161     TCGA-BP-4162 
"MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" 
    TCGA-BP-4163     TCGA-BP-4164     TCGA-BP-4167     TCGA-CJ-4634 
"MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" 
    TCGA-CJ-4636     TCGA-CJ-4637     TCGA-CJ-4638     TCGA-CJ-4639 
"MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" 
    TCGA-CJ-4640     TCGA-CJ-4641     TCGA-CJ-4643 
"MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MTOR MUTATED        0      1      0      1      0
  MTOR WILD-TYPE     11     16     14      9      9
D23V2, multiclass
[1] "Remove cluster labels:" "MTOR MUTATED"          
clus
  MTOR MUTATED MTOR WILD-TYPE 
             2             59 
    TCGA-A3-3311     TCGA-A3-3316     TCGA-A3-3317     TCGA-A3-3322 
"MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" 
    TCGA-A3-3323     TCGA-A3-3326     TCGA-A3-3331     TCGA-A3-3349 
"MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" 
    TCGA-A3-3362     TCGA-A3-3363     TCGA-A3-3365     TCGA-A3-3374 
"MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" 
    TCGA-A3-3380     TCGA-A3-3383     TCGA-AK-3427     TCGA-AK-3440 
"MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" 
    TCGA-AK-3443     TCGA-AK-3453     TCGA-AK-3455     TCGA-AK-3456 
"MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" 
    TCGA-AK-3465     TCGA-AL-3466     TCGA-AL-3467     TCGA-AL-3472 
"MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" 
    TCGA-AL-3473     TCGA-AS-3777     TCGA-AS-3778     TCGA-B2-3923 
"MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" 
    TCGA-B2-3924     TCGA-B2-4098     TCGA-B2-4099     TCGA-B3-3925 
"MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" 
    TCGA-B3-3926     TCGA-B3-4103     TCGA-B3-4104     TCGA-B8-4143 
"MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" 
    TCGA-B8-4148     TCGA-B8-4151     TCGA-B8-4154     TCGA-B8-4619 
"MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" 
    TCGA-B8-4620     TCGA-B9-4113     TCGA-B9-4114     TCGA-B9-4115 
"MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" 
    TCGA-B9-4116     TCGA-B9-4117     TCGA-BP-4161     TCGA-BP-4162 
"MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" 
    TCGA-BP-4163     TCGA-BP-4164     TCGA-BP-4167     TCGA-CJ-4634 
"MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" 
    TCGA-CJ-4636     TCGA-CJ-4637     TCGA-CJ-4638     TCGA-CJ-4639 
"MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" 
    TCGA-CJ-4640     TCGA-CJ-4641     TCGA-CJ-4643 
"MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MTOR MUTATED        1     11     20
  MTOR WILD-TYPE    179    231    223
D23V3, multiclass
        clus
vv       MTOR MUTATED MTOR WILD-TYPE
  CLUS_1            1            179
  CLUS_2           11            231
  CLUS_3           20            223
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MTOR MUTATED        5     21      1
  MTOR WILD-TYPE     98    234    118
D23V4, multiclass
        clus
vv       MTOR MUTATED MTOR WILD-TYPE
  CLUS_1            5             98
  CLUS_2           21            234
  CLUS_3            1            118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MTOR MUTATED        3     12     14      3
  MTOR WILD-TYPE     95    162    231    146
D23V5, multiclass
        clus
vv       MTOR MUTATED MTOR WILD-TYPE
  CLUS_1            3             95
  CLUS_2           12            162
  CLUS_3           14            231
  CLUS_4            3            146
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MTOR MUTATED        2      4      7      9      9      1
  MTOR WILD-TYPE     78     86    170    129     81     90
D23V6, multiclass
        clus
vv       MTOR MUTATED MTOR WILD-TYPE
  CLUS_1            2             78
  CLUS_2            4             86
  CLUS_3            7            170
  CLUS_4            9            129
  CLUS_5            9             81
  CLUS_6            1             90
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MTOR MUTATED        2      9     21
  MTOR WILD-TYPE    212    139    275
D23V7, multiclass
        clus
vv       MTOR MUTATED MTOR WILD-TYPE
  CLUS_1            2            212
  CLUS_2            9            139
  CLUS_3           21            275
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MTOR MUTATED        0     32      0
  MTOR WILD-TYPE     72    444    110
D23V8, multiclass
        clus
vv       MTOR MUTATED MTOR WILD-TYPE
  CLUS_1            0             72
  CLUS_2           32            444
  CLUS_3            0            110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MTOR MUTATED        1      2      2      6
  MTOR WILD-TYPE     75     58     40     93
D23V9, multiclass
        clus
vv       MTOR MUTATED MTOR WILD-TYPE
  CLUS_1            1             75
  CLUS_2            2             58
  CLUS_3            2             40
  CLUS_4            6             93
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MTOR MUTATED        0      0      4      7      0
  MTOR WILD-TYPE     26     43     58     93     46
D23V10, multiclass
        clus
vv       MTOR MUTATED MTOR WILD-TYPE
  CLUS_1            0             26
  CLUS_2            0             43
  CLUS_3            4             58
  CLUS_4            7             93
  CLUS_5            0             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = RIMBP3 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RIMBP3 MUTATED        1      0      0      0
  RIMBP3 WILD-TYPE     20     17      9     14
D24V1, multiclass
[1] "Remove cluster labels:" "RIMBP3 MUTATED"        
clus
  RIMBP3 MUTATED RIMBP3 WILD-TYPE 
               1               60 
      TCGA-A3-3311       TCGA-A3-3316       TCGA-A3-3317       TCGA-A3-3322 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-A3-3323       TCGA-A3-3326       TCGA-A3-3331       TCGA-A3-3347 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-A3-3349       TCGA-A3-3362       TCGA-A3-3363       TCGA-A3-3365 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-A3-3374       TCGA-A3-3380       TCGA-A3-3383       TCGA-AK-3427 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AK-3440       TCGA-AK-3443       TCGA-AK-3453       TCGA-AK-3455 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AK-3456       TCGA-AK-3465       TCGA-AL-3466       TCGA-AL-3467 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AL-3472       TCGA-AL-3473       TCGA-AS-3777       TCGA-AS-3778 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-B2-3923       TCGA-B2-3924       TCGA-B2-4098       TCGA-B2-4099 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-B3-3925       TCGA-B3-3926       TCGA-B3-4103       TCGA-B3-4104 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-B8-4143       TCGA-B8-4148       TCGA-B8-4151       TCGA-B8-4154 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-B8-4619       TCGA-B8-4620       TCGA-B9-4113       TCGA-B9-4114 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-B9-4115       TCGA-B9-4116       TCGA-B9-4117       TCGA-BP-4161 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-BP-4162       TCGA-BP-4163       TCGA-BP-4167       TCGA-CJ-4634 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-CJ-4636       TCGA-CJ-4637       TCGA-CJ-4638       TCGA-CJ-4639 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-CJ-4640       TCGA-CJ-4641       TCGA-CJ-4643       TCGA-CJ-4644 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RIMBP3 MUTATED        0      0      0      1      0
  RIMBP3 WILD-TYPE     11     17     14      9      9
D24V2, multiclass
[1] "Remove cluster labels:" "RIMBP3 MUTATED"        
clus
  RIMBP3 MUTATED RIMBP3 WILD-TYPE 
               1               60 
      TCGA-A3-3311       TCGA-A3-3316       TCGA-A3-3317       TCGA-A3-3322 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-A3-3323       TCGA-A3-3326       TCGA-A3-3331       TCGA-A3-3347 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-A3-3349       TCGA-A3-3362       TCGA-A3-3363       TCGA-A3-3365 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-A3-3374       TCGA-A3-3380       TCGA-A3-3383       TCGA-AK-3427 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AK-3440       TCGA-AK-3443       TCGA-AK-3453       TCGA-AK-3455 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AK-3456       TCGA-AK-3465       TCGA-AL-3466       TCGA-AL-3467 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AL-3472       TCGA-AL-3473       TCGA-AS-3777       TCGA-AS-3778 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-B2-3923       TCGA-B2-3924       TCGA-B2-4098       TCGA-B2-4099 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-B3-3925       TCGA-B3-3926       TCGA-B3-4103       TCGA-B3-4104 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-B8-4143       TCGA-B8-4148       TCGA-B8-4151       TCGA-B8-4154 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-B8-4619       TCGA-B8-4620       TCGA-B9-4113       TCGA-B9-4114 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-B9-4115       TCGA-B9-4116       TCGA-B9-4117       TCGA-BP-4161 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-BP-4162       TCGA-BP-4163       TCGA-BP-4167       TCGA-CJ-4634 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-CJ-4636       TCGA-CJ-4637       TCGA-CJ-4638       TCGA-CJ-4639 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-CJ-4640       TCGA-CJ-4641       TCGA-CJ-4643       TCGA-CJ-4644 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RIMBP3 MUTATED        0      2      3
  RIMBP3 WILD-TYPE    180    240    240
D24V3, multiclass
        clus
vv       RIMBP3 MUTATED RIMBP3 WILD-TYPE
  CLUS_1              0              180
  CLUS_2              2              240
  CLUS_3              3              240
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RIMBP3 MUTATED        2      1      0
  RIMBP3 WILD-TYPE    101    254    119
D24V4, multiclass
        clus
vv       RIMBP3 MUTATED RIMBP3 WILD-TYPE
  CLUS_1              2              101
  CLUS_2              1              254
  CLUS_3              0              119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RIMBP3 MUTATED        1      1      3      0
  RIMBP3 WILD-TYPE     97    173    242    149
D24V5, multiclass
        clus
vv       RIMBP3 MUTATED RIMBP3 WILD-TYPE
  CLUS_1              1               97
  CLUS_2              1              173
  CLUS_3              3              242
  CLUS_4              0              149
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RIMBP3 MUTATED        1      1      0      0      3      0
  RIMBP3 WILD-TYPE     79     89    177    138     87     91
D24V6, multiclass
        clus
vv       RIMBP3 MUTATED RIMBP3 WILD-TYPE
  CLUS_1              1               79
  CLUS_2              1               89
  CLUS_3              0              177
  CLUS_4              0              138
  CLUS_5              3               87
  CLUS_6              0               91
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RIMBP3 MUTATED        1      2      1
  RIMBP3 WILD-TYPE    213    146    295
D24V7, multiclass
        clus
vv       RIMBP3 MUTATED RIMBP3 WILD-TYPE
  CLUS_1              1              213
  CLUS_2              2              146
  CLUS_3              1              295
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RIMBP3 MUTATED        1      3      0
  RIMBP3 WILD-TYPE     71    473    110
D24V8, multiclass
        clus
vv       RIMBP3 MUTATED RIMBP3 WILD-TYPE
  CLUS_1              1               71
  CLUS_2              3              473
  CLUS_3              0              110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RIMBP3 MUTATED        0      1      1      0
  RIMBP3 WILD-TYPE     76     59     41     99
D24V9, multiclass
[1] "Remove cluster labels:" "RIMBP3 MUTATED"        
clus
  RIMBP3 MUTATED RIMBP3 WILD-TYPE 
               2              275 
      TCGA-A3-3317       TCGA-A3-3358       TCGA-A3-3387       TCGA-A4-7286 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-A4-7287       TCGA-A4-7288       TCGA-A4-7585       TCGA-A4-7734 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-A4-7828       TCGA-A4-7915       TCGA-A4-7996       TCGA-A4-7997 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-A4-8098       TCGA-A4-8310       TCGA-A4-8312       TCGA-A4-8515 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-A4-8517       TCGA-A4-8518       TCGA-A4-8630       TCGA-A4-A57E 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-A4-A5XZ       TCGA-A4-A5Y0       TCGA-A4-A5Y1       TCGA-AK-3440 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AK-3458       TCGA-AK-3465       TCGA-AL-3466       TCGA-AL-3472 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AL-3473       TCGA-AL-7173       TCGA-AT-A5NU       TCGA-B0-4700 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-B0-4706       TCGA-B0-4710       TCGA-B0-4712       TCGA-B0-4810 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-B0-4811       TCGA-B0-4836       TCGA-B0-4837       TCGA-B0-4852 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-B0-5080       TCGA-B0-5085       TCGA-B0-5088       TCGA-B0-5399 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-B0-5691       TCGA-B0-5692       TCGA-B0-5693       TCGA-B0-5694 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-B0-5695       TCGA-B0-5696       TCGA-B0-5699       TCGA-B0-5702 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-B0-5705       TCGA-B0-5709       TCGA-B1-5398       TCGA-B1-A47N 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-B1-A654       TCGA-B1-A656       TCGA-B1-A657       TCGA-B2-3923 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-B2-3924       TCGA-B2-5633       TCGA-B2-5635       TCGA-B3-3925 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-B3-4104       TCGA-B3-8121       TCGA-B4-5377       TCGA-B4-5836 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-B8-4621       TCGA-B8-5545       TCGA-B8-5550       TCGA-B8-5551 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-B8-5552       TCGA-B8-5553       TCGA-B9-4115       TCGA-B9-4117 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-B9-5156       TCGA-B9-A44B       TCGA-B9-A5W9       TCGA-B9-A69E 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-BP-4173       TCGA-BP-4340       TCGA-BP-4761       TCGA-BP-4770 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-BP-4787       TCGA-BP-4789       TCGA-BP-4790       TCGA-BP-4804 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-BP-4807       TCGA-BP-4961       TCGA-BP-4967       TCGA-BP-4968 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-BP-4970       TCGA-BP-4974       TCGA-BP-4976       TCGA-BP-4981 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-BP-4982       TCGA-BP-4985       TCGA-BP-4988       TCGA-BP-4989 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-BP-4992       TCGA-BP-4995       TCGA-BP-4998       TCGA-BP-5001 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-BP-5008       TCGA-BP-5009       TCGA-BQ-5876       TCGA-BQ-5877 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-BQ-5878       TCGA-BQ-5879       TCGA-BQ-5880       TCGA-BQ-5881 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-BQ-5882       TCGA-BQ-5883       TCGA-BQ-5884       TCGA-BQ-5886 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-BQ-5887       TCGA-BQ-5888       TCGA-BQ-5889       TCGA-BQ-5890 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-BQ-5891       TCGA-BQ-5892       TCGA-BQ-5893       TCGA-BQ-5894 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-BQ-7044       TCGA-BQ-7045       TCGA-BQ-7046       TCGA-BQ-7048 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-BQ-7050       TCGA-BQ-7051       TCGA-BQ-7053       TCGA-BQ-7055 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-BQ-7058       TCGA-BQ-7059       TCGA-BQ-7060       TCGA-BQ-7061 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-BQ-7062       TCGA-CJ-4870       TCGA-CJ-4875       TCGA-CJ-4876 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-CJ-4878       TCGA-CJ-4881       TCGA-CJ-4887       TCGA-CJ-4889 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-CJ-4890       TCGA-CJ-4895       TCGA-CJ-4900       TCGA-CJ-5671 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-CJ-5675       TCGA-CJ-5676       TCGA-CJ-5681       TCGA-CJ-5683 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-CJ-5686       TCGA-CJ-6031       TCGA-CJ-6032       TCGA-CW-5585 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-CW-5589       TCGA-CW-6087       TCGA-CZ-4854       TCGA-CZ-4857 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-CZ-4858       TCGA-CZ-5453       TCGA-CZ-5454       TCGA-CZ-5455 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-CZ-5457       TCGA-CZ-5459       TCGA-CZ-5462       TCGA-CZ-5463 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-CZ-5466       TCGA-CZ-5467       TCGA-CZ-5469       TCGA-CZ-5470 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-CZ-5989       TCGA-DV-5565       TCGA-DV-5566       TCGA-DV-5569 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-DW-5560       TCGA-DW-5561       TCGA-DW-7834       TCGA-DW-7837 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-DW-7838       TCGA-DW-7839       TCGA-DW-7840       TCGA-DW-7842 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-DZ-6131       TCGA-DZ-6132       TCGA-DZ-6133       TCGA-DZ-6134 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-DZ-6135       TCGA-EU-5904       TCGA-EV-5901       TCGA-EV-5902 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-EV-5903       TCGA-F9-A4JJ       TCGA-G7-6789       TCGA-G7-6790 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-G7-6792       TCGA-G7-6793       TCGA-G7-6795       TCGA-G7-6796 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-G7-7501       TCGA-G7-7502       TCGA-G7-A4TM       TCGA-GL-6846 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-GL-7773       TCGA-GL-7966       TCGA-GL-8500       TCGA-GL-A4EM 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-GL-A59T       TCGA-HE-7128       TCGA-HE-7130       TCGA-HE-A5NJ 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-IA-A40U       TCGA-IA-A40X       TCGA-IA-A40Y       TCGA-IZ-8195 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-IZ-8196       TCGA-IZ-A6M9       TCGA-J7-6720       TCGA-J7-8537 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-KL-8323       TCGA-KL-8324       TCGA-KL-8327       TCGA-KL-8328 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-KL-8331       TCGA-KL-8332       TCGA-KL-8333       TCGA-KL-8334 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-KL-8335       TCGA-KL-8336       TCGA-KL-8338       TCGA-KL-8339 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-KL-8340       TCGA-KL-8341       TCGA-KL-8342       TCGA-KL-8343 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-KL-8344       TCGA-KL-8345       TCGA-KM-8438       TCGA-KM-8439 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-KM-8441       TCGA-KM-8442       TCGA-KM-8639       TCGA-KN-8418 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-KN-8419       TCGA-KN-8422       TCGA-KN-8423       TCGA-KN-8424 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-KN-8426       TCGA-KN-8427       TCGA-KN-8428       TCGA-KN-8429 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-KN-8430       TCGA-KN-8431       TCGA-KN-8432       TCGA-KN-8433 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-KN-8434       TCGA-KN-8436       TCGA-KN-8437       TCGA-KO-8405 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-KO-8408       TCGA-KO-8410       TCGA-KO-8413       TCGA-KO-8415 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-KO-8416       TCGA-KO-8417       TCGA-KV-A6GD       TCGA-KV-A6GE 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-P4-A5E6       TCGA-P4-A5E7       TCGA-P4-A5E8       TCGA-P4-A5EA 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-PJ-A5Z8       TCGA-PJ-A5Z9       TCGA-Q2-A5QZ 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RIMBP3 MUTATED        0      0      1      0      1
  RIMBP3 WILD-TYPE     26     43     61    100     45
D24V10, multiclass
[1] "Remove cluster labels:" "RIMBP3 MUTATED"        
clus
  RIMBP3 MUTATED RIMBP3 WILD-TYPE 
               2              275 
      TCGA-A3-3317       TCGA-A3-3358       TCGA-A3-3387       TCGA-A4-7286 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-A4-7287       TCGA-A4-7288       TCGA-A4-7585       TCGA-A4-7734 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-A4-7828       TCGA-A4-7915       TCGA-A4-7996       TCGA-A4-7997 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-A4-8098       TCGA-A4-8310       TCGA-A4-8312       TCGA-A4-8515 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-A4-8517       TCGA-A4-8518       TCGA-A4-8630       TCGA-A4-A57E 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-A4-A5XZ       TCGA-A4-A5Y0       TCGA-A4-A5Y1       TCGA-AK-3440 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AK-3458       TCGA-AK-3465       TCGA-AL-3466       TCGA-AL-3472 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AL-3473       TCGA-AL-7173       TCGA-AT-A5NU       TCGA-B0-4700 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-B0-4706       TCGA-B0-4710       TCGA-B0-4712       TCGA-B0-4810 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-B0-4811       TCGA-B0-4836       TCGA-B0-4837       TCGA-B0-4852 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-B0-5080       TCGA-B0-5085       TCGA-B0-5088       TCGA-B0-5399 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-B0-5691       TCGA-B0-5692       TCGA-B0-5693       TCGA-B0-5694 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-B0-5695       TCGA-B0-5696       TCGA-B0-5699       TCGA-B0-5702 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-B0-5705       TCGA-B0-5709       TCGA-B1-5398       TCGA-B1-A47N 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-B1-A654       TCGA-B1-A656       TCGA-B1-A657       TCGA-B2-3923 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-B2-3924       TCGA-B2-5633       TCGA-B2-5635       TCGA-B3-3925 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-B3-4104       TCGA-B3-8121       TCGA-B4-5377       TCGA-B4-5836 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-B8-4621       TCGA-B8-5545       TCGA-B8-5550       TCGA-B8-5551 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-B8-5552       TCGA-B8-5553       TCGA-B9-4115       TCGA-B9-4117 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-B9-5156       TCGA-B9-A44B       TCGA-B9-A5W9       TCGA-B9-A69E 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-BP-4173       TCGA-BP-4340       TCGA-BP-4761       TCGA-BP-4770 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-BP-4787       TCGA-BP-4789       TCGA-BP-4790       TCGA-BP-4804 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-BP-4807       TCGA-BP-4961       TCGA-BP-4967       TCGA-BP-4968 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-BP-4970       TCGA-BP-4974       TCGA-BP-4976       TCGA-BP-4981 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-BP-4982       TCGA-BP-4985       TCGA-BP-4988       TCGA-BP-4989 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-BP-4992       TCGA-BP-4995       TCGA-BP-4998       TCGA-BP-5001 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-BP-5008       TCGA-BP-5009       TCGA-BQ-5876       TCGA-BQ-5877 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-BQ-5878       TCGA-BQ-5879       TCGA-BQ-5880       TCGA-BQ-5881 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-BQ-5882       TCGA-BQ-5883       TCGA-BQ-5884       TCGA-BQ-5886 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-BQ-5887       TCGA-BQ-5888       TCGA-BQ-5889       TCGA-BQ-5890 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-BQ-5891       TCGA-BQ-5892       TCGA-BQ-5893       TCGA-BQ-5894 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-BQ-7044       TCGA-BQ-7045       TCGA-BQ-7046       TCGA-BQ-7048 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-BQ-7050       TCGA-BQ-7051       TCGA-BQ-7053       TCGA-BQ-7055 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-BQ-7058       TCGA-BQ-7059       TCGA-BQ-7060       TCGA-BQ-7061 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-BQ-7062       TCGA-CJ-4870       TCGA-CJ-4875       TCGA-CJ-4876 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-CJ-4878       TCGA-CJ-4881       TCGA-CJ-4887       TCGA-CJ-4889 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-CJ-4890       TCGA-CJ-4895       TCGA-CJ-4900       TCGA-CJ-5671 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-CJ-5675       TCGA-CJ-5676       TCGA-CJ-5681       TCGA-CJ-5683 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-CJ-5686       TCGA-CJ-6031       TCGA-CJ-6032       TCGA-CW-5585 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-CW-5589       TCGA-CW-6087       TCGA-CZ-4854       TCGA-CZ-4857 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-CZ-4858       TCGA-CZ-5453       TCGA-CZ-5454       TCGA-CZ-5455 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-CZ-5457       TCGA-CZ-5459       TCGA-CZ-5462       TCGA-CZ-5463 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-CZ-5466       TCGA-CZ-5467       TCGA-CZ-5469       TCGA-CZ-5470 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-CZ-5989       TCGA-DV-5565       TCGA-DV-5566       TCGA-DV-5569 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-DW-5560       TCGA-DW-5561       TCGA-DW-7834       TCGA-DW-7837 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-DW-7838       TCGA-DW-7839       TCGA-DW-7840       TCGA-DW-7842 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-DZ-6131       TCGA-DZ-6132       TCGA-DZ-6133       TCGA-DZ-6134 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-DZ-6135       TCGA-EU-5904       TCGA-EV-5901       TCGA-EV-5902 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-EV-5903       TCGA-F9-A4JJ       TCGA-G7-6789       TCGA-G7-6790 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-G7-6792       TCGA-G7-6793       TCGA-G7-6795       TCGA-G7-6796 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-G7-7501       TCGA-G7-7502       TCGA-G7-A4TM       TCGA-GL-6846 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-GL-7773       TCGA-GL-7966       TCGA-GL-8500       TCGA-GL-A4EM 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-GL-A59T       TCGA-HE-7128       TCGA-HE-7130       TCGA-HE-A5NJ 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-IA-A40U       TCGA-IA-A40X       TCGA-IA-A40Y       TCGA-IZ-8195 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-IZ-8196       TCGA-IZ-A6M9       TCGA-J7-6720       TCGA-J7-8537 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-KL-8323       TCGA-KL-8324       TCGA-KL-8327       TCGA-KL-8328 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-KL-8331       TCGA-KL-8332       TCGA-KL-8333       TCGA-KL-8334 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-KL-8335       TCGA-KL-8336       TCGA-KL-8338       TCGA-KL-8339 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-KL-8340       TCGA-KL-8341       TCGA-KL-8342       TCGA-KL-8343 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-KL-8344       TCGA-KL-8345       TCGA-KM-8438       TCGA-KM-8439 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-KM-8441       TCGA-KM-8442       TCGA-KM-8639       TCGA-KN-8418 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-KN-8419       TCGA-KN-8422       TCGA-KN-8423       TCGA-KN-8424 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-KN-8426       TCGA-KN-8427       TCGA-KN-8428       TCGA-KN-8429 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-KN-8430       TCGA-KN-8431       TCGA-KN-8432       TCGA-KN-8433 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-KN-8434       TCGA-KN-8436       TCGA-KN-8437       TCGA-KO-8405 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-KO-8408       TCGA-KO-8410       TCGA-KO-8413       TCGA-KO-8415 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-KO-8416       TCGA-KO-8417       TCGA-KV-A6GD       TCGA-KV-A6GE 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-P4-A5E6       TCGA-P4-A5E7       TCGA-P4-A5E8       TCGA-P4-A5EA 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-PJ-A5Z8       TCGA-PJ-A5Z9       TCGA-Q2-A5QZ 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 

Clustering(25) Variable = ZNF598 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF598 MUTATED        0      1      0      0
  ZNF598 WILD-TYPE     21     16      9     14
D25V1, multiclass
[1] "Remove cluster labels:" "ZNF598 MUTATED"        
clus
  ZNF598 MUTATED ZNF598 WILD-TYPE 
               1               60 
      TCGA-A3-3311       TCGA-A3-3316       TCGA-A3-3317       TCGA-A3-3322 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-A3-3323       TCGA-A3-3326       TCGA-A3-3331       TCGA-A3-3347 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-A3-3349       TCGA-A3-3362       TCGA-A3-3363       TCGA-A3-3365 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-A3-3374       TCGA-A3-3380       TCGA-A3-3383       TCGA-AK-3427 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-AK-3440       TCGA-AK-3443       TCGA-AK-3453       TCGA-AK-3455 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-AK-3456       TCGA-AK-3465       TCGA-AL-3466       TCGA-AL-3467 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-AL-3472       TCGA-AS-3777       TCGA-AS-3778       TCGA-B2-3923 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-B2-3924       TCGA-B2-4098       TCGA-B2-4099       TCGA-B3-3925 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-B3-3926       TCGA-B3-4103       TCGA-B3-4104       TCGA-B8-4143 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-B8-4148       TCGA-B8-4151       TCGA-B8-4154       TCGA-B8-4619 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-B8-4620       TCGA-B9-4113       TCGA-B9-4114       TCGA-B9-4115 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-B9-4116       TCGA-B9-4117       TCGA-BP-4161       TCGA-BP-4162 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-BP-4163       TCGA-BP-4164       TCGA-BP-4167       TCGA-CJ-4634 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-CJ-4636       TCGA-CJ-4637       TCGA-CJ-4638       TCGA-CJ-4639 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-CJ-4640       TCGA-CJ-4641       TCGA-CJ-4643       TCGA-CJ-4644 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF598 MUTATED        0      1      0      0      0
  ZNF598 WILD-TYPE     11     16     14     10      9
D25V2, multiclass
[1] "Remove cluster labels:" "ZNF598 MUTATED"        
clus
  ZNF598 MUTATED ZNF598 WILD-TYPE 
               1               60 
      TCGA-A3-3311       TCGA-A3-3316       TCGA-A3-3317       TCGA-A3-3322 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-A3-3323       TCGA-A3-3326       TCGA-A3-3331       TCGA-A3-3347 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-A3-3349       TCGA-A3-3362       TCGA-A3-3363       TCGA-A3-3365 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-A3-3374       TCGA-A3-3380       TCGA-A3-3383       TCGA-AK-3427 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-AK-3440       TCGA-AK-3443       TCGA-AK-3453       TCGA-AK-3455 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-AK-3456       TCGA-AK-3465       TCGA-AL-3466       TCGA-AL-3467 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-AL-3472       TCGA-AS-3777       TCGA-AS-3778       TCGA-B2-3923 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-B2-3924       TCGA-B2-4098       TCGA-B2-4099       TCGA-B3-3925 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-B3-3926       TCGA-B3-4103       TCGA-B3-4104       TCGA-B8-4143 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-B8-4148       TCGA-B8-4151       TCGA-B8-4154       TCGA-B8-4619 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-B8-4620       TCGA-B9-4113       TCGA-B9-4114       TCGA-B9-4115 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-B9-4116       TCGA-B9-4117       TCGA-BP-4161       TCGA-BP-4162 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-BP-4163       TCGA-BP-4164       TCGA-BP-4167       TCGA-CJ-4634 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-CJ-4636       TCGA-CJ-4637       TCGA-CJ-4638       TCGA-CJ-4639 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
      TCGA-CJ-4640       TCGA-CJ-4641       TCGA-CJ-4643       TCGA-CJ-4644 
"ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" "ZNF598 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF598 MUTATED        7      2      2
  ZNF598 WILD-TYPE    173    240    241
D25V3, multiclass
        clus
vv       ZNF598 MUTATED ZNF598 WILD-TYPE
  CLUS_1              7              173
  CLUS_2              2              240
  CLUS_3              2              241
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF598 MUTATED        2      1      7
  ZNF598 WILD-TYPE    101    254    112
D25V4, multiclass
        clus
vv       ZNF598 MUTATED ZNF598 WILD-TYPE
  CLUS_1              2              101
  CLUS_2              1              254
  CLUS_3              7              112
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF598 MUTATED        1      1      1      8
  ZNF598 WILD-TYPE     97    173    244    141
D25V5, multiclass
        clus
vv       ZNF598 MUTATED ZNF598 WILD-TYPE
  CLUS_1              1               97
  CLUS_2              1              173
  CLUS_3              1              244
  CLUS_4              8              141
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZNF598 MUTATED        1      3      0      1      0      6
  ZNF598 WILD-TYPE     79     87    177    137     90     85
D25V6, multiclass
        clus
vv       ZNF598 MUTATED ZNF598 WILD-TYPE
  CLUS_1              1               79
  CLUS_2              3               87
  CLUS_3              0              177
  CLUS_4              1              137
  CLUS_5              0               90
  CLUS_6              6               85
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF598 MUTATED        8      3      0
  ZNF598 WILD-TYPE    206    145    296
D25V7, multiclass
        clus
vv       ZNF598 MUTATED ZNF598 WILD-TYPE
  CLUS_1              8              206
  CLUS_2              3              145
  CLUS_3              0              296
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF598 MUTATED        1      6      4
  ZNF598 WILD-TYPE     71    470    106
D25V8, multiclass
        clus
vv       ZNF598 MUTATED ZNF598 WILD-TYPE
  CLUS_1              1               71
  CLUS_2              6              470
  CLUS_3              4              106
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF598 MUTATED        3      3      4      1
  ZNF598 WILD-TYPE     73     57     38     98
D25V9, multiclass
        clus
vv       ZNF598 MUTATED ZNF598 WILD-TYPE
  CLUS_1              3               73
  CLUS_2              3               57
  CLUS_3              4               38
  CLUS_4              1               98
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF598 MUTATED        5      0      4      1      1
  ZNF598 WILD-TYPE     21     43     58     99     45
D25V10, multiclass
        clus
vv       ZNF598 MUTATED ZNF598 WILD-TYPE
  CLUS_1              5               21
  CLUS_2              0               43
  CLUS_3              4               58
  CLUS_4              1               99
  CLUS_5              1               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = GPR50 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR50 MUTATED        0      0      0      0
  GPR50 WILD-TYPE     21     17      9     14
D26V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPR50 MUTATED        0      0      0      0      0
  GPR50 WILD-TYPE     11     17     14     10      9
D26V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GPR50 MUTATED        1      2      2
  GPR50 WILD-TYPE    179    240    241
D26V3, multiclass
        clus
vv       GPR50 MUTATED GPR50 WILD-TYPE
  CLUS_1             1             179
  CLUS_2             2             240
  CLUS_3             2             241
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GPR50 MUTATED        2      2      1
  GPR50 WILD-TYPE    101    253    118
D26V4, multiclass
        clus
vv       GPR50 MUTATED GPR50 WILD-TYPE
  CLUS_1             2             101
  CLUS_2             2             253
  CLUS_3             1             118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR50 MUTATED        2      1      1      1
  GPR50 WILD-TYPE     96    173    244    148
D26V5, multiclass
        clus
vv       GPR50 MUTATED GPR50 WILD-TYPE
  CLUS_1             2              96
  CLUS_2             1             173
  CLUS_3             1             244
  CLUS_4             1             148
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GPR50 MUTATED        1      1      0      1      1      1
  GPR50 WILD-TYPE     79     89    177    137     89     90
D26V6, multiclass
        clus
vv       GPR50 MUTATED GPR50 WILD-TYPE
  CLUS_1             1              79
  CLUS_2             1              89
  CLUS_3             0             177
  CLUS_4             1             137
  CLUS_5             1              89
  CLUS_6             1              90
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GPR50 MUTATED        1      1      3
  GPR50 WILD-TYPE    213    147    293
D26V7, multiclass
        clus
vv       GPR50 MUTATED GPR50 WILD-TYPE
  CLUS_1             1             213
  CLUS_2             1             147
  CLUS_3             3             293
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GPR50 MUTATED        1      3      1
  GPR50 WILD-TYPE     71    473    109
D26V8, multiclass
        clus
vv       GPR50 MUTATED GPR50 WILD-TYPE
  CLUS_1             1              71
  CLUS_2             3             473
  CLUS_3             1             109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR50 MUTATED        1      1      0      0
  GPR50 WILD-TYPE     75     59     42     99
D26V9, multiclass
[1] "Remove cluster labels:" "GPR50 MUTATED"         
clus
  GPR50 MUTATED GPR50 WILD-TYPE 
              2             275 
     TCGA-A3-3317      TCGA-A3-3358      TCGA-A3-3387      TCGA-A4-7286 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-A4-7287      TCGA-A4-7288      TCGA-A4-7585      TCGA-A4-7734 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-A4-7828      TCGA-A4-7915      TCGA-A4-7996      TCGA-A4-7997 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-A4-8098      TCGA-A4-8310      TCGA-A4-8312      TCGA-A4-8515 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-A4-8517      TCGA-A4-8518      TCGA-A4-8630      TCGA-A4-A57E 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-A4-A5XZ      TCGA-A4-A5Y0      TCGA-A4-A5Y1      TCGA-AK-3440 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-AK-3458      TCGA-AK-3465      TCGA-AL-3466      TCGA-AL-3472 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-AL-3473      TCGA-AL-7173      TCGA-AT-A5NU      TCGA-B0-4700 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-B0-4706      TCGA-B0-4710      TCGA-B0-4712      TCGA-B0-4810 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-B0-4811      TCGA-B0-4836      TCGA-B0-4837      TCGA-B0-4852 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-B0-5080      TCGA-B0-5085      TCGA-B0-5088      TCGA-B0-5399 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-B0-5691      TCGA-B0-5692      TCGA-B0-5693      TCGA-B0-5694 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-B0-5695      TCGA-B0-5696      TCGA-B0-5699      TCGA-B0-5702 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-B0-5705      TCGA-B0-5709      TCGA-B1-5398      TCGA-B1-A47N 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-B1-A654      TCGA-B1-A656      TCGA-B1-A657      TCGA-B2-3923 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-B2-3924      TCGA-B2-5633      TCGA-B2-5635      TCGA-B3-3925 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-B3-4104      TCGA-B3-8121      TCGA-B4-5377      TCGA-B4-5836 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-B8-4621      TCGA-B8-5545      TCGA-B8-5550      TCGA-B8-5551 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-B8-5552      TCGA-B8-5553      TCGA-B9-4115      TCGA-B9-4117 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-B9-5156      TCGA-B9-A44B      TCGA-B9-A5W9      TCGA-B9-A69E 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-BP-4173      TCGA-BP-4340      TCGA-BP-4761      TCGA-BP-4770 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-BP-4787      TCGA-BP-4789      TCGA-BP-4790      TCGA-BP-4804 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-BP-4807      TCGA-BP-4961      TCGA-BP-4967      TCGA-BP-4968 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-BP-4970      TCGA-BP-4974      TCGA-BP-4976      TCGA-BP-4981 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-BP-4982      TCGA-BP-4985      TCGA-BP-4988      TCGA-BP-4989 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-BP-4992      TCGA-BP-4995      TCGA-BP-4998      TCGA-BP-5001 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-BP-5008      TCGA-BP-5009      TCGA-BQ-5876      TCGA-BQ-5877 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-BQ-5878      TCGA-BQ-5879      TCGA-BQ-5880      TCGA-BQ-5881 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-BQ-5882      TCGA-BQ-5883      TCGA-BQ-5884      TCGA-BQ-5886 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-BQ-5887      TCGA-BQ-5888      TCGA-BQ-5889      TCGA-BQ-5890 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-BQ-5891      TCGA-BQ-5892      TCGA-BQ-5893      TCGA-BQ-5894 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-BQ-7044      TCGA-BQ-7045      TCGA-BQ-7046      TCGA-BQ-7048 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-BQ-7050      TCGA-BQ-7051      TCGA-BQ-7053      TCGA-BQ-7055 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-BQ-7058      TCGA-BQ-7059      TCGA-BQ-7060      TCGA-BQ-7061 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-BQ-7062      TCGA-CJ-4870      TCGA-CJ-4875      TCGA-CJ-4876 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-CJ-4878      TCGA-CJ-4881      TCGA-CJ-4887      TCGA-CJ-4889 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-CJ-4890      TCGA-CJ-4895      TCGA-CJ-4900      TCGA-CJ-5671 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-CJ-5675      TCGA-CJ-5676      TCGA-CJ-5681      TCGA-CJ-5683 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-CJ-5686      TCGA-CJ-6031      TCGA-CJ-6032      TCGA-CW-5585 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-CW-5589      TCGA-CW-6087      TCGA-CZ-4854      TCGA-CZ-4857 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-CZ-4858      TCGA-CZ-5453      TCGA-CZ-5454      TCGA-CZ-5455 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-CZ-5457      TCGA-CZ-5459      TCGA-CZ-5462      TCGA-CZ-5463 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-CZ-5466      TCGA-CZ-5467      TCGA-CZ-5469      TCGA-CZ-5470 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-CZ-5989      TCGA-DV-5565      TCGA-DV-5566      TCGA-DV-5569 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-DW-5560      TCGA-DW-5561      TCGA-DW-7834      TCGA-DW-7837 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-DW-7838      TCGA-DW-7839      TCGA-DW-7840      TCGA-DW-7842 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-DZ-6131      TCGA-DZ-6132      TCGA-DZ-6133      TCGA-DZ-6134 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-DZ-6135      TCGA-EU-5904      TCGA-EV-5901      TCGA-EV-5902 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-EV-5903      TCGA-F9-A4JJ      TCGA-G7-6789      TCGA-G7-6790 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-G7-6792      TCGA-G7-6793      TCGA-G7-6795      TCGA-G7-6796 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-G7-7501      TCGA-G7-7502      TCGA-G7-A4TM      TCGA-GL-6846 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-GL-7773      TCGA-GL-7966      TCGA-GL-8500      TCGA-GL-A4EM 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-GL-A59T      TCGA-HE-7128      TCGA-HE-7130      TCGA-HE-A5NJ 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-IA-A40U      TCGA-IA-A40X      TCGA-IA-A40Y      TCGA-IZ-8195 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-IZ-8196      TCGA-IZ-A6M9      TCGA-J7-6720      TCGA-J7-8537 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-KL-8323      TCGA-KL-8324      TCGA-KL-8327      TCGA-KL-8328 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-KL-8331      TCGA-KL-8332      TCGA-KL-8333      TCGA-KL-8334 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-KL-8335      TCGA-KL-8336      TCGA-KL-8338      TCGA-KL-8339 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-KL-8340      TCGA-KL-8341      TCGA-KL-8342      TCGA-KL-8343 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-KL-8344      TCGA-KL-8345      TCGA-KM-8438      TCGA-KM-8439 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-KM-8441      TCGA-KM-8442      TCGA-KM-8639      TCGA-KN-8418 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-KN-8419      TCGA-KN-8422      TCGA-KN-8423      TCGA-KN-8424 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-KN-8426      TCGA-KN-8427      TCGA-KN-8428      TCGA-KN-8429 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-KN-8430      TCGA-KN-8431      TCGA-KN-8432      TCGA-KN-8433 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-KN-8434      TCGA-KN-8437      TCGA-KO-8404      TCGA-KO-8405 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-KO-8408      TCGA-KO-8409      TCGA-KO-8410      TCGA-KO-8413 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-KO-8415      TCGA-KO-8416      TCGA-KO-8417      TCGA-KV-A6GD 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-KV-A6GE      TCGA-P4-A5E6      TCGA-P4-A5E7      TCGA-P4-A5E8 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-P4-A5EA      TCGA-PJ-A5Z8      TCGA-Q2-A5QZ 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPR50 MUTATED        1      0      0      0      1
  GPR50 WILD-TYPE     25     43     62    100     45
D26V10, multiclass
[1] "Remove cluster labels:" "GPR50 MUTATED"         
clus
  GPR50 MUTATED GPR50 WILD-TYPE 
              2             275 
     TCGA-A3-3317      TCGA-A3-3358      TCGA-A3-3387      TCGA-A4-7286 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-A4-7287      TCGA-A4-7288      TCGA-A4-7585      TCGA-A4-7734 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-A4-7828      TCGA-A4-7915      TCGA-A4-7996      TCGA-A4-7997 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-A4-8098      TCGA-A4-8310      TCGA-A4-8312      TCGA-A4-8515 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-A4-8517      TCGA-A4-8518      TCGA-A4-8630      TCGA-A4-A57E 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-A4-A5XZ      TCGA-A4-A5Y0      TCGA-A4-A5Y1      TCGA-AK-3440 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-AK-3458      TCGA-AK-3465      TCGA-AL-3466      TCGA-AL-3472 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-AL-3473      TCGA-AL-7173      TCGA-AT-A5NU      TCGA-B0-4700 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-B0-4706      TCGA-B0-4710      TCGA-B0-4712      TCGA-B0-4810 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-B0-4811      TCGA-B0-4836      TCGA-B0-4837      TCGA-B0-4852 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-B0-5080      TCGA-B0-5085      TCGA-B0-5088      TCGA-B0-5399 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-B0-5691      TCGA-B0-5692      TCGA-B0-5693      TCGA-B0-5694 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-B0-5695      TCGA-B0-5696      TCGA-B0-5699      TCGA-B0-5702 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-B0-5705      TCGA-B0-5709      TCGA-B1-5398      TCGA-B1-A47N 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-B1-A654      TCGA-B1-A656      TCGA-B1-A657      TCGA-B2-3923 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-B2-3924      TCGA-B2-5633      TCGA-B2-5635      TCGA-B3-3925 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-B3-4104      TCGA-B3-8121      TCGA-B4-5377      TCGA-B4-5836 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-B8-4621      TCGA-B8-5545      TCGA-B8-5550      TCGA-B8-5551 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-B8-5552      TCGA-B8-5553      TCGA-B9-4115      TCGA-B9-4117 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-B9-5156      TCGA-B9-A44B      TCGA-B9-A5W9      TCGA-B9-A69E 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-BP-4173      TCGA-BP-4340      TCGA-BP-4761      TCGA-BP-4770 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-BP-4787      TCGA-BP-4789      TCGA-BP-4790      TCGA-BP-4804 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-BP-4807      TCGA-BP-4961      TCGA-BP-4967      TCGA-BP-4968 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-BP-4970      TCGA-BP-4974      TCGA-BP-4976      TCGA-BP-4981 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-BP-4982      TCGA-BP-4985      TCGA-BP-4988      TCGA-BP-4989 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-BP-4992      TCGA-BP-4995      TCGA-BP-4998      TCGA-BP-5001 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-BP-5008      TCGA-BP-5009      TCGA-BQ-5876      TCGA-BQ-5877 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-BQ-5878      TCGA-BQ-5879      TCGA-BQ-5880      TCGA-BQ-5881 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-BQ-5882      TCGA-BQ-5883      TCGA-BQ-5884      TCGA-BQ-5886 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-BQ-5887      TCGA-BQ-5888      TCGA-BQ-5889      TCGA-BQ-5890 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-BQ-5891      TCGA-BQ-5892      TCGA-BQ-5893      TCGA-BQ-5894 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-BQ-7044      TCGA-BQ-7045      TCGA-BQ-7046      TCGA-BQ-7048 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-BQ-7050      TCGA-BQ-7051      TCGA-BQ-7053      TCGA-BQ-7055 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-BQ-7058      TCGA-BQ-7059      TCGA-BQ-7060      TCGA-BQ-7061 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-BQ-7062      TCGA-CJ-4870      TCGA-CJ-4875      TCGA-CJ-4876 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-CJ-4878      TCGA-CJ-4881      TCGA-CJ-4887      TCGA-CJ-4889 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-CJ-4890      TCGA-CJ-4895      TCGA-CJ-4900      TCGA-CJ-5671 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-CJ-5675      TCGA-CJ-5676      TCGA-CJ-5681      TCGA-CJ-5683 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-CJ-5686      TCGA-CJ-6031      TCGA-CJ-6032      TCGA-CW-5585 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-CW-5589      TCGA-CW-6087      TCGA-CZ-4854      TCGA-CZ-4857 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-CZ-4858      TCGA-CZ-5453      TCGA-CZ-5454      TCGA-CZ-5455 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-CZ-5457      TCGA-CZ-5459      TCGA-CZ-5462      TCGA-CZ-5463 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-CZ-5466      TCGA-CZ-5467      TCGA-CZ-5469      TCGA-CZ-5470 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-CZ-5989      TCGA-DV-5565      TCGA-DV-5566      TCGA-DV-5569 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-DW-5560      TCGA-DW-5561      TCGA-DW-7834      TCGA-DW-7837 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-DW-7838      TCGA-DW-7839      TCGA-DW-7840      TCGA-DW-7842 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-DZ-6131      TCGA-DZ-6132      TCGA-DZ-6133      TCGA-DZ-6134 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-DZ-6135      TCGA-EU-5904      TCGA-EV-5901      TCGA-EV-5902 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-EV-5903      TCGA-F9-A4JJ      TCGA-G7-6789      TCGA-G7-6790 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-G7-6792      TCGA-G7-6793      TCGA-G7-6795      TCGA-G7-6796 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-G7-7501      TCGA-G7-7502      TCGA-G7-A4TM      TCGA-GL-6846 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-GL-7773      TCGA-GL-7966      TCGA-GL-8500      TCGA-GL-A4EM 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-GL-A59T      TCGA-HE-7128      TCGA-HE-7130      TCGA-HE-A5NJ 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-IA-A40U      TCGA-IA-A40X      TCGA-IA-A40Y      TCGA-IZ-8195 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-IZ-8196      TCGA-IZ-A6M9      TCGA-J7-6720      TCGA-J7-8537 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-KL-8323      TCGA-KL-8324      TCGA-KL-8327      TCGA-KL-8328 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-KL-8331      TCGA-KL-8332      TCGA-KL-8333      TCGA-KL-8334 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-KL-8335      TCGA-KL-8336      TCGA-KL-8338      TCGA-KL-8339 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-KL-8340      TCGA-KL-8341      TCGA-KL-8342      TCGA-KL-8343 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-KL-8344      TCGA-KL-8345      TCGA-KM-8438      TCGA-KM-8439 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-KM-8441      TCGA-KM-8442      TCGA-KM-8639      TCGA-KN-8418 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-KN-8419      TCGA-KN-8422      TCGA-KN-8423      TCGA-KN-8424 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-KN-8426      TCGA-KN-8427      TCGA-KN-8428      TCGA-KN-8429 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-KN-8430      TCGA-KN-8431      TCGA-KN-8432      TCGA-KN-8433 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-KN-8434      TCGA-KN-8437      TCGA-KO-8404      TCGA-KO-8405 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-KO-8408      TCGA-KO-8409      TCGA-KO-8410      TCGA-KO-8413 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-KO-8415      TCGA-KO-8416      TCGA-KO-8417      TCGA-KV-A6GD 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-KV-A6GE      TCGA-P4-A5E6      TCGA-P4-A5E7      TCGA-P4-A5E8 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-P4-A5EA      TCGA-PJ-A5Z8      TCGA-Q2-A5QZ 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 

Clustering(27) Variable = CCDC120 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC120 MUTATED        0      0      0      0
  CCDC120 WILD-TYPE     21     17      9     14
D27V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC120 MUTATED        0      0      0      0      0
  CCDC120 WILD-TYPE     11     17     14     10      9
D27V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CCDC120 MUTATED        0      1      3
  CCDC120 WILD-TYPE    180    241    240
D27V3, multiclass
        clus
vv       CCDC120 MUTATED CCDC120 WILD-TYPE
  CLUS_1               0               180
  CLUS_2               1               241
  CLUS_3               3               240
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CCDC120 MUTATED        0      2      0
  CCDC120 WILD-TYPE    103    253    119
D27V4, multiclass
[1] "Remove cluster labels:" "CCDC120 MUTATED"       
clus
  CCDC120 MUTATED CCDC120 WILD-TYPE 
                2               475 
       TCGA-A3-3357        TCGA-A3-3358        TCGA-A3-3367        TCGA-A3-3370 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-A3-3373        TCGA-A3-3376        TCGA-A3-3385        TCGA-A3-3387 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-A4-7286        TCGA-A4-7287        TCGA-A4-7288        TCGA-A4-7583 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-A4-7584        TCGA-A4-7585        TCGA-A4-7732        TCGA-A4-7734 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-A4-7828        TCGA-A4-7915        TCGA-A4-7996        TCGA-A4-7997 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-A4-8098        TCGA-A4-8310        TCGA-A4-8311        TCGA-A4-8312 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-A4-8515        TCGA-A4-8517        TCGA-A4-8518        TCGA-A4-8630 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-A4-A48D        TCGA-A4-A4ZT        TCGA-A4-A57E        TCGA-A4-A5DU 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-A4-A5XZ        TCGA-A4-A5Y0        TCGA-A4-A5Y1        TCGA-A4-A6HP 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-AK-3428        TCGA-AK-3431        TCGA-AK-3434        TCGA-AK-3440 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-AK-3445        TCGA-AK-3450        TCGA-AK-3453        TCGA-AK-3454 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-AK-3458        TCGA-AK-3460        TCGA-AK-3461        TCGA-AL-7173 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-AT-A5NU        TCGA-B0-4690        TCGA-B0-4691        TCGA-B0-4693 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-B0-4694        TCGA-B0-4697        TCGA-B0-4700        TCGA-B0-4703 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-B0-4706        TCGA-B0-4707        TCGA-B0-4710        TCGA-B0-4712 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-B0-4713        TCGA-B0-4714        TCGA-B0-4718        TCGA-B0-4810 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-B0-4811        TCGA-B0-4813        TCGA-B0-4814        TCGA-B0-4815 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-B0-4816        TCGA-B0-4817        TCGA-B0-4818        TCGA-B0-4819 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-B0-4822        TCGA-B0-4823        TCGA-B0-4824        TCGA-B0-4827 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-B0-4828        TCGA-B0-4841        TCGA-B0-4842        TCGA-B0-4843 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-B0-4844        TCGA-B0-4845        TCGA-B0-4846        TCGA-B0-4847 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-B0-4848        TCGA-B0-4849        TCGA-B0-4852        TCGA-B0-4945 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-B0-5080        TCGA-B0-5083        TCGA-B0-5092        TCGA-B0-5094 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-B0-5095        TCGA-B0-5096        TCGA-B0-5097        TCGA-B0-5098 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-B0-5099        TCGA-B0-5100        TCGA-B0-5102        TCGA-B0-5104 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-B0-5106        TCGA-B0-5107        TCGA-B0-5108        TCGA-B0-5109 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-B0-5110        TCGA-B0-5113        TCGA-B0-5115        TCGA-B0-5116 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-B0-5117        TCGA-B0-5119        TCGA-B0-5120        TCGA-B0-5121 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-B0-5399        TCGA-B0-5400        TCGA-B0-5402        TCGA-B0-5691 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-B0-5692        TCGA-B0-5693        TCGA-B0-5694        TCGA-B0-5695 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-B0-5696        TCGA-B0-5697        TCGA-B0-5698        TCGA-B0-5699 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-B0-5701        TCGA-B0-5702        TCGA-B0-5703        TCGA-B0-5705 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-B0-5706        TCGA-B0-5707        TCGA-B0-5709        TCGA-B0-5710 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-B0-5711        TCGA-B0-5712        TCGA-B0-5713        TCGA-B0-5812 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-B1-5398        TCGA-B1-A47M        TCGA-B1-A47N        TCGA-B1-A654 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-B1-A655        TCGA-B1-A656        TCGA-B1-A657        TCGA-B2-3924 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-B2-4101        TCGA-B2-5633        TCGA-B2-5635        TCGA-B2-5641 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-B3-8121        TCGA-B4-5377        TCGA-B4-5832        TCGA-B4-5834 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-B4-5835        TCGA-B4-5836        TCGA-B4-5838        TCGA-B4-5843 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-B4-5844        TCGA-B8-4146        TCGA-B8-4153        TCGA-B8-4621 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-B8-4622        TCGA-B8-5158        TCGA-B8-5159        TCGA-B8-5162 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-B8-5163        TCGA-B8-5164        TCGA-B8-5165        TCGA-B8-5545 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-B8-5546        TCGA-B8-5549        TCGA-B8-5550        TCGA-B8-5551 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-B8-5552        TCGA-B8-5553        TCGA-B9-5156        TCGA-B9-7268 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-B9-A44B        TCGA-B9-A5W7        TCGA-B9-A5W8        TCGA-B9-A5W9 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-B9-A69E        TCGA-BP-4177        TCGA-BP-4760        TCGA-BP-4770 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-BP-4782        TCGA-BP-4795        TCGA-BP-4801        TCGA-BP-4993 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-BP-5010        TCGA-BP-5168        TCGA-BP-5169        TCGA-BP-5170 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-BP-5173        TCGA-BP-5174        TCGA-BP-5175        TCGA-BP-5176 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-BP-5177        TCGA-BP-5178        TCGA-BP-5180        TCGA-BP-5181 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-BP-5182        TCGA-BP-5183        TCGA-BP-5184        TCGA-BP-5185 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-BP-5186        TCGA-BP-5187        TCGA-BP-5189        TCGA-BP-5190 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-BP-5191        TCGA-BP-5192        TCGA-BP-5194        TCGA-BP-5195 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-BP-5196        TCGA-BP-5198        TCGA-BP-5199        TCGA-BP-5200 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-BP-5201        TCGA-BP-5202        TCGA-BQ-5875        TCGA-BQ-5876 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-BQ-5877        TCGA-BQ-5878        TCGA-BQ-5879        TCGA-BQ-5880 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-BQ-5881        TCGA-BQ-5882        TCGA-BQ-5883        TCGA-BQ-5884 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-BQ-5885        TCGA-BQ-5886        TCGA-BQ-5887        TCGA-BQ-5888 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-BQ-5889        TCGA-BQ-5890        TCGA-BQ-5891        TCGA-BQ-5892 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-BQ-5893        TCGA-BQ-5894        TCGA-BQ-7044        TCGA-BQ-7045 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-BQ-7046        TCGA-BQ-7048        TCGA-BQ-7050        TCGA-BQ-7051 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-BQ-7053        TCGA-BQ-7055        TCGA-BQ-7058        TCGA-BQ-7059 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-BQ-7060        TCGA-BQ-7061        TCGA-BQ-7062        TCGA-CJ-4869 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-CJ-4882        TCGA-CJ-4897        TCGA-CJ-4901        TCGA-CJ-4902 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-CJ-4903        TCGA-CJ-4904        TCGA-CJ-4905        TCGA-CJ-4907 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-CJ-4908        TCGA-CJ-4912        TCGA-CJ-4913        TCGA-CJ-4916 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-CJ-4918        TCGA-CJ-4920        TCGA-CJ-4923        TCGA-CJ-5671 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-CJ-5672        TCGA-CJ-5675        TCGA-CJ-5676        TCGA-CJ-5677 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-CJ-5678        TCGA-CJ-5679        TCGA-CJ-5680        TCGA-CJ-5681 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-CJ-5682        TCGA-CJ-5683        TCGA-CJ-5684        TCGA-CJ-5686 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-CJ-6027        TCGA-CJ-6028        TCGA-CJ-6030        TCGA-CJ-6031 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-CJ-6032        TCGA-CJ-6033        TCGA-CW-5580        TCGA-CW-5581 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-CW-5583        TCGA-CW-5585        TCGA-CW-5588        TCGA-CW-5589 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-CW-5591        TCGA-CW-6087        TCGA-CW-6090        TCGA-CW-6093 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-CW-6097        TCGA-CZ-4853        TCGA-CZ-4856        TCGA-CZ-4859 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-CZ-4863        TCGA-CZ-4865        TCGA-CZ-4866        TCGA-CZ-5451 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-CZ-5452        TCGA-CZ-5453        TCGA-CZ-5454        TCGA-CZ-5455 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-CZ-5456        TCGA-CZ-5457        TCGA-CZ-5458        TCGA-CZ-5459 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-CZ-5460        TCGA-CZ-5461        TCGA-CZ-5462        TCGA-CZ-5463 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-CZ-5465        TCGA-CZ-5466        TCGA-CZ-5467        TCGA-CZ-5468 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-CZ-5469        TCGA-CZ-5982        TCGA-CZ-5984        TCGA-CZ-5985 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-CZ-5986        TCGA-CZ-5987        TCGA-CZ-5988        TCGA-CZ-5989 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-DV-5565        TCGA-DV-5566        TCGA-DV-5568        TCGA-DV-5569 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-DV-5574        TCGA-DV-5575        TCGA-DV-5576        TCGA-DW-5560 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-DW-5561        TCGA-DW-7834        TCGA-DW-7837        TCGA-DW-7838 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-DW-7839        TCGA-DW-7840        TCGA-DW-7841        TCGA-DW-7842 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-DW-7963        TCGA-DZ-6131        TCGA-DZ-6132        TCGA-DZ-6133 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-DZ-6134        TCGA-DZ-6135        TCGA-EU-5904        TCGA-EU-5905 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-EU-5906        TCGA-EU-5907        TCGA-EV-5901        TCGA-EV-5902 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-EV-5903        TCGA-F9-A4JJ        TCGA-G7-6789        TCGA-G7-6790 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-G7-6792        TCGA-G7-6793        TCGA-G7-6795        TCGA-G7-6796 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-G7-6797        TCGA-G7-7501        TCGA-G7-7502        TCGA-G7-A4TM 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-GL-6846        TCGA-GL-7773        TCGA-GL-7966        TCGA-GL-8500 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-GL-A4EM        TCGA-GL-A59R        TCGA-GL-A59T        TCGA-HE-7128 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-HE-7129        TCGA-HE-7130        TCGA-HE-A5NF        TCGA-HE-A5NH 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-HE-A5NI        TCGA-HE-A5NJ        TCGA-HE-A5NK        TCGA-HE-A5NL 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-IA-A40U        TCGA-IA-A40X        TCGA-IA-A40Y        TCGA-IZ-8195 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-IZ-8196        TCGA-IZ-A6M8        TCGA-IZ-A6M9        TCGA-J7-6720 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-J7-8537        TCGA-KL-8323        TCGA-KL-8324        TCGA-KL-8325 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-KL-8326        TCGA-KL-8327        TCGA-KL-8328        TCGA-KL-8329 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-KL-8330        TCGA-KL-8331        TCGA-KL-8332        TCGA-KL-8333 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-KL-8334        TCGA-KL-8335        TCGA-KL-8336        TCGA-KL-8337 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-KL-8338        TCGA-KL-8339        TCGA-KL-8340        TCGA-KL-8341 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-KL-8342        TCGA-KL-8343        TCGA-KL-8344        TCGA-KL-8345 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-KL-8346        TCGA-KM-8438        TCGA-KM-8439        TCGA-KM-8440 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-KM-8441        TCGA-KM-8442        TCGA-KM-8443        TCGA-KM-8476 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-KM-8477        TCGA-KM-8639        TCGA-KN-8418        TCGA-KN-8419 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-KN-8421        TCGA-KN-8422        TCGA-KN-8423        TCGA-KN-8424 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-KN-8425        TCGA-KN-8426        TCGA-KN-8427        TCGA-KN-8428 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-KN-8429        TCGA-KN-8430        TCGA-KN-8431        TCGA-KN-8432 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-KN-8433        TCGA-KN-8434        TCGA-KN-8435        TCGA-KN-8436 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-KN-8437        TCGA-KO-8403        TCGA-KO-8404        TCGA-KO-8405 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-KO-8406        TCGA-KO-8407        TCGA-KO-8408        TCGA-KO-8409 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-KO-8410        TCGA-KO-8411        TCGA-KO-8413        TCGA-KO-8414 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-KO-8415        TCGA-KO-8416        TCGA-KO-8417        TCGA-KV-A6GD 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-KV-A6GE        TCGA-MH-A55W        TCGA-MH-A55Z        TCGA-MH-A560 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-MH-A561        TCGA-MH-A562        TCGA-P4-A5E6        TCGA-P4-A5E7 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-P4-A5E8        TCGA-P4-A5EA        TCGA-P4-A5EB        TCGA-P4-A5ED 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-PJ-A5Z8        TCGA-PJ-A5Z9        TCGA-Q2-A5QZ 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC120 MUTATED        0      1      3      0
  CCDC120 WILD-TYPE     98    173    242    149
D27V5, multiclass
        clus
vv       CCDC120 MUTATED CCDC120 WILD-TYPE
  CLUS_1               0                98
  CLUS_2               1               173
  CLUS_3               3               242
  CLUS_4               0               149
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CCDC120 MUTATED        0      0      3      1      0      0
  CCDC120 WILD-TYPE     80     90    174    137     90     91
D27V6, multiclass
        clus
vv       CCDC120 MUTATED CCDC120 WILD-TYPE
  CLUS_1               0                80
  CLUS_2               0                90
  CLUS_3               3               174
  CLUS_4               1               137
  CLUS_5               0                90
  CLUS_6               0                91
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CCDC120 MUTATED        0      1      3
  CCDC120 WILD-TYPE    214    147    293
D27V7, multiclass
        clus
vv       CCDC120 MUTATED CCDC120 WILD-TYPE
  CLUS_1               0               214
  CLUS_2               1               147
  CLUS_3               3               293
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CCDC120 MUTATED        0      4      0
  CCDC120 WILD-TYPE     72    472    110
D27V8, multiclass
        clus
vv       CCDC120 MUTATED CCDC120 WILD-TYPE
  CLUS_1               0                72
  CLUS_2               4               472
  CLUS_3               0               110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC120 MUTATED        0      0      0      2
  CCDC120 WILD-TYPE     76     60     42     97
D27V9, multiclass
[1] "Remove cluster labels:" "CCDC120 MUTATED"       
clus
  CCDC120 MUTATED CCDC120 WILD-TYPE 
                2               275 
       TCGA-A3-3317        TCGA-A3-3358        TCGA-A3-3387        TCGA-A4-7286 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-A4-7287        TCGA-A4-7288        TCGA-A4-7585        TCGA-A4-7734 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-A4-7828        TCGA-A4-7915        TCGA-A4-7996        TCGA-A4-7997 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-A4-8098        TCGA-A4-8310        TCGA-A4-8312        TCGA-A4-8515 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-A4-8517        TCGA-A4-8518        TCGA-A4-8630        TCGA-A4-A57E 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-A4-A5XZ        TCGA-A4-A5Y0        TCGA-A4-A5Y1        TCGA-AK-3440 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-AK-3458        TCGA-AK-3465        TCGA-AL-3466        TCGA-AL-3472 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-AL-3473        TCGA-AL-7173        TCGA-AT-A5NU        TCGA-B0-4700 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-B0-4706        TCGA-B0-4710        TCGA-B0-4712        TCGA-B0-4810 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-B0-4811        TCGA-B0-4836        TCGA-B0-4837        TCGA-B0-4852 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-B0-5080        TCGA-B0-5085        TCGA-B0-5088        TCGA-B0-5399 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-B0-5691        TCGA-B0-5692        TCGA-B0-5693        TCGA-B0-5694 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-B0-5695        TCGA-B0-5696        TCGA-B0-5699        TCGA-B0-5702 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-B0-5705        TCGA-B0-5709        TCGA-B1-5398        TCGA-B1-A47N 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-B1-A654        TCGA-B1-A656        TCGA-B1-A657        TCGA-B2-3923 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-B2-3924        TCGA-B2-5633        TCGA-B2-5635        TCGA-B3-3925 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-B3-4104        TCGA-B3-8121        TCGA-B4-5377        TCGA-B4-5836 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-B8-4621        TCGA-B8-5545        TCGA-B8-5550        TCGA-B8-5551 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-B8-5552        TCGA-B8-5553        TCGA-B9-4115        TCGA-B9-4117 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-B9-5156        TCGA-B9-A44B        TCGA-B9-A5W9        TCGA-B9-A69E 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-BP-4173        TCGA-BP-4340        TCGA-BP-4761        TCGA-BP-4770 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-BP-4787        TCGA-BP-4789        TCGA-BP-4790        TCGA-BP-4804 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-BP-4807        TCGA-BP-4961        TCGA-BP-4967        TCGA-BP-4968 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-BP-4970        TCGA-BP-4974        TCGA-BP-4976        TCGA-BP-4981 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-BP-4982        TCGA-BP-4985        TCGA-BP-4988        TCGA-BP-4989 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-BP-4992        TCGA-BP-4995        TCGA-BP-4998        TCGA-BP-5001 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-BP-5008        TCGA-BP-5009        TCGA-BQ-5876        TCGA-BQ-5877 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-BQ-5878        TCGA-BQ-5879        TCGA-BQ-5880        TCGA-BQ-5881 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-BQ-5882        TCGA-BQ-5883        TCGA-BQ-5884        TCGA-BQ-5886 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-BQ-5887        TCGA-BQ-5888        TCGA-BQ-5889        TCGA-BQ-5890 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-BQ-5891        TCGA-BQ-5892        TCGA-BQ-5893        TCGA-BQ-5894 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-BQ-7044        TCGA-BQ-7045        TCGA-BQ-7046        TCGA-BQ-7048 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-BQ-7050        TCGA-BQ-7051        TCGA-BQ-7053        TCGA-BQ-7055 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-BQ-7058        TCGA-BQ-7059        TCGA-BQ-7060        TCGA-BQ-7061 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-BQ-7062        TCGA-CJ-4870        TCGA-CJ-4875        TCGA-CJ-4878 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-CJ-4881        TCGA-CJ-4887        TCGA-CJ-4889        TCGA-CJ-4890 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-CJ-4895        TCGA-CJ-4900        TCGA-CJ-5671        TCGA-CJ-5675 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-CJ-5676        TCGA-CJ-5681        TCGA-CJ-5683        TCGA-CJ-5686 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-CJ-6031        TCGA-CJ-6032        TCGA-CW-5585        TCGA-CW-5589 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-CW-6087        TCGA-CZ-4854        TCGA-CZ-4857        TCGA-CZ-4858 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-CZ-5453        TCGA-CZ-5454        TCGA-CZ-5455        TCGA-CZ-5457 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-CZ-5459        TCGA-CZ-5462        TCGA-CZ-5463        TCGA-CZ-5466 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-CZ-5467        TCGA-CZ-5469        TCGA-CZ-5989        TCGA-DV-5565 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-DV-5566        TCGA-DV-5569        TCGA-DW-5560        TCGA-DW-5561 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-DW-7834        TCGA-DW-7837        TCGA-DW-7838        TCGA-DW-7839 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-DW-7840        TCGA-DW-7842        TCGA-DZ-6131        TCGA-DZ-6132 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-DZ-6133        TCGA-DZ-6134        TCGA-DZ-6135        TCGA-EU-5904 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-EV-5901        TCGA-EV-5902        TCGA-EV-5903        TCGA-F9-A4JJ 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-G7-6789        TCGA-G7-6790        TCGA-G7-6792        TCGA-G7-6793 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-G7-6795        TCGA-G7-6796        TCGA-G7-7501        TCGA-G7-7502 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-G7-A4TM        TCGA-GL-6846        TCGA-GL-7773        TCGA-GL-7966 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-GL-8500        TCGA-GL-A4EM        TCGA-GL-A59T        TCGA-HE-7128 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-HE-7130        TCGA-HE-A5NJ        TCGA-IA-A40U        TCGA-IA-A40X 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-IA-A40Y        TCGA-IZ-8195        TCGA-IZ-8196        TCGA-IZ-A6M9 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-J7-6720        TCGA-J7-8537        TCGA-KL-8323        TCGA-KL-8324 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-KL-8327        TCGA-KL-8328        TCGA-KL-8331        TCGA-KL-8332 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-KL-8333        TCGA-KL-8334        TCGA-KL-8335        TCGA-KL-8336 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-KL-8338        TCGA-KL-8339        TCGA-KL-8340        TCGA-KL-8341 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-KL-8342        TCGA-KL-8343        TCGA-KL-8344        TCGA-KL-8345 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-KM-8438        TCGA-KM-8439        TCGA-KM-8441        TCGA-KM-8442 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-KM-8639        TCGA-KN-8418        TCGA-KN-8419        TCGA-KN-8422 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-KN-8423        TCGA-KN-8424        TCGA-KN-8426        TCGA-KN-8427 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-KN-8428        TCGA-KN-8429        TCGA-KN-8430        TCGA-KN-8431 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-KN-8432        TCGA-KN-8433        TCGA-KN-8434        TCGA-KN-8436 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-KN-8437        TCGA-KO-8404        TCGA-KO-8405        TCGA-KO-8408 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-KO-8409        TCGA-KO-8410        TCGA-KO-8413        TCGA-KO-8415 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-KO-8416        TCGA-KO-8417        TCGA-KV-A6GD        TCGA-KV-A6GE 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-P4-A5E6        TCGA-P4-A5E7        TCGA-P4-A5E8        TCGA-P4-A5EA 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-PJ-A5Z8        TCGA-PJ-A5Z9        TCGA-Q2-A5QZ 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC120 MUTATED        0      0      0      2      0
  CCDC120 WILD-TYPE     26     43     62     98     46
D27V10, multiclass
[1] "Remove cluster labels:" "CCDC120 MUTATED"       
clus
  CCDC120 MUTATED CCDC120 WILD-TYPE 
                2               275 
       TCGA-A3-3317        TCGA-A3-3358        TCGA-A3-3387        TCGA-A4-7286 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-A4-7287        TCGA-A4-7288        TCGA-A4-7585        TCGA-A4-7734 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-A4-7828        TCGA-A4-7915        TCGA-A4-7996        TCGA-A4-7997 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-A4-8098        TCGA-A4-8310        TCGA-A4-8312        TCGA-A4-8515 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-A4-8517        TCGA-A4-8518        TCGA-A4-8630        TCGA-A4-A57E 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-A4-A5XZ        TCGA-A4-A5Y0        TCGA-A4-A5Y1        TCGA-AK-3440 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-AK-3458        TCGA-AK-3465        TCGA-AL-3466        TCGA-AL-3472 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-AL-3473        TCGA-AL-7173        TCGA-AT-A5NU        TCGA-B0-4700 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-B0-4706        TCGA-B0-4710        TCGA-B0-4712        TCGA-B0-4810 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-B0-4811        TCGA-B0-4836        TCGA-B0-4837        TCGA-B0-4852 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-B0-5080        TCGA-B0-5085        TCGA-B0-5088        TCGA-B0-5399 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-B0-5691        TCGA-B0-5692        TCGA-B0-5693        TCGA-B0-5694 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-B0-5695        TCGA-B0-5696        TCGA-B0-5699        TCGA-B0-5702 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-B0-5705        TCGA-B0-5709        TCGA-B1-5398        TCGA-B1-A47N 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-B1-A654        TCGA-B1-A656        TCGA-B1-A657        TCGA-B2-3923 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-B2-3924        TCGA-B2-5633        TCGA-B2-5635        TCGA-B3-3925 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-B3-4104        TCGA-B3-8121        TCGA-B4-5377        TCGA-B4-5836 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-B8-4621        TCGA-B8-5545        TCGA-B8-5550        TCGA-B8-5551 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-B8-5552        TCGA-B8-5553        TCGA-B9-4115        TCGA-B9-4117 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-B9-5156        TCGA-B9-A44B        TCGA-B9-A5W9        TCGA-B9-A69E 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-BP-4173        TCGA-BP-4340        TCGA-BP-4761        TCGA-BP-4770 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-BP-4787        TCGA-BP-4789        TCGA-BP-4790        TCGA-BP-4804 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-BP-4807        TCGA-BP-4961        TCGA-BP-4967        TCGA-BP-4968 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-BP-4970        TCGA-BP-4974        TCGA-BP-4976        TCGA-BP-4981 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-BP-4982        TCGA-BP-4985        TCGA-BP-4988        TCGA-BP-4989 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-BP-4992        TCGA-BP-4995        TCGA-BP-4998        TCGA-BP-5001 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-BP-5008        TCGA-BP-5009        TCGA-BQ-5876        TCGA-BQ-5877 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-BQ-5878        TCGA-BQ-5879        TCGA-BQ-5880        TCGA-BQ-5881 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-BQ-5882        TCGA-BQ-5883        TCGA-BQ-5884        TCGA-BQ-5886 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-BQ-5887        TCGA-BQ-5888        TCGA-BQ-5889        TCGA-BQ-5890 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-BQ-5891        TCGA-BQ-5892        TCGA-BQ-5893        TCGA-BQ-5894 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-BQ-7044        TCGA-BQ-7045        TCGA-BQ-7046        TCGA-BQ-7048 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-BQ-7050        TCGA-BQ-7051        TCGA-BQ-7053        TCGA-BQ-7055 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-BQ-7058        TCGA-BQ-7059        TCGA-BQ-7060        TCGA-BQ-7061 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-BQ-7062        TCGA-CJ-4870        TCGA-CJ-4875        TCGA-CJ-4878 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-CJ-4881        TCGA-CJ-4887        TCGA-CJ-4889        TCGA-CJ-4890 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-CJ-4895        TCGA-CJ-4900        TCGA-CJ-5671        TCGA-CJ-5675 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-CJ-5676        TCGA-CJ-5681        TCGA-CJ-5683        TCGA-CJ-5686 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-CJ-6031        TCGA-CJ-6032        TCGA-CW-5585        TCGA-CW-5589 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-CW-6087        TCGA-CZ-4854        TCGA-CZ-4857        TCGA-CZ-4858 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-CZ-5453        TCGA-CZ-5454        TCGA-CZ-5455        TCGA-CZ-5457 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-CZ-5459        TCGA-CZ-5462        TCGA-CZ-5463        TCGA-CZ-5466 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-CZ-5467        TCGA-CZ-5469        TCGA-CZ-5989        TCGA-DV-5565 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-DV-5566        TCGA-DV-5569        TCGA-DW-5560        TCGA-DW-5561 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-DW-7834        TCGA-DW-7837        TCGA-DW-7838        TCGA-DW-7839 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-DW-7840        TCGA-DW-7842        TCGA-DZ-6131        TCGA-DZ-6132 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-DZ-6133        TCGA-DZ-6134        TCGA-DZ-6135        TCGA-EU-5904 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-EV-5901        TCGA-EV-5902        TCGA-EV-5903        TCGA-F9-A4JJ 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-G7-6789        TCGA-G7-6790        TCGA-G7-6792        TCGA-G7-6793 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-G7-6795        TCGA-G7-6796        TCGA-G7-7501        TCGA-G7-7502 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-G7-A4TM        TCGA-GL-6846        TCGA-GL-7773        TCGA-GL-7966 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-GL-8500        TCGA-GL-A4EM        TCGA-GL-A59T        TCGA-HE-7128 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-HE-7130        TCGA-HE-A5NJ        TCGA-IA-A40U        TCGA-IA-A40X 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-IA-A40Y        TCGA-IZ-8195        TCGA-IZ-8196        TCGA-IZ-A6M9 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-J7-6720        TCGA-J7-8537        TCGA-KL-8323        TCGA-KL-8324 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-KL-8327        TCGA-KL-8328        TCGA-KL-8331        TCGA-KL-8332 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-KL-8333        TCGA-KL-8334        TCGA-KL-8335        TCGA-KL-8336 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-KL-8338        TCGA-KL-8339        TCGA-KL-8340        TCGA-KL-8341 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-KL-8342        TCGA-KL-8343        TCGA-KL-8344        TCGA-KL-8345 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-KM-8438        TCGA-KM-8439        TCGA-KM-8441        TCGA-KM-8442 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-KM-8639        TCGA-KN-8418        TCGA-KN-8419        TCGA-KN-8422 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-KN-8423        TCGA-KN-8424        TCGA-KN-8426        TCGA-KN-8427 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-KN-8428        TCGA-KN-8429        TCGA-KN-8430        TCGA-KN-8431 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-KN-8432        TCGA-KN-8433        TCGA-KN-8434        TCGA-KN-8436 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-KN-8437        TCGA-KO-8404        TCGA-KO-8405        TCGA-KO-8408 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-KO-8409        TCGA-KO-8410        TCGA-KO-8413        TCGA-KO-8415 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-KO-8416        TCGA-KO-8417        TCGA-KV-A6GD        TCGA-KV-A6GE 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-P4-A5E6        TCGA-P4-A5E7        TCGA-P4-A5E8        TCGA-P4-A5EA 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 
       TCGA-PJ-A5Z8        TCGA-PJ-A5Z9        TCGA-Q2-A5QZ 
"CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" "CCDC120 WILD-TYPE" 

Clustering(28) Variable = SLC6A14 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC6A14 MUTATED        0      0      0      0
  SLC6A14 WILD-TYPE     21     17      9     14
D28V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC6A14 MUTATED        0      0      0      0      0
  SLC6A14 WILD-TYPE     11     17     14     10      9
D28V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC6A14 MUTATED        2      1      2
  SLC6A14 WILD-TYPE    178    241    241
D28V3, multiclass
        clus
vv       SLC6A14 MUTATED SLC6A14 WILD-TYPE
  CLUS_1               2               178
  CLUS_2               1               241
  CLUS_3               2               241
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC6A14 MUTATED        1      0      2
  SLC6A14 WILD-TYPE    102    255    117
D28V4, multiclass
        clus
vv       SLC6A14 MUTATED SLC6A14 WILD-TYPE
  CLUS_1               1               102
  CLUS_2               0               255
  CLUS_3               2               117
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC6A14 MUTATED        1      2      1      1
  SLC6A14 WILD-TYPE     97    172    244    148
D28V5, multiclass
        clus
vv       SLC6A14 MUTATED SLC6A14 WILD-TYPE
  CLUS_1               1                97
  CLUS_2               2               172
  CLUS_3               1               244
  CLUS_4               1               148
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SLC6A14 MUTATED        1      1      0      1      1      1
  SLC6A14 WILD-TYPE     79     89    177    137     89     90
D28V6, multiclass
        clus
vv       SLC6A14 MUTATED SLC6A14 WILD-TYPE
  CLUS_1               1                79
  CLUS_2               1                89
  CLUS_3               0               177
  CLUS_4               1               137
  CLUS_5               1                89
  CLUS_6               1                90
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC6A14 MUTATED        2      2      1
  SLC6A14 WILD-TYPE    212    146    295
D28V7, multiclass
        clus
vv       SLC6A14 MUTATED SLC6A14 WILD-TYPE
  CLUS_1               2               212
  CLUS_2               2               146
  CLUS_3               1               295
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC6A14 MUTATED        1      3      1
  SLC6A14 WILD-TYPE     71    473    109
D28V8, multiclass
        clus
vv       SLC6A14 MUTATED SLC6A14 WILD-TYPE
  CLUS_1               1                71
  CLUS_2               3               473
  CLUS_3               1               109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC6A14 MUTATED        1      1      2      0
  SLC6A14 WILD-TYPE     75     59     40     99
D28V9, multiclass
        clus
vv       SLC6A14 MUTATED SLC6A14 WILD-TYPE
  CLUS_1               1                75
  CLUS_2               1                59
  CLUS_3               2                40
  CLUS_4               0                99
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC6A14 MUTATED        1      0      2      0      1
  SLC6A14 WILD-TYPE     25     43     60    100     45
D28V10, multiclass
        clus
vv       SLC6A14 MUTATED SLC6A14 WILD-TYPE
  CLUS_1               1                25
  CLUS_2               0                43
  CLUS_3               2                60
  CLUS_4               0               100
  CLUS_5               1                45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(29) Variable = CYP4F11 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYP4F11 MUTATED        0      0      0      0
  CYP4F11 WILD-TYPE     21     17      9     14
D29V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CYP4F11 MUTATED        0      0      0      0      0
  CYP4F11 WILD-TYPE     11     17     14     10      9
D29V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CYP4F11 MUTATED        0      2      3
  CYP4F11 WILD-TYPE    180    240    240
D29V3, multiclass
        clus
vv       CYP4F11 MUTATED CYP4F11 WILD-TYPE
  CLUS_1               0               180
  CLUS_2               2               240
  CLUS_3               3               240
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CYP4F11 MUTATED        1      2      0
  CYP4F11 WILD-TYPE    102    253    119
D29V4, multiclass
        clus
vv       CYP4F11 MUTATED CYP4F11 WILD-TYPE
  CLUS_1               1               102
  CLUS_2               2               253
  CLUS_3               0               119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYP4F11 MUTATED        0      3      2      0
  CYP4F11 WILD-TYPE     98    171    243    149
D29V5, multiclass
        clus
vv       CYP4F11 MUTATED CYP4F11 WILD-TYPE
  CLUS_1               0                98
  CLUS_2               3               171
  CLUS_3               2               243
  CLUS_4               0               149
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CYP4F11 MUTATED        0      1      1      2      1      0
  CYP4F11 WILD-TYPE     80     89    176    136     89     91
D29V6, multiclass
        clus
vv       CYP4F11 MUTATED CYP4F11 WILD-TYPE
  CLUS_1               0                80
  CLUS_2               1                89
  CLUS_3               1               176
  CLUS_4               2               136
  CLUS_5               1                89
  CLUS_6               0                91
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CYP4F11 MUTATED        0      2      3
  CYP4F11 WILD-TYPE    214    146    293
D29V7, multiclass
        clus
vv       CYP4F11 MUTATED CYP4F11 WILD-TYPE
  CLUS_1               0               214
  CLUS_2               2               146
  CLUS_3               3               293
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CYP4F11 MUTATED        0      5      0
  CYP4F11 WILD-TYPE     72    471    110
D29V8, multiclass
        clus
vv       CYP4F11 MUTATED CYP4F11 WILD-TYPE
  CLUS_1               0                72
  CLUS_2               5               471
  CLUS_3               0               110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYP4F11 MUTATED        0      0      1      1
  CYP4F11 WILD-TYPE     76     60     41     98
D29V9, multiclass
[1] "Remove cluster labels:" "CYP4F11 MUTATED"       
clus
  CYP4F11 MUTATED CYP4F11 WILD-TYPE 
                2               275 
       TCGA-A3-3317        TCGA-A3-3358        TCGA-A3-3387        TCGA-A4-7286 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-A4-7287        TCGA-A4-7288        TCGA-A4-7585        TCGA-A4-7734 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-A4-7828        TCGA-A4-7915        TCGA-A4-7996        TCGA-A4-7997 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-A4-8098        TCGA-A4-8310        TCGA-A4-8312        TCGA-A4-8515 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-A4-8517        TCGA-A4-8518        TCGA-A4-8630        TCGA-A4-A57E 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-A4-A5XZ        TCGA-A4-A5Y0        TCGA-A4-A5Y1        TCGA-AK-3440 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AK-3458        TCGA-AK-3465        TCGA-AL-3466        TCGA-AL-3472 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AL-3473        TCGA-AL-7173        TCGA-AT-A5NU        TCGA-B0-4700 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-B0-4706        TCGA-B0-4710        TCGA-B0-4712        TCGA-B0-4810 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-B0-4811        TCGA-B0-4836        TCGA-B0-4837        TCGA-B0-4852 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-B0-5080        TCGA-B0-5085        TCGA-B0-5088        TCGA-B0-5399 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-B0-5691        TCGA-B0-5692        TCGA-B0-5693        TCGA-B0-5694 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-B0-5695        TCGA-B0-5696        TCGA-B0-5699        TCGA-B0-5702 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-B0-5705        TCGA-B0-5709        TCGA-B1-5398        TCGA-B1-A47N 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-B1-A654        TCGA-B1-A656        TCGA-B1-A657        TCGA-B2-3923 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-B2-3924        TCGA-B2-5633        TCGA-B2-5635        TCGA-B3-3925 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-B3-4104        TCGA-B3-8121        TCGA-B4-5377        TCGA-B4-5836 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-B8-4621        TCGA-B8-5545        TCGA-B8-5550        TCGA-B8-5551 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-B8-5552        TCGA-B8-5553        TCGA-B9-4115        TCGA-B9-4117 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-B9-5156        TCGA-B9-A44B        TCGA-B9-A5W9        TCGA-B9-A69E 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-BP-4173        TCGA-BP-4340        TCGA-BP-4761        TCGA-BP-4770 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-BP-4789        TCGA-BP-4790        TCGA-BP-4804        TCGA-BP-4807 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-BP-4961        TCGA-BP-4967        TCGA-BP-4968        TCGA-BP-4970 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-BP-4974        TCGA-BP-4976        TCGA-BP-4981        TCGA-BP-4982 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-BP-4985        TCGA-BP-4988        TCGA-BP-4989        TCGA-BP-4992 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-BP-4995        TCGA-BP-4998        TCGA-BP-5001        TCGA-BP-5008 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-BP-5009        TCGA-BQ-5876        TCGA-BQ-5877        TCGA-BQ-5878 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-BQ-5879        TCGA-BQ-5880        TCGA-BQ-5881        TCGA-BQ-5882 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-BQ-5883        TCGA-BQ-5884        TCGA-BQ-5886        TCGA-BQ-5887 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-BQ-5888        TCGA-BQ-5889        TCGA-BQ-5890        TCGA-BQ-5891 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-BQ-5892        TCGA-BQ-5893        TCGA-BQ-5894        TCGA-BQ-7044 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-BQ-7045        TCGA-BQ-7046        TCGA-BQ-7048        TCGA-BQ-7050 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-BQ-7051        TCGA-BQ-7053        TCGA-BQ-7055        TCGA-BQ-7058 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-BQ-7059        TCGA-BQ-7060        TCGA-BQ-7061        TCGA-BQ-7062 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-CJ-4870        TCGA-CJ-4875        TCGA-CJ-4876        TCGA-CJ-4878 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-CJ-4881        TCGA-CJ-4887        TCGA-CJ-4889        TCGA-CJ-4890 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-CJ-4895        TCGA-CJ-4900        TCGA-CJ-5671        TCGA-CJ-5675 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-CJ-5676        TCGA-CJ-5681        TCGA-CJ-5683        TCGA-CJ-5686 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-CJ-6031        TCGA-CJ-6032        TCGA-CW-5585        TCGA-CW-5589 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-CW-6087        TCGA-CZ-4854        TCGA-CZ-4857        TCGA-CZ-4858 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-CZ-5453        TCGA-CZ-5454        TCGA-CZ-5455        TCGA-CZ-5457 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-CZ-5459        TCGA-CZ-5462        TCGA-CZ-5463        TCGA-CZ-5466 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-CZ-5467        TCGA-CZ-5469        TCGA-CZ-5470        TCGA-CZ-5989 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-DV-5565        TCGA-DV-5566        TCGA-DV-5569        TCGA-DW-5560 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-DW-5561        TCGA-DW-7834        TCGA-DW-7837        TCGA-DW-7838 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-DW-7839        TCGA-DW-7840        TCGA-DW-7842        TCGA-DZ-6131 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-DZ-6132        TCGA-DZ-6133        TCGA-DZ-6134        TCGA-DZ-6135 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-EU-5904        TCGA-EV-5901        TCGA-EV-5902        TCGA-EV-5903 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-F9-A4JJ        TCGA-G7-6789        TCGA-G7-6790        TCGA-G7-6792 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-G7-6793        TCGA-G7-6795        TCGA-G7-6796        TCGA-G7-7501 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-G7-7502        TCGA-G7-A4TM        TCGA-GL-6846        TCGA-GL-7773 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-GL-7966        TCGA-GL-8500        TCGA-GL-A4EM        TCGA-GL-A59T 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-HE-7128        TCGA-HE-7130        TCGA-HE-A5NJ        TCGA-IA-A40U 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-IA-A40X        TCGA-IA-A40Y        TCGA-IZ-8195        TCGA-IZ-8196 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-IZ-A6M9        TCGA-J7-6720        TCGA-J7-8537        TCGA-KL-8323 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-KL-8324        TCGA-KL-8327        TCGA-KL-8328        TCGA-KL-8331 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-KL-8332        TCGA-KL-8333        TCGA-KL-8334        TCGA-KL-8335 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-KL-8336        TCGA-KL-8338        TCGA-KL-8339        TCGA-KL-8340 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-KL-8341        TCGA-KL-8342        TCGA-KL-8343        TCGA-KL-8344 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-KL-8345        TCGA-KM-8438        TCGA-KM-8439        TCGA-KM-8441 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-KM-8442        TCGA-KM-8639        TCGA-KN-8418        TCGA-KN-8419 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-KN-8422        TCGA-KN-8423        TCGA-KN-8424        TCGA-KN-8426 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-KN-8428        TCGA-KN-8429        TCGA-KN-8430        TCGA-KN-8431 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-KN-8432        TCGA-KN-8433        TCGA-KN-8434        TCGA-KN-8436 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-KN-8437        TCGA-KO-8404        TCGA-KO-8405        TCGA-KO-8408 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-KO-8409        TCGA-KO-8410        TCGA-KO-8413        TCGA-KO-8415 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-KO-8416        TCGA-KO-8417        TCGA-KV-A6GD        TCGA-KV-A6GE 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-P4-A5E6        TCGA-P4-A5E7        TCGA-P4-A5E8        TCGA-P4-A5EA 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-PJ-A5Z8        TCGA-PJ-A5Z9        TCGA-Q2-A5QZ 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CYP4F11 MUTATED        0      0      1      1      0
  CYP4F11 WILD-TYPE     26     43     61     99     46
D29V10, multiclass
[1] "Remove cluster labels:" "CYP4F11 MUTATED"       
clus
  CYP4F11 MUTATED CYP4F11 WILD-TYPE 
                2               275 
       TCGA-A3-3317        TCGA-A3-3358        TCGA-A3-3387        TCGA-A4-7286 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-A4-7287        TCGA-A4-7288        TCGA-A4-7585        TCGA-A4-7734 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-A4-7828        TCGA-A4-7915        TCGA-A4-7996        TCGA-A4-7997 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-A4-8098        TCGA-A4-8310        TCGA-A4-8312        TCGA-A4-8515 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-A4-8517        TCGA-A4-8518        TCGA-A4-8630        TCGA-A4-A57E 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-A4-A5XZ        TCGA-A4-A5Y0        TCGA-A4-A5Y1        TCGA-AK-3440 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AK-3458        TCGA-AK-3465        TCGA-AL-3466        TCGA-AL-3472 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AL-3473        TCGA-AL-7173        TCGA-AT-A5NU        TCGA-B0-4700 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-B0-4706        TCGA-B0-4710        TCGA-B0-4712        TCGA-B0-4810 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-B0-4811        TCGA-B0-4836        TCGA-B0-4837        TCGA-B0-4852 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-B0-5080        TCGA-B0-5085        TCGA-B0-5088        TCGA-B0-5399 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-B0-5691        TCGA-B0-5692        TCGA-B0-5693        TCGA-B0-5694 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-B0-5695        TCGA-B0-5696        TCGA-B0-5699        TCGA-B0-5702 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-B0-5705        TCGA-B0-5709        TCGA-B1-5398        TCGA-B1-A47N 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-B1-A654        TCGA-B1-A656        TCGA-B1-A657        TCGA-B2-3923 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-B2-3924        TCGA-B2-5633        TCGA-B2-5635        TCGA-B3-3925 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-B3-4104        TCGA-B3-8121        TCGA-B4-5377        TCGA-B4-5836 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-B8-4621        TCGA-B8-5545        TCGA-B8-5550        TCGA-B8-5551 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-B8-5552        TCGA-B8-5553        TCGA-B9-4115        TCGA-B9-4117 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-B9-5156        TCGA-B9-A44B        TCGA-B9-A5W9        TCGA-B9-A69E 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-BP-4173        TCGA-BP-4340        TCGA-BP-4761        TCGA-BP-4770 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-BP-4789        TCGA-BP-4790        TCGA-BP-4804        TCGA-BP-4807 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-BP-4961        TCGA-BP-4967        TCGA-BP-4968        TCGA-BP-4970 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-BP-4974        TCGA-BP-4976        TCGA-BP-4981        TCGA-BP-4982 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-BP-4985        TCGA-BP-4988        TCGA-BP-4989        TCGA-BP-4992 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-BP-4995        TCGA-BP-4998        TCGA-BP-5001        TCGA-BP-5008 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-BP-5009        TCGA-BQ-5876        TCGA-BQ-5877        TCGA-BQ-5878 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-BQ-5879        TCGA-BQ-5880        TCGA-BQ-5881        TCGA-BQ-5882 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-BQ-5883        TCGA-BQ-5884        TCGA-BQ-5886        TCGA-BQ-5887 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-BQ-5888        TCGA-BQ-5889        TCGA-BQ-5890        TCGA-BQ-5891 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-BQ-5892        TCGA-BQ-5893        TCGA-BQ-5894        TCGA-BQ-7044 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-BQ-7045        TCGA-BQ-7046        TCGA-BQ-7048        TCGA-BQ-7050 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-BQ-7051        TCGA-BQ-7053        TCGA-BQ-7055        TCGA-BQ-7058 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-BQ-7059        TCGA-BQ-7060        TCGA-BQ-7061        TCGA-BQ-7062 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-CJ-4870        TCGA-CJ-4875        TCGA-CJ-4876        TCGA-CJ-4878 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-CJ-4881        TCGA-CJ-4887        TCGA-CJ-4889        TCGA-CJ-4890 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-CJ-4895        TCGA-CJ-4900        TCGA-CJ-5671        TCGA-CJ-5675 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-CJ-5676        TCGA-CJ-5681        TCGA-CJ-5683        TCGA-CJ-5686 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-CJ-6031        TCGA-CJ-6032        TCGA-CW-5585        TCGA-CW-5589 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-CW-6087        TCGA-CZ-4854        TCGA-CZ-4857        TCGA-CZ-4858 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-CZ-5453        TCGA-CZ-5454        TCGA-CZ-5455        TCGA-CZ-5457 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-CZ-5459        TCGA-CZ-5462        TCGA-CZ-5463        TCGA-CZ-5466 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-CZ-5467        TCGA-CZ-5469        TCGA-CZ-5470        TCGA-CZ-5989 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-DV-5565        TCGA-DV-5566        TCGA-DV-5569        TCGA-DW-5560 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-DW-5561        TCGA-DW-7834        TCGA-DW-7837        TCGA-DW-7838 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-DW-7839        TCGA-DW-7840        TCGA-DW-7842        TCGA-DZ-6131 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-DZ-6132        TCGA-DZ-6133        TCGA-DZ-6134        TCGA-DZ-6135 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-EU-5904        TCGA-EV-5901        TCGA-EV-5902        TCGA-EV-5903 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-F9-A4JJ        TCGA-G7-6789        TCGA-G7-6790        TCGA-G7-6792 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-G7-6793        TCGA-G7-6795        TCGA-G7-6796        TCGA-G7-7501 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-G7-7502        TCGA-G7-A4TM        TCGA-GL-6846        TCGA-GL-7773 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-GL-7966        TCGA-GL-8500        TCGA-GL-A4EM        TCGA-GL-A59T 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-HE-7128        TCGA-HE-7130        TCGA-HE-A5NJ        TCGA-IA-A40U 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-IA-A40X        TCGA-IA-A40Y        TCGA-IZ-8195        TCGA-IZ-8196 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-IZ-A6M9        TCGA-J7-6720        TCGA-J7-8537        TCGA-KL-8323 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-KL-8324        TCGA-KL-8327        TCGA-KL-8328        TCGA-KL-8331 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-KL-8332        TCGA-KL-8333        TCGA-KL-8334        TCGA-KL-8335 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-KL-8336        TCGA-KL-8338        TCGA-KL-8339        TCGA-KL-8340 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-KL-8341        TCGA-KL-8342        TCGA-KL-8343        TCGA-KL-8344 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-KL-8345        TCGA-KM-8438        TCGA-KM-8439        TCGA-KM-8441 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-KM-8442        TCGA-KM-8639        TCGA-KN-8418        TCGA-KN-8419 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-KN-8422        TCGA-KN-8423        TCGA-KN-8424        TCGA-KN-8426 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-KN-8428        TCGA-KN-8429        TCGA-KN-8430        TCGA-KN-8431 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-KN-8432        TCGA-KN-8433        TCGA-KN-8434        TCGA-KN-8436 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-KN-8437        TCGA-KO-8404        TCGA-KO-8405        TCGA-KO-8408 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-KO-8409        TCGA-KO-8410        TCGA-KO-8413        TCGA-KO-8415 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-KO-8416        TCGA-KO-8417        TCGA-KV-A6GD        TCGA-KV-A6GE 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-P4-A5E6        TCGA-P4-A5E7        TCGA-P4-A5E8        TCGA-P4-A5EA 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-PJ-A5Z8        TCGA-PJ-A5Z9        TCGA-Q2-A5QZ 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 

Clustering(30) Variable = STAG2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STAG2 MUTATED        0      0      1      0
  STAG2 WILD-TYPE     21     17      8     14
D30V1, multiclass
[1] "Remove cluster labels:" "STAG2 MUTATED"         
clus
  STAG2 MUTATED STAG2 WILD-TYPE 
              1              60 
     TCGA-A3-3311      TCGA-A3-3316      TCGA-A3-3317      TCGA-A3-3322 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-A3-3323      TCGA-A3-3326      TCGA-A3-3331      TCGA-A3-3347 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-A3-3349      TCGA-A3-3362      TCGA-A3-3363      TCGA-A3-3365 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-A3-3374      TCGA-A3-3380      TCGA-A3-3383      TCGA-AK-3427 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-AK-3440      TCGA-AK-3443      TCGA-AK-3453      TCGA-AK-3455 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-AK-3456      TCGA-AK-3465      TCGA-AL-3466      TCGA-AL-3467 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-AL-3472      TCGA-AL-3473      TCGA-AS-3777      TCGA-AS-3778 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-B2-3923      TCGA-B2-3924      TCGA-B2-4098      TCGA-B2-4099 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-B3-3925      TCGA-B3-3926      TCGA-B3-4103      TCGA-B8-4143 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-B8-4148      TCGA-B8-4151      TCGA-B8-4154      TCGA-B8-4619 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-B8-4620      TCGA-B9-4113      TCGA-B9-4114      TCGA-B9-4115 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-B9-4116      TCGA-B9-4117      TCGA-BP-4161      TCGA-BP-4162 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-BP-4163      TCGA-BP-4164      TCGA-BP-4167      TCGA-CJ-4634 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-CJ-4636      TCGA-CJ-4637      TCGA-CJ-4638      TCGA-CJ-4639 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-CJ-4640      TCGA-CJ-4641      TCGA-CJ-4643      TCGA-CJ-4644 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  STAG2 MUTATED        0      0      0      0      1
  STAG2 WILD-TYPE     11     17     14     10      8
D30V2, multiclass
[1] "Remove cluster labels:" "STAG2 MUTATED"         
clus
  STAG2 MUTATED STAG2 WILD-TYPE 
              1              60 
     TCGA-A3-3311      TCGA-A3-3316      TCGA-A3-3317      TCGA-A3-3322 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-A3-3323      TCGA-A3-3326      TCGA-A3-3331      TCGA-A3-3347 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-A3-3349      TCGA-A3-3362      TCGA-A3-3363      TCGA-A3-3365 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-A3-3374      TCGA-A3-3380      TCGA-A3-3383      TCGA-AK-3427 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-AK-3440      TCGA-AK-3443      TCGA-AK-3453      TCGA-AK-3455 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-AK-3456      TCGA-AK-3465      TCGA-AL-3466      TCGA-AL-3467 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-AL-3472      TCGA-AL-3473      TCGA-AS-3777      TCGA-AS-3778 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-B2-3923      TCGA-B2-3924      TCGA-B2-4098      TCGA-B2-4099 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-B3-3925      TCGA-B3-3926      TCGA-B3-4103      TCGA-B8-4143 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-B8-4148      TCGA-B8-4151      TCGA-B8-4154      TCGA-B8-4619 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-B8-4620      TCGA-B9-4113      TCGA-B9-4114      TCGA-B9-4115 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-B9-4116      TCGA-B9-4117      TCGA-BP-4161      TCGA-BP-4162 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-BP-4163      TCGA-BP-4164      TCGA-BP-4167      TCGA-CJ-4634 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-CJ-4636      TCGA-CJ-4637      TCGA-CJ-4638      TCGA-CJ-4639 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-CJ-4640      TCGA-CJ-4641      TCGA-CJ-4643      TCGA-CJ-4644 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STAG2 MUTATED        4      5      5
  STAG2 WILD-TYPE    176    237    238
D30V3, multiclass
        clus
vv       STAG2 MUTATED STAG2 WILD-TYPE
  CLUS_1             4             176
  CLUS_2             5             237
  CLUS_3             5             238
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STAG2 MUTATED        3      7      2
  STAG2 WILD-TYPE    100    248    117
D30V4, multiclass
        clus
vv       STAG2 MUTATED STAG2 WILD-TYPE
  CLUS_1             3             100
  CLUS_2             7             248
  CLUS_3             2             117
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STAG2 MUTATED        3      5      3      3
  STAG2 WILD-TYPE     95    169    242    146
D30V5, multiclass
        clus
vv       STAG2 MUTATED STAG2 WILD-TYPE
  CLUS_1             3              95
  CLUS_2             5             169
  CLUS_3             3             242
  CLUS_4             3             146
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  STAG2 MUTATED        0      6      1      4      3      0
  STAG2 WILD-TYPE     80     84    176    134     87     91
D30V6, multiclass
        clus
vv       STAG2 MUTATED STAG2 WILD-TYPE
  CLUS_1             0              80
  CLUS_2             6              84
  CLUS_3             1             176
  CLUS_4             4             134
  CLUS_5             3              87
  CLUS_6             0              91
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STAG2 MUTATED        4      6      4
  STAG2 WILD-TYPE    210    142    292
D30V7, multiclass
        clus
vv       STAG2 MUTATED STAG2 WILD-TYPE
  CLUS_1             4             210
  CLUS_2             6             142
  CLUS_3             4             292
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STAG2 MUTATED        0     13      1
  STAG2 WILD-TYPE     72    463    109
D30V8, multiclass
        clus
vv       STAG2 MUTATED STAG2 WILD-TYPE
  CLUS_1             0              72
  CLUS_2            13             463
  CLUS_3             1             109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STAG2 MUTATED        1      1      4      3
  STAG2 WILD-TYPE     75     59     38     96
D30V9, multiclass
        clus
vv       STAG2 MUTATED STAG2 WILD-TYPE
  CLUS_1             1              75
  CLUS_2             1              59
  CLUS_3             4              38
  CLUS_4             3              96
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  STAG2 MUTATED        0      1      5      3      0
  STAG2 WILD-TYPE     26     42     57     97     46
D30V10, multiclass
        clus
vv       STAG2 MUTATED STAG2 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             1              42
  CLUS_3             5              57
  CLUS_4             3              97
  CLUS_5             0              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(31) Variable = SKI MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SKI MUTATED        0      0      1      0
  SKI WILD-TYPE     21     17      8     14
D31V1, multiclass
[1] "Remove cluster labels:" "SKI MUTATED"           
clus
  SKI MUTATED SKI WILD-TYPE 
            1            60 
   TCGA-A3-3311    TCGA-A3-3316    TCGA-A3-3317    TCGA-A3-3322    TCGA-A3-3323 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-A3-3326    TCGA-A3-3331    TCGA-A3-3347    TCGA-A3-3349    TCGA-A3-3362 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-A3-3363    TCGA-A3-3365    TCGA-A3-3374    TCGA-A3-3380    TCGA-A3-3383 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-AK-3427    TCGA-AK-3440    TCGA-AK-3443    TCGA-AK-3453    TCGA-AK-3455 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-AK-3456    TCGA-AK-3465    TCGA-AL-3466    TCGA-AL-3467    TCGA-AL-3472 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-AL-3473    TCGA-AS-3778    TCGA-B2-3923    TCGA-B2-3924    TCGA-B2-4098 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-B2-4099    TCGA-B3-3925    TCGA-B3-3926    TCGA-B3-4103    TCGA-B3-4104 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-B8-4143    TCGA-B8-4148    TCGA-B8-4151    TCGA-B8-4154    TCGA-B8-4619 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-B8-4620    TCGA-B9-4113    TCGA-B9-4114    TCGA-B9-4115    TCGA-B9-4116 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-B9-4117    TCGA-BP-4161    TCGA-BP-4162    TCGA-BP-4163    TCGA-BP-4164 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-BP-4167    TCGA-CJ-4634    TCGA-CJ-4636    TCGA-CJ-4637    TCGA-CJ-4638 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-CJ-4639    TCGA-CJ-4640    TCGA-CJ-4641    TCGA-CJ-4643    TCGA-CJ-4644 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SKI MUTATED        0      0      0      0      1
  SKI WILD-TYPE     11     17     14     10      8
D31V2, multiclass
[1] "Remove cluster labels:" "SKI MUTATED"           
clus
  SKI MUTATED SKI WILD-TYPE 
            1            60 
   TCGA-A3-3311    TCGA-A3-3316    TCGA-A3-3317    TCGA-A3-3322    TCGA-A3-3323 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-A3-3326    TCGA-A3-3331    TCGA-A3-3347    TCGA-A3-3349    TCGA-A3-3362 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-A3-3363    TCGA-A3-3365    TCGA-A3-3374    TCGA-A3-3380    TCGA-A3-3383 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-AK-3427    TCGA-AK-3440    TCGA-AK-3443    TCGA-AK-3453    TCGA-AK-3455 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-AK-3456    TCGA-AK-3465    TCGA-AL-3466    TCGA-AL-3467    TCGA-AL-3472 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-AL-3473    TCGA-AS-3778    TCGA-B2-3923    TCGA-B2-3924    TCGA-B2-4098 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-B2-4099    TCGA-B3-3925    TCGA-B3-3926    TCGA-B3-4103    TCGA-B3-4104 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-B8-4143    TCGA-B8-4148    TCGA-B8-4151    TCGA-B8-4154    TCGA-B8-4619 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-B8-4620    TCGA-B9-4113    TCGA-B9-4114    TCGA-B9-4115    TCGA-B9-4116 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-B9-4117    TCGA-BP-4161    TCGA-BP-4162    TCGA-BP-4163    TCGA-BP-4164 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-BP-4167    TCGA-CJ-4634    TCGA-CJ-4636    TCGA-CJ-4637    TCGA-CJ-4638 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
   TCGA-CJ-4639    TCGA-CJ-4640    TCGA-CJ-4641    TCGA-CJ-4643    TCGA-CJ-4644 
"SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" "SKI WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  SKI MUTATED        7      2      0
  SKI WILD-TYPE    173    240    243
D31V3, multiclass
        clus
vv       SKI MUTATED SKI WILD-TYPE
  CLUS_1           7           173
  CLUS_2           2           240
  CLUS_3           0           243
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  SKI MUTATED        2      2      4
  SKI WILD-TYPE    101    253    115
D31V4, multiclass
        clus
vv       SKI MUTATED SKI WILD-TYPE
  CLUS_1           2           101
  CLUS_2           2           253
  CLUS_3           4           115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SKI MUTATED        3      0      0      6
  SKI WILD-TYPE     95    174    245    143
D31V5, multiclass
        clus
vv       SKI MUTATED SKI WILD-TYPE
  CLUS_1           3            95
  CLUS_2           0           174
  CLUS_3           0           245
  CLUS_4           6           143
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SKI MUTATED        3      3      0      0      0      3
  SKI WILD-TYPE     77     87    177    138     90     88
D31V6, multiclass
        clus
vv       SKI MUTATED SKI WILD-TYPE
  CLUS_1           3            77
  CLUS_2           3            87
  CLUS_3           0           177
  CLUS_4           0           138
  CLUS_5           0            90
  CLUS_6           3            88
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  SKI MUTATED        8      1      0
  SKI WILD-TYPE    206    147    296
D31V7, multiclass
        clus
vv       SKI MUTATED SKI WILD-TYPE
  CLUS_1           8           206
  CLUS_2           1           147
  CLUS_3           0           296
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  SKI MUTATED        3      4      2
  SKI WILD-TYPE     69    472    108
D31V8, multiclass
        clus
vv       SKI MUTATED SKI WILD-TYPE
  CLUS_1           3            69
  CLUS_2           4           472
  CLUS_3           2           108
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SKI MUTATED        1      2      3      0
  SKI WILD-TYPE     75     58     39     99
D31V9, multiclass
        clus
vv       SKI MUTATED SKI WILD-TYPE
  CLUS_1           1            75
  CLUS_2           2            58
  CLUS_3           3            39
  CLUS_4           0            99
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SKI MUTATED        0      1      4      0      1
  SKI WILD-TYPE     26     42     58    100     45
D31V10, multiclass
        clus
vv       SKI MUTATED SKI WILD-TYPE
  CLUS_1           0            26
  CLUS_2           1            42
  CLUS_3           4            58
  CLUS_4           0           100
  CLUS_5           1            45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(32) Variable = ARID1A MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID1A MUTATED        0      0      0      0
  ARID1A WILD-TYPE     21     17      9     14
D32V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARID1A MUTATED        0      0      0      0      0
  ARID1A WILD-TYPE     11     17     14     10      9
D32V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ARID1A MUTATED        5      6      8
  ARID1A WILD-TYPE    175    236    235
D32V3, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1              5              175
  CLUS_2              6              236
  CLUS_3              8              235
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ARID1A MUTATED        2      9      5
  ARID1A WILD-TYPE    101    246    114
D32V4, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1              2              101
  CLUS_2              9              246
  CLUS_3              5              114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID1A MUTATED        0      5      6      8
  ARID1A WILD-TYPE     98    169    239    141
D32V5, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1              0               98
  CLUS_2              5              169
  CLUS_3              6              239
  CLUS_4              8              141
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ARID1A MUTATED        0      4      3      4      4      4
  ARID1A WILD-TYPE     80     86    174    134     86     87
D32V6, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1              0               80
  CLUS_2              4               86
  CLUS_3              3              174
  CLUS_4              4              134
  CLUS_5              4               86
  CLUS_6              4               87
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ARID1A MUTATED        7      3      9
  ARID1A WILD-TYPE    207    145    287
D32V7, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1              7              207
  CLUS_2              3              145
  CLUS_3              9              287
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ARID1A MUTATED        0     15      4
  ARID1A WILD-TYPE     72    461    106
D32V8, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1              0               72
  CLUS_2             15              461
  CLUS_3              4              106
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID1A MUTATED        4      0      5      2
  ARID1A WILD-TYPE     72     60     37     97
D32V9, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1              4               72
  CLUS_2              0               60
  CLUS_3              5               37
  CLUS_4              2               97
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARID1A MUTATED        3      2      3      3      0
  ARID1A WILD-TYPE     23     41     59     97     46
D32V10, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1              3               23
  CLUS_2              2               41
  CLUS_3              3               59
  CLUS_4              3               97
  CLUS_5              0               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(33) Variable = EGFR MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EGFR MUTATED        0      0      0      0
  EGFR WILD-TYPE     21     17      9     14
D33V1, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EGFR MUTATED        0      0      0      0      0
  EGFR WILD-TYPE     11     17     14     10      9
D33V2, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EGFR MUTATED        0      3      4
  EGFR WILD-TYPE    180    239    239
D33V3, multiclass
        clus
vv       EGFR MUTATED EGFR WILD-TYPE
  CLUS_1            0            180
  CLUS_2            3            239
  CLUS_3            4            239
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EGFR MUTATED        0      4      0
  EGFR WILD-TYPE    103    251    119
D33V4, multiclass
        clus
vv       EGFR MUTATED EGFR WILD-TYPE
  CLUS_1            0            103
  CLUS_2            4            251
  CLUS_3            0            119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EGFR MUTATED        0      3      4      0
  EGFR WILD-TYPE     98    171    241    149
D33V5, multiclass
        clus
vv       EGFR MUTATED EGFR WILD-TYPE
  CLUS_1            0             98
  CLUS_2            3            171
  CLUS_3            4            241
  CLUS_4            0            149
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EGFR MUTATED        0      0      3      3      1      0
  EGFR WILD-TYPE     80     90    174    135     89     91
D33V6, multiclass
        clus
vv       EGFR MUTATED EGFR WILD-TYPE
  CLUS_1            0             80
  CLUS_2            0             90
  CLUS_3            3            174
  CLUS_4            3            135
  CLUS_5            1             89
  CLUS_6            0             91
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EGFR MUTATED        0      2      4
  EGFR WILD-TYPE    214    146    292
D33V7, multiclass
        clus
vv       EGFR MUTATED EGFR WILD-TYPE
  CLUS_1            0            214
  CLUS_2            2            146
  CLUS_3            4            292
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EGFR MUTATED        0      6      0
  EGFR WILD-TYPE     72    470    110
D33V8, multiclass
        clus
vv       EGFR MUTATED EGFR WILD-TYPE
  CLUS_1            0             72
  CLUS_2            6            470
  CLUS_3            0            110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EGFR MUTATED        0      0      0      0
  EGFR WILD-TYPE     76     60     42     99
D33V9, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EGFR MUTATED        0      0      0      0      0
  EGFR WILD-TYPE     26     43     62    100     46
D33V10, multiclass

Clustering(34) Variable = DPCR1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DPCR1 MUTATED        0      0      0      0
  DPCR1 WILD-TYPE     21     17      9     14
D34V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DPCR1 MUTATED        0      0      0      0      0
  DPCR1 WILD-TYPE     11     17     14     10      9
D34V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DPCR1 MUTATED        2      3      3
  DPCR1 WILD-TYPE    178    239    240
D34V3, multiclass
        clus
vv       DPCR1 MUTATED DPCR1 WILD-TYPE
  CLUS_1             2             178
  CLUS_2             3             239
  CLUS_3             3             240
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DPCR1 MUTATED        2      5      1
  DPCR1 WILD-TYPE    101    250    118
D34V4, multiclass
        clus
vv       DPCR1 MUTATED DPCR1 WILD-TYPE
  CLUS_1             2             101
  CLUS_2             5             250
  CLUS_3             1             118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DPCR1 MUTATED        2      2      3      1
  DPCR1 WILD-TYPE     96    172    242    148
D34V5, multiclass
        clus
vv       DPCR1 MUTATED DPCR1 WILD-TYPE
  CLUS_1             2              96
  CLUS_2             2             172
  CLUS_3             3             242
  CLUS_4             1             148
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DPCR1 MUTATED        1      1      2      3      0      1
  DPCR1 WILD-TYPE     79     89    175    135     90     90
D34V6, multiclass
        clus
vv       DPCR1 MUTATED DPCR1 WILD-TYPE
  CLUS_1             1              79
  CLUS_2             1              89
  CLUS_3             2             175
  CLUS_4             3             135
  CLUS_5             0              90
  CLUS_6             1              90
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DPCR1 MUTATED        2      2      4
  DPCR1 WILD-TYPE    212    146    292
D34V7, multiclass
        clus
vv       DPCR1 MUTATED DPCR1 WILD-TYPE
  CLUS_1             2             212
  CLUS_2             2             146
  CLUS_3             4             292
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DPCR1 MUTATED        1      6      1
  DPCR1 WILD-TYPE     71    470    109
D34V8, multiclass
        clus
vv       DPCR1 MUTATED DPCR1 WILD-TYPE
  CLUS_1             1              71
  CLUS_2             6             470
  CLUS_3             1             109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DPCR1 MUTATED        0      0      0      2
  DPCR1 WILD-TYPE     76     60     42     97
D34V9, multiclass
[1] "Remove cluster labels:" "DPCR1 MUTATED"         
clus
  DPCR1 MUTATED DPCR1 WILD-TYPE 
              2             275 
     TCGA-A3-3317      TCGA-A3-3358      TCGA-A3-3387      TCGA-A4-7286 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-A4-7287      TCGA-A4-7288      TCGA-A4-7585      TCGA-A4-7734 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-A4-7828      TCGA-A4-7915      TCGA-A4-7996      TCGA-A4-7997 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-A4-8098      TCGA-A4-8310      TCGA-A4-8312      TCGA-A4-8515 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-A4-8517      TCGA-A4-8518      TCGA-A4-8630      TCGA-A4-A57E 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-A4-A5XZ      TCGA-A4-A5Y0      TCGA-A4-A5Y1      TCGA-AK-3440 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AK-3458      TCGA-AK-3465      TCGA-AL-3466      TCGA-AL-3472 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AL-3473      TCGA-AL-7173      TCGA-AT-A5NU      TCGA-B0-4700 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-B0-4706      TCGA-B0-4710      TCGA-B0-4712      TCGA-B0-4810 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-B0-4811      TCGA-B0-4836      TCGA-B0-4837      TCGA-B0-4852 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-B0-5085      TCGA-B0-5088      TCGA-B0-5399      TCGA-B0-5691 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-B0-5692      TCGA-B0-5693      TCGA-B0-5694      TCGA-B0-5695 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-B0-5696      TCGA-B0-5699      TCGA-B0-5702      TCGA-B0-5705 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-B0-5709      TCGA-B1-5398      TCGA-B1-A47N      TCGA-B1-A654 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-B1-A656      TCGA-B1-A657      TCGA-B2-3923      TCGA-B2-3924 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-B2-5633      TCGA-B2-5635      TCGA-B3-3925      TCGA-B3-4104 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-B3-8121      TCGA-B4-5377      TCGA-B4-5836      TCGA-B8-4621 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-B8-5545      TCGA-B8-5550      TCGA-B8-5551      TCGA-B8-5552 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-B8-5553      TCGA-B9-4115      TCGA-B9-4117      TCGA-B9-5156 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-B9-A44B      TCGA-B9-A5W9      TCGA-B9-A69E      TCGA-BP-4173 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-BP-4340      TCGA-BP-4761      TCGA-BP-4770      TCGA-BP-4787 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-BP-4789      TCGA-BP-4790      TCGA-BP-4804      TCGA-BP-4807 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-BP-4961      TCGA-BP-4967      TCGA-BP-4968      TCGA-BP-4970 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-BP-4974      TCGA-BP-4976      TCGA-BP-4981      TCGA-BP-4982 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-BP-4985      TCGA-BP-4988      TCGA-BP-4989      TCGA-BP-4992 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-BP-4995      TCGA-BP-4998      TCGA-BP-5001      TCGA-BP-5008 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-BP-5009      TCGA-BQ-5876      TCGA-BQ-5877      TCGA-BQ-5878 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-BQ-5879      TCGA-BQ-5880      TCGA-BQ-5881      TCGA-BQ-5882 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-BQ-5883      TCGA-BQ-5884      TCGA-BQ-5886      TCGA-BQ-5887 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-BQ-5888      TCGA-BQ-5889      TCGA-BQ-5890      TCGA-BQ-5891 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-BQ-5892      TCGA-BQ-5893      TCGA-BQ-5894      TCGA-BQ-7044 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-BQ-7045      TCGA-BQ-7046      TCGA-BQ-7048      TCGA-BQ-7050 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-BQ-7051      TCGA-BQ-7053      TCGA-BQ-7055      TCGA-BQ-7058 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-BQ-7059      TCGA-BQ-7060      TCGA-BQ-7061      TCGA-BQ-7062 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-CJ-4870      TCGA-CJ-4875      TCGA-CJ-4876      TCGA-CJ-4878 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-CJ-4881      TCGA-CJ-4887      TCGA-CJ-4889      TCGA-CJ-4890 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-CJ-4895      TCGA-CJ-4900      TCGA-CJ-5671      TCGA-CJ-5675 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-CJ-5676      TCGA-CJ-5681      TCGA-CJ-5683      TCGA-CJ-5686 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-CJ-6031      TCGA-CJ-6032      TCGA-CW-5585      TCGA-CW-6087 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-CZ-4854      TCGA-CZ-4857      TCGA-CZ-4858      TCGA-CZ-5453 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-CZ-5454      TCGA-CZ-5455      TCGA-CZ-5457      TCGA-CZ-5459 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-CZ-5462      TCGA-CZ-5463      TCGA-CZ-5466      TCGA-CZ-5467 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-CZ-5469      TCGA-CZ-5470      TCGA-CZ-5989      TCGA-DV-5565 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-DV-5566      TCGA-DV-5569      TCGA-DW-5560      TCGA-DW-5561 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-DW-7834      TCGA-DW-7837      TCGA-DW-7838      TCGA-DW-7839 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-DW-7840      TCGA-DW-7842      TCGA-DZ-6131      TCGA-DZ-6132 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-DZ-6133      TCGA-DZ-6134      TCGA-DZ-6135      TCGA-EU-5904 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-EV-5901      TCGA-EV-5902      TCGA-EV-5903      TCGA-F9-A4JJ 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-G7-6789      TCGA-G7-6790      TCGA-G7-6792      TCGA-G7-6793 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-G7-6795      TCGA-G7-6796      TCGA-G7-7501      TCGA-G7-7502 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-G7-A4TM      TCGA-GL-6846      TCGA-GL-7773      TCGA-GL-7966 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-GL-8500      TCGA-GL-A4EM      TCGA-GL-A59T      TCGA-HE-7128 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-HE-7130      TCGA-HE-A5NJ      TCGA-IA-A40U      TCGA-IA-A40X 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-IA-A40Y      TCGA-IZ-8195      TCGA-IZ-8196      TCGA-IZ-A6M9 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-J7-6720      TCGA-J7-8537      TCGA-KL-8323      TCGA-KL-8324 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-KL-8327      TCGA-KL-8328      TCGA-KL-8331      TCGA-KL-8332 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-KL-8333      TCGA-KL-8334      TCGA-KL-8335      TCGA-KL-8336 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-KL-8338      TCGA-KL-8339      TCGA-KL-8340      TCGA-KL-8341 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-KL-8342      TCGA-KL-8343      TCGA-KL-8344      TCGA-KL-8345 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-KM-8438      TCGA-KM-8439      TCGA-KM-8441      TCGA-KM-8442 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-KM-8639      TCGA-KN-8418      TCGA-KN-8419      TCGA-KN-8422 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-KN-8423      TCGA-KN-8424      TCGA-KN-8426      TCGA-KN-8427 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-KN-8428      TCGA-KN-8429      TCGA-KN-8430      TCGA-KN-8431 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-KN-8432      TCGA-KN-8433      TCGA-KN-8434      TCGA-KN-8436 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-KN-8437      TCGA-KO-8404      TCGA-KO-8405      TCGA-KO-8408 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-KO-8409      TCGA-KO-8410      TCGA-KO-8413      TCGA-KO-8415 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-KO-8416      TCGA-KO-8417      TCGA-KV-A6GD      TCGA-KV-A6GE 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-P4-A5E6      TCGA-P4-A5E7      TCGA-P4-A5E8      TCGA-P4-A5EA 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-PJ-A5Z8      TCGA-PJ-A5Z9      TCGA-Q2-A5QZ 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DPCR1 MUTATED        0      0      0      2      0
  DPCR1 WILD-TYPE     26     43     62     98     46
D34V10, multiclass
[1] "Remove cluster labels:" "DPCR1 MUTATED"         
clus
  DPCR1 MUTATED DPCR1 WILD-TYPE 
              2             275 
     TCGA-A3-3317      TCGA-A3-3358      TCGA-A3-3387      TCGA-A4-7286 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-A4-7287      TCGA-A4-7288      TCGA-A4-7585      TCGA-A4-7734 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-A4-7828      TCGA-A4-7915      TCGA-A4-7996      TCGA-A4-7997 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-A4-8098      TCGA-A4-8310      TCGA-A4-8312      TCGA-A4-8515 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-A4-8517      TCGA-A4-8518      TCGA-A4-8630      TCGA-A4-A57E 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-A4-A5XZ      TCGA-A4-A5Y0      TCGA-A4-A5Y1      TCGA-AK-3440 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AK-3458      TCGA-AK-3465      TCGA-AL-3466      TCGA-AL-3472 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AL-3473      TCGA-AL-7173      TCGA-AT-A5NU      TCGA-B0-4700 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-B0-4706      TCGA-B0-4710      TCGA-B0-4712      TCGA-B0-4810 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-B0-4811      TCGA-B0-4836      TCGA-B0-4837      TCGA-B0-4852 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-B0-5085      TCGA-B0-5088      TCGA-B0-5399      TCGA-B0-5691 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-B0-5692      TCGA-B0-5693      TCGA-B0-5694      TCGA-B0-5695 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-B0-5696      TCGA-B0-5699      TCGA-B0-5702      TCGA-B0-5705 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-B0-5709      TCGA-B1-5398      TCGA-B1-A47N      TCGA-B1-A654 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-B1-A656      TCGA-B1-A657      TCGA-B2-3923      TCGA-B2-3924 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-B2-5633      TCGA-B2-5635      TCGA-B3-3925      TCGA-B3-4104 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-B3-8121      TCGA-B4-5377      TCGA-B4-5836      TCGA-B8-4621 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-B8-5545      TCGA-B8-5550      TCGA-B8-5551      TCGA-B8-5552 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-B8-5553      TCGA-B9-4115      TCGA-B9-4117      TCGA-B9-5156 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-B9-A44B      TCGA-B9-A5W9      TCGA-B9-A69E      TCGA-BP-4173 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-BP-4340      TCGA-BP-4761      TCGA-BP-4770      TCGA-BP-4787 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-BP-4789      TCGA-BP-4790      TCGA-BP-4804      TCGA-BP-4807 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-BP-4961      TCGA-BP-4967      TCGA-BP-4968      TCGA-BP-4970 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-BP-4974      TCGA-BP-4976      TCGA-BP-4981      TCGA-BP-4982 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-BP-4985      TCGA-BP-4988      TCGA-BP-4989      TCGA-BP-4992 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-BP-4995      TCGA-BP-4998      TCGA-BP-5001      TCGA-BP-5008 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-BP-5009      TCGA-BQ-5876      TCGA-BQ-5877      TCGA-BQ-5878 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-BQ-5879      TCGA-BQ-5880      TCGA-BQ-5881      TCGA-BQ-5882 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-BQ-5883      TCGA-BQ-5884      TCGA-BQ-5886      TCGA-BQ-5887 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-BQ-5888      TCGA-BQ-5889      TCGA-BQ-5890      TCGA-BQ-5891 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-BQ-5892      TCGA-BQ-5893      TCGA-BQ-5894      TCGA-BQ-7044 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-BQ-7045      TCGA-BQ-7046      TCGA-BQ-7048      TCGA-BQ-7050 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-BQ-7051      TCGA-BQ-7053      TCGA-BQ-7055      TCGA-BQ-7058 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-BQ-7059      TCGA-BQ-7060      TCGA-BQ-7061      TCGA-BQ-7062 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-CJ-4870      TCGA-CJ-4875      TCGA-CJ-4876      TCGA-CJ-4878 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-CJ-4881      TCGA-CJ-4887      TCGA-CJ-4889      TCGA-CJ-4890 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-CJ-4895      TCGA-CJ-4900      TCGA-CJ-5671      TCGA-CJ-5675 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-CJ-5676      TCGA-CJ-5681      TCGA-CJ-5683      TCGA-CJ-5686 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-CJ-6031      TCGA-CJ-6032      TCGA-CW-5585      TCGA-CW-6087 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-CZ-4854      TCGA-CZ-4857      TCGA-CZ-4858      TCGA-CZ-5453 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-CZ-5454      TCGA-CZ-5455      TCGA-CZ-5457      TCGA-CZ-5459 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-CZ-5462      TCGA-CZ-5463      TCGA-CZ-5466      TCGA-CZ-5467 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-CZ-5469      TCGA-CZ-5470      TCGA-CZ-5989      TCGA-DV-5565 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-DV-5566      TCGA-DV-5569      TCGA-DW-5560      TCGA-DW-5561 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-DW-7834      TCGA-DW-7837      TCGA-DW-7838      TCGA-DW-7839 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-DW-7840      TCGA-DW-7842      TCGA-DZ-6131      TCGA-DZ-6132 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-DZ-6133      TCGA-DZ-6134      TCGA-DZ-6135      TCGA-EU-5904 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-EV-5901      TCGA-EV-5902      TCGA-EV-5903      TCGA-F9-A4JJ 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-G7-6789      TCGA-G7-6790      TCGA-G7-6792      TCGA-G7-6793 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-G7-6795      TCGA-G7-6796      TCGA-G7-7501      TCGA-G7-7502 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-G7-A4TM      TCGA-GL-6846      TCGA-GL-7773      TCGA-GL-7966 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-GL-8500      TCGA-GL-A4EM      TCGA-GL-A59T      TCGA-HE-7128 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-HE-7130      TCGA-HE-A5NJ      TCGA-IA-A40U      TCGA-IA-A40X 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-IA-A40Y      TCGA-IZ-8195      TCGA-IZ-8196      TCGA-IZ-A6M9 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-J7-6720      TCGA-J7-8537      TCGA-KL-8323      TCGA-KL-8324 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-KL-8327      TCGA-KL-8328      TCGA-KL-8331      TCGA-KL-8332 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-KL-8333      TCGA-KL-8334      TCGA-KL-8335      TCGA-KL-8336 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-KL-8338      TCGA-KL-8339      TCGA-KL-8340      TCGA-KL-8341 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-KL-8342      TCGA-KL-8343      TCGA-KL-8344      TCGA-KL-8345 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-KM-8438      TCGA-KM-8439      TCGA-KM-8441      TCGA-KM-8442 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-KM-8639      TCGA-KN-8418      TCGA-KN-8419      TCGA-KN-8422 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-KN-8423      TCGA-KN-8424      TCGA-KN-8426      TCGA-KN-8427 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-KN-8428      TCGA-KN-8429      TCGA-KN-8430      TCGA-KN-8431 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-KN-8432      TCGA-KN-8433      TCGA-KN-8434      TCGA-KN-8436 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-KN-8437      TCGA-KO-8404      TCGA-KO-8405      TCGA-KO-8408 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-KO-8409      TCGA-KO-8410      TCGA-KO-8413      TCGA-KO-8415 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-KO-8416      TCGA-KO-8417      TCGA-KV-A6GD      TCGA-KV-A6GE 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-P4-A5E6      TCGA-P4-A5E7      TCGA-P4-A5E8      TCGA-P4-A5EA 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-PJ-A5Z8      TCGA-PJ-A5Z9      TCGA-Q2-A5QZ 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 

Clustering(35) Variable = GUSB MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GUSB MUTATED        0      0      0      0
  GUSB WILD-TYPE     21     17      9     14
D35V1, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GUSB MUTATED        0      0      0      0      0
  GUSB WILD-TYPE     11     17     14     10      9
D35V2, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GUSB MUTATED        0      3      1
  GUSB WILD-TYPE    180    239    242
D35V3, multiclass
        clus
vv       GUSB MUTATED GUSB WILD-TYPE
  CLUS_1            0            180
  CLUS_2            3            239
  CLUS_3            1            242
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GUSB MUTATED        0      2      0
  GUSB WILD-TYPE    103    253    119
D35V4, multiclass
[1] "Remove cluster labels:" "GUSB MUTATED"          
clus
  GUSB MUTATED GUSB WILD-TYPE 
             2            475 
    TCGA-A3-3357     TCGA-A3-3358     TCGA-A3-3367     TCGA-A3-3370 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-A3-3373     TCGA-A3-3376     TCGA-A3-3385     TCGA-A3-3387 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-A4-7286     TCGA-A4-7287     TCGA-A4-7288     TCGA-A4-7583 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-A4-7584     TCGA-A4-7585     TCGA-A4-7732     TCGA-A4-7734 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-A4-7828     TCGA-A4-7915     TCGA-A4-7996     TCGA-A4-7997 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-A4-8098     TCGA-A4-8310     TCGA-A4-8311     TCGA-A4-8312 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-A4-8515     TCGA-A4-8517     TCGA-A4-8518     TCGA-A4-8630 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-A4-A48D     TCGA-A4-A4ZT     TCGA-A4-A57E     TCGA-A4-A5DU 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-A4-A5XZ     TCGA-A4-A5Y0     TCGA-A4-A5Y1     TCGA-A4-A6HP 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-AK-3425     TCGA-AK-3428     TCGA-AK-3431     TCGA-AK-3434 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-AK-3440     TCGA-AK-3445     TCGA-AK-3450     TCGA-AK-3453 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-AK-3454     TCGA-AK-3458     TCGA-AK-3460     TCGA-AK-3461 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-AL-7173     TCGA-AT-A5NU     TCGA-B0-4690     TCGA-B0-4691 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-B0-4693     TCGA-B0-4694     TCGA-B0-4697     TCGA-B0-4700 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-B0-4703     TCGA-B0-4706     TCGA-B0-4707     TCGA-B0-4710 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-B0-4712     TCGA-B0-4713     TCGA-B0-4714     TCGA-B0-4718 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-B0-4810     TCGA-B0-4811     TCGA-B0-4813     TCGA-B0-4814 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-B0-4815     TCGA-B0-4816     TCGA-B0-4817     TCGA-B0-4818 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-B0-4819     TCGA-B0-4822     TCGA-B0-4823     TCGA-B0-4824 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-B0-4827     TCGA-B0-4828     TCGA-B0-4841     TCGA-B0-4842 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-B0-4843     TCGA-B0-4844     TCGA-B0-4845     TCGA-B0-4846 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-B0-4847     TCGA-B0-4848     TCGA-B0-4849     TCGA-B0-4852 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-B0-4945     TCGA-B0-5080     TCGA-B0-5083     TCGA-B0-5092 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-B0-5094     TCGA-B0-5096     TCGA-B0-5097     TCGA-B0-5098 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-B0-5099     TCGA-B0-5100     TCGA-B0-5102     TCGA-B0-5104 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-B0-5106     TCGA-B0-5107     TCGA-B0-5108     TCGA-B0-5109 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-B0-5110     TCGA-B0-5113     TCGA-B0-5115     TCGA-B0-5116 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-B0-5117     TCGA-B0-5119     TCGA-B0-5120     TCGA-B0-5121 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-B0-5399     TCGA-B0-5400     TCGA-B0-5402     TCGA-B0-5691 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-B0-5692     TCGA-B0-5693     TCGA-B0-5694     TCGA-B0-5695 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-B0-5696     TCGA-B0-5697     TCGA-B0-5698     TCGA-B0-5699 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-B0-5701     TCGA-B0-5702     TCGA-B0-5703     TCGA-B0-5705 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-B0-5706     TCGA-B0-5707     TCGA-B0-5709     TCGA-B0-5710 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-B0-5711     TCGA-B0-5712     TCGA-B0-5713     TCGA-B0-5812 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-B1-5398     TCGA-B1-A47M     TCGA-B1-A47N     TCGA-B1-A654 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-B1-A655     TCGA-B1-A656     TCGA-B1-A657     TCGA-B2-3924 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-B2-4101     TCGA-B2-5633     TCGA-B2-5635     TCGA-B2-5641 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-B3-8121     TCGA-B4-5377     TCGA-B4-5832     TCGA-B4-5834 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-B4-5835     TCGA-B4-5836     TCGA-B4-5838     TCGA-B4-5843 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-B4-5844     TCGA-B8-4146     TCGA-B8-4153     TCGA-B8-4621 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-B8-4622     TCGA-B8-5158     TCGA-B8-5159     TCGA-B8-5162 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-B8-5163     TCGA-B8-5164     TCGA-B8-5165     TCGA-B8-5545 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-B8-5546     TCGA-B8-5549     TCGA-B8-5550     TCGA-B8-5551 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-B8-5552     TCGA-B8-5553     TCGA-B9-5156     TCGA-B9-7268 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-B9-A44B     TCGA-B9-A5W7     TCGA-B9-A5W8     TCGA-B9-A5W9 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-B9-A69E     TCGA-BP-4177     TCGA-BP-4760     TCGA-BP-4770 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-BP-4782     TCGA-BP-4795     TCGA-BP-4801     TCGA-BP-4993 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-BP-5010     TCGA-BP-5168     TCGA-BP-5169     TCGA-BP-5170 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-BP-5173     TCGA-BP-5174     TCGA-BP-5175     TCGA-BP-5176 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-BP-5177     TCGA-BP-5178     TCGA-BP-5180     TCGA-BP-5181 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-BP-5182     TCGA-BP-5183     TCGA-BP-5184     TCGA-BP-5185 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-BP-5186     TCGA-BP-5187     TCGA-BP-5189     TCGA-BP-5190 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-BP-5191     TCGA-BP-5192     TCGA-BP-5194     TCGA-BP-5195 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-BP-5196     TCGA-BP-5198     TCGA-BP-5199     TCGA-BP-5200 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-BP-5201     TCGA-BP-5202     TCGA-BQ-5875     TCGA-BQ-5876 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-BQ-5877     TCGA-BQ-5878     TCGA-BQ-5879     TCGA-BQ-5880 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-BQ-5881     TCGA-BQ-5882     TCGA-BQ-5883     TCGA-BQ-5884 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-BQ-5885     TCGA-BQ-5886     TCGA-BQ-5887     TCGA-BQ-5888 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-BQ-5889     TCGA-BQ-5890     TCGA-BQ-5891     TCGA-BQ-5892 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-BQ-5893     TCGA-BQ-5894     TCGA-BQ-7044     TCGA-BQ-7045 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-BQ-7046     TCGA-BQ-7048     TCGA-BQ-7050     TCGA-BQ-7051 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-BQ-7053     TCGA-BQ-7055     TCGA-BQ-7058     TCGA-BQ-7059 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-BQ-7060     TCGA-BQ-7061     TCGA-BQ-7062     TCGA-CJ-4869 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-CJ-4882     TCGA-CJ-4897     TCGA-CJ-4901     TCGA-CJ-4903 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-CJ-4904     TCGA-CJ-4905     TCGA-CJ-4907     TCGA-CJ-4908 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-CJ-4912     TCGA-CJ-4913     TCGA-CJ-4916     TCGA-CJ-4918 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-CJ-4920     TCGA-CJ-4923     TCGA-CJ-5671     TCGA-CJ-5672 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-CJ-5675     TCGA-CJ-5676     TCGA-CJ-5677     TCGA-CJ-5678 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-CJ-5679     TCGA-CJ-5680     TCGA-CJ-5681     TCGA-CJ-5682 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-CJ-5683     TCGA-CJ-5684     TCGA-CJ-5686     TCGA-CJ-6027 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-CJ-6028     TCGA-CJ-6030     TCGA-CJ-6031     TCGA-CJ-6032 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-CJ-6033     TCGA-CW-5580     TCGA-CW-5581     TCGA-CW-5583 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-CW-5585     TCGA-CW-5588     TCGA-CW-5589     TCGA-CW-5591 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-CW-6087     TCGA-CW-6090     TCGA-CW-6093     TCGA-CW-6097 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-CZ-4853     TCGA-CZ-4856     TCGA-CZ-4859     TCGA-CZ-4863 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-CZ-4865     TCGA-CZ-4866     TCGA-CZ-5451     TCGA-CZ-5452 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-CZ-5453     TCGA-CZ-5454     TCGA-CZ-5455     TCGA-CZ-5456 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-CZ-5457     TCGA-CZ-5458     TCGA-CZ-5459     TCGA-CZ-5460 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-CZ-5461     TCGA-CZ-5462     TCGA-CZ-5463     TCGA-CZ-5465 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-CZ-5466     TCGA-CZ-5467     TCGA-CZ-5468     TCGA-CZ-5469 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-CZ-5470     TCGA-CZ-5982     TCGA-CZ-5984     TCGA-CZ-5985 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-CZ-5986     TCGA-CZ-5987     TCGA-CZ-5988     TCGA-CZ-5989 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-DV-5565     TCGA-DV-5566     TCGA-DV-5568     TCGA-DV-5569 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-DV-5574     TCGA-DV-5575     TCGA-DV-5576     TCGA-DW-5560 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-DW-5561     TCGA-DW-7834     TCGA-DW-7837     TCGA-DW-7838 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-DW-7839     TCGA-DW-7840     TCGA-DW-7841     TCGA-DW-7842 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-DW-7963     TCGA-DZ-6131     TCGA-DZ-6132     TCGA-DZ-6133 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-DZ-6134     TCGA-DZ-6135     TCGA-EU-5904     TCGA-EU-5905 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-EU-5906     TCGA-EU-5907     TCGA-EV-5901     TCGA-EV-5902 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-EV-5903     TCGA-F9-A4JJ     TCGA-G7-6789     TCGA-G7-6790 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-G7-6792     TCGA-G7-6793     TCGA-G7-6795     TCGA-G7-6796 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-G7-6797     TCGA-G7-7501     TCGA-G7-7502     TCGA-G7-A4TM 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-GL-6846     TCGA-GL-7773     TCGA-GL-7966     TCGA-GL-8500 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-GL-A4EM     TCGA-GL-A59R     TCGA-GL-A59T     TCGA-HE-7128 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-HE-7129     TCGA-HE-7130     TCGA-HE-A5NF     TCGA-HE-A5NH 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-HE-A5NI     TCGA-HE-A5NJ     TCGA-HE-A5NK     TCGA-HE-A5NL 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-IA-A40U     TCGA-IA-A40X     TCGA-IA-A40Y     TCGA-IZ-8195 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-IZ-8196     TCGA-IZ-A6M8     TCGA-IZ-A6M9     TCGA-J7-6720 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-J7-8537     TCGA-KL-8323     TCGA-KL-8324     TCGA-KL-8325 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-KL-8326     TCGA-KL-8327     TCGA-KL-8328     TCGA-KL-8329 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-KL-8330     TCGA-KL-8331     TCGA-KL-8332     TCGA-KL-8333 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-KL-8334     TCGA-KL-8335     TCGA-KL-8336     TCGA-KL-8337 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-KL-8338     TCGA-KL-8339     TCGA-KL-8340     TCGA-KL-8341 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-KL-8342     TCGA-KL-8343     TCGA-KL-8344     TCGA-KL-8345 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-KL-8346     TCGA-KM-8438     TCGA-KM-8439     TCGA-KM-8440 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-KM-8441     TCGA-KM-8442     TCGA-KM-8443     TCGA-KM-8476 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-KM-8477     TCGA-KM-8639     TCGA-KN-8418     TCGA-KN-8419 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-KN-8421     TCGA-KN-8422     TCGA-KN-8423     TCGA-KN-8424 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-KN-8425     TCGA-KN-8426     TCGA-KN-8427     TCGA-KN-8428 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-KN-8429     TCGA-KN-8430     TCGA-KN-8431     TCGA-KN-8432 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-KN-8433     TCGA-KN-8434     TCGA-KN-8435     TCGA-KN-8436 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-KN-8437     TCGA-KO-8403     TCGA-KO-8404     TCGA-KO-8405 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-KO-8406     TCGA-KO-8407     TCGA-KO-8408     TCGA-KO-8409 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-KO-8410     TCGA-KO-8411     TCGA-KO-8413     TCGA-KO-8414 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-KO-8415     TCGA-KO-8416     TCGA-KO-8417     TCGA-KV-A6GD 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-KV-A6GE     TCGA-MH-A55W     TCGA-MH-A55Z     TCGA-MH-A560 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-MH-A561     TCGA-MH-A562     TCGA-P4-A5E6     TCGA-P4-A5E7 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-P4-A5E8     TCGA-P4-A5EA     TCGA-P4-A5EB     TCGA-P4-A5ED 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
    TCGA-PJ-A5Z8     TCGA-PJ-A5Z9     TCGA-Q2-A5QZ 
"GUSB WILD-TYPE" "GUSB WILD-TYPE" "GUSB WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GUSB MUTATED        0      2      2      0
  GUSB WILD-TYPE     98    172    243    149
D35V5, multiclass
        clus
vv       GUSB MUTATED GUSB WILD-TYPE
  CLUS_1            0             98
  CLUS_2            2            172
  CLUS_3            2            243
  CLUS_4            0            149
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GUSB MUTATED        0      0      1      3      0      0
  GUSB WILD-TYPE     80     90    176    135     90     91
D35V6, multiclass
        clus
vv       GUSB MUTATED GUSB WILD-TYPE
  CLUS_1            0             80
  CLUS_2            0             90
  CLUS_3            1            176
  CLUS_4            3            135
  CLUS_5            0             90
  CLUS_6            0             91
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GUSB MUTATED        0      1      3
  GUSB WILD-TYPE    214    147    293
D35V7, multiclass
        clus
vv       GUSB MUTATED GUSB WILD-TYPE
  CLUS_1            0            214
  CLUS_2            1            147
  CLUS_3            3            293
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GUSB MUTATED        0      4      0
  GUSB WILD-TYPE     72    472    110
D35V8, multiclass
        clus
vv       GUSB MUTATED GUSB WILD-TYPE
  CLUS_1            0             72
  CLUS_2            4            472
  CLUS_3            0            110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GUSB MUTATED        0      0      0      0
  GUSB WILD-TYPE     76     60     42     99
D35V9, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GUSB MUTATED        0      0      0      0      0
  GUSB WILD-TYPE     26     43     62    100     46
D35V10, multiclass

Clustering(36) Variable = MED16 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MED16 MUTATED        0      0      0      0
  MED16 WILD-TYPE     21     17      9     14
D36V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MED16 MUTATED        0      0      0      0      0
  MED16 WILD-TYPE     11     17     14     10      9
D36V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MED16 MUTATED        0      1      3
  MED16 WILD-TYPE    180    241    240
D36V3, multiclass
        clus
vv       MED16 MUTATED MED16 WILD-TYPE
  CLUS_1             0             180
  CLUS_2             1             241
  CLUS_3             3             240
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MED16 MUTATED        1      1      2
  MED16 WILD-TYPE    102    254    117
D36V4, multiclass
        clus
vv       MED16 MUTATED MED16 WILD-TYPE
  CLUS_1             1             102
  CLUS_2             1             254
  CLUS_3             2             117
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MED16 MUTATED        1      1      1      1
  MED16 WILD-TYPE     97    173    244    148
D36V5, multiclass
        clus
vv       MED16 MUTATED MED16 WILD-TYPE
  CLUS_1             1              97
  CLUS_2             1             173
  CLUS_3             1             244
  CLUS_4             1             148
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MED16 MUTATED        0      3      1      0      0      0
  MED16 WILD-TYPE     80     87    176    138     90     91
D36V6, multiclass
        clus
vv       MED16 MUTATED MED16 WILD-TYPE
  CLUS_1             0              80
  CLUS_2             3              87
  CLUS_3             1             176
  CLUS_4             0             138
  CLUS_5             0              90
  CLUS_6             0              91
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MED16 MUTATED        2      1      1
  MED16 WILD-TYPE    212    147    295
D36V7, multiclass
        clus
vv       MED16 MUTATED MED16 WILD-TYPE
  CLUS_1             2             212
  CLUS_2             1             147
  CLUS_3             1             295
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MED16 MUTATED        0      4      0
  MED16 WILD-TYPE     72    472    110
D36V8, multiclass
        clus
vv       MED16 MUTATED MED16 WILD-TYPE
  CLUS_1             0              72
  CLUS_2             4             472
  CLUS_3             0             110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MED16 MUTATED        1      1      1      0
  MED16 WILD-TYPE     75     59     41     99
D36V9, multiclass
        clus
vv       MED16 MUTATED MED16 WILD-TYPE
  CLUS_1             1              75
  CLUS_2             1              59
  CLUS_3             1              41
  CLUS_4             0              99
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MED16 MUTATED        0      1      2      0      0
  MED16 WILD-TYPE     26     42     60    100     46
D36V10, multiclass
        clus
vv       MED16 MUTATED MED16 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             1              42
  CLUS_3             2              60
  CLUS_4             0             100
  CLUS_5             0              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(37) Variable = PTCH1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTCH1 MUTATED        0      0      0      0
  PTCH1 WILD-TYPE     21     17      9     14
D37V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTCH1 MUTATED        0      0      0      0      0
  PTCH1 WILD-TYPE     11     17     14     10      9
D37V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PTCH1 MUTATED        1      3      4
  PTCH1 WILD-TYPE    179    239    239
D37V3, multiclass
        clus
vv       PTCH1 MUTATED PTCH1 WILD-TYPE
  CLUS_1             1             179
  CLUS_2             3             239
  CLUS_3             4             239
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PTCH1 MUTATED        0      4      1
  PTCH1 WILD-TYPE    103    251    118
D37V4, multiclass
        clus
vv       PTCH1 MUTATED PTCH1 WILD-TYPE
  CLUS_1             0             103
  CLUS_2             4             251
  CLUS_3             1             118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTCH1 MUTATED        0      2      5      1
  PTCH1 WILD-TYPE     98    172    240    148
D37V5, multiclass
        clus
vv       PTCH1 MUTATED PTCH1 WILD-TYPE
  CLUS_1             0              98
  CLUS_2             2             172
  CLUS_3             5             240
  CLUS_4             1             148
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PTCH1 MUTATED        0      0      5      2      0      1
  PTCH1 WILD-TYPE     80     90    172    136     90     90
D37V6, multiclass
        clus
vv       PTCH1 MUTATED PTCH1 WILD-TYPE
  CLUS_1             0              80
  CLUS_2             0              90
  CLUS_3             5             172
  CLUS_4             2             136
  CLUS_5             0              90
  CLUS_6             1              90
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PTCH1 MUTATED        1      1      6
  PTCH1 WILD-TYPE    213    147    290
D37V7, multiclass
        clus
vv       PTCH1 MUTATED PTCH1 WILD-TYPE
  CLUS_1             1             213
  CLUS_2             1             147
  CLUS_3             6             290
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PTCH1 MUTATED        0      7      1
  PTCH1 WILD-TYPE     72    469    109
D37V8, multiclass
        clus
vv       PTCH1 MUTATED PTCH1 WILD-TYPE
  CLUS_1             0              72
  CLUS_2             7             469
  CLUS_3             1             109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTCH1 MUTATED        0      0      0      0
  PTCH1 WILD-TYPE     76     60     42     99
D37V9, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTCH1 MUTATED        0      0      0      0      0
  PTCH1 WILD-TYPE     26     43     62    100     46
D37V10, multiclass

Clustering(38) Variable = AHNAK2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AHNAK2 MUTATED        3      0      0      2
  AHNAK2 WILD-TYPE     18     17      9     12
D38V1, multiclass
        clus
vv       AHNAK2 MUTATED AHNAK2 WILD-TYPE
  CLUS_1              3               18
  CLUS_2              0               17
  CLUS_3              0                9
  CLUS_4              2               12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AHNAK2 MUTATED        0      0      2      3      0
  AHNAK2 WILD-TYPE     11     17     12      7      9
D38V2, multiclass
        clus
vv       AHNAK2 MUTATED AHNAK2 WILD-TYPE
  CLUS_1              0               11
  CLUS_2              0               17
  CLUS_3              2               12
  CLUS_4              3                7
  CLUS_5              0                9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  AHNAK2 MUTATED       10      9     14
  AHNAK2 WILD-TYPE    170    233    229
D38V3, multiclass
        clus
vv       AHNAK2 MUTATED AHNAK2 WILD-TYPE
  CLUS_1             10              170
  CLUS_2              9              233
  CLUS_3             14              229
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  AHNAK2 MUTATED       11     10      4
  AHNAK2 WILD-TYPE     92    245    115
D38V4, multiclass
        clus
vv       AHNAK2 MUTATED AHNAK2 WILD-TYPE
  CLUS_1             11               92
  CLUS_2             10              245
  CLUS_3              4              115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AHNAK2 MUTATED       10      2     12      9
  AHNAK2 WILD-TYPE     88    172    233    140
D38V5, multiclass
        clus
vv       AHNAK2 MUTATED AHNAK2 WILD-TYPE
  CLUS_1             10               88
  CLUS_2              2              172
  CLUS_3             12              233
  CLUS_4              9              140
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AHNAK2 MUTATED       10      6      4      1      8      4
  AHNAK2 WILD-TYPE     70     84    173    137     82     87
D38V6, multiclass
        clus
vv       AHNAK2 MUTATED AHNAK2 WILD-TYPE
  CLUS_1             10               70
  CLUS_2              6               84
  CLUS_3              4              173
  CLUS_4              1              137
  CLUS_5              8               82
  CLUS_6              4               87
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  AHNAK2 MUTATED       18      3     12
  AHNAK2 WILD-TYPE    196    145    284
D38V7, multiclass
        clus
vv       AHNAK2 MUTATED AHNAK2 WILD-TYPE
  CLUS_1             18              196
  CLUS_2              3              145
  CLUS_3             12              284
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  AHNAK2 MUTATED        9     17      7
  AHNAK2 WILD-TYPE     63    459    103
D38V8, multiclass
        clus
vv       AHNAK2 MUTATED AHNAK2 WILD-TYPE
  CLUS_1              9               63
  CLUS_2             17              459
  CLUS_3              7              103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AHNAK2 MUTATED        5      5      2      4
  AHNAK2 WILD-TYPE     71     55     40     95
D38V9, multiclass
        clus
vv       AHNAK2 MUTATED AHNAK2 WILD-TYPE
  CLUS_1              5               71
  CLUS_2              5               55
  CLUS_3              2               40
  CLUS_4              4               95
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AHNAK2 MUTATED        1      4      3      3      5
  AHNAK2 WILD-TYPE     25     39     59     97     41
D38V10, multiclass
        clus
vv       AHNAK2 MUTATED AHNAK2 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              4               39
  CLUS_3              3               59
  CLUS_4              3               97
  CLUS_5              5               41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(39) Variable = RLIM MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RLIM MUTATED        0      1      1      0
  RLIM WILD-TYPE     21     16      8     14
D39V1, multiclass
[1] "Remove cluster labels:" "RLIM MUTATED"          
clus
  RLIM MUTATED RLIM WILD-TYPE 
             2             59 
    TCGA-A3-3311     TCGA-A3-3316     TCGA-A3-3317     TCGA-A3-3322 
"RLIM WILD-TYPE" "RLIM WILD-TYPE" "RLIM WILD-TYPE" "RLIM WILD-TYPE" 
    TCGA-A3-3323     TCGA-A3-3326     TCGA-A3-3331     TCGA-A3-3347 
"RLIM WILD-TYPE" "RLIM WILD-TYPE" "RLIM WILD-TYPE" "RLIM WILD-TYPE" 
    TCGA-A3-3349     TCGA-A3-3362     TCGA-A3-3363     TCGA-A3-3365 
"RLIM WILD-TYPE" "RLIM WILD-TYPE" "RLIM WILD-TYPE" "RLIM WILD-TYPE" 
    TCGA-A3-3374     TCGA-A3-3380     TCGA-A3-3383     TCGA-AK-3427 
"RLIM WILD-TYPE" "RLIM WILD-TYPE" "RLIM WILD-TYPE" "RLIM WILD-TYPE" 
    TCGA-AK-3440     TCGA-AK-3443     TCGA-AK-3455     TCGA-AK-3456 
"RLIM WILD-TYPE" "RLIM WILD-TYPE" "RLIM WILD-TYPE" "RLIM WILD-TYPE" 
    TCGA-AK-3465     TCGA-AL-3466     TCGA-AL-3467     TCGA-AL-3472 
"RLIM WILD-TYPE" "RLIM WILD-TYPE" "RLIM WILD-TYPE" "RLIM WILD-TYPE" 
    TCGA-AS-3777     TCGA-AS-3778     TCGA-B2-3923     TCGA-B2-3924 
"RLIM WILD-TYPE" "RLIM WILD-TYPE" "RLIM WILD-TYPE" "RLIM WILD-TYPE" 
    TCGA-B2-4098     TCGA-B2-4099     TCGA-B3-3925     TCGA-B3-3926 
"RLIM WILD-TYPE" "RLIM WILD-TYPE" "RLIM WILD-TYPE" "RLIM WILD-TYPE" 
    TCGA-B3-4103     TCGA-B3-4104     TCGA-B8-4143     TCGA-B8-4148 
"RLIM WILD-TYPE" "RLIM WILD-TYPE" "RLIM WILD-TYPE" "RLIM WILD-TYPE" 
    TCGA-B8-4151     TCGA-B8-4154     TCGA-B8-4619     TCGA-B8-4620 
"RLIM WILD-TYPE" "RLIM WILD-TYPE" "RLIM WILD-TYPE" "RLIM WILD-TYPE" 
    TCGA-B9-4113     TCGA-B9-4114     TCGA-B9-4115     TCGA-B9-4116 
"RLIM WILD-TYPE" "RLIM WILD-TYPE" "RLIM WILD-TYPE" "RLIM WILD-TYPE" 
    TCGA-B9-4117     TCGA-BP-4161     TCGA-BP-4162     TCGA-BP-4163 
"RLIM WILD-TYPE" "RLIM WILD-TYPE" "RLIM WILD-TYPE" "RLIM WILD-TYPE" 
    TCGA-BP-4164     TCGA-BP-4167     TCGA-CJ-4634     TCGA-CJ-4636 
"RLIM WILD-TYPE" "RLIM WILD-TYPE" "RLIM WILD-TYPE" "RLIM WILD-TYPE" 
    TCGA-CJ-4637     TCGA-CJ-4638     TCGA-CJ-4639     TCGA-CJ-4640 
"RLIM WILD-TYPE" "RLIM WILD-TYPE" "RLIM WILD-TYPE" "RLIM WILD-TYPE" 
    TCGA-CJ-4641     TCGA-CJ-4643     TCGA-CJ-4644 
"RLIM WILD-TYPE" "RLIM WILD-TYPE" "RLIM WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RLIM MUTATED        0      1      0      0      1
  RLIM WILD-TYPE     11     16     14     10      8
D39V2, multiclass
[1] "Remove cluster labels:" "RLIM MUTATED"          
clus
  RLIM MUTATED RLIM WILD-TYPE 
             2             59 
    TCGA-A3-3311     TCGA-A3-3316     TCGA-A3-3317     TCGA-A3-3322 
"RLIM WILD-TYPE" "RLIM WILD-TYPE" "RLIM WILD-TYPE" "RLIM WILD-TYPE" 
    TCGA-A3-3323     TCGA-A3-3326     TCGA-A3-3331     TCGA-A3-3347 
"RLIM WILD-TYPE" "RLIM WILD-TYPE" "RLIM WILD-TYPE" "RLIM WILD-TYPE" 
    TCGA-A3-3349     TCGA-A3-3362     TCGA-A3-3363     TCGA-A3-3365 
"RLIM WILD-TYPE" "RLIM WILD-TYPE" "RLIM WILD-TYPE" "RLIM WILD-TYPE" 
    TCGA-A3-3374     TCGA-A3-3380     TCGA-A3-3383     TCGA-AK-3427 
"RLIM WILD-TYPE" "RLIM WILD-TYPE" "RLIM WILD-TYPE" "RLIM WILD-TYPE" 
    TCGA-AK-3440     TCGA-AK-3443     TCGA-AK-3455     TCGA-AK-3456 
"RLIM WILD-TYPE" "RLIM WILD-TYPE" "RLIM WILD-TYPE" "RLIM WILD-TYPE" 
    TCGA-AK-3465     TCGA-AL-3466     TCGA-AL-3467     TCGA-AL-3472 
"RLIM WILD-TYPE" "RLIM WILD-TYPE" "RLIM WILD-TYPE" "RLIM WILD-TYPE" 
    TCGA-AS-3777     TCGA-AS-3778     TCGA-B2-3923     TCGA-B2-3924 
"RLIM WILD-TYPE" "RLIM WILD-TYPE" "RLIM WILD-TYPE" "RLIM WILD-TYPE" 
    TCGA-B2-4098     TCGA-B2-4099     TCGA-B3-3925     TCGA-B3-3926 
"RLIM WILD-TYPE" "RLIM WILD-TYPE" "RLIM WILD-TYPE" "RLIM WILD-TYPE" 
    TCGA-B3-4103     TCGA-B3-4104     TCGA-B8-4143     TCGA-B8-4148 
"RLIM WILD-TYPE" "RLIM WILD-TYPE" "RLIM WILD-TYPE" "RLIM WILD-TYPE" 
    TCGA-B8-4151     TCGA-B8-4154     TCGA-B8-4619     TCGA-B8-4620 
"RLIM WILD-TYPE" "RLIM WILD-TYPE" "RLIM WILD-TYPE" "RLIM WILD-TYPE" 
    TCGA-B9-4113     TCGA-B9-4114     TCGA-B9-4115     TCGA-B9-4116 
"RLIM WILD-TYPE" "RLIM WILD-TYPE" "RLIM WILD-TYPE" "RLIM WILD-TYPE" 
    TCGA-B9-4117     TCGA-BP-4161     TCGA-BP-4162     TCGA-BP-4163 
"RLIM WILD-TYPE" "RLIM WILD-TYPE" "RLIM WILD-TYPE" "RLIM WILD-TYPE" 
    TCGA-BP-4164     TCGA-BP-4167     TCGA-CJ-4634     TCGA-CJ-4636 
"RLIM WILD-TYPE" "RLIM WILD-TYPE" "RLIM WILD-TYPE" "RLIM WILD-TYPE" 
    TCGA-CJ-4637     TCGA-CJ-4638     TCGA-CJ-4639     TCGA-CJ-4640 
"RLIM WILD-TYPE" "RLIM WILD-TYPE" "RLIM WILD-TYPE" "RLIM WILD-TYPE" 
    TCGA-CJ-4641     TCGA-CJ-4643     TCGA-CJ-4644 
"RLIM WILD-TYPE" "RLIM WILD-TYPE" "RLIM WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RLIM MUTATED        3      4      2
  RLIM WILD-TYPE    177    238    241
D39V3, multiclass
        clus
vv       RLIM MUTATED RLIM WILD-TYPE
  CLUS_1            3            177
  CLUS_2            4            238
  CLUS_3            2            241
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RLIM MUTATED        2      3      3
  RLIM WILD-TYPE    101    252    116
D39V4, multiclass
        clus
vv       RLIM MUTATED RLIM WILD-TYPE
  CLUS_1            2            101
  CLUS_2            3            252
  CLUS_3            3            116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RLIM MUTATED        2      2      2      3
  RLIM WILD-TYPE     96    172    243    146
D39V5, multiclass
        clus
vv       RLIM MUTATED RLIM WILD-TYPE
  CLUS_1            2             96
  CLUS_2            2            172
  CLUS_3            2            243
  CLUS_4            3            146
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RLIM MUTATED        2      2      2      2      0      1
  RLIM WILD-TYPE     78     88    175    136     90     90
D39V6, multiclass
        clus
vv       RLIM MUTATED RLIM WILD-TYPE
  CLUS_1            2             78
  CLUS_2            2             88
  CLUS_3            2            175
  CLUS_4            2            136
  CLUS_5            0             90
  CLUS_6            1             90
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RLIM MUTATED        6      0      3
  RLIM WILD-TYPE    208    148    293
D39V7, multiclass
        clus
vv       RLIM MUTATED RLIM WILD-TYPE
  CLUS_1            6            208
  CLUS_2            0            148
  CLUS_3            3            293
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RLIM MUTATED        1      7      1
  RLIM WILD-TYPE     71    469    109
D39V8, multiclass
        clus
vv       RLIM MUTATED RLIM WILD-TYPE
  CLUS_1            1             71
  CLUS_2            7            469
  CLUS_3            1            109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RLIM MUTATED        1      1      1      1
  RLIM WILD-TYPE     75     59     41     98
D39V9, multiclass
        clus
vv       RLIM MUTATED RLIM WILD-TYPE
  CLUS_1            1             75
  CLUS_2            1             59
  CLUS_3            1             41
  CLUS_4            1             98
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RLIM MUTATED        0      1      1      1      1
  RLIM WILD-TYPE     26     42     61     99     45
D39V10, multiclass
        clus
vv       RLIM MUTATED RLIM WILD-TYPE
  CLUS_1            0             26
  CLUS_2            1             42
  CLUS_3            1             61
  CLUS_4            1             99
  CLUS_5            1             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(40) Variable = SLC23A1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC23A1 MUTATED        2      0      0      0
  SLC23A1 WILD-TYPE     19     17      9     14
D40V1, multiclass
[1] "Remove cluster labels:" "SLC23A1 MUTATED"       
clus
  SLC23A1 MUTATED SLC23A1 WILD-TYPE 
                2                59 
       TCGA-A3-3311        TCGA-A3-3316        TCGA-A3-3317        TCGA-A3-3323 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-A3-3326        TCGA-A3-3331        TCGA-A3-3347        TCGA-A3-3349 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-A3-3362        TCGA-A3-3363        TCGA-A3-3365        TCGA-A3-3374 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-A3-3380        TCGA-A3-3383        TCGA-AK-3427        TCGA-AK-3440 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-AK-3443        TCGA-AK-3453        TCGA-AK-3455        TCGA-AK-3456 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-AK-3465        TCGA-AL-3466        TCGA-AL-3467        TCGA-AL-3472 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-AL-3473        TCGA-AS-3777        TCGA-AS-3778        TCGA-B2-3923 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-B2-3924        TCGA-B2-4098        TCGA-B2-4099        TCGA-B3-3925 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-B3-3926        TCGA-B3-4103        TCGA-B3-4104        TCGA-B8-4143 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-B8-4148        TCGA-B8-4151        TCGA-B8-4154        TCGA-B8-4619 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-B8-4620        TCGA-B9-4113        TCGA-B9-4114        TCGA-B9-4115 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-B9-4116        TCGA-B9-4117        TCGA-BP-4161        TCGA-BP-4162 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-BP-4163        TCGA-BP-4164        TCGA-BP-4167        TCGA-CJ-4636 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-CJ-4637        TCGA-CJ-4638        TCGA-CJ-4639        TCGA-CJ-4640 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-CJ-4641        TCGA-CJ-4643        TCGA-CJ-4644 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC23A1 MUTATED        2      0      0      0      0
  SLC23A1 WILD-TYPE      9     17     14     10      9
D40V2, multiclass
[1] "Remove cluster labels:" "SLC23A1 MUTATED"       
clus
  SLC23A1 MUTATED SLC23A1 WILD-TYPE 
                2                59 
       TCGA-A3-3311        TCGA-A3-3316        TCGA-A3-3317        TCGA-A3-3323 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-A3-3326        TCGA-A3-3331        TCGA-A3-3347        TCGA-A3-3349 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-A3-3362        TCGA-A3-3363        TCGA-A3-3365        TCGA-A3-3374 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-A3-3380        TCGA-A3-3383        TCGA-AK-3427        TCGA-AK-3440 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-AK-3443        TCGA-AK-3453        TCGA-AK-3455        TCGA-AK-3456 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-AK-3465        TCGA-AL-3466        TCGA-AL-3467        TCGA-AL-3472 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-AL-3473        TCGA-AS-3777        TCGA-AS-3778        TCGA-B2-3923 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-B2-3924        TCGA-B2-4098        TCGA-B2-4099        TCGA-B3-3925 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-B3-3926        TCGA-B3-4103        TCGA-B3-4104        TCGA-B8-4143 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-B8-4148        TCGA-B8-4151        TCGA-B8-4154        TCGA-B8-4619 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-B8-4620        TCGA-B9-4113        TCGA-B9-4114        TCGA-B9-4115 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-B9-4116        TCGA-B9-4117        TCGA-BP-4161        TCGA-BP-4162 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-BP-4163        TCGA-BP-4164        TCGA-BP-4167        TCGA-CJ-4636 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-CJ-4637        TCGA-CJ-4638        TCGA-CJ-4639        TCGA-CJ-4640 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-CJ-4641        TCGA-CJ-4643        TCGA-CJ-4644 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC23A1 MUTATED        1      3      3
  SLC23A1 WILD-TYPE    179    239    240
D40V3, multiclass
        clus
vv       SLC23A1 MUTATED SLC23A1 WILD-TYPE
  CLUS_1               1               179
  CLUS_2               3               239
  CLUS_3               3               240
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC23A1 MUTATED        0      3      2
  SLC23A1 WILD-TYPE    103    252    117
D40V4, multiclass
        clus
vv       SLC23A1 MUTATED SLC23A1 WILD-TYPE
  CLUS_1               0               103
  CLUS_2               3               252
  CLUS_3               2               117
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC23A1 MUTATED        0      0      5      2
  SLC23A1 WILD-TYPE     98    174    240    147
D40V5, multiclass
        clus
vv       SLC23A1 MUTATED SLC23A1 WILD-TYPE
  CLUS_1               0                98
  CLUS_2               0               174
  CLUS_3               5               240
  CLUS_4               2               147
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SLC23A1 MUTATED        0      1      2      0      3      1
  SLC23A1 WILD-TYPE     80     89    175    138     87     90
D40V6, multiclass
        clus
vv       SLC23A1 MUTATED SLC23A1 WILD-TYPE
  CLUS_1               0                80
  CLUS_2               1                89
  CLUS_3               2               175
  CLUS_4               0               138
  CLUS_5               3                87
  CLUS_6               1                90
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC23A1 MUTATED        2      1      4
  SLC23A1 WILD-TYPE    212    147    292
D40V7, multiclass
        clus
vv       SLC23A1 MUTATED SLC23A1 WILD-TYPE
  CLUS_1               2               212
  CLUS_2               1               147
  CLUS_3               4               292
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC23A1 MUTATED        0      5      2
  SLC23A1 WILD-TYPE     72    471    108
D40V8, multiclass
        clus
vv       SLC23A1 MUTATED SLC23A1 WILD-TYPE
  CLUS_1               0                72
  CLUS_2               5               471
  CLUS_3               2               108
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC23A1 MUTATED        1      0      0      0
  SLC23A1 WILD-TYPE     75     60     42     99
D40V9, multiclass
[1] "Remove cluster labels:" "SLC23A1 MUTATED"       
clus
  SLC23A1 MUTATED SLC23A1 WILD-TYPE 
                1               276 
       TCGA-A3-3317        TCGA-A3-3358        TCGA-A3-3387        TCGA-A4-7286 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-A4-7287        TCGA-A4-7288        TCGA-A4-7585        TCGA-A4-7734 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-A4-7828        TCGA-A4-7915        TCGA-A4-7996        TCGA-A4-7997 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-A4-8098        TCGA-A4-8310        TCGA-A4-8312        TCGA-A4-8515 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-A4-8517        TCGA-A4-8518        TCGA-A4-8630        TCGA-A4-A57E 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-A4-A5XZ        TCGA-A4-A5Y0        TCGA-A4-A5Y1        TCGA-AK-3440 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-AK-3458        TCGA-AK-3465        TCGA-AL-3466        TCGA-AL-3472 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-AL-3473        TCGA-AL-7173        TCGA-AT-A5NU        TCGA-B0-4700 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-B0-4706        TCGA-B0-4710        TCGA-B0-4712        TCGA-B0-4810 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-B0-4811        TCGA-B0-4836        TCGA-B0-4837        TCGA-B0-4852 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-B0-5080        TCGA-B0-5085        TCGA-B0-5088        TCGA-B0-5399 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-B0-5691        TCGA-B0-5692        TCGA-B0-5693        TCGA-B0-5694 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-B0-5695        TCGA-B0-5696        TCGA-B0-5699        TCGA-B0-5702 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-B0-5705        TCGA-B0-5709        TCGA-B1-5398        TCGA-B1-A47N 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-B1-A654        TCGA-B1-A656        TCGA-B1-A657        TCGA-B2-3923 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-B2-3924        TCGA-B2-5633        TCGA-B2-5635        TCGA-B3-3925 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-B3-4104        TCGA-B3-8121        TCGA-B4-5377        TCGA-B4-5836 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-B8-4621        TCGA-B8-5545        TCGA-B8-5550        TCGA-B8-5551 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-B8-5552        TCGA-B8-5553        TCGA-B9-4115        TCGA-B9-4117 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-B9-5156        TCGA-B9-A44B        TCGA-B9-A5W9        TCGA-B9-A69E 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-BP-4173        TCGA-BP-4340        TCGA-BP-4761        TCGA-BP-4770 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-BP-4787        TCGA-BP-4789        TCGA-BP-4790        TCGA-BP-4804 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-BP-4807        TCGA-BP-4961        TCGA-BP-4967        TCGA-BP-4968 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-BP-4970        TCGA-BP-4974        TCGA-BP-4976        TCGA-BP-4981 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-BP-4982        TCGA-BP-4985        TCGA-BP-4988        TCGA-BP-4989 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-BP-4992        TCGA-BP-4995        TCGA-BP-4998        TCGA-BP-5001 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-BP-5008        TCGA-BP-5009        TCGA-BQ-5876        TCGA-BQ-5877 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-BQ-5879        TCGA-BQ-5880        TCGA-BQ-5881        TCGA-BQ-5882 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-BQ-5883        TCGA-BQ-5884        TCGA-BQ-5886        TCGA-BQ-5887 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-BQ-5888        TCGA-BQ-5889        TCGA-BQ-5890        TCGA-BQ-5891 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-BQ-5892        TCGA-BQ-5893        TCGA-BQ-5894        TCGA-BQ-7044 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-BQ-7045        TCGA-BQ-7046        TCGA-BQ-7048        TCGA-BQ-7050 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-BQ-7051        TCGA-BQ-7053        TCGA-BQ-7055        TCGA-BQ-7058 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-BQ-7059        TCGA-BQ-7060        TCGA-BQ-7061        TCGA-BQ-7062 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-CJ-4870        TCGA-CJ-4875        TCGA-CJ-4876        TCGA-CJ-4878 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-CJ-4881        TCGA-CJ-4887        TCGA-CJ-4889        TCGA-CJ-4890 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-CJ-4895        TCGA-CJ-4900        TCGA-CJ-5671        TCGA-CJ-5675 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-CJ-5676        TCGA-CJ-5681        TCGA-CJ-5683        TCGA-CJ-5686 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-CJ-6031        TCGA-CJ-6032        TCGA-CW-5585        TCGA-CW-5589 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-CW-6087        TCGA-CZ-4854        TCGA-CZ-4857        TCGA-CZ-4858 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-CZ-5453        TCGA-CZ-5454        TCGA-CZ-5455        TCGA-CZ-5457 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-CZ-5459        TCGA-CZ-5462        TCGA-CZ-5463        TCGA-CZ-5466 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-CZ-5467        TCGA-CZ-5469        TCGA-CZ-5470        TCGA-CZ-5989 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-DV-5565        TCGA-DV-5566        TCGA-DV-5569        TCGA-DW-5560 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-DW-5561        TCGA-DW-7834        TCGA-DW-7837        TCGA-DW-7838 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-DW-7839        TCGA-DW-7840        TCGA-DW-7842        TCGA-DZ-6131 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-DZ-6132        TCGA-DZ-6133        TCGA-DZ-6134        TCGA-DZ-6135 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-EU-5904        TCGA-EV-5901        TCGA-EV-5902        TCGA-EV-5903 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-F9-A4JJ        TCGA-G7-6789        TCGA-G7-6790        TCGA-G7-6792 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-G7-6793        TCGA-G7-6795        TCGA-G7-6796        TCGA-G7-7501 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-G7-7502        TCGA-G7-A4TM        TCGA-GL-6846        TCGA-GL-7773 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-GL-7966        TCGA-GL-8500        TCGA-GL-A4EM        TCGA-GL-A59T 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-HE-7128        TCGA-HE-7130        TCGA-HE-A5NJ        TCGA-IA-A40U 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-IA-A40X        TCGA-IA-A40Y        TCGA-IZ-8195        TCGA-IZ-8196 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-IZ-A6M9        TCGA-J7-6720        TCGA-J7-8537        TCGA-KL-8323 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-KL-8324        TCGA-KL-8327        TCGA-KL-8328        TCGA-KL-8331 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-KL-8332        TCGA-KL-8333        TCGA-KL-8334        TCGA-KL-8335 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-KL-8336        TCGA-KL-8338        TCGA-KL-8339        TCGA-KL-8340 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-KL-8341        TCGA-KL-8342        TCGA-KL-8343        TCGA-KL-8344 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-KL-8345        TCGA-KM-8438        TCGA-KM-8439        TCGA-KM-8441 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-KM-8442        TCGA-KM-8639        TCGA-KN-8418        TCGA-KN-8419 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-KN-8422        TCGA-KN-8423        TCGA-KN-8424        TCGA-KN-8426 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-KN-8427        TCGA-KN-8428        TCGA-KN-8429        TCGA-KN-8430 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-KN-8431        TCGA-KN-8432        TCGA-KN-8433        TCGA-KN-8434 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-KN-8436        TCGA-KN-8437        TCGA-KO-8404        TCGA-KO-8405 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-KO-8408        TCGA-KO-8409        TCGA-KO-8410        TCGA-KO-8413 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-KO-8415        TCGA-KO-8416        TCGA-KO-8417        TCGA-KV-A6GD 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-KV-A6GE        TCGA-P4-A5E6        TCGA-P4-A5E7        TCGA-P4-A5E8 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-P4-A5EA        TCGA-PJ-A5Z8        TCGA-PJ-A5Z9        TCGA-Q2-A5QZ 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC23A1 MUTATED        0      1      0      0      0
  SLC23A1 WILD-TYPE     26     42     62    100     46
D40V10, multiclass
[1] "Remove cluster labels:" "SLC23A1 MUTATED"       
clus
  SLC23A1 MUTATED SLC23A1 WILD-TYPE 
                1               276 
       TCGA-A3-3317        TCGA-A3-3358        TCGA-A3-3387        TCGA-A4-7286 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-A4-7287        TCGA-A4-7288        TCGA-A4-7585        TCGA-A4-7734 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-A4-7828        TCGA-A4-7915        TCGA-A4-7996        TCGA-A4-7997 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-A4-8098        TCGA-A4-8310        TCGA-A4-8312        TCGA-A4-8515 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-A4-8517        TCGA-A4-8518        TCGA-A4-8630        TCGA-A4-A57E 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-A4-A5XZ        TCGA-A4-A5Y0        TCGA-A4-A5Y1        TCGA-AK-3440 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-AK-3458        TCGA-AK-3465        TCGA-AL-3466        TCGA-AL-3472 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-AL-3473        TCGA-AL-7173        TCGA-AT-A5NU        TCGA-B0-4700 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-B0-4706        TCGA-B0-4710        TCGA-B0-4712        TCGA-B0-4810 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-B0-4811        TCGA-B0-4836        TCGA-B0-4837        TCGA-B0-4852 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-B0-5080        TCGA-B0-5085        TCGA-B0-5088        TCGA-B0-5399 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-B0-5691        TCGA-B0-5692        TCGA-B0-5693        TCGA-B0-5694 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-B0-5695        TCGA-B0-5696        TCGA-B0-5699        TCGA-B0-5702 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-B0-5705        TCGA-B0-5709        TCGA-B1-5398        TCGA-B1-A47N 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-B1-A654        TCGA-B1-A656        TCGA-B1-A657        TCGA-B2-3923 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-B2-3924        TCGA-B2-5633        TCGA-B2-5635        TCGA-B3-3925 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-B3-4104        TCGA-B3-8121        TCGA-B4-5377        TCGA-B4-5836 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-B8-4621        TCGA-B8-5545        TCGA-B8-5550        TCGA-B8-5551 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-B8-5552        TCGA-B8-5553        TCGA-B9-4115        TCGA-B9-4117 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-B9-5156        TCGA-B9-A44B        TCGA-B9-A5W9        TCGA-B9-A69E 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-BP-4173        TCGA-BP-4340        TCGA-BP-4761        TCGA-BP-4770 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-BP-4787        TCGA-BP-4789        TCGA-BP-4790        TCGA-BP-4804 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-BP-4807        TCGA-BP-4961        TCGA-BP-4967        TCGA-BP-4968 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-BP-4970        TCGA-BP-4974        TCGA-BP-4976        TCGA-BP-4981 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-BP-4982        TCGA-BP-4985        TCGA-BP-4988        TCGA-BP-4989 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-BP-4992        TCGA-BP-4995        TCGA-BP-4998        TCGA-BP-5001 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-BP-5008        TCGA-BP-5009        TCGA-BQ-5876        TCGA-BQ-5877 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-BQ-5879        TCGA-BQ-5880        TCGA-BQ-5881        TCGA-BQ-5882 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-BQ-5883        TCGA-BQ-5884        TCGA-BQ-5886        TCGA-BQ-5887 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-BQ-5888        TCGA-BQ-5889        TCGA-BQ-5890        TCGA-BQ-5891 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-BQ-5892        TCGA-BQ-5893        TCGA-BQ-5894        TCGA-BQ-7044 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-BQ-7045        TCGA-BQ-7046        TCGA-BQ-7048        TCGA-BQ-7050 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-BQ-7051        TCGA-BQ-7053        TCGA-BQ-7055        TCGA-BQ-7058 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-BQ-7059        TCGA-BQ-7060        TCGA-BQ-7061        TCGA-BQ-7062 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-CJ-4870        TCGA-CJ-4875        TCGA-CJ-4876        TCGA-CJ-4878 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-CJ-4881        TCGA-CJ-4887        TCGA-CJ-4889        TCGA-CJ-4890 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-CJ-4895        TCGA-CJ-4900        TCGA-CJ-5671        TCGA-CJ-5675 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-CJ-5676        TCGA-CJ-5681        TCGA-CJ-5683        TCGA-CJ-5686 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-CJ-6031        TCGA-CJ-6032        TCGA-CW-5585        TCGA-CW-5589 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-CW-6087        TCGA-CZ-4854        TCGA-CZ-4857        TCGA-CZ-4858 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-CZ-5453        TCGA-CZ-5454        TCGA-CZ-5455        TCGA-CZ-5457 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-CZ-5459        TCGA-CZ-5462        TCGA-CZ-5463        TCGA-CZ-5466 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-CZ-5467        TCGA-CZ-5469        TCGA-CZ-5470        TCGA-CZ-5989 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-DV-5565        TCGA-DV-5566        TCGA-DV-5569        TCGA-DW-5560 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-DW-5561        TCGA-DW-7834        TCGA-DW-7837        TCGA-DW-7838 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-DW-7839        TCGA-DW-7840        TCGA-DW-7842        TCGA-DZ-6131 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-DZ-6132        TCGA-DZ-6133        TCGA-DZ-6134        TCGA-DZ-6135 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-EU-5904        TCGA-EV-5901        TCGA-EV-5902        TCGA-EV-5903 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-F9-A4JJ        TCGA-G7-6789        TCGA-G7-6790        TCGA-G7-6792 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-G7-6793        TCGA-G7-6795        TCGA-G7-6796        TCGA-G7-7501 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-G7-7502        TCGA-G7-A4TM        TCGA-GL-6846        TCGA-GL-7773 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-GL-7966        TCGA-GL-8500        TCGA-GL-A4EM        TCGA-GL-A59T 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-HE-7128        TCGA-HE-7130        TCGA-HE-A5NJ        TCGA-IA-A40U 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-IA-A40X        TCGA-IA-A40Y        TCGA-IZ-8195        TCGA-IZ-8196 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-IZ-A6M9        TCGA-J7-6720        TCGA-J7-8537        TCGA-KL-8323 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-KL-8324        TCGA-KL-8327        TCGA-KL-8328        TCGA-KL-8331 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-KL-8332        TCGA-KL-8333        TCGA-KL-8334        TCGA-KL-8335 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-KL-8336        TCGA-KL-8338        TCGA-KL-8339        TCGA-KL-8340 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-KL-8341        TCGA-KL-8342        TCGA-KL-8343        TCGA-KL-8344 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-KL-8345        TCGA-KM-8438        TCGA-KM-8439        TCGA-KM-8441 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-KM-8442        TCGA-KM-8639        TCGA-KN-8418        TCGA-KN-8419 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-KN-8422        TCGA-KN-8423        TCGA-KN-8424        TCGA-KN-8426 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-KN-8427        TCGA-KN-8428        TCGA-KN-8429        TCGA-KN-8430 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-KN-8431        TCGA-KN-8432        TCGA-KN-8433        TCGA-KN-8434 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-KN-8436        TCGA-KN-8437        TCGA-KO-8404        TCGA-KO-8405 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-KO-8408        TCGA-KO-8409        TCGA-KO-8410        TCGA-KO-8413 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-KO-8415        TCGA-KO-8416        TCGA-KO-8417        TCGA-KV-A6GD 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-KV-A6GE        TCGA-P4-A5E6        TCGA-P4-A5E7        TCGA-P4-A5E8 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-P4-A5EA        TCGA-PJ-A5Z8        TCGA-PJ-A5Z9        TCGA-Q2-A5QZ 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 

Clustering(41) Variable = STAM MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STAM MUTATED        1      0      0      0
  STAM WILD-TYPE     20     17      9     14
D41V1, multiclass
[1] "Remove cluster labels:" "STAM MUTATED"          
clus
  STAM MUTATED STAM WILD-TYPE 
             1             60 
    TCGA-A3-3311     TCGA-A3-3316     TCGA-A3-3317     TCGA-A3-3322 
"STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" 
    TCGA-A3-3323     TCGA-A3-3326     TCGA-A3-3331     TCGA-A3-3347 
"STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" 
    TCGA-A3-3349     TCGA-A3-3362     TCGA-A3-3363     TCGA-A3-3365 
"STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" 
    TCGA-A3-3374     TCGA-A3-3380     TCGA-A3-3383     TCGA-AK-3427 
"STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" 
    TCGA-AK-3440     TCGA-AK-3443     TCGA-AK-3453     TCGA-AK-3455 
"STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" 
    TCGA-AK-3456     TCGA-AK-3465     TCGA-AL-3466     TCGA-AL-3467 
"STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" 
    TCGA-AL-3472     TCGA-AL-3473     TCGA-AS-3777     TCGA-AS-3778 
"STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" 
    TCGA-B2-3923     TCGA-B2-3924     TCGA-B2-4098     TCGA-B2-4099 
"STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" 
    TCGA-B3-3925     TCGA-B3-3926     TCGA-B3-4103     TCGA-B3-4104 
"STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" 
    TCGA-B8-4143     TCGA-B8-4148     TCGA-B8-4151     TCGA-B8-4154 
"STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" 
    TCGA-B8-4619     TCGA-B8-4620     TCGA-B9-4113     TCGA-B9-4114 
"STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" 
    TCGA-B9-4115     TCGA-B9-4116     TCGA-B9-4117     TCGA-BP-4161 
"STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" 
    TCGA-BP-4162     TCGA-BP-4163     TCGA-BP-4164     TCGA-BP-4167 
"STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" 
    TCGA-CJ-4634     TCGA-CJ-4636     TCGA-CJ-4637     TCGA-CJ-4638 
"STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" 
    TCGA-CJ-4640     TCGA-CJ-4641     TCGA-CJ-4643     TCGA-CJ-4644 
"STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  STAM MUTATED        0      0      0      1      0
  STAM WILD-TYPE     11     17     14      9      9
D41V2, multiclass
[1] "Remove cluster labels:" "STAM MUTATED"          
clus
  STAM MUTATED STAM WILD-TYPE 
             1             60 
    TCGA-A3-3311     TCGA-A3-3316     TCGA-A3-3317     TCGA-A3-3322 
"STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" 
    TCGA-A3-3323     TCGA-A3-3326     TCGA-A3-3331     TCGA-A3-3347 
"STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" 
    TCGA-A3-3349     TCGA-A3-3362     TCGA-A3-3363     TCGA-A3-3365 
"STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" 
    TCGA-A3-3374     TCGA-A3-3380     TCGA-A3-3383     TCGA-AK-3427 
"STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" 
    TCGA-AK-3440     TCGA-AK-3443     TCGA-AK-3453     TCGA-AK-3455 
"STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" 
    TCGA-AK-3456     TCGA-AK-3465     TCGA-AL-3466     TCGA-AL-3467 
"STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" 
    TCGA-AL-3472     TCGA-AL-3473     TCGA-AS-3777     TCGA-AS-3778 
"STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" 
    TCGA-B2-3923     TCGA-B2-3924     TCGA-B2-4098     TCGA-B2-4099 
"STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" 
    TCGA-B3-3925     TCGA-B3-3926     TCGA-B3-4103     TCGA-B3-4104 
"STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" 
    TCGA-B8-4143     TCGA-B8-4148     TCGA-B8-4151     TCGA-B8-4154 
"STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" 
    TCGA-B8-4619     TCGA-B8-4620     TCGA-B9-4113     TCGA-B9-4114 
"STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" 
    TCGA-B9-4115     TCGA-B9-4116     TCGA-B9-4117     TCGA-BP-4161 
"STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" 
    TCGA-BP-4162     TCGA-BP-4163     TCGA-BP-4164     TCGA-BP-4167 
"STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" 
    TCGA-CJ-4634     TCGA-CJ-4636     TCGA-CJ-4637     TCGA-CJ-4638 
"STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" 
    TCGA-CJ-4640     TCGA-CJ-4641     TCGA-CJ-4643     TCGA-CJ-4644 
"STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  STAM MUTATED        2      2      2
  STAM WILD-TYPE    178    240    241
D41V3, multiclass
        clus
vv       STAM MUTATED STAM WILD-TYPE
  CLUS_1            2            178
  CLUS_2            2            240
  CLUS_3            2            241
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  STAM MUTATED        4      1      0
  STAM WILD-TYPE     99    254    119
D41V4, multiclass
        clus
vv       STAM MUTATED STAM WILD-TYPE
  CLUS_1            4             99
  CLUS_2            1            254
  CLUS_3            0            119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STAM MUTATED        2      2      2      0
  STAM WILD-TYPE     96    172    243    149
D41V5, multiclass
        clus
vv       STAM MUTATED STAM WILD-TYPE
  CLUS_1            2             96
  CLUS_2            2            172
  CLUS_3            2            243
  CLUS_4            0            149
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  STAM MUTATED        1      3      1      0      1      0
  STAM WILD-TYPE     79     87    176    138     89     91
D41V6, multiclass
        clus
vv       STAM MUTATED STAM WILD-TYPE
  CLUS_1            1             79
  CLUS_2            3             87
  CLUS_3            1            176
  CLUS_4            0            138
  CLUS_5            1             89
  CLUS_6            0             91
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  STAM MUTATED        1      3      2
  STAM WILD-TYPE    213    145    294
D41V7, multiclass
        clus
vv       STAM MUTATED STAM WILD-TYPE
  CLUS_1            1            213
  CLUS_2            3            145
  CLUS_3            2            294
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  STAM MUTATED        1      5      0
  STAM WILD-TYPE     71    471    110
D41V8, multiclass
        clus
vv       STAM MUTATED STAM WILD-TYPE
  CLUS_1            1             71
  CLUS_2            5            471
  CLUS_3            0            110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STAM MUTATED        0      0      3      0
  STAM WILD-TYPE     76     60     39     99
D41V9, multiclass
        clus
vv       STAM MUTATED STAM WILD-TYPE
  CLUS_1            0             76
  CLUS_2            0             60
  CLUS_3            3             39
  CLUS_4            0             99
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  STAM MUTATED        0      0      3      0      0
  STAM WILD-TYPE     26     43     59    100     46
D41V10, multiclass
        clus
vv       STAM MUTATED STAM WILD-TYPE
  CLUS_1            0             26
  CLUS_2            0             43
  CLUS_3            3             59
  CLUS_4            0            100
  CLUS_5            0             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(42) Variable = RHEB MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RHEB MUTATED        0      0      0      0
  RHEB WILD-TYPE     21     17      9     14
D42V1, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RHEB MUTATED        0      0      0      0      0
  RHEB WILD-TYPE     11     17     14     10      9
D42V2, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RHEB MUTATED        0      2      2
  RHEB WILD-TYPE    180    240    241
D42V3, multiclass
        clus
vv       RHEB MUTATED RHEB WILD-TYPE
  CLUS_1            0            180
  CLUS_2            2            240
  CLUS_3            2            241
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RHEB MUTATED        0      2      1
  RHEB WILD-TYPE    103    253    118
D42V4, multiclass
        clus
vv       RHEB MUTATED RHEB WILD-TYPE
  CLUS_1            0            103
  CLUS_2            2            253
  CLUS_3            1            118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RHEB MUTATED        0      1      2      1
  RHEB WILD-TYPE     98    173    243    148
D42V5, multiclass
        clus
vv       RHEB MUTATED RHEB WILD-TYPE
  CLUS_1            0             98
  CLUS_2            1            173
  CLUS_3            2            243
  CLUS_4            1            148
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RHEB MUTATED        0      1      0      1      2      0
  RHEB WILD-TYPE     80     89    177    137     88     91
D42V6, multiclass
        clus
vv       RHEB MUTATED RHEB WILD-TYPE
  CLUS_1            0             80
  CLUS_2            1             89
  CLUS_3            0            177
  CLUS_4            1            137
  CLUS_5            2             88
  CLUS_6            0             91
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RHEB MUTATED        0      2      2
  RHEB WILD-TYPE    214    146    294
D42V7, multiclass
        clus
vv       RHEB MUTATED RHEB WILD-TYPE
  CLUS_1            0            214
  CLUS_2            2            146
  CLUS_3            2            294
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RHEB MUTATED        0      4      0
  RHEB WILD-TYPE     72    472    110
D42V8, multiclass
        clus
vv       RHEB MUTATED RHEB WILD-TYPE
  CLUS_1            0             72
  CLUS_2            4            472
  CLUS_3            0            110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RHEB MUTATED        0      0      1      2
  RHEB WILD-TYPE     76     60     41     97
D42V9, multiclass
        clus
vv       RHEB MUTATED RHEB WILD-TYPE
  CLUS_1            0             76
  CLUS_2            0             60
  CLUS_3            1             41
  CLUS_4            2             97
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RHEB MUTATED        0      0      1      2      0
  RHEB WILD-TYPE     26     43     61     98     46
D42V10, multiclass
        clus
vv       RHEB MUTATED RHEB WILD-TYPE
  CLUS_1            0             26
  CLUS_2            0             43
  CLUS_3            1             61
  CLUS_4            2             98
  CLUS_5            0             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(43) Variable = SLC4A8 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC4A8 MUTATED        0      0      0      0
  SLC4A8 WILD-TYPE     21     17      9     14
D43V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC4A8 MUTATED        0      0      0      0      0
  SLC4A8 WILD-TYPE     11     17     14     10      9
D43V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SLC4A8 MUTATED        2      0      4
  SLC4A8 WILD-TYPE    178    242    239
D43V3, multiclass
        clus
vv       SLC4A8 MUTATED SLC4A8 WILD-TYPE
  CLUS_1              2              178
  CLUS_2              0              242
  CLUS_3              4              239
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SLC4A8 MUTATED        2      4      0
  SLC4A8 WILD-TYPE    101    251    119
D43V4, multiclass
        clus
vv       SLC4A8 MUTATED SLC4A8 WILD-TYPE
  CLUS_1              2              101
  CLUS_2              4              251
  CLUS_3              0              119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC4A8 MUTATED        2      3      1      0
  SLC4A8 WILD-TYPE     96    171    244    149
D43V5, multiclass
        clus
vv       SLC4A8 MUTATED SLC4A8 WILD-TYPE
  CLUS_1              2               96
  CLUS_2              3              171
  CLUS_3              1              244
  CLUS_4              0              149
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SLC4A8 MUTATED        2      0      2      2      0      0
  SLC4A8 WILD-TYPE     78     90    175    136     90     91
D43V6, multiclass
        clus
vv       SLC4A8 MUTATED SLC4A8 WILD-TYPE
  CLUS_1              2               78
  CLUS_2              0               90
  CLUS_3              2              175
  CLUS_4              2              136
  CLUS_5              0               90
  CLUS_6              0               91
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SLC4A8 MUTATED        2      1      3
  SLC4A8 WILD-TYPE    212    147    293
D43V7, multiclass
        clus
vv       SLC4A8 MUTATED SLC4A8 WILD-TYPE
  CLUS_1              2              212
  CLUS_2              1              147
  CLUS_3              3              293
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SLC4A8 MUTATED        2      4      0
  SLC4A8 WILD-TYPE     70    472    110
D43V8, multiclass
        clus
vv       SLC4A8 MUTATED SLC4A8 WILD-TYPE
  CLUS_1              2               70
  CLUS_2              4              472
  CLUS_3              0              110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC4A8 MUTATED        0      1      0      1
  SLC4A8 WILD-TYPE     76     59     42     98
D43V9, multiclass
[1] "Remove cluster labels:" "SLC4A8 MUTATED"        
clus
  SLC4A8 MUTATED SLC4A8 WILD-TYPE 
               2              275 
      TCGA-A3-3317       TCGA-A3-3358       TCGA-A3-3387       TCGA-A4-7286 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-A4-7287       TCGA-A4-7288       TCGA-A4-7585       TCGA-A4-7734 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-A4-7828       TCGA-A4-7915       TCGA-A4-7996       TCGA-A4-7997 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-A4-8098       TCGA-A4-8310       TCGA-A4-8312       TCGA-A4-8515 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-A4-8517       TCGA-A4-8518       TCGA-A4-8630       TCGA-A4-A57E 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-A4-A5XZ       TCGA-A4-A5Y0       TCGA-A4-A5Y1       TCGA-AK-3440 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-AK-3458       TCGA-AK-3465       TCGA-AL-3466       TCGA-AL-3472 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-AL-3473       TCGA-AL-7173       TCGA-AT-A5NU       TCGA-B0-4700 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-B0-4706       TCGA-B0-4710       TCGA-B0-4712       TCGA-B0-4810 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-B0-4811       TCGA-B0-4836       TCGA-B0-4837       TCGA-B0-4852 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-B0-5080       TCGA-B0-5085       TCGA-B0-5088       TCGA-B0-5399 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-B0-5691       TCGA-B0-5692       TCGA-B0-5693       TCGA-B0-5694 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-B0-5695       TCGA-B0-5696       TCGA-B0-5699       TCGA-B0-5702 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-B0-5705       TCGA-B0-5709       TCGA-B1-5398       TCGA-B1-A47N 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-B1-A654       TCGA-B1-A656       TCGA-B1-A657       TCGA-B2-3923 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-B2-3924       TCGA-B2-5633       TCGA-B2-5635       TCGA-B3-3925 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-B3-4104       TCGA-B3-8121       TCGA-B4-5377       TCGA-B4-5836 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-B8-4621       TCGA-B8-5545       TCGA-B8-5550       TCGA-B8-5551 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-B8-5552       TCGA-B8-5553       TCGA-B9-4115       TCGA-B9-4117 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-B9-5156       TCGA-B9-A44B       TCGA-B9-A5W9       TCGA-B9-A69E 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-BP-4173       TCGA-BP-4340       TCGA-BP-4761       TCGA-BP-4770 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-BP-4787       TCGA-BP-4789       TCGA-BP-4790       TCGA-BP-4804 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-BP-4807       TCGA-BP-4961       TCGA-BP-4967       TCGA-BP-4968 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-BP-4970       TCGA-BP-4974       TCGA-BP-4976       TCGA-BP-4981 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-BP-4982       TCGA-BP-4985       TCGA-BP-4988       TCGA-BP-4989 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-BP-4992       TCGA-BP-4995       TCGA-BP-4998       TCGA-BP-5001 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-BP-5008       TCGA-BP-5009       TCGA-BQ-5876       TCGA-BQ-5877 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-BQ-5878       TCGA-BQ-5879       TCGA-BQ-5880       TCGA-BQ-5881 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-BQ-5882       TCGA-BQ-5883       TCGA-BQ-5884       TCGA-BQ-5886 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-BQ-5887       TCGA-BQ-5888       TCGA-BQ-5889       TCGA-BQ-5890 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-BQ-5891       TCGA-BQ-5892       TCGA-BQ-5893       TCGA-BQ-5894 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-BQ-7044       TCGA-BQ-7045       TCGA-BQ-7046       TCGA-BQ-7048 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-BQ-7050       TCGA-BQ-7051       TCGA-BQ-7053       TCGA-BQ-7055 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-BQ-7058       TCGA-BQ-7059       TCGA-BQ-7060       TCGA-BQ-7061 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-BQ-7062       TCGA-CJ-4870       TCGA-CJ-4875       TCGA-CJ-4876 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-CJ-4878       TCGA-CJ-4881       TCGA-CJ-4887       TCGA-CJ-4889 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-CJ-4890       TCGA-CJ-4895       TCGA-CJ-4900       TCGA-CJ-5671 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-CJ-5675       TCGA-CJ-5676       TCGA-CJ-5681       TCGA-CJ-5683 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-CJ-5686       TCGA-CJ-6031       TCGA-CJ-6032       TCGA-CW-5585 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-CW-5589       TCGA-CW-6087       TCGA-CZ-4854       TCGA-CZ-4857 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-CZ-4858       TCGA-CZ-5453       TCGA-CZ-5454       TCGA-CZ-5455 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-CZ-5457       TCGA-CZ-5459       TCGA-CZ-5462       TCGA-CZ-5463 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-CZ-5467       TCGA-CZ-5469       TCGA-CZ-5470       TCGA-CZ-5989 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-DV-5565       TCGA-DV-5566       TCGA-DV-5569       TCGA-DW-5560 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-DW-5561       TCGA-DW-7834       TCGA-DW-7837       TCGA-DW-7838 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-DW-7839       TCGA-DW-7840       TCGA-DW-7842       TCGA-DZ-6131 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-DZ-6132       TCGA-DZ-6133       TCGA-DZ-6134       TCGA-DZ-6135 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-EU-5904       TCGA-EV-5901       TCGA-EV-5902       TCGA-EV-5903 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-F9-A4JJ       TCGA-G7-6789       TCGA-G7-6790       TCGA-G7-6792 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-G7-6793       TCGA-G7-6795       TCGA-G7-6796       TCGA-G7-7501 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-G7-7502       TCGA-G7-A4TM       TCGA-GL-6846       TCGA-GL-7773 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-GL-7966       TCGA-GL-8500       TCGA-GL-A4EM       TCGA-GL-A59T 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-HE-7128       TCGA-HE-7130       TCGA-HE-A5NJ       TCGA-IA-A40U 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-IA-A40X       TCGA-IA-A40Y       TCGA-IZ-8195       TCGA-IZ-8196 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-IZ-A6M9       TCGA-J7-6720       TCGA-J7-8537       TCGA-KL-8323 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-KL-8324       TCGA-KL-8327       TCGA-KL-8328       TCGA-KL-8331 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-KL-8332       TCGA-KL-8333       TCGA-KL-8334       TCGA-KL-8335 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-KL-8336       TCGA-KL-8338       TCGA-KL-8339       TCGA-KL-8340 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-KL-8341       TCGA-KL-8342       TCGA-KL-8343       TCGA-KL-8344 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-KL-8345       TCGA-KM-8438       TCGA-KM-8439       TCGA-KM-8441 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-KM-8442       TCGA-KM-8639       TCGA-KN-8418       TCGA-KN-8419 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-KN-8422       TCGA-KN-8423       TCGA-KN-8426       TCGA-KN-8427 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-KN-8428       TCGA-KN-8429       TCGA-KN-8430       TCGA-KN-8431 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-KN-8432       TCGA-KN-8433       TCGA-KN-8434       TCGA-KN-8436 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-KN-8437       TCGA-KO-8404       TCGA-KO-8405       TCGA-KO-8408 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-KO-8409       TCGA-KO-8410       TCGA-KO-8413       TCGA-KO-8415 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-KO-8416       TCGA-KO-8417       TCGA-KV-A6GD       TCGA-KV-A6GE 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-P4-A5E6       TCGA-P4-A5E7       TCGA-P4-A5E8       TCGA-P4-A5EA 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-PJ-A5Z8       TCGA-PJ-A5Z9       TCGA-Q2-A5QZ 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC4A8 MUTATED        0      0      0      1      1
  SLC4A8 WILD-TYPE     26     43     62     99     45
D43V10, multiclass
[1] "Remove cluster labels:" "SLC4A8 MUTATED"        
clus
  SLC4A8 MUTATED SLC4A8 WILD-TYPE 
               2              275 
      TCGA-A3-3317       TCGA-A3-3358       TCGA-A3-3387       TCGA-A4-7286 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-A4-7287       TCGA-A4-7288       TCGA-A4-7585       TCGA-A4-7734 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-A4-7828       TCGA-A4-7915       TCGA-A4-7996       TCGA-A4-7997 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-A4-8098       TCGA-A4-8310       TCGA-A4-8312       TCGA-A4-8515 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-A4-8517       TCGA-A4-8518       TCGA-A4-8630       TCGA-A4-A57E 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-A4-A5XZ       TCGA-A4-A5Y0       TCGA-A4-A5Y1       TCGA-AK-3440 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-AK-3458       TCGA-AK-3465       TCGA-AL-3466       TCGA-AL-3472 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-AL-3473       TCGA-AL-7173       TCGA-AT-A5NU       TCGA-B0-4700 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-B0-4706       TCGA-B0-4710       TCGA-B0-4712       TCGA-B0-4810 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-B0-4811       TCGA-B0-4836       TCGA-B0-4837       TCGA-B0-4852 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-B0-5080       TCGA-B0-5085       TCGA-B0-5088       TCGA-B0-5399 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-B0-5691       TCGA-B0-5692       TCGA-B0-5693       TCGA-B0-5694 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-B0-5695       TCGA-B0-5696       TCGA-B0-5699       TCGA-B0-5702 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-B0-5705       TCGA-B0-5709       TCGA-B1-5398       TCGA-B1-A47N 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-B1-A654       TCGA-B1-A656       TCGA-B1-A657       TCGA-B2-3923 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-B2-3924       TCGA-B2-5633       TCGA-B2-5635       TCGA-B3-3925 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-B3-4104       TCGA-B3-8121       TCGA-B4-5377       TCGA-B4-5836 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-B8-4621       TCGA-B8-5545       TCGA-B8-5550       TCGA-B8-5551 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-B8-5552       TCGA-B8-5553       TCGA-B9-4115       TCGA-B9-4117 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-B9-5156       TCGA-B9-A44B       TCGA-B9-A5W9       TCGA-B9-A69E 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-BP-4173       TCGA-BP-4340       TCGA-BP-4761       TCGA-BP-4770 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-BP-4787       TCGA-BP-4789       TCGA-BP-4790       TCGA-BP-4804 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-BP-4807       TCGA-BP-4961       TCGA-BP-4967       TCGA-BP-4968 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-BP-4970       TCGA-BP-4974       TCGA-BP-4976       TCGA-BP-4981 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-BP-4982       TCGA-BP-4985       TCGA-BP-4988       TCGA-BP-4989 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-BP-4992       TCGA-BP-4995       TCGA-BP-4998       TCGA-BP-5001 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-BP-5008       TCGA-BP-5009       TCGA-BQ-5876       TCGA-BQ-5877 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-BQ-5878       TCGA-BQ-5879       TCGA-BQ-5880       TCGA-BQ-5881 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-BQ-5882       TCGA-BQ-5883       TCGA-BQ-5884       TCGA-BQ-5886 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-BQ-5887       TCGA-BQ-5888       TCGA-BQ-5889       TCGA-BQ-5890 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-BQ-5891       TCGA-BQ-5892       TCGA-BQ-5893       TCGA-BQ-5894 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-BQ-7044       TCGA-BQ-7045       TCGA-BQ-7046       TCGA-BQ-7048 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-BQ-7050       TCGA-BQ-7051       TCGA-BQ-7053       TCGA-BQ-7055 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-BQ-7058       TCGA-BQ-7059       TCGA-BQ-7060       TCGA-BQ-7061 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-BQ-7062       TCGA-CJ-4870       TCGA-CJ-4875       TCGA-CJ-4876 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-CJ-4878       TCGA-CJ-4881       TCGA-CJ-4887       TCGA-CJ-4889 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-CJ-4890       TCGA-CJ-4895       TCGA-CJ-4900       TCGA-CJ-5671 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-CJ-5675       TCGA-CJ-5676       TCGA-CJ-5681       TCGA-CJ-5683 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-CJ-5686       TCGA-CJ-6031       TCGA-CJ-6032       TCGA-CW-5585 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-CW-5589       TCGA-CW-6087       TCGA-CZ-4854       TCGA-CZ-4857 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-CZ-4858       TCGA-CZ-5453       TCGA-CZ-5454       TCGA-CZ-5455 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-CZ-5457       TCGA-CZ-5459       TCGA-CZ-5462       TCGA-CZ-5463 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-CZ-5467       TCGA-CZ-5469       TCGA-CZ-5470       TCGA-CZ-5989 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-DV-5565       TCGA-DV-5566       TCGA-DV-5569       TCGA-DW-5560 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-DW-5561       TCGA-DW-7834       TCGA-DW-7837       TCGA-DW-7838 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-DW-7839       TCGA-DW-7840       TCGA-DW-7842       TCGA-DZ-6131 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-DZ-6132       TCGA-DZ-6133       TCGA-DZ-6134       TCGA-DZ-6135 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-EU-5904       TCGA-EV-5901       TCGA-EV-5902       TCGA-EV-5903 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-F9-A4JJ       TCGA-G7-6789       TCGA-G7-6790       TCGA-G7-6792 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-G7-6793       TCGA-G7-6795       TCGA-G7-6796       TCGA-G7-7501 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-G7-7502       TCGA-G7-A4TM       TCGA-GL-6846       TCGA-GL-7773 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-GL-7966       TCGA-GL-8500       TCGA-GL-A4EM       TCGA-GL-A59T 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-HE-7128       TCGA-HE-7130       TCGA-HE-A5NJ       TCGA-IA-A40U 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-IA-A40X       TCGA-IA-A40Y       TCGA-IZ-8195       TCGA-IZ-8196 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-IZ-A6M9       TCGA-J7-6720       TCGA-J7-8537       TCGA-KL-8323 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-KL-8324       TCGA-KL-8327       TCGA-KL-8328       TCGA-KL-8331 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-KL-8332       TCGA-KL-8333       TCGA-KL-8334       TCGA-KL-8335 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-KL-8336       TCGA-KL-8338       TCGA-KL-8339       TCGA-KL-8340 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-KL-8341       TCGA-KL-8342       TCGA-KL-8343       TCGA-KL-8344 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-KL-8345       TCGA-KM-8438       TCGA-KM-8439       TCGA-KM-8441 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-KM-8442       TCGA-KM-8639       TCGA-KN-8418       TCGA-KN-8419 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-KN-8422       TCGA-KN-8423       TCGA-KN-8426       TCGA-KN-8427 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-KN-8428       TCGA-KN-8429       TCGA-KN-8430       TCGA-KN-8431 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-KN-8432       TCGA-KN-8433       TCGA-KN-8434       TCGA-KN-8436 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-KN-8437       TCGA-KO-8404       TCGA-KO-8405       TCGA-KO-8408 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-KO-8409       TCGA-KO-8410       TCGA-KO-8413       TCGA-KO-8415 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-KO-8416       TCGA-KO-8417       TCGA-KV-A6GD       TCGA-KV-A6GE 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-P4-A5E6       TCGA-P4-A5E7       TCGA-P4-A5E8       TCGA-P4-A5EA 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 
      TCGA-PJ-A5Z8       TCGA-PJ-A5Z9       TCGA-Q2-A5QZ 
"SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" "SLC4A8 WILD-TYPE" 

Clustering(44) Variable = RUFY3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RUFY3 MUTATED        1      0      0      1
  RUFY3 WILD-TYPE     20     17      9     13
D44V1, multiclass
[1] "Remove cluster labels:" "RUFY3 MUTATED"         
clus
  RUFY3 MUTATED RUFY3 WILD-TYPE 
              2              59 
     TCGA-A3-3311      TCGA-A3-3316      TCGA-A3-3317      TCGA-A3-3322 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-A3-3323      TCGA-A3-3326      TCGA-A3-3331      TCGA-A3-3347 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-A3-3349      TCGA-A3-3362      TCGA-A3-3363      TCGA-A3-3365 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-A3-3374      TCGA-A3-3380      TCGA-A3-3383      TCGA-AK-3427 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-AK-3440      TCGA-AK-3443      TCGA-AK-3453      TCGA-AK-3455 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-AK-3456      TCGA-AK-3465      TCGA-AL-3466      TCGA-AL-3467 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-AL-3472      TCGA-AL-3473      TCGA-AS-3777      TCGA-AS-3778 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-B2-3923      TCGA-B2-3924      TCGA-B2-4098      TCGA-B3-3926 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-B3-4103      TCGA-B3-4104      TCGA-B8-4143      TCGA-B8-4148 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-B8-4151      TCGA-B8-4154      TCGA-B8-4619      TCGA-B8-4620 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-B9-4113      TCGA-B9-4114      TCGA-B9-4115      TCGA-B9-4116 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-B9-4117      TCGA-BP-4161      TCGA-BP-4162      TCGA-BP-4163 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-BP-4164      TCGA-BP-4167      TCGA-CJ-4634      TCGA-CJ-4636 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-CJ-4637      TCGA-CJ-4638      TCGA-CJ-4639      TCGA-CJ-4640 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-CJ-4641      TCGA-CJ-4643      TCGA-CJ-4644 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RUFY3 MUTATED        1      0      1      0      0
  RUFY3 WILD-TYPE     10     17     13     10      9
D44V2, multiclass
[1] "Remove cluster labels:" "RUFY3 MUTATED"         
clus
  RUFY3 MUTATED RUFY3 WILD-TYPE 
              2              59 
     TCGA-A3-3311      TCGA-A3-3316      TCGA-A3-3317      TCGA-A3-3322 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-A3-3323      TCGA-A3-3326      TCGA-A3-3331      TCGA-A3-3347 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-A3-3349      TCGA-A3-3362      TCGA-A3-3363      TCGA-A3-3365 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-A3-3374      TCGA-A3-3380      TCGA-A3-3383      TCGA-AK-3427 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-AK-3440      TCGA-AK-3443      TCGA-AK-3453      TCGA-AK-3455 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-AK-3456      TCGA-AK-3465      TCGA-AL-3466      TCGA-AL-3467 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-AL-3472      TCGA-AL-3473      TCGA-AS-3777      TCGA-AS-3778 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-B2-3923      TCGA-B2-3924      TCGA-B2-4098      TCGA-B3-3926 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-B3-4103      TCGA-B3-4104      TCGA-B8-4143      TCGA-B8-4148 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-B8-4151      TCGA-B8-4154      TCGA-B8-4619      TCGA-B8-4620 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-B9-4113      TCGA-B9-4114      TCGA-B9-4115      TCGA-B9-4116 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-B9-4117      TCGA-BP-4161      TCGA-BP-4162      TCGA-BP-4163 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-BP-4164      TCGA-BP-4167      TCGA-CJ-4634      TCGA-CJ-4636 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-CJ-4637      TCGA-CJ-4638      TCGA-CJ-4639      TCGA-CJ-4640 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-CJ-4641      TCGA-CJ-4643      TCGA-CJ-4644 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RUFY3 MUTATED        4      2      1
  RUFY3 WILD-TYPE    176    240    242
D44V3, multiclass
        clus
vv       RUFY3 MUTATED RUFY3 WILD-TYPE
  CLUS_1             4             176
  CLUS_2             2             240
  CLUS_3             1             242
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RUFY3 MUTATED        1      1      2
  RUFY3 WILD-TYPE    102    254    117
D44V4, multiclass
        clus
vv       RUFY3 MUTATED RUFY3 WILD-TYPE
  CLUS_1             1             102
  CLUS_2             1             254
  CLUS_3             2             117
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RUFY3 MUTATED        2      1      1      3
  RUFY3 WILD-TYPE     96    173    244    146
D44V5, multiclass
        clus
vv       RUFY3 MUTATED RUFY3 WILD-TYPE
  CLUS_1             2              96
  CLUS_2             1             173
  CLUS_3             1             244
  CLUS_4             3             146
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RUFY3 MUTATED        2      0      1      1      0      3
  RUFY3 WILD-TYPE     78     90    176    137     90     88
D44V6, multiclass
        clus
vv       RUFY3 MUTATED RUFY3 WILD-TYPE
  CLUS_1             2              78
  CLUS_2             0              90
  CLUS_3             1             176
  CLUS_4             1             137
  CLUS_5             0              90
  CLUS_6             3              88
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RUFY3 MUTATED        5      0      2
  RUFY3 WILD-TYPE    209    148    294
D44V7, multiclass
        clus
vv       RUFY3 MUTATED RUFY3 WILD-TYPE
  CLUS_1             5             209
  CLUS_2             0             148
  CLUS_3             2             294
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RUFY3 MUTATED        2      2      3
  RUFY3 WILD-TYPE     70    474    107
D44V8, multiclass
        clus
vv       RUFY3 MUTATED RUFY3 WILD-TYPE
  CLUS_1             2              70
  CLUS_2             2             474
  CLUS_3             3             107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RUFY3 MUTATED        1      0      0      0
  RUFY3 WILD-TYPE     75     60     42     99
D44V9, multiclass
[1] "Remove cluster labels:" "RUFY3 MUTATED"         
clus
  RUFY3 MUTATED RUFY3 WILD-TYPE 
              1             276 
     TCGA-A3-3317      TCGA-A3-3358      TCGA-A3-3387      TCGA-A4-7286 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-A4-7287      TCGA-A4-7288      TCGA-A4-7585      TCGA-A4-7734 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-A4-7828      TCGA-A4-7915      TCGA-A4-7996      TCGA-A4-7997 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-A4-8098      TCGA-A4-8310      TCGA-A4-8312      TCGA-A4-8515 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-A4-8517      TCGA-A4-8518      TCGA-A4-8630      TCGA-A4-A57E 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-A4-A5XZ      TCGA-A4-A5Y0      TCGA-A4-A5Y1      TCGA-AK-3440 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-AK-3458      TCGA-AK-3465      TCGA-AL-3466      TCGA-AL-3472 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-AL-3473      TCGA-AL-7173      TCGA-AT-A5NU      TCGA-B0-4700 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-B0-4706      TCGA-B0-4710      TCGA-B0-4712      TCGA-B0-4810 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-B0-4811      TCGA-B0-4836      TCGA-B0-4837      TCGA-B0-4852 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-B0-5080      TCGA-B0-5085      TCGA-B0-5088      TCGA-B0-5399 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-B0-5691      TCGA-B0-5692      TCGA-B0-5693      TCGA-B0-5694 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-B0-5695      TCGA-B0-5696      TCGA-B0-5699      TCGA-B0-5702 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-B0-5705      TCGA-B0-5709      TCGA-B1-5398      TCGA-B1-A47N 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-B1-A654      TCGA-B1-A656      TCGA-B1-A657      TCGA-B2-3923 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-B2-3924      TCGA-B2-5633      TCGA-B2-5635      TCGA-B3-4104 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-B3-8121      TCGA-B4-5377      TCGA-B4-5836      TCGA-B8-4621 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-B8-5545      TCGA-B8-5550      TCGA-B8-5551      TCGA-B8-5552 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-B8-5553      TCGA-B9-4115      TCGA-B9-4117      TCGA-B9-5156 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-B9-A44B      TCGA-B9-A5W9      TCGA-B9-A69E      TCGA-BP-4173 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-BP-4340      TCGA-BP-4761      TCGA-BP-4770      TCGA-BP-4787 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-BP-4789      TCGA-BP-4790      TCGA-BP-4804      TCGA-BP-4807 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-BP-4961      TCGA-BP-4967      TCGA-BP-4968      TCGA-BP-4970 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-BP-4974      TCGA-BP-4976      TCGA-BP-4981      TCGA-BP-4982 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-BP-4985      TCGA-BP-4988      TCGA-BP-4989      TCGA-BP-4992 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-BP-4995      TCGA-BP-4998      TCGA-BP-5001      TCGA-BP-5008 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-BP-5009      TCGA-BQ-5876      TCGA-BQ-5877      TCGA-BQ-5878 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-BQ-5879      TCGA-BQ-5880      TCGA-BQ-5881      TCGA-BQ-5882 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-BQ-5883      TCGA-BQ-5884      TCGA-BQ-5886      TCGA-BQ-5887 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-BQ-5888      TCGA-BQ-5889      TCGA-BQ-5890      TCGA-BQ-5891 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-BQ-5892      TCGA-BQ-5893      TCGA-BQ-5894      TCGA-BQ-7044 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-BQ-7045      TCGA-BQ-7046      TCGA-BQ-7048      TCGA-BQ-7050 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-BQ-7051      TCGA-BQ-7053      TCGA-BQ-7055      TCGA-BQ-7058 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-BQ-7059      TCGA-BQ-7060      TCGA-BQ-7061      TCGA-BQ-7062 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-CJ-4870      TCGA-CJ-4875      TCGA-CJ-4876      TCGA-CJ-4878 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-CJ-4881      TCGA-CJ-4887      TCGA-CJ-4889      TCGA-CJ-4890 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-CJ-4895      TCGA-CJ-4900      TCGA-CJ-5671      TCGA-CJ-5675 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-CJ-5676      TCGA-CJ-5681      TCGA-CJ-5683      TCGA-CJ-5686 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-CJ-6031      TCGA-CJ-6032      TCGA-CW-5585      TCGA-CW-5589 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-CW-6087      TCGA-CZ-4854      TCGA-CZ-4857      TCGA-CZ-4858 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-CZ-5453      TCGA-CZ-5454      TCGA-CZ-5455      TCGA-CZ-5457 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-CZ-5459      TCGA-CZ-5462      TCGA-CZ-5463      TCGA-CZ-5466 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-CZ-5467      TCGA-CZ-5469      TCGA-CZ-5470      TCGA-CZ-5989 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-DV-5565      TCGA-DV-5566      TCGA-DV-5569      TCGA-DW-5560 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-DW-5561      TCGA-DW-7834      TCGA-DW-7837      TCGA-DW-7838 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-DW-7839      TCGA-DW-7840      TCGA-DW-7842      TCGA-DZ-6131 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-DZ-6132      TCGA-DZ-6133      TCGA-DZ-6134      TCGA-DZ-6135 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-EU-5904      TCGA-EV-5901      TCGA-EV-5902      TCGA-EV-5903 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-F9-A4JJ      TCGA-G7-6789      TCGA-G7-6790      TCGA-G7-6792 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-G7-6793      TCGA-G7-6795      TCGA-G7-6796      TCGA-G7-7501 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-G7-7502      TCGA-G7-A4TM      TCGA-GL-6846      TCGA-GL-7773 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-GL-7966      TCGA-GL-8500      TCGA-GL-A4EM      TCGA-GL-A59T 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-HE-7128      TCGA-HE-7130      TCGA-HE-A5NJ      TCGA-IA-A40U 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-IA-A40X      TCGA-IA-A40Y      TCGA-IZ-8195      TCGA-IZ-8196 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-IZ-A6M9      TCGA-J7-6720      TCGA-J7-8537      TCGA-KL-8323 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-KL-8324      TCGA-KL-8327      TCGA-KL-8328      TCGA-KL-8331 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-KL-8332      TCGA-KL-8333      TCGA-KL-8334      TCGA-KL-8335 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-KL-8336      TCGA-KL-8338      TCGA-KL-8339      TCGA-KL-8340 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-KL-8341      TCGA-KL-8342      TCGA-KL-8343      TCGA-KL-8344 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-KL-8345      TCGA-KM-8438      TCGA-KM-8439      TCGA-KM-8441 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-KM-8442      TCGA-KM-8639      TCGA-KN-8418      TCGA-KN-8419 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-KN-8422      TCGA-KN-8423      TCGA-KN-8424      TCGA-KN-8426 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-KN-8427      TCGA-KN-8428      TCGA-KN-8429      TCGA-KN-8430 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-KN-8431      TCGA-KN-8432      TCGA-KN-8433      TCGA-KN-8434 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-KN-8436      TCGA-KN-8437      TCGA-KO-8404      TCGA-KO-8405 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-KO-8408      TCGA-KO-8409      TCGA-KO-8410      TCGA-KO-8413 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-KO-8415      TCGA-KO-8416      TCGA-KO-8417      TCGA-KV-A6GD 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-KV-A6GE      TCGA-P4-A5E6      TCGA-P4-A5E7      TCGA-P4-A5E8 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-P4-A5EA      TCGA-PJ-A5Z8      TCGA-PJ-A5Z9      TCGA-Q2-A5QZ 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RUFY3 MUTATED        0      1      0      0      0
  RUFY3 WILD-TYPE     26     42     62    100     46
D44V10, multiclass
[1] "Remove cluster labels:" "RUFY3 MUTATED"         
clus
  RUFY3 MUTATED RUFY3 WILD-TYPE 
              1             276 
     TCGA-A3-3317      TCGA-A3-3358      TCGA-A3-3387      TCGA-A4-7286 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-A4-7287      TCGA-A4-7288      TCGA-A4-7585      TCGA-A4-7734 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-A4-7828      TCGA-A4-7915      TCGA-A4-7996      TCGA-A4-7997 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-A4-8098      TCGA-A4-8310      TCGA-A4-8312      TCGA-A4-8515 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-A4-8517      TCGA-A4-8518      TCGA-A4-8630      TCGA-A4-A57E 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-A4-A5XZ      TCGA-A4-A5Y0      TCGA-A4-A5Y1      TCGA-AK-3440 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-AK-3458      TCGA-AK-3465      TCGA-AL-3466      TCGA-AL-3472 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-AL-3473      TCGA-AL-7173      TCGA-AT-A5NU      TCGA-B0-4700 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-B0-4706      TCGA-B0-4710      TCGA-B0-4712      TCGA-B0-4810 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-B0-4811      TCGA-B0-4836      TCGA-B0-4837      TCGA-B0-4852 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-B0-5080      TCGA-B0-5085      TCGA-B0-5088      TCGA-B0-5399 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-B0-5691      TCGA-B0-5692      TCGA-B0-5693      TCGA-B0-5694 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-B0-5695      TCGA-B0-5696      TCGA-B0-5699      TCGA-B0-5702 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-B0-5705      TCGA-B0-5709      TCGA-B1-5398      TCGA-B1-A47N 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-B1-A654      TCGA-B1-A656      TCGA-B1-A657      TCGA-B2-3923 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-B2-3924      TCGA-B2-5633      TCGA-B2-5635      TCGA-B3-4104 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-B3-8121      TCGA-B4-5377      TCGA-B4-5836      TCGA-B8-4621 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-B8-5545      TCGA-B8-5550      TCGA-B8-5551      TCGA-B8-5552 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-B8-5553      TCGA-B9-4115      TCGA-B9-4117      TCGA-B9-5156 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-B9-A44B      TCGA-B9-A5W9      TCGA-B9-A69E      TCGA-BP-4173 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-BP-4340      TCGA-BP-4761      TCGA-BP-4770      TCGA-BP-4787 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-BP-4789      TCGA-BP-4790      TCGA-BP-4804      TCGA-BP-4807 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-BP-4961      TCGA-BP-4967      TCGA-BP-4968      TCGA-BP-4970 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-BP-4974      TCGA-BP-4976      TCGA-BP-4981      TCGA-BP-4982 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-BP-4985      TCGA-BP-4988      TCGA-BP-4989      TCGA-BP-4992 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-BP-4995      TCGA-BP-4998      TCGA-BP-5001      TCGA-BP-5008 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-BP-5009      TCGA-BQ-5876      TCGA-BQ-5877      TCGA-BQ-5878 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-BQ-5879      TCGA-BQ-5880      TCGA-BQ-5881      TCGA-BQ-5882 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-BQ-5883      TCGA-BQ-5884      TCGA-BQ-5886      TCGA-BQ-5887 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-BQ-5888      TCGA-BQ-5889      TCGA-BQ-5890      TCGA-BQ-5891 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-BQ-5892      TCGA-BQ-5893      TCGA-BQ-5894      TCGA-BQ-7044 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-BQ-7045      TCGA-BQ-7046      TCGA-BQ-7048      TCGA-BQ-7050 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-BQ-7051      TCGA-BQ-7053      TCGA-BQ-7055      TCGA-BQ-7058 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-BQ-7059      TCGA-BQ-7060      TCGA-BQ-7061      TCGA-BQ-7062 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-CJ-4870      TCGA-CJ-4875      TCGA-CJ-4876      TCGA-CJ-4878 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-CJ-4881      TCGA-CJ-4887      TCGA-CJ-4889      TCGA-CJ-4890 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-CJ-4895      TCGA-CJ-4900      TCGA-CJ-5671      TCGA-CJ-5675 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-CJ-5676      TCGA-CJ-5681      TCGA-CJ-5683      TCGA-CJ-5686 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-CJ-6031      TCGA-CJ-6032      TCGA-CW-5585      TCGA-CW-5589 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-CW-6087      TCGA-CZ-4854      TCGA-CZ-4857      TCGA-CZ-4858 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-CZ-5453      TCGA-CZ-5454      TCGA-CZ-5455      TCGA-CZ-5457 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-CZ-5459      TCGA-CZ-5462      TCGA-CZ-5463      TCGA-CZ-5466 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-CZ-5467      TCGA-CZ-5469      TCGA-CZ-5470      TCGA-CZ-5989 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-DV-5565      TCGA-DV-5566      TCGA-DV-5569      TCGA-DW-5560 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-DW-5561      TCGA-DW-7834      TCGA-DW-7837      TCGA-DW-7838 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-DW-7839      TCGA-DW-7840      TCGA-DW-7842      TCGA-DZ-6131 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-DZ-6132      TCGA-DZ-6133      TCGA-DZ-6134      TCGA-DZ-6135 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-EU-5904      TCGA-EV-5901      TCGA-EV-5902      TCGA-EV-5903 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-F9-A4JJ      TCGA-G7-6789      TCGA-G7-6790      TCGA-G7-6792 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-G7-6793      TCGA-G7-6795      TCGA-G7-6796      TCGA-G7-7501 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-G7-7502      TCGA-G7-A4TM      TCGA-GL-6846      TCGA-GL-7773 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-GL-7966      TCGA-GL-8500      TCGA-GL-A4EM      TCGA-GL-A59T 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-HE-7128      TCGA-HE-7130      TCGA-HE-A5NJ      TCGA-IA-A40U 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-IA-A40X      TCGA-IA-A40Y      TCGA-IZ-8195      TCGA-IZ-8196 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-IZ-A6M9      TCGA-J7-6720      TCGA-J7-8537      TCGA-KL-8323 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-KL-8324      TCGA-KL-8327      TCGA-KL-8328      TCGA-KL-8331 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-KL-8332      TCGA-KL-8333      TCGA-KL-8334      TCGA-KL-8335 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-KL-8336      TCGA-KL-8338      TCGA-KL-8339      TCGA-KL-8340 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-KL-8341      TCGA-KL-8342      TCGA-KL-8343      TCGA-KL-8344 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-KL-8345      TCGA-KM-8438      TCGA-KM-8439      TCGA-KM-8441 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-KM-8442      TCGA-KM-8639      TCGA-KN-8418      TCGA-KN-8419 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-KN-8422      TCGA-KN-8423      TCGA-KN-8424      TCGA-KN-8426 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-KN-8427      TCGA-KN-8428      TCGA-KN-8429      TCGA-KN-8430 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-KN-8431      TCGA-KN-8432      TCGA-KN-8433      TCGA-KN-8434 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-KN-8436      TCGA-KN-8437      TCGA-KO-8404      TCGA-KO-8405 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-KO-8408      TCGA-KO-8409      TCGA-KO-8410      TCGA-KO-8413 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-KO-8415      TCGA-KO-8416      TCGA-KO-8417      TCGA-KV-A6GD 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-KV-A6GE      TCGA-P4-A5E6      TCGA-P4-A5E7      TCGA-P4-A5E8 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 
     TCGA-P4-A5EA      TCGA-PJ-A5Z8      TCGA-PJ-A5Z9      TCGA-Q2-A5QZ 
"RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" "RUFY3 WILD-TYPE" 

Clustering(45) Variable = PCK1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCK1 MUTATED        1      0      0      1
  PCK1 WILD-TYPE     20     17      9     13
D45V1, multiclass
[1] "Remove cluster labels:" "PCK1 MUTATED"          
clus
  PCK1 MUTATED PCK1 WILD-TYPE 
             2             59 
    TCGA-A3-3311     TCGA-A3-3316     TCGA-A3-3317     TCGA-A3-3322 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-A3-3323     TCGA-A3-3331     TCGA-A3-3347     TCGA-A3-3349 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-A3-3362     TCGA-A3-3363     TCGA-A3-3365     TCGA-A3-3374 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-A3-3380     TCGA-A3-3383     TCGA-AK-3427     TCGA-AK-3440 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-AK-3443     TCGA-AK-3453     TCGA-AK-3455     TCGA-AK-3456 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-AK-3465     TCGA-AL-3466     TCGA-AL-3467     TCGA-AL-3473 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-AS-3777     TCGA-AS-3778     TCGA-B2-3923     TCGA-B2-3924 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-B2-4098     TCGA-B2-4099     TCGA-B3-3925     TCGA-B3-3926 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-B3-4103     TCGA-B3-4104     TCGA-B8-4143     TCGA-B8-4148 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-B8-4151     TCGA-B8-4154     TCGA-B8-4619     TCGA-B8-4620 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-B9-4113     TCGA-B9-4114     TCGA-B9-4115     TCGA-B9-4116 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-B9-4117     TCGA-BP-4161     TCGA-BP-4162     TCGA-BP-4163 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-BP-4164     TCGA-BP-4167     TCGA-CJ-4634     TCGA-CJ-4636 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-CJ-4637     TCGA-CJ-4638     TCGA-CJ-4639     TCGA-CJ-4640 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-CJ-4641     TCGA-CJ-4643     TCGA-CJ-4644 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PCK1 MUTATED        1      0      1      0      0
  PCK1 WILD-TYPE     10     17     13     10      9
D45V2, multiclass
[1] "Remove cluster labels:" "PCK1 MUTATED"          
clus
  PCK1 MUTATED PCK1 WILD-TYPE 
             2             59 
    TCGA-A3-3311     TCGA-A3-3316     TCGA-A3-3317     TCGA-A3-3322 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-A3-3323     TCGA-A3-3331     TCGA-A3-3347     TCGA-A3-3349 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-A3-3362     TCGA-A3-3363     TCGA-A3-3365     TCGA-A3-3374 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-A3-3380     TCGA-A3-3383     TCGA-AK-3427     TCGA-AK-3440 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-AK-3443     TCGA-AK-3453     TCGA-AK-3455     TCGA-AK-3456 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-AK-3465     TCGA-AL-3466     TCGA-AL-3467     TCGA-AL-3473 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-AS-3777     TCGA-AS-3778     TCGA-B2-3923     TCGA-B2-3924 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-B2-4098     TCGA-B2-4099     TCGA-B3-3925     TCGA-B3-3926 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-B3-4103     TCGA-B3-4104     TCGA-B8-4143     TCGA-B8-4148 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-B8-4151     TCGA-B8-4154     TCGA-B8-4619     TCGA-B8-4620 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-B9-4113     TCGA-B9-4114     TCGA-B9-4115     TCGA-B9-4116 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-B9-4117     TCGA-BP-4161     TCGA-BP-4162     TCGA-BP-4163 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-BP-4164     TCGA-BP-4167     TCGA-CJ-4634     TCGA-CJ-4636 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-CJ-4637     TCGA-CJ-4638     TCGA-CJ-4639     TCGA-CJ-4640 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-CJ-4641     TCGA-CJ-4643     TCGA-CJ-4644 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PCK1 MUTATED        1      2      3
  PCK1 WILD-TYPE    179    240    240
D45V3, multiclass
        clus
vv       PCK1 MUTATED PCK1 WILD-TYPE
  CLUS_1            1            179
  CLUS_2            2            240
  CLUS_3            3            240
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PCK1 MUTATED        0      3      0
  PCK1 WILD-TYPE    103    252    119
D45V4, multiclass
        clus
vv       PCK1 MUTATED PCK1 WILD-TYPE
  CLUS_1            0            103
  CLUS_2            3            252
  CLUS_3            0            119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCK1 MUTATED        0      2      3      1
  PCK1 WILD-TYPE     98    172    242    148
D45V5, multiclass
        clus
vv       PCK1 MUTATED PCK1 WILD-TYPE
  CLUS_1            0             98
  CLUS_2            2            172
  CLUS_3            3            242
  CLUS_4            1            148
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PCK1 MUTATED        0      0      1      2      2      1
  PCK1 WILD-TYPE     80     90    176    136     88     90
D45V6, multiclass
        clus
vv       PCK1 MUTATED PCK1 WILD-TYPE
  CLUS_1            0             80
  CLUS_2            0             90
  CLUS_3            1            176
  CLUS_4            2            136
  CLUS_5            2             88
  CLUS_6            1             90
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PCK1 MUTATED        1      1      4
  PCK1 WILD-TYPE    213    147    292
D45V7, multiclass
        clus
vv       PCK1 MUTATED PCK1 WILD-TYPE
  CLUS_1            1            213
  CLUS_2            1            147
  CLUS_3            4            292
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PCK1 MUTATED        0      5      1
  PCK1 WILD-TYPE     72    471    109
D45V8, multiclass
        clus
vv       PCK1 MUTATED PCK1 WILD-TYPE
  CLUS_1            0             72
  CLUS_2            5            471
  CLUS_3            1            109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCK1 MUTATED        1      0      0      0
  PCK1 WILD-TYPE     75     60     42     99
D45V9, multiclass
[1] "Remove cluster labels:" "PCK1 MUTATED"          
clus
  PCK1 MUTATED PCK1 WILD-TYPE 
             1            276 
    TCGA-A3-3317     TCGA-A3-3358     TCGA-A3-3387     TCGA-A4-7286 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-A4-7287     TCGA-A4-7288     TCGA-A4-7585     TCGA-A4-7734 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-A4-7828     TCGA-A4-7915     TCGA-A4-7996     TCGA-A4-7997 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-A4-8098     TCGA-A4-8310     TCGA-A4-8312     TCGA-A4-8515 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-A4-8517     TCGA-A4-8518     TCGA-A4-8630     TCGA-A4-A57E 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-A4-A5XZ     TCGA-A4-A5Y0     TCGA-A4-A5Y1     TCGA-AK-3440 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-AK-3458     TCGA-AK-3465     TCGA-AL-3466     TCGA-AL-3473 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-AL-7173     TCGA-AT-A5NU     TCGA-B0-4700     TCGA-B0-4706 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-B0-4710     TCGA-B0-4712     TCGA-B0-4810     TCGA-B0-4811 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-B0-4836     TCGA-B0-4837     TCGA-B0-4852     TCGA-B0-5080 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-B0-5085     TCGA-B0-5088     TCGA-B0-5399     TCGA-B0-5691 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-B0-5692     TCGA-B0-5693     TCGA-B0-5694     TCGA-B0-5695 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-B0-5696     TCGA-B0-5699     TCGA-B0-5702     TCGA-B0-5705 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-B0-5709     TCGA-B1-5398     TCGA-B1-A47N     TCGA-B1-A654 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-B1-A656     TCGA-B1-A657     TCGA-B2-3923     TCGA-B2-3924 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-B2-5633     TCGA-B2-5635     TCGA-B3-3925     TCGA-B3-4104 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-B3-8121     TCGA-B4-5377     TCGA-B4-5836     TCGA-B8-4621 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-B8-5545     TCGA-B8-5550     TCGA-B8-5551     TCGA-B8-5552 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-B8-5553     TCGA-B9-4115     TCGA-B9-4117     TCGA-B9-5156 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-B9-A44B     TCGA-B9-A5W9     TCGA-B9-A69E     TCGA-BP-4173 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-BP-4340     TCGA-BP-4761     TCGA-BP-4770     TCGA-BP-4787 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-BP-4789     TCGA-BP-4790     TCGA-BP-4804     TCGA-BP-4807 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-BP-4961     TCGA-BP-4967     TCGA-BP-4968     TCGA-BP-4970 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-BP-4974     TCGA-BP-4976     TCGA-BP-4981     TCGA-BP-4982 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-BP-4985     TCGA-BP-4988     TCGA-BP-4989     TCGA-BP-4992 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-BP-4995     TCGA-BP-4998     TCGA-BP-5001     TCGA-BP-5008 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-BP-5009     TCGA-BQ-5876     TCGA-BQ-5877     TCGA-BQ-5878 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-BQ-5879     TCGA-BQ-5880     TCGA-BQ-5881     TCGA-BQ-5882 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-BQ-5883     TCGA-BQ-5884     TCGA-BQ-5886     TCGA-BQ-5887 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-BQ-5888     TCGA-BQ-5889     TCGA-BQ-5890     TCGA-BQ-5891 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-BQ-5892     TCGA-BQ-5893     TCGA-BQ-5894     TCGA-BQ-7044 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-BQ-7045     TCGA-BQ-7046     TCGA-BQ-7048     TCGA-BQ-7050 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-BQ-7051     TCGA-BQ-7053     TCGA-BQ-7055     TCGA-BQ-7058 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-BQ-7059     TCGA-BQ-7060     TCGA-BQ-7061     TCGA-BQ-7062 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-CJ-4870     TCGA-CJ-4875     TCGA-CJ-4876     TCGA-CJ-4878 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-CJ-4881     TCGA-CJ-4887     TCGA-CJ-4889     TCGA-CJ-4890 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-CJ-4895     TCGA-CJ-4900     TCGA-CJ-5671     TCGA-CJ-5675 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-CJ-5676     TCGA-CJ-5681     TCGA-CJ-5683     TCGA-CJ-5686 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-CJ-6031     TCGA-CJ-6032     TCGA-CW-5585     TCGA-CW-5589 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-CW-6087     TCGA-CZ-4854     TCGA-CZ-4857     TCGA-CZ-4858 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-CZ-5453     TCGA-CZ-5454     TCGA-CZ-5455     TCGA-CZ-5457 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-CZ-5459     TCGA-CZ-5462     TCGA-CZ-5463     TCGA-CZ-5466 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-CZ-5467     TCGA-CZ-5469     TCGA-CZ-5470     TCGA-CZ-5989 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-DV-5565     TCGA-DV-5566     TCGA-DV-5569     TCGA-DW-5560 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-DW-5561     TCGA-DW-7834     TCGA-DW-7837     TCGA-DW-7838 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-DW-7839     TCGA-DW-7840     TCGA-DW-7842     TCGA-DZ-6131 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-DZ-6132     TCGA-DZ-6133     TCGA-DZ-6134     TCGA-DZ-6135 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-EU-5904     TCGA-EV-5901     TCGA-EV-5902     TCGA-EV-5903 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-F9-A4JJ     TCGA-G7-6789     TCGA-G7-6790     TCGA-G7-6792 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-G7-6793     TCGA-G7-6795     TCGA-G7-6796     TCGA-G7-7501 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-G7-7502     TCGA-G7-A4TM     TCGA-GL-6846     TCGA-GL-7773 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-GL-7966     TCGA-GL-8500     TCGA-GL-A4EM     TCGA-GL-A59T 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-HE-7128     TCGA-HE-7130     TCGA-HE-A5NJ     TCGA-IA-A40U 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-IA-A40X     TCGA-IA-A40Y     TCGA-IZ-8195     TCGA-IZ-8196 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-IZ-A6M9     TCGA-J7-6720     TCGA-J7-8537     TCGA-KL-8323 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-KL-8324     TCGA-KL-8327     TCGA-KL-8328     TCGA-KL-8331 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-KL-8332     TCGA-KL-8333     TCGA-KL-8334     TCGA-KL-8335 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-KL-8336     TCGA-KL-8338     TCGA-KL-8339     TCGA-KL-8340 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-KL-8341     TCGA-KL-8342     TCGA-KL-8343     TCGA-KL-8344 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-KL-8345     TCGA-KM-8438     TCGA-KM-8439     TCGA-KM-8441 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-KM-8442     TCGA-KM-8639     TCGA-KN-8418     TCGA-KN-8419 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-KN-8422     TCGA-KN-8423     TCGA-KN-8424     TCGA-KN-8426 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-KN-8427     TCGA-KN-8428     TCGA-KN-8429     TCGA-KN-8430 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-KN-8431     TCGA-KN-8432     TCGA-KN-8433     TCGA-KN-8434 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-KN-8436     TCGA-KN-8437     TCGA-KO-8404     TCGA-KO-8405 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-KO-8408     TCGA-KO-8409     TCGA-KO-8410     TCGA-KO-8413 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-KO-8415     TCGA-KO-8416     TCGA-KO-8417     TCGA-KV-A6GD 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-KV-A6GE     TCGA-P4-A5E6     TCGA-P4-A5E7     TCGA-P4-A5E8 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-P4-A5EA     TCGA-PJ-A5Z8     TCGA-PJ-A5Z9     TCGA-Q2-A5QZ 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PCK1 MUTATED        1      0      0      0      0
  PCK1 WILD-TYPE     25     43     62    100     46
D45V10, multiclass
[1] "Remove cluster labels:" "PCK1 MUTATED"          
clus
  PCK1 MUTATED PCK1 WILD-TYPE 
             1            276 
    TCGA-A3-3317     TCGA-A3-3358     TCGA-A3-3387     TCGA-A4-7286 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-A4-7287     TCGA-A4-7288     TCGA-A4-7585     TCGA-A4-7734 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-A4-7828     TCGA-A4-7915     TCGA-A4-7996     TCGA-A4-7997 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-A4-8098     TCGA-A4-8310     TCGA-A4-8312     TCGA-A4-8515 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-A4-8517     TCGA-A4-8518     TCGA-A4-8630     TCGA-A4-A57E 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-A4-A5XZ     TCGA-A4-A5Y0     TCGA-A4-A5Y1     TCGA-AK-3440 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-AK-3458     TCGA-AK-3465     TCGA-AL-3466     TCGA-AL-3473 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-AL-7173     TCGA-AT-A5NU     TCGA-B0-4700     TCGA-B0-4706 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-B0-4710     TCGA-B0-4712     TCGA-B0-4810     TCGA-B0-4811 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-B0-4836     TCGA-B0-4837     TCGA-B0-4852     TCGA-B0-5080 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-B0-5085     TCGA-B0-5088     TCGA-B0-5399     TCGA-B0-5691 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-B0-5692     TCGA-B0-5693     TCGA-B0-5694     TCGA-B0-5695 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-B0-5696     TCGA-B0-5699     TCGA-B0-5702     TCGA-B0-5705 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-B0-5709     TCGA-B1-5398     TCGA-B1-A47N     TCGA-B1-A654 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-B1-A656     TCGA-B1-A657     TCGA-B2-3923     TCGA-B2-3924 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-B2-5633     TCGA-B2-5635     TCGA-B3-3925     TCGA-B3-4104 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-B3-8121     TCGA-B4-5377     TCGA-B4-5836     TCGA-B8-4621 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-B8-5545     TCGA-B8-5550     TCGA-B8-5551     TCGA-B8-5552 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-B8-5553     TCGA-B9-4115     TCGA-B9-4117     TCGA-B9-5156 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-B9-A44B     TCGA-B9-A5W9     TCGA-B9-A69E     TCGA-BP-4173 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-BP-4340     TCGA-BP-4761     TCGA-BP-4770     TCGA-BP-4787 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-BP-4789     TCGA-BP-4790     TCGA-BP-4804     TCGA-BP-4807 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-BP-4961     TCGA-BP-4967     TCGA-BP-4968     TCGA-BP-4970 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-BP-4974     TCGA-BP-4976     TCGA-BP-4981     TCGA-BP-4982 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-BP-4985     TCGA-BP-4988     TCGA-BP-4989     TCGA-BP-4992 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-BP-4995     TCGA-BP-4998     TCGA-BP-5001     TCGA-BP-5008 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-BP-5009     TCGA-BQ-5876     TCGA-BQ-5877     TCGA-BQ-5878 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-BQ-5879     TCGA-BQ-5880     TCGA-BQ-5881     TCGA-BQ-5882 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-BQ-5883     TCGA-BQ-5884     TCGA-BQ-5886     TCGA-BQ-5887 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-BQ-5888     TCGA-BQ-5889     TCGA-BQ-5890     TCGA-BQ-5891 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-BQ-5892     TCGA-BQ-5893     TCGA-BQ-5894     TCGA-BQ-7044 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-BQ-7045     TCGA-BQ-7046     TCGA-BQ-7048     TCGA-BQ-7050 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-BQ-7051     TCGA-BQ-7053     TCGA-BQ-7055     TCGA-BQ-7058 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-BQ-7059     TCGA-BQ-7060     TCGA-BQ-7061     TCGA-BQ-7062 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-CJ-4870     TCGA-CJ-4875     TCGA-CJ-4876     TCGA-CJ-4878 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-CJ-4881     TCGA-CJ-4887     TCGA-CJ-4889     TCGA-CJ-4890 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-CJ-4895     TCGA-CJ-4900     TCGA-CJ-5671     TCGA-CJ-5675 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-CJ-5676     TCGA-CJ-5681     TCGA-CJ-5683     TCGA-CJ-5686 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-CJ-6031     TCGA-CJ-6032     TCGA-CW-5585     TCGA-CW-5589 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-CW-6087     TCGA-CZ-4854     TCGA-CZ-4857     TCGA-CZ-4858 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-CZ-5453     TCGA-CZ-5454     TCGA-CZ-5455     TCGA-CZ-5457 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-CZ-5459     TCGA-CZ-5462     TCGA-CZ-5463     TCGA-CZ-5466 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-CZ-5467     TCGA-CZ-5469     TCGA-CZ-5470     TCGA-CZ-5989 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-DV-5565     TCGA-DV-5566     TCGA-DV-5569     TCGA-DW-5560 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-DW-5561     TCGA-DW-7834     TCGA-DW-7837     TCGA-DW-7838 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-DW-7839     TCGA-DW-7840     TCGA-DW-7842     TCGA-DZ-6131 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-DZ-6132     TCGA-DZ-6133     TCGA-DZ-6134     TCGA-DZ-6135 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-EU-5904     TCGA-EV-5901     TCGA-EV-5902     TCGA-EV-5903 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-F9-A4JJ     TCGA-G7-6789     TCGA-G7-6790     TCGA-G7-6792 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-G7-6793     TCGA-G7-6795     TCGA-G7-6796     TCGA-G7-7501 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-G7-7502     TCGA-G7-A4TM     TCGA-GL-6846     TCGA-GL-7773 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-GL-7966     TCGA-GL-8500     TCGA-GL-A4EM     TCGA-GL-A59T 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-HE-7128     TCGA-HE-7130     TCGA-HE-A5NJ     TCGA-IA-A40U 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-IA-A40X     TCGA-IA-A40Y     TCGA-IZ-8195     TCGA-IZ-8196 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-IZ-A6M9     TCGA-J7-6720     TCGA-J7-8537     TCGA-KL-8323 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-KL-8324     TCGA-KL-8327     TCGA-KL-8328     TCGA-KL-8331 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-KL-8332     TCGA-KL-8333     TCGA-KL-8334     TCGA-KL-8335 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-KL-8336     TCGA-KL-8338     TCGA-KL-8339     TCGA-KL-8340 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-KL-8341     TCGA-KL-8342     TCGA-KL-8343     TCGA-KL-8344 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-KL-8345     TCGA-KM-8438     TCGA-KM-8439     TCGA-KM-8441 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-KM-8442     TCGA-KM-8639     TCGA-KN-8418     TCGA-KN-8419 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-KN-8422     TCGA-KN-8423     TCGA-KN-8424     TCGA-KN-8426 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-KN-8427     TCGA-KN-8428     TCGA-KN-8429     TCGA-KN-8430 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-KN-8431     TCGA-KN-8432     TCGA-KN-8433     TCGA-KN-8434 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-KN-8436     TCGA-KN-8437     TCGA-KO-8404     TCGA-KO-8405 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-KO-8408     TCGA-KO-8409     TCGA-KO-8410     TCGA-KO-8413 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-KO-8415     TCGA-KO-8416     TCGA-KO-8417     TCGA-KV-A6GD 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-KV-A6GE     TCGA-P4-A5E6     TCGA-P4-A5E7     TCGA-P4-A5E8 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-P4-A5EA     TCGA-PJ-A5Z8     TCGA-PJ-A5Z9     TCGA-Q2-A5QZ 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 

Clustering(46) Variable = TXNIP MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TXNIP MUTATED        0      0      0      0
  TXNIP WILD-TYPE     21     17      9     14
D46V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TXNIP MUTATED        0      0      0      0      0
  TXNIP WILD-TYPE     11     17     14     10      9
D46V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TXNIP MUTATED        0      4      4
  TXNIP WILD-TYPE    180    238    239
D46V3, multiclass
        clus
vv       TXNIP MUTATED TXNIP WILD-TYPE
  CLUS_1             0             180
  CLUS_2             4             238
  CLUS_3             4             239
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TXNIP MUTATED        2      5      0
  TXNIP WILD-TYPE    101    250    119
D46V4, multiclass
        clus
vv       TXNIP MUTATED TXNIP WILD-TYPE
  CLUS_1             2             101
  CLUS_2             5             250
  CLUS_3             0             119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TXNIP MUTATED        2      2      4      0
  TXNIP WILD-TYPE     96    172    241    149
D46V5, multiclass
        clus
vv       TXNIP MUTATED TXNIP WILD-TYPE
  CLUS_1             2              96
  CLUS_2             2             172
  CLUS_3             4             241
  CLUS_4             0             149
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TXNIP MUTATED        0      2      2      3      1      0
  TXNIP WILD-TYPE     80     88    175    135     89     91
D46V6, multiclass
        clus
vv       TXNIP MUTATED TXNIP WILD-TYPE
  CLUS_1             0              80
  CLUS_2             2              88
  CLUS_3             2             175
  CLUS_4             3             135
  CLUS_5             1              89
  CLUS_6             0              91
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TXNIP MUTATED        1      1      6
  TXNIP WILD-TYPE    213    147    290
D46V7, multiclass
        clus
vv       TXNIP MUTATED TXNIP WILD-TYPE
  CLUS_1             1             213
  CLUS_2             1             147
  CLUS_3             6             290
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TXNIP MUTATED        0      8      0
  TXNIP WILD-TYPE     72    468    110
D46V8, multiclass
        clus
vv       TXNIP MUTATED TXNIP WILD-TYPE
  CLUS_1             0              72
  CLUS_2             8             468
  CLUS_3             0             110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TXNIP MUTATED        0      1      1      2
  TXNIP WILD-TYPE     76     59     41     97
D46V9, multiclass
        clus
vv       TXNIP MUTATED TXNIP WILD-TYPE
  CLUS_1             0              76
  CLUS_2             1              59
  CLUS_3             1              41
  CLUS_4             2              97
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TXNIP MUTATED        0      0      2      2      0
  TXNIP WILD-TYPE     26     43     60     98     46
D46V10, multiclass
        clus
vv       TXNIP MUTATED TXNIP WILD-TYPE
  CLUS_1             0              26
  CLUS_2             0              43
  CLUS_3             2              60
  CLUS_4             2              98
  CLUS_5             0              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(47) Variable = RNF128 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF128 MUTATED        0      0      0      1
  RNF128 WILD-TYPE     21     17      9     13
D47V1, multiclass
[1] "Remove cluster labels:" "RNF128 MUTATED"        
clus
  RNF128 MUTATED RNF128 WILD-TYPE 
               1               60 
      TCGA-A3-3311       TCGA-A3-3316       TCGA-A3-3317       TCGA-A3-3322 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-A3-3323       TCGA-A3-3326       TCGA-A3-3331       TCGA-A3-3347 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-A3-3349       TCGA-A3-3362       TCGA-A3-3363       TCGA-A3-3365 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-A3-3374       TCGA-A3-3380       TCGA-A3-3383       TCGA-AK-3427 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-AK-3440       TCGA-AK-3443       TCGA-AK-3453       TCGA-AK-3455 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-AK-3456       TCGA-AK-3465       TCGA-AL-3466       TCGA-AL-3467 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-AL-3472       TCGA-AL-3473       TCGA-AS-3777       TCGA-AS-3778 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-B2-3923       TCGA-B2-3924       TCGA-B2-4098       TCGA-B2-4099 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-B3-3925       TCGA-B3-3926       TCGA-B3-4103       TCGA-B3-4104 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-B8-4143       TCGA-B8-4148       TCGA-B8-4151       TCGA-B8-4154 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-B8-4619       TCGA-B8-4620       TCGA-B9-4113       TCGA-B9-4114 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-B9-4115       TCGA-B9-4116       TCGA-BP-4161       TCGA-BP-4162 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-BP-4163       TCGA-BP-4164       TCGA-BP-4167       TCGA-CJ-4634 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-CJ-4636       TCGA-CJ-4637       TCGA-CJ-4638       TCGA-CJ-4639 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-CJ-4640       TCGA-CJ-4641       TCGA-CJ-4643       TCGA-CJ-4644 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RNF128 MUTATED        0      0      1      0      0
  RNF128 WILD-TYPE     11     17     13     10      9
D47V2, multiclass
[1] "Remove cluster labels:" "RNF128 MUTATED"        
clus
  RNF128 MUTATED RNF128 WILD-TYPE 
               1               60 
      TCGA-A3-3311       TCGA-A3-3316       TCGA-A3-3317       TCGA-A3-3322 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-A3-3323       TCGA-A3-3326       TCGA-A3-3331       TCGA-A3-3347 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-A3-3349       TCGA-A3-3362       TCGA-A3-3363       TCGA-A3-3365 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-A3-3374       TCGA-A3-3380       TCGA-A3-3383       TCGA-AK-3427 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-AK-3440       TCGA-AK-3443       TCGA-AK-3453       TCGA-AK-3455 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-AK-3456       TCGA-AK-3465       TCGA-AL-3466       TCGA-AL-3467 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-AL-3472       TCGA-AL-3473       TCGA-AS-3777       TCGA-AS-3778 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-B2-3923       TCGA-B2-3924       TCGA-B2-4098       TCGA-B2-4099 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-B3-3925       TCGA-B3-3926       TCGA-B3-4103       TCGA-B3-4104 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-B8-4143       TCGA-B8-4148       TCGA-B8-4151       TCGA-B8-4154 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-B8-4619       TCGA-B8-4620       TCGA-B9-4113       TCGA-B9-4114 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-B9-4115       TCGA-B9-4116       TCGA-BP-4161       TCGA-BP-4162 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-BP-4163       TCGA-BP-4164       TCGA-BP-4167       TCGA-CJ-4634 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-CJ-4636       TCGA-CJ-4637       TCGA-CJ-4638       TCGA-CJ-4639 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-CJ-4640       TCGA-CJ-4641       TCGA-CJ-4643       TCGA-CJ-4644 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RNF128 MUTATED        1      3      1
  RNF128 WILD-TYPE    179    239    242
D47V3, multiclass
        clus
vv       RNF128 MUTATED RNF128 WILD-TYPE
  CLUS_1              1              179
  CLUS_2              3              239
  CLUS_3              1              242
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RNF128 MUTATED        2      1      0
  RNF128 WILD-TYPE    101    254    119
D47V4, multiclass
        clus
vv       RNF128 MUTATED RNF128 WILD-TYPE
  CLUS_1              2              101
  CLUS_2              1              254
  CLUS_3              0              119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF128 MUTATED        1      1      1      2
  RNF128 WILD-TYPE     97    173    244    147
D47V5, multiclass
        clus
vv       RNF128 MUTATED RNF128 WILD-TYPE
  CLUS_1              1               97
  CLUS_2              1              173
  CLUS_3              1              244
  CLUS_4              2              147
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RNF128 MUTATED        1      1      2      0      0      1
  RNF128 WILD-TYPE     79     89    175    138     90     90
D47V6, multiclass
        clus
vv       RNF128 MUTATED RNF128 WILD-TYPE
  CLUS_1              1               79
  CLUS_2              1               89
  CLUS_3              2              175
  CLUS_4              0              138
  CLUS_5              0               90
  CLUS_6              1               90
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RNF128 MUTATED        3      0      2
  RNF128 WILD-TYPE    211    148    294
D47V7, multiclass
        clus
vv       RNF128 MUTATED RNF128 WILD-TYPE
  CLUS_1              3              211
  CLUS_2              0              148
  CLUS_3              2              294
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RNF128 MUTATED        0      4      1
  RNF128 WILD-TYPE     72    472    109
D47V8, multiclass
        clus
vv       RNF128 MUTATED RNF128 WILD-TYPE
  CLUS_1              0               72
  CLUS_2              4              472
  CLUS_3              1              109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF128 MUTATED        1      1      0      0
  RNF128 WILD-TYPE     75     59     42     99
D47V9, multiclass
[1] "Remove cluster labels:" "RNF128 MUTATED"        
clus
  RNF128 MUTATED RNF128 WILD-TYPE 
               2              275 
      TCGA-A3-3317       TCGA-A3-3358       TCGA-A3-3387       TCGA-A4-7286 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-A4-7287       TCGA-A4-7288       TCGA-A4-7585       TCGA-A4-7734 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-A4-7828       TCGA-A4-7915       TCGA-A4-7996       TCGA-A4-7997 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-A4-8098       TCGA-A4-8310       TCGA-A4-8515       TCGA-A4-8517 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-A4-8518       TCGA-A4-8630       TCGA-A4-A57E       TCGA-A4-A5XZ 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-A4-A5Y0       TCGA-A4-A5Y1       TCGA-AK-3440       TCGA-AK-3458 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-AK-3465       TCGA-AL-3466       TCGA-AL-3472       TCGA-AL-3473 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-AL-7173       TCGA-AT-A5NU       TCGA-B0-4700       TCGA-B0-4706 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-B0-4710       TCGA-B0-4712       TCGA-B0-4810       TCGA-B0-4811 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-B0-4836       TCGA-B0-4837       TCGA-B0-4852       TCGA-B0-5080 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-B0-5085       TCGA-B0-5088       TCGA-B0-5399       TCGA-B0-5691 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-B0-5692       TCGA-B0-5693       TCGA-B0-5694       TCGA-B0-5695 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-B0-5696       TCGA-B0-5699       TCGA-B0-5702       TCGA-B0-5705 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-B0-5709       TCGA-B1-5398       TCGA-B1-A47N       TCGA-B1-A654 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-B1-A656       TCGA-B1-A657       TCGA-B2-3923       TCGA-B2-3924 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-B2-5633       TCGA-B2-5635       TCGA-B3-3925       TCGA-B3-4104 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-B3-8121       TCGA-B4-5377       TCGA-B4-5836       TCGA-B8-4621 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-B8-5545       TCGA-B8-5550       TCGA-B8-5551       TCGA-B8-5552 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-B8-5553       TCGA-B9-4115       TCGA-B9-5156       TCGA-B9-A44B 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-B9-A5W9       TCGA-B9-A69E       TCGA-BP-4173       TCGA-BP-4340 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-BP-4761       TCGA-BP-4770       TCGA-BP-4787       TCGA-BP-4789 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-BP-4790       TCGA-BP-4804       TCGA-BP-4807       TCGA-BP-4961 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-BP-4967       TCGA-BP-4968       TCGA-BP-4970       TCGA-BP-4974 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-BP-4976       TCGA-BP-4981       TCGA-BP-4982       TCGA-BP-4985 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-BP-4988       TCGA-BP-4989       TCGA-BP-4992       TCGA-BP-4995 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-BP-4998       TCGA-BP-5001       TCGA-BP-5008       TCGA-BP-5009 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-BQ-5876       TCGA-BQ-5877       TCGA-BQ-5878       TCGA-BQ-5879 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-BQ-5880       TCGA-BQ-5881       TCGA-BQ-5882       TCGA-BQ-5883 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-BQ-5884       TCGA-BQ-5886       TCGA-BQ-5887       TCGA-BQ-5888 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-BQ-5889       TCGA-BQ-5890       TCGA-BQ-5891       TCGA-BQ-5892 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-BQ-5893       TCGA-BQ-5894       TCGA-BQ-7044       TCGA-BQ-7045 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-BQ-7046       TCGA-BQ-7048       TCGA-BQ-7050       TCGA-BQ-7051 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-BQ-7053       TCGA-BQ-7055       TCGA-BQ-7058       TCGA-BQ-7059 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-BQ-7060       TCGA-BQ-7061       TCGA-BQ-7062       TCGA-CJ-4870 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-CJ-4875       TCGA-CJ-4876       TCGA-CJ-4878       TCGA-CJ-4881 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-CJ-4887       TCGA-CJ-4889       TCGA-CJ-4890       TCGA-CJ-4895 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-CJ-4900       TCGA-CJ-5671       TCGA-CJ-5675       TCGA-CJ-5676 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-CJ-5681       TCGA-CJ-5683       TCGA-CJ-5686       TCGA-CJ-6031 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-CJ-6032       TCGA-CW-5585       TCGA-CW-5589       TCGA-CW-6087 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-CZ-4854       TCGA-CZ-4857       TCGA-CZ-4858       TCGA-CZ-5453 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-CZ-5454       TCGA-CZ-5455       TCGA-CZ-5457       TCGA-CZ-5459 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-CZ-5462       TCGA-CZ-5463       TCGA-CZ-5466       TCGA-CZ-5467 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-CZ-5469       TCGA-CZ-5470       TCGA-CZ-5989       TCGA-DV-5565 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-DV-5566       TCGA-DV-5569       TCGA-DW-5560       TCGA-DW-5561 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-DW-7834       TCGA-DW-7837       TCGA-DW-7838       TCGA-DW-7839 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-DW-7840       TCGA-DW-7842       TCGA-DZ-6131       TCGA-DZ-6132 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-DZ-6133       TCGA-DZ-6134       TCGA-DZ-6135       TCGA-EU-5904 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-EV-5901       TCGA-EV-5902       TCGA-EV-5903       TCGA-F9-A4JJ 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-G7-6789       TCGA-G7-6790       TCGA-G7-6792       TCGA-G7-6793 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-G7-6795       TCGA-G7-6796       TCGA-G7-7501       TCGA-G7-7502 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-G7-A4TM       TCGA-GL-6846       TCGA-GL-7773       TCGA-GL-7966 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-GL-8500       TCGA-GL-A4EM       TCGA-GL-A59T       TCGA-HE-7128 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-HE-7130       TCGA-HE-A5NJ       TCGA-IA-A40U       TCGA-IA-A40X 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-IA-A40Y       TCGA-IZ-8195       TCGA-IZ-8196       TCGA-IZ-A6M9 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-J7-6720       TCGA-J7-8537       TCGA-KL-8323       TCGA-KL-8324 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-KL-8327       TCGA-KL-8328       TCGA-KL-8331       TCGA-KL-8332 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-KL-8333       TCGA-KL-8334       TCGA-KL-8335       TCGA-KL-8336 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-KL-8338       TCGA-KL-8339       TCGA-KL-8340       TCGA-KL-8341 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-KL-8342       TCGA-KL-8343       TCGA-KL-8344       TCGA-KL-8345 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-KM-8438       TCGA-KM-8439       TCGA-KM-8441       TCGA-KM-8442 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-KM-8639       TCGA-KN-8418       TCGA-KN-8419       TCGA-KN-8422 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-KN-8423       TCGA-KN-8424       TCGA-KN-8426       TCGA-KN-8427 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-KN-8428       TCGA-KN-8429       TCGA-KN-8430       TCGA-KN-8431 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-KN-8432       TCGA-KN-8433       TCGA-KN-8434       TCGA-KN-8436 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-KN-8437       TCGA-KO-8404       TCGA-KO-8405       TCGA-KO-8408 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-KO-8409       TCGA-KO-8410       TCGA-KO-8413       TCGA-KO-8415 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-KO-8416       TCGA-KO-8417       TCGA-KV-A6GD       TCGA-KV-A6GE 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-P4-A5E6       TCGA-P4-A5E7       TCGA-P4-A5E8       TCGA-P4-A5EA 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-PJ-A5Z8       TCGA-PJ-A5Z9       TCGA-Q2-A5QZ 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RNF128 MUTATED        0      1      1      0      0
  RNF128 WILD-TYPE     26     42     61    100     46
D47V10, multiclass
[1] "Remove cluster labels:" "RNF128 MUTATED"        
clus
  RNF128 MUTATED RNF128 WILD-TYPE 
               2              275 
      TCGA-A3-3317       TCGA-A3-3358       TCGA-A3-3387       TCGA-A4-7286 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-A4-7287       TCGA-A4-7288       TCGA-A4-7585       TCGA-A4-7734 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-A4-7828       TCGA-A4-7915       TCGA-A4-7996       TCGA-A4-7997 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-A4-8098       TCGA-A4-8310       TCGA-A4-8515       TCGA-A4-8517 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-A4-8518       TCGA-A4-8630       TCGA-A4-A57E       TCGA-A4-A5XZ 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-A4-A5Y0       TCGA-A4-A5Y1       TCGA-AK-3440       TCGA-AK-3458 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-AK-3465       TCGA-AL-3466       TCGA-AL-3472       TCGA-AL-3473 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-AL-7173       TCGA-AT-A5NU       TCGA-B0-4700       TCGA-B0-4706 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-B0-4710       TCGA-B0-4712       TCGA-B0-4810       TCGA-B0-4811 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-B0-4836       TCGA-B0-4837       TCGA-B0-4852       TCGA-B0-5080 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-B0-5085       TCGA-B0-5088       TCGA-B0-5399       TCGA-B0-5691 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-B0-5692       TCGA-B0-5693       TCGA-B0-5694       TCGA-B0-5695 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-B0-5696       TCGA-B0-5699       TCGA-B0-5702       TCGA-B0-5705 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-B0-5709       TCGA-B1-5398       TCGA-B1-A47N       TCGA-B1-A654 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-B1-A656       TCGA-B1-A657       TCGA-B2-3923       TCGA-B2-3924 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-B2-5633       TCGA-B2-5635       TCGA-B3-3925       TCGA-B3-4104 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-B3-8121       TCGA-B4-5377       TCGA-B4-5836       TCGA-B8-4621 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-B8-5545       TCGA-B8-5550       TCGA-B8-5551       TCGA-B8-5552 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-B8-5553       TCGA-B9-4115       TCGA-B9-5156       TCGA-B9-A44B 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-B9-A5W9       TCGA-B9-A69E       TCGA-BP-4173       TCGA-BP-4340 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-BP-4761       TCGA-BP-4770       TCGA-BP-4787       TCGA-BP-4789 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-BP-4790       TCGA-BP-4804       TCGA-BP-4807       TCGA-BP-4961 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-BP-4967       TCGA-BP-4968       TCGA-BP-4970       TCGA-BP-4974 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-BP-4976       TCGA-BP-4981       TCGA-BP-4982       TCGA-BP-4985 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-BP-4988       TCGA-BP-4989       TCGA-BP-4992       TCGA-BP-4995 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-BP-4998       TCGA-BP-5001       TCGA-BP-5008       TCGA-BP-5009 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-BQ-5876       TCGA-BQ-5877       TCGA-BQ-5878       TCGA-BQ-5879 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-BQ-5880       TCGA-BQ-5881       TCGA-BQ-5882       TCGA-BQ-5883 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-BQ-5884       TCGA-BQ-5886       TCGA-BQ-5887       TCGA-BQ-5888 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-BQ-5889       TCGA-BQ-5890       TCGA-BQ-5891       TCGA-BQ-5892 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-BQ-5893       TCGA-BQ-5894       TCGA-BQ-7044       TCGA-BQ-7045 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-BQ-7046       TCGA-BQ-7048       TCGA-BQ-7050       TCGA-BQ-7051 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-BQ-7053       TCGA-BQ-7055       TCGA-BQ-7058       TCGA-BQ-7059 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-BQ-7060       TCGA-BQ-7061       TCGA-BQ-7062       TCGA-CJ-4870 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-CJ-4875       TCGA-CJ-4876       TCGA-CJ-4878       TCGA-CJ-4881 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-CJ-4887       TCGA-CJ-4889       TCGA-CJ-4890       TCGA-CJ-4895 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-CJ-4900       TCGA-CJ-5671       TCGA-CJ-5675       TCGA-CJ-5676 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-CJ-5681       TCGA-CJ-5683       TCGA-CJ-5686       TCGA-CJ-6031 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-CJ-6032       TCGA-CW-5585       TCGA-CW-5589       TCGA-CW-6087 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-CZ-4854       TCGA-CZ-4857       TCGA-CZ-4858       TCGA-CZ-5453 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-CZ-5454       TCGA-CZ-5455       TCGA-CZ-5457       TCGA-CZ-5459 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-CZ-5462       TCGA-CZ-5463       TCGA-CZ-5466       TCGA-CZ-5467 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-CZ-5469       TCGA-CZ-5470       TCGA-CZ-5989       TCGA-DV-5565 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-DV-5566       TCGA-DV-5569       TCGA-DW-5560       TCGA-DW-5561 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-DW-7834       TCGA-DW-7837       TCGA-DW-7838       TCGA-DW-7839 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-DW-7840       TCGA-DW-7842       TCGA-DZ-6131       TCGA-DZ-6132 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-DZ-6133       TCGA-DZ-6134       TCGA-DZ-6135       TCGA-EU-5904 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-EV-5901       TCGA-EV-5902       TCGA-EV-5903       TCGA-F9-A4JJ 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-G7-6789       TCGA-G7-6790       TCGA-G7-6792       TCGA-G7-6793 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-G7-6795       TCGA-G7-6796       TCGA-G7-7501       TCGA-G7-7502 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-G7-A4TM       TCGA-GL-6846       TCGA-GL-7773       TCGA-GL-7966 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-GL-8500       TCGA-GL-A4EM       TCGA-GL-A59T       TCGA-HE-7128 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-HE-7130       TCGA-HE-A5NJ       TCGA-IA-A40U       TCGA-IA-A40X 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-IA-A40Y       TCGA-IZ-8195       TCGA-IZ-8196       TCGA-IZ-A6M9 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-J7-6720       TCGA-J7-8537       TCGA-KL-8323       TCGA-KL-8324 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-KL-8327       TCGA-KL-8328       TCGA-KL-8331       TCGA-KL-8332 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-KL-8333       TCGA-KL-8334       TCGA-KL-8335       TCGA-KL-8336 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-KL-8338       TCGA-KL-8339       TCGA-KL-8340       TCGA-KL-8341 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-KL-8342       TCGA-KL-8343       TCGA-KL-8344       TCGA-KL-8345 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-KM-8438       TCGA-KM-8439       TCGA-KM-8441       TCGA-KM-8442 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-KM-8639       TCGA-KN-8418       TCGA-KN-8419       TCGA-KN-8422 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-KN-8423       TCGA-KN-8424       TCGA-KN-8426       TCGA-KN-8427 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-KN-8428       TCGA-KN-8429       TCGA-KN-8430       TCGA-KN-8431 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-KN-8432       TCGA-KN-8433       TCGA-KN-8434       TCGA-KN-8436 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-KN-8437       TCGA-KO-8404       TCGA-KO-8405       TCGA-KO-8408 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-KO-8409       TCGA-KO-8410       TCGA-KO-8413       TCGA-KO-8415 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-KO-8416       TCGA-KO-8417       TCGA-KV-A6GD       TCGA-KV-A6GE 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-P4-A5E6       TCGA-P4-A5E7       TCGA-P4-A5E8       TCGA-P4-A5EA 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-PJ-A5Z8       TCGA-PJ-A5Z9       TCGA-Q2-A5QZ 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 

Clustering(48) Variable = ZFYVE26 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFYVE26 MUTATED        1      0      0      1
  ZFYVE26 WILD-TYPE     20     17      9     13
D48V1, multiclass
[1] "Remove cluster labels:" "ZFYVE26 MUTATED"       
clus
  ZFYVE26 MUTATED ZFYVE26 WILD-TYPE 
                2                59 
       TCGA-A3-3311        TCGA-A3-3316        TCGA-A3-3317        TCGA-A3-3322 
"ZFYVE26 WILD-TYPE" "ZFYVE26 WILD-TYPE" "ZFYVE26 WILD-TYPE" "ZFYVE26 WILD-TYPE" 
       TCGA-A3-3323        TCGA-A3-3326        TCGA-A3-3331        TCGA-A3-3347 
"ZFYVE26 WILD-TYPE" "ZFYVE26 WILD-TYPE" "ZFYVE26 WILD-TYPE" "ZFYVE26 WILD-TYPE" 
       TCGA-A3-3349        TCGA-A3-3362        TCGA-A3-3363        TCGA-A3-3365 
"ZFYVE26 WILD-TYPE" "ZFYVE26 WILD-TYPE" "ZFYVE26 WILD-TYPE" "ZFYVE26 WILD-TYPE" 
       TCGA-A3-3374        TCGA-A3-3380        TCGA-A3-3383        TCGA-AK-3427 
"ZFYVE26 WILD-TYPE" "ZFYVE26 WILD-TYPE" "ZFYVE26 WILD-TYPE" "ZFYVE26 WILD-TYPE" 
       TCGA-AK-3440        TCGA-AK-3443        TCGA-AK-3453        TCGA-AK-3455 
"ZFYVE26 WILD-TYPE" "ZFYVE26 WILD-TYPE" "ZFYVE26 WILD-TYPE" "ZFYVE26 WILD-TYPE" 
       TCGA-AK-3456        TCGA-AK-3465        TCGA-AL-3466        TCGA-AL-3467 
"ZFYVE26 WILD-TYPE" "ZFYVE26 WILD-TYPE" "ZFYVE26 WILD-TYPE" "ZFYVE26 WILD-TYPE" 
       TCGA-AL-3472        TCGA-AL-3473        TCGA-AS-3777        TCGA-AS-3778 
"ZFYVE26 WILD-TYPE" "ZFYVE26 WILD-TYPE" "ZFYVE26 WILD-TYPE" "ZFYVE26 WILD-TYPE" 
       TCGA-B2-3923        TCGA-B2-4098        TCGA-B2-4099        TCGA-B3-3925 
"ZFYVE26 WILD-TYPE" "ZFYVE26 WILD-TYPE" "ZFYVE26 WILD-TYPE" "ZFYVE26 WILD-TYPE" 
       TCGA-B3-3926        TCGA-B3-4103        TCGA-B3-4104        TCGA-B8-4143 
"ZFYVE26 WILD-TYPE" "ZFYVE26 WILD-TYPE" "ZFYVE26 WILD-TYPE" "ZFYVE26 WILD-TYPE" 
       TCGA-B8-4148        TCGA-B8-4151        TCGA-B8-4154        TCGA-B8-4619 
"ZFYVE26 WILD-TYPE" "ZFYVE26 WILD-TYPE" "ZFYVE26 WILD-TYPE" "ZFYVE26 WILD-TYPE" 
       TCGA-B8-4620        TCGA-B9-4113        TCGA-B9-4114        TCGA-B9-4116 
"ZFYVE26 WILD-TYPE" "ZFYVE26 WILD-TYPE" "ZFYVE26 WILD-TYPE" "ZFYVE26 WILD-TYPE" 
       TCGA-B9-4117        TCGA-BP-4161        TCGA-BP-4162        TCGA-BP-4163 
"ZFYVE26 WILD-TYPE" "ZFYVE26 WILD-TYPE" "ZFYVE26 WILD-TYPE" "ZFYVE26 WILD-TYPE" 
       TCGA-BP-4164        TCGA-BP-4167        TCGA-CJ-4634        TCGA-CJ-4636 
"ZFYVE26 WILD-TYPE" "ZFYVE26 WILD-TYPE" "ZFYVE26 WILD-TYPE" "ZFYVE26 WILD-TYPE" 
       TCGA-CJ-4637        TCGA-CJ-4638        TCGA-CJ-4639        TCGA-CJ-4640 
"ZFYVE26 WILD-TYPE" "ZFYVE26 WILD-TYPE" "ZFYVE26 WILD-TYPE" "ZFYVE26 WILD-TYPE" 
       TCGA-CJ-4641        TCGA-CJ-4643        TCGA-CJ-4644 
"ZFYVE26 WILD-TYPE" "ZFYVE26 WILD-TYPE" "ZFYVE26 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZFYVE26 MUTATED        1      0      1      0      0
  ZFYVE26 WILD-TYPE     10     17     13     10      9
D48V2, multiclass
[1] "Remove cluster labels:" "ZFYVE26 MUTATED"       
clus
  ZFYVE26 MUTATED ZFYVE26 WILD-TYPE 
                2                59 
       TCGA-A3-3311        TCGA-A3-3316        TCGA-A3-3317        TCGA-A3-3322 
"ZFYVE26 WILD-TYPE" "ZFYVE26 WILD-TYPE" "ZFYVE26 WILD-TYPE" "ZFYVE26 WILD-TYPE" 
       TCGA-A3-3323        TCGA-A3-3326        TCGA-A3-3331        TCGA-A3-3347 
"ZFYVE26 WILD-TYPE" "ZFYVE26 WILD-TYPE" "ZFYVE26 WILD-TYPE" "ZFYVE26 WILD-TYPE" 
       TCGA-A3-3349        TCGA-A3-3362        TCGA-A3-3363        TCGA-A3-3365 
"ZFYVE26 WILD-TYPE" "ZFYVE26 WILD-TYPE" "ZFYVE26 WILD-TYPE" "ZFYVE26 WILD-TYPE" 
       TCGA-A3-3374        TCGA-A3-3380        TCGA-A3-3383        TCGA-AK-3427 
"ZFYVE26 WILD-TYPE" "ZFYVE26 WILD-TYPE" "ZFYVE26 WILD-TYPE" "ZFYVE26 WILD-TYPE" 
       TCGA-AK-3440        TCGA-AK-3443        TCGA-AK-3453        TCGA-AK-3455 
"ZFYVE26 WILD-TYPE" "ZFYVE26 WILD-TYPE" "ZFYVE26 WILD-TYPE" "ZFYVE26 WILD-TYPE" 
       TCGA-AK-3456        TCGA-AK-3465        TCGA-AL-3466        TCGA-AL-3467 
"ZFYVE26 WILD-TYPE" "ZFYVE26 WILD-TYPE" "ZFYVE26 WILD-TYPE" "ZFYVE26 WILD-TYPE" 
       TCGA-AL-3472        TCGA-AL-3473        TCGA-AS-3777        TCGA-AS-3778 
"ZFYVE26 WILD-TYPE" "ZFYVE26 WILD-TYPE" "ZFYVE26 WILD-TYPE" "ZFYVE26 WILD-TYPE" 
       TCGA-B2-3923        TCGA-B2-4098        TCGA-B2-4099        TCGA-B3-3925 
"ZFYVE26 WILD-TYPE" "ZFYVE26 WILD-TYPE" "ZFYVE26 WILD-TYPE" "ZFYVE26 WILD-TYPE" 
       TCGA-B3-3926        TCGA-B3-4103        TCGA-B3-4104        TCGA-B8-4143 
"ZFYVE26 WILD-TYPE" "ZFYVE26 WILD-TYPE" "ZFYVE26 WILD-TYPE" "ZFYVE26 WILD-TYPE" 
       TCGA-B8-4148        TCGA-B8-4151        TCGA-B8-4154        TCGA-B8-4619 
"ZFYVE26 WILD-TYPE" "ZFYVE26 WILD-TYPE" "ZFYVE26 WILD-TYPE" "ZFYVE26 WILD-TYPE" 
       TCGA-B8-4620        TCGA-B9-4113        TCGA-B9-4114        TCGA-B9-4116 
"ZFYVE26 WILD-TYPE" "ZFYVE26 WILD-TYPE" "ZFYVE26 WILD-TYPE" "ZFYVE26 WILD-TYPE" 
       TCGA-B9-4117        TCGA-BP-4161        TCGA-BP-4162        TCGA-BP-4163 
"ZFYVE26 WILD-TYPE" "ZFYVE26 WILD-TYPE" "ZFYVE26 WILD-TYPE" "ZFYVE26 WILD-TYPE" 
       TCGA-BP-4164        TCGA-BP-4167        TCGA-CJ-4634        TCGA-CJ-4636 
"ZFYVE26 WILD-TYPE" "ZFYVE26 WILD-TYPE" "ZFYVE26 WILD-TYPE" "ZFYVE26 WILD-TYPE" 
       TCGA-CJ-4637        TCGA-CJ-4638        TCGA-CJ-4639        TCGA-CJ-4640 
"ZFYVE26 WILD-TYPE" "ZFYVE26 WILD-TYPE" "ZFYVE26 WILD-TYPE" "ZFYVE26 WILD-TYPE" 
       TCGA-CJ-4641        TCGA-CJ-4643        TCGA-CJ-4644 
"ZFYVE26 WILD-TYPE" "ZFYVE26 WILD-TYPE" "ZFYVE26 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZFYVE26 MUTATED        2      4      3
  ZFYVE26 WILD-TYPE    178    238    240
D48V3, multiclass
        clus
vv       ZFYVE26 MUTATED ZFYVE26 WILD-TYPE
  CLUS_1               2               178
  CLUS_2               4               238
  CLUS_3               3               240
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZFYVE26 MUTATED        0      5      1
  ZFYVE26 WILD-TYPE    103    250    118
D48V4, multiclass
        clus
vv       ZFYVE26 MUTATED ZFYVE26 WILD-TYPE
  CLUS_1               0               103
  CLUS_2               5               250
  CLUS_3               1               118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFYVE26 MUTATED        0      3      4      2
  ZFYVE26 WILD-TYPE     98    171    241    147
D48V5, multiclass
        clus
vv       ZFYVE26 MUTATED ZFYVE26 WILD-TYPE
  CLUS_1               0                98
  CLUS_2               3               171
  CLUS_3               4               241
  CLUS_4               2               147
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZFYVE26 MUTATED        0      0      4      3      0      2
  ZFYVE26 WILD-TYPE     80     90    173    135     90     89
D48V6, multiclass
        clus
vv       ZFYVE26 MUTATED ZFYVE26 WILD-TYPE
  CLUS_1               0                80
  CLUS_2               0                90
  CLUS_3               4               173
  CLUS_4               3               135
  CLUS_5               0                90
  CLUS_6               2                89
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZFYVE26 MUTATED        2      2      5
  ZFYVE26 WILD-TYPE    212    146    291
D48V7, multiclass
        clus
vv       ZFYVE26 MUTATED ZFYVE26 WILD-TYPE
  CLUS_1               2               212
  CLUS_2               2               146
  CLUS_3               5               291
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZFYVE26 MUTATED        0      7      2
  ZFYVE26 WILD-TYPE     72    469    108
D48V8, multiclass
        clus
vv       ZFYVE26 MUTATED ZFYVE26 WILD-TYPE
  CLUS_1               0                72
  CLUS_2               7               469
  CLUS_3               2               108
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFYVE26 MUTATED        2      0      0      1
  ZFYVE26 WILD-TYPE     74     60     42     98
D48V9, multiclass
        clus
vv       ZFYVE26 MUTATED ZFYVE26 WILD-TYPE
  CLUS_1               2                74
  CLUS_2               0                60
  CLUS_3               0                42
  CLUS_4               1                98
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZFYVE26 MUTATED        0      2      0      1      0
  ZFYVE26 WILD-TYPE     26     41     62     99     46
D48V10, multiclass
        clus
vv       ZFYVE26 MUTATED ZFYVE26 WILD-TYPE
  CLUS_1               0                26
  CLUS_2               2                41
  CLUS_3               0                62
  CLUS_4               1                99
  CLUS_5               0                46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(49) Variable = FAM160B2 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM160B2 MUTATED        0      0      0      0
  FAM160B2 WILD-TYPE     21     17      9     14
D49V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM160B2 MUTATED        0      0      0      0      0
  FAM160B2 WILD-TYPE     11     17     14     10      9
D49V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  FAM160B2 MUTATED        1      2      1
  FAM160B2 WILD-TYPE    179    240    242
D49V3, multiclass
        clus
vv       FAM160B2 MUTATED FAM160B2 WILD-TYPE
  CLUS_1                1                179
  CLUS_2                2                240
  CLUS_3                1                242
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  FAM160B2 MUTATED        1      2      1
  FAM160B2 WILD-TYPE    102    253    118
D49V4, multiclass
        clus
vv       FAM160B2 MUTATED FAM160B2 WILD-TYPE
  CLUS_1                1                102
  CLUS_2                2                253
  CLUS_3                1                118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM160B2 MUTATED        1      1      1      1
  FAM160B2 WILD-TYPE     97    173    244    148
D49V5, multiclass
        clus
vv       FAM160B2 MUTATED FAM160B2 WILD-TYPE
  CLUS_1                1                 97
  CLUS_2                1                173
  CLUS_3                1                244
  CLUS_4                1                148
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FAM160B2 MUTATED        1      0      1      1      0      1
  FAM160B2 WILD-TYPE     79     90    176    137     90     90
D49V6, multiclass
        clus
vv       FAM160B2 MUTATED FAM160B2 WILD-TYPE
  CLUS_1                1                 79
  CLUS_2                0                 90
  CLUS_3                1                176
  CLUS_4                1                137
  CLUS_5                0                 90
  CLUS_6                1                 90
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  FAM160B2 MUTATED        1      2      1
  FAM160B2 WILD-TYPE    213    146    295
D49V7, multiclass
        clus
vv       FAM160B2 MUTATED FAM160B2 WILD-TYPE
  CLUS_1                1                213
  CLUS_2                2                146
  CLUS_3                1                295
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  FAM160B2 MUTATED        0      3      1
  FAM160B2 WILD-TYPE     72    473    109
D49V8, multiclass
        clus
vv       FAM160B2 MUTATED FAM160B2 WILD-TYPE
  CLUS_1                0                 72
  CLUS_2                3                473
  CLUS_3                1                109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM160B2 MUTATED        1      1      0      0
  FAM160B2 WILD-TYPE     75     59     42     99
D49V9, multiclass
[1] "Remove cluster labels:" "FAM160B2 MUTATED"      
clus
  FAM160B2 MUTATED FAM160B2 WILD-TYPE 
                 2                275 
        TCGA-A3-3317         TCGA-A3-3358         TCGA-A3-3387 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-A4-7286         TCGA-A4-7287         TCGA-A4-7288 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-A4-7585         TCGA-A4-7734         TCGA-A4-7828 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-A4-7915         TCGA-A4-7996         TCGA-A4-8098 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-A4-8310         TCGA-A4-8312         TCGA-A4-8515 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-A4-8517         TCGA-A4-8518         TCGA-A4-8630 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-A4-A57E         TCGA-A4-A5XZ         TCGA-A4-A5Y0 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-A4-A5Y1         TCGA-AK-3440         TCGA-AK-3458 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-AK-3465         TCGA-AL-3466         TCGA-AL-3472 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-AL-3473         TCGA-AL-7173         TCGA-AT-A5NU 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-B0-4700         TCGA-B0-4706         TCGA-B0-4710 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-B0-4712         TCGA-B0-4810         TCGA-B0-4811 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-B0-4836         TCGA-B0-4837         TCGA-B0-4852 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-B0-5080         TCGA-B0-5085         TCGA-B0-5088 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-B0-5399         TCGA-B0-5691         TCGA-B0-5692 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-B0-5693         TCGA-B0-5694         TCGA-B0-5695 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-B0-5696         TCGA-B0-5699         TCGA-B0-5702 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-B0-5705         TCGA-B0-5709         TCGA-B1-5398 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-B1-A47N         TCGA-B1-A654         TCGA-B1-A656 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-B1-A657         TCGA-B2-3923         TCGA-B2-3924 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-B2-5633         TCGA-B2-5635         TCGA-B3-3925 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-B3-4104         TCGA-B3-8121         TCGA-B4-5377 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-B4-5836         TCGA-B8-4621         TCGA-B8-5545 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-B8-5550         TCGA-B8-5551         TCGA-B8-5552 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-B8-5553         TCGA-B9-4115         TCGA-B9-4117 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-B9-5156         TCGA-B9-A44B         TCGA-B9-A5W9 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-B9-A69E         TCGA-BP-4173         TCGA-BP-4340 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-BP-4761         TCGA-BP-4770         TCGA-BP-4787 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-BP-4789         TCGA-BP-4790         TCGA-BP-4804 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-BP-4807         TCGA-BP-4961         TCGA-BP-4967 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-BP-4968         TCGA-BP-4970         TCGA-BP-4974 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-BP-4976         TCGA-BP-4981         TCGA-BP-4982 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-BP-4985         TCGA-BP-4988         TCGA-BP-4989 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-BP-4992         TCGA-BP-4995         TCGA-BP-4998 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-BP-5001         TCGA-BP-5008         TCGA-BP-5009 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-BQ-5876         TCGA-BQ-5877         TCGA-BQ-5878 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-BQ-5879         TCGA-BQ-5880         TCGA-BQ-5881 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-BQ-5882         TCGA-BQ-5883         TCGA-BQ-5884 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-BQ-5886         TCGA-BQ-5887         TCGA-BQ-5888 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-BQ-5889         TCGA-BQ-5890         TCGA-BQ-5891 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-BQ-5892         TCGA-BQ-5893         TCGA-BQ-5894 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-BQ-7044         TCGA-BQ-7045         TCGA-BQ-7046 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-BQ-7048         TCGA-BQ-7050         TCGA-BQ-7051 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-BQ-7053         TCGA-BQ-7055         TCGA-BQ-7058 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-BQ-7059         TCGA-BQ-7060         TCGA-BQ-7061 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-BQ-7062         TCGA-CJ-4870         TCGA-CJ-4875 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-CJ-4876         TCGA-CJ-4878         TCGA-CJ-4881 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-CJ-4887         TCGA-CJ-4889         TCGA-CJ-4890 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-CJ-4895         TCGA-CJ-4900         TCGA-CJ-5671 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-CJ-5675         TCGA-CJ-5676         TCGA-CJ-5681 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-CJ-5683         TCGA-CJ-5686         TCGA-CJ-6031 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-CJ-6032         TCGA-CW-5585         TCGA-CW-5589 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-CW-6087         TCGA-CZ-4854         TCGA-CZ-4857 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-CZ-4858         TCGA-CZ-5453         TCGA-CZ-5454 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-CZ-5455         TCGA-CZ-5457         TCGA-CZ-5459 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-CZ-5462         TCGA-CZ-5463         TCGA-CZ-5466 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-CZ-5467         TCGA-CZ-5469         TCGA-CZ-5470 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-CZ-5989         TCGA-DV-5565         TCGA-DV-5566 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-DV-5569         TCGA-DW-5560         TCGA-DW-5561 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-DW-7834         TCGA-DW-7837         TCGA-DW-7838 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-DW-7839         TCGA-DW-7840         TCGA-DW-7842 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-DZ-6131         TCGA-DZ-6132         TCGA-DZ-6133 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-DZ-6134         TCGA-DZ-6135         TCGA-EU-5904 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-EV-5901         TCGA-EV-5902         TCGA-EV-5903 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-F9-A4JJ         TCGA-G7-6789         TCGA-G7-6790 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-G7-6792         TCGA-G7-6793         TCGA-G7-6795 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-G7-6796         TCGA-G7-7501         TCGA-G7-7502 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-G7-A4TM         TCGA-GL-6846         TCGA-GL-7773 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-GL-7966         TCGA-GL-8500         TCGA-GL-A4EM 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-GL-A59T         TCGA-HE-7128         TCGA-HE-7130 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-HE-A5NJ         TCGA-IA-A40U         TCGA-IA-A40X 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-IA-A40Y         TCGA-IZ-8195         TCGA-IZ-8196 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-IZ-A6M9         TCGA-J7-6720         TCGA-J7-8537 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-KL-8323         TCGA-KL-8324         TCGA-KL-8327 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-KL-8328         TCGA-KL-8331         TCGA-KL-8332 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-KL-8333         TCGA-KL-8334         TCGA-KL-8335 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-KL-8336         TCGA-KL-8338         TCGA-KL-8339 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-KL-8340         TCGA-KL-8341         TCGA-KL-8342 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-KL-8343         TCGA-KL-8344         TCGA-KL-8345 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-KM-8438         TCGA-KM-8439         TCGA-KM-8442 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-KM-8639         TCGA-KN-8418         TCGA-KN-8419 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-KN-8422         TCGA-KN-8423         TCGA-KN-8424 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-KN-8426         TCGA-KN-8427         TCGA-KN-8428 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-KN-8429         TCGA-KN-8430         TCGA-KN-8431 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-KN-8432         TCGA-KN-8433         TCGA-KN-8434 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-KN-8436         TCGA-KN-8437         TCGA-KO-8404 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-KO-8405         TCGA-KO-8408         TCGA-KO-8409 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-KO-8410         TCGA-KO-8413         TCGA-KO-8415 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-KO-8416         TCGA-KO-8417         TCGA-KV-A6GD 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-KV-A6GE         TCGA-P4-A5E6         TCGA-P4-A5E7 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-P4-A5E8         TCGA-P4-A5EA         TCGA-PJ-A5Z8 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-PJ-A5Z9         TCGA-Q2-A5QZ 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM160B2 MUTATED        0      1      1      0      0
  FAM160B2 WILD-TYPE     26     42     61    100     46
D49V10, multiclass
[1] "Remove cluster labels:" "FAM160B2 MUTATED"      
clus
  FAM160B2 MUTATED FAM160B2 WILD-TYPE 
                 2                275 
        TCGA-A3-3317         TCGA-A3-3358         TCGA-A3-3387 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-A4-7286         TCGA-A4-7287         TCGA-A4-7288 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-A4-7585         TCGA-A4-7734         TCGA-A4-7828 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-A4-7915         TCGA-A4-7996         TCGA-A4-8098 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-A4-8310         TCGA-A4-8312         TCGA-A4-8515 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-A4-8517         TCGA-A4-8518         TCGA-A4-8630 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-A4-A57E         TCGA-A4-A5XZ         TCGA-A4-A5Y0 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-A4-A5Y1         TCGA-AK-3440         TCGA-AK-3458 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-AK-3465         TCGA-AL-3466         TCGA-AL-3472 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-AL-3473         TCGA-AL-7173         TCGA-AT-A5NU 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-B0-4700         TCGA-B0-4706         TCGA-B0-4710 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-B0-4712         TCGA-B0-4810         TCGA-B0-4811 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-B0-4836         TCGA-B0-4837         TCGA-B0-4852 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-B0-5080         TCGA-B0-5085         TCGA-B0-5088 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-B0-5399         TCGA-B0-5691         TCGA-B0-5692 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-B0-5693         TCGA-B0-5694         TCGA-B0-5695 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-B0-5696         TCGA-B0-5699         TCGA-B0-5702 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-B0-5705         TCGA-B0-5709         TCGA-B1-5398 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-B1-A47N         TCGA-B1-A654         TCGA-B1-A656 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-B1-A657         TCGA-B2-3923         TCGA-B2-3924 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-B2-5633         TCGA-B2-5635         TCGA-B3-3925 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-B3-4104         TCGA-B3-8121         TCGA-B4-5377 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-B4-5836         TCGA-B8-4621         TCGA-B8-5545 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-B8-5550         TCGA-B8-5551         TCGA-B8-5552 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-B8-5553         TCGA-B9-4115         TCGA-B9-4117 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-B9-5156         TCGA-B9-A44B         TCGA-B9-A5W9 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-B9-A69E         TCGA-BP-4173         TCGA-BP-4340 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-BP-4761         TCGA-BP-4770         TCGA-BP-4787 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-BP-4789         TCGA-BP-4790         TCGA-BP-4804 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-BP-4807         TCGA-BP-4961         TCGA-BP-4967 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-BP-4968         TCGA-BP-4970         TCGA-BP-4974 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-BP-4976         TCGA-BP-4981         TCGA-BP-4982 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-BP-4985         TCGA-BP-4988         TCGA-BP-4989 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-BP-4992         TCGA-BP-4995         TCGA-BP-4998 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-BP-5001         TCGA-BP-5008         TCGA-BP-5009 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-BQ-5876         TCGA-BQ-5877         TCGA-BQ-5878 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-BQ-5879         TCGA-BQ-5880         TCGA-BQ-5881 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-BQ-5882         TCGA-BQ-5883         TCGA-BQ-5884 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-BQ-5886         TCGA-BQ-5887         TCGA-BQ-5888 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-BQ-5889         TCGA-BQ-5890         TCGA-BQ-5891 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-BQ-5892         TCGA-BQ-5893         TCGA-BQ-5894 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-BQ-7044         TCGA-BQ-7045         TCGA-BQ-7046 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-BQ-7048         TCGA-BQ-7050         TCGA-BQ-7051 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-BQ-7053         TCGA-BQ-7055         TCGA-BQ-7058 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-BQ-7059         TCGA-BQ-7060         TCGA-BQ-7061 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-BQ-7062         TCGA-CJ-4870         TCGA-CJ-4875 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-CJ-4876         TCGA-CJ-4878         TCGA-CJ-4881 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-CJ-4887         TCGA-CJ-4889         TCGA-CJ-4890 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-CJ-4895         TCGA-CJ-4900         TCGA-CJ-5671 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-CJ-5675         TCGA-CJ-5676         TCGA-CJ-5681 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-CJ-5683         TCGA-CJ-5686         TCGA-CJ-6031 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-CJ-6032         TCGA-CW-5585         TCGA-CW-5589 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-CW-6087         TCGA-CZ-4854         TCGA-CZ-4857 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-CZ-4858         TCGA-CZ-5453         TCGA-CZ-5454 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-CZ-5455         TCGA-CZ-5457         TCGA-CZ-5459 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-CZ-5462         TCGA-CZ-5463         TCGA-CZ-5466 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-CZ-5467         TCGA-CZ-5469         TCGA-CZ-5470 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-CZ-5989         TCGA-DV-5565         TCGA-DV-5566 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-DV-5569         TCGA-DW-5560         TCGA-DW-5561 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-DW-7834         TCGA-DW-7837         TCGA-DW-7838 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-DW-7839         TCGA-DW-7840         TCGA-DW-7842 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-DZ-6131         TCGA-DZ-6132         TCGA-DZ-6133 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-DZ-6134         TCGA-DZ-6135         TCGA-EU-5904 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-EV-5901         TCGA-EV-5902         TCGA-EV-5903 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-F9-A4JJ         TCGA-G7-6789         TCGA-G7-6790 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-G7-6792         TCGA-G7-6793         TCGA-G7-6795 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-G7-6796         TCGA-G7-7501         TCGA-G7-7502 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-G7-A4TM         TCGA-GL-6846         TCGA-GL-7773 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-GL-7966         TCGA-GL-8500         TCGA-GL-A4EM 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-GL-A59T         TCGA-HE-7128         TCGA-HE-7130 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-HE-A5NJ         TCGA-IA-A40U         TCGA-IA-A40X 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-IA-A40Y         TCGA-IZ-8195         TCGA-IZ-8196 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-IZ-A6M9         TCGA-J7-6720         TCGA-J7-8537 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-KL-8323         TCGA-KL-8324         TCGA-KL-8327 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-KL-8328         TCGA-KL-8331         TCGA-KL-8332 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-KL-8333         TCGA-KL-8334         TCGA-KL-8335 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-KL-8336         TCGA-KL-8338         TCGA-KL-8339 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-KL-8340         TCGA-KL-8341         TCGA-KL-8342 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-KL-8343         TCGA-KL-8344         TCGA-KL-8345 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-KM-8438         TCGA-KM-8439         TCGA-KM-8442 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-KM-8639         TCGA-KN-8418         TCGA-KN-8419 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-KN-8422         TCGA-KN-8423         TCGA-KN-8424 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-KN-8426         TCGA-KN-8427         TCGA-KN-8428 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-KN-8429         TCGA-KN-8430         TCGA-KN-8431 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-KN-8432         TCGA-KN-8433         TCGA-KN-8434 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-KN-8436         TCGA-KN-8437         TCGA-KO-8404 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-KO-8405         TCGA-KO-8408         TCGA-KO-8409 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-KO-8410         TCGA-KO-8413         TCGA-KO-8415 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-KO-8416         TCGA-KO-8417         TCGA-KV-A6GD 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-KV-A6GE         TCGA-P4-A5E6         TCGA-P4-A5E7 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-P4-A5E8         TCGA-P4-A5EA         TCGA-PJ-A5Z8 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 
        TCGA-PJ-A5Z9         TCGA-Q2-A5QZ 
"FAM160B2 WILD-TYPE" "FAM160B2 WILD-TYPE" 

Clustering(50) Variable = FAM47A MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM47A MUTATED        1      1      0      0
  FAM47A WILD-TYPE     20     16      9     14
D50V1, multiclass
[1] "Remove cluster labels:" "FAM47A MUTATED"        
clus
  FAM47A MUTATED FAM47A WILD-TYPE 
               2               59 
      TCGA-A3-3311       TCGA-A3-3316       TCGA-A3-3317       TCGA-A3-3322 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-A3-3323       TCGA-A3-3326       TCGA-A3-3331       TCGA-A3-3347 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-A3-3349       TCGA-A3-3362       TCGA-A3-3363       TCGA-A3-3365 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-A3-3374       TCGA-A3-3380       TCGA-A3-3383       TCGA-AK-3427 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-AK-3440       TCGA-AK-3443       TCGA-AK-3453       TCGA-AK-3455 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-AK-3456       TCGA-AK-3465       TCGA-AL-3466       TCGA-AL-3467 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-AL-3472       TCGA-AL-3473       TCGA-AS-3777       TCGA-AS-3778 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-B2-3923       TCGA-B2-3924       TCGA-B2-4098       TCGA-B2-4099 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-B3-3925       TCGA-B3-3926       TCGA-B3-4103       TCGA-B3-4104 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-B8-4143       TCGA-B8-4148       TCGA-B8-4151       TCGA-B8-4154 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-B8-4619       TCGA-B8-4620       TCGA-B9-4113       TCGA-B9-4114 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-B9-4115       TCGA-B9-4116       TCGA-B9-4117       TCGA-BP-4161 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-BP-4162       TCGA-BP-4163       TCGA-BP-4167       TCGA-CJ-4634 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-CJ-4636       TCGA-CJ-4637       TCGA-CJ-4639       TCGA-CJ-4640 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-CJ-4641       TCGA-CJ-4643       TCGA-CJ-4644 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM47A MUTATED        0      1      0      1      0
  FAM47A WILD-TYPE     11     16     14      9      9
D50V2, multiclass
[1] "Remove cluster labels:" "FAM47A MUTATED"        
clus
  FAM47A MUTATED FAM47A WILD-TYPE 
               2               59 
      TCGA-A3-3311       TCGA-A3-3316       TCGA-A3-3317       TCGA-A3-3322 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-A3-3323       TCGA-A3-3326       TCGA-A3-3331       TCGA-A3-3347 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-A3-3349       TCGA-A3-3362       TCGA-A3-3363       TCGA-A3-3365 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-A3-3374       TCGA-A3-3380       TCGA-A3-3383       TCGA-AK-3427 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-AK-3440       TCGA-AK-3443       TCGA-AK-3453       TCGA-AK-3455 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-AK-3456       TCGA-AK-3465       TCGA-AL-3466       TCGA-AL-3467 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-AL-3472       TCGA-AL-3473       TCGA-AS-3777       TCGA-AS-3778 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-B2-3923       TCGA-B2-3924       TCGA-B2-4098       TCGA-B2-4099 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-B3-3925       TCGA-B3-3926       TCGA-B3-4103       TCGA-B3-4104 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-B8-4143       TCGA-B8-4148       TCGA-B8-4151       TCGA-B8-4154 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-B8-4619       TCGA-B8-4620       TCGA-B9-4113       TCGA-B9-4114 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-B9-4115       TCGA-B9-4116       TCGA-B9-4117       TCGA-BP-4161 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-BP-4162       TCGA-BP-4163       TCGA-BP-4167       TCGA-CJ-4634 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-CJ-4636       TCGA-CJ-4637       TCGA-CJ-4639       TCGA-CJ-4640 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-CJ-4641       TCGA-CJ-4643       TCGA-CJ-4644 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM47A MUTATED        1      2      3
  FAM47A WILD-TYPE    179    240    240
D50V3, multiclass
        clus
vv       FAM47A MUTATED FAM47A WILD-TYPE
  CLUS_1              1              179
  CLUS_2              2              240
  CLUS_3              3              240
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM47A MUTATED        1      2      1
  FAM47A WILD-TYPE    102    253    118
D50V4, multiclass
        clus
vv       FAM47A MUTATED FAM47A WILD-TYPE
  CLUS_1              1              102
  CLUS_2              2              253
  CLUS_3              1              118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM47A MUTATED        1      1      2      2
  FAM47A WILD-TYPE     97    173    243    147
D50V5, multiclass
        clus
vv       FAM47A MUTATED FAM47A WILD-TYPE
  CLUS_1              1               97
  CLUS_2              1              173
  CLUS_3              2              243
  CLUS_4              2              147
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FAM47A MUTATED        1      1      1      1      2      0
  FAM47A WILD-TYPE     79     89    176    137     88     91
D50V6, multiclass
        clus
vv       FAM47A MUTATED FAM47A WILD-TYPE
  CLUS_1              1               79
  CLUS_2              1               89
  CLUS_3              1              176
  CLUS_4              1              137
  CLUS_5              2               88
  CLUS_6              0               91
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM47A MUTATED        2      0      4
  FAM47A WILD-TYPE    212    148    292
D50V7, multiclass
        clus
vv       FAM47A MUTATED FAM47A WILD-TYPE
  CLUS_1              2              212
  CLUS_2              0              148
  CLUS_3              4              292
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM47A MUTATED        1      4      1
  FAM47A WILD-TYPE     71    472    109
D50V8, multiclass
        clus
vv       FAM47A MUTATED FAM47A WILD-TYPE
  CLUS_1              1               71
  CLUS_2              4              472
  CLUS_3              1              109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM47A MUTATED        0      1      0      0
  FAM47A WILD-TYPE     76     59     42     99
D50V9, multiclass
[1] "Remove cluster labels:" "FAM47A MUTATED"        
clus
  FAM47A MUTATED FAM47A WILD-TYPE 
               1              276 
      TCGA-A3-3317       TCGA-A3-3358       TCGA-A3-3387       TCGA-A4-7286 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-A4-7287       TCGA-A4-7288       TCGA-A4-7585       TCGA-A4-7734 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-A4-7828       TCGA-A4-7915       TCGA-A4-7996       TCGA-A4-7997 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-A4-8098       TCGA-A4-8310       TCGA-A4-8312       TCGA-A4-8515 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-A4-8517       TCGA-A4-8518       TCGA-A4-8630       TCGA-A4-A57E 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-A4-A5XZ       TCGA-A4-A5Y0       TCGA-A4-A5Y1       TCGA-AK-3440 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-AK-3458       TCGA-AK-3465       TCGA-AL-3466       TCGA-AL-3472 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-AL-3473       TCGA-AL-7173       TCGA-AT-A5NU       TCGA-B0-4700 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-B0-4706       TCGA-B0-4710       TCGA-B0-4712       TCGA-B0-4810 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-B0-4811       TCGA-B0-4836       TCGA-B0-4837       TCGA-B0-4852 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-B0-5080       TCGA-B0-5085       TCGA-B0-5088       TCGA-B0-5399 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-B0-5691       TCGA-B0-5692       TCGA-B0-5693       TCGA-B0-5694 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-B0-5695       TCGA-B0-5696       TCGA-B0-5699       TCGA-B0-5702 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-B0-5705       TCGA-B0-5709       TCGA-B1-5398       TCGA-B1-A47N 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-B1-A654       TCGA-B1-A656       TCGA-B1-A657       TCGA-B2-3923 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-B2-3924       TCGA-B2-5633       TCGA-B2-5635       TCGA-B3-3925 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-B3-4104       TCGA-B3-8121       TCGA-B4-5377       TCGA-B4-5836 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-B8-4621       TCGA-B8-5545       TCGA-B8-5550       TCGA-B8-5551 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-B8-5552       TCGA-B8-5553       TCGA-B9-4115       TCGA-B9-4117 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-B9-5156       TCGA-B9-A44B       TCGA-B9-A5W9       TCGA-B9-A69E 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-BP-4173       TCGA-BP-4340       TCGA-BP-4761       TCGA-BP-4770 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-BP-4787       TCGA-BP-4789       TCGA-BP-4790       TCGA-BP-4804 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-BP-4807       TCGA-BP-4961       TCGA-BP-4967       TCGA-BP-4968 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-BP-4970       TCGA-BP-4974       TCGA-BP-4976       TCGA-BP-4981 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-BP-4982       TCGA-BP-4985       TCGA-BP-4988       TCGA-BP-4989 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-BP-4992       TCGA-BP-4995       TCGA-BP-4998       TCGA-BP-5001 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-BP-5008       TCGA-BP-5009       TCGA-BQ-5876       TCGA-BQ-5877 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-BQ-5878       TCGA-BQ-5879       TCGA-BQ-5880       TCGA-BQ-5881 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-BQ-5882       TCGA-BQ-5883       TCGA-BQ-5884       TCGA-BQ-5886 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-BQ-5887       TCGA-BQ-5888       TCGA-BQ-5889       TCGA-BQ-5890 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-BQ-5891       TCGA-BQ-5892       TCGA-BQ-5893       TCGA-BQ-5894 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-BQ-7044       TCGA-BQ-7045       TCGA-BQ-7046       TCGA-BQ-7048 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-BQ-7050       TCGA-BQ-7051       TCGA-BQ-7053       TCGA-BQ-7055 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-BQ-7058       TCGA-BQ-7059       TCGA-BQ-7060       TCGA-BQ-7061 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-BQ-7062       TCGA-CJ-4870       TCGA-CJ-4875       TCGA-CJ-4876 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-CJ-4878       TCGA-CJ-4881       TCGA-CJ-4887       TCGA-CJ-4889 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-CJ-4890       TCGA-CJ-4895       TCGA-CJ-4900       TCGA-CJ-5671 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-CJ-5675       TCGA-CJ-5676       TCGA-CJ-5681       TCGA-CJ-5683 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-CJ-5686       TCGA-CJ-6031       TCGA-CJ-6032       TCGA-CW-5585 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-CW-5589       TCGA-CW-6087       TCGA-CZ-4854       TCGA-CZ-4857 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-CZ-4858       TCGA-CZ-5453       TCGA-CZ-5454       TCGA-CZ-5455 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-CZ-5457       TCGA-CZ-5459       TCGA-CZ-5462       TCGA-CZ-5463 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-CZ-5466       TCGA-CZ-5467       TCGA-CZ-5469       TCGA-CZ-5470 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-CZ-5989       TCGA-DV-5565       TCGA-DV-5566       TCGA-DV-5569 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-DW-5560       TCGA-DW-5561       TCGA-DW-7834       TCGA-DW-7837 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-DW-7838       TCGA-DW-7839       TCGA-DW-7840       TCGA-DW-7842 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-DZ-6131       TCGA-DZ-6132       TCGA-DZ-6133       TCGA-DZ-6134 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-DZ-6135       TCGA-EU-5904       TCGA-EV-5901       TCGA-EV-5902 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-EV-5903       TCGA-F9-A4JJ       TCGA-G7-6789       TCGA-G7-6790 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-G7-6792       TCGA-G7-6793       TCGA-G7-6795       TCGA-G7-6796 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-G7-7501       TCGA-G7-7502       TCGA-G7-A4TM       TCGA-GL-6846 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-GL-7773       TCGA-GL-7966       TCGA-GL-8500       TCGA-GL-A4EM 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-GL-A59T       TCGA-HE-7128       TCGA-HE-7130       TCGA-HE-A5NJ 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-IA-A40U       TCGA-IA-A40X       TCGA-IA-A40Y       TCGA-IZ-8195 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-IZ-8196       TCGA-IZ-A6M9       TCGA-J7-6720       TCGA-J7-8537 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-KL-8323       TCGA-KL-8324       TCGA-KL-8327       TCGA-KL-8328 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-KL-8331       TCGA-KL-8332       TCGA-KL-8333       TCGA-KL-8334 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-KL-8335       TCGA-KL-8336       TCGA-KL-8338       TCGA-KL-8339 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-KL-8340       TCGA-KL-8341       TCGA-KL-8342       TCGA-KL-8343 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-KL-8344       TCGA-KL-8345       TCGA-KM-8438       TCGA-KM-8439 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-KM-8441       TCGA-KM-8442       TCGA-KM-8639       TCGA-KN-8418 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-KN-8419       TCGA-KN-8422       TCGA-KN-8423       TCGA-KN-8424 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-KN-8426       TCGA-KN-8427       TCGA-KN-8428       TCGA-KN-8429 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-KN-8430       TCGA-KN-8431       TCGA-KN-8433       TCGA-KN-8434 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-KN-8436       TCGA-KN-8437       TCGA-KO-8404       TCGA-KO-8405 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-KO-8408       TCGA-KO-8409       TCGA-KO-8410       TCGA-KO-8413 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-KO-8415       TCGA-KO-8416       TCGA-KO-8417       TCGA-KV-A6GD 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-KV-A6GE       TCGA-P4-A5E6       TCGA-P4-A5E7       TCGA-P4-A5E8 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-P4-A5EA       TCGA-PJ-A5Z8       TCGA-PJ-A5Z9       TCGA-Q2-A5QZ 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM47A MUTATED        0      0      0      0      1
  FAM47A WILD-TYPE     26     43     62    100     45
D50V10, multiclass
[1] "Remove cluster labels:" "FAM47A MUTATED"        
clus
  FAM47A MUTATED FAM47A WILD-TYPE 
               1              276 
      TCGA-A3-3317       TCGA-A3-3358       TCGA-A3-3387       TCGA-A4-7286 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-A4-7287       TCGA-A4-7288       TCGA-A4-7585       TCGA-A4-7734 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-A4-7828       TCGA-A4-7915       TCGA-A4-7996       TCGA-A4-7997 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-A4-8098       TCGA-A4-8310       TCGA-A4-8312       TCGA-A4-8515 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-A4-8517       TCGA-A4-8518       TCGA-A4-8630       TCGA-A4-A57E 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-A4-A5XZ       TCGA-A4-A5Y0       TCGA-A4-A5Y1       TCGA-AK-3440 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-AK-3458       TCGA-AK-3465       TCGA-AL-3466       TCGA-AL-3472 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-AL-3473       TCGA-AL-7173       TCGA-AT-A5NU       TCGA-B0-4700 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-B0-4706       TCGA-B0-4710       TCGA-B0-4712       TCGA-B0-4810 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-B0-4811       TCGA-B0-4836       TCGA-B0-4837       TCGA-B0-4852 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-B0-5080       TCGA-B0-5085       TCGA-B0-5088       TCGA-B0-5399 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-B0-5691       TCGA-B0-5692       TCGA-B0-5693       TCGA-B0-5694 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-B0-5695       TCGA-B0-5696       TCGA-B0-5699       TCGA-B0-5702 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-B0-5705       TCGA-B0-5709       TCGA-B1-5398       TCGA-B1-A47N 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-B1-A654       TCGA-B1-A656       TCGA-B1-A657       TCGA-B2-3923 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-B2-3924       TCGA-B2-5633       TCGA-B2-5635       TCGA-B3-3925 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-B3-4104       TCGA-B3-8121       TCGA-B4-5377       TCGA-B4-5836 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-B8-4621       TCGA-B8-5545       TCGA-B8-5550       TCGA-B8-5551 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-B8-5552       TCGA-B8-5553       TCGA-B9-4115       TCGA-B9-4117 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-B9-5156       TCGA-B9-A44B       TCGA-B9-A5W9       TCGA-B9-A69E 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-BP-4173       TCGA-BP-4340       TCGA-BP-4761       TCGA-BP-4770 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-BP-4787       TCGA-BP-4789       TCGA-BP-4790       TCGA-BP-4804 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-BP-4807       TCGA-BP-4961       TCGA-BP-4967       TCGA-BP-4968 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-BP-4970       TCGA-BP-4974       TCGA-BP-4976       TCGA-BP-4981 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-BP-4982       TCGA-BP-4985       TCGA-BP-4988       TCGA-BP-4989 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-BP-4992       TCGA-BP-4995       TCGA-BP-4998       TCGA-BP-5001 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-BP-5008       TCGA-BP-5009       TCGA-BQ-5876       TCGA-BQ-5877 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-BQ-5878       TCGA-BQ-5879       TCGA-BQ-5880       TCGA-BQ-5881 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-BQ-5882       TCGA-BQ-5883       TCGA-BQ-5884       TCGA-BQ-5886 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-BQ-5887       TCGA-BQ-5888       TCGA-BQ-5889       TCGA-BQ-5890 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-BQ-5891       TCGA-BQ-5892       TCGA-BQ-5893       TCGA-BQ-5894 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-BQ-7044       TCGA-BQ-7045       TCGA-BQ-7046       TCGA-BQ-7048 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-BQ-7050       TCGA-BQ-7051       TCGA-BQ-7053       TCGA-BQ-7055 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-BQ-7058       TCGA-BQ-7059       TCGA-BQ-7060       TCGA-BQ-7061 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-BQ-7062       TCGA-CJ-4870       TCGA-CJ-4875       TCGA-CJ-4876 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-CJ-4878       TCGA-CJ-4881       TCGA-CJ-4887       TCGA-CJ-4889 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-CJ-4890       TCGA-CJ-4895       TCGA-CJ-4900       TCGA-CJ-5671 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-CJ-5675       TCGA-CJ-5676       TCGA-CJ-5681       TCGA-CJ-5683 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-CJ-5686       TCGA-CJ-6031       TCGA-CJ-6032       TCGA-CW-5585 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-CW-5589       TCGA-CW-6087       TCGA-CZ-4854       TCGA-CZ-4857 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-CZ-4858       TCGA-CZ-5453       TCGA-CZ-5454       TCGA-CZ-5455 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-CZ-5457       TCGA-CZ-5459       TCGA-CZ-5462       TCGA-CZ-5463 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-CZ-5466       TCGA-CZ-5467       TCGA-CZ-5469       TCGA-CZ-5470 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-CZ-5989       TCGA-DV-5565       TCGA-DV-5566       TCGA-DV-5569 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-DW-5560       TCGA-DW-5561       TCGA-DW-7834       TCGA-DW-7837 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-DW-7838       TCGA-DW-7839       TCGA-DW-7840       TCGA-DW-7842 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-DZ-6131       TCGA-DZ-6132       TCGA-DZ-6133       TCGA-DZ-6134 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-DZ-6135       TCGA-EU-5904       TCGA-EV-5901       TCGA-EV-5902 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-EV-5903       TCGA-F9-A4JJ       TCGA-G7-6789       TCGA-G7-6790 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-G7-6792       TCGA-G7-6793       TCGA-G7-6795       TCGA-G7-6796 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-G7-7501       TCGA-G7-7502       TCGA-G7-A4TM       TCGA-GL-6846 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-GL-7773       TCGA-GL-7966       TCGA-GL-8500       TCGA-GL-A4EM 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-GL-A59T       TCGA-HE-7128       TCGA-HE-7130       TCGA-HE-A5NJ 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-IA-A40U       TCGA-IA-A40X       TCGA-IA-A40Y       TCGA-IZ-8195 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-IZ-8196       TCGA-IZ-A6M9       TCGA-J7-6720       TCGA-J7-8537 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-KL-8323       TCGA-KL-8324       TCGA-KL-8327       TCGA-KL-8328 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-KL-8331       TCGA-KL-8332       TCGA-KL-8333       TCGA-KL-8334 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-KL-8335       TCGA-KL-8336       TCGA-KL-8338       TCGA-KL-8339 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-KL-8340       TCGA-KL-8341       TCGA-KL-8342       TCGA-KL-8343 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-KL-8344       TCGA-KL-8345       TCGA-KM-8438       TCGA-KM-8439 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-KM-8441       TCGA-KM-8442       TCGA-KM-8639       TCGA-KN-8418 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-KN-8419       TCGA-KN-8422       TCGA-KN-8423       TCGA-KN-8424 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-KN-8426       TCGA-KN-8427       TCGA-KN-8428       TCGA-KN-8429 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-KN-8430       TCGA-KN-8431       TCGA-KN-8433       TCGA-KN-8434 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-KN-8436       TCGA-KN-8437       TCGA-KO-8404       TCGA-KO-8405 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-KO-8408       TCGA-KO-8409       TCGA-KO-8410       TCGA-KO-8413 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-KO-8415       TCGA-KO-8416       TCGA-KO-8417       TCGA-KV-A6GD 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-KV-A6GE       TCGA-P4-A5E6       TCGA-P4-A5E7       TCGA-P4-A5E8 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-P4-A5EA       TCGA-PJ-A5Z8       TCGA-PJ-A5Z9       TCGA-Q2-A5QZ 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 

Clustering(51) Variable = ATP1A1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP1A1 MUTATED        0      1      1      2
  ATP1A1 WILD-TYPE     21     16      8     12
D51V1, multiclass
        clus
vv       ATP1A1 MUTATED ATP1A1 WILD-TYPE
  CLUS_1              0               21
  CLUS_2              1               16
  CLUS_3              1                8
  CLUS_4              2               12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATP1A1 MUTATED        0      1      2      0      1
  ATP1A1 WILD-TYPE     11     16     12     10      8
D51V2, multiclass
        clus
vv       ATP1A1 MUTATED ATP1A1 WILD-TYPE
  CLUS_1              0               11
  CLUS_2              1               16
  CLUS_3              2               12
  CLUS_4              0               10
  CLUS_5              1                8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ATP1A1 MUTATED        5      4      1
  ATP1A1 WILD-TYPE    175    238    242
D51V3, multiclass
        clus
vv       ATP1A1 MUTATED ATP1A1 WILD-TYPE
  CLUS_1              5              175
  CLUS_2              4              238
  CLUS_3              1              242
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ATP1A1 MUTATED        0      2      1
  ATP1A1 WILD-TYPE    103    253    118
D51V4, multiclass
        clus
vv       ATP1A1 MUTATED ATP1A1 WILD-TYPE
  CLUS_1              0              103
  CLUS_2              2              253
  CLUS_3              1              118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP1A1 MUTATED        2      0      4      4
  ATP1A1 WILD-TYPE     96    174    241    145
D51V5, multiclass
        clus
vv       ATP1A1 MUTATED ATP1A1 WILD-TYPE
  CLUS_1              2               96
  CLUS_2              0              174
  CLUS_3              4              241
  CLUS_4              4              145
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ATP1A1 MUTATED        1      1      3      1      1      3
  ATP1A1 WILD-TYPE     79     89    174    137     89     88
D51V6, multiclass
        clus
vv       ATP1A1 MUTATED ATP1A1 WILD-TYPE
  CLUS_1              1               79
  CLUS_2              1               89
  CLUS_3              3              174
  CLUS_4              1              137
  CLUS_5              1               89
  CLUS_6              3               88
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ATP1A1 MUTATED        5      0      5
  ATP1A1 WILD-TYPE    209    148    291
D51V7, multiclass
        clus
vv       ATP1A1 MUTATED ATP1A1 WILD-TYPE
  CLUS_1              5              209
  CLUS_2              0              148
  CLUS_3              5              291
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ATP1A1 MUTATED        1      6      3
  ATP1A1 WILD-TYPE     71    470    107
D51V8, multiclass
        clus
vv       ATP1A1 MUTATED ATP1A1 WILD-TYPE
  CLUS_1              1               71
  CLUS_2              6              470
  CLUS_3              3              107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP1A1 MUTATED        0      0      1      1
  ATP1A1 WILD-TYPE     76     60     41     98
D51V9, multiclass
[1] "Remove cluster labels:" "ATP1A1 MUTATED"        
clus
  ATP1A1 MUTATED ATP1A1 WILD-TYPE 
               2              275 
      TCGA-A3-3317       TCGA-A3-3358       TCGA-A3-3387       TCGA-A4-7286 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-A4-7287       TCGA-A4-7288       TCGA-A4-7585       TCGA-A4-7734 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-A4-7828       TCGA-A4-7915       TCGA-A4-7996       TCGA-A4-7997 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-A4-8098       TCGA-A4-8310       TCGA-A4-8312       TCGA-A4-8515 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-A4-8517       TCGA-A4-8518       TCGA-A4-8630       TCGA-A4-A57E 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-A4-A5XZ       TCGA-A4-A5Y0       TCGA-A4-A5Y1       TCGA-AK-3440 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-AK-3458       TCGA-AK-3465       TCGA-AL-3466       TCGA-AL-3472 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-AL-3473       TCGA-AL-7173       TCGA-AT-A5NU       TCGA-B0-4700 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-B0-4706       TCGA-B0-4710       TCGA-B0-4712       TCGA-B0-4810 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-B0-4811       TCGA-B0-4836       TCGA-B0-4837       TCGA-B0-4852 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-B0-5080       TCGA-B0-5085       TCGA-B0-5088       TCGA-B0-5399 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-B0-5691       TCGA-B0-5692       TCGA-B0-5693       TCGA-B0-5694 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-B0-5695       TCGA-B0-5696       TCGA-B0-5699       TCGA-B0-5702 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-B0-5705       TCGA-B0-5709       TCGA-B1-5398       TCGA-B1-A47N 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-B1-A654       TCGA-B1-A656       TCGA-B1-A657       TCGA-B2-3923 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-B2-3924       TCGA-B2-5633       TCGA-B2-5635       TCGA-B3-3925 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-B3-8121       TCGA-B4-5377       TCGA-B4-5836       TCGA-B8-4621 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-B8-5545       TCGA-B8-5550       TCGA-B8-5551       TCGA-B8-5552 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-B8-5553       TCGA-B9-4115       TCGA-B9-4117       TCGA-B9-5156 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-B9-A44B       TCGA-B9-A5W9       TCGA-B9-A69E       TCGA-BP-4173 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-BP-4340       TCGA-BP-4761       TCGA-BP-4770       TCGA-BP-4787 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-BP-4789       TCGA-BP-4790       TCGA-BP-4804       TCGA-BP-4807 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-BP-4961       TCGA-BP-4967       TCGA-BP-4968       TCGA-BP-4970 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-BP-4974       TCGA-BP-4976       TCGA-BP-4981       TCGA-BP-4982 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-BP-4985       TCGA-BP-4988       TCGA-BP-4989       TCGA-BP-4992 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-BP-4995       TCGA-BP-4998       TCGA-BP-5001       TCGA-BP-5008 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-BP-5009       TCGA-BQ-5876       TCGA-BQ-5877       TCGA-BQ-5878 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-BQ-5879       TCGA-BQ-5880       TCGA-BQ-5881       TCGA-BQ-5882 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-BQ-5883       TCGA-BQ-5884       TCGA-BQ-5886       TCGA-BQ-5887 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-BQ-5888       TCGA-BQ-5889       TCGA-BQ-5890       TCGA-BQ-5891 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-BQ-5892       TCGA-BQ-5893       TCGA-BQ-5894       TCGA-BQ-7044 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-BQ-7045       TCGA-BQ-7046       TCGA-BQ-7048       TCGA-BQ-7050 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-BQ-7051       TCGA-BQ-7053       TCGA-BQ-7055       TCGA-BQ-7058 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-BQ-7059       TCGA-BQ-7060       TCGA-BQ-7061       TCGA-BQ-7062 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-CJ-4870       TCGA-CJ-4876       TCGA-CJ-4878       TCGA-CJ-4881 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-CJ-4887       TCGA-CJ-4889       TCGA-CJ-4890       TCGA-CJ-4895 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-CJ-4900       TCGA-CJ-5671       TCGA-CJ-5675       TCGA-CJ-5676 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-CJ-5681       TCGA-CJ-5683       TCGA-CJ-5686       TCGA-CJ-6031 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-CJ-6032       TCGA-CW-5585       TCGA-CW-5589       TCGA-CW-6087 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-CZ-4854       TCGA-CZ-4857       TCGA-CZ-4858       TCGA-CZ-5453 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-CZ-5454       TCGA-CZ-5455       TCGA-CZ-5457       TCGA-CZ-5459 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-CZ-5462       TCGA-CZ-5463       TCGA-CZ-5466       TCGA-CZ-5467 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-CZ-5469       TCGA-CZ-5470       TCGA-CZ-5989       TCGA-DV-5565 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-DV-5566       TCGA-DV-5569       TCGA-DW-5560       TCGA-DW-5561 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-DW-7834       TCGA-DW-7837       TCGA-DW-7838       TCGA-DW-7839 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-DW-7840       TCGA-DW-7842       TCGA-DZ-6131       TCGA-DZ-6132 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-DZ-6133       TCGA-DZ-6134       TCGA-DZ-6135       TCGA-EU-5904 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-EV-5901       TCGA-EV-5902       TCGA-EV-5903       TCGA-F9-A4JJ 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-G7-6789       TCGA-G7-6790       TCGA-G7-6792       TCGA-G7-6793 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-G7-6795       TCGA-G7-6796       TCGA-G7-7501       TCGA-G7-7502 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-G7-A4TM       TCGA-GL-6846       TCGA-GL-7773       TCGA-GL-7966 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-GL-8500       TCGA-GL-A4EM       TCGA-GL-A59T       TCGA-HE-7128 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-HE-7130       TCGA-HE-A5NJ       TCGA-IA-A40U       TCGA-IA-A40X 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-IA-A40Y       TCGA-IZ-8195       TCGA-IZ-8196       TCGA-IZ-A6M9 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-J7-6720       TCGA-J7-8537       TCGA-KL-8323       TCGA-KL-8324 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-KL-8327       TCGA-KL-8328       TCGA-KL-8331       TCGA-KL-8332 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-KL-8333       TCGA-KL-8334       TCGA-KL-8335       TCGA-KL-8336 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-KL-8338       TCGA-KL-8339       TCGA-KL-8340       TCGA-KL-8341 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-KL-8342       TCGA-KL-8343       TCGA-KL-8344       TCGA-KL-8345 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-KM-8438       TCGA-KM-8439       TCGA-KM-8441       TCGA-KM-8442 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-KM-8639       TCGA-KN-8418       TCGA-KN-8419       TCGA-KN-8422 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-KN-8423       TCGA-KN-8424       TCGA-KN-8426       TCGA-KN-8427 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-KN-8428       TCGA-KN-8429       TCGA-KN-8430       TCGA-KN-8431 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-KN-8432       TCGA-KN-8433       TCGA-KN-8434       TCGA-KN-8436 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-KN-8437       TCGA-KO-8404       TCGA-KO-8405       TCGA-KO-8408 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-KO-8409       TCGA-KO-8410       TCGA-KO-8413       TCGA-KO-8415 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-KO-8416       TCGA-KO-8417       TCGA-KV-A6GD       TCGA-KV-A6GE 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-P4-A5E6       TCGA-P4-A5E7       TCGA-P4-A5E8       TCGA-P4-A5EA 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-PJ-A5Z8       TCGA-PJ-A5Z9       TCGA-Q2-A5QZ 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATP1A1 MUTATED        0      0      1      1      0
  ATP1A1 WILD-TYPE     26     43     61     99     46
D51V10, multiclass
[1] "Remove cluster labels:" "ATP1A1 MUTATED"        
clus
  ATP1A1 MUTATED ATP1A1 WILD-TYPE 
               2              275 
      TCGA-A3-3317       TCGA-A3-3358       TCGA-A3-3387       TCGA-A4-7286 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-A4-7287       TCGA-A4-7288       TCGA-A4-7585       TCGA-A4-7734 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-A4-7828       TCGA-A4-7915       TCGA-A4-7996       TCGA-A4-7997 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-A4-8098       TCGA-A4-8310       TCGA-A4-8312       TCGA-A4-8515 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-A4-8517       TCGA-A4-8518       TCGA-A4-8630       TCGA-A4-A57E 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-A4-A5XZ       TCGA-A4-A5Y0       TCGA-A4-A5Y1       TCGA-AK-3440 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-AK-3458       TCGA-AK-3465       TCGA-AL-3466       TCGA-AL-3472 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-AL-3473       TCGA-AL-7173       TCGA-AT-A5NU       TCGA-B0-4700 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-B0-4706       TCGA-B0-4710       TCGA-B0-4712       TCGA-B0-4810 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-B0-4811       TCGA-B0-4836       TCGA-B0-4837       TCGA-B0-4852 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-B0-5080       TCGA-B0-5085       TCGA-B0-5088       TCGA-B0-5399 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-B0-5691       TCGA-B0-5692       TCGA-B0-5693       TCGA-B0-5694 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-B0-5695       TCGA-B0-5696       TCGA-B0-5699       TCGA-B0-5702 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-B0-5705       TCGA-B0-5709       TCGA-B1-5398       TCGA-B1-A47N 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-B1-A654       TCGA-B1-A656       TCGA-B1-A657       TCGA-B2-3923 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-B2-3924       TCGA-B2-5633       TCGA-B2-5635       TCGA-B3-3925 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-B3-8121       TCGA-B4-5377       TCGA-B4-5836       TCGA-B8-4621 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-B8-5545       TCGA-B8-5550       TCGA-B8-5551       TCGA-B8-5552 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-B8-5553       TCGA-B9-4115       TCGA-B9-4117       TCGA-B9-5156 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-B9-A44B       TCGA-B9-A5W9       TCGA-B9-A69E       TCGA-BP-4173 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-BP-4340       TCGA-BP-4761       TCGA-BP-4770       TCGA-BP-4787 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-BP-4789       TCGA-BP-4790       TCGA-BP-4804       TCGA-BP-4807 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-BP-4961       TCGA-BP-4967       TCGA-BP-4968       TCGA-BP-4970 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-BP-4974       TCGA-BP-4976       TCGA-BP-4981       TCGA-BP-4982 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-BP-4985       TCGA-BP-4988       TCGA-BP-4989       TCGA-BP-4992 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-BP-4995       TCGA-BP-4998       TCGA-BP-5001       TCGA-BP-5008 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-BP-5009       TCGA-BQ-5876       TCGA-BQ-5877       TCGA-BQ-5878 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-BQ-5879       TCGA-BQ-5880       TCGA-BQ-5881       TCGA-BQ-5882 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-BQ-5883       TCGA-BQ-5884       TCGA-BQ-5886       TCGA-BQ-5887 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-BQ-5888       TCGA-BQ-5889       TCGA-BQ-5890       TCGA-BQ-5891 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-BQ-5892       TCGA-BQ-5893       TCGA-BQ-5894       TCGA-BQ-7044 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-BQ-7045       TCGA-BQ-7046       TCGA-BQ-7048       TCGA-BQ-7050 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-BQ-7051       TCGA-BQ-7053       TCGA-BQ-7055       TCGA-BQ-7058 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-BQ-7059       TCGA-BQ-7060       TCGA-BQ-7061       TCGA-BQ-7062 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-CJ-4870       TCGA-CJ-4876       TCGA-CJ-4878       TCGA-CJ-4881 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-CJ-4887       TCGA-CJ-4889       TCGA-CJ-4890       TCGA-CJ-4895 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-CJ-4900       TCGA-CJ-5671       TCGA-CJ-5675       TCGA-CJ-5676 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-CJ-5681       TCGA-CJ-5683       TCGA-CJ-5686       TCGA-CJ-6031 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-CJ-6032       TCGA-CW-5585       TCGA-CW-5589       TCGA-CW-6087 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-CZ-4854       TCGA-CZ-4857       TCGA-CZ-4858       TCGA-CZ-5453 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-CZ-5454       TCGA-CZ-5455       TCGA-CZ-5457       TCGA-CZ-5459 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-CZ-5462       TCGA-CZ-5463       TCGA-CZ-5466       TCGA-CZ-5467 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-CZ-5469       TCGA-CZ-5470       TCGA-CZ-5989       TCGA-DV-5565 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-DV-5566       TCGA-DV-5569       TCGA-DW-5560       TCGA-DW-5561 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-DW-7834       TCGA-DW-7837       TCGA-DW-7838       TCGA-DW-7839 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-DW-7840       TCGA-DW-7842       TCGA-DZ-6131       TCGA-DZ-6132 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-DZ-6133       TCGA-DZ-6134       TCGA-DZ-6135       TCGA-EU-5904 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-EV-5901       TCGA-EV-5902       TCGA-EV-5903       TCGA-F9-A4JJ 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-G7-6789       TCGA-G7-6790       TCGA-G7-6792       TCGA-G7-6793 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-G7-6795       TCGA-G7-6796       TCGA-G7-7501       TCGA-G7-7502 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-G7-A4TM       TCGA-GL-6846       TCGA-GL-7773       TCGA-GL-7966 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-GL-8500       TCGA-GL-A4EM       TCGA-GL-A59T       TCGA-HE-7128 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-HE-7130       TCGA-HE-A5NJ       TCGA-IA-A40U       TCGA-IA-A40X 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-IA-A40Y       TCGA-IZ-8195       TCGA-IZ-8196       TCGA-IZ-A6M9 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-J7-6720       TCGA-J7-8537       TCGA-KL-8323       TCGA-KL-8324 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-KL-8327       TCGA-KL-8328       TCGA-KL-8331       TCGA-KL-8332 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-KL-8333       TCGA-KL-8334       TCGA-KL-8335       TCGA-KL-8336 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-KL-8338       TCGA-KL-8339       TCGA-KL-8340       TCGA-KL-8341 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-KL-8342       TCGA-KL-8343       TCGA-KL-8344       TCGA-KL-8345 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-KM-8438       TCGA-KM-8439       TCGA-KM-8441       TCGA-KM-8442 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-KM-8639       TCGA-KN-8418       TCGA-KN-8419       TCGA-KN-8422 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-KN-8423       TCGA-KN-8424       TCGA-KN-8426       TCGA-KN-8427 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-KN-8428       TCGA-KN-8429       TCGA-KN-8430       TCGA-KN-8431 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-KN-8432       TCGA-KN-8433       TCGA-KN-8434       TCGA-KN-8436 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-KN-8437       TCGA-KO-8404       TCGA-KO-8405       TCGA-KO-8408 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-KO-8409       TCGA-KO-8410       TCGA-KO-8413       TCGA-KO-8415 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-KO-8416       TCGA-KO-8417       TCGA-KV-A6GD       TCGA-KV-A6GE 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-P4-A5E6       TCGA-P4-A5E7       TCGA-P4-A5E8       TCGA-P4-A5EA 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 
      TCGA-PJ-A5Z8       TCGA-PJ-A5Z9       TCGA-Q2-A5QZ 
"ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" "ATP1A1 WILD-TYPE" 

Clustering(52) Variable = SH3BP2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SH3BP2 MUTATED        0      0      0      1
  SH3BP2 WILD-TYPE     21     17      9     13
D52V1, multiclass
[1] "Remove cluster labels:" "SH3BP2 MUTATED"        
clus
  SH3BP2 MUTATED SH3BP2 WILD-TYPE 
               1               60 
      TCGA-A3-3311       TCGA-A3-3316       TCGA-A3-3317       TCGA-A3-3322 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-A3-3323       TCGA-A3-3326       TCGA-A3-3331       TCGA-A3-3347 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-A3-3349       TCGA-A3-3362       TCGA-A3-3363       TCGA-A3-3365 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-A3-3374       TCGA-A3-3380       TCGA-A3-3383       TCGA-AK-3427 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-AK-3440       TCGA-AK-3443       TCGA-AK-3453       TCGA-AK-3455 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-AK-3456       TCGA-AK-3465       TCGA-AL-3466       TCGA-AL-3467 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-AL-3472       TCGA-AL-3473       TCGA-AS-3777       TCGA-AS-3778 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-B2-3923       TCGA-B2-3924       TCGA-B2-4098       TCGA-B2-4099 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-B3-3925       TCGA-B3-3926       TCGA-B3-4103       TCGA-B3-4104 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-B8-4143       TCGA-B8-4148       TCGA-B8-4151       TCGA-B8-4154 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-B8-4619       TCGA-B8-4620       TCGA-B9-4113       TCGA-B9-4115 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-B9-4116       TCGA-B9-4117       TCGA-BP-4161       TCGA-BP-4162 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-BP-4163       TCGA-BP-4164       TCGA-BP-4167       TCGA-CJ-4634 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-CJ-4636       TCGA-CJ-4637       TCGA-CJ-4638       TCGA-CJ-4639 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-CJ-4640       TCGA-CJ-4641       TCGA-CJ-4643       TCGA-CJ-4644 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SH3BP2 MUTATED        0      0      1      0      0
  SH3BP2 WILD-TYPE     11     17     13     10      9
D52V2, multiclass
[1] "Remove cluster labels:" "SH3BP2 MUTATED"        
clus
  SH3BP2 MUTATED SH3BP2 WILD-TYPE 
               1               60 
      TCGA-A3-3311       TCGA-A3-3316       TCGA-A3-3317       TCGA-A3-3322 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-A3-3323       TCGA-A3-3326       TCGA-A3-3331       TCGA-A3-3347 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-A3-3349       TCGA-A3-3362       TCGA-A3-3363       TCGA-A3-3365 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-A3-3374       TCGA-A3-3380       TCGA-A3-3383       TCGA-AK-3427 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-AK-3440       TCGA-AK-3443       TCGA-AK-3453       TCGA-AK-3455 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-AK-3456       TCGA-AK-3465       TCGA-AL-3466       TCGA-AL-3467 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-AL-3472       TCGA-AL-3473       TCGA-AS-3777       TCGA-AS-3778 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-B2-3923       TCGA-B2-3924       TCGA-B2-4098       TCGA-B2-4099 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-B3-3925       TCGA-B3-3926       TCGA-B3-4103       TCGA-B3-4104 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-B8-4143       TCGA-B8-4148       TCGA-B8-4151       TCGA-B8-4154 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-B8-4619       TCGA-B8-4620       TCGA-B9-4113       TCGA-B9-4115 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-B9-4116       TCGA-B9-4117       TCGA-BP-4161       TCGA-BP-4162 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-BP-4163       TCGA-BP-4164       TCGA-BP-4167       TCGA-CJ-4634 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-CJ-4636       TCGA-CJ-4637       TCGA-CJ-4638       TCGA-CJ-4639 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-CJ-4640       TCGA-CJ-4641       TCGA-CJ-4643       TCGA-CJ-4644 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SH3BP2 MUTATED        3      1      0
  SH3BP2 WILD-TYPE    177    241    243
D52V3, multiclass
        clus
vv       SH3BP2 MUTATED SH3BP2 WILD-TYPE
  CLUS_1              3              177
  CLUS_2              1              241
  CLUS_3              0              243
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SH3BP2 MUTATED        0      1      2
  SH3BP2 WILD-TYPE    103    254    117
D52V4, multiclass
        clus
vv       SH3BP2 MUTATED SH3BP2 WILD-TYPE
  CLUS_1              0              103
  CLUS_2              1              254
  CLUS_3              2              117
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SH3BP2 MUTATED        0      0      1      3
  SH3BP2 WILD-TYPE     98    174    244    146
D52V5, multiclass
        clus
vv       SH3BP2 MUTATED SH3BP2 WILD-TYPE
  CLUS_1              0               98
  CLUS_2              0              174
  CLUS_3              1              244
  CLUS_4              3              146
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SH3BP2 MUTATED        0      1      0      0      1      2
  SH3BP2 WILD-TYPE     80     89    177    138     89     89
D52V6, multiclass
        clus
vv       SH3BP2 MUTATED SH3BP2 WILD-TYPE
  CLUS_1              0               80
  CLUS_2              1               89
  CLUS_3              0              177
  CLUS_4              0              138
  CLUS_5              1               89
  CLUS_6              2               89
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SH3BP2 MUTATED        3      0      1
  SH3BP2 WILD-TYPE    211    148    295
D52V7, multiclass
        clus
vv       SH3BP2 MUTATED SH3BP2 WILD-TYPE
  CLUS_1              3              211
  CLUS_2              0              148
  CLUS_3              1              295
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SH3BP2 MUTATED        0      2      2
  SH3BP2 WILD-TYPE     72    474    108
D52V8, multiclass
        clus
vv       SH3BP2 MUTATED SH3BP2 WILD-TYPE
  CLUS_1              0               72
  CLUS_2              2              474
  CLUS_3              2              108
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SH3BP2 MUTATED        1      0      0      1
  SH3BP2 WILD-TYPE     75     60     42     98
D52V9, multiclass
[1] "Remove cluster labels:" "SH3BP2 MUTATED"        
clus
  SH3BP2 MUTATED SH3BP2 WILD-TYPE 
               2              275 
      TCGA-A3-3317       TCGA-A3-3358       TCGA-A3-3387       TCGA-A4-7286 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-A4-7287       TCGA-A4-7288       TCGA-A4-7585       TCGA-A4-7734 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-A4-7828       TCGA-A4-7915       TCGA-A4-7996       TCGA-A4-7997 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-A4-8098       TCGA-A4-8310       TCGA-A4-8312       TCGA-A4-8515 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-A4-8517       TCGA-A4-8518       TCGA-A4-8630       TCGA-A4-A57E 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-A4-A5XZ       TCGA-A4-A5Y0       TCGA-A4-A5Y1       TCGA-AK-3440 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-AK-3458       TCGA-AK-3465       TCGA-AL-3466       TCGA-AL-3472 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-AL-3473       TCGA-AL-7173       TCGA-AT-A5NU       TCGA-B0-4700 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-B0-4706       TCGA-B0-4710       TCGA-B0-4712       TCGA-B0-4810 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-B0-4811       TCGA-B0-4836       TCGA-B0-4837       TCGA-B0-4852 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-B0-5080       TCGA-B0-5085       TCGA-B0-5088       TCGA-B0-5399 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-B0-5691       TCGA-B0-5692       TCGA-B0-5693       TCGA-B0-5694 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-B0-5695       TCGA-B0-5696       TCGA-B0-5699       TCGA-B0-5702 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-B0-5705       TCGA-B0-5709       TCGA-B1-5398       TCGA-B1-A47N 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-B1-A654       TCGA-B1-A656       TCGA-B1-A657       TCGA-B2-3923 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-B2-3924       TCGA-B2-5633       TCGA-B2-5635       TCGA-B3-3925 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-B3-4104       TCGA-B3-8121       TCGA-B4-5377       TCGA-B8-4621 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-B8-5545       TCGA-B8-5550       TCGA-B8-5551       TCGA-B8-5552 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-B8-5553       TCGA-B9-4115       TCGA-B9-4117       TCGA-B9-5156 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-B9-A44B       TCGA-B9-A5W9       TCGA-B9-A69E       TCGA-BP-4173 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-BP-4340       TCGA-BP-4761       TCGA-BP-4770       TCGA-BP-4787 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-BP-4789       TCGA-BP-4790       TCGA-BP-4804       TCGA-BP-4807 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-BP-4961       TCGA-BP-4967       TCGA-BP-4968       TCGA-BP-4970 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-BP-4974       TCGA-BP-4976       TCGA-BP-4981       TCGA-BP-4982 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-BP-4985       TCGA-BP-4988       TCGA-BP-4989       TCGA-BP-4992 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-BP-4995       TCGA-BP-4998       TCGA-BP-5001       TCGA-BP-5008 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-BP-5009       TCGA-BQ-5876       TCGA-BQ-5877       TCGA-BQ-5878 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-BQ-5879       TCGA-BQ-5880       TCGA-BQ-5881       TCGA-BQ-5882 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-BQ-5883       TCGA-BQ-5884       TCGA-BQ-5886       TCGA-BQ-5887 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-BQ-5888       TCGA-BQ-5889       TCGA-BQ-5890       TCGA-BQ-5892 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-BQ-5893       TCGA-BQ-5894       TCGA-BQ-7044       TCGA-BQ-7045 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-BQ-7046       TCGA-BQ-7048       TCGA-BQ-7050       TCGA-BQ-7051 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-BQ-7053       TCGA-BQ-7055       TCGA-BQ-7058       TCGA-BQ-7059 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-BQ-7060       TCGA-BQ-7061       TCGA-BQ-7062       TCGA-CJ-4870 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-CJ-4875       TCGA-CJ-4876       TCGA-CJ-4878       TCGA-CJ-4881 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-CJ-4887       TCGA-CJ-4889       TCGA-CJ-4890       TCGA-CJ-4895 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-CJ-4900       TCGA-CJ-5671       TCGA-CJ-5675       TCGA-CJ-5676 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-CJ-5681       TCGA-CJ-5683       TCGA-CJ-5686       TCGA-CJ-6031 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-CJ-6032       TCGA-CW-5585       TCGA-CW-5589       TCGA-CW-6087 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-CZ-4854       TCGA-CZ-4857       TCGA-CZ-4858       TCGA-CZ-5453 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-CZ-5454       TCGA-CZ-5455       TCGA-CZ-5457       TCGA-CZ-5459 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-CZ-5462       TCGA-CZ-5463       TCGA-CZ-5466       TCGA-CZ-5467 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-CZ-5469       TCGA-CZ-5470       TCGA-CZ-5989       TCGA-DV-5565 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-DV-5566       TCGA-DV-5569       TCGA-DW-5560       TCGA-DW-5561 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-DW-7834       TCGA-DW-7837       TCGA-DW-7838       TCGA-DW-7839 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-DW-7840       TCGA-DW-7842       TCGA-DZ-6131       TCGA-DZ-6132 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-DZ-6133       TCGA-DZ-6134       TCGA-DZ-6135       TCGA-EU-5904 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-EV-5901       TCGA-EV-5902       TCGA-EV-5903       TCGA-F9-A4JJ 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-G7-6789       TCGA-G7-6790       TCGA-G7-6792       TCGA-G7-6793 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-G7-6795       TCGA-G7-6796       TCGA-G7-7501       TCGA-G7-7502 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-G7-A4TM       TCGA-GL-6846       TCGA-GL-7773       TCGA-GL-7966 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-GL-8500       TCGA-GL-A4EM       TCGA-GL-A59T       TCGA-HE-7128 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-HE-7130       TCGA-HE-A5NJ       TCGA-IA-A40U       TCGA-IA-A40X 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-IA-A40Y       TCGA-IZ-8195       TCGA-IZ-8196       TCGA-IZ-A6M9 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-J7-6720       TCGA-J7-8537       TCGA-KL-8323       TCGA-KL-8324 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-KL-8327       TCGA-KL-8328       TCGA-KL-8331       TCGA-KL-8332 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-KL-8333       TCGA-KL-8334       TCGA-KL-8335       TCGA-KL-8336 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-KL-8338       TCGA-KL-8339       TCGA-KL-8340       TCGA-KL-8341 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-KL-8342       TCGA-KL-8343       TCGA-KL-8344       TCGA-KL-8345 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-KM-8438       TCGA-KM-8439       TCGA-KM-8441       TCGA-KM-8442 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-KM-8639       TCGA-KN-8418       TCGA-KN-8419       TCGA-KN-8422 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-KN-8423       TCGA-KN-8424       TCGA-KN-8426       TCGA-KN-8427 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-KN-8428       TCGA-KN-8429       TCGA-KN-8430       TCGA-KN-8431 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-KN-8432       TCGA-KN-8433       TCGA-KN-8434       TCGA-KN-8436 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-KN-8437       TCGA-KO-8404       TCGA-KO-8405       TCGA-KO-8408 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-KO-8409       TCGA-KO-8410       TCGA-KO-8413       TCGA-KO-8415 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-KO-8416       TCGA-KO-8417       TCGA-KV-A6GD       TCGA-KV-A6GE 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-P4-A5E6       TCGA-P4-A5E7       TCGA-P4-A5E8       TCGA-P4-A5EA 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-PJ-A5Z8       TCGA-PJ-A5Z9       TCGA-Q2-A5QZ 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SH3BP2 MUTATED        0      0      1      1      0
  SH3BP2 WILD-TYPE     26     43     61     99     46
D52V10, multiclass
[1] "Remove cluster labels:" "SH3BP2 MUTATED"        
clus
  SH3BP2 MUTATED SH3BP2 WILD-TYPE 
               2              275 
      TCGA-A3-3317       TCGA-A3-3358       TCGA-A3-3387       TCGA-A4-7286 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-A4-7287       TCGA-A4-7288       TCGA-A4-7585       TCGA-A4-7734 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-A4-7828       TCGA-A4-7915       TCGA-A4-7996       TCGA-A4-7997 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-A4-8098       TCGA-A4-8310       TCGA-A4-8312       TCGA-A4-8515 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-A4-8517       TCGA-A4-8518       TCGA-A4-8630       TCGA-A4-A57E 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-A4-A5XZ       TCGA-A4-A5Y0       TCGA-A4-A5Y1       TCGA-AK-3440 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-AK-3458       TCGA-AK-3465       TCGA-AL-3466       TCGA-AL-3472 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-AL-3473       TCGA-AL-7173       TCGA-AT-A5NU       TCGA-B0-4700 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-B0-4706       TCGA-B0-4710       TCGA-B0-4712       TCGA-B0-4810 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-B0-4811       TCGA-B0-4836       TCGA-B0-4837       TCGA-B0-4852 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-B0-5080       TCGA-B0-5085       TCGA-B0-5088       TCGA-B0-5399 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-B0-5691       TCGA-B0-5692       TCGA-B0-5693       TCGA-B0-5694 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-B0-5695       TCGA-B0-5696       TCGA-B0-5699       TCGA-B0-5702 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-B0-5705       TCGA-B0-5709       TCGA-B1-5398       TCGA-B1-A47N 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-B1-A654       TCGA-B1-A656       TCGA-B1-A657       TCGA-B2-3923 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-B2-3924       TCGA-B2-5633       TCGA-B2-5635       TCGA-B3-3925 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-B3-4104       TCGA-B3-8121       TCGA-B4-5377       TCGA-B8-4621 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-B8-5545       TCGA-B8-5550       TCGA-B8-5551       TCGA-B8-5552 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-B8-5553       TCGA-B9-4115       TCGA-B9-4117       TCGA-B9-5156 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-B9-A44B       TCGA-B9-A5W9       TCGA-B9-A69E       TCGA-BP-4173 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-BP-4340       TCGA-BP-4761       TCGA-BP-4770       TCGA-BP-4787 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-BP-4789       TCGA-BP-4790       TCGA-BP-4804       TCGA-BP-4807 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-BP-4961       TCGA-BP-4967       TCGA-BP-4968       TCGA-BP-4970 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-BP-4974       TCGA-BP-4976       TCGA-BP-4981       TCGA-BP-4982 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-BP-4985       TCGA-BP-4988       TCGA-BP-4989       TCGA-BP-4992 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-BP-4995       TCGA-BP-4998       TCGA-BP-5001       TCGA-BP-5008 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-BP-5009       TCGA-BQ-5876       TCGA-BQ-5877       TCGA-BQ-5878 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-BQ-5879       TCGA-BQ-5880       TCGA-BQ-5881       TCGA-BQ-5882 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-BQ-5883       TCGA-BQ-5884       TCGA-BQ-5886       TCGA-BQ-5887 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-BQ-5888       TCGA-BQ-5889       TCGA-BQ-5890       TCGA-BQ-5892 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-BQ-5893       TCGA-BQ-5894       TCGA-BQ-7044       TCGA-BQ-7045 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-BQ-7046       TCGA-BQ-7048       TCGA-BQ-7050       TCGA-BQ-7051 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-BQ-7053       TCGA-BQ-7055       TCGA-BQ-7058       TCGA-BQ-7059 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-BQ-7060       TCGA-BQ-7061       TCGA-BQ-7062       TCGA-CJ-4870 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-CJ-4875       TCGA-CJ-4876       TCGA-CJ-4878       TCGA-CJ-4881 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-CJ-4887       TCGA-CJ-4889       TCGA-CJ-4890       TCGA-CJ-4895 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-CJ-4900       TCGA-CJ-5671       TCGA-CJ-5675       TCGA-CJ-5676 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-CJ-5681       TCGA-CJ-5683       TCGA-CJ-5686       TCGA-CJ-6031 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-CJ-6032       TCGA-CW-5585       TCGA-CW-5589       TCGA-CW-6087 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-CZ-4854       TCGA-CZ-4857       TCGA-CZ-4858       TCGA-CZ-5453 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-CZ-5454       TCGA-CZ-5455       TCGA-CZ-5457       TCGA-CZ-5459 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-CZ-5462       TCGA-CZ-5463       TCGA-CZ-5466       TCGA-CZ-5467 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-CZ-5469       TCGA-CZ-5470       TCGA-CZ-5989       TCGA-DV-5565 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-DV-5566       TCGA-DV-5569       TCGA-DW-5560       TCGA-DW-5561 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-DW-7834       TCGA-DW-7837       TCGA-DW-7838       TCGA-DW-7839 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-DW-7840       TCGA-DW-7842       TCGA-DZ-6131       TCGA-DZ-6132 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-DZ-6133       TCGA-DZ-6134       TCGA-DZ-6135       TCGA-EU-5904 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-EV-5901       TCGA-EV-5902       TCGA-EV-5903       TCGA-F9-A4JJ 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-G7-6789       TCGA-G7-6790       TCGA-G7-6792       TCGA-G7-6793 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-G7-6795       TCGA-G7-6796       TCGA-G7-7501       TCGA-G7-7502 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-G7-A4TM       TCGA-GL-6846       TCGA-GL-7773       TCGA-GL-7966 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-GL-8500       TCGA-GL-A4EM       TCGA-GL-A59T       TCGA-HE-7128 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-HE-7130       TCGA-HE-A5NJ       TCGA-IA-A40U       TCGA-IA-A40X 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-IA-A40Y       TCGA-IZ-8195       TCGA-IZ-8196       TCGA-IZ-A6M9 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-J7-6720       TCGA-J7-8537       TCGA-KL-8323       TCGA-KL-8324 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-KL-8327       TCGA-KL-8328       TCGA-KL-8331       TCGA-KL-8332 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-KL-8333       TCGA-KL-8334       TCGA-KL-8335       TCGA-KL-8336 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-KL-8338       TCGA-KL-8339       TCGA-KL-8340       TCGA-KL-8341 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-KL-8342       TCGA-KL-8343       TCGA-KL-8344       TCGA-KL-8345 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-KM-8438       TCGA-KM-8439       TCGA-KM-8441       TCGA-KM-8442 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-KM-8639       TCGA-KN-8418       TCGA-KN-8419       TCGA-KN-8422 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-KN-8423       TCGA-KN-8424       TCGA-KN-8426       TCGA-KN-8427 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-KN-8428       TCGA-KN-8429       TCGA-KN-8430       TCGA-KN-8431 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-KN-8432       TCGA-KN-8433       TCGA-KN-8434       TCGA-KN-8436 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-KN-8437       TCGA-KO-8404       TCGA-KO-8405       TCGA-KO-8408 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-KO-8409       TCGA-KO-8410       TCGA-KO-8413       TCGA-KO-8415 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-KO-8416       TCGA-KO-8417       TCGA-KV-A6GD       TCGA-KV-A6GE 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-P4-A5E6       TCGA-P4-A5E7       TCGA-P4-A5E8       TCGA-P4-A5EA 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 
      TCGA-PJ-A5Z8       TCGA-PJ-A5Z9       TCGA-Q2-A5QZ 
"SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" "SH3BP2 WILD-TYPE" 

Clustering(53) Variable = FAM200A MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM200A MUTATED        2      0      0      0
  FAM200A WILD-TYPE     19     17      9     14
D53V1, multiclass
[1] "Remove cluster labels:" "FAM200A MUTATED"       
clus
  FAM200A MUTATED FAM200A WILD-TYPE 
                2                59 
       TCGA-A3-3311        TCGA-A3-3316        TCGA-A3-3317        TCGA-A3-3322 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-A3-3323        TCGA-A3-3326        TCGA-A3-3331        TCGA-A3-3347 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-A3-3349        TCGA-A3-3362        TCGA-A3-3363        TCGA-A3-3365 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-A3-3374        TCGA-A3-3380        TCGA-A3-3383        TCGA-AK-3427 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-AK-3440        TCGA-AK-3443        TCGA-AK-3453        TCGA-AK-3455 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-AK-3456        TCGA-AK-3465        TCGA-AL-3466        TCGA-AL-3467 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-AL-3472        TCGA-AL-3473        TCGA-AS-3777        TCGA-AS-3778 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-B2-3923        TCGA-B2-3924        TCGA-B2-4098        TCGA-B2-4099 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-B3-3925        TCGA-B3-3926        TCGA-B3-4103        TCGA-B3-4104 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-B8-4143        TCGA-B8-4148        TCGA-B8-4151        TCGA-B8-4619 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-B8-4620        TCGA-B9-4113        TCGA-B9-4114        TCGA-B9-4115 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-B9-4116        TCGA-B9-4117        TCGA-BP-4161        TCGA-BP-4163 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-BP-4164        TCGA-BP-4167        TCGA-CJ-4634        TCGA-CJ-4636 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-CJ-4637        TCGA-CJ-4638        TCGA-CJ-4639        TCGA-CJ-4640 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-CJ-4641        TCGA-CJ-4643        TCGA-CJ-4644 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM200A MUTATED        0      0      0      2      0
  FAM200A WILD-TYPE     11     17     14      8      9
D53V2, multiclass
[1] "Remove cluster labels:" "FAM200A MUTATED"       
clus
  FAM200A MUTATED FAM200A WILD-TYPE 
                2                59 
       TCGA-A3-3311        TCGA-A3-3316        TCGA-A3-3317        TCGA-A3-3322 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-A3-3323        TCGA-A3-3326        TCGA-A3-3331        TCGA-A3-3347 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-A3-3349        TCGA-A3-3362        TCGA-A3-3363        TCGA-A3-3365 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-A3-3374        TCGA-A3-3380        TCGA-A3-3383        TCGA-AK-3427 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-AK-3440        TCGA-AK-3443        TCGA-AK-3453        TCGA-AK-3455 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-AK-3456        TCGA-AK-3465        TCGA-AL-3466        TCGA-AL-3467 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-AL-3472        TCGA-AL-3473        TCGA-AS-3777        TCGA-AS-3778 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-B2-3923        TCGA-B2-3924        TCGA-B2-4098        TCGA-B2-4099 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-B3-3925        TCGA-B3-3926        TCGA-B3-4103        TCGA-B3-4104 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-B8-4143        TCGA-B8-4148        TCGA-B8-4151        TCGA-B8-4619 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-B8-4620        TCGA-B9-4113        TCGA-B9-4114        TCGA-B9-4115 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-B9-4116        TCGA-B9-4117        TCGA-BP-4161        TCGA-BP-4163 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-BP-4164        TCGA-BP-4167        TCGA-CJ-4634        TCGA-CJ-4636 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-CJ-4637        TCGA-CJ-4638        TCGA-CJ-4639        TCGA-CJ-4640 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-CJ-4641        TCGA-CJ-4643        TCGA-CJ-4644 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM200A MUTATED        0      2      3
  FAM200A WILD-TYPE    180    240    240
D53V3, multiclass
        clus
vv       FAM200A MUTATED FAM200A WILD-TYPE
  CLUS_1               0               180
  CLUS_2               2               240
  CLUS_3               3               240
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM200A MUTATED        0      1      0
  FAM200A WILD-TYPE    103    254    119
D53V4, multiclass
[1] "Remove cluster labels:" "FAM200A MUTATED"       
clus
  FAM200A MUTATED FAM200A WILD-TYPE 
                1               476 
       TCGA-A3-3357        TCGA-A3-3358        TCGA-A3-3367        TCGA-A3-3370 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-A3-3373        TCGA-A3-3376        TCGA-A3-3385        TCGA-A3-3387 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-A4-7286        TCGA-A4-7287        TCGA-A4-7288        TCGA-A4-7583 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-A4-7584        TCGA-A4-7585        TCGA-A4-7732        TCGA-A4-7734 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-A4-7828        TCGA-A4-7915        TCGA-A4-7996        TCGA-A4-7997 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-A4-8098        TCGA-A4-8310        TCGA-A4-8311        TCGA-A4-8312 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-A4-8515        TCGA-A4-8517        TCGA-A4-8518        TCGA-A4-8630 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-A4-A48D        TCGA-A4-A4ZT        TCGA-A4-A57E        TCGA-A4-A5DU 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-A4-A5XZ        TCGA-A4-A5Y0        TCGA-A4-A5Y1        TCGA-A4-A6HP 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-AK-3425        TCGA-AK-3428        TCGA-AK-3431        TCGA-AK-3434 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-AK-3440        TCGA-AK-3445        TCGA-AK-3450        TCGA-AK-3453 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-AK-3454        TCGA-AK-3458        TCGA-AK-3460        TCGA-AK-3461 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-AL-7173        TCGA-AT-A5NU        TCGA-B0-4690        TCGA-B0-4691 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-B0-4693        TCGA-B0-4694        TCGA-B0-4697        TCGA-B0-4700 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-B0-4703        TCGA-B0-4706        TCGA-B0-4707        TCGA-B0-4712 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-B0-4713        TCGA-B0-4714        TCGA-B0-4718        TCGA-B0-4810 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-B0-4811        TCGA-B0-4813        TCGA-B0-4814        TCGA-B0-4815 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-B0-4816        TCGA-B0-4817        TCGA-B0-4818        TCGA-B0-4819 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-B0-4822        TCGA-B0-4823        TCGA-B0-4824        TCGA-B0-4827 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-B0-4828        TCGA-B0-4841        TCGA-B0-4842        TCGA-B0-4843 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-B0-4844        TCGA-B0-4845        TCGA-B0-4846        TCGA-B0-4847 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-B0-4848        TCGA-B0-4849        TCGA-B0-4852        TCGA-B0-4945 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-B0-5080        TCGA-B0-5083        TCGA-B0-5092        TCGA-B0-5094 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-B0-5095        TCGA-B0-5096        TCGA-B0-5097        TCGA-B0-5098 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-B0-5099        TCGA-B0-5100        TCGA-B0-5102        TCGA-B0-5104 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-B0-5106        TCGA-B0-5107        TCGA-B0-5108        TCGA-B0-5109 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-B0-5110        TCGA-B0-5113        TCGA-B0-5115        TCGA-B0-5116 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-B0-5117        TCGA-B0-5119        TCGA-B0-5120        TCGA-B0-5121 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-B0-5399        TCGA-B0-5400        TCGA-B0-5402        TCGA-B0-5691 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-B0-5692        TCGA-B0-5693        TCGA-B0-5694        TCGA-B0-5695 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-B0-5696        TCGA-B0-5697        TCGA-B0-5698        TCGA-B0-5699 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-B0-5701        TCGA-B0-5702        TCGA-B0-5703        TCGA-B0-5705 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-B0-5706        TCGA-B0-5707        TCGA-B0-5709        TCGA-B0-5710 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-B0-5711        TCGA-B0-5712        TCGA-B0-5713        TCGA-B0-5812 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-B1-5398        TCGA-B1-A47M        TCGA-B1-A47N        TCGA-B1-A654 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-B1-A655        TCGA-B1-A656        TCGA-B1-A657        TCGA-B2-3924 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-B2-4101        TCGA-B2-5633        TCGA-B2-5635        TCGA-B2-5641 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-B3-8121        TCGA-B4-5377        TCGA-B4-5832        TCGA-B4-5834 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-B4-5835        TCGA-B4-5836        TCGA-B4-5838        TCGA-B4-5843 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-B4-5844        TCGA-B8-4146        TCGA-B8-4153        TCGA-B8-4621 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-B8-4622        TCGA-B8-5158        TCGA-B8-5159        TCGA-B8-5162 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-B8-5163        TCGA-B8-5164        TCGA-B8-5165        TCGA-B8-5545 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-B8-5546        TCGA-B8-5549        TCGA-B8-5550        TCGA-B8-5551 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-B8-5552        TCGA-B8-5553        TCGA-B9-5156        TCGA-B9-7268 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-B9-A44B        TCGA-B9-A5W7        TCGA-B9-A5W8        TCGA-B9-A5W9 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-B9-A69E        TCGA-BP-4177        TCGA-BP-4760        TCGA-BP-4770 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-BP-4782        TCGA-BP-4795        TCGA-BP-4801        TCGA-BP-4993 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-BP-5010        TCGA-BP-5168        TCGA-BP-5169        TCGA-BP-5170 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-BP-5173        TCGA-BP-5174        TCGA-BP-5175        TCGA-BP-5176 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-BP-5177        TCGA-BP-5178        TCGA-BP-5180        TCGA-BP-5181 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-BP-5182        TCGA-BP-5183        TCGA-BP-5184        TCGA-BP-5185 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-BP-5186        TCGA-BP-5187        TCGA-BP-5189        TCGA-BP-5190 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-BP-5191        TCGA-BP-5192        TCGA-BP-5194        TCGA-BP-5195 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-BP-5196        TCGA-BP-5198        TCGA-BP-5199        TCGA-BP-5200 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-BP-5201        TCGA-BP-5202        TCGA-BQ-5875        TCGA-BQ-5876 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-BQ-5877        TCGA-BQ-5878        TCGA-BQ-5879        TCGA-BQ-5880 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-BQ-5881        TCGA-BQ-5882        TCGA-BQ-5883        TCGA-BQ-5884 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-BQ-5885        TCGA-BQ-5886        TCGA-BQ-5887        TCGA-BQ-5888 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-BQ-5889        TCGA-BQ-5890        TCGA-BQ-5891        TCGA-BQ-5892 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-BQ-5893        TCGA-BQ-5894        TCGA-BQ-7044        TCGA-BQ-7045 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-BQ-7046        TCGA-BQ-7048        TCGA-BQ-7050        TCGA-BQ-7051 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-BQ-7053        TCGA-BQ-7055        TCGA-BQ-7058        TCGA-BQ-7059 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-BQ-7060        TCGA-BQ-7061        TCGA-BQ-7062        TCGA-CJ-4869 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-CJ-4882        TCGA-CJ-4897        TCGA-CJ-4901        TCGA-CJ-4902 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-CJ-4903        TCGA-CJ-4904        TCGA-CJ-4905        TCGA-CJ-4907 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-CJ-4908        TCGA-CJ-4912        TCGA-CJ-4913        TCGA-CJ-4916 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-CJ-4918        TCGA-CJ-4920        TCGA-CJ-4923        TCGA-CJ-5671 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-CJ-5672        TCGA-CJ-5675        TCGA-CJ-5676        TCGA-CJ-5677 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-CJ-5678        TCGA-CJ-5679        TCGA-CJ-5680        TCGA-CJ-5681 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-CJ-5682        TCGA-CJ-5683        TCGA-CJ-5684        TCGA-CJ-5686 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-CJ-6027        TCGA-CJ-6028        TCGA-CJ-6030        TCGA-CJ-6031 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-CJ-6032        TCGA-CJ-6033        TCGA-CW-5580        TCGA-CW-5581 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-CW-5583        TCGA-CW-5585        TCGA-CW-5588        TCGA-CW-5589 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-CW-5591        TCGA-CW-6087        TCGA-CW-6090        TCGA-CW-6093 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-CW-6097        TCGA-CZ-4853        TCGA-CZ-4856        TCGA-CZ-4859 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-CZ-4863        TCGA-CZ-4865        TCGA-CZ-4866        TCGA-CZ-5451 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-CZ-5452        TCGA-CZ-5453        TCGA-CZ-5454        TCGA-CZ-5455 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-CZ-5456        TCGA-CZ-5457        TCGA-CZ-5458        TCGA-CZ-5459 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-CZ-5460        TCGA-CZ-5461        TCGA-CZ-5462        TCGA-CZ-5463 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-CZ-5465        TCGA-CZ-5466        TCGA-CZ-5467        TCGA-CZ-5468 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-CZ-5469        TCGA-CZ-5470        TCGA-CZ-5982        TCGA-CZ-5984 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-CZ-5985        TCGA-CZ-5986        TCGA-CZ-5987        TCGA-CZ-5988 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-CZ-5989        TCGA-DV-5565        TCGA-DV-5566        TCGA-DV-5568 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-DV-5569        TCGA-DV-5574        TCGA-DV-5575        TCGA-DV-5576 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-DW-5560        TCGA-DW-5561        TCGA-DW-7834        TCGA-DW-7837 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-DW-7838        TCGA-DW-7839        TCGA-DW-7840        TCGA-DW-7841 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-DW-7842        TCGA-DW-7963        TCGA-DZ-6131        TCGA-DZ-6132 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-DZ-6133        TCGA-DZ-6134        TCGA-DZ-6135        TCGA-EU-5904 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-EU-5905        TCGA-EU-5906        TCGA-EU-5907        TCGA-EV-5901 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-EV-5902        TCGA-EV-5903        TCGA-F9-A4JJ        TCGA-G7-6789 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-G7-6790        TCGA-G7-6792        TCGA-G7-6793        TCGA-G7-6795 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-G7-6796        TCGA-G7-6797        TCGA-G7-7501        TCGA-G7-7502 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-G7-A4TM        TCGA-GL-6846        TCGA-GL-7773        TCGA-GL-7966 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-GL-8500        TCGA-GL-A4EM        TCGA-GL-A59R        TCGA-GL-A59T 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-HE-7128        TCGA-HE-7129        TCGA-HE-7130        TCGA-HE-A5NF 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-HE-A5NH        TCGA-HE-A5NI        TCGA-HE-A5NJ        TCGA-HE-A5NK 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-HE-A5NL        TCGA-IA-A40U        TCGA-IA-A40X        TCGA-IA-A40Y 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-IZ-8195        TCGA-IZ-8196        TCGA-IZ-A6M8        TCGA-IZ-A6M9 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-J7-6720        TCGA-J7-8537        TCGA-KL-8323        TCGA-KL-8324 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-KL-8325        TCGA-KL-8326        TCGA-KL-8327        TCGA-KL-8328 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-KL-8329        TCGA-KL-8330        TCGA-KL-8331        TCGA-KL-8332 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-KL-8333        TCGA-KL-8334        TCGA-KL-8335        TCGA-KL-8336 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-KL-8337        TCGA-KL-8338        TCGA-KL-8339        TCGA-KL-8340 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-KL-8341        TCGA-KL-8342        TCGA-KL-8343        TCGA-KL-8344 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-KL-8345        TCGA-KL-8346        TCGA-KM-8438        TCGA-KM-8439 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-KM-8440        TCGA-KM-8441        TCGA-KM-8442        TCGA-KM-8443 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-KM-8476        TCGA-KM-8477        TCGA-KM-8639        TCGA-KN-8418 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-KN-8419        TCGA-KN-8421        TCGA-KN-8422        TCGA-KN-8423 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-KN-8424        TCGA-KN-8425        TCGA-KN-8426        TCGA-KN-8427 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-KN-8428        TCGA-KN-8429        TCGA-KN-8430        TCGA-KN-8431 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-KN-8432        TCGA-KN-8433        TCGA-KN-8434        TCGA-KN-8435 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-KN-8436        TCGA-KN-8437        TCGA-KO-8403        TCGA-KO-8404 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-KO-8405        TCGA-KO-8406        TCGA-KO-8407        TCGA-KO-8408 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-KO-8409        TCGA-KO-8410        TCGA-KO-8411        TCGA-KO-8413 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-KO-8414        TCGA-KO-8415        TCGA-KO-8416        TCGA-KO-8417 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-KV-A6GD        TCGA-KV-A6GE        TCGA-MH-A55W        TCGA-MH-A55Z 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-MH-A560        TCGA-MH-A561        TCGA-MH-A562        TCGA-P4-A5E6 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-P4-A5E7        TCGA-P4-A5E8        TCGA-P4-A5EA        TCGA-P4-A5EB 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-P4-A5ED        TCGA-PJ-A5Z8        TCGA-PJ-A5Z9        TCGA-Q2-A5QZ 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM200A MUTATED        0      0      5      0
  FAM200A WILD-TYPE     98    174    240    149
D53V5, multiclass
        clus
vv       FAM200A MUTATED FAM200A WILD-TYPE
  CLUS_1               0                98
  CLUS_2               0               174
  CLUS_3               5               240
  CLUS_4               0               149
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FAM200A MUTATED        0      0      1      0      4      0
  FAM200A WILD-TYPE     80     90    176    138     86     91
D53V6, multiclass
        clus
vv       FAM200A MUTATED FAM200A WILD-TYPE
  CLUS_1               0                80
  CLUS_2               0                90
  CLUS_3               1               176
  CLUS_4               0               138
  CLUS_5               4                86
  CLUS_6               0                91
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM200A MUTATED        0      1      4
  FAM200A WILD-TYPE    214    147    292
D53V7, multiclass
        clus
vv       FAM200A MUTATED FAM200A WILD-TYPE
  CLUS_1               0               214
  CLUS_2               1               147
  CLUS_3               4               292
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM200A MUTATED        0      5      0
  FAM200A WILD-TYPE     72    471    110
D53V8, multiclass
        clus
vv       FAM200A MUTATED FAM200A WILD-TYPE
  CLUS_1               0                72
  CLUS_2               5               471
  CLUS_3               0               110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM200A MUTATED        0      0      0      1
  FAM200A WILD-TYPE     76     60     42     98
D53V9, multiclass
[1] "Remove cluster labels:" "FAM200A MUTATED"       
clus
  FAM200A MUTATED FAM200A WILD-TYPE 
                1               276 
       TCGA-A3-3317        TCGA-A3-3358        TCGA-A3-3387        TCGA-A4-7286 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-A4-7287        TCGA-A4-7288        TCGA-A4-7585        TCGA-A4-7734 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-A4-7828        TCGA-A4-7915        TCGA-A4-7996        TCGA-A4-7997 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-A4-8098        TCGA-A4-8310        TCGA-A4-8312        TCGA-A4-8515 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-A4-8517        TCGA-A4-8518        TCGA-A4-8630        TCGA-A4-A57E 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-A4-A5XZ        TCGA-A4-A5Y0        TCGA-A4-A5Y1        TCGA-AK-3440 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-AK-3458        TCGA-AK-3465        TCGA-AL-3466        TCGA-AL-3472 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-AL-3473        TCGA-AL-7173        TCGA-AT-A5NU        TCGA-B0-4700 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-B0-4706        TCGA-B0-4712        TCGA-B0-4810        TCGA-B0-4811 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-B0-4836        TCGA-B0-4837        TCGA-B0-4852        TCGA-B0-5080 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-B0-5085        TCGA-B0-5088        TCGA-B0-5399        TCGA-B0-5691 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-B0-5692        TCGA-B0-5693        TCGA-B0-5694        TCGA-B0-5695 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-B0-5696        TCGA-B0-5699        TCGA-B0-5702        TCGA-B0-5705 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-B0-5709        TCGA-B1-5398        TCGA-B1-A47N        TCGA-B1-A654 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-B1-A656        TCGA-B1-A657        TCGA-B2-3923        TCGA-B2-3924 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-B2-5633        TCGA-B2-5635        TCGA-B3-3925        TCGA-B3-4104 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-B3-8121        TCGA-B4-5377        TCGA-B4-5836        TCGA-B8-4621 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-B8-5545        TCGA-B8-5550        TCGA-B8-5551        TCGA-B8-5552 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-B8-5553        TCGA-B9-4115        TCGA-B9-4117        TCGA-B9-5156 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-B9-A44B        TCGA-B9-A5W9        TCGA-B9-A69E        TCGA-BP-4173 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-BP-4340        TCGA-BP-4761        TCGA-BP-4770        TCGA-BP-4787 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-BP-4789        TCGA-BP-4790        TCGA-BP-4804        TCGA-BP-4807 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-BP-4961        TCGA-BP-4967        TCGA-BP-4968        TCGA-BP-4970 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-BP-4974        TCGA-BP-4976        TCGA-BP-4981        TCGA-BP-4982 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-BP-4985        TCGA-BP-4988        TCGA-BP-4989        TCGA-BP-4992 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-BP-4995        TCGA-BP-4998        TCGA-BP-5001        TCGA-BP-5008 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-BP-5009        TCGA-BQ-5876        TCGA-BQ-5877        TCGA-BQ-5878 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-BQ-5879        TCGA-BQ-5880        TCGA-BQ-5881        TCGA-BQ-5882 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-BQ-5883        TCGA-BQ-5884        TCGA-BQ-5886        TCGA-BQ-5887 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-BQ-5888        TCGA-BQ-5889        TCGA-BQ-5890        TCGA-BQ-5891 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-BQ-5892        TCGA-BQ-5893        TCGA-BQ-5894        TCGA-BQ-7044 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-BQ-7045        TCGA-BQ-7046        TCGA-BQ-7048        TCGA-BQ-7050 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-BQ-7051        TCGA-BQ-7053        TCGA-BQ-7055        TCGA-BQ-7058 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-BQ-7059        TCGA-BQ-7060        TCGA-BQ-7061        TCGA-BQ-7062 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-CJ-4870        TCGA-CJ-4875        TCGA-CJ-4876        TCGA-CJ-4878 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-CJ-4881        TCGA-CJ-4887        TCGA-CJ-4889        TCGA-CJ-4890 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-CJ-4895        TCGA-CJ-4900        TCGA-CJ-5671        TCGA-CJ-5675 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-CJ-5676        TCGA-CJ-5681        TCGA-CJ-5683        TCGA-CJ-5686 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-CJ-6031        TCGA-CJ-6032        TCGA-CW-5585        TCGA-CW-5589 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-CW-6087        TCGA-CZ-4854        TCGA-CZ-4857        TCGA-CZ-4858 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-CZ-5453        TCGA-CZ-5454        TCGA-CZ-5455        TCGA-CZ-5457 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-CZ-5459        TCGA-CZ-5462        TCGA-CZ-5463        TCGA-CZ-5466 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-CZ-5467        TCGA-CZ-5469        TCGA-CZ-5470        TCGA-CZ-5989 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-DV-5565        TCGA-DV-5566        TCGA-DV-5569        TCGA-DW-5560 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-DW-5561        TCGA-DW-7834        TCGA-DW-7837        TCGA-DW-7838 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-DW-7839        TCGA-DW-7840        TCGA-DW-7842        TCGA-DZ-6131 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-DZ-6132        TCGA-DZ-6133        TCGA-DZ-6134        TCGA-DZ-6135 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-EU-5904        TCGA-EV-5901        TCGA-EV-5902        TCGA-EV-5903 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-F9-A4JJ        TCGA-G7-6789        TCGA-G7-6790        TCGA-G7-6792 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-G7-6793        TCGA-G7-6795        TCGA-G7-6796        TCGA-G7-7501 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-G7-7502        TCGA-G7-A4TM        TCGA-GL-6846        TCGA-GL-7773 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-GL-7966        TCGA-GL-8500        TCGA-GL-A4EM        TCGA-GL-A59T 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-HE-7128        TCGA-HE-7130        TCGA-HE-A5NJ        TCGA-IA-A40U 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-IA-A40X        TCGA-IA-A40Y        TCGA-IZ-8195        TCGA-IZ-8196 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-IZ-A6M9        TCGA-J7-6720        TCGA-J7-8537        TCGA-KL-8323 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-KL-8324        TCGA-KL-8327        TCGA-KL-8328        TCGA-KL-8331 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-KL-8332        TCGA-KL-8333        TCGA-KL-8334        TCGA-KL-8335 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-KL-8336        TCGA-KL-8338        TCGA-KL-8339        TCGA-KL-8340 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-KL-8341        TCGA-KL-8342        TCGA-KL-8343        TCGA-KL-8344 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-KL-8345        TCGA-KM-8438        TCGA-KM-8439        TCGA-KM-8441 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-KM-8442        TCGA-KM-8639        TCGA-KN-8418        TCGA-KN-8419 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-KN-8422        TCGA-KN-8423        TCGA-KN-8424        TCGA-KN-8426 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-KN-8427        TCGA-KN-8428        TCGA-KN-8429        TCGA-KN-8430 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-KN-8431        TCGA-KN-8432        TCGA-KN-8433        TCGA-KN-8434 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-KN-8436        TCGA-KN-8437        TCGA-KO-8404        TCGA-KO-8405 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-KO-8408        TCGA-KO-8409        TCGA-KO-8410        TCGA-KO-8413 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-KO-8415        TCGA-KO-8416        TCGA-KO-8417        TCGA-KV-A6GD 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-KV-A6GE        TCGA-P4-A5E6        TCGA-P4-A5E7        TCGA-P4-A5E8 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-P4-A5EA        TCGA-PJ-A5Z8        TCGA-PJ-A5Z9        TCGA-Q2-A5QZ 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM200A MUTATED        0      0      0      1      0
  FAM200A WILD-TYPE     26     43     62     99     46
D53V10, multiclass
[1] "Remove cluster labels:" "FAM200A MUTATED"       
clus
  FAM200A MUTATED FAM200A WILD-TYPE 
                1               276 
       TCGA-A3-3317        TCGA-A3-3358        TCGA-A3-3387        TCGA-A4-7286 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-A4-7287        TCGA-A4-7288        TCGA-A4-7585        TCGA-A4-7734 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-A4-7828        TCGA-A4-7915        TCGA-A4-7996        TCGA-A4-7997 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-A4-8098        TCGA-A4-8310        TCGA-A4-8312        TCGA-A4-8515 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-A4-8517        TCGA-A4-8518        TCGA-A4-8630        TCGA-A4-A57E 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-A4-A5XZ        TCGA-A4-A5Y0        TCGA-A4-A5Y1        TCGA-AK-3440 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-AK-3458        TCGA-AK-3465        TCGA-AL-3466        TCGA-AL-3472 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-AL-3473        TCGA-AL-7173        TCGA-AT-A5NU        TCGA-B0-4700 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-B0-4706        TCGA-B0-4712        TCGA-B0-4810        TCGA-B0-4811 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-B0-4836        TCGA-B0-4837        TCGA-B0-4852        TCGA-B0-5080 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-B0-5085        TCGA-B0-5088        TCGA-B0-5399        TCGA-B0-5691 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-B0-5692        TCGA-B0-5693        TCGA-B0-5694        TCGA-B0-5695 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-B0-5696        TCGA-B0-5699        TCGA-B0-5702        TCGA-B0-5705 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-B0-5709        TCGA-B1-5398        TCGA-B1-A47N        TCGA-B1-A654 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-B1-A656        TCGA-B1-A657        TCGA-B2-3923        TCGA-B2-3924 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-B2-5633        TCGA-B2-5635        TCGA-B3-3925        TCGA-B3-4104 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-B3-8121        TCGA-B4-5377        TCGA-B4-5836        TCGA-B8-4621 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-B8-5545        TCGA-B8-5550        TCGA-B8-5551        TCGA-B8-5552 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-B8-5553        TCGA-B9-4115        TCGA-B9-4117        TCGA-B9-5156 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-B9-A44B        TCGA-B9-A5W9        TCGA-B9-A69E        TCGA-BP-4173 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-BP-4340        TCGA-BP-4761        TCGA-BP-4770        TCGA-BP-4787 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-BP-4789        TCGA-BP-4790        TCGA-BP-4804        TCGA-BP-4807 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-BP-4961        TCGA-BP-4967        TCGA-BP-4968        TCGA-BP-4970 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-BP-4974        TCGA-BP-4976        TCGA-BP-4981        TCGA-BP-4982 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-BP-4985        TCGA-BP-4988        TCGA-BP-4989        TCGA-BP-4992 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-BP-4995        TCGA-BP-4998        TCGA-BP-5001        TCGA-BP-5008 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-BP-5009        TCGA-BQ-5876        TCGA-BQ-5877        TCGA-BQ-5878 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-BQ-5879        TCGA-BQ-5880        TCGA-BQ-5881        TCGA-BQ-5882 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-BQ-5883        TCGA-BQ-5884        TCGA-BQ-5886        TCGA-BQ-5887 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-BQ-5888        TCGA-BQ-5889        TCGA-BQ-5890        TCGA-BQ-5891 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-BQ-5892        TCGA-BQ-5893        TCGA-BQ-5894        TCGA-BQ-7044 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-BQ-7045        TCGA-BQ-7046        TCGA-BQ-7048        TCGA-BQ-7050 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-BQ-7051        TCGA-BQ-7053        TCGA-BQ-7055        TCGA-BQ-7058 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-BQ-7059        TCGA-BQ-7060        TCGA-BQ-7061        TCGA-BQ-7062 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-CJ-4870        TCGA-CJ-4875        TCGA-CJ-4876        TCGA-CJ-4878 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-CJ-4881        TCGA-CJ-4887        TCGA-CJ-4889        TCGA-CJ-4890 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-CJ-4895        TCGA-CJ-4900        TCGA-CJ-5671        TCGA-CJ-5675 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-CJ-5676        TCGA-CJ-5681        TCGA-CJ-5683        TCGA-CJ-5686 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-CJ-6031        TCGA-CJ-6032        TCGA-CW-5585        TCGA-CW-5589 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-CW-6087        TCGA-CZ-4854        TCGA-CZ-4857        TCGA-CZ-4858 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-CZ-5453        TCGA-CZ-5454        TCGA-CZ-5455        TCGA-CZ-5457 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-CZ-5459        TCGA-CZ-5462        TCGA-CZ-5463        TCGA-CZ-5466 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-CZ-5467        TCGA-CZ-5469        TCGA-CZ-5470        TCGA-CZ-5989 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-DV-5565        TCGA-DV-5566        TCGA-DV-5569        TCGA-DW-5560 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-DW-5561        TCGA-DW-7834        TCGA-DW-7837        TCGA-DW-7838 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-DW-7839        TCGA-DW-7840        TCGA-DW-7842        TCGA-DZ-6131 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-DZ-6132        TCGA-DZ-6133        TCGA-DZ-6134        TCGA-DZ-6135 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-EU-5904        TCGA-EV-5901        TCGA-EV-5902        TCGA-EV-5903 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-F9-A4JJ        TCGA-G7-6789        TCGA-G7-6790        TCGA-G7-6792 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-G7-6793        TCGA-G7-6795        TCGA-G7-6796        TCGA-G7-7501 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-G7-7502        TCGA-G7-A4TM        TCGA-GL-6846        TCGA-GL-7773 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-GL-7966        TCGA-GL-8500        TCGA-GL-A4EM        TCGA-GL-A59T 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-HE-7128        TCGA-HE-7130        TCGA-HE-A5NJ        TCGA-IA-A40U 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-IA-A40X        TCGA-IA-A40Y        TCGA-IZ-8195        TCGA-IZ-8196 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-IZ-A6M9        TCGA-J7-6720        TCGA-J7-8537        TCGA-KL-8323 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-KL-8324        TCGA-KL-8327        TCGA-KL-8328        TCGA-KL-8331 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-KL-8332        TCGA-KL-8333        TCGA-KL-8334        TCGA-KL-8335 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-KL-8336        TCGA-KL-8338        TCGA-KL-8339        TCGA-KL-8340 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-KL-8341        TCGA-KL-8342        TCGA-KL-8343        TCGA-KL-8344 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-KL-8345        TCGA-KM-8438        TCGA-KM-8439        TCGA-KM-8441 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-KM-8442        TCGA-KM-8639        TCGA-KN-8418        TCGA-KN-8419 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-KN-8422        TCGA-KN-8423        TCGA-KN-8424        TCGA-KN-8426 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-KN-8427        TCGA-KN-8428        TCGA-KN-8429        TCGA-KN-8430 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-KN-8431        TCGA-KN-8432        TCGA-KN-8433        TCGA-KN-8434 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-KN-8436        TCGA-KN-8437        TCGA-KO-8404        TCGA-KO-8405 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-KO-8408        TCGA-KO-8409        TCGA-KO-8410        TCGA-KO-8413 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-KO-8415        TCGA-KO-8416        TCGA-KO-8417        TCGA-KV-A6GD 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-KV-A6GE        TCGA-P4-A5E6        TCGA-P4-A5E7        TCGA-P4-A5E8 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 
       TCGA-P4-A5EA        TCGA-PJ-A5Z8        TCGA-PJ-A5Z9        TCGA-Q2-A5QZ 
"FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" "FAM200A WILD-TYPE" 

Clustering(54) Variable = RTL1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RTL1 MUTATED        0      0      0      0
  RTL1 WILD-TYPE     21     17      9     14
D54V1, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RTL1 MUTATED        0      0      0      0      0
  RTL1 WILD-TYPE     11     17     14     10      9
D54V2, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RTL1 MUTATED        2      1      4
  RTL1 WILD-TYPE    178    241    239
D54V3, multiclass
        clus
vv       RTL1 MUTATED RTL1 WILD-TYPE
  CLUS_1            2            178
  CLUS_2            1            241
  CLUS_3            4            239
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RTL1 MUTATED        2      4      1
  RTL1 WILD-TYPE    101    251    118
D54V4, multiclass
        clus
vv       RTL1 MUTATED RTL1 WILD-TYPE
  CLUS_1            2            101
  CLUS_2            4            251
  CLUS_3            1            118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RTL1 MUTATED        2      3      0      2
  RTL1 WILD-TYPE     96    171    245    147
D54V5, multiclass
        clus
vv       RTL1 MUTATED RTL1 WILD-TYPE
  CLUS_1            2             96
  CLUS_2            3            171
  CLUS_3            0            245
  CLUS_4            2            147
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RTL1 MUTATED        2      2      1      2      0      0
  RTL1 WILD-TYPE     78     88    176    136     90     91
D54V6, multiclass
        clus
vv       RTL1 MUTATED RTL1 WILD-TYPE
  CLUS_1            2             78
  CLUS_2            2             88
  CLUS_3            1            176
  CLUS_4            2            136
  CLUS_5            0             90
  CLUS_6            0             91
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RTL1 MUTATED        4      1      2
  RTL1 WILD-TYPE    210    147    294
D54V7, multiclass
        clus
vv       RTL1 MUTATED RTL1 WILD-TYPE
  CLUS_1            4            210
  CLUS_2            1            147
  CLUS_3            2            294
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RTL1 MUTATED        2      3      2
  RTL1 WILD-TYPE     70    473    108
D54V8, multiclass
        clus
vv       RTL1 MUTATED RTL1 WILD-TYPE
  CLUS_1            2             70
  CLUS_2            3            473
  CLUS_3            2            108
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RTL1 MUTATED        1      1      0      1
  RTL1 WILD-TYPE     75     59     42     98
D54V9, multiclass
        clus
vv       RTL1 MUTATED RTL1 WILD-TYPE
  CLUS_1            1             75
  CLUS_2            1             59
  CLUS_3            0             42
  CLUS_4            1             98
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RTL1 MUTATED        0      0      2      0      1
  RTL1 WILD-TYPE     26     43     60    100     45
D54V10, multiclass
        clus
vv       RTL1 MUTATED RTL1 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            0             43
  CLUS_3            2             60
  CLUS_4            0            100
  CLUS_5            1             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(55) Variable = NASP MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NASP MUTATED        0      0      0      0
  NASP WILD-TYPE     21     17      9     14
D55V1, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NASP MUTATED        0      0      0      0      0
  NASP WILD-TYPE     11     17     14     10      9
D55V2, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NASP MUTATED        2      0      2
  NASP WILD-TYPE    178    242    241
D55V3, multiclass
        clus
vv       NASP MUTATED NASP WILD-TYPE
  CLUS_1            2            178
  CLUS_2            0            242
  CLUS_3            2            241
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NASP MUTATED        3      1      0
  NASP WILD-TYPE    100    254    119
D55V4, multiclass
        clus
vv       NASP MUTATED NASP WILD-TYPE
  CLUS_1            3            100
  CLUS_2            1            254
  CLUS_3            0            119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NASP MUTATED        2      2      0      0
  NASP WILD-TYPE     96    172    245    149
D55V5, multiclass
        clus
vv       NASP MUTATED NASP WILD-TYPE
  CLUS_1            2             96
  CLUS_2            2            172
  CLUS_3            0            245
  CLUS_4            0            149
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NASP MUTATED        2      1      0      1      0      0
  NASP WILD-TYPE     78     89    177    137     90     91
D55V6, multiclass
        clus
vv       NASP MUTATED NASP WILD-TYPE
  CLUS_1            2             78
  CLUS_2            1             89
  CLUS_3            0            177
  CLUS_4            1            137
  CLUS_5            0             90
  CLUS_6            0             91
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NASP MUTATED        3      0      1
  NASP WILD-TYPE    211    148    295
D55V7, multiclass
        clus
vv       NASP MUTATED NASP WILD-TYPE
  CLUS_1            3            211
  CLUS_2            0            148
  CLUS_3            1            295
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NASP MUTATED        2      2      0
  NASP WILD-TYPE     70    474    110
D55V8, multiclass
        clus
vv       NASP MUTATED NASP WILD-TYPE
  CLUS_1            2             70
  CLUS_2            2            474
  CLUS_3            0            110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NASP MUTATED        0      2      1      0
  NASP WILD-TYPE     76     58     41     99
D55V9, multiclass
        clus
vv       NASP MUTATED NASP WILD-TYPE
  CLUS_1            0             76
  CLUS_2            2             58
  CLUS_3            1             41
  CLUS_4            0             99
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NASP MUTATED        0      0      1      0      2
  NASP WILD-TYPE     26     43     61    100     44
D55V10, multiclass
        clus
vv       NASP MUTATED NASP WILD-TYPE
  CLUS_1            0             26
  CLUS_2            0             43
  CLUS_3            1             61
  CLUS_4            0            100
  CLUS_5            2             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(56) Variable = RPL7A MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RPL7A MUTATED        0      0      0      0
  RPL7A WILD-TYPE     21     17      9     14
D56V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RPL7A MUTATED        0      0      0      0      0
  RPL7A WILD-TYPE     11     17     14     10      9
D56V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RPL7A MUTATED        1      1      1
  RPL7A WILD-TYPE    179    241    242
D56V3, multiclass
        clus
vv       RPL7A MUTATED RPL7A WILD-TYPE
  CLUS_1             1             179
  CLUS_2             1             241
  CLUS_3             1             242
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RPL7A MUTATED        1      0      2
  RPL7A WILD-TYPE    102    255    117
D56V4, multiclass
        clus
vv       RPL7A MUTATED RPL7A WILD-TYPE
  CLUS_1             1             102
  CLUS_2             0             255
  CLUS_3             2             117
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RPL7A MUTATED        1      0      0      2
  RPL7A WILD-TYPE     97    174    245    147
D56V5, multiclass
        clus
vv       RPL7A MUTATED RPL7A WILD-TYPE
  CLUS_1             1              97
  CLUS_2             0             174
  CLUS_3             0             245
  CLUS_4             2             147
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RPL7A MUTATED        0      2      0      0      0      1
  RPL7A WILD-TYPE     80     88    177    138     90     90
D56V6, multiclass
        clus
vv       RPL7A MUTATED RPL7A WILD-TYPE
  CLUS_1             0              80
  CLUS_2             2              88
  CLUS_3             0             177
  CLUS_4             0             138
  CLUS_5             0              90
  CLUS_6             1              90
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RPL7A MUTATED        2      1      0
  RPL7A WILD-TYPE    212    147    296
D56V7, multiclass
        clus
vv       RPL7A MUTATED RPL7A WILD-TYPE
  CLUS_1             2             212
  CLUS_2             1             147
  CLUS_3             0             296
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RPL7A MUTATED        0      1      2
  RPL7A WILD-TYPE     72    475    108
D56V8, multiclass
        clus
vv       RPL7A MUTATED RPL7A WILD-TYPE
  CLUS_1             0              72
  CLUS_2             1             475
  CLUS_3             2             108
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RPL7A MUTATED        0      0      1      0
  RPL7A WILD-TYPE     76     60     41     99
D56V9, multiclass
[1] "Remove cluster labels:" "RPL7A MUTATED"         
clus
  RPL7A MUTATED RPL7A WILD-TYPE 
              1             276 
     TCGA-A3-3317      TCGA-A3-3358      TCGA-A3-3387      TCGA-A4-7286 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-A4-7287      TCGA-A4-7288      TCGA-A4-7585      TCGA-A4-7734 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-A4-7828      TCGA-A4-7915      TCGA-A4-7996      TCGA-A4-7997 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-A4-8098      TCGA-A4-8310      TCGA-A4-8312      TCGA-A4-8515 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-A4-8517      TCGA-A4-8518      TCGA-A4-8630      TCGA-A4-A57E 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-A4-A5XZ      TCGA-A4-A5Y0      TCGA-A4-A5Y1      TCGA-AK-3440 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-AK-3458      TCGA-AK-3465      TCGA-AL-3466      TCGA-AL-3472 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-AL-3473      TCGA-AL-7173      TCGA-AT-A5NU      TCGA-B0-4700 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-B0-4706      TCGA-B0-4710      TCGA-B0-4712      TCGA-B0-4810 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-B0-4811      TCGA-B0-4836      TCGA-B0-4837      TCGA-B0-4852 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-B0-5080      TCGA-B0-5085      TCGA-B0-5088      TCGA-B0-5399 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-B0-5691      TCGA-B0-5692      TCGA-B0-5693      TCGA-B0-5694 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-B0-5695      TCGA-B0-5696      TCGA-B0-5699      TCGA-B0-5702 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-B0-5705      TCGA-B0-5709      TCGA-B1-5398      TCGA-B1-A47N 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-B1-A654      TCGA-B1-A656      TCGA-B1-A657      TCGA-B2-3923 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-B2-3924      TCGA-B2-5633      TCGA-B2-5635      TCGA-B3-3925 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-B3-4104      TCGA-B3-8121      TCGA-B4-5377      TCGA-B4-5836 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-B8-4621      TCGA-B8-5545      TCGA-B8-5550      TCGA-B8-5551 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-B8-5552      TCGA-B8-5553      TCGA-B9-4115      TCGA-B9-4117 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-B9-5156      TCGA-B9-A44B      TCGA-B9-A5W9      TCGA-B9-A69E 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-BP-4173      TCGA-BP-4340      TCGA-BP-4761      TCGA-BP-4770 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-BP-4787      TCGA-BP-4789      TCGA-BP-4790      TCGA-BP-4804 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-BP-4807      TCGA-BP-4961      TCGA-BP-4967      TCGA-BP-4968 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-BP-4970      TCGA-BP-4974      TCGA-BP-4976      TCGA-BP-4981 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-BP-4982      TCGA-BP-4985      TCGA-BP-4988      TCGA-BP-4989 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-BP-4992      TCGA-BP-4995      TCGA-BP-4998      TCGA-BP-5001 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-BP-5008      TCGA-BP-5009      TCGA-BQ-5876      TCGA-BQ-5877 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-BQ-5878      TCGA-BQ-5879      TCGA-BQ-5880      TCGA-BQ-5881 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-BQ-5882      TCGA-BQ-5883      TCGA-BQ-5884      TCGA-BQ-5886 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-BQ-5887      TCGA-BQ-5888      TCGA-BQ-5890      TCGA-BQ-5891 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-BQ-5892      TCGA-BQ-5893      TCGA-BQ-5894      TCGA-BQ-7044 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-BQ-7045      TCGA-BQ-7046      TCGA-BQ-7048      TCGA-BQ-7050 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-BQ-7051      TCGA-BQ-7053      TCGA-BQ-7055      TCGA-BQ-7058 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-BQ-7059      TCGA-BQ-7060      TCGA-BQ-7061      TCGA-BQ-7062 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-CJ-4870      TCGA-CJ-4875      TCGA-CJ-4876      TCGA-CJ-4878 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-CJ-4881      TCGA-CJ-4887      TCGA-CJ-4889      TCGA-CJ-4890 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-CJ-4895      TCGA-CJ-4900      TCGA-CJ-5671      TCGA-CJ-5675 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-CJ-5676      TCGA-CJ-5681      TCGA-CJ-5683      TCGA-CJ-5686 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-CJ-6031      TCGA-CJ-6032      TCGA-CW-5585      TCGA-CW-5589 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-CW-6087      TCGA-CZ-4854      TCGA-CZ-4857      TCGA-CZ-4858 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-CZ-5453      TCGA-CZ-5454      TCGA-CZ-5455      TCGA-CZ-5457 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-CZ-5459      TCGA-CZ-5462      TCGA-CZ-5463      TCGA-CZ-5466 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-CZ-5467      TCGA-CZ-5469      TCGA-CZ-5470      TCGA-CZ-5989 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-DV-5565      TCGA-DV-5566      TCGA-DV-5569      TCGA-DW-5560 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-DW-5561      TCGA-DW-7834      TCGA-DW-7837      TCGA-DW-7838 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-DW-7839      TCGA-DW-7840      TCGA-DW-7842      TCGA-DZ-6131 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-DZ-6132      TCGA-DZ-6133      TCGA-DZ-6134      TCGA-DZ-6135 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-EU-5904      TCGA-EV-5901      TCGA-EV-5902      TCGA-EV-5903 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-F9-A4JJ      TCGA-G7-6789      TCGA-G7-6790      TCGA-G7-6792 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-G7-6793      TCGA-G7-6795      TCGA-G7-6796      TCGA-G7-7501 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-G7-7502      TCGA-G7-A4TM      TCGA-GL-6846      TCGA-GL-7773 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-GL-7966      TCGA-GL-8500      TCGA-GL-A4EM      TCGA-GL-A59T 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-HE-7128      TCGA-HE-7130      TCGA-HE-A5NJ      TCGA-IA-A40U 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-IA-A40X      TCGA-IA-A40Y      TCGA-IZ-8195      TCGA-IZ-8196 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-IZ-A6M9      TCGA-J7-6720      TCGA-J7-8537      TCGA-KL-8323 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-KL-8324      TCGA-KL-8327      TCGA-KL-8328      TCGA-KL-8331 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-KL-8332      TCGA-KL-8333      TCGA-KL-8334      TCGA-KL-8335 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-KL-8336      TCGA-KL-8338      TCGA-KL-8339      TCGA-KL-8340 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-KL-8341      TCGA-KL-8342      TCGA-KL-8343      TCGA-KL-8344 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-KL-8345      TCGA-KM-8438      TCGA-KM-8439      TCGA-KM-8441 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-KM-8442      TCGA-KM-8639      TCGA-KN-8418      TCGA-KN-8419 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-KN-8422      TCGA-KN-8423      TCGA-KN-8424      TCGA-KN-8426 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-KN-8427      TCGA-KN-8428      TCGA-KN-8429      TCGA-KN-8430 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-KN-8431      TCGA-KN-8432      TCGA-KN-8433      TCGA-KN-8434 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-KN-8436      TCGA-KN-8437      TCGA-KO-8404      TCGA-KO-8405 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-KO-8408      TCGA-KO-8409      TCGA-KO-8410      TCGA-KO-8413 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-KO-8415      TCGA-KO-8416      TCGA-KO-8417      TCGA-KV-A6GD 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-KV-A6GE      TCGA-P4-A5E6      TCGA-P4-A5E7      TCGA-P4-A5E8 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-P4-A5EA      TCGA-PJ-A5Z8      TCGA-PJ-A5Z9      TCGA-Q2-A5QZ 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RPL7A MUTATED        0      0      1      0      0
  RPL7A WILD-TYPE     26     43     61    100     46
D56V10, multiclass
[1] "Remove cluster labels:" "RPL7A MUTATED"         
clus
  RPL7A MUTATED RPL7A WILD-TYPE 
              1             276 
     TCGA-A3-3317      TCGA-A3-3358      TCGA-A3-3387      TCGA-A4-7286 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-A4-7287      TCGA-A4-7288      TCGA-A4-7585      TCGA-A4-7734 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-A4-7828      TCGA-A4-7915      TCGA-A4-7996      TCGA-A4-7997 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-A4-8098      TCGA-A4-8310      TCGA-A4-8312      TCGA-A4-8515 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-A4-8517      TCGA-A4-8518      TCGA-A4-8630      TCGA-A4-A57E 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-A4-A5XZ      TCGA-A4-A5Y0      TCGA-A4-A5Y1      TCGA-AK-3440 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-AK-3458      TCGA-AK-3465      TCGA-AL-3466      TCGA-AL-3472 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-AL-3473      TCGA-AL-7173      TCGA-AT-A5NU      TCGA-B0-4700 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-B0-4706      TCGA-B0-4710      TCGA-B0-4712      TCGA-B0-4810 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-B0-4811      TCGA-B0-4836      TCGA-B0-4837      TCGA-B0-4852 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-B0-5080      TCGA-B0-5085      TCGA-B0-5088      TCGA-B0-5399 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-B0-5691      TCGA-B0-5692      TCGA-B0-5693      TCGA-B0-5694 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-B0-5695      TCGA-B0-5696      TCGA-B0-5699      TCGA-B0-5702 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-B0-5705      TCGA-B0-5709      TCGA-B1-5398      TCGA-B1-A47N 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-B1-A654      TCGA-B1-A656      TCGA-B1-A657      TCGA-B2-3923 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-B2-3924      TCGA-B2-5633      TCGA-B2-5635      TCGA-B3-3925 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-B3-4104      TCGA-B3-8121      TCGA-B4-5377      TCGA-B4-5836 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-B8-4621      TCGA-B8-5545      TCGA-B8-5550      TCGA-B8-5551 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-B8-5552      TCGA-B8-5553      TCGA-B9-4115      TCGA-B9-4117 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-B9-5156      TCGA-B9-A44B      TCGA-B9-A5W9      TCGA-B9-A69E 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-BP-4173      TCGA-BP-4340      TCGA-BP-4761      TCGA-BP-4770 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-BP-4787      TCGA-BP-4789      TCGA-BP-4790      TCGA-BP-4804 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-BP-4807      TCGA-BP-4961      TCGA-BP-4967      TCGA-BP-4968 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-BP-4970      TCGA-BP-4974      TCGA-BP-4976      TCGA-BP-4981 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-BP-4982      TCGA-BP-4985      TCGA-BP-4988      TCGA-BP-4989 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-BP-4992      TCGA-BP-4995      TCGA-BP-4998      TCGA-BP-5001 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-BP-5008      TCGA-BP-5009      TCGA-BQ-5876      TCGA-BQ-5877 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-BQ-5878      TCGA-BQ-5879      TCGA-BQ-5880      TCGA-BQ-5881 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-BQ-5882      TCGA-BQ-5883      TCGA-BQ-5884      TCGA-BQ-5886 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-BQ-5887      TCGA-BQ-5888      TCGA-BQ-5890      TCGA-BQ-5891 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-BQ-5892      TCGA-BQ-5893      TCGA-BQ-5894      TCGA-BQ-7044 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-BQ-7045      TCGA-BQ-7046      TCGA-BQ-7048      TCGA-BQ-7050 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-BQ-7051      TCGA-BQ-7053      TCGA-BQ-7055      TCGA-BQ-7058 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-BQ-7059      TCGA-BQ-7060      TCGA-BQ-7061      TCGA-BQ-7062 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-CJ-4870      TCGA-CJ-4875      TCGA-CJ-4876      TCGA-CJ-4878 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-CJ-4881      TCGA-CJ-4887      TCGA-CJ-4889      TCGA-CJ-4890 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-CJ-4895      TCGA-CJ-4900      TCGA-CJ-5671      TCGA-CJ-5675 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-CJ-5676      TCGA-CJ-5681      TCGA-CJ-5683      TCGA-CJ-5686 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-CJ-6031      TCGA-CJ-6032      TCGA-CW-5585      TCGA-CW-5589 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-CW-6087      TCGA-CZ-4854      TCGA-CZ-4857      TCGA-CZ-4858 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-CZ-5453      TCGA-CZ-5454      TCGA-CZ-5455      TCGA-CZ-5457 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-CZ-5459      TCGA-CZ-5462      TCGA-CZ-5463      TCGA-CZ-5466 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-CZ-5467      TCGA-CZ-5469      TCGA-CZ-5470      TCGA-CZ-5989 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-DV-5565      TCGA-DV-5566      TCGA-DV-5569      TCGA-DW-5560 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-DW-5561      TCGA-DW-7834      TCGA-DW-7837      TCGA-DW-7838 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-DW-7839      TCGA-DW-7840      TCGA-DW-7842      TCGA-DZ-6131 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-DZ-6132      TCGA-DZ-6133      TCGA-DZ-6134      TCGA-DZ-6135 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-EU-5904      TCGA-EV-5901      TCGA-EV-5902      TCGA-EV-5903 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-F9-A4JJ      TCGA-G7-6789      TCGA-G7-6790      TCGA-G7-6792 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-G7-6793      TCGA-G7-6795      TCGA-G7-6796      TCGA-G7-7501 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-G7-7502      TCGA-G7-A4TM      TCGA-GL-6846      TCGA-GL-7773 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-GL-7966      TCGA-GL-8500      TCGA-GL-A4EM      TCGA-GL-A59T 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-HE-7128      TCGA-HE-7130      TCGA-HE-A5NJ      TCGA-IA-A40U 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-IA-A40X      TCGA-IA-A40Y      TCGA-IZ-8195      TCGA-IZ-8196 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-IZ-A6M9      TCGA-J7-6720      TCGA-J7-8537      TCGA-KL-8323 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-KL-8324      TCGA-KL-8327      TCGA-KL-8328      TCGA-KL-8331 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-KL-8332      TCGA-KL-8333      TCGA-KL-8334      TCGA-KL-8335 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-KL-8336      TCGA-KL-8338      TCGA-KL-8339      TCGA-KL-8340 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-KL-8341      TCGA-KL-8342      TCGA-KL-8343      TCGA-KL-8344 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-KL-8345      TCGA-KM-8438      TCGA-KM-8439      TCGA-KM-8441 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-KM-8442      TCGA-KM-8639      TCGA-KN-8418      TCGA-KN-8419 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-KN-8422      TCGA-KN-8423      TCGA-KN-8424      TCGA-KN-8426 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-KN-8427      TCGA-KN-8428      TCGA-KN-8429      TCGA-KN-8430 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-KN-8431      TCGA-KN-8432      TCGA-KN-8433      TCGA-KN-8434 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-KN-8436      TCGA-KN-8437      TCGA-KO-8404      TCGA-KO-8405 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-KO-8408      TCGA-KO-8409      TCGA-KO-8410      TCGA-KO-8413 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-KO-8415      TCGA-KO-8416      TCGA-KO-8417      TCGA-KV-A6GD 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-KV-A6GE      TCGA-P4-A5E6      TCGA-P4-A5E7      TCGA-P4-A5E8 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 
     TCGA-P4-A5EA      TCGA-PJ-A5Z8      TCGA-PJ-A5Z9      TCGA-Q2-A5QZ 
"RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" "RPL7A WILD-TYPE" 

Clustering(57) Variable = UIMC1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UIMC1 MUTATED        0      0      0      0
  UIMC1 WILD-TYPE     21     17      9     14
D57V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UIMC1 MUTATED        0      0      0      0      0
  UIMC1 WILD-TYPE     11     17     14     10      9
D57V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  UIMC1 MUTATED        1      3      1
  UIMC1 WILD-TYPE    179    239    242
D57V3, multiclass
        clus
vv       UIMC1 MUTATED UIMC1 WILD-TYPE
  CLUS_1             1             179
  CLUS_2             3             239
  CLUS_3             1             242
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  UIMC1 MUTATED        0      4      0
  UIMC1 WILD-TYPE    103    251    119
D57V4, multiclass
        clus
vv       UIMC1 MUTATED UIMC1 WILD-TYPE
  CLUS_1             0             103
  CLUS_2             4             251
  CLUS_3             0             119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UIMC1 MUTATED        0      2      2      1
  UIMC1 WILD-TYPE     98    172    243    148
D57V5, multiclass
        clus
vv       UIMC1 MUTATED UIMC1 WILD-TYPE
  CLUS_1             0              98
  CLUS_2             2             172
  CLUS_3             2             243
  CLUS_4             1             148
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  UIMC1 MUTATED        0      1      1      3      0      0
  UIMC1 WILD-TYPE     80     89    176    135     90     91
D57V6, multiclass
        clus
vv       UIMC1 MUTATED UIMC1 WILD-TYPE
  CLUS_1             0              80
  CLUS_2             1              89
  CLUS_3             1             176
  CLUS_4             3             135
  CLUS_5             0              90
  CLUS_6             0              91
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  UIMC1 MUTATED        0      3      2
  UIMC1 WILD-TYPE    214    145    294
D57V7, multiclass
        clus
vv       UIMC1 MUTATED UIMC1 WILD-TYPE
  CLUS_1             0             214
  CLUS_2             3             145
  CLUS_3             2             294
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  UIMC1 MUTATED        0      5      0
  UIMC1 WILD-TYPE     72    471    110
D57V8, multiclass
        clus
vv       UIMC1 MUTATED UIMC1 WILD-TYPE
  CLUS_1             0              72
  CLUS_2             5             471
  CLUS_3             0             110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UIMC1 MUTATED        0      0      1      0
  UIMC1 WILD-TYPE     76     60     41     99
D57V9, multiclass
[1] "Remove cluster labels:" "UIMC1 MUTATED"         
clus
  UIMC1 MUTATED UIMC1 WILD-TYPE 
              1             276 
     TCGA-A3-3317      TCGA-A3-3358      TCGA-A3-3387      TCGA-A4-7286 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-A4-7287      TCGA-A4-7288      TCGA-A4-7585      TCGA-A4-7734 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-A4-7828      TCGA-A4-7915      TCGA-A4-7996      TCGA-A4-7997 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-A4-8098      TCGA-A4-8310      TCGA-A4-8312      TCGA-A4-8515 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-A4-8517      TCGA-A4-8518      TCGA-A4-8630      TCGA-A4-A57E 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-A4-A5XZ      TCGA-A4-A5Y0      TCGA-A4-A5Y1      TCGA-AK-3440 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AK-3458      TCGA-AK-3465      TCGA-AL-3466      TCGA-AL-3472 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AL-3473      TCGA-AL-7173      TCGA-AT-A5NU      TCGA-B0-4700 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-B0-4706      TCGA-B0-4710      TCGA-B0-4712      TCGA-B0-4810 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-B0-4811      TCGA-B0-4836      TCGA-B0-4837      TCGA-B0-4852 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-B0-5080      TCGA-B0-5085      TCGA-B0-5088      TCGA-B0-5399 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-B0-5691      TCGA-B0-5692      TCGA-B0-5693      TCGA-B0-5694 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-B0-5695      TCGA-B0-5696      TCGA-B0-5699      TCGA-B0-5702 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-B0-5705      TCGA-B0-5709      TCGA-B1-5398      TCGA-B1-A47N 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-B1-A654      TCGA-B1-A657      TCGA-B2-3923      TCGA-B2-3924 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-B2-5633      TCGA-B2-5635      TCGA-B3-3925      TCGA-B3-4104 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-B3-8121      TCGA-B4-5377      TCGA-B4-5836      TCGA-B8-4621 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-B8-5545      TCGA-B8-5550      TCGA-B8-5551      TCGA-B8-5552 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-B8-5553      TCGA-B9-4115      TCGA-B9-4117      TCGA-B9-5156 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-B9-A44B      TCGA-B9-A5W9      TCGA-B9-A69E      TCGA-BP-4173 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-BP-4340      TCGA-BP-4761      TCGA-BP-4770      TCGA-BP-4787 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-BP-4789      TCGA-BP-4790      TCGA-BP-4804      TCGA-BP-4807 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-BP-4961      TCGA-BP-4967      TCGA-BP-4968      TCGA-BP-4970 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-BP-4974      TCGA-BP-4976      TCGA-BP-4981      TCGA-BP-4982 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-BP-4985      TCGA-BP-4988      TCGA-BP-4989      TCGA-BP-4992 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-BP-4995      TCGA-BP-4998      TCGA-BP-5001      TCGA-BP-5008 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-BP-5009      TCGA-BQ-5876      TCGA-BQ-5877      TCGA-BQ-5878 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-BQ-5879      TCGA-BQ-5880      TCGA-BQ-5881      TCGA-BQ-5882 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-BQ-5883      TCGA-BQ-5884      TCGA-BQ-5886      TCGA-BQ-5887 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-BQ-5888      TCGA-BQ-5889      TCGA-BQ-5890      TCGA-BQ-5891 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-BQ-5892      TCGA-BQ-5893      TCGA-BQ-5894      TCGA-BQ-7044 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-BQ-7045      TCGA-BQ-7046      TCGA-BQ-7048      TCGA-BQ-7050 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-BQ-7051      TCGA-BQ-7053      TCGA-BQ-7055      TCGA-BQ-7058 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-BQ-7059      TCGA-BQ-7060      TCGA-BQ-7061      TCGA-BQ-7062 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-CJ-4870      TCGA-CJ-4875      TCGA-CJ-4876      TCGA-CJ-4878 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-CJ-4881      TCGA-CJ-4887      TCGA-CJ-4889      TCGA-CJ-4890 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-CJ-4895      TCGA-CJ-4900      TCGA-CJ-5671      TCGA-CJ-5675 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-CJ-5676      TCGA-CJ-5681      TCGA-CJ-5683      TCGA-CJ-5686 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-CJ-6031      TCGA-CJ-6032      TCGA-CW-5585      TCGA-CW-5589 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-CW-6087      TCGA-CZ-4854      TCGA-CZ-4857      TCGA-CZ-4858 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-CZ-5453      TCGA-CZ-5454      TCGA-CZ-5455      TCGA-CZ-5457 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-CZ-5459      TCGA-CZ-5462      TCGA-CZ-5463      TCGA-CZ-5466 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-CZ-5467      TCGA-CZ-5469      TCGA-CZ-5470      TCGA-CZ-5989 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-DV-5565      TCGA-DV-5566      TCGA-DV-5569      TCGA-DW-5560 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-DW-5561      TCGA-DW-7834      TCGA-DW-7837      TCGA-DW-7838 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-DW-7839      TCGA-DW-7840      TCGA-DW-7842      TCGA-DZ-6131 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-DZ-6132      TCGA-DZ-6133      TCGA-DZ-6134      TCGA-DZ-6135 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-EU-5904      TCGA-EV-5901      TCGA-EV-5902      TCGA-EV-5903 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-F9-A4JJ      TCGA-G7-6789      TCGA-G7-6790      TCGA-G7-6792 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-G7-6793      TCGA-G7-6795      TCGA-G7-6796      TCGA-G7-7501 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-G7-7502      TCGA-G7-A4TM      TCGA-GL-6846      TCGA-GL-7773 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-GL-7966      TCGA-GL-8500      TCGA-GL-A4EM      TCGA-GL-A59T 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-HE-7128      TCGA-HE-7130      TCGA-HE-A5NJ      TCGA-IA-A40U 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-IA-A40X      TCGA-IA-A40Y      TCGA-IZ-8195      TCGA-IZ-8196 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-IZ-A6M9      TCGA-J7-6720      TCGA-J7-8537      TCGA-KL-8323 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-KL-8324      TCGA-KL-8327      TCGA-KL-8328      TCGA-KL-8331 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-KL-8332      TCGA-KL-8333      TCGA-KL-8334      TCGA-KL-8335 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-KL-8336      TCGA-KL-8338      TCGA-KL-8339      TCGA-KL-8340 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-KL-8341      TCGA-KL-8342      TCGA-KL-8343      TCGA-KL-8344 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-KL-8345      TCGA-KM-8438      TCGA-KM-8439      TCGA-KM-8441 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-KM-8442      TCGA-KM-8639      TCGA-KN-8418      TCGA-KN-8419 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-KN-8422      TCGA-KN-8423      TCGA-KN-8424      TCGA-KN-8426 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-KN-8427      TCGA-KN-8428      TCGA-KN-8429      TCGA-KN-8430 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-KN-8431      TCGA-KN-8432      TCGA-KN-8433      TCGA-KN-8434 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-KN-8436      TCGA-KN-8437      TCGA-KO-8404      TCGA-KO-8405 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-KO-8408      TCGA-KO-8409      TCGA-KO-8410      TCGA-KO-8413 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-KO-8415      TCGA-KO-8416      TCGA-KO-8417      TCGA-KV-A6GD 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-KV-A6GE      TCGA-P4-A5E6      TCGA-P4-A5E7      TCGA-P4-A5E8 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-P4-A5EA      TCGA-PJ-A5Z8      TCGA-PJ-A5Z9      TCGA-Q2-A5QZ 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UIMC1 MUTATED        0      0      1      0      0
  UIMC1 WILD-TYPE     26     43     61    100     46
D57V10, multiclass
[1] "Remove cluster labels:" "UIMC1 MUTATED"         
clus
  UIMC1 MUTATED UIMC1 WILD-TYPE 
              1             276 
     TCGA-A3-3317      TCGA-A3-3358      TCGA-A3-3387      TCGA-A4-7286 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-A4-7287      TCGA-A4-7288      TCGA-A4-7585      TCGA-A4-7734 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-A4-7828      TCGA-A4-7915      TCGA-A4-7996      TCGA-A4-7997 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-A4-8098      TCGA-A4-8310      TCGA-A4-8312      TCGA-A4-8515 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-A4-8517      TCGA-A4-8518      TCGA-A4-8630      TCGA-A4-A57E 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-A4-A5XZ      TCGA-A4-A5Y0      TCGA-A4-A5Y1      TCGA-AK-3440 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AK-3458      TCGA-AK-3465      TCGA-AL-3466      TCGA-AL-3472 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AL-3473      TCGA-AL-7173      TCGA-AT-A5NU      TCGA-B0-4700 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-B0-4706      TCGA-B0-4710      TCGA-B0-4712      TCGA-B0-4810 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-B0-4811      TCGA-B0-4836      TCGA-B0-4837      TCGA-B0-4852 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-B0-5080      TCGA-B0-5085      TCGA-B0-5088      TCGA-B0-5399 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-B0-5691      TCGA-B0-5692      TCGA-B0-5693      TCGA-B0-5694 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-B0-5695      TCGA-B0-5696      TCGA-B0-5699      TCGA-B0-5702 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-B0-5705      TCGA-B0-5709      TCGA-B1-5398      TCGA-B1-A47N 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-B1-A654      TCGA-B1-A657      TCGA-B2-3923      TCGA-B2-3924 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-B2-5633      TCGA-B2-5635      TCGA-B3-3925      TCGA-B3-4104 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-B3-8121      TCGA-B4-5377      TCGA-B4-5836      TCGA-B8-4621 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-B8-5545      TCGA-B8-5550      TCGA-B8-5551      TCGA-B8-5552 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-B8-5553      TCGA-B9-4115      TCGA-B9-4117      TCGA-B9-5156 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-B9-A44B      TCGA-B9-A5W9      TCGA-B9-A69E      TCGA-BP-4173 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-BP-4340      TCGA-BP-4761      TCGA-BP-4770      TCGA-BP-4787 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-BP-4789      TCGA-BP-4790      TCGA-BP-4804      TCGA-BP-4807 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-BP-4961      TCGA-BP-4967      TCGA-BP-4968      TCGA-BP-4970 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-BP-4974      TCGA-BP-4976      TCGA-BP-4981      TCGA-BP-4982 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-BP-4985      TCGA-BP-4988      TCGA-BP-4989      TCGA-BP-4992 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-BP-4995      TCGA-BP-4998      TCGA-BP-5001      TCGA-BP-5008 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-BP-5009      TCGA-BQ-5876      TCGA-BQ-5877      TCGA-BQ-5878 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-BQ-5879      TCGA-BQ-5880      TCGA-BQ-5881      TCGA-BQ-5882 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-BQ-5883      TCGA-BQ-5884      TCGA-BQ-5886      TCGA-BQ-5887 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-BQ-5888      TCGA-BQ-5889      TCGA-BQ-5890      TCGA-BQ-5891 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-BQ-5892      TCGA-BQ-5893      TCGA-BQ-5894      TCGA-BQ-7044 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-BQ-7045      TCGA-BQ-7046      TCGA-BQ-7048      TCGA-BQ-7050 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-BQ-7051      TCGA-BQ-7053      TCGA-BQ-7055      TCGA-BQ-7058 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-BQ-7059      TCGA-BQ-7060      TCGA-BQ-7061      TCGA-BQ-7062 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-CJ-4870      TCGA-CJ-4875      TCGA-CJ-4876      TCGA-CJ-4878 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-CJ-4881      TCGA-CJ-4887      TCGA-CJ-4889      TCGA-CJ-4890 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-CJ-4895      TCGA-CJ-4900      TCGA-CJ-5671      TCGA-CJ-5675 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-CJ-5676      TCGA-CJ-5681      TCGA-CJ-5683      TCGA-CJ-5686 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-CJ-6031      TCGA-CJ-6032      TCGA-CW-5585      TCGA-CW-5589 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-CW-6087      TCGA-CZ-4854      TCGA-CZ-4857      TCGA-CZ-4858 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-CZ-5453      TCGA-CZ-5454      TCGA-CZ-5455      TCGA-CZ-5457 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-CZ-5459      TCGA-CZ-5462      TCGA-CZ-5463      TCGA-CZ-5466 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-CZ-5467      TCGA-CZ-5469      TCGA-CZ-5470      TCGA-CZ-5989 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-DV-5565      TCGA-DV-5566      TCGA-DV-5569      TCGA-DW-5560 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-DW-5561      TCGA-DW-7834      TCGA-DW-7837      TCGA-DW-7838 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-DW-7839      TCGA-DW-7840      TCGA-DW-7842      TCGA-DZ-6131 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-DZ-6132      TCGA-DZ-6133      TCGA-DZ-6134      TCGA-DZ-6135 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-EU-5904      TCGA-EV-5901      TCGA-EV-5902      TCGA-EV-5903 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-F9-A4JJ      TCGA-G7-6789      TCGA-G7-6790      TCGA-G7-6792 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-G7-6793      TCGA-G7-6795      TCGA-G7-6796      TCGA-G7-7501 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-G7-7502      TCGA-G7-A4TM      TCGA-GL-6846      TCGA-GL-7773 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-GL-7966      TCGA-GL-8500      TCGA-GL-A4EM      TCGA-GL-A59T 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-HE-7128      TCGA-HE-7130      TCGA-HE-A5NJ      TCGA-IA-A40U 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-IA-A40X      TCGA-IA-A40Y      TCGA-IZ-8195      TCGA-IZ-8196 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-IZ-A6M9      TCGA-J7-6720      TCGA-J7-8537      TCGA-KL-8323 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-KL-8324      TCGA-KL-8327      TCGA-KL-8328      TCGA-KL-8331 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-KL-8332      TCGA-KL-8333      TCGA-KL-8334      TCGA-KL-8335 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-KL-8336      TCGA-KL-8338      TCGA-KL-8339      TCGA-KL-8340 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-KL-8341      TCGA-KL-8342      TCGA-KL-8343      TCGA-KL-8344 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-KL-8345      TCGA-KM-8438      TCGA-KM-8439      TCGA-KM-8441 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-KM-8442      TCGA-KM-8639      TCGA-KN-8418      TCGA-KN-8419 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-KN-8422      TCGA-KN-8423      TCGA-KN-8424      TCGA-KN-8426 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-KN-8427      TCGA-KN-8428      TCGA-KN-8429      TCGA-KN-8430 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-KN-8431      TCGA-KN-8432      TCGA-KN-8433      TCGA-KN-8434 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-KN-8436      TCGA-KN-8437      TCGA-KO-8404      TCGA-KO-8405 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-KO-8408      TCGA-KO-8409      TCGA-KO-8410      TCGA-KO-8413 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-KO-8415      TCGA-KO-8416      TCGA-KO-8417      TCGA-KV-A6GD 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-KV-A6GE      TCGA-P4-A5E6      TCGA-P4-A5E7      TCGA-P4-A5E8 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-P4-A5EA      TCGA-PJ-A5Z8      TCGA-PJ-A5Z9      TCGA-Q2-A5QZ 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 

Clustering(58) Variable = TCEB1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TCEB1 MUTATED        0      0      0      0
  TCEB1 WILD-TYPE     21     17      9     14
D58V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TCEB1 MUTATED        0      0      0      0      0
  TCEB1 WILD-TYPE     11     17     14     10      9
D58V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TCEB1 MUTATED        0      3      0
  TCEB1 WILD-TYPE    180    239    243
D58V3, multiclass
        clus
vv       TCEB1 MUTATED TCEB1 WILD-TYPE
  CLUS_1             0             180
  CLUS_2             3             239
  CLUS_3             0             243
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TCEB1 MUTATED        0      1      0
  TCEB1 WILD-TYPE    103    254    119
D58V4, multiclass
[1] "Remove cluster labels:" "TCEB1 MUTATED"         
clus
  TCEB1 MUTATED TCEB1 WILD-TYPE 
              1             476 
     TCGA-A3-3357      TCGA-A3-3358      TCGA-A3-3367      TCGA-A3-3370 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-A3-3373      TCGA-A3-3376      TCGA-A3-3385      TCGA-A3-3387 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-A4-7286      TCGA-A4-7287      TCGA-A4-7288      TCGA-A4-7583 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-A4-7584      TCGA-A4-7585      TCGA-A4-7732      TCGA-A4-7734 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-A4-7828      TCGA-A4-7915      TCGA-A4-7996      TCGA-A4-7997 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-A4-8098      TCGA-A4-8310      TCGA-A4-8311      TCGA-A4-8312 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-A4-8515      TCGA-A4-8517      TCGA-A4-8518      TCGA-A4-8630 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-A4-A48D      TCGA-A4-A4ZT      TCGA-A4-A57E      TCGA-A4-A5DU 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-A4-A5XZ      TCGA-A4-A5Y0      TCGA-A4-A5Y1      TCGA-A4-A6HP 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-AK-3425      TCGA-AK-3428      TCGA-AK-3431      TCGA-AK-3434 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-AK-3440      TCGA-AK-3445      TCGA-AK-3450      TCGA-AK-3453 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-AK-3454      TCGA-AK-3458      TCGA-AK-3460      TCGA-AK-3461 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-AL-7173      TCGA-AT-A5NU      TCGA-B0-4690      TCGA-B0-4691 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-4693      TCGA-B0-4694      TCGA-B0-4697      TCGA-B0-4700 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-4703      TCGA-B0-4706      TCGA-B0-4707      TCGA-B0-4710 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-4712      TCGA-B0-4713      TCGA-B0-4714      TCGA-B0-4718 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-4810      TCGA-B0-4811      TCGA-B0-4813      TCGA-B0-4814 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-4815      TCGA-B0-4816      TCGA-B0-4817      TCGA-B0-4818 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-4819      TCGA-B0-4822      TCGA-B0-4823      TCGA-B0-4824 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-4827      TCGA-B0-4828      TCGA-B0-4841      TCGA-B0-4842 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-4843      TCGA-B0-4844      TCGA-B0-4845      TCGA-B0-4846 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-4847      TCGA-B0-4848      TCGA-B0-4849      TCGA-B0-4852 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-4945      TCGA-B0-5080      TCGA-B0-5083      TCGA-B0-5092 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-5094      TCGA-B0-5095      TCGA-B0-5096      TCGA-B0-5097 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-5098      TCGA-B0-5099      TCGA-B0-5100      TCGA-B0-5102 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-5104      TCGA-B0-5106      TCGA-B0-5107      TCGA-B0-5108 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-5109      TCGA-B0-5110      TCGA-B0-5113      TCGA-B0-5115 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-5116      TCGA-B0-5117      TCGA-B0-5119      TCGA-B0-5120 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-5121      TCGA-B0-5399      TCGA-B0-5400      TCGA-B0-5402 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-5691      TCGA-B0-5692      TCGA-B0-5693      TCGA-B0-5694 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-5695      TCGA-B0-5696      TCGA-B0-5697      TCGA-B0-5698 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-5699      TCGA-B0-5701      TCGA-B0-5702      TCGA-B0-5703 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-5705      TCGA-B0-5706      TCGA-B0-5707      TCGA-B0-5709 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-5710      TCGA-B0-5711      TCGA-B0-5712      TCGA-B0-5713 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-5812      TCGA-B1-5398      TCGA-B1-A47M      TCGA-B1-A47N 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B1-A654      TCGA-B1-A655      TCGA-B1-A656      TCGA-B1-A657 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B2-3924      TCGA-B2-4101      TCGA-B2-5633      TCGA-B2-5635 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B2-5641      TCGA-B3-8121      TCGA-B4-5377      TCGA-B4-5832 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B4-5834      TCGA-B4-5835      TCGA-B4-5836      TCGA-B4-5838 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B4-5843      TCGA-B4-5844      TCGA-B8-4146      TCGA-B8-4153 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B8-4621      TCGA-B8-4622      TCGA-B8-5158      TCGA-B8-5159 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B8-5162      TCGA-B8-5163      TCGA-B8-5164      TCGA-B8-5165 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B8-5546      TCGA-B8-5549      TCGA-B8-5550      TCGA-B8-5551 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B8-5552      TCGA-B8-5553      TCGA-B9-5156      TCGA-B9-7268 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B9-A44B      TCGA-B9-A5W7      TCGA-B9-A5W8      TCGA-B9-A5W9 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B9-A69E      TCGA-BP-4177      TCGA-BP-4760      TCGA-BP-4770 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BP-4782      TCGA-BP-4795      TCGA-BP-4801      TCGA-BP-4993 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BP-5010      TCGA-BP-5168      TCGA-BP-5169      TCGA-BP-5170 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BP-5173      TCGA-BP-5174      TCGA-BP-5175      TCGA-BP-5176 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BP-5177      TCGA-BP-5178      TCGA-BP-5180      TCGA-BP-5181 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BP-5182      TCGA-BP-5183      TCGA-BP-5184      TCGA-BP-5185 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BP-5186      TCGA-BP-5187      TCGA-BP-5189      TCGA-BP-5190 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BP-5191      TCGA-BP-5192      TCGA-BP-5194      TCGA-BP-5195 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BP-5196      TCGA-BP-5198      TCGA-BP-5199      TCGA-BP-5200 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BP-5201      TCGA-BP-5202      TCGA-BQ-5875      TCGA-BQ-5876 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BQ-5877      TCGA-BQ-5878      TCGA-BQ-5879      TCGA-BQ-5880 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BQ-5881      TCGA-BQ-5882      TCGA-BQ-5883      TCGA-BQ-5884 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BQ-5885      TCGA-BQ-5886      TCGA-BQ-5887      TCGA-BQ-5888 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BQ-5889      TCGA-BQ-5890      TCGA-BQ-5891      TCGA-BQ-5892 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BQ-5893      TCGA-BQ-5894      TCGA-BQ-7044      TCGA-BQ-7045 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BQ-7046      TCGA-BQ-7048      TCGA-BQ-7050      TCGA-BQ-7051 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BQ-7053      TCGA-BQ-7055      TCGA-BQ-7058      TCGA-BQ-7059 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BQ-7060      TCGA-BQ-7061      TCGA-BQ-7062      TCGA-CJ-4869 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CJ-4882      TCGA-CJ-4897      TCGA-CJ-4901      TCGA-CJ-4902 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CJ-4903      TCGA-CJ-4904      TCGA-CJ-4905      TCGA-CJ-4907 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CJ-4908      TCGA-CJ-4912      TCGA-CJ-4913      TCGA-CJ-4916 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CJ-4918      TCGA-CJ-4920      TCGA-CJ-4923      TCGA-CJ-5671 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CJ-5672      TCGA-CJ-5675      TCGA-CJ-5676      TCGA-CJ-5677 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CJ-5678      TCGA-CJ-5679      TCGA-CJ-5680      TCGA-CJ-5681 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CJ-5682      TCGA-CJ-5683      TCGA-CJ-5684      TCGA-CJ-5686 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CJ-6027      TCGA-CJ-6028      TCGA-CJ-6030      TCGA-CJ-6031 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CJ-6032      TCGA-CJ-6033      TCGA-CW-5580      TCGA-CW-5581 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CW-5583      TCGA-CW-5585      TCGA-CW-5588      TCGA-CW-5589 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CW-5591      TCGA-CW-6087      TCGA-CW-6090      TCGA-CW-6093 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CW-6097      TCGA-CZ-4853      TCGA-CZ-4856      TCGA-CZ-4859 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CZ-4863      TCGA-CZ-4865      TCGA-CZ-4866      TCGA-CZ-5451 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CZ-5452      TCGA-CZ-5453      TCGA-CZ-5454      TCGA-CZ-5455 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CZ-5456      TCGA-CZ-5457      TCGA-CZ-5458      TCGA-CZ-5459 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CZ-5460      TCGA-CZ-5461      TCGA-CZ-5462      TCGA-CZ-5463 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CZ-5465      TCGA-CZ-5466      TCGA-CZ-5467      TCGA-CZ-5468 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CZ-5469      TCGA-CZ-5470      TCGA-CZ-5982      TCGA-CZ-5984 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CZ-5985      TCGA-CZ-5986      TCGA-CZ-5987      TCGA-CZ-5988 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CZ-5989      TCGA-DV-5565      TCGA-DV-5566      TCGA-DV-5568 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-DV-5569      TCGA-DV-5574      TCGA-DV-5575      TCGA-DV-5576 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-DW-5560      TCGA-DW-5561      TCGA-DW-7834      TCGA-DW-7837 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-DW-7838      TCGA-DW-7839      TCGA-DW-7840      TCGA-DW-7841 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-DW-7842      TCGA-DW-7963      TCGA-DZ-6131      TCGA-DZ-6132 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-DZ-6133      TCGA-DZ-6134      TCGA-DZ-6135      TCGA-EU-5904 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-EU-5905      TCGA-EU-5906      TCGA-EU-5907      TCGA-EV-5901 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-EV-5902      TCGA-EV-5903      TCGA-F9-A4JJ      TCGA-G7-6789 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-G7-6790      TCGA-G7-6792      TCGA-G7-6793      TCGA-G7-6795 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-G7-6796      TCGA-G7-6797      TCGA-G7-7501      TCGA-G7-7502 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-G7-A4TM      TCGA-GL-6846      TCGA-GL-7773      TCGA-GL-7966 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-GL-8500      TCGA-GL-A4EM      TCGA-GL-A59R      TCGA-GL-A59T 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-HE-7128      TCGA-HE-7129      TCGA-HE-7130      TCGA-HE-A5NF 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-HE-A5NH      TCGA-HE-A5NI      TCGA-HE-A5NJ      TCGA-HE-A5NK 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-HE-A5NL      TCGA-IA-A40U      TCGA-IA-A40X      TCGA-IA-A40Y 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-IZ-8195      TCGA-IZ-8196      TCGA-IZ-A6M8      TCGA-IZ-A6M9 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-J7-6720      TCGA-J7-8537      TCGA-KL-8323      TCGA-KL-8324 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-KL-8325      TCGA-KL-8326      TCGA-KL-8327      TCGA-KL-8328 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-KL-8329      TCGA-KL-8330      TCGA-KL-8331      TCGA-KL-8332 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-KL-8333      TCGA-KL-8334      TCGA-KL-8335      TCGA-KL-8336 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-KL-8337      TCGA-KL-8338      TCGA-KL-8339      TCGA-KL-8340 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-KL-8341      TCGA-KL-8342      TCGA-KL-8343      TCGA-KL-8344 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-KL-8345      TCGA-KL-8346      TCGA-KM-8438      TCGA-KM-8439 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-KM-8440      TCGA-KM-8441      TCGA-KM-8442      TCGA-KM-8443 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-KM-8476      TCGA-KM-8477      TCGA-KM-8639      TCGA-KN-8418 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-KN-8419      TCGA-KN-8421      TCGA-KN-8422      TCGA-KN-8423 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-KN-8424      TCGA-KN-8425      TCGA-KN-8426      TCGA-KN-8427 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-KN-8428      TCGA-KN-8429      TCGA-KN-8430      TCGA-KN-8431 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-KN-8432      TCGA-KN-8433      TCGA-KN-8434      TCGA-KN-8435 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-KN-8436      TCGA-KN-8437      TCGA-KO-8403      TCGA-KO-8404 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-KO-8405      TCGA-KO-8406      TCGA-KO-8407      TCGA-KO-8408 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-KO-8409      TCGA-KO-8410      TCGA-KO-8411      TCGA-KO-8413 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-KO-8414      TCGA-KO-8415      TCGA-KO-8416      TCGA-KO-8417 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-KV-A6GD      TCGA-KV-A6GE      TCGA-MH-A55W      TCGA-MH-A55Z 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-MH-A560      TCGA-MH-A561      TCGA-MH-A562      TCGA-P4-A5E6 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-P4-A5E7      TCGA-P4-A5E8      TCGA-P4-A5EA      TCGA-P4-A5EB 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-P4-A5ED      TCGA-PJ-A5Z8      TCGA-PJ-A5Z9      TCGA-Q2-A5QZ 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TCEB1 MUTATED        0      1      2      0
  TCEB1 WILD-TYPE     98    173    243    149
D58V5, multiclass
        clus
vv       TCEB1 MUTATED TCEB1 WILD-TYPE
  CLUS_1             0              98
  CLUS_2             1             173
  CLUS_3             2             243
  CLUS_4             0             149
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TCEB1 MUTATED        0      0      2      0      1      0
  TCEB1 WILD-TYPE     80     90    175    138     89     91
D58V6, multiclass
        clus
vv       TCEB1 MUTATED TCEB1 WILD-TYPE
  CLUS_1             0              80
  CLUS_2             0              90
  CLUS_3             2             175
  CLUS_4             0             138
  CLUS_5             1              89
  CLUS_6             0              91
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TCEB1 MUTATED        0      2      1
  TCEB1 WILD-TYPE    214    146    295
D58V7, multiclass
        clus
vv       TCEB1 MUTATED TCEB1 WILD-TYPE
  CLUS_1             0             214
  CLUS_2             2             146
  CLUS_3             1             295
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TCEB1 MUTATED        0      3      0
  TCEB1 WILD-TYPE     72    473    110
D58V8, multiclass
        clus
vv       TCEB1 MUTATED TCEB1 WILD-TYPE
  CLUS_1             0              72
  CLUS_2             3             473
  CLUS_3             0             110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TCEB1 MUTATED        0      0      0      2
  TCEB1 WILD-TYPE     76     60     42     97
D58V9, multiclass
[1] "Remove cluster labels:" "TCEB1 MUTATED"         
clus
  TCEB1 MUTATED TCEB1 WILD-TYPE 
              2             275 
     TCGA-A3-3317      TCGA-A3-3358      TCGA-A3-3387      TCGA-A4-7286 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-A4-7287      TCGA-A4-7288      TCGA-A4-7585      TCGA-A4-7734 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-A4-7828      TCGA-A4-7915      TCGA-A4-7996      TCGA-A4-7997 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-A4-8098      TCGA-A4-8310      TCGA-A4-8312      TCGA-A4-8515 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-A4-8517      TCGA-A4-8518      TCGA-A4-8630      TCGA-A4-A57E 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-A4-A5XZ      TCGA-A4-A5Y0      TCGA-A4-A5Y1      TCGA-AK-3440 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-AK-3458      TCGA-AK-3465      TCGA-AL-3466      TCGA-AL-3472 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-AL-3473      TCGA-AL-7173      TCGA-AT-A5NU      TCGA-B0-4700 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-4706      TCGA-B0-4710      TCGA-B0-4712      TCGA-B0-4810 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-4811      TCGA-B0-4836      TCGA-B0-4837      TCGA-B0-4852 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-5080      TCGA-B0-5085      TCGA-B0-5088      TCGA-B0-5399 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-5691      TCGA-B0-5692      TCGA-B0-5693      TCGA-B0-5694 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-5695      TCGA-B0-5696      TCGA-B0-5699      TCGA-B0-5702 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-5705      TCGA-B0-5709      TCGA-B1-5398      TCGA-B1-A47N 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B1-A654      TCGA-B1-A656      TCGA-B1-A657      TCGA-B2-3923 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B2-3924      TCGA-B2-5633      TCGA-B2-5635      TCGA-B3-3925 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B3-4104      TCGA-B3-8121      TCGA-B4-5377      TCGA-B4-5836 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B8-4621      TCGA-B8-5550      TCGA-B8-5551      TCGA-B8-5552 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B8-5553      TCGA-B9-4115      TCGA-B9-4117      TCGA-B9-5156 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B9-A44B      TCGA-B9-A5W9      TCGA-B9-A69E      TCGA-BP-4173 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BP-4340      TCGA-BP-4761      TCGA-BP-4770      TCGA-BP-4787 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BP-4789      TCGA-BP-4790      TCGA-BP-4804      TCGA-BP-4807 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BP-4961      TCGA-BP-4967      TCGA-BP-4968      TCGA-BP-4970 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BP-4974      TCGA-BP-4976      TCGA-BP-4981      TCGA-BP-4982 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BP-4985      TCGA-BP-4988      TCGA-BP-4989      TCGA-BP-4992 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BP-4995      TCGA-BP-4998      TCGA-BP-5001      TCGA-BP-5008 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BP-5009      TCGA-BQ-5876      TCGA-BQ-5877      TCGA-BQ-5878 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BQ-5879      TCGA-BQ-5880      TCGA-BQ-5881      TCGA-BQ-5882 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BQ-5883      TCGA-BQ-5884      TCGA-BQ-5886      TCGA-BQ-5887 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BQ-5888      TCGA-BQ-5889      TCGA-BQ-5890      TCGA-BQ-5891 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BQ-5892      TCGA-BQ-5893      TCGA-BQ-5894      TCGA-BQ-7044 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BQ-7045      TCGA-BQ-7046      TCGA-BQ-7048      TCGA-BQ-7050 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BQ-7051      TCGA-BQ-7053      TCGA-BQ-7055      TCGA-BQ-7058 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BQ-7059      TCGA-BQ-7060      TCGA-BQ-7061      TCGA-BQ-7062 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CJ-4870      TCGA-CJ-4875      TCGA-CJ-4876      TCGA-CJ-4878 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CJ-4881      TCGA-CJ-4887      TCGA-CJ-4890      TCGA-CJ-4895 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CJ-4900      TCGA-CJ-5671      TCGA-CJ-5675      TCGA-CJ-5676 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CJ-5681      TCGA-CJ-5683      TCGA-CJ-5686      TCGA-CJ-6031 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CJ-6032      TCGA-CW-5585      TCGA-CW-5589      TCGA-CW-6087 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CZ-4854      TCGA-CZ-4857      TCGA-CZ-4858      TCGA-CZ-5453 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CZ-5454      TCGA-CZ-5455      TCGA-CZ-5457      TCGA-CZ-5459 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CZ-5462      TCGA-CZ-5463      TCGA-CZ-5466      TCGA-CZ-5467 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CZ-5469      TCGA-CZ-5470      TCGA-CZ-5989      TCGA-DV-5565 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-DV-5566      TCGA-DV-5569      TCGA-DW-5560      TCGA-DW-5561 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-DW-7834      TCGA-DW-7837      TCGA-DW-7838      TCGA-DW-7839 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-DW-7840      TCGA-DW-7842      TCGA-DZ-6131      TCGA-DZ-6132 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-DZ-6133      TCGA-DZ-6134      TCGA-DZ-6135      TCGA-EU-5904 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-EV-5901      TCGA-EV-5902      TCGA-EV-5903      TCGA-F9-A4JJ 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-G7-6789      TCGA-G7-6790      TCGA-G7-6792      TCGA-G7-6793 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-G7-6795      TCGA-G7-6796      TCGA-G7-7501      TCGA-G7-7502 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-G7-A4TM      TCGA-GL-6846      TCGA-GL-7773      TCGA-GL-7966 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-GL-8500      TCGA-GL-A4EM      TCGA-GL-A59T      TCGA-HE-7128 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-HE-7130      TCGA-HE-A5NJ      TCGA-IA-A40U      TCGA-IA-A40X 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-IA-A40Y      TCGA-IZ-8195      TCGA-IZ-8196      TCGA-IZ-A6M9 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-J7-6720      TCGA-J7-8537      TCGA-KL-8323      TCGA-KL-8324 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-KL-8327      TCGA-KL-8328      TCGA-KL-8331      TCGA-KL-8332 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-KL-8333      TCGA-KL-8334      TCGA-KL-8335      TCGA-KL-8336 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-KL-8338      TCGA-KL-8339      TCGA-KL-8340      TCGA-KL-8341 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-KL-8342      TCGA-KL-8343      TCGA-KL-8344      TCGA-KL-8345 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-KM-8438      TCGA-KM-8439      TCGA-KM-8441      TCGA-KM-8442 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-KM-8639      TCGA-KN-8418      TCGA-KN-8419      TCGA-KN-8422 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-KN-8423      TCGA-KN-8424      TCGA-KN-8426      TCGA-KN-8427 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-KN-8428      TCGA-KN-8429      TCGA-KN-8430      TCGA-KN-8431 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-KN-8432      TCGA-KN-8433      TCGA-KN-8434      TCGA-KN-8436 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-KN-8437      TCGA-KO-8404      TCGA-KO-8405      TCGA-KO-8408 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-KO-8409      TCGA-KO-8410      TCGA-KO-8413      TCGA-KO-8415 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-KO-8416      TCGA-KO-8417      TCGA-KV-A6GD      TCGA-KV-A6GE 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-P4-A5E6      TCGA-P4-A5E7      TCGA-P4-A5E8      TCGA-P4-A5EA 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-PJ-A5Z8      TCGA-PJ-A5Z9      TCGA-Q2-A5QZ 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TCEB1 MUTATED        0      0      0      2      0
  TCEB1 WILD-TYPE     26     43     62     98     46
D58V10, multiclass
[1] "Remove cluster labels:" "TCEB1 MUTATED"         
clus
  TCEB1 MUTATED TCEB1 WILD-TYPE 
              2             275 
     TCGA-A3-3317      TCGA-A3-3358      TCGA-A3-3387      TCGA-A4-7286 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-A4-7287      TCGA-A4-7288      TCGA-A4-7585      TCGA-A4-7734 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-A4-7828      TCGA-A4-7915      TCGA-A4-7996      TCGA-A4-7997 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-A4-8098      TCGA-A4-8310      TCGA-A4-8312      TCGA-A4-8515 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-A4-8517      TCGA-A4-8518      TCGA-A4-8630      TCGA-A4-A57E 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-A4-A5XZ      TCGA-A4-A5Y0      TCGA-A4-A5Y1      TCGA-AK-3440 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-AK-3458      TCGA-AK-3465      TCGA-AL-3466      TCGA-AL-3472 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-AL-3473      TCGA-AL-7173      TCGA-AT-A5NU      TCGA-B0-4700 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-4706      TCGA-B0-4710      TCGA-B0-4712      TCGA-B0-4810 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-4811      TCGA-B0-4836      TCGA-B0-4837      TCGA-B0-4852 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-5080      TCGA-B0-5085      TCGA-B0-5088      TCGA-B0-5399 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-5691      TCGA-B0-5692      TCGA-B0-5693      TCGA-B0-5694 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-5695      TCGA-B0-5696      TCGA-B0-5699      TCGA-B0-5702 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-5705      TCGA-B0-5709      TCGA-B1-5398      TCGA-B1-A47N 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B1-A654      TCGA-B1-A656      TCGA-B1-A657      TCGA-B2-3923 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B2-3924      TCGA-B2-5633      TCGA-B2-5635      TCGA-B3-3925 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B3-4104      TCGA-B3-8121      TCGA-B4-5377      TCGA-B4-5836 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B8-4621      TCGA-B8-5550      TCGA-B8-5551      TCGA-B8-5552 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B8-5553      TCGA-B9-4115      TCGA-B9-4117      TCGA-B9-5156 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B9-A44B      TCGA-B9-A5W9      TCGA-B9-A69E      TCGA-BP-4173 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BP-4340      TCGA-BP-4761      TCGA-BP-4770      TCGA-BP-4787 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BP-4789      TCGA-BP-4790      TCGA-BP-4804      TCGA-BP-4807 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BP-4961      TCGA-BP-4967      TCGA-BP-4968      TCGA-BP-4970 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BP-4974      TCGA-BP-4976      TCGA-BP-4981      TCGA-BP-4982 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BP-4985      TCGA-BP-4988      TCGA-BP-4989      TCGA-BP-4992 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BP-4995      TCGA-BP-4998      TCGA-BP-5001      TCGA-BP-5008 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BP-5009      TCGA-BQ-5876      TCGA-BQ-5877      TCGA-BQ-5878 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BQ-5879      TCGA-BQ-5880      TCGA-BQ-5881      TCGA-BQ-5882 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BQ-5883      TCGA-BQ-5884      TCGA-BQ-5886      TCGA-BQ-5887 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BQ-5888      TCGA-BQ-5889      TCGA-BQ-5890      TCGA-BQ-5891 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BQ-5892      TCGA-BQ-5893      TCGA-BQ-5894      TCGA-BQ-7044 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BQ-7045      TCGA-BQ-7046      TCGA-BQ-7048      TCGA-BQ-7050 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BQ-7051      TCGA-BQ-7053      TCGA-BQ-7055      TCGA-BQ-7058 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BQ-7059      TCGA-BQ-7060      TCGA-BQ-7061      TCGA-BQ-7062 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CJ-4870      TCGA-CJ-4875      TCGA-CJ-4876      TCGA-CJ-4878 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CJ-4881      TCGA-CJ-4887      TCGA-CJ-4890      TCGA-CJ-4895 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CJ-4900      TCGA-CJ-5671      TCGA-CJ-5675      TCGA-CJ-5676 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CJ-5681      TCGA-CJ-5683      TCGA-CJ-5686      TCGA-CJ-6031 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CJ-6032      TCGA-CW-5585      TCGA-CW-5589      TCGA-CW-6087 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CZ-4854      TCGA-CZ-4857      TCGA-CZ-4858      TCGA-CZ-5453 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CZ-5454      TCGA-CZ-5455      TCGA-CZ-5457      TCGA-CZ-5459 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CZ-5462      TCGA-CZ-5463      TCGA-CZ-5466      TCGA-CZ-5467 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CZ-5469      TCGA-CZ-5470      TCGA-CZ-5989      TCGA-DV-5565 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-DV-5566      TCGA-DV-5569      TCGA-DW-5560      TCGA-DW-5561 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-DW-7834      TCGA-DW-7837      TCGA-DW-7838      TCGA-DW-7839 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-DW-7840      TCGA-DW-7842      TCGA-DZ-6131      TCGA-DZ-6132 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-DZ-6133      TCGA-DZ-6134      TCGA-DZ-6135      TCGA-EU-5904 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-EV-5901      TCGA-EV-5902      TCGA-EV-5903      TCGA-F9-A4JJ 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-G7-6789      TCGA-G7-6790      TCGA-G7-6792      TCGA-G7-6793 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-G7-6795      TCGA-G7-6796      TCGA-G7-7501      TCGA-G7-7502 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-G7-A4TM      TCGA-GL-6846      TCGA-GL-7773      TCGA-GL-7966 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-GL-8500      TCGA-GL-A4EM      TCGA-GL-A59T      TCGA-HE-7128 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-HE-7130      TCGA-HE-A5NJ      TCGA-IA-A40U      TCGA-IA-A40X 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-IA-A40Y      TCGA-IZ-8195      TCGA-IZ-8196      TCGA-IZ-A6M9 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-J7-6720      TCGA-J7-8537      TCGA-KL-8323      TCGA-KL-8324 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-KL-8327      TCGA-KL-8328      TCGA-KL-8331      TCGA-KL-8332 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-KL-8333      TCGA-KL-8334      TCGA-KL-8335      TCGA-KL-8336 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-KL-8338      TCGA-KL-8339      TCGA-KL-8340      TCGA-KL-8341 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-KL-8342      TCGA-KL-8343      TCGA-KL-8344      TCGA-KL-8345 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-KM-8438      TCGA-KM-8439      TCGA-KM-8441      TCGA-KM-8442 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-KM-8639      TCGA-KN-8418      TCGA-KN-8419      TCGA-KN-8422 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-KN-8423      TCGA-KN-8424      TCGA-KN-8426      TCGA-KN-8427 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-KN-8428      TCGA-KN-8429      TCGA-KN-8430      TCGA-KN-8431 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-KN-8432      TCGA-KN-8433      TCGA-KN-8434      TCGA-KN-8436 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-KN-8437      TCGA-KO-8404      TCGA-KO-8405      TCGA-KO-8408 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-KO-8409      TCGA-KO-8410      TCGA-KO-8413      TCGA-KO-8415 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-KO-8416      TCGA-KO-8417      TCGA-KV-A6GD      TCGA-KV-A6GE 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-P4-A5E6      TCGA-P4-A5E7      TCGA-P4-A5E8      TCGA-P4-A5EA 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-PJ-A5Z8      TCGA-PJ-A5Z9      TCGA-Q2-A5QZ 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 

Clustering(59) Variable = SFMBT1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SFMBT1 MUTATED        0      0      0      0
  SFMBT1 WILD-TYPE     21     17      9     14
D59V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SFMBT1 MUTATED        0      0      0      0      0
  SFMBT1 WILD-TYPE     11     17     14     10      9
D59V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SFMBT1 MUTATED        1      0      2
  SFMBT1 WILD-TYPE    179    242    241
D59V3, multiclass
        clus
vv       SFMBT1 MUTATED SFMBT1 WILD-TYPE
  CLUS_1              1              179
  CLUS_2              0              242
  CLUS_3              2              241
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SFMBT1 MUTATED        0      1      1
  SFMBT1 WILD-TYPE    103    254    118
D59V4, multiclass
[1] "Remove cluster labels:" "SFMBT1 MUTATED"        
clus
  SFMBT1 MUTATED SFMBT1 WILD-TYPE 
               2              475 
      TCGA-A3-3357       TCGA-A3-3358       TCGA-A3-3367       TCGA-A3-3370 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-A3-3373       TCGA-A3-3376       TCGA-A3-3385       TCGA-A3-3387 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-A4-7286       TCGA-A4-7287       TCGA-A4-7288       TCGA-A4-7583 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-A4-7584       TCGA-A4-7585       TCGA-A4-7732       TCGA-A4-7734 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-A4-7828       TCGA-A4-7915       TCGA-A4-7996       TCGA-A4-7997 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-A4-8098       TCGA-A4-8310       TCGA-A4-8311       TCGA-A4-8312 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-A4-8515       TCGA-A4-8517       TCGA-A4-8518       TCGA-A4-8630 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-A4-A48D       TCGA-A4-A4ZT       TCGA-A4-A57E       TCGA-A4-A5DU 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-A4-A5XZ       TCGA-A4-A5Y0       TCGA-A4-A5Y1       TCGA-A4-A6HP 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-AK-3425       TCGA-AK-3428       TCGA-AK-3431       TCGA-AK-3434 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-AK-3440       TCGA-AK-3445       TCGA-AK-3450       TCGA-AK-3453 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-AK-3454       TCGA-AK-3458       TCGA-AK-3460       TCGA-AK-3461 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-AL-7173       TCGA-AT-A5NU       TCGA-B0-4690       TCGA-B0-4691 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-B0-4693       TCGA-B0-4694       TCGA-B0-4697       TCGA-B0-4700 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-B0-4703       TCGA-B0-4706       TCGA-B0-4707       TCGA-B0-4710 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-B0-4712       TCGA-B0-4713       TCGA-B0-4714       TCGA-B0-4718 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-B0-4810       TCGA-B0-4811       TCGA-B0-4813       TCGA-B0-4814 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-B0-4815       TCGA-B0-4816       TCGA-B0-4817       TCGA-B0-4818 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-B0-4819       TCGA-B0-4822       TCGA-B0-4823       TCGA-B0-4824 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-B0-4827       TCGA-B0-4828       TCGA-B0-4841       TCGA-B0-4842 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-B0-4843       TCGA-B0-4844       TCGA-B0-4845       TCGA-B0-4846 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-B0-4847       TCGA-B0-4848       TCGA-B0-4849       TCGA-B0-4852 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-B0-4945       TCGA-B0-5080       TCGA-B0-5083       TCGA-B0-5092 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-B0-5094       TCGA-B0-5095       TCGA-B0-5096       TCGA-B0-5097 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-B0-5098       TCGA-B0-5100       TCGA-B0-5102       TCGA-B0-5104 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-B0-5106       TCGA-B0-5107       TCGA-B0-5108       TCGA-B0-5109 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-B0-5110       TCGA-B0-5113       TCGA-B0-5115       TCGA-B0-5116 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-B0-5117       TCGA-B0-5119       TCGA-B0-5120       TCGA-B0-5121 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-B0-5399       TCGA-B0-5400       TCGA-B0-5402       TCGA-B0-5691 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-B0-5692       TCGA-B0-5693       TCGA-B0-5694       TCGA-B0-5695 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-B0-5696       TCGA-B0-5697       TCGA-B0-5698       TCGA-B0-5699 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-B0-5701       TCGA-B0-5702       TCGA-B0-5703       TCGA-B0-5705 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-B0-5706       TCGA-B0-5707       TCGA-B0-5709       TCGA-B0-5710 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-B0-5711       TCGA-B0-5712       TCGA-B0-5713       TCGA-B0-5812 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-B1-5398       TCGA-B1-A47M       TCGA-B1-A47N       TCGA-B1-A654 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-B1-A655       TCGA-B1-A656       TCGA-B1-A657       TCGA-B2-3924 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-B2-4101       TCGA-B2-5633       TCGA-B2-5635       TCGA-B2-5641 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-B3-8121       TCGA-B4-5377       TCGA-B4-5832       TCGA-B4-5834 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-B4-5835       TCGA-B4-5836       TCGA-B4-5838       TCGA-B4-5843 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-B4-5844       TCGA-B8-4146       TCGA-B8-4153       TCGA-B8-4621 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-B8-4622       TCGA-B8-5158       TCGA-B8-5159       TCGA-B8-5162 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-B8-5163       TCGA-B8-5164       TCGA-B8-5165       TCGA-B8-5545 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-B8-5546       TCGA-B8-5549       TCGA-B8-5550       TCGA-B8-5551 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-B8-5552       TCGA-B8-5553       TCGA-B9-5156       TCGA-B9-7268 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-B9-A44B       TCGA-B9-A5W7       TCGA-B9-A5W8       TCGA-B9-A5W9 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-B9-A69E       TCGA-BP-4177       TCGA-BP-4760       TCGA-BP-4770 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-BP-4782       TCGA-BP-4795       TCGA-BP-4801       TCGA-BP-4993 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-BP-5010       TCGA-BP-5168       TCGA-BP-5169       TCGA-BP-5170 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-BP-5173       TCGA-BP-5174       TCGA-BP-5175       TCGA-BP-5176 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-BP-5177       TCGA-BP-5178       TCGA-BP-5180       TCGA-BP-5181 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-BP-5182       TCGA-BP-5183       TCGA-BP-5184       TCGA-BP-5185 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-BP-5186       TCGA-BP-5187       TCGA-BP-5189       TCGA-BP-5190 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-BP-5191       TCGA-BP-5192       TCGA-BP-5194       TCGA-BP-5195 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-BP-5196       TCGA-BP-5198       TCGA-BP-5199       TCGA-BP-5200 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-BP-5201       TCGA-BP-5202       TCGA-BQ-5875       TCGA-BQ-5876 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-BQ-5877       TCGA-BQ-5878       TCGA-BQ-5879       TCGA-BQ-5880 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-BQ-5881       TCGA-BQ-5882       TCGA-BQ-5883       TCGA-BQ-5884 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-BQ-5885       TCGA-BQ-5886       TCGA-BQ-5887       TCGA-BQ-5888 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-BQ-5889       TCGA-BQ-5890       TCGA-BQ-5891       TCGA-BQ-5892 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-BQ-5893       TCGA-BQ-5894       TCGA-BQ-7044       TCGA-BQ-7045 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-BQ-7046       TCGA-BQ-7048       TCGA-BQ-7050       TCGA-BQ-7051 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-BQ-7053       TCGA-BQ-7055       TCGA-BQ-7058       TCGA-BQ-7059 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-BQ-7060       TCGA-BQ-7061       TCGA-BQ-7062       TCGA-CJ-4869 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-CJ-4882       TCGA-CJ-4897       TCGA-CJ-4901       TCGA-CJ-4902 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-CJ-4903       TCGA-CJ-4904       TCGA-CJ-4905       TCGA-CJ-4907 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-CJ-4908       TCGA-CJ-4912       TCGA-CJ-4913       TCGA-CJ-4916 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-CJ-4918       TCGA-CJ-4920       TCGA-CJ-4923       TCGA-CJ-5671 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-CJ-5672       TCGA-CJ-5675       TCGA-CJ-5676       TCGA-CJ-5677 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-CJ-5678       TCGA-CJ-5679       TCGA-CJ-5680       TCGA-CJ-5681 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-CJ-5682       TCGA-CJ-5683       TCGA-CJ-5684       TCGA-CJ-5686 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-CJ-6027       TCGA-CJ-6028       TCGA-CJ-6030       TCGA-CJ-6031 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-CJ-6032       TCGA-CJ-6033       TCGA-CW-5580       TCGA-CW-5581 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-CW-5583       TCGA-CW-5585       TCGA-CW-5588       TCGA-CW-5589 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-CW-5591       TCGA-CW-6087       TCGA-CW-6090       TCGA-CW-6093 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-CW-6097       TCGA-CZ-4853       TCGA-CZ-4856       TCGA-CZ-4859 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-CZ-4863       TCGA-CZ-4865       TCGA-CZ-4866       TCGA-CZ-5451 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-CZ-5452       TCGA-CZ-5453       TCGA-CZ-5454       TCGA-CZ-5455 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-CZ-5456       TCGA-CZ-5457       TCGA-CZ-5458       TCGA-CZ-5459 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-CZ-5460       TCGA-CZ-5461       TCGA-CZ-5462       TCGA-CZ-5463 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-CZ-5465       TCGA-CZ-5466       TCGA-CZ-5467       TCGA-CZ-5468 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-CZ-5469       TCGA-CZ-5470       TCGA-CZ-5982       TCGA-CZ-5984 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-CZ-5985       TCGA-CZ-5986       TCGA-CZ-5987       TCGA-CZ-5988 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-CZ-5989       TCGA-DV-5565       TCGA-DV-5566       TCGA-DV-5568 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-DV-5569       TCGA-DV-5574       TCGA-DV-5575       TCGA-DV-5576 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-DW-5560       TCGA-DW-5561       TCGA-DW-7834       TCGA-DW-7837 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-DW-7838       TCGA-DW-7839       TCGA-DW-7840       TCGA-DW-7841 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-DW-7842       TCGA-DW-7963       TCGA-DZ-6131       TCGA-DZ-6132 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-DZ-6134       TCGA-DZ-6135       TCGA-EU-5904       TCGA-EU-5905 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-EU-5906       TCGA-EU-5907       TCGA-EV-5901       TCGA-EV-5902 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-EV-5903       TCGA-F9-A4JJ       TCGA-G7-6789       TCGA-G7-6790 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-G7-6792       TCGA-G7-6793       TCGA-G7-6795       TCGA-G7-6796 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-G7-6797       TCGA-G7-7501       TCGA-G7-7502       TCGA-G7-A4TM 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-GL-6846       TCGA-GL-7773       TCGA-GL-7966       TCGA-GL-8500 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-GL-A4EM       TCGA-GL-A59R       TCGA-GL-A59T       TCGA-HE-7128 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-HE-7129       TCGA-HE-7130       TCGA-HE-A5NF       TCGA-HE-A5NH 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-HE-A5NI       TCGA-HE-A5NJ       TCGA-HE-A5NK       TCGA-HE-A5NL 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-IA-A40U       TCGA-IA-A40X       TCGA-IA-A40Y       TCGA-IZ-8195 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-IZ-8196       TCGA-IZ-A6M8       TCGA-IZ-A6M9       TCGA-J7-6720 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-J7-8537       TCGA-KL-8323       TCGA-KL-8324       TCGA-KL-8325 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-KL-8326       TCGA-KL-8327       TCGA-KL-8328       TCGA-KL-8329 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-KL-8330       TCGA-KL-8331       TCGA-KL-8332       TCGA-KL-8333 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-KL-8334       TCGA-KL-8335       TCGA-KL-8336       TCGA-KL-8337 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-KL-8338       TCGA-KL-8339       TCGA-KL-8340       TCGA-KL-8341 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-KL-8342       TCGA-KL-8343       TCGA-KL-8344       TCGA-KL-8345 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-KL-8346       TCGA-KM-8438       TCGA-KM-8439       TCGA-KM-8440 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-KM-8441       TCGA-KM-8442       TCGA-KM-8443       TCGA-KM-8476 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-KM-8477       TCGA-KM-8639       TCGA-KN-8418       TCGA-KN-8419 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-KN-8421       TCGA-KN-8422       TCGA-KN-8423       TCGA-KN-8424 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-KN-8425       TCGA-KN-8426       TCGA-KN-8427       TCGA-KN-8428 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-KN-8429       TCGA-KN-8430       TCGA-KN-8431       TCGA-KN-8432 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-KN-8433       TCGA-KN-8434       TCGA-KN-8435       TCGA-KN-8436 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-KN-8437       TCGA-KO-8403       TCGA-KO-8404       TCGA-KO-8405 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-KO-8406       TCGA-KO-8407       TCGA-KO-8408       TCGA-KO-8409 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-KO-8410       TCGA-KO-8411       TCGA-KO-8413       TCGA-KO-8414 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-KO-8415       TCGA-KO-8416       TCGA-KO-8417       TCGA-KV-A6GD 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-KV-A6GE       TCGA-MH-A55W       TCGA-MH-A55Z       TCGA-MH-A560 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-MH-A561       TCGA-MH-A562       TCGA-P4-A5E6       TCGA-P4-A5E7 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-P4-A5E8       TCGA-P4-A5EA       TCGA-P4-A5EB       TCGA-P4-A5ED 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-PJ-A5Z8       TCGA-PJ-A5Z9       TCGA-Q2-A5QZ 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SFMBT1 MUTATED        0      0      2      1
  SFMBT1 WILD-TYPE     98    174    243    148
D59V5, multiclass
        clus
vv       SFMBT1 MUTATED SFMBT1 WILD-TYPE
  CLUS_1              0               98
  CLUS_2              0              174
  CLUS_3              2              243
  CLUS_4              1              148
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SFMBT1 MUTATED        0      0      1      0      1      1
  SFMBT1 WILD-TYPE     80     90    176    138     89     90
D59V6, multiclass
        clus
vv       SFMBT1 MUTATED SFMBT1 WILD-TYPE
  CLUS_1              0               80
  CLUS_2              0               90
  CLUS_3              1              176
  CLUS_4              0              138
  CLUS_5              1               89
  CLUS_6              1               90
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SFMBT1 MUTATED        1      0      2
  SFMBT1 WILD-TYPE    213    148    294
D59V7, multiclass
        clus
vv       SFMBT1 MUTATED SFMBT1 WILD-TYPE
  CLUS_1              1              213
  CLUS_2              0              148
  CLUS_3              2              294
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SFMBT1 MUTATED        0      2      1
  SFMBT1 WILD-TYPE     72    474    109
D59V8, multiclass
        clus
vv       SFMBT1 MUTATED SFMBT1 WILD-TYPE
  CLUS_1              0               72
  CLUS_2              2              474
  CLUS_3              1              109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SFMBT1 MUTATED        1      0      0      0
  SFMBT1 WILD-TYPE     75     60     42     99
D59V9, multiclass
[1] "Remove cluster labels:" "SFMBT1 MUTATED"        
clus
  SFMBT1 MUTATED SFMBT1 WILD-TYPE 
               1              276 
      TCGA-A3-3317       TCGA-A3-3358       TCGA-A3-3387       TCGA-A4-7286 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-A4-7287       TCGA-A4-7288       TCGA-A4-7585       TCGA-A4-7734 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-A4-7828       TCGA-A4-7915       TCGA-A4-7996       TCGA-A4-7997 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-A4-8098       TCGA-A4-8310       TCGA-A4-8312       TCGA-A4-8515 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-A4-8517       TCGA-A4-8518       TCGA-A4-8630       TCGA-A4-A57E 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-A4-A5XZ       TCGA-A4-A5Y0       TCGA-A4-A5Y1       TCGA-AK-3440 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-AK-3458       TCGA-AK-3465       TCGA-AL-3466       TCGA-AL-3472 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-AL-3473       TCGA-AL-7173       TCGA-AT-A5NU       TCGA-B0-4700 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-B0-4706       TCGA-B0-4710       TCGA-B0-4712       TCGA-B0-4810 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-B0-4811       TCGA-B0-4836       TCGA-B0-4837       TCGA-B0-4852 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-B0-5080       TCGA-B0-5085       TCGA-B0-5088       TCGA-B0-5399 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-B0-5691       TCGA-B0-5692       TCGA-B0-5693       TCGA-B0-5694 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-B0-5695       TCGA-B0-5696       TCGA-B0-5699       TCGA-B0-5702 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-B0-5705       TCGA-B0-5709       TCGA-B1-5398       TCGA-B1-A47N 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-B1-A654       TCGA-B1-A656       TCGA-B1-A657       TCGA-B2-3923 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-B2-3924       TCGA-B2-5633       TCGA-B2-5635       TCGA-B3-3925 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-B3-4104       TCGA-B3-8121       TCGA-B4-5377       TCGA-B4-5836 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-B8-4621       TCGA-B8-5545       TCGA-B8-5550       TCGA-B8-5551 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-B8-5552       TCGA-B8-5553       TCGA-B9-4115       TCGA-B9-4117 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-B9-5156       TCGA-B9-A44B       TCGA-B9-A5W9       TCGA-B9-A69E 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-BP-4173       TCGA-BP-4340       TCGA-BP-4761       TCGA-BP-4770 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-BP-4787       TCGA-BP-4789       TCGA-BP-4790       TCGA-BP-4804 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-BP-4807       TCGA-BP-4961       TCGA-BP-4967       TCGA-BP-4968 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-BP-4970       TCGA-BP-4974       TCGA-BP-4976       TCGA-BP-4981 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-BP-4982       TCGA-BP-4985       TCGA-BP-4988       TCGA-BP-4989 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-BP-4992       TCGA-BP-4995       TCGA-BP-4998       TCGA-BP-5001 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-BP-5008       TCGA-BP-5009       TCGA-BQ-5876       TCGA-BQ-5877 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-BQ-5878       TCGA-BQ-5879       TCGA-BQ-5880       TCGA-BQ-5881 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-BQ-5882       TCGA-BQ-5883       TCGA-BQ-5884       TCGA-BQ-5886 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-BQ-5887       TCGA-BQ-5888       TCGA-BQ-5889       TCGA-BQ-5890 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-BQ-5891       TCGA-BQ-5892       TCGA-BQ-5893       TCGA-BQ-5894 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-BQ-7044       TCGA-BQ-7045       TCGA-BQ-7046       TCGA-BQ-7048 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-BQ-7050       TCGA-BQ-7051       TCGA-BQ-7053       TCGA-BQ-7055 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-BQ-7058       TCGA-BQ-7059       TCGA-BQ-7060       TCGA-BQ-7061 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-BQ-7062       TCGA-CJ-4870       TCGA-CJ-4875       TCGA-CJ-4876 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-CJ-4878       TCGA-CJ-4881       TCGA-CJ-4887       TCGA-CJ-4889 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-CJ-4890       TCGA-CJ-4895       TCGA-CJ-4900       TCGA-CJ-5671 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-CJ-5675       TCGA-CJ-5676       TCGA-CJ-5681       TCGA-CJ-5683 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-CJ-5686       TCGA-CJ-6031       TCGA-CJ-6032       TCGA-CW-5585 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-CW-5589       TCGA-CW-6087       TCGA-CZ-4854       TCGA-CZ-4857 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-CZ-4858       TCGA-CZ-5453       TCGA-CZ-5454       TCGA-CZ-5455 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-CZ-5457       TCGA-CZ-5459       TCGA-CZ-5462       TCGA-CZ-5463 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-CZ-5466       TCGA-CZ-5467       TCGA-CZ-5469       TCGA-CZ-5470 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-CZ-5989       TCGA-DV-5565       TCGA-DV-5566       TCGA-DV-5569 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-DW-5560       TCGA-DW-5561       TCGA-DW-7834       TCGA-DW-7837 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-DW-7838       TCGA-DW-7839       TCGA-DW-7840       TCGA-DW-7842 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-DZ-6131       TCGA-DZ-6132       TCGA-DZ-6134       TCGA-DZ-6135 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-EU-5904       TCGA-EV-5901       TCGA-EV-5902       TCGA-EV-5903 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-F9-A4JJ       TCGA-G7-6789       TCGA-G7-6790       TCGA-G7-6792 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-G7-6793       TCGA-G7-6795       TCGA-G7-6796       TCGA-G7-7501 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-G7-7502       TCGA-G7-A4TM       TCGA-GL-6846       TCGA-GL-7773 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-GL-7966       TCGA-GL-8500       TCGA-GL-A4EM       TCGA-GL-A59T 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-HE-7128       TCGA-HE-7130       TCGA-HE-A5NJ       TCGA-IA-A40U 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-IA-A40X       TCGA-IA-A40Y       TCGA-IZ-8195       TCGA-IZ-8196 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-IZ-A6M9       TCGA-J7-6720       TCGA-J7-8537       TCGA-KL-8323 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-KL-8324       TCGA-KL-8327       TCGA-KL-8328       TCGA-KL-8331 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-KL-8332       TCGA-KL-8333       TCGA-KL-8334       TCGA-KL-8335 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-KL-8336       TCGA-KL-8338       TCGA-KL-8339       TCGA-KL-8340 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-KL-8341       TCGA-KL-8342       TCGA-KL-8343       TCGA-KL-8344 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-KL-8345       TCGA-KM-8438       TCGA-KM-8439       TCGA-KM-8441 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-KM-8442       TCGA-KM-8639       TCGA-KN-8418       TCGA-KN-8419 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-KN-8422       TCGA-KN-8423       TCGA-KN-8424       TCGA-KN-8426 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-KN-8427       TCGA-KN-8428       TCGA-KN-8429       TCGA-KN-8430 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-KN-8431       TCGA-KN-8432       TCGA-KN-8433       TCGA-KN-8434 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-KN-8436       TCGA-KN-8437       TCGA-KO-8404       TCGA-KO-8405 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-KO-8408       TCGA-KO-8409       TCGA-KO-8410       TCGA-KO-8413 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-KO-8415       TCGA-KO-8416       TCGA-KO-8417       TCGA-KV-A6GD 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-KV-A6GE       TCGA-P4-A5E6       TCGA-P4-A5E7       TCGA-P4-A5E8 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-P4-A5EA       TCGA-PJ-A5Z8       TCGA-PJ-A5Z9       TCGA-Q2-A5QZ 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SFMBT1 MUTATED        0      1      0      0      0
  SFMBT1 WILD-TYPE     26     42     62    100     46
D59V10, multiclass
[1] "Remove cluster labels:" "SFMBT1 MUTATED"        
clus
  SFMBT1 MUTATED SFMBT1 WILD-TYPE 
               1              276 
      TCGA-A3-3317       TCGA-A3-3358       TCGA-A3-3387       TCGA-A4-7286 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-A4-7287       TCGA-A4-7288       TCGA-A4-7585       TCGA-A4-7734 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-A4-7828       TCGA-A4-7915       TCGA-A4-7996       TCGA-A4-7997 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-A4-8098       TCGA-A4-8310       TCGA-A4-8312       TCGA-A4-8515 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-A4-8517       TCGA-A4-8518       TCGA-A4-8630       TCGA-A4-A57E 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-A4-A5XZ       TCGA-A4-A5Y0       TCGA-A4-A5Y1       TCGA-AK-3440 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-AK-3458       TCGA-AK-3465       TCGA-AL-3466       TCGA-AL-3472 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-AL-3473       TCGA-AL-7173       TCGA-AT-A5NU       TCGA-B0-4700 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-B0-4706       TCGA-B0-4710       TCGA-B0-4712       TCGA-B0-4810 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-B0-4811       TCGA-B0-4836       TCGA-B0-4837       TCGA-B0-4852 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-B0-5080       TCGA-B0-5085       TCGA-B0-5088       TCGA-B0-5399 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-B0-5691       TCGA-B0-5692       TCGA-B0-5693       TCGA-B0-5694 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-B0-5695       TCGA-B0-5696       TCGA-B0-5699       TCGA-B0-5702 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-B0-5705       TCGA-B0-5709       TCGA-B1-5398       TCGA-B1-A47N 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-B1-A654       TCGA-B1-A656       TCGA-B1-A657       TCGA-B2-3923 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-B2-3924       TCGA-B2-5633       TCGA-B2-5635       TCGA-B3-3925 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-B3-4104       TCGA-B3-8121       TCGA-B4-5377       TCGA-B4-5836 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-B8-4621       TCGA-B8-5545       TCGA-B8-5550       TCGA-B8-5551 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-B8-5552       TCGA-B8-5553       TCGA-B9-4115       TCGA-B9-4117 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-B9-5156       TCGA-B9-A44B       TCGA-B9-A5W9       TCGA-B9-A69E 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-BP-4173       TCGA-BP-4340       TCGA-BP-4761       TCGA-BP-4770 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-BP-4787       TCGA-BP-4789       TCGA-BP-4790       TCGA-BP-4804 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-BP-4807       TCGA-BP-4961       TCGA-BP-4967       TCGA-BP-4968 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-BP-4970       TCGA-BP-4974       TCGA-BP-4976       TCGA-BP-4981 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-BP-4982       TCGA-BP-4985       TCGA-BP-4988       TCGA-BP-4989 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-BP-4992       TCGA-BP-4995       TCGA-BP-4998       TCGA-BP-5001 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-BP-5008       TCGA-BP-5009       TCGA-BQ-5876       TCGA-BQ-5877 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-BQ-5878       TCGA-BQ-5879       TCGA-BQ-5880       TCGA-BQ-5881 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-BQ-5882       TCGA-BQ-5883       TCGA-BQ-5884       TCGA-BQ-5886 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-BQ-5887       TCGA-BQ-5888       TCGA-BQ-5889       TCGA-BQ-5890 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-BQ-5891       TCGA-BQ-5892       TCGA-BQ-5893       TCGA-BQ-5894 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-BQ-7044       TCGA-BQ-7045       TCGA-BQ-7046       TCGA-BQ-7048 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-BQ-7050       TCGA-BQ-7051       TCGA-BQ-7053       TCGA-BQ-7055 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-BQ-7058       TCGA-BQ-7059       TCGA-BQ-7060       TCGA-BQ-7061 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-BQ-7062       TCGA-CJ-4870       TCGA-CJ-4875       TCGA-CJ-4876 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-CJ-4878       TCGA-CJ-4881       TCGA-CJ-4887       TCGA-CJ-4889 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-CJ-4890       TCGA-CJ-4895       TCGA-CJ-4900       TCGA-CJ-5671 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-CJ-5675       TCGA-CJ-5676       TCGA-CJ-5681       TCGA-CJ-5683 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-CJ-5686       TCGA-CJ-6031       TCGA-CJ-6032       TCGA-CW-5585 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-CW-5589       TCGA-CW-6087       TCGA-CZ-4854       TCGA-CZ-4857 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-CZ-4858       TCGA-CZ-5453       TCGA-CZ-5454       TCGA-CZ-5455 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-CZ-5457       TCGA-CZ-5459       TCGA-CZ-5462       TCGA-CZ-5463 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-CZ-5466       TCGA-CZ-5467       TCGA-CZ-5469       TCGA-CZ-5470 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-CZ-5989       TCGA-DV-5565       TCGA-DV-5566       TCGA-DV-5569 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-DW-5560       TCGA-DW-5561       TCGA-DW-7834       TCGA-DW-7837 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-DW-7838       TCGA-DW-7839       TCGA-DW-7840       TCGA-DW-7842 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-DZ-6131       TCGA-DZ-6132       TCGA-DZ-6134       TCGA-DZ-6135 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-EU-5904       TCGA-EV-5901       TCGA-EV-5902       TCGA-EV-5903 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-F9-A4JJ       TCGA-G7-6789       TCGA-G7-6790       TCGA-G7-6792 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-G7-6793       TCGA-G7-6795       TCGA-G7-6796       TCGA-G7-7501 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-G7-7502       TCGA-G7-A4TM       TCGA-GL-6846       TCGA-GL-7773 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-GL-7966       TCGA-GL-8500       TCGA-GL-A4EM       TCGA-GL-A59T 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-HE-7128       TCGA-HE-7130       TCGA-HE-A5NJ       TCGA-IA-A40U 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-IA-A40X       TCGA-IA-A40Y       TCGA-IZ-8195       TCGA-IZ-8196 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-IZ-A6M9       TCGA-J7-6720       TCGA-J7-8537       TCGA-KL-8323 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-KL-8324       TCGA-KL-8327       TCGA-KL-8328       TCGA-KL-8331 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-KL-8332       TCGA-KL-8333       TCGA-KL-8334       TCGA-KL-8335 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-KL-8336       TCGA-KL-8338       TCGA-KL-8339       TCGA-KL-8340 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-KL-8341       TCGA-KL-8342       TCGA-KL-8343       TCGA-KL-8344 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-KL-8345       TCGA-KM-8438       TCGA-KM-8439       TCGA-KM-8441 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-KM-8442       TCGA-KM-8639       TCGA-KN-8418       TCGA-KN-8419 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-KN-8422       TCGA-KN-8423       TCGA-KN-8424       TCGA-KN-8426 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-KN-8427       TCGA-KN-8428       TCGA-KN-8429       TCGA-KN-8430 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-KN-8431       TCGA-KN-8432       TCGA-KN-8433       TCGA-KN-8434 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-KN-8436       TCGA-KN-8437       TCGA-KO-8404       TCGA-KO-8405 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-KO-8408       TCGA-KO-8409       TCGA-KO-8410       TCGA-KO-8413 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-KO-8415       TCGA-KO-8416       TCGA-KO-8417       TCGA-KV-A6GD 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-KV-A6GE       TCGA-P4-A5E6       TCGA-P4-A5E7       TCGA-P4-A5E8 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 
      TCGA-P4-A5EA       TCGA-PJ-A5Z8       TCGA-PJ-A5Z9       TCGA-Q2-A5QZ 
"SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" "SFMBT1 WILD-TYPE" 

Clustering(60) Variable = SLC16A1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC16A1 MUTATED        0      0      0      0
  SLC16A1 WILD-TYPE     21     17      9     14
D60V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC16A1 MUTATED        0      0      0      0      0
  SLC16A1 WILD-TYPE     11     17     14     10      9
D60V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC16A1 MUTATED        1      1      1
  SLC16A1 WILD-TYPE    179    241    242
D60V3, multiclass
        clus
vv       SLC16A1 MUTATED SLC16A1 WILD-TYPE
  CLUS_1               1               179
  CLUS_2               1               241
  CLUS_3               1               242
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC16A1 MUTATED        0      2      1
  SLC16A1 WILD-TYPE    103    253    118
D60V4, multiclass
        clus
vv       SLC16A1 MUTATED SLC16A1 WILD-TYPE
  CLUS_1               0               103
  CLUS_2               2               253
  CLUS_3               1               118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC16A1 MUTATED        0      1      1      1
  SLC16A1 WILD-TYPE     98    173    244    148
D60V5, multiclass
        clus
vv       SLC16A1 MUTATED SLC16A1 WILD-TYPE
  CLUS_1               0                98
  CLUS_2               1               173
  CLUS_3               1               244
  CLUS_4               1               148
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SLC16A1 MUTATED        0      0      1      1      0      1
  SLC16A1 WILD-TYPE     80     90    176    137     90     90
D60V6, multiclass
        clus
vv       SLC16A1 MUTATED SLC16A1 WILD-TYPE
  CLUS_1               0                80
  CLUS_2               0                90
  CLUS_3               1               176
  CLUS_4               1               137
  CLUS_5               0                90
  CLUS_6               1                90
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC16A1 MUTATED        1      0      2
  SLC16A1 WILD-TYPE    213    148    294
D60V7, multiclass
        clus
vv       SLC16A1 MUTATED SLC16A1 WILD-TYPE
  CLUS_1               1               213
  CLUS_2               0               148
  CLUS_3               2               294
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC16A1 MUTATED        0      2      1
  SLC16A1 WILD-TYPE     72    474    109
D60V8, multiclass
        clus
vv       SLC16A1 MUTATED SLC16A1 WILD-TYPE
  CLUS_1               0                72
  CLUS_2               2               474
  CLUS_3               1               109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC16A1 MUTATED        0      0      1      1
  SLC16A1 WILD-TYPE     76     60     41     98
D60V9, multiclass
[1] "Remove cluster labels:" "SLC16A1 MUTATED"       
clus
  SLC16A1 MUTATED SLC16A1 WILD-TYPE 
                2               275 
       TCGA-A3-3317        TCGA-A3-3358        TCGA-A3-3387        TCGA-A4-7286 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-A4-7287        TCGA-A4-7288        TCGA-A4-7585        TCGA-A4-7734 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-A4-7828        TCGA-A4-7915        TCGA-A4-7996        TCGA-A4-7997 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-A4-8098        TCGA-A4-8310        TCGA-A4-8312        TCGA-A4-8515 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-A4-8517        TCGA-A4-8518        TCGA-A4-8630        TCGA-A4-A57E 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-A4-A5XZ        TCGA-A4-A5Y0        TCGA-A4-A5Y1        TCGA-AK-3440 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-AK-3458        TCGA-AK-3465        TCGA-AL-3466        TCGA-AL-3472 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-AL-3473        TCGA-AL-7173        TCGA-AT-A5NU        TCGA-B0-4700 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-B0-4706        TCGA-B0-4710        TCGA-B0-4712        TCGA-B0-4810 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-B0-4811        TCGA-B0-4836        TCGA-B0-4837        TCGA-B0-4852 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-B0-5080        TCGA-B0-5085        TCGA-B0-5088        TCGA-B0-5399 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-B0-5691        TCGA-B0-5692        TCGA-B0-5693        TCGA-B0-5694 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-B0-5695        TCGA-B0-5696        TCGA-B0-5699        TCGA-B0-5702 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-B0-5705        TCGA-B0-5709        TCGA-B1-5398        TCGA-B1-A47N 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-B1-A654        TCGA-B1-A656        TCGA-B1-A657        TCGA-B2-3923 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-B2-3924        TCGA-B2-5633        TCGA-B2-5635        TCGA-B3-3925 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-B3-4104        TCGA-B4-5377        TCGA-B4-5836        TCGA-B8-4621 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-B8-5545        TCGA-B8-5550        TCGA-B8-5551        TCGA-B8-5552 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-B8-5553        TCGA-B9-4115        TCGA-B9-4117        TCGA-B9-5156 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-B9-A44B        TCGA-B9-A5W9        TCGA-B9-A69E        TCGA-BP-4173 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-BP-4340        TCGA-BP-4761        TCGA-BP-4770        TCGA-BP-4787 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-BP-4789        TCGA-BP-4790        TCGA-BP-4804        TCGA-BP-4807 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-BP-4961        TCGA-BP-4967        TCGA-BP-4968        TCGA-BP-4970 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-BP-4974        TCGA-BP-4976        TCGA-BP-4981        TCGA-BP-4982 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-BP-4985        TCGA-BP-4988        TCGA-BP-4989        TCGA-BP-4992 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-BP-4995        TCGA-BP-4998        TCGA-BP-5001        TCGA-BP-5008 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-BP-5009        TCGA-BQ-5876        TCGA-BQ-5877        TCGA-BQ-5878 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-BQ-5879        TCGA-BQ-5880        TCGA-BQ-5881        TCGA-BQ-5882 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-BQ-5883        TCGA-BQ-5884        TCGA-BQ-5886        TCGA-BQ-5887 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-BQ-5888        TCGA-BQ-5889        TCGA-BQ-5890        TCGA-BQ-5891 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-BQ-5892        TCGA-BQ-5893        TCGA-BQ-5894        TCGA-BQ-7044 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-BQ-7045        TCGA-BQ-7046        TCGA-BQ-7048        TCGA-BQ-7050 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-BQ-7051        TCGA-BQ-7053        TCGA-BQ-7055        TCGA-BQ-7058 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-BQ-7059        TCGA-BQ-7060        TCGA-BQ-7061        TCGA-BQ-7062 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-CJ-4870        TCGA-CJ-4875        TCGA-CJ-4876        TCGA-CJ-4878 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-CJ-4881        TCGA-CJ-4887        TCGA-CJ-4889        TCGA-CJ-4890 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-CJ-4895        TCGA-CJ-4900        TCGA-CJ-5671        TCGA-CJ-5675 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-CJ-5681        TCGA-CJ-5683        TCGA-CJ-5686        TCGA-CJ-6031 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-CJ-6032        TCGA-CW-5585        TCGA-CW-5589        TCGA-CW-6087 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-CZ-4854        TCGA-CZ-4857        TCGA-CZ-4858        TCGA-CZ-5453 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-CZ-5454        TCGA-CZ-5455        TCGA-CZ-5457        TCGA-CZ-5459 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-CZ-5462        TCGA-CZ-5463        TCGA-CZ-5466        TCGA-CZ-5467 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-CZ-5469        TCGA-CZ-5470        TCGA-CZ-5989        TCGA-DV-5565 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-DV-5566        TCGA-DV-5569        TCGA-DW-5560        TCGA-DW-5561 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-DW-7834        TCGA-DW-7837        TCGA-DW-7838        TCGA-DW-7839 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-DW-7840        TCGA-DW-7842        TCGA-DZ-6131        TCGA-DZ-6132 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-DZ-6133        TCGA-DZ-6134        TCGA-DZ-6135        TCGA-EU-5904 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-EV-5901        TCGA-EV-5902        TCGA-EV-5903        TCGA-F9-A4JJ 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-G7-6789        TCGA-G7-6790        TCGA-G7-6792        TCGA-G7-6793 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-G7-6795        TCGA-G7-6796        TCGA-G7-7501        TCGA-G7-7502 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-G7-A4TM        TCGA-GL-6846        TCGA-GL-7773        TCGA-GL-7966 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-GL-8500        TCGA-GL-A4EM        TCGA-GL-A59T        TCGA-HE-7128 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-HE-7130        TCGA-HE-A5NJ        TCGA-IA-A40U        TCGA-IA-A40X 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-IA-A40Y        TCGA-IZ-8195        TCGA-IZ-8196        TCGA-IZ-A6M9 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-J7-6720        TCGA-J7-8537        TCGA-KL-8323        TCGA-KL-8324 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-KL-8327        TCGA-KL-8328        TCGA-KL-8331        TCGA-KL-8332 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-KL-8333        TCGA-KL-8334        TCGA-KL-8335        TCGA-KL-8336 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-KL-8338        TCGA-KL-8339        TCGA-KL-8340        TCGA-KL-8341 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-KL-8342        TCGA-KL-8343        TCGA-KL-8344        TCGA-KL-8345 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-KM-8438        TCGA-KM-8439        TCGA-KM-8441        TCGA-KM-8442 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-KM-8639        TCGA-KN-8418        TCGA-KN-8419        TCGA-KN-8422 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-KN-8423        TCGA-KN-8424        TCGA-KN-8426        TCGA-KN-8427 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-KN-8428        TCGA-KN-8429        TCGA-KN-8430        TCGA-KN-8431 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-KN-8432        TCGA-KN-8433        TCGA-KN-8434        TCGA-KN-8436 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-KN-8437        TCGA-KO-8404        TCGA-KO-8405        TCGA-KO-8408 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-KO-8409        TCGA-KO-8410        TCGA-KO-8413        TCGA-KO-8415 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-KO-8416        TCGA-KO-8417        TCGA-KV-A6GD        TCGA-KV-A6GE 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-P4-A5E6        TCGA-P4-A5E7        TCGA-P4-A5E8        TCGA-P4-A5EA 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-PJ-A5Z8        TCGA-PJ-A5Z9        TCGA-Q2-A5QZ 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC16A1 MUTATED        1      0      0      1      0
  SLC16A1 WILD-TYPE     25     43     62     99     46
D60V10, multiclass
[1] "Remove cluster labels:" "SLC16A1 MUTATED"       
clus
  SLC16A1 MUTATED SLC16A1 WILD-TYPE 
                2               275 
       TCGA-A3-3317        TCGA-A3-3358        TCGA-A3-3387        TCGA-A4-7286 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-A4-7287        TCGA-A4-7288        TCGA-A4-7585        TCGA-A4-7734 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-A4-7828        TCGA-A4-7915        TCGA-A4-7996        TCGA-A4-7997 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-A4-8098        TCGA-A4-8310        TCGA-A4-8312        TCGA-A4-8515 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-A4-8517        TCGA-A4-8518        TCGA-A4-8630        TCGA-A4-A57E 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-A4-A5XZ        TCGA-A4-A5Y0        TCGA-A4-A5Y1        TCGA-AK-3440 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-AK-3458        TCGA-AK-3465        TCGA-AL-3466        TCGA-AL-3472 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-AL-3473        TCGA-AL-7173        TCGA-AT-A5NU        TCGA-B0-4700 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-B0-4706        TCGA-B0-4710        TCGA-B0-4712        TCGA-B0-4810 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-B0-4811        TCGA-B0-4836        TCGA-B0-4837        TCGA-B0-4852 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-B0-5080        TCGA-B0-5085        TCGA-B0-5088        TCGA-B0-5399 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-B0-5691        TCGA-B0-5692        TCGA-B0-5693        TCGA-B0-5694 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-B0-5695        TCGA-B0-5696        TCGA-B0-5699        TCGA-B0-5702 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-B0-5705        TCGA-B0-5709        TCGA-B1-5398        TCGA-B1-A47N 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-B1-A654        TCGA-B1-A656        TCGA-B1-A657        TCGA-B2-3923 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-B2-3924        TCGA-B2-5633        TCGA-B2-5635        TCGA-B3-3925 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-B3-4104        TCGA-B4-5377        TCGA-B4-5836        TCGA-B8-4621 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-B8-5545        TCGA-B8-5550        TCGA-B8-5551        TCGA-B8-5552 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-B8-5553        TCGA-B9-4115        TCGA-B9-4117        TCGA-B9-5156 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-B9-A44B        TCGA-B9-A5W9        TCGA-B9-A69E        TCGA-BP-4173 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-BP-4340        TCGA-BP-4761        TCGA-BP-4770        TCGA-BP-4787 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-BP-4789        TCGA-BP-4790        TCGA-BP-4804        TCGA-BP-4807 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-BP-4961        TCGA-BP-4967        TCGA-BP-4968        TCGA-BP-4970 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-BP-4974        TCGA-BP-4976        TCGA-BP-4981        TCGA-BP-4982 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-BP-4985        TCGA-BP-4988        TCGA-BP-4989        TCGA-BP-4992 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-BP-4995        TCGA-BP-4998        TCGA-BP-5001        TCGA-BP-5008 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-BP-5009        TCGA-BQ-5876        TCGA-BQ-5877        TCGA-BQ-5878 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-BQ-5879        TCGA-BQ-5880        TCGA-BQ-5881        TCGA-BQ-5882 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-BQ-5883        TCGA-BQ-5884        TCGA-BQ-5886        TCGA-BQ-5887 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-BQ-5888        TCGA-BQ-5889        TCGA-BQ-5890        TCGA-BQ-5891 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-BQ-5892        TCGA-BQ-5893        TCGA-BQ-5894        TCGA-BQ-7044 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-BQ-7045        TCGA-BQ-7046        TCGA-BQ-7048        TCGA-BQ-7050 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-BQ-7051        TCGA-BQ-7053        TCGA-BQ-7055        TCGA-BQ-7058 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-BQ-7059        TCGA-BQ-7060        TCGA-BQ-7061        TCGA-BQ-7062 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-CJ-4870        TCGA-CJ-4875        TCGA-CJ-4876        TCGA-CJ-4878 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-CJ-4881        TCGA-CJ-4887        TCGA-CJ-4889        TCGA-CJ-4890 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-CJ-4895        TCGA-CJ-4900        TCGA-CJ-5671        TCGA-CJ-5675 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-CJ-5681        TCGA-CJ-5683        TCGA-CJ-5686        TCGA-CJ-6031 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-CJ-6032        TCGA-CW-5585        TCGA-CW-5589        TCGA-CW-6087 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-CZ-4854        TCGA-CZ-4857        TCGA-CZ-4858        TCGA-CZ-5453 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-CZ-5454        TCGA-CZ-5455        TCGA-CZ-5457        TCGA-CZ-5459 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-CZ-5462        TCGA-CZ-5463        TCGA-CZ-5466        TCGA-CZ-5467 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-CZ-5469        TCGA-CZ-5470        TCGA-CZ-5989        TCGA-DV-5565 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-DV-5566        TCGA-DV-5569        TCGA-DW-5560        TCGA-DW-5561 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-DW-7834        TCGA-DW-7837        TCGA-DW-7838        TCGA-DW-7839 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-DW-7840        TCGA-DW-7842        TCGA-DZ-6131        TCGA-DZ-6132 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-DZ-6133        TCGA-DZ-6134        TCGA-DZ-6135        TCGA-EU-5904 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-EV-5901        TCGA-EV-5902        TCGA-EV-5903        TCGA-F9-A4JJ 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-G7-6789        TCGA-G7-6790        TCGA-G7-6792        TCGA-G7-6793 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-G7-6795        TCGA-G7-6796        TCGA-G7-7501        TCGA-G7-7502 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-G7-A4TM        TCGA-GL-6846        TCGA-GL-7773        TCGA-GL-7966 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-GL-8500        TCGA-GL-A4EM        TCGA-GL-A59T        TCGA-HE-7128 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-HE-7130        TCGA-HE-A5NJ        TCGA-IA-A40U        TCGA-IA-A40X 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-IA-A40Y        TCGA-IZ-8195        TCGA-IZ-8196        TCGA-IZ-A6M9 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-J7-6720        TCGA-J7-8537        TCGA-KL-8323        TCGA-KL-8324 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-KL-8327        TCGA-KL-8328        TCGA-KL-8331        TCGA-KL-8332 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-KL-8333        TCGA-KL-8334        TCGA-KL-8335        TCGA-KL-8336 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-KL-8338        TCGA-KL-8339        TCGA-KL-8340        TCGA-KL-8341 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-KL-8342        TCGA-KL-8343        TCGA-KL-8344        TCGA-KL-8345 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-KM-8438        TCGA-KM-8439        TCGA-KM-8441        TCGA-KM-8442 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-KM-8639        TCGA-KN-8418        TCGA-KN-8419        TCGA-KN-8422 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-KN-8423        TCGA-KN-8424        TCGA-KN-8426        TCGA-KN-8427 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-KN-8428        TCGA-KN-8429        TCGA-KN-8430        TCGA-KN-8431 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-KN-8432        TCGA-KN-8433        TCGA-KN-8434        TCGA-KN-8436 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-KN-8437        TCGA-KO-8404        TCGA-KO-8405        TCGA-KO-8408 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-KO-8409        TCGA-KO-8410        TCGA-KO-8413        TCGA-KO-8415 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-KO-8416        TCGA-KO-8417        TCGA-KV-A6GD        TCGA-KV-A6GE 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-P4-A5E6        TCGA-P4-A5E7        TCGA-P4-A5E8        TCGA-P4-A5EA 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-PJ-A5Z8        TCGA-PJ-A5Z9        TCGA-Q2-A5QZ 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 

Clustering(61) Variable = PAM MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAM MUTATED        0      0      0      0
  PAM WILD-TYPE     21     17      9     14
D61V1, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PAM MUTATED        0      0      0      0      0
  PAM WILD-TYPE     11     17     14     10      9
D61V2, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  PAM MUTATED        3      0      0
  PAM WILD-TYPE    177    242    243
D61V3, multiclass
        clus
vv       PAM MUTATED PAM WILD-TYPE
  CLUS_1           3           177
  CLUS_2           0           242
  CLUS_3           0           243
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  PAM MUTATED        0      0      4
  PAM WILD-TYPE    103    255    115
D61V4, multiclass
        clus
vv       PAM MUTATED PAM WILD-TYPE
  CLUS_1           0           103
  CLUS_2           0           255
  CLUS_3           4           115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAM MUTATED        0      0      0      4
  PAM WILD-TYPE     98    174    245    145
D61V5, multiclass
        clus
vv       PAM MUTATED PAM WILD-TYPE
  CLUS_1           0            98
  CLUS_2           0           174
  CLUS_3           0           245
  CLUS_4           4           145
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PAM MUTATED        0      1      0      0      0      3
  PAM WILD-TYPE     80     89    177    138     90     88
D61V6, multiclass
        clus
vv       PAM MUTATED PAM WILD-TYPE
  CLUS_1           0            80
  CLUS_2           1            89
  CLUS_3           0           177
  CLUS_4           0           138
  CLUS_5           0            90
  CLUS_6           3            88
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  PAM MUTATED        4      0      0
  PAM WILD-TYPE    210    148    296
D61V7, multiclass
        clus
vv       PAM MUTATED PAM WILD-TYPE
  CLUS_1           4           210
  CLUS_2           0           148
  CLUS_3           0           296
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  PAM MUTATED        0      0      4
  PAM WILD-TYPE     72    476    106
D61V8, multiclass
        clus
vv       PAM MUTATED PAM WILD-TYPE
  CLUS_1           0            72
  CLUS_2           0           476
  CLUS_3           4           106
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAM MUTATED        2      0      0      0
  PAM WILD-TYPE     74     60     42     99
D61V9, multiclass
[1] "Remove cluster labels:" "PAM MUTATED"           
clus
  PAM MUTATED PAM WILD-TYPE 
            2           275 
   TCGA-A3-3317    TCGA-A3-3358    TCGA-A3-3387    TCGA-A4-7286    TCGA-A4-7287 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-A4-7288    TCGA-A4-7585    TCGA-A4-7734    TCGA-A4-7828    TCGA-A4-7915 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-A4-7996    TCGA-A4-7997    TCGA-A4-8098    TCGA-A4-8310    TCGA-A4-8312 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-A4-8515    TCGA-A4-8517    TCGA-A4-8518    TCGA-A4-8630    TCGA-A4-A57E 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-A4-A5XZ    TCGA-A4-A5Y0    TCGA-A4-A5Y1    TCGA-AK-3440    TCGA-AK-3458 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-AK-3465    TCGA-AL-3466    TCGA-AL-3472    TCGA-AL-3473    TCGA-AL-7173 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-AT-A5NU    TCGA-B0-4700    TCGA-B0-4706    TCGA-B0-4710    TCGA-B0-4712 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-B0-4810    TCGA-B0-4811    TCGA-B0-4836    TCGA-B0-4837    TCGA-B0-4852 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-B0-5080    TCGA-B0-5085    TCGA-B0-5088    TCGA-B0-5399    TCGA-B0-5691 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-B0-5692    TCGA-B0-5693    TCGA-B0-5694    TCGA-B0-5695    TCGA-B0-5696 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-B0-5699    TCGA-B0-5702    TCGA-B0-5705    TCGA-B0-5709    TCGA-B1-5398 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-B1-A47N    TCGA-B1-A654    TCGA-B1-A656    TCGA-B1-A657    TCGA-B2-3923 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-B2-3924    TCGA-B2-5633    TCGA-B2-5635    TCGA-B3-3925    TCGA-B3-4104 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-B3-8121    TCGA-B4-5377    TCGA-B4-5836    TCGA-B8-4621    TCGA-B8-5545 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-B8-5550    TCGA-B8-5551    TCGA-B8-5552    TCGA-B8-5553    TCGA-B9-4115 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-B9-4117    TCGA-B9-5156    TCGA-B9-A44B    TCGA-B9-A5W9    TCGA-B9-A69E 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-BP-4173    TCGA-BP-4340    TCGA-BP-4761    TCGA-BP-4770    TCGA-BP-4787 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-BP-4789    TCGA-BP-4790    TCGA-BP-4804    TCGA-BP-4807    TCGA-BP-4961 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-BP-4967    TCGA-BP-4968    TCGA-BP-4970    TCGA-BP-4974    TCGA-BP-4976 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-BP-4981    TCGA-BP-4982    TCGA-BP-4985    TCGA-BP-4988    TCGA-BP-4989 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-BP-4992    TCGA-BP-4995    TCGA-BP-4998    TCGA-BP-5001    TCGA-BP-5008 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-BP-5009    TCGA-BQ-5876    TCGA-BQ-5877    TCGA-BQ-5878    TCGA-BQ-5879 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-BQ-5880    TCGA-BQ-5881    TCGA-BQ-5882    TCGA-BQ-5883    TCGA-BQ-5884 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-BQ-5886    TCGA-BQ-5887    TCGA-BQ-5888    TCGA-BQ-5889    TCGA-BQ-5890 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-BQ-5891    TCGA-BQ-5892    TCGA-BQ-5893    TCGA-BQ-5894    TCGA-BQ-7044 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-BQ-7045    TCGA-BQ-7046    TCGA-BQ-7048    TCGA-BQ-7050    TCGA-BQ-7051 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-BQ-7053    TCGA-BQ-7055    TCGA-BQ-7058    TCGA-BQ-7059    TCGA-BQ-7060 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-BQ-7061    TCGA-BQ-7062    TCGA-CJ-4870    TCGA-CJ-4875    TCGA-CJ-4876 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-CJ-4878    TCGA-CJ-4881    TCGA-CJ-4887    TCGA-CJ-4889    TCGA-CJ-4890 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-CJ-4895    TCGA-CJ-4900    TCGA-CJ-5671    TCGA-CJ-5675    TCGA-CJ-5676 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-CJ-5681    TCGA-CJ-5683    TCGA-CJ-5686    TCGA-CJ-6031    TCGA-CJ-6032 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-CW-5585    TCGA-CW-5589    TCGA-CW-6087    TCGA-CZ-4854    TCGA-CZ-4857 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-CZ-4858    TCGA-CZ-5453    TCGA-CZ-5454    TCGA-CZ-5455    TCGA-CZ-5457 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-CZ-5459    TCGA-CZ-5462    TCGA-CZ-5463    TCGA-CZ-5466    TCGA-CZ-5467 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-CZ-5469    TCGA-CZ-5470    TCGA-CZ-5989    TCGA-DV-5565    TCGA-DV-5566 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-DV-5569    TCGA-DW-5560    TCGA-DW-5561    TCGA-DW-7834    TCGA-DW-7837 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-DW-7838    TCGA-DW-7839    TCGA-DW-7840    TCGA-DW-7842    TCGA-DZ-6131 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-DZ-6132    TCGA-DZ-6133    TCGA-DZ-6134    TCGA-DZ-6135    TCGA-EU-5904 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-EV-5901    TCGA-EV-5902    TCGA-EV-5903    TCGA-F9-A4JJ    TCGA-G7-6789 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-G7-6790    TCGA-G7-6792    TCGA-G7-6793    TCGA-G7-6795    TCGA-G7-6796 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-G7-7501    TCGA-G7-7502    TCGA-G7-A4TM    TCGA-GL-6846    TCGA-GL-7773 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-GL-7966    TCGA-GL-8500    TCGA-GL-A4EM    TCGA-GL-A59T    TCGA-HE-7128 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-HE-7130    TCGA-HE-A5NJ    TCGA-IA-A40X    TCGA-IA-A40Y    TCGA-IZ-8195 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-IZ-8196    TCGA-IZ-A6M9    TCGA-J7-6720    TCGA-J7-8537    TCGA-KL-8323 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-KL-8324    TCGA-KL-8327    TCGA-KL-8328    TCGA-KL-8331    TCGA-KL-8332 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-KL-8333    TCGA-KL-8334    TCGA-KL-8335    TCGA-KL-8336    TCGA-KL-8338 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-KL-8339    TCGA-KL-8340    TCGA-KL-8341    TCGA-KL-8342    TCGA-KL-8343 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-KL-8344    TCGA-KL-8345    TCGA-KM-8438    TCGA-KM-8439    TCGA-KM-8441 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-KM-8442    TCGA-KM-8639    TCGA-KN-8418    TCGA-KN-8419    TCGA-KN-8422 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-KN-8423    TCGA-KN-8424    TCGA-KN-8426    TCGA-KN-8427    TCGA-KN-8428 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-KN-8429    TCGA-KN-8430    TCGA-KN-8431    TCGA-KN-8432    TCGA-KN-8433 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-KN-8434    TCGA-KN-8436    TCGA-KN-8437    TCGA-KO-8404    TCGA-KO-8405 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-KO-8408    TCGA-KO-8409    TCGA-KO-8410    TCGA-KO-8413    TCGA-KO-8415 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-KO-8416    TCGA-KO-8417    TCGA-KV-A6GD    TCGA-KV-A6GE    TCGA-P4-A5E7 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-P4-A5E8    TCGA-P4-A5EA    TCGA-PJ-A5Z8    TCGA-PJ-A5Z9    TCGA-Q2-A5QZ 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PAM MUTATED        0      2      0      0      0
  PAM WILD-TYPE     26     41     62    100     46
D61V10, multiclass
[1] "Remove cluster labels:" "PAM MUTATED"           
clus
  PAM MUTATED PAM WILD-TYPE 
            2           275 
   TCGA-A3-3317    TCGA-A3-3358    TCGA-A3-3387    TCGA-A4-7286    TCGA-A4-7287 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-A4-7288    TCGA-A4-7585    TCGA-A4-7734    TCGA-A4-7828    TCGA-A4-7915 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-A4-7996    TCGA-A4-7997    TCGA-A4-8098    TCGA-A4-8310    TCGA-A4-8312 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-A4-8515    TCGA-A4-8517    TCGA-A4-8518    TCGA-A4-8630    TCGA-A4-A57E 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-A4-A5XZ    TCGA-A4-A5Y0    TCGA-A4-A5Y1    TCGA-AK-3440    TCGA-AK-3458 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-AK-3465    TCGA-AL-3466    TCGA-AL-3472    TCGA-AL-3473    TCGA-AL-7173 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-AT-A5NU    TCGA-B0-4700    TCGA-B0-4706    TCGA-B0-4710    TCGA-B0-4712 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-B0-4810    TCGA-B0-4811    TCGA-B0-4836    TCGA-B0-4837    TCGA-B0-4852 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-B0-5080    TCGA-B0-5085    TCGA-B0-5088    TCGA-B0-5399    TCGA-B0-5691 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-B0-5692    TCGA-B0-5693    TCGA-B0-5694    TCGA-B0-5695    TCGA-B0-5696 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-B0-5699    TCGA-B0-5702    TCGA-B0-5705    TCGA-B0-5709    TCGA-B1-5398 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-B1-A47N    TCGA-B1-A654    TCGA-B1-A656    TCGA-B1-A657    TCGA-B2-3923 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-B2-3924    TCGA-B2-5633    TCGA-B2-5635    TCGA-B3-3925    TCGA-B3-4104 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-B3-8121    TCGA-B4-5377    TCGA-B4-5836    TCGA-B8-4621    TCGA-B8-5545 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-B8-5550    TCGA-B8-5551    TCGA-B8-5552    TCGA-B8-5553    TCGA-B9-4115 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-B9-4117    TCGA-B9-5156    TCGA-B9-A44B    TCGA-B9-A5W9    TCGA-B9-A69E 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-BP-4173    TCGA-BP-4340    TCGA-BP-4761    TCGA-BP-4770    TCGA-BP-4787 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-BP-4789    TCGA-BP-4790    TCGA-BP-4804    TCGA-BP-4807    TCGA-BP-4961 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-BP-4967    TCGA-BP-4968    TCGA-BP-4970    TCGA-BP-4974    TCGA-BP-4976 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-BP-4981    TCGA-BP-4982    TCGA-BP-4985    TCGA-BP-4988    TCGA-BP-4989 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-BP-4992    TCGA-BP-4995    TCGA-BP-4998    TCGA-BP-5001    TCGA-BP-5008 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-BP-5009    TCGA-BQ-5876    TCGA-BQ-5877    TCGA-BQ-5878    TCGA-BQ-5879 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-BQ-5880    TCGA-BQ-5881    TCGA-BQ-5882    TCGA-BQ-5883    TCGA-BQ-5884 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-BQ-5886    TCGA-BQ-5887    TCGA-BQ-5888    TCGA-BQ-5889    TCGA-BQ-5890 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-BQ-5891    TCGA-BQ-5892    TCGA-BQ-5893    TCGA-BQ-5894    TCGA-BQ-7044 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-BQ-7045    TCGA-BQ-7046    TCGA-BQ-7048    TCGA-BQ-7050    TCGA-BQ-7051 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-BQ-7053    TCGA-BQ-7055    TCGA-BQ-7058    TCGA-BQ-7059    TCGA-BQ-7060 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-BQ-7061    TCGA-BQ-7062    TCGA-CJ-4870    TCGA-CJ-4875    TCGA-CJ-4876 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-CJ-4878    TCGA-CJ-4881    TCGA-CJ-4887    TCGA-CJ-4889    TCGA-CJ-4890 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-CJ-4895    TCGA-CJ-4900    TCGA-CJ-5671    TCGA-CJ-5675    TCGA-CJ-5676 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-CJ-5681    TCGA-CJ-5683    TCGA-CJ-5686    TCGA-CJ-6031    TCGA-CJ-6032 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-CW-5585    TCGA-CW-5589    TCGA-CW-6087    TCGA-CZ-4854    TCGA-CZ-4857 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-CZ-4858    TCGA-CZ-5453    TCGA-CZ-5454    TCGA-CZ-5455    TCGA-CZ-5457 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-CZ-5459    TCGA-CZ-5462    TCGA-CZ-5463    TCGA-CZ-5466    TCGA-CZ-5467 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-CZ-5469    TCGA-CZ-5470    TCGA-CZ-5989    TCGA-DV-5565    TCGA-DV-5566 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-DV-5569    TCGA-DW-5560    TCGA-DW-5561    TCGA-DW-7834    TCGA-DW-7837 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-DW-7838    TCGA-DW-7839    TCGA-DW-7840    TCGA-DW-7842    TCGA-DZ-6131 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-DZ-6132    TCGA-DZ-6133    TCGA-DZ-6134    TCGA-DZ-6135    TCGA-EU-5904 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-EV-5901    TCGA-EV-5902    TCGA-EV-5903    TCGA-F9-A4JJ    TCGA-G7-6789 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-G7-6790    TCGA-G7-6792    TCGA-G7-6793    TCGA-G7-6795    TCGA-G7-6796 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-G7-7501    TCGA-G7-7502    TCGA-G7-A4TM    TCGA-GL-6846    TCGA-GL-7773 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-GL-7966    TCGA-GL-8500    TCGA-GL-A4EM    TCGA-GL-A59T    TCGA-HE-7128 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-HE-7130    TCGA-HE-A5NJ    TCGA-IA-A40X    TCGA-IA-A40Y    TCGA-IZ-8195 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-IZ-8196    TCGA-IZ-A6M9    TCGA-J7-6720    TCGA-J7-8537    TCGA-KL-8323 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-KL-8324    TCGA-KL-8327    TCGA-KL-8328    TCGA-KL-8331    TCGA-KL-8332 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-KL-8333    TCGA-KL-8334    TCGA-KL-8335    TCGA-KL-8336    TCGA-KL-8338 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-KL-8339    TCGA-KL-8340    TCGA-KL-8341    TCGA-KL-8342    TCGA-KL-8343 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-KL-8344    TCGA-KL-8345    TCGA-KM-8438    TCGA-KM-8439    TCGA-KM-8441 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-KM-8442    TCGA-KM-8639    TCGA-KN-8418    TCGA-KN-8419    TCGA-KN-8422 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-KN-8423    TCGA-KN-8424    TCGA-KN-8426    TCGA-KN-8427    TCGA-KN-8428 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-KN-8429    TCGA-KN-8430    TCGA-KN-8431    TCGA-KN-8432    TCGA-KN-8433 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-KN-8434    TCGA-KN-8436    TCGA-KN-8437    TCGA-KO-8404    TCGA-KO-8405 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-KO-8408    TCGA-KO-8409    TCGA-KO-8410    TCGA-KO-8413    TCGA-KO-8415 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-KO-8416    TCGA-KO-8417    TCGA-KV-A6GD    TCGA-KV-A6GE    TCGA-P4-A5E7 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-P4-A5E8    TCGA-P4-A5EA    TCGA-PJ-A5Z8    TCGA-PJ-A5Z9    TCGA-Q2-A5QZ 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 

Clustering(62) Variable = TMCO3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMCO3 MUTATED        2      0      0      0
  TMCO3 WILD-TYPE     19     17      9     14
D62V1, multiclass
[1] "Remove cluster labels:" "TMCO3 MUTATED"         
clus
  TMCO3 MUTATED TMCO3 WILD-TYPE 
              2              59 
     TCGA-A3-3311      TCGA-A3-3316      TCGA-A3-3317      TCGA-A3-3322 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-A3-3323      TCGA-A3-3326      TCGA-A3-3347      TCGA-A3-3349 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-A3-3362      TCGA-A3-3363      TCGA-A3-3365      TCGA-A3-3374 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-A3-3380      TCGA-A3-3383      TCGA-AK-3427      TCGA-AK-3440 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-AK-3443      TCGA-AK-3453      TCGA-AK-3455      TCGA-AK-3456 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-AK-3465      TCGA-AL-3466      TCGA-AL-3467      TCGA-AL-3472 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-AL-3473      TCGA-AS-3777      TCGA-AS-3778      TCGA-B2-3923 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-B2-3924      TCGA-B2-4098      TCGA-B2-4099      TCGA-B3-3925 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-B3-3926      TCGA-B3-4103      TCGA-B3-4104      TCGA-B8-4143 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-B8-4148      TCGA-B8-4151      TCGA-B8-4154      TCGA-B8-4619 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-B8-4620      TCGA-B9-4113      TCGA-B9-4114      TCGA-B9-4115 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-B9-4116      TCGA-B9-4117      TCGA-BP-4161      TCGA-BP-4162 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-BP-4163      TCGA-BP-4164      TCGA-BP-4167      TCGA-CJ-4634 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-CJ-4636      TCGA-CJ-4637      TCGA-CJ-4638      TCGA-CJ-4639 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-CJ-4640      TCGA-CJ-4641      TCGA-CJ-4644 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMCO3 MUTATED        0      0      0      2      0
  TMCO3 WILD-TYPE     11     17     14      8      9
D62V2, multiclass
[1] "Remove cluster labels:" "TMCO3 MUTATED"         
clus
  TMCO3 MUTATED TMCO3 WILD-TYPE 
              2              59 
     TCGA-A3-3311      TCGA-A3-3316      TCGA-A3-3317      TCGA-A3-3322 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-A3-3323      TCGA-A3-3326      TCGA-A3-3347      TCGA-A3-3349 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-A3-3362      TCGA-A3-3363      TCGA-A3-3365      TCGA-A3-3374 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-A3-3380      TCGA-A3-3383      TCGA-AK-3427      TCGA-AK-3440 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-AK-3443      TCGA-AK-3453      TCGA-AK-3455      TCGA-AK-3456 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-AK-3465      TCGA-AL-3466      TCGA-AL-3467      TCGA-AL-3472 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-AL-3473      TCGA-AS-3777      TCGA-AS-3778      TCGA-B2-3923 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-B2-3924      TCGA-B2-4098      TCGA-B2-4099      TCGA-B3-3925 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-B3-3926      TCGA-B3-4103      TCGA-B3-4104      TCGA-B8-4143 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-B8-4148      TCGA-B8-4151      TCGA-B8-4154      TCGA-B8-4619 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-B8-4620      TCGA-B9-4113      TCGA-B9-4114      TCGA-B9-4115 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-B9-4116      TCGA-B9-4117      TCGA-BP-4161      TCGA-BP-4162 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-BP-4163      TCGA-BP-4164      TCGA-BP-4167      TCGA-CJ-4634 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-CJ-4636      TCGA-CJ-4637      TCGA-CJ-4638      TCGA-CJ-4639 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-CJ-4640      TCGA-CJ-4641      TCGA-CJ-4644 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TMCO3 MUTATED        2      0      5
  TMCO3 WILD-TYPE    178    242    238
D62V3, multiclass
        clus
vv       TMCO3 MUTATED TMCO3 WILD-TYPE
  CLUS_1             2             178
  CLUS_2             0             242
  CLUS_3             5             238
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TMCO3 MUTATED        0      1      2
  TMCO3 WILD-TYPE    103    254    117
D62V4, multiclass
        clus
vv       TMCO3 MUTATED TMCO3 WILD-TYPE
  CLUS_1             0             103
  CLUS_2             1             254
  CLUS_3             2             117
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMCO3 MUTATED        0      2      3      2
  TMCO3 WILD-TYPE     98    172    242    147
D62V5, multiclass
        clus
vv       TMCO3 MUTATED TMCO3 WILD-TYPE
  CLUS_1             0              98
  CLUS_2             2             172
  CLUS_3             3             242
  CLUS_4             2             147
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TMCO3 MUTATED        0      1      0      1      3      2
  TMCO3 WILD-TYPE     80     89    177    137     87     89
D62V6, multiclass
        clus
vv       TMCO3 MUTATED TMCO3 WILD-TYPE
  CLUS_1             0              80
  CLUS_2             1              89
  CLUS_3             0             177
  CLUS_4             1             137
  CLUS_5             3              87
  CLUS_6             2              89
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TMCO3 MUTATED        3      0      4
  TMCO3 WILD-TYPE    211    148    292
D62V7, multiclass
        clus
vv       TMCO3 MUTATED TMCO3 WILD-TYPE
  CLUS_1             3             211
  CLUS_2             0             148
  CLUS_3             4             292
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TMCO3 MUTATED        0      6      1
  TMCO3 WILD-TYPE     72    470    109
D62V8, multiclass
        clus
vv       TMCO3 MUTATED TMCO3 WILD-TYPE
  CLUS_1             0              72
  CLUS_2             6             470
  CLUS_3             1             109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMCO3 MUTATED        2      0      0      0
  TMCO3 WILD-TYPE     74     60     42     99
D62V9, multiclass
[1] "Remove cluster labels:" "TMCO3 MUTATED"         
clus
  TMCO3 MUTATED TMCO3 WILD-TYPE 
              2             275 
     TCGA-A3-3317      TCGA-A3-3358      TCGA-A3-3387      TCGA-A4-7286 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-A4-7287      TCGA-A4-7288      TCGA-A4-7585      TCGA-A4-7734 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-A4-7828      TCGA-A4-7915      TCGA-A4-7996      TCGA-A4-7997 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-A4-8098      TCGA-A4-8310      TCGA-A4-8312      TCGA-A4-8517 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-A4-8518      TCGA-A4-8630      TCGA-A4-A57E      TCGA-A4-A5XZ 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-A4-A5Y0      TCGA-A4-A5Y1      TCGA-AK-3440      TCGA-AK-3458 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-AK-3465      TCGA-AL-3466      TCGA-AL-3472      TCGA-AL-3473 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-AL-7173      TCGA-AT-A5NU      TCGA-B0-4700      TCGA-B0-4706 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-B0-4710      TCGA-B0-4712      TCGA-B0-4810      TCGA-B0-4811 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-B0-4836      TCGA-B0-4837      TCGA-B0-4852      TCGA-B0-5080 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-B0-5085      TCGA-B0-5088      TCGA-B0-5399      TCGA-B0-5691 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-B0-5692      TCGA-B0-5693      TCGA-B0-5694      TCGA-B0-5695 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-B0-5696      TCGA-B0-5699      TCGA-B0-5702      TCGA-B0-5705 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-B0-5709      TCGA-B1-5398      TCGA-B1-A47N      TCGA-B1-A654 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-B1-A656      TCGA-B1-A657      TCGA-B2-3923      TCGA-B2-3924 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-B2-5633      TCGA-B2-5635      TCGA-B3-3925      TCGA-B3-4104 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-B3-8121      TCGA-B4-5377      TCGA-B4-5836      TCGA-B8-4621 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-B8-5545      TCGA-B8-5550      TCGA-B8-5551      TCGA-B8-5552 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-B8-5553      TCGA-B9-4115      TCGA-B9-4117      TCGA-B9-5156 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-B9-A44B      TCGA-B9-A5W9      TCGA-B9-A69E      TCGA-BP-4173 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-BP-4340      TCGA-BP-4761      TCGA-BP-4770      TCGA-BP-4787 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-BP-4789      TCGA-BP-4790      TCGA-BP-4804      TCGA-BP-4807 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-BP-4961      TCGA-BP-4967      TCGA-BP-4968      TCGA-BP-4970 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-BP-4974      TCGA-BP-4976      TCGA-BP-4981      TCGA-BP-4982 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-BP-4985      TCGA-BP-4988      TCGA-BP-4989      TCGA-BP-4992 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-BP-4995      TCGA-BP-4998      TCGA-BP-5001      TCGA-BP-5008 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-BP-5009      TCGA-BQ-5876      TCGA-BQ-5877      TCGA-BQ-5878 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-BQ-5879      TCGA-BQ-5880      TCGA-BQ-5881      TCGA-BQ-5882 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-BQ-5883      TCGA-BQ-5884      TCGA-BQ-5886      TCGA-BQ-5887 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-BQ-5888      TCGA-BQ-5889      TCGA-BQ-5890      TCGA-BQ-5891 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-BQ-5892      TCGA-BQ-5893      TCGA-BQ-5894      TCGA-BQ-7044 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-BQ-7045      TCGA-BQ-7046      TCGA-BQ-7048      TCGA-BQ-7050 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-BQ-7051      TCGA-BQ-7053      TCGA-BQ-7055      TCGA-BQ-7058 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-BQ-7059      TCGA-BQ-7060      TCGA-BQ-7061      TCGA-BQ-7062 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-CJ-4870      TCGA-CJ-4875      TCGA-CJ-4876      TCGA-CJ-4878 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-CJ-4881      TCGA-CJ-4887      TCGA-CJ-4889      TCGA-CJ-4890 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-CJ-4895      TCGA-CJ-4900      TCGA-CJ-5671      TCGA-CJ-5675 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-CJ-5676      TCGA-CJ-5681      TCGA-CJ-5683      TCGA-CJ-5686 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-CJ-6031      TCGA-CJ-6032      TCGA-CW-5585      TCGA-CW-5589 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-CW-6087      TCGA-CZ-4854      TCGA-CZ-4857      TCGA-CZ-4858 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-CZ-5453      TCGA-CZ-5454      TCGA-CZ-5455      TCGA-CZ-5457 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-CZ-5459      TCGA-CZ-5462      TCGA-CZ-5463      TCGA-CZ-5466 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-CZ-5467      TCGA-CZ-5469      TCGA-CZ-5470      TCGA-CZ-5989 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-DV-5565      TCGA-DV-5566      TCGA-DV-5569      TCGA-DW-5561 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-DW-7834      TCGA-DW-7837      TCGA-DW-7838      TCGA-DW-7839 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-DW-7840      TCGA-DW-7842      TCGA-DZ-6131      TCGA-DZ-6132 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-DZ-6133      TCGA-DZ-6134      TCGA-DZ-6135      TCGA-EU-5904 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-EV-5901      TCGA-EV-5902      TCGA-EV-5903      TCGA-F9-A4JJ 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-G7-6789      TCGA-G7-6790      TCGA-G7-6792      TCGA-G7-6793 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-G7-6795      TCGA-G7-6796      TCGA-G7-7501      TCGA-G7-7502 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-G7-A4TM      TCGA-GL-6846      TCGA-GL-7773      TCGA-GL-7966 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-GL-8500      TCGA-GL-A4EM      TCGA-GL-A59T      TCGA-HE-7128 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-HE-7130      TCGA-HE-A5NJ      TCGA-IA-A40U      TCGA-IA-A40X 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-IA-A40Y      TCGA-IZ-8195      TCGA-IZ-8196      TCGA-IZ-A6M9 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-J7-6720      TCGA-J7-8537      TCGA-KL-8323      TCGA-KL-8324 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-KL-8327      TCGA-KL-8328      TCGA-KL-8331      TCGA-KL-8332 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-KL-8333      TCGA-KL-8334      TCGA-KL-8335      TCGA-KL-8336 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-KL-8338      TCGA-KL-8339      TCGA-KL-8340      TCGA-KL-8341 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-KL-8342      TCGA-KL-8343      TCGA-KL-8344      TCGA-KL-8345 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-KM-8438      TCGA-KM-8439      TCGA-KM-8441      TCGA-KM-8442 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-KM-8639      TCGA-KN-8418      TCGA-KN-8419      TCGA-KN-8422 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-KN-8423      TCGA-KN-8424      TCGA-KN-8426      TCGA-KN-8427 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-KN-8428      TCGA-KN-8429      TCGA-KN-8430      TCGA-KN-8431 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-KN-8432      TCGA-KN-8433      TCGA-KN-8434      TCGA-KN-8436 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-KN-8437      TCGA-KO-8404      TCGA-KO-8405      TCGA-KO-8408 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-KO-8409      TCGA-KO-8410      TCGA-KO-8413      TCGA-KO-8415 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-KO-8416      TCGA-KO-8417      TCGA-KV-A6GD      TCGA-KV-A6GE 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-P4-A5E6      TCGA-P4-A5E7      TCGA-P4-A5E8      TCGA-P4-A5EA 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-PJ-A5Z8      TCGA-PJ-A5Z9      TCGA-Q2-A5QZ 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMCO3 MUTATED        1      1      0      0      0
  TMCO3 WILD-TYPE     25     42     62    100     46
D62V10, multiclass
[1] "Remove cluster labels:" "TMCO3 MUTATED"         
clus
  TMCO3 MUTATED TMCO3 WILD-TYPE 
              2             275 
     TCGA-A3-3317      TCGA-A3-3358      TCGA-A3-3387      TCGA-A4-7286 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-A4-7287      TCGA-A4-7288      TCGA-A4-7585      TCGA-A4-7734 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-A4-7828      TCGA-A4-7915      TCGA-A4-7996      TCGA-A4-7997 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-A4-8098      TCGA-A4-8310      TCGA-A4-8312      TCGA-A4-8517 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-A4-8518      TCGA-A4-8630      TCGA-A4-A57E      TCGA-A4-A5XZ 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-A4-A5Y0      TCGA-A4-A5Y1      TCGA-AK-3440      TCGA-AK-3458 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-AK-3465      TCGA-AL-3466      TCGA-AL-3472      TCGA-AL-3473 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-AL-7173      TCGA-AT-A5NU      TCGA-B0-4700      TCGA-B0-4706 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-B0-4710      TCGA-B0-4712      TCGA-B0-4810      TCGA-B0-4811 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-B0-4836      TCGA-B0-4837      TCGA-B0-4852      TCGA-B0-5080 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-B0-5085      TCGA-B0-5088      TCGA-B0-5399      TCGA-B0-5691 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-B0-5692      TCGA-B0-5693      TCGA-B0-5694      TCGA-B0-5695 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-B0-5696      TCGA-B0-5699      TCGA-B0-5702      TCGA-B0-5705 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-B0-5709      TCGA-B1-5398      TCGA-B1-A47N      TCGA-B1-A654 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-B1-A656      TCGA-B1-A657      TCGA-B2-3923      TCGA-B2-3924 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-B2-5633      TCGA-B2-5635      TCGA-B3-3925      TCGA-B3-4104 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-B3-8121      TCGA-B4-5377      TCGA-B4-5836      TCGA-B8-4621 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-B8-5545      TCGA-B8-5550      TCGA-B8-5551      TCGA-B8-5552 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-B8-5553      TCGA-B9-4115      TCGA-B9-4117      TCGA-B9-5156 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-B9-A44B      TCGA-B9-A5W9      TCGA-B9-A69E      TCGA-BP-4173 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-BP-4340      TCGA-BP-4761      TCGA-BP-4770      TCGA-BP-4787 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-BP-4789      TCGA-BP-4790      TCGA-BP-4804      TCGA-BP-4807 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-BP-4961      TCGA-BP-4967      TCGA-BP-4968      TCGA-BP-4970 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-BP-4974      TCGA-BP-4976      TCGA-BP-4981      TCGA-BP-4982 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-BP-4985      TCGA-BP-4988      TCGA-BP-4989      TCGA-BP-4992 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-BP-4995      TCGA-BP-4998      TCGA-BP-5001      TCGA-BP-5008 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-BP-5009      TCGA-BQ-5876      TCGA-BQ-5877      TCGA-BQ-5878 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-BQ-5879      TCGA-BQ-5880      TCGA-BQ-5881      TCGA-BQ-5882 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-BQ-5883      TCGA-BQ-5884      TCGA-BQ-5886      TCGA-BQ-5887 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-BQ-5888      TCGA-BQ-5889      TCGA-BQ-5890      TCGA-BQ-5891 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-BQ-5892      TCGA-BQ-5893      TCGA-BQ-5894      TCGA-BQ-7044 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-BQ-7045      TCGA-BQ-7046      TCGA-BQ-7048      TCGA-BQ-7050 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-BQ-7051      TCGA-BQ-7053      TCGA-BQ-7055      TCGA-BQ-7058 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-BQ-7059      TCGA-BQ-7060      TCGA-BQ-7061      TCGA-BQ-7062 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-CJ-4870      TCGA-CJ-4875      TCGA-CJ-4876      TCGA-CJ-4878 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-CJ-4881      TCGA-CJ-4887      TCGA-CJ-4889      TCGA-CJ-4890 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-CJ-4895      TCGA-CJ-4900      TCGA-CJ-5671      TCGA-CJ-5675 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-CJ-5676      TCGA-CJ-5681      TCGA-CJ-5683      TCGA-CJ-5686 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-CJ-6031      TCGA-CJ-6032      TCGA-CW-5585      TCGA-CW-5589 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-CW-6087      TCGA-CZ-4854      TCGA-CZ-4857      TCGA-CZ-4858 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-CZ-5453      TCGA-CZ-5454      TCGA-CZ-5455      TCGA-CZ-5457 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-CZ-5459      TCGA-CZ-5462      TCGA-CZ-5463      TCGA-CZ-5466 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-CZ-5467      TCGA-CZ-5469      TCGA-CZ-5470      TCGA-CZ-5989 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-DV-5565      TCGA-DV-5566      TCGA-DV-5569      TCGA-DW-5561 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-DW-7834      TCGA-DW-7837      TCGA-DW-7838      TCGA-DW-7839 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-DW-7840      TCGA-DW-7842      TCGA-DZ-6131      TCGA-DZ-6132 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-DZ-6133      TCGA-DZ-6134      TCGA-DZ-6135      TCGA-EU-5904 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-EV-5901      TCGA-EV-5902      TCGA-EV-5903      TCGA-F9-A4JJ 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-G7-6789      TCGA-G7-6790      TCGA-G7-6792      TCGA-G7-6793 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-G7-6795      TCGA-G7-6796      TCGA-G7-7501      TCGA-G7-7502 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-G7-A4TM      TCGA-GL-6846      TCGA-GL-7773      TCGA-GL-7966 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-GL-8500      TCGA-GL-A4EM      TCGA-GL-A59T      TCGA-HE-7128 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-HE-7130      TCGA-HE-A5NJ      TCGA-IA-A40U      TCGA-IA-A40X 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-IA-A40Y      TCGA-IZ-8195      TCGA-IZ-8196      TCGA-IZ-A6M9 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-J7-6720      TCGA-J7-8537      TCGA-KL-8323      TCGA-KL-8324 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-KL-8327      TCGA-KL-8328      TCGA-KL-8331      TCGA-KL-8332 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-KL-8333      TCGA-KL-8334      TCGA-KL-8335      TCGA-KL-8336 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-KL-8338      TCGA-KL-8339      TCGA-KL-8340      TCGA-KL-8341 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-KL-8342      TCGA-KL-8343      TCGA-KL-8344      TCGA-KL-8345 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-KM-8438      TCGA-KM-8439      TCGA-KM-8441      TCGA-KM-8442 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-KM-8639      TCGA-KN-8418      TCGA-KN-8419      TCGA-KN-8422 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-KN-8423      TCGA-KN-8424      TCGA-KN-8426      TCGA-KN-8427 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-KN-8428      TCGA-KN-8429      TCGA-KN-8430      TCGA-KN-8431 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-KN-8432      TCGA-KN-8433      TCGA-KN-8434      TCGA-KN-8436 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-KN-8437      TCGA-KO-8404      TCGA-KO-8405      TCGA-KO-8408 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-KO-8409      TCGA-KO-8410      TCGA-KO-8413      TCGA-KO-8415 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-KO-8416      TCGA-KO-8417      TCGA-KV-A6GD      TCGA-KV-A6GE 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-P4-A5E6      TCGA-P4-A5E7      TCGA-P4-A5E8      TCGA-P4-A5EA 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 
     TCGA-PJ-A5Z8      TCGA-PJ-A5Z9      TCGA-Q2-A5QZ 
"TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" "TMCO3 WILD-TYPE" 

Clustering(63) Variable = CCDC82 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC82 MUTATED        0      0      0      0
  CCDC82 WILD-TYPE     21     17      9     14
D63V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC82 MUTATED        0      0      0      0      0
  CCDC82 WILD-TYPE     11     17     14     10      9
D63V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CCDC82 MUTATED        1      5      0
  CCDC82 WILD-TYPE    179    237    243
D63V3, multiclass
        clus
vv       CCDC82 MUTATED CCDC82 WILD-TYPE
  CLUS_1              1              179
  CLUS_2              5              237
  CLUS_3              0              243
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CCDC82 MUTATED        1      5      0
  CCDC82 WILD-TYPE    102    250    119
D63V4, multiclass
        clus
vv       CCDC82 MUTATED CCDC82 WILD-TYPE
  CLUS_1              1              102
  CLUS_2              5              250
  CLUS_3              0              119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC82 MUTATED        1      0      5      0
  CCDC82 WILD-TYPE     97    174    240    149
D63V5, multiclass
        clus
vv       CCDC82 MUTATED CCDC82 WILD-TYPE
  CLUS_1              1               97
  CLUS_2              0              174
  CLUS_3              5              240
  CLUS_4              0              149
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CCDC82 MUTATED        1      0      1      0      4      0
  CCDC82 WILD-TYPE     79     90    176    138     86     91
D63V6, multiclass
        clus
vv       CCDC82 MUTATED CCDC82 WILD-TYPE
  CLUS_1              1               79
  CLUS_2              0               90
  CLUS_3              1              176
  CLUS_4              0              138
  CLUS_5              4               86
  CLUS_6              0               91
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CCDC82 MUTATED        1      0      5
  CCDC82 WILD-TYPE    213    148    291
D63V7, multiclass
        clus
vv       CCDC82 MUTATED CCDC82 WILD-TYPE
  CLUS_1              1              213
  CLUS_2              0              148
  CLUS_3              5              291
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CCDC82 MUTATED        1      5      0
  CCDC82 WILD-TYPE     71    471    110
D63V8, multiclass
        clus
vv       CCDC82 MUTATED CCDC82 WILD-TYPE
  CLUS_1              1               71
  CLUS_2              5              471
  CLUS_3              0              110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC82 MUTATED        0      0      0      2
  CCDC82 WILD-TYPE     76     60     42     97
D63V9, multiclass
[1] "Remove cluster labels:" "CCDC82 MUTATED"        
clus
  CCDC82 MUTATED CCDC82 WILD-TYPE 
               2              275 
      TCGA-A3-3317       TCGA-A3-3358       TCGA-A3-3387       TCGA-A4-7286 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-A4-7287       TCGA-A4-7288       TCGA-A4-7585       TCGA-A4-7734 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-A4-7828       TCGA-A4-7915       TCGA-A4-7996       TCGA-A4-7997 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-A4-8098       TCGA-A4-8310       TCGA-A4-8312       TCGA-A4-8515 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-A4-8517       TCGA-A4-8518       TCGA-A4-8630       TCGA-A4-A57E 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-A4-A5XZ       TCGA-A4-A5Y0       TCGA-A4-A5Y1       TCGA-AK-3440 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-AK-3458       TCGA-AK-3465       TCGA-AL-3466       TCGA-AL-3472 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-AL-3473       TCGA-AL-7173       TCGA-AT-A5NU       TCGA-B0-4700 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-B0-4706       TCGA-B0-4710       TCGA-B0-4712       TCGA-B0-4810 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-B0-4811       TCGA-B0-4836       TCGA-B0-4837       TCGA-B0-4852 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-B0-5080       TCGA-B0-5085       TCGA-B0-5088       TCGA-B0-5399 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-B0-5691       TCGA-B0-5692       TCGA-B0-5693       TCGA-B0-5694 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-B0-5695       TCGA-B0-5696       TCGA-B0-5699       TCGA-B0-5702 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-B0-5705       TCGA-B0-5709       TCGA-B1-5398       TCGA-B1-A47N 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-B1-A654       TCGA-B1-A656       TCGA-B1-A657       TCGA-B2-3923 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-B2-3924       TCGA-B2-5633       TCGA-B2-5635       TCGA-B3-3925 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-B3-4104       TCGA-B3-8121       TCGA-B4-5377       TCGA-B8-4621 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-B8-5545       TCGA-B8-5550       TCGA-B8-5551       TCGA-B8-5552 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-B8-5553       TCGA-B9-4115       TCGA-B9-4117       TCGA-B9-5156 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-B9-A44B       TCGA-B9-A5W9       TCGA-B9-A69E       TCGA-BP-4173 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-BP-4340       TCGA-BP-4761       TCGA-BP-4770       TCGA-BP-4787 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-BP-4789       TCGA-BP-4790       TCGA-BP-4804       TCGA-BP-4807 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-BP-4961       TCGA-BP-4967       TCGA-BP-4968       TCGA-BP-4970 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-BP-4974       TCGA-BP-4976       TCGA-BP-4981       TCGA-BP-4982 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-BP-4985       TCGA-BP-4988       TCGA-BP-4989       TCGA-BP-4992 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-BP-4995       TCGA-BP-4998       TCGA-BP-5001       TCGA-BP-5008 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-BP-5009       TCGA-BQ-5876       TCGA-BQ-5877       TCGA-BQ-5878 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-BQ-5879       TCGA-BQ-5880       TCGA-BQ-5881       TCGA-BQ-5882 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-BQ-5883       TCGA-BQ-5884       TCGA-BQ-5886       TCGA-BQ-5887 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-BQ-5888       TCGA-BQ-5889       TCGA-BQ-5890       TCGA-BQ-5891 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-BQ-5892       TCGA-BQ-5893       TCGA-BQ-5894       TCGA-BQ-7044 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-BQ-7045       TCGA-BQ-7046       TCGA-BQ-7048       TCGA-BQ-7050 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-BQ-7051       TCGA-BQ-7053       TCGA-BQ-7055       TCGA-BQ-7058 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-BQ-7059       TCGA-BQ-7060       TCGA-BQ-7061       TCGA-BQ-7062 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-CJ-4870       TCGA-CJ-4875       TCGA-CJ-4876       TCGA-CJ-4878 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-CJ-4881       TCGA-CJ-4887       TCGA-CJ-4889       TCGA-CJ-4890 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-CJ-4895       TCGA-CJ-4900       TCGA-CJ-5671       TCGA-CJ-5675 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-CJ-5676       TCGA-CJ-5681       TCGA-CJ-5683       TCGA-CJ-6031 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-CJ-6032       TCGA-CW-5585       TCGA-CW-5589       TCGA-CW-6087 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-CZ-4854       TCGA-CZ-4857       TCGA-CZ-4858       TCGA-CZ-5453 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-CZ-5454       TCGA-CZ-5455       TCGA-CZ-5457       TCGA-CZ-5459 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-CZ-5462       TCGA-CZ-5463       TCGA-CZ-5466       TCGA-CZ-5467 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-CZ-5469       TCGA-CZ-5470       TCGA-CZ-5989       TCGA-DV-5565 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-DV-5566       TCGA-DV-5569       TCGA-DW-5560       TCGA-DW-5561 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-DW-7834       TCGA-DW-7837       TCGA-DW-7838       TCGA-DW-7839 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-DW-7840       TCGA-DW-7842       TCGA-DZ-6131       TCGA-DZ-6132 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-DZ-6133       TCGA-DZ-6134       TCGA-DZ-6135       TCGA-EU-5904 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-EV-5901       TCGA-EV-5902       TCGA-EV-5903       TCGA-F9-A4JJ 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-G7-6789       TCGA-G7-6790       TCGA-G7-6792       TCGA-G7-6793 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-G7-6795       TCGA-G7-6796       TCGA-G7-7501       TCGA-G7-7502 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-G7-A4TM       TCGA-GL-6846       TCGA-GL-7773       TCGA-GL-7966 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-GL-8500       TCGA-GL-A4EM       TCGA-GL-A59T       TCGA-HE-7128 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-HE-7130       TCGA-HE-A5NJ       TCGA-IA-A40U       TCGA-IA-A40X 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-IA-A40Y       TCGA-IZ-8195       TCGA-IZ-8196       TCGA-IZ-A6M9 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-J7-6720       TCGA-J7-8537       TCGA-KL-8323       TCGA-KL-8324 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-KL-8327       TCGA-KL-8328       TCGA-KL-8331       TCGA-KL-8332 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-KL-8333       TCGA-KL-8334       TCGA-KL-8335       TCGA-KL-8336 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-KL-8338       TCGA-KL-8339       TCGA-KL-8340       TCGA-KL-8341 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-KL-8342       TCGA-KL-8343       TCGA-KL-8344       TCGA-KL-8345 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-KM-8438       TCGA-KM-8439       TCGA-KM-8441       TCGA-KM-8442 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-KM-8639       TCGA-KN-8418       TCGA-KN-8419       TCGA-KN-8422 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-KN-8423       TCGA-KN-8424       TCGA-KN-8426       TCGA-KN-8427 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-KN-8428       TCGA-KN-8429       TCGA-KN-8430       TCGA-KN-8431 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-KN-8432       TCGA-KN-8433       TCGA-KN-8434       TCGA-KN-8436 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-KN-8437       TCGA-KO-8404       TCGA-KO-8405       TCGA-KO-8408 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-KO-8409       TCGA-KO-8410       TCGA-KO-8413       TCGA-KO-8415 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-KO-8416       TCGA-KO-8417       TCGA-KV-A6GD       TCGA-KV-A6GE 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-P4-A5E6       TCGA-P4-A5E7       TCGA-P4-A5E8       TCGA-P4-A5EA 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-PJ-A5Z8       TCGA-PJ-A5Z9       TCGA-Q2-A5QZ 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC82 MUTATED        0      0      0      2      0
  CCDC82 WILD-TYPE     26     43     62     98     46
D63V10, multiclass
[1] "Remove cluster labels:" "CCDC82 MUTATED"        
clus
  CCDC82 MUTATED CCDC82 WILD-TYPE 
               2              275 
      TCGA-A3-3317       TCGA-A3-3358       TCGA-A3-3387       TCGA-A4-7286 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-A4-7287       TCGA-A4-7288       TCGA-A4-7585       TCGA-A4-7734 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-A4-7828       TCGA-A4-7915       TCGA-A4-7996       TCGA-A4-7997 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-A4-8098       TCGA-A4-8310       TCGA-A4-8312       TCGA-A4-8515 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-A4-8517       TCGA-A4-8518       TCGA-A4-8630       TCGA-A4-A57E 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-A4-A5XZ       TCGA-A4-A5Y0       TCGA-A4-A5Y1       TCGA-AK-3440 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-AK-3458       TCGA-AK-3465       TCGA-AL-3466       TCGA-AL-3472 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-AL-3473       TCGA-AL-7173       TCGA-AT-A5NU       TCGA-B0-4700 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-B0-4706       TCGA-B0-4710       TCGA-B0-4712       TCGA-B0-4810 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-B0-4811       TCGA-B0-4836       TCGA-B0-4837       TCGA-B0-4852 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-B0-5080       TCGA-B0-5085       TCGA-B0-5088       TCGA-B0-5399 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-B0-5691       TCGA-B0-5692       TCGA-B0-5693       TCGA-B0-5694 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-B0-5695       TCGA-B0-5696       TCGA-B0-5699       TCGA-B0-5702 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-B0-5705       TCGA-B0-5709       TCGA-B1-5398       TCGA-B1-A47N 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-B1-A654       TCGA-B1-A656       TCGA-B1-A657       TCGA-B2-3923 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-B2-3924       TCGA-B2-5633       TCGA-B2-5635       TCGA-B3-3925 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-B3-4104       TCGA-B3-8121       TCGA-B4-5377       TCGA-B8-4621 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-B8-5545       TCGA-B8-5550       TCGA-B8-5551       TCGA-B8-5552 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-B8-5553       TCGA-B9-4115       TCGA-B9-4117       TCGA-B9-5156 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-B9-A44B       TCGA-B9-A5W9       TCGA-B9-A69E       TCGA-BP-4173 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-BP-4340       TCGA-BP-4761       TCGA-BP-4770       TCGA-BP-4787 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-BP-4789       TCGA-BP-4790       TCGA-BP-4804       TCGA-BP-4807 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-BP-4961       TCGA-BP-4967       TCGA-BP-4968       TCGA-BP-4970 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-BP-4974       TCGA-BP-4976       TCGA-BP-4981       TCGA-BP-4982 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-BP-4985       TCGA-BP-4988       TCGA-BP-4989       TCGA-BP-4992 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-BP-4995       TCGA-BP-4998       TCGA-BP-5001       TCGA-BP-5008 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-BP-5009       TCGA-BQ-5876       TCGA-BQ-5877       TCGA-BQ-5878 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-BQ-5879       TCGA-BQ-5880       TCGA-BQ-5881       TCGA-BQ-5882 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-BQ-5883       TCGA-BQ-5884       TCGA-BQ-5886       TCGA-BQ-5887 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-BQ-5888       TCGA-BQ-5889       TCGA-BQ-5890       TCGA-BQ-5891 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-BQ-5892       TCGA-BQ-5893       TCGA-BQ-5894       TCGA-BQ-7044 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-BQ-7045       TCGA-BQ-7046       TCGA-BQ-7048       TCGA-BQ-7050 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-BQ-7051       TCGA-BQ-7053       TCGA-BQ-7055       TCGA-BQ-7058 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-BQ-7059       TCGA-BQ-7060       TCGA-BQ-7061       TCGA-BQ-7062 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-CJ-4870       TCGA-CJ-4875       TCGA-CJ-4876       TCGA-CJ-4878 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-CJ-4881       TCGA-CJ-4887       TCGA-CJ-4889       TCGA-CJ-4890 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-CJ-4895       TCGA-CJ-4900       TCGA-CJ-5671       TCGA-CJ-5675 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-CJ-5676       TCGA-CJ-5681       TCGA-CJ-5683       TCGA-CJ-6031 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-CJ-6032       TCGA-CW-5585       TCGA-CW-5589       TCGA-CW-6087 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-CZ-4854       TCGA-CZ-4857       TCGA-CZ-4858       TCGA-CZ-5453 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-CZ-5454       TCGA-CZ-5455       TCGA-CZ-5457       TCGA-CZ-5459 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-CZ-5462       TCGA-CZ-5463       TCGA-CZ-5466       TCGA-CZ-5467 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-CZ-5469       TCGA-CZ-5470       TCGA-CZ-5989       TCGA-DV-5565 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-DV-5566       TCGA-DV-5569       TCGA-DW-5560       TCGA-DW-5561 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-DW-7834       TCGA-DW-7837       TCGA-DW-7838       TCGA-DW-7839 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-DW-7840       TCGA-DW-7842       TCGA-DZ-6131       TCGA-DZ-6132 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-DZ-6133       TCGA-DZ-6134       TCGA-DZ-6135       TCGA-EU-5904 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-EV-5901       TCGA-EV-5902       TCGA-EV-5903       TCGA-F9-A4JJ 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-G7-6789       TCGA-G7-6790       TCGA-G7-6792       TCGA-G7-6793 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-G7-6795       TCGA-G7-6796       TCGA-G7-7501       TCGA-G7-7502 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-G7-A4TM       TCGA-GL-6846       TCGA-GL-7773       TCGA-GL-7966 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-GL-8500       TCGA-GL-A4EM       TCGA-GL-A59T       TCGA-HE-7128 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-HE-7130       TCGA-HE-A5NJ       TCGA-IA-A40U       TCGA-IA-A40X 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-IA-A40Y       TCGA-IZ-8195       TCGA-IZ-8196       TCGA-IZ-A6M9 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-J7-6720       TCGA-J7-8537       TCGA-KL-8323       TCGA-KL-8324 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-KL-8327       TCGA-KL-8328       TCGA-KL-8331       TCGA-KL-8332 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-KL-8333       TCGA-KL-8334       TCGA-KL-8335       TCGA-KL-8336 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-KL-8338       TCGA-KL-8339       TCGA-KL-8340       TCGA-KL-8341 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-KL-8342       TCGA-KL-8343       TCGA-KL-8344       TCGA-KL-8345 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-KM-8438       TCGA-KM-8439       TCGA-KM-8441       TCGA-KM-8442 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-KM-8639       TCGA-KN-8418       TCGA-KN-8419       TCGA-KN-8422 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-KN-8423       TCGA-KN-8424       TCGA-KN-8426       TCGA-KN-8427 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-KN-8428       TCGA-KN-8429       TCGA-KN-8430       TCGA-KN-8431 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-KN-8432       TCGA-KN-8433       TCGA-KN-8434       TCGA-KN-8436 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-KN-8437       TCGA-KO-8404       TCGA-KO-8405       TCGA-KO-8408 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-KO-8409       TCGA-KO-8410       TCGA-KO-8413       TCGA-KO-8415 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-KO-8416       TCGA-KO-8417       TCGA-KV-A6GD       TCGA-KV-A6GE 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-P4-A5E6       TCGA-P4-A5E7       TCGA-P4-A5E8       TCGA-P4-A5EA 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 
      TCGA-PJ-A5Z8       TCGA-PJ-A5Z9       TCGA-Q2-A5QZ 
"CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" "CCDC82 WILD-TYPE" 

Clustering(64) Variable = NFAT5 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NFAT5 MUTATED        0      0      0      0
  NFAT5 WILD-TYPE     21     17      9     14
D64V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NFAT5 MUTATED        0      0      0      0      0
  NFAT5 WILD-TYPE     11     17     14     10      9
D64V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NFAT5 MUTATED        3      3      2
  NFAT5 WILD-TYPE    177    239    241
D64V3, multiclass
        clus
vv       NFAT5 MUTATED NFAT5 WILD-TYPE
  CLUS_1             3             177
  CLUS_2             3             239
  CLUS_3             2             241
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NFAT5 MUTATED        1      6      1
  NFAT5 WILD-TYPE    102    249    118
D64V4, multiclass
        clus
vv       NFAT5 MUTATED NFAT5 WILD-TYPE
  CLUS_1             1             102
  CLUS_2             6             249
  CLUS_3             1             118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NFAT5 MUTATED        1      4      2      1
  NFAT5 WILD-TYPE     97    170    243    148
D64V5, multiclass
        clus
vv       NFAT5 MUTATED NFAT5 WILD-TYPE
  CLUS_1             1              97
  CLUS_2             4             170
  CLUS_3             2             243
  CLUS_4             1             148
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NFAT5 MUTATED        1      1      4      2      0      0
  NFAT5 WILD-TYPE     79     89    173    136     90     91
D64V6, multiclass
        clus
vv       NFAT5 MUTATED NFAT5 WILD-TYPE
  CLUS_1             1              79
  CLUS_2             1              89
  CLUS_3             4             173
  CLUS_4             2             136
  CLUS_5             0              90
  CLUS_6             0              91
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NFAT5 MUTATED        2      1      5
  NFAT5 WILD-TYPE    212    147    291
D64V7, multiclass
        clus
vv       NFAT5 MUTATED NFAT5 WILD-TYPE
  CLUS_1             2             212
  CLUS_2             1             147
  CLUS_3             5             291
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NFAT5 MUTATED        1      6      1
  NFAT5 WILD-TYPE     71    470    109
D64V8, multiclass
        clus
vv       NFAT5 MUTATED NFAT5 WILD-TYPE
  CLUS_1             1              71
  CLUS_2             6             470
  CLUS_3             1             109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NFAT5 MUTATED        0      1      0      1
  NFAT5 WILD-TYPE     76     59     42     98
D64V9, multiclass
[1] "Remove cluster labels:" "NFAT5 MUTATED"         
clus
  NFAT5 MUTATED NFAT5 WILD-TYPE 
              2             275 
     TCGA-A3-3317      TCGA-A3-3358      TCGA-A3-3387      TCGA-A4-7286 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-A4-7287      TCGA-A4-7288      TCGA-A4-7585      TCGA-A4-7734 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-A4-7828      TCGA-A4-7915      TCGA-A4-7996      TCGA-A4-7997 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-A4-8098      TCGA-A4-8310      TCGA-A4-8312      TCGA-A4-8515 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-A4-8517      TCGA-A4-8518      TCGA-A4-8630      TCGA-A4-A57E 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-A4-A5XZ      TCGA-A4-A5Y0      TCGA-A4-A5Y1      TCGA-AK-3440 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-AK-3458      TCGA-AK-3465      TCGA-AL-3466      TCGA-AL-3472 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-AL-3473      TCGA-AL-7173      TCGA-AT-A5NU      TCGA-B0-4700 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-B0-4706      TCGA-B0-4710      TCGA-B0-4712      TCGA-B0-4810 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-B0-4811      TCGA-B0-4836      TCGA-B0-4837      TCGA-B0-4852 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-B0-5080      TCGA-B0-5085      TCGA-B0-5088      TCGA-B0-5399 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-B0-5691      TCGA-B0-5692      TCGA-B0-5693      TCGA-B0-5694 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-B0-5695      TCGA-B0-5696      TCGA-B0-5699      TCGA-B0-5702 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-B0-5705      TCGA-B0-5709      TCGA-B1-5398      TCGA-B1-A47N 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-B1-A654      TCGA-B1-A656      TCGA-B1-A657      TCGA-B2-3923 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-B2-3924      TCGA-B2-5635      TCGA-B3-3925      TCGA-B3-4104 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-B3-8121      TCGA-B4-5377      TCGA-B4-5836      TCGA-B8-4621 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-B8-5545      TCGA-B8-5550      TCGA-B8-5551      TCGA-B8-5552 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-B8-5553      TCGA-B9-4115      TCGA-B9-4117      TCGA-B9-5156 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-B9-A44B      TCGA-B9-A5W9      TCGA-B9-A69E      TCGA-BP-4173 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-BP-4340      TCGA-BP-4761      TCGA-BP-4770      TCGA-BP-4787 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-BP-4789      TCGA-BP-4790      TCGA-BP-4804      TCGA-BP-4807 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-BP-4961      TCGA-BP-4967      TCGA-BP-4968      TCGA-BP-4970 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-BP-4974      TCGA-BP-4976      TCGA-BP-4981      TCGA-BP-4982 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-BP-4985      TCGA-BP-4988      TCGA-BP-4989      TCGA-BP-4992 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-BP-4995      TCGA-BP-4998      TCGA-BP-5001      TCGA-BP-5008 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-BP-5009      TCGA-BQ-5876      TCGA-BQ-5877      TCGA-BQ-5878 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-BQ-5879      TCGA-BQ-5880      TCGA-BQ-5881      TCGA-BQ-5882 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-BQ-5883      TCGA-BQ-5884      TCGA-BQ-5886      TCGA-BQ-5887 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-BQ-5888      TCGA-BQ-5889      TCGA-BQ-5890      TCGA-BQ-5891 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-BQ-5892      TCGA-BQ-5893      TCGA-BQ-5894      TCGA-BQ-7044 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-BQ-7045      TCGA-BQ-7046      TCGA-BQ-7048      TCGA-BQ-7050 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-BQ-7051      TCGA-BQ-7053      TCGA-BQ-7055      TCGA-BQ-7058 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-BQ-7059      TCGA-BQ-7060      TCGA-BQ-7061      TCGA-BQ-7062 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-CJ-4870      TCGA-CJ-4875      TCGA-CJ-4876      TCGA-CJ-4878 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-CJ-4881      TCGA-CJ-4887      TCGA-CJ-4889      TCGA-CJ-4890 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-CJ-4895      TCGA-CJ-4900      TCGA-CJ-5671      TCGA-CJ-5675 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-CJ-5676      TCGA-CJ-5681      TCGA-CJ-5683      TCGA-CJ-5686 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-CJ-6031      TCGA-CJ-6032      TCGA-CW-5585      TCGA-CW-5589 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-CW-6087      TCGA-CZ-4854      TCGA-CZ-4857      TCGA-CZ-4858 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-CZ-5453      TCGA-CZ-5454      TCGA-CZ-5455      TCGA-CZ-5457 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-CZ-5459      TCGA-CZ-5462      TCGA-CZ-5463      TCGA-CZ-5466 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-CZ-5467      TCGA-CZ-5469      TCGA-CZ-5470      TCGA-CZ-5989 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-DV-5565      TCGA-DV-5566      TCGA-DV-5569      TCGA-DW-5560 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-DW-5561      TCGA-DW-7834      TCGA-DW-7837      TCGA-DW-7838 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-DW-7839      TCGA-DW-7840      TCGA-DW-7842      TCGA-DZ-6131 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-DZ-6132      TCGA-DZ-6133      TCGA-DZ-6134      TCGA-DZ-6135 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-EU-5904      TCGA-EV-5901      TCGA-EV-5902      TCGA-EV-5903 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-F9-A4JJ      TCGA-G7-6789      TCGA-G7-6790      TCGA-G7-6792 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-G7-6793      TCGA-G7-6795      TCGA-G7-6796      TCGA-G7-7501 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-G7-7502      TCGA-G7-A4TM      TCGA-GL-6846      TCGA-GL-7773 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-GL-7966      TCGA-GL-8500      TCGA-GL-A4EM      TCGA-GL-A59T 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-HE-7128      TCGA-HE-7130      TCGA-HE-A5NJ      TCGA-IA-A40U 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-IA-A40X      TCGA-IA-A40Y      TCGA-IZ-8195      TCGA-IZ-8196 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-IZ-A6M9      TCGA-J7-6720      TCGA-J7-8537      TCGA-KL-8323 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-KL-8324      TCGA-KL-8327      TCGA-KL-8328      TCGA-KL-8331 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-KL-8332      TCGA-KL-8333      TCGA-KL-8335      TCGA-KL-8336 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-KL-8338      TCGA-KL-8339      TCGA-KL-8340      TCGA-KL-8341 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-KL-8342      TCGA-KL-8343      TCGA-KL-8344      TCGA-KL-8345 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-KM-8438      TCGA-KM-8439      TCGA-KM-8441      TCGA-KM-8442 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-KM-8639      TCGA-KN-8418      TCGA-KN-8419      TCGA-KN-8422 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-KN-8423      TCGA-KN-8424      TCGA-KN-8426      TCGA-KN-8427 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-KN-8428      TCGA-KN-8429      TCGA-KN-8430      TCGA-KN-8431 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-KN-8432      TCGA-KN-8433      TCGA-KN-8434      TCGA-KN-8436 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-KN-8437      TCGA-KO-8404      TCGA-KO-8405      TCGA-KO-8408 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-KO-8409      TCGA-KO-8410      TCGA-KO-8413      TCGA-KO-8415 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-KO-8416      TCGA-KO-8417      TCGA-KV-A6GD      TCGA-KV-A6GE 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-P4-A5E6      TCGA-P4-A5E7      TCGA-P4-A5E8      TCGA-P4-A5EA 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-PJ-A5Z8      TCGA-PJ-A5Z9      TCGA-Q2-A5QZ 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NFAT5 MUTATED        0      0      0      1      1
  NFAT5 WILD-TYPE     26     43     62     99     45
D64V10, multiclass
[1] "Remove cluster labels:" "NFAT5 MUTATED"         
clus
  NFAT5 MUTATED NFAT5 WILD-TYPE 
              2             275 
     TCGA-A3-3317      TCGA-A3-3358      TCGA-A3-3387      TCGA-A4-7286 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-A4-7287      TCGA-A4-7288      TCGA-A4-7585      TCGA-A4-7734 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-A4-7828      TCGA-A4-7915      TCGA-A4-7996      TCGA-A4-7997 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-A4-8098      TCGA-A4-8310      TCGA-A4-8312      TCGA-A4-8515 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-A4-8517      TCGA-A4-8518      TCGA-A4-8630      TCGA-A4-A57E 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-A4-A5XZ      TCGA-A4-A5Y0      TCGA-A4-A5Y1      TCGA-AK-3440 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-AK-3458      TCGA-AK-3465      TCGA-AL-3466      TCGA-AL-3472 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-AL-3473      TCGA-AL-7173      TCGA-AT-A5NU      TCGA-B0-4700 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-B0-4706      TCGA-B0-4710      TCGA-B0-4712      TCGA-B0-4810 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-B0-4811      TCGA-B0-4836      TCGA-B0-4837      TCGA-B0-4852 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-B0-5080      TCGA-B0-5085      TCGA-B0-5088      TCGA-B0-5399 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-B0-5691      TCGA-B0-5692      TCGA-B0-5693      TCGA-B0-5694 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-B0-5695      TCGA-B0-5696      TCGA-B0-5699      TCGA-B0-5702 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-B0-5705      TCGA-B0-5709      TCGA-B1-5398      TCGA-B1-A47N 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-B1-A654      TCGA-B1-A656      TCGA-B1-A657      TCGA-B2-3923 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-B2-3924      TCGA-B2-5635      TCGA-B3-3925      TCGA-B3-4104 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-B3-8121      TCGA-B4-5377      TCGA-B4-5836      TCGA-B8-4621 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-B8-5545      TCGA-B8-5550      TCGA-B8-5551      TCGA-B8-5552 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-B8-5553      TCGA-B9-4115      TCGA-B9-4117      TCGA-B9-5156 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-B9-A44B      TCGA-B9-A5W9      TCGA-B9-A69E      TCGA-BP-4173 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-BP-4340      TCGA-BP-4761      TCGA-BP-4770      TCGA-BP-4787 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-BP-4789      TCGA-BP-4790      TCGA-BP-4804      TCGA-BP-4807 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-BP-4961      TCGA-BP-4967      TCGA-BP-4968      TCGA-BP-4970 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-BP-4974      TCGA-BP-4976      TCGA-BP-4981      TCGA-BP-4982 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-BP-4985      TCGA-BP-4988      TCGA-BP-4989      TCGA-BP-4992 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-BP-4995      TCGA-BP-4998      TCGA-BP-5001      TCGA-BP-5008 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-BP-5009      TCGA-BQ-5876      TCGA-BQ-5877      TCGA-BQ-5878 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-BQ-5879      TCGA-BQ-5880      TCGA-BQ-5881      TCGA-BQ-5882 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-BQ-5883      TCGA-BQ-5884      TCGA-BQ-5886      TCGA-BQ-5887 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-BQ-5888      TCGA-BQ-5889      TCGA-BQ-5890      TCGA-BQ-5891 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-BQ-5892      TCGA-BQ-5893      TCGA-BQ-5894      TCGA-BQ-7044 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-BQ-7045      TCGA-BQ-7046      TCGA-BQ-7048      TCGA-BQ-7050 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-BQ-7051      TCGA-BQ-7053      TCGA-BQ-7055      TCGA-BQ-7058 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-BQ-7059      TCGA-BQ-7060      TCGA-BQ-7061      TCGA-BQ-7062 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-CJ-4870      TCGA-CJ-4875      TCGA-CJ-4876      TCGA-CJ-4878 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-CJ-4881      TCGA-CJ-4887      TCGA-CJ-4889      TCGA-CJ-4890 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-CJ-4895      TCGA-CJ-4900      TCGA-CJ-5671      TCGA-CJ-5675 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-CJ-5676      TCGA-CJ-5681      TCGA-CJ-5683      TCGA-CJ-5686 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-CJ-6031      TCGA-CJ-6032      TCGA-CW-5585      TCGA-CW-5589 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-CW-6087      TCGA-CZ-4854      TCGA-CZ-4857      TCGA-CZ-4858 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-CZ-5453      TCGA-CZ-5454      TCGA-CZ-5455      TCGA-CZ-5457 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-CZ-5459      TCGA-CZ-5462      TCGA-CZ-5463      TCGA-CZ-5466 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-CZ-5467      TCGA-CZ-5469      TCGA-CZ-5470      TCGA-CZ-5989 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-DV-5565      TCGA-DV-5566      TCGA-DV-5569      TCGA-DW-5560 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-DW-5561      TCGA-DW-7834      TCGA-DW-7837      TCGA-DW-7838 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-DW-7839      TCGA-DW-7840      TCGA-DW-7842      TCGA-DZ-6131 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-DZ-6132      TCGA-DZ-6133      TCGA-DZ-6134      TCGA-DZ-6135 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-EU-5904      TCGA-EV-5901      TCGA-EV-5902      TCGA-EV-5903 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-F9-A4JJ      TCGA-G7-6789      TCGA-G7-6790      TCGA-G7-6792 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-G7-6793      TCGA-G7-6795      TCGA-G7-6796      TCGA-G7-7501 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-G7-7502      TCGA-G7-A4TM      TCGA-GL-6846      TCGA-GL-7773 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-GL-7966      TCGA-GL-8500      TCGA-GL-A4EM      TCGA-GL-A59T 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-HE-7128      TCGA-HE-7130      TCGA-HE-A5NJ      TCGA-IA-A40U 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-IA-A40X      TCGA-IA-A40Y      TCGA-IZ-8195      TCGA-IZ-8196 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-IZ-A6M9      TCGA-J7-6720      TCGA-J7-8537      TCGA-KL-8323 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-KL-8324      TCGA-KL-8327      TCGA-KL-8328      TCGA-KL-8331 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-KL-8332      TCGA-KL-8333      TCGA-KL-8335      TCGA-KL-8336 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-KL-8338      TCGA-KL-8339      TCGA-KL-8340      TCGA-KL-8341 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-KL-8342      TCGA-KL-8343      TCGA-KL-8344      TCGA-KL-8345 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-KM-8438      TCGA-KM-8439      TCGA-KM-8441      TCGA-KM-8442 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-KM-8639      TCGA-KN-8418      TCGA-KN-8419      TCGA-KN-8422 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-KN-8423      TCGA-KN-8424      TCGA-KN-8426      TCGA-KN-8427 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-KN-8428      TCGA-KN-8429      TCGA-KN-8430      TCGA-KN-8431 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-KN-8432      TCGA-KN-8433      TCGA-KN-8434      TCGA-KN-8436 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-KN-8437      TCGA-KO-8404      TCGA-KO-8405      TCGA-KO-8408 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-KO-8409      TCGA-KO-8410      TCGA-KO-8413      TCGA-KO-8415 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-KO-8416      TCGA-KO-8417      TCGA-KV-A6GD      TCGA-KV-A6GE 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-P4-A5E6      TCGA-P4-A5E7      TCGA-P4-A5E8      TCGA-P4-A5EA 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-PJ-A5Z8      TCGA-PJ-A5Z9      TCGA-Q2-A5QZ 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 

Clustering(65) Variable = HNF1B MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HNF1B MUTATED        0      0      0      0
  HNF1B WILD-TYPE     21     17      9     14
D65V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HNF1B MUTATED        0      0      0      0      0
  HNF1B WILD-TYPE     11     17     14     10      9
D65V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HNF1B MUTATED        1      0      2
  HNF1B WILD-TYPE    179    242    241
D65V3, multiclass
        clus
vv       HNF1B MUTATED HNF1B WILD-TYPE
  CLUS_1             1             179
  CLUS_2             0             242
  CLUS_3             2             241
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HNF1B MUTATED        1      2      0
  HNF1B WILD-TYPE    102    253    119
D65V4, multiclass
        clus
vv       HNF1B MUTATED HNF1B WILD-TYPE
  CLUS_1             1             102
  CLUS_2             2             253
  CLUS_3             0             119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HNF1B MUTATED        1      0      2      0
  HNF1B WILD-TYPE     97    174    243    149
D65V5, multiclass
        clus
vv       HNF1B MUTATED HNF1B WILD-TYPE
  CLUS_1             1              97
  CLUS_2             0             174
  CLUS_3             2             243
  CLUS_4             0             149
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HNF1B MUTATED        1      0      2      0      0      0
  HNF1B WILD-TYPE     79     90    175    138     90     91
D65V6, multiclass
        clus
vv       HNF1B MUTATED HNF1B WILD-TYPE
  CLUS_1             1              79
  CLUS_2             0              90
  CLUS_3             2             175
  CLUS_4             0             138
  CLUS_5             0              90
  CLUS_6             0              91
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HNF1B MUTATED        1      0      2
  HNF1B WILD-TYPE    213    148    294
D65V7, multiclass
        clus
vv       HNF1B MUTATED HNF1B WILD-TYPE
  CLUS_1             1             213
  CLUS_2             0             148
  CLUS_3             2             294
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HNF1B MUTATED        1      2      0
  HNF1B WILD-TYPE     71    474    110
D65V8, multiclass
        clus
vv       HNF1B MUTATED HNF1B WILD-TYPE
  CLUS_1             1              71
  CLUS_2             2             474
  CLUS_3             0             110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HNF1B MUTATED        0      1      0      1
  HNF1B WILD-TYPE     76     59     42     98
D65V9, multiclass
[1] "Remove cluster labels:" "HNF1B MUTATED"         
clus
  HNF1B MUTATED HNF1B WILD-TYPE 
              2             275 
     TCGA-A3-3317      TCGA-A3-3358      TCGA-A3-3387      TCGA-A4-7286 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-A4-7287      TCGA-A4-7288      TCGA-A4-7585      TCGA-A4-7734 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-A4-7828      TCGA-A4-7915      TCGA-A4-7996      TCGA-A4-7997 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-A4-8098      TCGA-A4-8310      TCGA-A4-8312      TCGA-A4-8515 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-A4-8517      TCGA-A4-8518      TCGA-A4-8630      TCGA-A4-A57E 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-A4-A5XZ      TCGA-A4-A5Y0      TCGA-A4-A5Y1      TCGA-AK-3440 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AK-3458      TCGA-AK-3465      TCGA-AL-3466      TCGA-AL-3472 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AL-3473      TCGA-AL-7173      TCGA-AT-A5NU      TCGA-B0-4700 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-B0-4706      TCGA-B0-4710      TCGA-B0-4712      TCGA-B0-4810 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-B0-4811      TCGA-B0-4836      TCGA-B0-4837      TCGA-B0-4852 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-B0-5080      TCGA-B0-5085      TCGA-B0-5088      TCGA-B0-5399 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-B0-5691      TCGA-B0-5692      TCGA-B0-5693      TCGA-B0-5695 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-B0-5696      TCGA-B0-5699      TCGA-B0-5702      TCGA-B0-5705 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-B0-5709      TCGA-B1-5398      TCGA-B1-A47N      TCGA-B1-A654 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-B1-A656      TCGA-B1-A657      TCGA-B2-3923      TCGA-B2-3924 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-B2-5633      TCGA-B2-5635      TCGA-B3-3925      TCGA-B3-4104 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-B3-8121      TCGA-B4-5377      TCGA-B4-5836      TCGA-B8-4621 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-B8-5545      TCGA-B8-5550      TCGA-B8-5551      TCGA-B8-5552 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-B8-5553      TCGA-B9-4115      TCGA-B9-4117      TCGA-B9-5156 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-B9-A44B      TCGA-B9-A5W9      TCGA-B9-A69E      TCGA-BP-4173 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-BP-4340      TCGA-BP-4761      TCGA-BP-4770      TCGA-BP-4787 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-BP-4789      TCGA-BP-4790      TCGA-BP-4804      TCGA-BP-4807 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-BP-4961      TCGA-BP-4967      TCGA-BP-4968      TCGA-BP-4970 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-BP-4974      TCGA-BP-4976      TCGA-BP-4981      TCGA-BP-4982 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-BP-4985      TCGA-BP-4988      TCGA-BP-4989      TCGA-BP-4992 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-BP-4995      TCGA-BP-4998      TCGA-BP-5001      TCGA-BP-5008 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-BP-5009      TCGA-BQ-5876      TCGA-BQ-5877      TCGA-BQ-5878 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-BQ-5879      TCGA-BQ-5880      TCGA-BQ-5881      TCGA-BQ-5882 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-BQ-5883      TCGA-BQ-5884      TCGA-BQ-5886      TCGA-BQ-5887 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-BQ-5888      TCGA-BQ-5889      TCGA-BQ-5890      TCGA-BQ-5891 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-BQ-5892      TCGA-BQ-5893      TCGA-BQ-5894      TCGA-BQ-7044 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-BQ-7045      TCGA-BQ-7046      TCGA-BQ-7048      TCGA-BQ-7050 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-BQ-7051      TCGA-BQ-7053      TCGA-BQ-7055      TCGA-BQ-7058 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-BQ-7059      TCGA-BQ-7060      TCGA-BQ-7061      TCGA-BQ-7062 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-CJ-4870      TCGA-CJ-4875      TCGA-CJ-4876      TCGA-CJ-4878 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-CJ-4881      TCGA-CJ-4887      TCGA-CJ-4889      TCGA-CJ-4890 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-CJ-4895      TCGA-CJ-4900      TCGA-CJ-5671      TCGA-CJ-5675 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-CJ-5676      TCGA-CJ-5681      TCGA-CJ-5683      TCGA-CJ-5686 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-CJ-6031      TCGA-CJ-6032      TCGA-CW-5585      TCGA-CW-5589 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-CW-6087      TCGA-CZ-4854      TCGA-CZ-4857      TCGA-CZ-4858 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-CZ-5453      TCGA-CZ-5454      TCGA-CZ-5455      TCGA-CZ-5457 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-CZ-5459      TCGA-CZ-5462      TCGA-CZ-5463      TCGA-CZ-5466 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-CZ-5467      TCGA-CZ-5469      TCGA-CZ-5470      TCGA-CZ-5989 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-DV-5565      TCGA-DV-5566      TCGA-DV-5569      TCGA-DW-5560 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-DW-5561      TCGA-DW-7834      TCGA-DW-7837      TCGA-DW-7838 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-DW-7839      TCGA-DW-7840      TCGA-DW-7842      TCGA-DZ-6131 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-DZ-6132      TCGA-DZ-6133      TCGA-DZ-6134      TCGA-DZ-6135 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-EU-5904      TCGA-EV-5901      TCGA-EV-5902      TCGA-EV-5903 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-F9-A4JJ      TCGA-G7-6789      TCGA-G7-6790      TCGA-G7-6792 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-G7-6793      TCGA-G7-6795      TCGA-G7-6796      TCGA-G7-7501 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-G7-7502      TCGA-G7-A4TM      TCGA-GL-6846      TCGA-GL-7773 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-GL-7966      TCGA-GL-8500      TCGA-GL-A4EM      TCGA-GL-A59T 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-HE-7128      TCGA-HE-7130      TCGA-HE-A5NJ      TCGA-IA-A40U 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-IA-A40X      TCGA-IA-A40Y      TCGA-IZ-8195      TCGA-IZ-8196 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-IZ-A6M9      TCGA-J7-6720      TCGA-J7-8537      TCGA-KL-8323 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-KL-8324      TCGA-KL-8327      TCGA-KL-8328      TCGA-KL-8331 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-KL-8332      TCGA-KL-8333      TCGA-KL-8334      TCGA-KL-8335 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-KL-8336      TCGA-KL-8338      TCGA-KL-8339      TCGA-KL-8340 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-KL-8341      TCGA-KL-8342      TCGA-KL-8343      TCGA-KL-8344 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-KL-8345      TCGA-KM-8438      TCGA-KM-8439      TCGA-KM-8441 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-KM-8442      TCGA-KM-8639      TCGA-KN-8418      TCGA-KN-8419 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-KN-8422      TCGA-KN-8423      TCGA-KN-8424      TCGA-KN-8426 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-KN-8427      TCGA-KN-8428      TCGA-KN-8429      TCGA-KN-8430 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-KN-8432      TCGA-KN-8433      TCGA-KN-8434      TCGA-KN-8436 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-KN-8437      TCGA-KO-8404      TCGA-KO-8405      TCGA-KO-8408 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-KO-8409      TCGA-KO-8410      TCGA-KO-8413      TCGA-KO-8415 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-KO-8416      TCGA-KO-8417      TCGA-KV-A6GD      TCGA-KV-A6GE 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-P4-A5E6      TCGA-P4-A5E7      TCGA-P4-A5E8      TCGA-P4-A5EA 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-PJ-A5Z8      TCGA-PJ-A5Z9      TCGA-Q2-A5QZ 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HNF1B MUTATED        0      0      0      1      1
  HNF1B WILD-TYPE     26     43     62     99     45
D65V10, multiclass
[1] "Remove cluster labels:" "HNF1B MUTATED"         
clus
  HNF1B MUTATED HNF1B WILD-TYPE 
              2             275 
     TCGA-A3-3317      TCGA-A3-3358      TCGA-A3-3387      TCGA-A4-7286 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-A4-7287      TCGA-A4-7288      TCGA-A4-7585      TCGA-A4-7734 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-A4-7828      TCGA-A4-7915      TCGA-A4-7996      TCGA-A4-7997 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-A4-8098      TCGA-A4-8310      TCGA-A4-8312      TCGA-A4-8515 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-A4-8517      TCGA-A4-8518      TCGA-A4-8630      TCGA-A4-A57E 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-A4-A5XZ      TCGA-A4-A5Y0      TCGA-A4-A5Y1      TCGA-AK-3440 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AK-3458      TCGA-AK-3465      TCGA-AL-3466      TCGA-AL-3472 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AL-3473      TCGA-AL-7173      TCGA-AT-A5NU      TCGA-B0-4700 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-B0-4706      TCGA-B0-4710      TCGA-B0-4712      TCGA-B0-4810 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-B0-4811      TCGA-B0-4836      TCGA-B0-4837      TCGA-B0-4852 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-B0-5080      TCGA-B0-5085      TCGA-B0-5088      TCGA-B0-5399 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-B0-5691      TCGA-B0-5692      TCGA-B0-5693      TCGA-B0-5695 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-B0-5696      TCGA-B0-5699      TCGA-B0-5702      TCGA-B0-5705 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-B0-5709      TCGA-B1-5398      TCGA-B1-A47N      TCGA-B1-A654 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-B1-A656      TCGA-B1-A657      TCGA-B2-3923      TCGA-B2-3924 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-B2-5633      TCGA-B2-5635      TCGA-B3-3925      TCGA-B3-4104 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-B3-8121      TCGA-B4-5377      TCGA-B4-5836      TCGA-B8-4621 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-B8-5545      TCGA-B8-5550      TCGA-B8-5551      TCGA-B8-5552 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-B8-5553      TCGA-B9-4115      TCGA-B9-4117      TCGA-B9-5156 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-B9-A44B      TCGA-B9-A5W9      TCGA-B9-A69E      TCGA-BP-4173 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-BP-4340      TCGA-BP-4761      TCGA-BP-4770      TCGA-BP-4787 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-BP-4789      TCGA-BP-4790      TCGA-BP-4804      TCGA-BP-4807 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-BP-4961      TCGA-BP-4967      TCGA-BP-4968      TCGA-BP-4970 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-BP-4974      TCGA-BP-4976      TCGA-BP-4981      TCGA-BP-4982 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-BP-4985      TCGA-BP-4988      TCGA-BP-4989      TCGA-BP-4992 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-BP-4995      TCGA-BP-4998      TCGA-BP-5001      TCGA-BP-5008 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-BP-5009      TCGA-BQ-5876      TCGA-BQ-5877      TCGA-BQ-5878 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-BQ-5879      TCGA-BQ-5880      TCGA-BQ-5881      TCGA-BQ-5882 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-BQ-5883      TCGA-BQ-5884      TCGA-BQ-5886      TCGA-BQ-5887 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-BQ-5888      TCGA-BQ-5889      TCGA-BQ-5890      TCGA-BQ-5891 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-BQ-5892      TCGA-BQ-5893      TCGA-BQ-5894      TCGA-BQ-7044 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-BQ-7045      TCGA-BQ-7046      TCGA-BQ-7048      TCGA-BQ-7050 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-BQ-7051      TCGA-BQ-7053      TCGA-BQ-7055      TCGA-BQ-7058 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-BQ-7059      TCGA-BQ-7060      TCGA-BQ-7061      TCGA-BQ-7062 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-CJ-4870      TCGA-CJ-4875      TCGA-CJ-4876      TCGA-CJ-4878 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-CJ-4881      TCGA-CJ-4887      TCGA-CJ-4889      TCGA-CJ-4890 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-CJ-4895      TCGA-CJ-4900      TCGA-CJ-5671      TCGA-CJ-5675 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-CJ-5676      TCGA-CJ-5681      TCGA-CJ-5683      TCGA-CJ-5686 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-CJ-6031      TCGA-CJ-6032      TCGA-CW-5585      TCGA-CW-5589 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-CW-6087      TCGA-CZ-4854      TCGA-CZ-4857      TCGA-CZ-4858 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-CZ-5453      TCGA-CZ-5454      TCGA-CZ-5455      TCGA-CZ-5457 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-CZ-5459      TCGA-CZ-5462      TCGA-CZ-5463      TCGA-CZ-5466 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-CZ-5467      TCGA-CZ-5469      TCGA-CZ-5470      TCGA-CZ-5989 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-DV-5565      TCGA-DV-5566      TCGA-DV-5569      TCGA-DW-5560 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-DW-5561      TCGA-DW-7834      TCGA-DW-7837      TCGA-DW-7838 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-DW-7839      TCGA-DW-7840      TCGA-DW-7842      TCGA-DZ-6131 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-DZ-6132      TCGA-DZ-6133      TCGA-DZ-6134      TCGA-DZ-6135 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-EU-5904      TCGA-EV-5901      TCGA-EV-5902      TCGA-EV-5903 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-F9-A4JJ      TCGA-G7-6789      TCGA-G7-6790      TCGA-G7-6792 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-G7-6793      TCGA-G7-6795      TCGA-G7-6796      TCGA-G7-7501 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-G7-7502      TCGA-G7-A4TM      TCGA-GL-6846      TCGA-GL-7773 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-GL-7966      TCGA-GL-8500      TCGA-GL-A4EM      TCGA-GL-A59T 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-HE-7128      TCGA-HE-7130      TCGA-HE-A5NJ      TCGA-IA-A40U 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-IA-A40X      TCGA-IA-A40Y      TCGA-IZ-8195      TCGA-IZ-8196 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-IZ-A6M9      TCGA-J7-6720      TCGA-J7-8537      TCGA-KL-8323 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-KL-8324      TCGA-KL-8327      TCGA-KL-8328      TCGA-KL-8331 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-KL-8332      TCGA-KL-8333      TCGA-KL-8334      TCGA-KL-8335 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-KL-8336      TCGA-KL-8338      TCGA-KL-8339      TCGA-KL-8340 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-KL-8341      TCGA-KL-8342      TCGA-KL-8343      TCGA-KL-8344 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-KL-8345      TCGA-KM-8438      TCGA-KM-8439      TCGA-KM-8441 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-KM-8442      TCGA-KM-8639      TCGA-KN-8418      TCGA-KN-8419 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-KN-8422      TCGA-KN-8423      TCGA-KN-8424      TCGA-KN-8426 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-KN-8427      TCGA-KN-8428      TCGA-KN-8429      TCGA-KN-8430 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-KN-8432      TCGA-KN-8433      TCGA-KN-8434      TCGA-KN-8436 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-KN-8437      TCGA-KO-8404      TCGA-KO-8405      TCGA-KO-8408 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-KO-8409      TCGA-KO-8410      TCGA-KO-8413      TCGA-KO-8415 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-KO-8416      TCGA-KO-8417      TCGA-KV-A6GD      TCGA-KV-A6GE 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-P4-A5E6      TCGA-P4-A5E7      TCGA-P4-A5E8      TCGA-P4-A5EA 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-PJ-A5Z8      TCGA-PJ-A5Z9      TCGA-Q2-A5QZ 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 

Clustering(66) Variable = OR2L8 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR2L8 MUTATED        0      0      0      0
  OR2L8 WILD-TYPE     21     17      9     14
D66V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OR2L8 MUTATED        0      0      0      0      0
  OR2L8 WILD-TYPE     11     17     14     10      9
D66V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR2L8 MUTATED        3      2      2
  OR2L8 WILD-TYPE    177    240    241
D66V3, multiclass
        clus
vv       OR2L8 MUTATED OR2L8 WILD-TYPE
  CLUS_1             3             177
  CLUS_2             2             240
  CLUS_3             2             241
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR2L8 MUTATED        1      3      3
  OR2L8 WILD-TYPE    102    252    116
D66V4, multiclass
        clus
vv       OR2L8 MUTATED OR2L8 WILD-TYPE
  CLUS_1             1             102
  CLUS_2             3             252
  CLUS_3             3             116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR2L8 MUTATED        1      1      2      3
  OR2L8 WILD-TYPE     97    173    243    146
D66V5, multiclass
        clus
vv       OR2L8 MUTATED OR2L8 WILD-TYPE
  CLUS_1             1              97
  CLUS_2             1             173
  CLUS_3             2             243
  CLUS_4             3             146
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  OR2L8 MUTATED        0      1      0      1      2      3
  OR2L8 WILD-TYPE     80     89    177    137     88     88
D66V6, multiclass
        clus
vv       OR2L8 MUTATED OR2L8 WILD-TYPE
  CLUS_1             0              80
  CLUS_2             1              89
  CLUS_3             0             177
  CLUS_4             1             137
  CLUS_5             2              88
  CLUS_6             3              88
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR2L8 MUTATED        2      3      2
  OR2L8 WILD-TYPE    212    145    294
D66V7, multiclass
        clus
vv       OR2L8 MUTATED OR2L8 WILD-TYPE
  CLUS_1             2             212
  CLUS_2             3             145
  CLUS_3             2             294
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR2L8 MUTATED        0      5      2
  OR2L8 WILD-TYPE     72    471    108
D66V8, multiclass
        clus
vv       OR2L8 MUTATED OR2L8 WILD-TYPE
  CLUS_1             0              72
  CLUS_2             5             471
  CLUS_3             2             108
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR2L8 MUTATED        2      0      2      0
  OR2L8 WILD-TYPE     74     60     40     99
D66V9, multiclass
        clus
vv       OR2L8 MUTATED OR2L8 WILD-TYPE
  CLUS_1             2              74
  CLUS_2             0              60
  CLUS_3             2              40
  CLUS_4             0              99
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OR2L8 MUTATED        1      1      2      0      0
  OR2L8 WILD-TYPE     25     42     60    100     46
D66V10, multiclass
        clus
vv       OR2L8 MUTATED OR2L8 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             1              42
  CLUS_3             2              60
  CLUS_4             0             100
  CLUS_5             0              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(67) Variable = IDUA MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IDUA MUTATED        0      0      0      0
  IDUA WILD-TYPE     21     17      9     14
D67V1, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IDUA MUTATED        0      0      0      0      0
  IDUA WILD-TYPE     11     17     14     10      9
D67V2, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IDUA MUTATED        1      3      1
  IDUA WILD-TYPE    179    239    242
D67V3, multiclass
        clus
vv       IDUA MUTATED IDUA WILD-TYPE
  CLUS_1            1            179
  CLUS_2            3            239
  CLUS_3            1            242
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IDUA MUTATED        1      1      3
  IDUA WILD-TYPE    102    254    116
D67V4, multiclass
        clus
vv       IDUA MUTATED IDUA WILD-TYPE
  CLUS_1            1            102
  CLUS_2            1            254
  CLUS_3            3            116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IDUA MUTATED        1      0      0      4
  IDUA WILD-TYPE     97    174    245    145
D67V5, multiclass
        clus
vv       IDUA MUTATED IDUA WILD-TYPE
  CLUS_1            1             97
  CLUS_2            0            174
  CLUS_3            0            245
  CLUS_4            4            145
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  IDUA MUTATED        1      3      0      0      0      1
  IDUA WILD-TYPE     79     87    177    138     90     90
D67V6, multiclass
        clus
vv       IDUA MUTATED IDUA WILD-TYPE
  CLUS_1            1             79
  CLUS_2            3             87
  CLUS_3            0            177
  CLUS_4            0            138
  CLUS_5            0             90
  CLUS_6            1             90
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IDUA MUTATED        4      1      0
  IDUA WILD-TYPE    210    147    296
D67V7, multiclass
        clus
vv       IDUA MUTATED IDUA WILD-TYPE
  CLUS_1            4            210
  CLUS_2            1            147
  CLUS_3            0            296
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IDUA MUTATED        0      2      3
  IDUA WILD-TYPE     72    474    107
D67V8, multiclass
        clus
vv       IDUA MUTATED IDUA WILD-TYPE
  CLUS_1            0             72
  CLUS_2            2            474
  CLUS_3            3            107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IDUA MUTATED        2      1      1      0
  IDUA WILD-TYPE     74     59     41     99
D67V9, multiclass
        clus
vv       IDUA MUTATED IDUA WILD-TYPE
  CLUS_1            2             74
  CLUS_2            1             59
  CLUS_3            1             41
  CLUS_4            0             99
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IDUA MUTATED        1      1      2      0      0
  IDUA WILD-TYPE     25     42     60    100     46
D67V10, multiclass
        clus
vv       IDUA MUTATED IDUA WILD-TYPE
  CLUS_1            1             25
  CLUS_2            1             42
  CLUS_3            2             60
  CLUS_4            0            100
  CLUS_5            0             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(68) Variable = ZC3H18 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZC3H18 MUTATED        0      0      0      2
  ZC3H18 WILD-TYPE     21     17      9     12
D68V1, multiclass
[1] "Remove cluster labels:" "ZC3H18 MUTATED"        
clus
  ZC3H18 MUTATED ZC3H18 WILD-TYPE 
               2               59 
      TCGA-A3-3311       TCGA-A3-3316       TCGA-A3-3317       TCGA-A3-3322 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-A3-3323       TCGA-A3-3326       TCGA-A3-3331       TCGA-A3-3347 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-A3-3349       TCGA-A3-3362       TCGA-A3-3363       TCGA-A3-3365 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-A3-3374       TCGA-A3-3380       TCGA-A3-3383       TCGA-AK-3427 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-AK-3440       TCGA-AK-3443       TCGA-AK-3453       TCGA-AK-3455 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-AK-3456       TCGA-AK-3465       TCGA-AL-3466       TCGA-AL-3472 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-AL-3473       TCGA-AS-3777       TCGA-AS-3778       TCGA-B2-3923 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-B2-3924       TCGA-B2-4098       TCGA-B2-4099       TCGA-B3-3925 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-B3-3926       TCGA-B3-4103       TCGA-B3-4104       TCGA-B8-4143 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-B8-4148       TCGA-B8-4151       TCGA-B8-4154       TCGA-B8-4619 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-B8-4620       TCGA-B9-4113       TCGA-B9-4114       TCGA-B9-4115 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-B9-4117       TCGA-BP-4161       TCGA-BP-4162       TCGA-BP-4163 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-BP-4164       TCGA-BP-4167       TCGA-CJ-4634       TCGA-CJ-4636 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-CJ-4637       TCGA-CJ-4638       TCGA-CJ-4639       TCGA-CJ-4640 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-CJ-4641       TCGA-CJ-4643       TCGA-CJ-4644 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZC3H18 MUTATED        0      0      2      0      0
  ZC3H18 WILD-TYPE     11     17     12     10      9
D68V2, multiclass
[1] "Remove cluster labels:" "ZC3H18 MUTATED"        
clus
  ZC3H18 MUTATED ZC3H18 WILD-TYPE 
               2               59 
      TCGA-A3-3311       TCGA-A3-3316       TCGA-A3-3317       TCGA-A3-3322 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-A3-3323       TCGA-A3-3326       TCGA-A3-3331       TCGA-A3-3347 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-A3-3349       TCGA-A3-3362       TCGA-A3-3363       TCGA-A3-3365 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-A3-3374       TCGA-A3-3380       TCGA-A3-3383       TCGA-AK-3427 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-AK-3440       TCGA-AK-3443       TCGA-AK-3453       TCGA-AK-3455 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-AK-3456       TCGA-AK-3465       TCGA-AL-3466       TCGA-AL-3472 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-AL-3473       TCGA-AS-3777       TCGA-AS-3778       TCGA-B2-3923 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-B2-3924       TCGA-B2-4098       TCGA-B2-4099       TCGA-B3-3925 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-B3-3926       TCGA-B3-4103       TCGA-B3-4104       TCGA-B8-4143 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-B8-4148       TCGA-B8-4151       TCGA-B8-4154       TCGA-B8-4619 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-B8-4620       TCGA-B9-4113       TCGA-B9-4114       TCGA-B9-4115 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-B9-4117       TCGA-BP-4161       TCGA-BP-4162       TCGA-BP-4163 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-BP-4164       TCGA-BP-4167       TCGA-CJ-4634       TCGA-CJ-4636 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-CJ-4637       TCGA-CJ-4638       TCGA-CJ-4639       TCGA-CJ-4640 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-CJ-4641       TCGA-CJ-4643       TCGA-CJ-4644 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZC3H18 MUTATED        1      2      3
  ZC3H18 WILD-TYPE    179    240    240
D68V3, multiclass
        clus
vv       ZC3H18 MUTATED ZC3H18 WILD-TYPE
  CLUS_1              1              179
  CLUS_2              2              240
  CLUS_3              3              240
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZC3H18 MUTATED        0      3      0
  ZC3H18 WILD-TYPE    103    252    119
D68V4, multiclass
        clus
vv       ZC3H18 MUTATED ZC3H18 WILD-TYPE
  CLUS_1              0              103
  CLUS_2              3              252
  CLUS_3              0              119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZC3H18 MUTATED        0      2      2      2
  ZC3H18 WILD-TYPE     98    172    243    147
D68V5, multiclass
        clus
vv       ZC3H18 MUTATED ZC3H18 WILD-TYPE
  CLUS_1              0               98
  CLUS_2              2              172
  CLUS_3              2              243
  CLUS_4              2              147
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZC3H18 MUTATED        0      1      2      1      1      1
  ZC3H18 WILD-TYPE     80     89    175    137     89     90
D68V6, multiclass
        clus
vv       ZC3H18 MUTATED ZC3H18 WILD-TYPE
  CLUS_1              0               80
  CLUS_2              1               89
  CLUS_3              2              175
  CLUS_4              1              137
  CLUS_5              1               89
  CLUS_6              1               90
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZC3H18 MUTATED        2      2      2
  ZC3H18 WILD-TYPE    212    146    294
D68V7, multiclass
        clus
vv       ZC3H18 MUTATED ZC3H18 WILD-TYPE
  CLUS_1              2              212
  CLUS_2              2              146
  CLUS_3              2              294
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZC3H18 MUTATED        0      4      2
  ZC3H18 WILD-TYPE     72    472    108
D68V8, multiclass
        clus
vv       ZC3H18 MUTATED ZC3H18 WILD-TYPE
  CLUS_1              0               72
  CLUS_2              4              472
  CLUS_3              2              108
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZC3H18 MUTATED        0      0      0      2
  ZC3H18 WILD-TYPE     76     60     42     97
D68V9, multiclass
[1] "Remove cluster labels:" "ZC3H18 MUTATED"        
clus
  ZC3H18 MUTATED ZC3H18 WILD-TYPE 
               2              275 
      TCGA-A3-3317       TCGA-A3-3358       TCGA-A4-7286       TCGA-A4-7287 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-A4-7288       TCGA-A4-7585       TCGA-A4-7734       TCGA-A4-7828 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-A4-7915       TCGA-A4-7996       TCGA-A4-7997       TCGA-A4-8098 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-A4-8310       TCGA-A4-8312       TCGA-A4-8515       TCGA-A4-8517 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-A4-8518       TCGA-A4-8630       TCGA-A4-A57E       TCGA-A4-A5XZ 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-A4-A5Y0       TCGA-A4-A5Y1       TCGA-AK-3440       TCGA-AK-3458 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-AK-3465       TCGA-AL-3466       TCGA-AL-3472       TCGA-AL-3473 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-AL-7173       TCGA-AT-A5NU       TCGA-B0-4700       TCGA-B0-4706 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-B0-4710       TCGA-B0-4712       TCGA-B0-4810       TCGA-B0-4811 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-B0-4836       TCGA-B0-4837       TCGA-B0-4852       TCGA-B0-5080 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-B0-5085       TCGA-B0-5088       TCGA-B0-5399       TCGA-B0-5691 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-B0-5692       TCGA-B0-5694       TCGA-B0-5695       TCGA-B0-5696 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-B0-5699       TCGA-B0-5702       TCGA-B0-5705       TCGA-B0-5709 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-B1-5398       TCGA-B1-A47N       TCGA-B1-A654       TCGA-B1-A656 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-B1-A657       TCGA-B2-3923       TCGA-B2-3924       TCGA-B2-5633 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-B2-5635       TCGA-B3-3925       TCGA-B3-4104       TCGA-B3-8121 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-B4-5377       TCGA-B4-5836       TCGA-B8-4621       TCGA-B8-5545 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-B8-5550       TCGA-B8-5551       TCGA-B8-5552       TCGA-B8-5553 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-B9-4115       TCGA-B9-4117       TCGA-B9-5156       TCGA-B9-A44B 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-B9-A5W9       TCGA-B9-A69E       TCGA-BP-4173       TCGA-BP-4340 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-BP-4761       TCGA-BP-4770       TCGA-BP-4787       TCGA-BP-4789 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-BP-4790       TCGA-BP-4804       TCGA-BP-4807       TCGA-BP-4961 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-BP-4967       TCGA-BP-4968       TCGA-BP-4970       TCGA-BP-4974 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-BP-4976       TCGA-BP-4981       TCGA-BP-4982       TCGA-BP-4985 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-BP-4988       TCGA-BP-4989       TCGA-BP-4992       TCGA-BP-4995 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-BP-4998       TCGA-BP-5001       TCGA-BP-5008       TCGA-BP-5009 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-BQ-5876       TCGA-BQ-5877       TCGA-BQ-5878       TCGA-BQ-5879 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-BQ-5880       TCGA-BQ-5881       TCGA-BQ-5882       TCGA-BQ-5883 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-BQ-5884       TCGA-BQ-5886       TCGA-BQ-5887       TCGA-BQ-5888 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-BQ-5889       TCGA-BQ-5890       TCGA-BQ-5891       TCGA-BQ-5892 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-BQ-5893       TCGA-BQ-5894       TCGA-BQ-7044       TCGA-BQ-7045 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-BQ-7046       TCGA-BQ-7048       TCGA-BQ-7050       TCGA-BQ-7051 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-BQ-7053       TCGA-BQ-7055       TCGA-BQ-7058       TCGA-BQ-7059 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-BQ-7060       TCGA-BQ-7061       TCGA-BQ-7062       TCGA-CJ-4870 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-CJ-4875       TCGA-CJ-4876       TCGA-CJ-4878       TCGA-CJ-4881 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-CJ-4887       TCGA-CJ-4889       TCGA-CJ-4890       TCGA-CJ-4895 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-CJ-4900       TCGA-CJ-5671       TCGA-CJ-5675       TCGA-CJ-5676 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-CJ-5681       TCGA-CJ-5683       TCGA-CJ-5686       TCGA-CJ-6031 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-CJ-6032       TCGA-CW-5585       TCGA-CW-5589       TCGA-CW-6087 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-CZ-4854       TCGA-CZ-4857       TCGA-CZ-4858       TCGA-CZ-5453 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-CZ-5454       TCGA-CZ-5455       TCGA-CZ-5457       TCGA-CZ-5459 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-CZ-5462       TCGA-CZ-5463       TCGA-CZ-5466       TCGA-CZ-5467 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-CZ-5469       TCGA-CZ-5470       TCGA-CZ-5989       TCGA-DV-5565 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-DV-5566       TCGA-DV-5569       TCGA-DW-5560       TCGA-DW-5561 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-DW-7834       TCGA-DW-7837       TCGA-DW-7838       TCGA-DW-7839 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-DW-7840       TCGA-DW-7842       TCGA-DZ-6131       TCGA-DZ-6132 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-DZ-6133       TCGA-DZ-6134       TCGA-DZ-6135       TCGA-EU-5904 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-EV-5901       TCGA-EV-5902       TCGA-EV-5903       TCGA-F9-A4JJ 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-G7-6789       TCGA-G7-6790       TCGA-G7-6792       TCGA-G7-6793 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-G7-6795       TCGA-G7-6796       TCGA-G7-7501       TCGA-G7-7502 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-G7-A4TM       TCGA-GL-6846       TCGA-GL-7773       TCGA-GL-7966 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-GL-8500       TCGA-GL-A4EM       TCGA-GL-A59T       TCGA-HE-7128 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-HE-7130       TCGA-HE-A5NJ       TCGA-IA-A40U       TCGA-IA-A40X 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-IA-A40Y       TCGA-IZ-8195       TCGA-IZ-8196       TCGA-IZ-A6M9 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-J7-6720       TCGA-J7-8537       TCGA-KL-8323       TCGA-KL-8324 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-KL-8327       TCGA-KL-8328       TCGA-KL-8331       TCGA-KL-8332 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-KL-8333       TCGA-KL-8334       TCGA-KL-8335       TCGA-KL-8336 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-KL-8338       TCGA-KL-8339       TCGA-KL-8340       TCGA-KL-8341 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-KL-8342       TCGA-KL-8343       TCGA-KL-8344       TCGA-KL-8345 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-KM-8438       TCGA-KM-8439       TCGA-KM-8441       TCGA-KM-8442 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-KM-8639       TCGA-KN-8418       TCGA-KN-8419       TCGA-KN-8422 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-KN-8423       TCGA-KN-8424       TCGA-KN-8426       TCGA-KN-8427 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-KN-8428       TCGA-KN-8429       TCGA-KN-8430       TCGA-KN-8431 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-KN-8432       TCGA-KN-8433       TCGA-KN-8434       TCGA-KN-8436 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-KN-8437       TCGA-KO-8404       TCGA-KO-8405       TCGA-KO-8408 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-KO-8409       TCGA-KO-8410       TCGA-KO-8413       TCGA-KO-8415 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-KO-8416       TCGA-KO-8417       TCGA-KV-A6GD       TCGA-KV-A6GE 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-P4-A5E6       TCGA-P4-A5E7       TCGA-P4-A5E8       TCGA-P4-A5EA 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-PJ-A5Z8       TCGA-PJ-A5Z9       TCGA-Q2-A5QZ 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZC3H18 MUTATED        0      0      0      2      0
  ZC3H18 WILD-TYPE     26     43     62     98     46
D68V10, multiclass
[1] "Remove cluster labels:" "ZC3H18 MUTATED"        
clus
  ZC3H18 MUTATED ZC3H18 WILD-TYPE 
               2              275 
      TCGA-A3-3317       TCGA-A3-3358       TCGA-A4-7286       TCGA-A4-7287 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-A4-7288       TCGA-A4-7585       TCGA-A4-7734       TCGA-A4-7828 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-A4-7915       TCGA-A4-7996       TCGA-A4-7997       TCGA-A4-8098 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-A4-8310       TCGA-A4-8312       TCGA-A4-8515       TCGA-A4-8517 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-A4-8518       TCGA-A4-8630       TCGA-A4-A57E       TCGA-A4-A5XZ 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-A4-A5Y0       TCGA-A4-A5Y1       TCGA-AK-3440       TCGA-AK-3458 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-AK-3465       TCGA-AL-3466       TCGA-AL-3472       TCGA-AL-3473 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-AL-7173       TCGA-AT-A5NU       TCGA-B0-4700       TCGA-B0-4706 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-B0-4710       TCGA-B0-4712       TCGA-B0-4810       TCGA-B0-4811 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-B0-4836       TCGA-B0-4837       TCGA-B0-4852       TCGA-B0-5080 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-B0-5085       TCGA-B0-5088       TCGA-B0-5399       TCGA-B0-5691 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-B0-5692       TCGA-B0-5694       TCGA-B0-5695       TCGA-B0-5696 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-B0-5699       TCGA-B0-5702       TCGA-B0-5705       TCGA-B0-5709 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-B1-5398       TCGA-B1-A47N       TCGA-B1-A654       TCGA-B1-A656 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-B1-A657       TCGA-B2-3923       TCGA-B2-3924       TCGA-B2-5633 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-B2-5635       TCGA-B3-3925       TCGA-B3-4104       TCGA-B3-8121 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-B4-5377       TCGA-B4-5836       TCGA-B8-4621       TCGA-B8-5545 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-B8-5550       TCGA-B8-5551       TCGA-B8-5552       TCGA-B8-5553 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-B9-4115       TCGA-B9-4117       TCGA-B9-5156       TCGA-B9-A44B 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-B9-A5W9       TCGA-B9-A69E       TCGA-BP-4173       TCGA-BP-4340 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-BP-4761       TCGA-BP-4770       TCGA-BP-4787       TCGA-BP-4789 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-BP-4790       TCGA-BP-4804       TCGA-BP-4807       TCGA-BP-4961 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-BP-4967       TCGA-BP-4968       TCGA-BP-4970       TCGA-BP-4974 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-BP-4976       TCGA-BP-4981       TCGA-BP-4982       TCGA-BP-4985 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-BP-4988       TCGA-BP-4989       TCGA-BP-4992       TCGA-BP-4995 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-BP-4998       TCGA-BP-5001       TCGA-BP-5008       TCGA-BP-5009 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-BQ-5876       TCGA-BQ-5877       TCGA-BQ-5878       TCGA-BQ-5879 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-BQ-5880       TCGA-BQ-5881       TCGA-BQ-5882       TCGA-BQ-5883 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-BQ-5884       TCGA-BQ-5886       TCGA-BQ-5887       TCGA-BQ-5888 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-BQ-5889       TCGA-BQ-5890       TCGA-BQ-5891       TCGA-BQ-5892 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-BQ-5893       TCGA-BQ-5894       TCGA-BQ-7044       TCGA-BQ-7045 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-BQ-7046       TCGA-BQ-7048       TCGA-BQ-7050       TCGA-BQ-7051 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-BQ-7053       TCGA-BQ-7055       TCGA-BQ-7058       TCGA-BQ-7059 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-BQ-7060       TCGA-BQ-7061       TCGA-BQ-7062       TCGA-CJ-4870 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-CJ-4875       TCGA-CJ-4876       TCGA-CJ-4878       TCGA-CJ-4881 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-CJ-4887       TCGA-CJ-4889       TCGA-CJ-4890       TCGA-CJ-4895 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-CJ-4900       TCGA-CJ-5671       TCGA-CJ-5675       TCGA-CJ-5676 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-CJ-5681       TCGA-CJ-5683       TCGA-CJ-5686       TCGA-CJ-6031 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-CJ-6032       TCGA-CW-5585       TCGA-CW-5589       TCGA-CW-6087 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-CZ-4854       TCGA-CZ-4857       TCGA-CZ-4858       TCGA-CZ-5453 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-CZ-5454       TCGA-CZ-5455       TCGA-CZ-5457       TCGA-CZ-5459 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-CZ-5462       TCGA-CZ-5463       TCGA-CZ-5466       TCGA-CZ-5467 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-CZ-5469       TCGA-CZ-5470       TCGA-CZ-5989       TCGA-DV-5565 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-DV-5566       TCGA-DV-5569       TCGA-DW-5560       TCGA-DW-5561 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-DW-7834       TCGA-DW-7837       TCGA-DW-7838       TCGA-DW-7839 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-DW-7840       TCGA-DW-7842       TCGA-DZ-6131       TCGA-DZ-6132 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-DZ-6133       TCGA-DZ-6134       TCGA-DZ-6135       TCGA-EU-5904 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-EV-5901       TCGA-EV-5902       TCGA-EV-5903       TCGA-F9-A4JJ 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-G7-6789       TCGA-G7-6790       TCGA-G7-6792       TCGA-G7-6793 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-G7-6795       TCGA-G7-6796       TCGA-G7-7501       TCGA-G7-7502 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-G7-A4TM       TCGA-GL-6846       TCGA-GL-7773       TCGA-GL-7966 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-GL-8500       TCGA-GL-A4EM       TCGA-GL-A59T       TCGA-HE-7128 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-HE-7130       TCGA-HE-A5NJ       TCGA-IA-A40U       TCGA-IA-A40X 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-IA-A40Y       TCGA-IZ-8195       TCGA-IZ-8196       TCGA-IZ-A6M9 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-J7-6720       TCGA-J7-8537       TCGA-KL-8323       TCGA-KL-8324 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-KL-8327       TCGA-KL-8328       TCGA-KL-8331       TCGA-KL-8332 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-KL-8333       TCGA-KL-8334       TCGA-KL-8335       TCGA-KL-8336 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-KL-8338       TCGA-KL-8339       TCGA-KL-8340       TCGA-KL-8341 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-KL-8342       TCGA-KL-8343       TCGA-KL-8344       TCGA-KL-8345 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-KM-8438       TCGA-KM-8439       TCGA-KM-8441       TCGA-KM-8442 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-KM-8639       TCGA-KN-8418       TCGA-KN-8419       TCGA-KN-8422 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-KN-8423       TCGA-KN-8424       TCGA-KN-8426       TCGA-KN-8427 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-KN-8428       TCGA-KN-8429       TCGA-KN-8430       TCGA-KN-8431 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-KN-8432       TCGA-KN-8433       TCGA-KN-8434       TCGA-KN-8436 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-KN-8437       TCGA-KO-8404       TCGA-KO-8405       TCGA-KO-8408 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-KO-8409       TCGA-KO-8410       TCGA-KO-8413       TCGA-KO-8415 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-KO-8416       TCGA-KO-8417       TCGA-KV-A6GD       TCGA-KV-A6GE 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-P4-A5E6       TCGA-P4-A5E7       TCGA-P4-A5E8       TCGA-P4-A5EA 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 
      TCGA-PJ-A5Z8       TCGA-PJ-A5Z9       TCGA-Q2-A5QZ 
"ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" "ZC3H18 WILD-TYPE" 

Clustering(69) Variable = GAPDHS MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GAPDHS MUTATED        0      0      0      0
  GAPDHS WILD-TYPE     21     17      9     14
D69V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GAPDHS MUTATED        0      0      0      0      0
  GAPDHS WILD-TYPE     11     17     14     10      9
D69V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GAPDHS MUTATED        1      1      3
  GAPDHS WILD-TYPE    179    241    240
D69V3, multiclass
        clus
vv       GAPDHS MUTATED GAPDHS WILD-TYPE
  CLUS_1              1              179
  CLUS_2              1              241
  CLUS_3              3              240
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GAPDHS MUTATED        2      1      2
  GAPDHS WILD-TYPE    101    254    117
D69V4, multiclass
        clus
vv       GAPDHS MUTATED GAPDHS WILD-TYPE
  CLUS_1              2              101
  CLUS_2              1              254
  CLUS_3              2              117
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GAPDHS MUTATED        1      0      1      3
  GAPDHS WILD-TYPE     97    174    244    146
D69V5, multiclass
        clus
vv       GAPDHS MUTATED GAPDHS WILD-TYPE
  CLUS_1              1               97
  CLUS_2              0              174
  CLUS_3              1              244
  CLUS_4              3              146
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GAPDHS MUTATED        1      3      0      0      1      0
  GAPDHS WILD-TYPE     79     87    177    138     89     91
D69V6, multiclass
        clus
vv       GAPDHS MUTATED GAPDHS WILD-TYPE
  CLUS_1              1               79
  CLUS_2              3               87
  CLUS_3              0              177
  CLUS_4              0              138
  CLUS_5              1               89
  CLUS_6              0               91
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GAPDHS MUTATED        4      0      1
  GAPDHS WILD-TYPE    210    148    295
D69V7, multiclass
        clus
vv       GAPDHS MUTATED GAPDHS WILD-TYPE
  CLUS_1              4              210
  CLUS_2              0              148
  CLUS_3              1              295
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GAPDHS MUTATED        1      3      1
  GAPDHS WILD-TYPE     71    473    109
D69V8, multiclass
        clus
vv       GAPDHS MUTATED GAPDHS WILD-TYPE
  CLUS_1              1               71
  CLUS_2              3              473
  CLUS_3              1              109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GAPDHS MUTATED        0      1      0      1
  GAPDHS WILD-TYPE     76     59     42     98
D69V9, multiclass
[1] "Remove cluster labels:" "GAPDHS MUTATED"        
clus
  GAPDHS MUTATED GAPDHS WILD-TYPE 
               2              275 
      TCGA-A3-3317       TCGA-A3-3358       TCGA-A3-3387       TCGA-A4-7286 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-A4-7287       TCGA-A4-7288       TCGA-A4-7585       TCGA-A4-7734 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-A4-7828       TCGA-A4-7915       TCGA-A4-7996       TCGA-A4-7997 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-A4-8098       TCGA-A4-8310       TCGA-A4-8312       TCGA-A4-8515 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-A4-8517       TCGA-A4-8518       TCGA-A4-8630       TCGA-A4-A57E 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-A4-A5XZ       TCGA-A4-A5Y0       TCGA-AK-3440       TCGA-AK-3458 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-AK-3465       TCGA-AL-3466       TCGA-AL-3472       TCGA-AL-3473 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-AL-7173       TCGA-AT-A5NU       TCGA-B0-4700       TCGA-B0-4706 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-B0-4710       TCGA-B0-4712       TCGA-B0-4810       TCGA-B0-4811 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-B0-4836       TCGA-B0-4837       TCGA-B0-4852       TCGA-B0-5080 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-B0-5085       TCGA-B0-5088       TCGA-B0-5399       TCGA-B0-5691 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-B0-5692       TCGA-B0-5693       TCGA-B0-5694       TCGA-B0-5695 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-B0-5696       TCGA-B0-5699       TCGA-B0-5702       TCGA-B0-5705 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-B0-5709       TCGA-B1-5398       TCGA-B1-A47N       TCGA-B1-A654 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-B1-A656       TCGA-B1-A657       TCGA-B2-3923       TCGA-B2-3924 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-B2-5633       TCGA-B2-5635       TCGA-B3-3925       TCGA-B3-4104 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-B3-8121       TCGA-B4-5377       TCGA-B4-5836       TCGA-B8-4621 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-B8-5545       TCGA-B8-5550       TCGA-B8-5551       TCGA-B8-5552 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-B8-5553       TCGA-B9-4115       TCGA-B9-4117       TCGA-B9-5156 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-B9-A44B       TCGA-B9-A5W9       TCGA-B9-A69E       TCGA-BP-4173 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-BP-4340       TCGA-BP-4761       TCGA-BP-4770       TCGA-BP-4787 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-BP-4789       TCGA-BP-4790       TCGA-BP-4804       TCGA-BP-4807 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-BP-4961       TCGA-BP-4967       TCGA-BP-4968       TCGA-BP-4970 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-BP-4974       TCGA-BP-4976       TCGA-BP-4981       TCGA-BP-4982 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-BP-4985       TCGA-BP-4988       TCGA-BP-4989       TCGA-BP-4992 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-BP-4995       TCGA-BP-4998       TCGA-BP-5001       TCGA-BP-5008 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-BP-5009       TCGA-BQ-5876       TCGA-BQ-5877       TCGA-BQ-5878 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-BQ-5879       TCGA-BQ-5880       TCGA-BQ-5881       TCGA-BQ-5882 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-BQ-5883       TCGA-BQ-5884       TCGA-BQ-5886       TCGA-BQ-5887 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-BQ-5888       TCGA-BQ-5889       TCGA-BQ-5890       TCGA-BQ-5891 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-BQ-5892       TCGA-BQ-5893       TCGA-BQ-5894       TCGA-BQ-7044 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-BQ-7045       TCGA-BQ-7046       TCGA-BQ-7048       TCGA-BQ-7050 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-BQ-7051       TCGA-BQ-7053       TCGA-BQ-7055       TCGA-BQ-7058 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-BQ-7059       TCGA-BQ-7060       TCGA-BQ-7061       TCGA-BQ-7062 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-CJ-4870       TCGA-CJ-4875       TCGA-CJ-4876       TCGA-CJ-4878 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-CJ-4881       TCGA-CJ-4887       TCGA-CJ-4889       TCGA-CJ-4890 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-CJ-4895       TCGA-CJ-4900       TCGA-CJ-5671       TCGA-CJ-5675 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-CJ-5676       TCGA-CJ-5681       TCGA-CJ-5683       TCGA-CJ-5686 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-CJ-6031       TCGA-CJ-6032       TCGA-CW-5585       TCGA-CW-5589 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-CW-6087       TCGA-CZ-4854       TCGA-CZ-4857       TCGA-CZ-4858 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-CZ-5453       TCGA-CZ-5454       TCGA-CZ-5455       TCGA-CZ-5457 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-CZ-5459       TCGA-CZ-5462       TCGA-CZ-5463       TCGA-CZ-5466 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-CZ-5467       TCGA-CZ-5469       TCGA-CZ-5470       TCGA-CZ-5989 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-DV-5565       TCGA-DV-5566       TCGA-DV-5569       TCGA-DW-5560 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-DW-5561       TCGA-DW-7834       TCGA-DW-7837       TCGA-DW-7838 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-DW-7839       TCGA-DW-7840       TCGA-DW-7842       TCGA-DZ-6131 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-DZ-6132       TCGA-DZ-6133       TCGA-DZ-6134       TCGA-DZ-6135 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-EU-5904       TCGA-EV-5901       TCGA-EV-5902       TCGA-EV-5903 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-F9-A4JJ       TCGA-G7-6789       TCGA-G7-6790       TCGA-G7-6792 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-G7-6793       TCGA-G7-6795       TCGA-G7-6796       TCGA-G7-7501 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-G7-7502       TCGA-G7-A4TM       TCGA-GL-6846       TCGA-GL-7773 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-GL-7966       TCGA-GL-8500       TCGA-GL-A4EM       TCGA-GL-A59T 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-HE-7128       TCGA-HE-7130       TCGA-HE-A5NJ       TCGA-IA-A40U 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-IA-A40X       TCGA-IA-A40Y       TCGA-IZ-8195       TCGA-IZ-8196 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-IZ-A6M9       TCGA-J7-6720       TCGA-J7-8537       TCGA-KL-8323 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-KL-8324       TCGA-KL-8327       TCGA-KL-8328       TCGA-KL-8331 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-KL-8332       TCGA-KL-8333       TCGA-KL-8334       TCGA-KL-8335 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-KL-8336       TCGA-KL-8338       TCGA-KL-8339       TCGA-KL-8340 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-KL-8341       TCGA-KL-8342       TCGA-KL-8343       TCGA-KL-8344 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-KL-8345       TCGA-KM-8438       TCGA-KM-8439       TCGA-KM-8441 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-KM-8442       TCGA-KM-8639       TCGA-KN-8418       TCGA-KN-8419 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-KN-8422       TCGA-KN-8424       TCGA-KN-8426       TCGA-KN-8427 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-KN-8428       TCGA-KN-8429       TCGA-KN-8430       TCGA-KN-8431 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-KN-8432       TCGA-KN-8433       TCGA-KN-8434       TCGA-KN-8436 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-KN-8437       TCGA-KO-8404       TCGA-KO-8405       TCGA-KO-8408 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-KO-8409       TCGA-KO-8410       TCGA-KO-8413       TCGA-KO-8415 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-KO-8416       TCGA-KO-8417       TCGA-KV-A6GD       TCGA-KV-A6GE 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-P4-A5E6       TCGA-P4-A5E7       TCGA-P4-A5E8       TCGA-P4-A5EA 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-PJ-A5Z8       TCGA-PJ-A5Z9       TCGA-Q2-A5QZ 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GAPDHS MUTATED        0      0      1      0      1
  GAPDHS WILD-TYPE     26     43     61    100     45
D69V10, multiclass
[1] "Remove cluster labels:" "GAPDHS MUTATED"        
clus
  GAPDHS MUTATED GAPDHS WILD-TYPE 
               2              275 
      TCGA-A3-3317       TCGA-A3-3358       TCGA-A3-3387       TCGA-A4-7286 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-A4-7287       TCGA-A4-7288       TCGA-A4-7585       TCGA-A4-7734 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-A4-7828       TCGA-A4-7915       TCGA-A4-7996       TCGA-A4-7997 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-A4-8098       TCGA-A4-8310       TCGA-A4-8312       TCGA-A4-8515 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-A4-8517       TCGA-A4-8518       TCGA-A4-8630       TCGA-A4-A57E 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-A4-A5XZ       TCGA-A4-A5Y0       TCGA-AK-3440       TCGA-AK-3458 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-AK-3465       TCGA-AL-3466       TCGA-AL-3472       TCGA-AL-3473 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-AL-7173       TCGA-AT-A5NU       TCGA-B0-4700       TCGA-B0-4706 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-B0-4710       TCGA-B0-4712       TCGA-B0-4810       TCGA-B0-4811 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-B0-4836       TCGA-B0-4837       TCGA-B0-4852       TCGA-B0-5080 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-B0-5085       TCGA-B0-5088       TCGA-B0-5399       TCGA-B0-5691 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-B0-5692       TCGA-B0-5693       TCGA-B0-5694       TCGA-B0-5695 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-B0-5696       TCGA-B0-5699       TCGA-B0-5702       TCGA-B0-5705 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-B0-5709       TCGA-B1-5398       TCGA-B1-A47N       TCGA-B1-A654 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-B1-A656       TCGA-B1-A657       TCGA-B2-3923       TCGA-B2-3924 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-B2-5633       TCGA-B2-5635       TCGA-B3-3925       TCGA-B3-4104 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-B3-8121       TCGA-B4-5377       TCGA-B4-5836       TCGA-B8-4621 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-B8-5545       TCGA-B8-5550       TCGA-B8-5551       TCGA-B8-5552 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-B8-5553       TCGA-B9-4115       TCGA-B9-4117       TCGA-B9-5156 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-B9-A44B       TCGA-B9-A5W9       TCGA-B9-A69E       TCGA-BP-4173 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-BP-4340       TCGA-BP-4761       TCGA-BP-4770       TCGA-BP-4787 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-BP-4789       TCGA-BP-4790       TCGA-BP-4804       TCGA-BP-4807 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-BP-4961       TCGA-BP-4967       TCGA-BP-4968       TCGA-BP-4970 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-BP-4974       TCGA-BP-4976       TCGA-BP-4981       TCGA-BP-4982 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-BP-4985       TCGA-BP-4988       TCGA-BP-4989       TCGA-BP-4992 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-BP-4995       TCGA-BP-4998       TCGA-BP-5001       TCGA-BP-5008 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-BP-5009       TCGA-BQ-5876       TCGA-BQ-5877       TCGA-BQ-5878 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-BQ-5879       TCGA-BQ-5880       TCGA-BQ-5881       TCGA-BQ-5882 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-BQ-5883       TCGA-BQ-5884       TCGA-BQ-5886       TCGA-BQ-5887 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-BQ-5888       TCGA-BQ-5889       TCGA-BQ-5890       TCGA-BQ-5891 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-BQ-5892       TCGA-BQ-5893       TCGA-BQ-5894       TCGA-BQ-7044 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-BQ-7045       TCGA-BQ-7046       TCGA-BQ-7048       TCGA-BQ-7050 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-BQ-7051       TCGA-BQ-7053       TCGA-BQ-7055       TCGA-BQ-7058 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-BQ-7059       TCGA-BQ-7060       TCGA-BQ-7061       TCGA-BQ-7062 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-CJ-4870       TCGA-CJ-4875       TCGA-CJ-4876       TCGA-CJ-4878 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-CJ-4881       TCGA-CJ-4887       TCGA-CJ-4889       TCGA-CJ-4890 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-CJ-4895       TCGA-CJ-4900       TCGA-CJ-5671       TCGA-CJ-5675 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-CJ-5676       TCGA-CJ-5681       TCGA-CJ-5683       TCGA-CJ-5686 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-CJ-6031       TCGA-CJ-6032       TCGA-CW-5585       TCGA-CW-5589 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-CW-6087       TCGA-CZ-4854       TCGA-CZ-4857       TCGA-CZ-4858 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-CZ-5453       TCGA-CZ-5454       TCGA-CZ-5455       TCGA-CZ-5457 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-CZ-5459       TCGA-CZ-5462       TCGA-CZ-5463       TCGA-CZ-5466 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-CZ-5467       TCGA-CZ-5469       TCGA-CZ-5470       TCGA-CZ-5989 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-DV-5565       TCGA-DV-5566       TCGA-DV-5569       TCGA-DW-5560 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-DW-5561       TCGA-DW-7834       TCGA-DW-7837       TCGA-DW-7838 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-DW-7839       TCGA-DW-7840       TCGA-DW-7842       TCGA-DZ-6131 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-DZ-6132       TCGA-DZ-6133       TCGA-DZ-6134       TCGA-DZ-6135 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-EU-5904       TCGA-EV-5901       TCGA-EV-5902       TCGA-EV-5903 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-F9-A4JJ       TCGA-G7-6789       TCGA-G7-6790       TCGA-G7-6792 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-G7-6793       TCGA-G7-6795       TCGA-G7-6796       TCGA-G7-7501 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-G7-7502       TCGA-G7-A4TM       TCGA-GL-6846       TCGA-GL-7773 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-GL-7966       TCGA-GL-8500       TCGA-GL-A4EM       TCGA-GL-A59T 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-HE-7128       TCGA-HE-7130       TCGA-HE-A5NJ       TCGA-IA-A40U 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-IA-A40X       TCGA-IA-A40Y       TCGA-IZ-8195       TCGA-IZ-8196 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-IZ-A6M9       TCGA-J7-6720       TCGA-J7-8537       TCGA-KL-8323 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-KL-8324       TCGA-KL-8327       TCGA-KL-8328       TCGA-KL-8331 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-KL-8332       TCGA-KL-8333       TCGA-KL-8334       TCGA-KL-8335 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-KL-8336       TCGA-KL-8338       TCGA-KL-8339       TCGA-KL-8340 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-KL-8341       TCGA-KL-8342       TCGA-KL-8343       TCGA-KL-8344 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-KL-8345       TCGA-KM-8438       TCGA-KM-8439       TCGA-KM-8441 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-KM-8442       TCGA-KM-8639       TCGA-KN-8418       TCGA-KN-8419 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-KN-8422       TCGA-KN-8424       TCGA-KN-8426       TCGA-KN-8427 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-KN-8428       TCGA-KN-8429       TCGA-KN-8430       TCGA-KN-8431 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-KN-8432       TCGA-KN-8433       TCGA-KN-8434       TCGA-KN-8436 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-KN-8437       TCGA-KO-8404       TCGA-KO-8405       TCGA-KO-8408 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-KO-8409       TCGA-KO-8410       TCGA-KO-8413       TCGA-KO-8415 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-KO-8416       TCGA-KO-8417       TCGA-KV-A6GD       TCGA-KV-A6GE 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-P4-A5E6       TCGA-P4-A5E7       TCGA-P4-A5E8       TCGA-P4-A5EA 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 
      TCGA-PJ-A5Z8       TCGA-PJ-A5Z9       TCGA-Q2-A5QZ 
"GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" "GAPDHS WILD-TYPE" 

Clustering(70) Variable = GPR137 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR137 MUTATED        0      0      0      0
  GPR137 WILD-TYPE     21     17      9     14
D70V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPR137 MUTATED        0      0      0      0      0
  GPR137 WILD-TYPE     11     17     14     10      9
D70V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GPR137 MUTATED        1      0      3
  GPR137 WILD-TYPE    179    242    240
D70V3, multiclass
        clus
vv       GPR137 MUTATED GPR137 WILD-TYPE
  CLUS_1              1              179
  CLUS_2              0              242
  CLUS_3              3              240
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GPR137 MUTATED        1      1      1
  GPR137 WILD-TYPE    102    254    118
D70V4, multiclass
        clus
vv       GPR137 MUTATED GPR137 WILD-TYPE
  CLUS_1              1              102
  CLUS_2              1              254
  CLUS_3              1              118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR137 MUTATED        1      2      0      1
  GPR137 WILD-TYPE     97    172    245    148
D70V5, multiclass
        clus
vv       GPR137 MUTATED GPR137 WILD-TYPE
  CLUS_1              1               97
  CLUS_2              2              172
  CLUS_3              0              245
  CLUS_4              1              148
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GPR137 MUTATED        1      0      0      2      0      1
  GPR137 WILD-TYPE     79     90    177    136     90     90
D70V6, multiclass
        clus
vv       GPR137 MUTATED GPR137 WILD-TYPE
  CLUS_1              1               79
  CLUS_2              0               90
  CLUS_3              0              177
  CLUS_4              2              136
  CLUS_5              0               90
  CLUS_6              1               90
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GPR137 MUTATED        2      2      0
  GPR137 WILD-TYPE    212    146    296
D70V7, multiclass
        clus
vv       GPR137 MUTATED GPR137 WILD-TYPE
  CLUS_1              2              212
  CLUS_2              2              146
  CLUS_3              0              296
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GPR137 MUTATED        1      2      1
  GPR137 WILD-TYPE     71    474    109
D70V8, multiclass
        clus
vv       GPR137 MUTATED GPR137 WILD-TYPE
  CLUS_1              1               71
  CLUS_2              2              474
  CLUS_3              1              109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR137 MUTATED        1      0      1      0
  GPR137 WILD-TYPE     75     60     41     99
D70V9, multiclass
[1] "Remove cluster labels:" "GPR137 MUTATED"        
clus
  GPR137 MUTATED GPR137 WILD-TYPE 
               2              275 
      TCGA-A3-3317       TCGA-A3-3358       TCGA-A3-3387       TCGA-A4-7286 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-A4-7287       TCGA-A4-7288       TCGA-A4-7585       TCGA-A4-7734 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-A4-7828       TCGA-A4-7915       TCGA-A4-7996       TCGA-A4-7997 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-A4-8098       TCGA-A4-8310       TCGA-A4-8312       TCGA-A4-8515 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-A4-8517       TCGA-A4-8518       TCGA-A4-8630       TCGA-A4-A57E 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-A4-A5XZ       TCGA-A4-A5Y0       TCGA-A4-A5Y1       TCGA-AK-3440 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-AK-3458       TCGA-AK-3465       TCGA-AL-3466       TCGA-AL-3472 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-AL-3473       TCGA-AL-7173       TCGA-AT-A5NU       TCGA-B0-4700 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-B0-4706       TCGA-B0-4710       TCGA-B0-4712       TCGA-B0-4810 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-B0-4811       TCGA-B0-4836       TCGA-B0-4837       TCGA-B0-4852 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-B0-5080       TCGA-B0-5085       TCGA-B0-5088       TCGA-B0-5399 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-B0-5691       TCGA-B0-5692       TCGA-B0-5693       TCGA-B0-5694 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-B0-5695       TCGA-B0-5696       TCGA-B0-5699       TCGA-B0-5702 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-B0-5705       TCGA-B0-5709       TCGA-B1-5398       TCGA-B1-A47N 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-B1-A654       TCGA-B1-A656       TCGA-B1-A657       TCGA-B2-3923 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-B2-3924       TCGA-B2-5633       TCGA-B2-5635       TCGA-B3-3925 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-B3-4104       TCGA-B3-8121       TCGA-B4-5377       TCGA-B4-5836 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-B8-4621       TCGA-B8-5545       TCGA-B8-5550       TCGA-B8-5551 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-B8-5552       TCGA-B8-5553       TCGA-B9-4115       TCGA-B9-4117 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-B9-5156       TCGA-B9-A44B       TCGA-B9-A5W9       TCGA-B9-A69E 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-BP-4173       TCGA-BP-4340       TCGA-BP-4761       TCGA-BP-4770 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-BP-4787       TCGA-BP-4789       TCGA-BP-4790       TCGA-BP-4804 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-BP-4807       TCGA-BP-4961       TCGA-BP-4967       TCGA-BP-4968 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-BP-4970       TCGA-BP-4974       TCGA-BP-4976       TCGA-BP-4981 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-BP-4982       TCGA-BP-4985       TCGA-BP-4988       TCGA-BP-4989 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-BP-4992       TCGA-BP-4995       TCGA-BP-4998       TCGA-BP-5001 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-BP-5008       TCGA-BP-5009       TCGA-BQ-5876       TCGA-BQ-5877 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-BQ-5878       TCGA-BQ-5879       TCGA-BQ-5880       TCGA-BQ-5881 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-BQ-5882       TCGA-BQ-5883       TCGA-BQ-5884       TCGA-BQ-5886 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-BQ-5887       TCGA-BQ-5888       TCGA-BQ-5889       TCGA-BQ-5890 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-BQ-5891       TCGA-BQ-5892       TCGA-BQ-5893       TCGA-BQ-5894 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-BQ-7044       TCGA-BQ-7045       TCGA-BQ-7046       TCGA-BQ-7048 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-BQ-7050       TCGA-BQ-7051       TCGA-BQ-7053       TCGA-BQ-7055 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-BQ-7058       TCGA-BQ-7059       TCGA-BQ-7060       TCGA-BQ-7061 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-BQ-7062       TCGA-CJ-4870       TCGA-CJ-4875       TCGA-CJ-4876 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-CJ-4878       TCGA-CJ-4881       TCGA-CJ-4887       TCGA-CJ-4889 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-CJ-4890       TCGA-CJ-4895       TCGA-CJ-4900       TCGA-CJ-5671 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-CJ-5675       TCGA-CJ-5676       TCGA-CJ-5681       TCGA-CJ-5683 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-CJ-5686       TCGA-CJ-6031       TCGA-CJ-6032       TCGA-CW-5585 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-CW-5589       TCGA-CW-6087       TCGA-CZ-4854       TCGA-CZ-4858 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-CZ-5453       TCGA-CZ-5454       TCGA-CZ-5455       TCGA-CZ-5457 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-CZ-5459       TCGA-CZ-5462       TCGA-CZ-5463       TCGA-CZ-5466 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-CZ-5467       TCGA-CZ-5469       TCGA-CZ-5470       TCGA-CZ-5989 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-DV-5565       TCGA-DV-5566       TCGA-DV-5569       TCGA-DW-5560 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-DW-5561       TCGA-DW-7834       TCGA-DW-7837       TCGA-DW-7838 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-DW-7839       TCGA-DW-7840       TCGA-DW-7842       TCGA-DZ-6131 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-DZ-6132       TCGA-DZ-6133       TCGA-DZ-6134       TCGA-DZ-6135 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-EU-5904       TCGA-EV-5901       TCGA-EV-5903       TCGA-F9-A4JJ 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-G7-6789       TCGA-G7-6790       TCGA-G7-6792       TCGA-G7-6793 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-G7-6795       TCGA-G7-6796       TCGA-G7-7501       TCGA-G7-7502 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-G7-A4TM       TCGA-GL-6846       TCGA-GL-7773       TCGA-GL-7966 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-GL-8500       TCGA-GL-A4EM       TCGA-GL-A59T       TCGA-HE-7128 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-HE-7130       TCGA-HE-A5NJ       TCGA-IA-A40U       TCGA-IA-A40X 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-IA-A40Y       TCGA-IZ-8195       TCGA-IZ-8196       TCGA-IZ-A6M9 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-J7-6720       TCGA-J7-8537       TCGA-KL-8323       TCGA-KL-8324 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-KL-8327       TCGA-KL-8328       TCGA-KL-8331       TCGA-KL-8332 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-KL-8333       TCGA-KL-8334       TCGA-KL-8335       TCGA-KL-8336 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-KL-8338       TCGA-KL-8339       TCGA-KL-8340       TCGA-KL-8341 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-KL-8342       TCGA-KL-8343       TCGA-KL-8344       TCGA-KL-8345 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-KM-8438       TCGA-KM-8439       TCGA-KM-8441       TCGA-KM-8442 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-KM-8639       TCGA-KN-8418       TCGA-KN-8419       TCGA-KN-8422 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-KN-8423       TCGA-KN-8424       TCGA-KN-8426       TCGA-KN-8427 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-KN-8428       TCGA-KN-8429       TCGA-KN-8430       TCGA-KN-8431 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-KN-8432       TCGA-KN-8433       TCGA-KN-8434       TCGA-KN-8436 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-KN-8437       TCGA-KO-8404       TCGA-KO-8405       TCGA-KO-8408 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-KO-8409       TCGA-KO-8410       TCGA-KO-8413       TCGA-KO-8415 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-KO-8416       TCGA-KO-8417       TCGA-KV-A6GD       TCGA-KV-A6GE 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-P4-A5E6       TCGA-P4-A5E7       TCGA-P4-A5E8       TCGA-P4-A5EA 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-PJ-A5Z8       TCGA-PJ-A5Z9       TCGA-Q2-A5QZ 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPR137 MUTATED        0      1      0      1      0
  GPR137 WILD-TYPE     26     42     62     99     46
D70V10, multiclass
[1] "Remove cluster labels:" "GPR137 MUTATED"        
clus
  GPR137 MUTATED GPR137 WILD-TYPE 
               2              275 
      TCGA-A3-3317       TCGA-A3-3358       TCGA-A3-3387       TCGA-A4-7286 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-A4-7287       TCGA-A4-7288       TCGA-A4-7585       TCGA-A4-7734 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-A4-7828       TCGA-A4-7915       TCGA-A4-7996       TCGA-A4-7997 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-A4-8098       TCGA-A4-8310       TCGA-A4-8312       TCGA-A4-8515 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-A4-8517       TCGA-A4-8518       TCGA-A4-8630       TCGA-A4-A57E 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-A4-A5XZ       TCGA-A4-A5Y0       TCGA-A4-A5Y1       TCGA-AK-3440 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-AK-3458       TCGA-AK-3465       TCGA-AL-3466       TCGA-AL-3472 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-AL-3473       TCGA-AL-7173       TCGA-AT-A5NU       TCGA-B0-4700 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-B0-4706       TCGA-B0-4710       TCGA-B0-4712       TCGA-B0-4810 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-B0-4811       TCGA-B0-4836       TCGA-B0-4837       TCGA-B0-4852 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-B0-5080       TCGA-B0-5085       TCGA-B0-5088       TCGA-B0-5399 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-B0-5691       TCGA-B0-5692       TCGA-B0-5693       TCGA-B0-5694 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-B0-5695       TCGA-B0-5696       TCGA-B0-5699       TCGA-B0-5702 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-B0-5705       TCGA-B0-5709       TCGA-B1-5398       TCGA-B1-A47N 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-B1-A654       TCGA-B1-A656       TCGA-B1-A657       TCGA-B2-3923 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-B2-3924       TCGA-B2-5633       TCGA-B2-5635       TCGA-B3-3925 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-B3-4104       TCGA-B3-8121       TCGA-B4-5377       TCGA-B4-5836 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-B8-4621       TCGA-B8-5545       TCGA-B8-5550       TCGA-B8-5551 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-B8-5552       TCGA-B8-5553       TCGA-B9-4115       TCGA-B9-4117 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-B9-5156       TCGA-B9-A44B       TCGA-B9-A5W9       TCGA-B9-A69E 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-BP-4173       TCGA-BP-4340       TCGA-BP-4761       TCGA-BP-4770 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-BP-4787       TCGA-BP-4789       TCGA-BP-4790       TCGA-BP-4804 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-BP-4807       TCGA-BP-4961       TCGA-BP-4967       TCGA-BP-4968 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-BP-4970       TCGA-BP-4974       TCGA-BP-4976       TCGA-BP-4981 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-BP-4982       TCGA-BP-4985       TCGA-BP-4988       TCGA-BP-4989 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-BP-4992       TCGA-BP-4995       TCGA-BP-4998       TCGA-BP-5001 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-BP-5008       TCGA-BP-5009       TCGA-BQ-5876       TCGA-BQ-5877 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-BQ-5878       TCGA-BQ-5879       TCGA-BQ-5880       TCGA-BQ-5881 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-BQ-5882       TCGA-BQ-5883       TCGA-BQ-5884       TCGA-BQ-5886 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-BQ-5887       TCGA-BQ-5888       TCGA-BQ-5889       TCGA-BQ-5890 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-BQ-5891       TCGA-BQ-5892       TCGA-BQ-5893       TCGA-BQ-5894 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-BQ-7044       TCGA-BQ-7045       TCGA-BQ-7046       TCGA-BQ-7048 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-BQ-7050       TCGA-BQ-7051       TCGA-BQ-7053       TCGA-BQ-7055 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-BQ-7058       TCGA-BQ-7059       TCGA-BQ-7060       TCGA-BQ-7061 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-BQ-7062       TCGA-CJ-4870       TCGA-CJ-4875       TCGA-CJ-4876 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-CJ-4878       TCGA-CJ-4881       TCGA-CJ-4887       TCGA-CJ-4889 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-CJ-4890       TCGA-CJ-4895       TCGA-CJ-4900       TCGA-CJ-5671 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-CJ-5675       TCGA-CJ-5676       TCGA-CJ-5681       TCGA-CJ-5683 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-CJ-5686       TCGA-CJ-6031       TCGA-CJ-6032       TCGA-CW-5585 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-CW-5589       TCGA-CW-6087       TCGA-CZ-4854       TCGA-CZ-4858 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-CZ-5453       TCGA-CZ-5454       TCGA-CZ-5455       TCGA-CZ-5457 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-CZ-5459       TCGA-CZ-5462       TCGA-CZ-5463       TCGA-CZ-5466 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-CZ-5467       TCGA-CZ-5469       TCGA-CZ-5470       TCGA-CZ-5989 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-DV-5565       TCGA-DV-5566       TCGA-DV-5569       TCGA-DW-5560 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-DW-5561       TCGA-DW-7834       TCGA-DW-7837       TCGA-DW-7838 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-DW-7839       TCGA-DW-7840       TCGA-DW-7842       TCGA-DZ-6131 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-DZ-6132       TCGA-DZ-6133       TCGA-DZ-6134       TCGA-DZ-6135 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-EU-5904       TCGA-EV-5901       TCGA-EV-5903       TCGA-F9-A4JJ 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-G7-6789       TCGA-G7-6790       TCGA-G7-6792       TCGA-G7-6793 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-G7-6795       TCGA-G7-6796       TCGA-G7-7501       TCGA-G7-7502 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-G7-A4TM       TCGA-GL-6846       TCGA-GL-7773       TCGA-GL-7966 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-GL-8500       TCGA-GL-A4EM       TCGA-GL-A59T       TCGA-HE-7128 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-HE-7130       TCGA-HE-A5NJ       TCGA-IA-A40U       TCGA-IA-A40X 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-IA-A40Y       TCGA-IZ-8195       TCGA-IZ-8196       TCGA-IZ-A6M9 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-J7-6720       TCGA-J7-8537       TCGA-KL-8323       TCGA-KL-8324 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-KL-8327       TCGA-KL-8328       TCGA-KL-8331       TCGA-KL-8332 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-KL-8333       TCGA-KL-8334       TCGA-KL-8335       TCGA-KL-8336 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-KL-8338       TCGA-KL-8339       TCGA-KL-8340       TCGA-KL-8341 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-KL-8342       TCGA-KL-8343       TCGA-KL-8344       TCGA-KL-8345 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-KM-8438       TCGA-KM-8439       TCGA-KM-8441       TCGA-KM-8442 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-KM-8639       TCGA-KN-8418       TCGA-KN-8419       TCGA-KN-8422 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-KN-8423       TCGA-KN-8424       TCGA-KN-8426       TCGA-KN-8427 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-KN-8428       TCGA-KN-8429       TCGA-KN-8430       TCGA-KN-8431 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-KN-8432       TCGA-KN-8433       TCGA-KN-8434       TCGA-KN-8436 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-KN-8437       TCGA-KO-8404       TCGA-KO-8405       TCGA-KO-8408 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-KO-8409       TCGA-KO-8410       TCGA-KO-8413       TCGA-KO-8415 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-KO-8416       TCGA-KO-8417       TCGA-KV-A6GD       TCGA-KV-A6GE 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-P4-A5E6       TCGA-P4-A5E7       TCGA-P4-A5E8       TCGA-P4-A5EA 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 
      TCGA-PJ-A5Z8       TCGA-PJ-A5Z9       TCGA-Q2-A5QZ 
"GPR137 WILD-TYPE" "GPR137 WILD-TYPE" "GPR137 WILD-TYPE" 

Clustering(71) Variable = GFM1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GFM1 MUTATED        0      0      0      0
  GFM1 WILD-TYPE     21     17      9     14
D71V1, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GFM1 MUTATED        0      0      0      0      0
  GFM1 WILD-TYPE     11     17     14     10      9
D71V2, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GFM1 MUTATED        2      0      1
  GFM1 WILD-TYPE    178    242    242
D71V3, multiclass
        clus
vv       GFM1 MUTATED GFM1 WILD-TYPE
  CLUS_1            2            178
  CLUS_2            0            242
  CLUS_3            1            242
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GFM1 MUTATED        3      0      0
  GFM1 WILD-TYPE    100    255    119
D71V4, multiclass
        clus
vv       GFM1 MUTATED GFM1 WILD-TYPE
  CLUS_1            3            100
  CLUS_2            0            255
  CLUS_3            0            119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GFM1 MUTATED        3      0      0      0
  GFM1 WILD-TYPE     95    174    245    149
D71V5, multiclass
        clus
vv       GFM1 MUTATED GFM1 WILD-TYPE
  CLUS_1            3             95
  CLUS_2            0            174
  CLUS_3            0            245
  CLUS_4            0            149
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GFM1 MUTATED        3      0      0      0      0      0
  GFM1 WILD-TYPE     77     90    177    138     90     91
D71V6, multiclass
        clus
vv       GFM1 MUTATED GFM1 WILD-TYPE
  CLUS_1            3             77
  CLUS_2            0             90
  CLUS_3            0            177
  CLUS_4            0            138
  CLUS_5            0             90
  CLUS_6            0             91
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GFM1 MUTATED        3      0      0
  GFM1 WILD-TYPE    211    148    296
D71V7, multiclass
        clus
vv       GFM1 MUTATED GFM1 WILD-TYPE
  CLUS_1            3            211
  CLUS_2            0            148
  CLUS_3            0            296
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GFM1 MUTATED        3      0      0
  GFM1 WILD-TYPE     69    476    110
D71V8, multiclass
        clus
vv       GFM1 MUTATED GFM1 WILD-TYPE
  CLUS_1            3             69
  CLUS_2            0            476
  CLUS_3            0            110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GFM1 MUTATED        0      2      0      0
  GFM1 WILD-TYPE     76     58     42     99
D71V9, multiclass
[1] "Remove cluster labels:" "GFM1 MUTATED"          
clus
  GFM1 MUTATED GFM1 WILD-TYPE 
             2            275 
    TCGA-A3-3317     TCGA-A3-3358     TCGA-A3-3387     TCGA-A4-7286 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-A4-7287     TCGA-A4-7288     TCGA-A4-7585     TCGA-A4-7734 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-A4-7828     TCGA-A4-7915     TCGA-A4-7996     TCGA-A4-7997 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-A4-8098     TCGA-A4-8310     TCGA-A4-8312     TCGA-A4-8515 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-A4-8517     TCGA-A4-8518     TCGA-A4-8630     TCGA-A4-A57E 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-A4-A5XZ     TCGA-A4-A5Y0     TCGA-A4-A5Y1     TCGA-AK-3440 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-AK-3458     TCGA-AK-3465     TCGA-AL-3466     TCGA-AL-3472 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-AL-3473     TCGA-AL-7173     TCGA-AT-A5NU     TCGA-B0-4700 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-B0-4706     TCGA-B0-4710     TCGA-B0-4712     TCGA-B0-4810 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-B0-4811     TCGA-B0-4836     TCGA-B0-4837     TCGA-B0-4852 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-B0-5080     TCGA-B0-5085     TCGA-B0-5088     TCGA-B0-5399 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-B0-5691     TCGA-B0-5692     TCGA-B0-5693     TCGA-B0-5694 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-B0-5695     TCGA-B0-5696     TCGA-B0-5699     TCGA-B0-5702 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-B0-5705     TCGA-B0-5709     TCGA-B1-5398     TCGA-B1-A47N 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-B1-A654     TCGA-B1-A656     TCGA-B1-A657     TCGA-B2-3923 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-B2-3924     TCGA-B2-5633     TCGA-B2-5635     TCGA-B3-3925 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-B3-4104     TCGA-B3-8121     TCGA-B4-5377     TCGA-B4-5836 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-B8-4621     TCGA-B8-5545     TCGA-B8-5550     TCGA-B8-5551 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-B8-5552     TCGA-B8-5553     TCGA-B9-4115     TCGA-B9-4117 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-B9-5156     TCGA-B9-A44B     TCGA-B9-A5W9     TCGA-B9-A69E 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-BP-4173     TCGA-BP-4340     TCGA-BP-4761     TCGA-BP-4770 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-BP-4787     TCGA-BP-4789     TCGA-BP-4790     TCGA-BP-4804 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-BP-4807     TCGA-BP-4961     TCGA-BP-4967     TCGA-BP-4968 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-BP-4970     TCGA-BP-4974     TCGA-BP-4976     TCGA-BP-4981 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-BP-4982     TCGA-BP-4985     TCGA-BP-4988     TCGA-BP-4989 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-BP-4992     TCGA-BP-4995     TCGA-BP-4998     TCGA-BP-5001 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-BP-5008     TCGA-BP-5009     TCGA-BQ-5876     TCGA-BQ-5877 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-BQ-5878     TCGA-BQ-5879     TCGA-BQ-5880     TCGA-BQ-5881 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-BQ-5882     TCGA-BQ-5883     TCGA-BQ-5884     TCGA-BQ-5886 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-BQ-5887     TCGA-BQ-5888     TCGA-BQ-5889     TCGA-BQ-5890 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-BQ-5891     TCGA-BQ-5892     TCGA-BQ-5893     TCGA-BQ-5894 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-BQ-7044     TCGA-BQ-7045     TCGA-BQ-7046     TCGA-BQ-7048 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-BQ-7050     TCGA-BQ-7051     TCGA-BQ-7053     TCGA-BQ-7055 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-BQ-7058     TCGA-BQ-7059     TCGA-BQ-7060     TCGA-BQ-7061 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-BQ-7062     TCGA-CJ-4870     TCGA-CJ-4875     TCGA-CJ-4876 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-CJ-4878     TCGA-CJ-4881     TCGA-CJ-4887     TCGA-CJ-4889 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-CJ-4890     TCGA-CJ-4895     TCGA-CJ-4900     TCGA-CJ-5671 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-CJ-5675     TCGA-CJ-5676     TCGA-CJ-5681     TCGA-CJ-5683 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-CJ-5686     TCGA-CJ-6031     TCGA-CJ-6032     TCGA-CW-5585 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-CW-5589     TCGA-CW-6087     TCGA-CZ-4854     TCGA-CZ-4857 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-CZ-4858     TCGA-CZ-5453     TCGA-CZ-5454     TCGA-CZ-5455 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-CZ-5457     TCGA-CZ-5459     TCGA-CZ-5462     TCGA-CZ-5463 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-CZ-5466     TCGA-CZ-5467     TCGA-CZ-5469     TCGA-CZ-5470 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-CZ-5989     TCGA-DV-5565     TCGA-DV-5566     TCGA-DV-5569 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-DW-5560     TCGA-DW-5561     TCGA-DW-7834     TCGA-DW-7837 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-DW-7838     TCGA-DW-7839     TCGA-DW-7840     TCGA-DW-7842 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-DZ-6131     TCGA-DZ-6132     TCGA-DZ-6133     TCGA-DZ-6134 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-DZ-6135     TCGA-EU-5904     TCGA-EV-5901     TCGA-EV-5902 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-EV-5903     TCGA-F9-A4JJ     TCGA-G7-6789     TCGA-G7-6790 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-G7-6792     TCGA-G7-6793     TCGA-G7-6795     TCGA-G7-6796 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-G7-7501     TCGA-G7-7502     TCGA-G7-A4TM     TCGA-GL-6846 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-GL-7773     TCGA-GL-7966     TCGA-GL-8500     TCGA-GL-A4EM 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-GL-A59T     TCGA-HE-7128     TCGA-HE-7130     TCGA-HE-A5NJ 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-IA-A40U     TCGA-IA-A40X     TCGA-IA-A40Y     TCGA-IZ-8195 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-IZ-8196     TCGA-IZ-A6M9     TCGA-J7-6720     TCGA-J7-8537 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-KL-8323     TCGA-KL-8324     TCGA-KL-8327     TCGA-KL-8328 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-KL-8331     TCGA-KL-8332     TCGA-KL-8333     TCGA-KL-8334 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-KL-8335     TCGA-KL-8336     TCGA-KL-8338     TCGA-KL-8339 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-KL-8340     TCGA-KL-8341     TCGA-KL-8342     TCGA-KL-8343 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-KL-8344     TCGA-KL-8345     TCGA-KM-8438     TCGA-KM-8439 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-KM-8441     TCGA-KM-8442     TCGA-KM-8639     TCGA-KN-8418 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-KN-8419     TCGA-KN-8422     TCGA-KN-8423     TCGA-KN-8424 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-KN-8427     TCGA-KN-8428     TCGA-KN-8429     TCGA-KN-8430 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-KN-8431     TCGA-KN-8432     TCGA-KN-8433     TCGA-KN-8434 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-KN-8436     TCGA-KN-8437     TCGA-KO-8404     TCGA-KO-8405 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-KO-8409     TCGA-KO-8410     TCGA-KO-8413     TCGA-KO-8415 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-KO-8416     TCGA-KO-8417     TCGA-KV-A6GD     TCGA-KV-A6GE 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-P4-A5E6     TCGA-P4-A5E7     TCGA-P4-A5E8     TCGA-P4-A5EA 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-PJ-A5Z8     TCGA-PJ-A5Z9     TCGA-Q2-A5QZ 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GFM1 MUTATED        0      0      0      0      2
  GFM1 WILD-TYPE     26     43     62    100     44
D71V10, multiclass
[1] "Remove cluster labels:" "GFM1 MUTATED"          
clus
  GFM1 MUTATED GFM1 WILD-TYPE 
             2            275 
    TCGA-A3-3317     TCGA-A3-3358     TCGA-A3-3387     TCGA-A4-7286 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-A4-7287     TCGA-A4-7288     TCGA-A4-7585     TCGA-A4-7734 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-A4-7828     TCGA-A4-7915     TCGA-A4-7996     TCGA-A4-7997 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-A4-8098     TCGA-A4-8310     TCGA-A4-8312     TCGA-A4-8515 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-A4-8517     TCGA-A4-8518     TCGA-A4-8630     TCGA-A4-A57E 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-A4-A5XZ     TCGA-A4-A5Y0     TCGA-A4-A5Y1     TCGA-AK-3440 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-AK-3458     TCGA-AK-3465     TCGA-AL-3466     TCGA-AL-3472 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-AL-3473     TCGA-AL-7173     TCGA-AT-A5NU     TCGA-B0-4700 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-B0-4706     TCGA-B0-4710     TCGA-B0-4712     TCGA-B0-4810 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-B0-4811     TCGA-B0-4836     TCGA-B0-4837     TCGA-B0-4852 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-B0-5080     TCGA-B0-5085     TCGA-B0-5088     TCGA-B0-5399 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-B0-5691     TCGA-B0-5692     TCGA-B0-5693     TCGA-B0-5694 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-B0-5695     TCGA-B0-5696     TCGA-B0-5699     TCGA-B0-5702 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-B0-5705     TCGA-B0-5709     TCGA-B1-5398     TCGA-B1-A47N 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-B1-A654     TCGA-B1-A656     TCGA-B1-A657     TCGA-B2-3923 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-B2-3924     TCGA-B2-5633     TCGA-B2-5635     TCGA-B3-3925 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-B3-4104     TCGA-B3-8121     TCGA-B4-5377     TCGA-B4-5836 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-B8-4621     TCGA-B8-5545     TCGA-B8-5550     TCGA-B8-5551 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-B8-5552     TCGA-B8-5553     TCGA-B9-4115     TCGA-B9-4117 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-B9-5156     TCGA-B9-A44B     TCGA-B9-A5W9     TCGA-B9-A69E 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-BP-4173     TCGA-BP-4340     TCGA-BP-4761     TCGA-BP-4770 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-BP-4787     TCGA-BP-4789     TCGA-BP-4790     TCGA-BP-4804 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-BP-4807     TCGA-BP-4961     TCGA-BP-4967     TCGA-BP-4968 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-BP-4970     TCGA-BP-4974     TCGA-BP-4976     TCGA-BP-4981 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-BP-4982     TCGA-BP-4985     TCGA-BP-4988     TCGA-BP-4989 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-BP-4992     TCGA-BP-4995     TCGA-BP-4998     TCGA-BP-5001 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-BP-5008     TCGA-BP-5009     TCGA-BQ-5876     TCGA-BQ-5877 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-BQ-5878     TCGA-BQ-5879     TCGA-BQ-5880     TCGA-BQ-5881 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-BQ-5882     TCGA-BQ-5883     TCGA-BQ-5884     TCGA-BQ-5886 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-BQ-5887     TCGA-BQ-5888     TCGA-BQ-5889     TCGA-BQ-5890 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-BQ-5891     TCGA-BQ-5892     TCGA-BQ-5893     TCGA-BQ-5894 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-BQ-7044     TCGA-BQ-7045     TCGA-BQ-7046     TCGA-BQ-7048 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-BQ-7050     TCGA-BQ-7051     TCGA-BQ-7053     TCGA-BQ-7055 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-BQ-7058     TCGA-BQ-7059     TCGA-BQ-7060     TCGA-BQ-7061 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-BQ-7062     TCGA-CJ-4870     TCGA-CJ-4875     TCGA-CJ-4876 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-CJ-4878     TCGA-CJ-4881     TCGA-CJ-4887     TCGA-CJ-4889 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-CJ-4890     TCGA-CJ-4895     TCGA-CJ-4900     TCGA-CJ-5671 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-CJ-5675     TCGA-CJ-5676     TCGA-CJ-5681     TCGA-CJ-5683 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-CJ-5686     TCGA-CJ-6031     TCGA-CJ-6032     TCGA-CW-5585 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-CW-5589     TCGA-CW-6087     TCGA-CZ-4854     TCGA-CZ-4857 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-CZ-4858     TCGA-CZ-5453     TCGA-CZ-5454     TCGA-CZ-5455 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-CZ-5457     TCGA-CZ-5459     TCGA-CZ-5462     TCGA-CZ-5463 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-CZ-5466     TCGA-CZ-5467     TCGA-CZ-5469     TCGA-CZ-5470 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-CZ-5989     TCGA-DV-5565     TCGA-DV-5566     TCGA-DV-5569 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-DW-5560     TCGA-DW-5561     TCGA-DW-7834     TCGA-DW-7837 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-DW-7838     TCGA-DW-7839     TCGA-DW-7840     TCGA-DW-7842 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-DZ-6131     TCGA-DZ-6132     TCGA-DZ-6133     TCGA-DZ-6134 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-DZ-6135     TCGA-EU-5904     TCGA-EV-5901     TCGA-EV-5902 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-EV-5903     TCGA-F9-A4JJ     TCGA-G7-6789     TCGA-G7-6790 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-G7-6792     TCGA-G7-6793     TCGA-G7-6795     TCGA-G7-6796 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-G7-7501     TCGA-G7-7502     TCGA-G7-A4TM     TCGA-GL-6846 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-GL-7773     TCGA-GL-7966     TCGA-GL-8500     TCGA-GL-A4EM 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-GL-A59T     TCGA-HE-7128     TCGA-HE-7130     TCGA-HE-A5NJ 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-IA-A40U     TCGA-IA-A40X     TCGA-IA-A40Y     TCGA-IZ-8195 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-IZ-8196     TCGA-IZ-A6M9     TCGA-J7-6720     TCGA-J7-8537 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-KL-8323     TCGA-KL-8324     TCGA-KL-8327     TCGA-KL-8328 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-KL-8331     TCGA-KL-8332     TCGA-KL-8333     TCGA-KL-8334 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-KL-8335     TCGA-KL-8336     TCGA-KL-8338     TCGA-KL-8339 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-KL-8340     TCGA-KL-8341     TCGA-KL-8342     TCGA-KL-8343 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-KL-8344     TCGA-KL-8345     TCGA-KM-8438     TCGA-KM-8439 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-KM-8441     TCGA-KM-8442     TCGA-KM-8639     TCGA-KN-8418 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-KN-8419     TCGA-KN-8422     TCGA-KN-8423     TCGA-KN-8424 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-KN-8427     TCGA-KN-8428     TCGA-KN-8429     TCGA-KN-8430 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-KN-8431     TCGA-KN-8432     TCGA-KN-8433     TCGA-KN-8434 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-KN-8436     TCGA-KN-8437     TCGA-KO-8404     TCGA-KO-8405 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-KO-8409     TCGA-KO-8410     TCGA-KO-8413     TCGA-KO-8415 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-KO-8416     TCGA-KO-8417     TCGA-KV-A6GD     TCGA-KV-A6GE 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-P4-A5E6     TCGA-P4-A5E7     TCGA-P4-A5E8     TCGA-P4-A5EA 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 
    TCGA-PJ-A5Z8     TCGA-PJ-A5Z9     TCGA-Q2-A5QZ 
"GFM1 WILD-TYPE" "GFM1 WILD-TYPE" "GFM1 WILD-TYPE" 

Clustering(72) Variable = FAT1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAT1 MUTATED        0      1      0      1
  FAT1 WILD-TYPE     21     16      9     13
D72V1, multiclass
[1] "Remove cluster labels:" "FAT1 MUTATED"          
clus
  FAT1 MUTATED FAT1 WILD-TYPE 
             2             59 
    TCGA-A3-3311     TCGA-A3-3316     TCGA-A3-3317     TCGA-A3-3322 
"FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" 
    TCGA-A3-3323     TCGA-A3-3326     TCGA-A3-3331     TCGA-A3-3347 
"FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" 
    TCGA-A3-3349     TCGA-A3-3362     TCGA-A3-3363     TCGA-A3-3365 
"FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" 
    TCGA-A3-3374     TCGA-A3-3380     TCGA-A3-3383     TCGA-AK-3427 
"FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" 
    TCGA-AK-3440     TCGA-AK-3443     TCGA-AK-3453     TCGA-AK-3455 
"FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" 
    TCGA-AK-3456     TCGA-AK-3465     TCGA-AL-3466     TCGA-AL-3467 
"FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" 
    TCGA-AL-3472     TCGA-AL-3473     TCGA-AS-3777     TCGA-AS-3778 
"FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" 
    TCGA-B2-3923     TCGA-B2-3924     TCGA-B2-4098     TCGA-B2-4099 
"FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" 
    TCGA-B3-3925     TCGA-B3-3926     TCGA-B3-4103     TCGA-B3-4104 
"FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" 
    TCGA-B8-4143     TCGA-B8-4148     TCGA-B8-4151     TCGA-B8-4154 
"FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" 
    TCGA-B8-4619     TCGA-B8-4620     TCGA-B9-4113     TCGA-B9-4114 
"FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" 
    TCGA-B9-4115     TCGA-B9-4117     TCGA-BP-4161     TCGA-BP-4162 
"FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" 
    TCGA-BP-4163     TCGA-BP-4164     TCGA-BP-4167     TCGA-CJ-4634 
"FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" 
    TCGA-CJ-4636     TCGA-CJ-4637     TCGA-CJ-4638     TCGA-CJ-4639 
"FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" 
    TCGA-CJ-4640     TCGA-CJ-4643     TCGA-CJ-4644 
"FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAT1 MUTATED        0      1      1      0      0
  FAT1 WILD-TYPE     11     16     13     10      9
D72V2, multiclass
[1] "Remove cluster labels:" "FAT1 MUTATED"          
clus
  FAT1 MUTATED FAT1 WILD-TYPE 
             2             59 
    TCGA-A3-3311     TCGA-A3-3316     TCGA-A3-3317     TCGA-A3-3322 
"FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" 
    TCGA-A3-3323     TCGA-A3-3326     TCGA-A3-3331     TCGA-A3-3347 
"FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" 
    TCGA-A3-3349     TCGA-A3-3362     TCGA-A3-3363     TCGA-A3-3365 
"FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" 
    TCGA-A3-3374     TCGA-A3-3380     TCGA-A3-3383     TCGA-AK-3427 
"FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" 
    TCGA-AK-3440     TCGA-AK-3443     TCGA-AK-3453     TCGA-AK-3455 
"FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" 
    TCGA-AK-3456     TCGA-AK-3465     TCGA-AL-3466     TCGA-AL-3467 
"FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" 
    TCGA-AL-3472     TCGA-AL-3473     TCGA-AS-3777     TCGA-AS-3778 
"FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" 
    TCGA-B2-3923     TCGA-B2-3924     TCGA-B2-4098     TCGA-B2-4099 
"FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" 
    TCGA-B3-3925     TCGA-B3-3926     TCGA-B3-4103     TCGA-B3-4104 
"FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" 
    TCGA-B8-4143     TCGA-B8-4148     TCGA-B8-4151     TCGA-B8-4154 
"FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" 
    TCGA-B8-4619     TCGA-B8-4620     TCGA-B9-4113     TCGA-B9-4114 
"FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" 
    TCGA-B9-4115     TCGA-B9-4117     TCGA-BP-4161     TCGA-BP-4162 
"FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" 
    TCGA-BP-4163     TCGA-BP-4164     TCGA-BP-4167     TCGA-CJ-4634 
"FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" 
    TCGA-CJ-4636     TCGA-CJ-4637     TCGA-CJ-4638     TCGA-CJ-4639 
"FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" 
    TCGA-CJ-4640     TCGA-CJ-4643     TCGA-CJ-4644 
"FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FAT1 MUTATED       10      5      7
  FAT1 WILD-TYPE    170    237    236
D72V3, multiclass
        clus
vv       FAT1 MUTATED FAT1 WILD-TYPE
  CLUS_1           10            170
  CLUS_2            5            237
  CLUS_3            7            236
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FAT1 MUTATED        4      5      9
  FAT1 WILD-TYPE     99    250    110
D72V4, multiclass
        clus
vv       FAT1 MUTATED FAT1 WILD-TYPE
  CLUS_1            4             99
  CLUS_2            5            250
  CLUS_3            9            110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAT1 MUTATED        2      5      2     13
  FAT1 WILD-TYPE     96    169    243    136
D72V5, multiclass
        clus
vv       FAT1 MUTATED FAT1 WILD-TYPE
  CLUS_1            2             96
  CLUS_2            5            169
  CLUS_3            2            243
  CLUS_4           13            136
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FAT1 MUTATED        1      9      2      3      1      6
  FAT1 WILD-TYPE     79     81    175    135     89     85
D72V6, multiclass
        clus
vv       FAT1 MUTATED FAT1 WILD-TYPE
  CLUS_1            1             79
  CLUS_2            9             81
  CLUS_3            2            175
  CLUS_4            3            135
  CLUS_5            1             89
  CLUS_6            6             85
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FAT1 MUTATED       13      4      5
  FAT1 WILD-TYPE    201    144    291
D72V7, multiclass
        clus
vv       FAT1 MUTATED FAT1 WILD-TYPE
  CLUS_1           13            201
  CLUS_2            4            144
  CLUS_3            5            291
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FAT1 MUTATED        1     14      7
  FAT1 WILD-TYPE     71    462    103
D72V8, multiclass
        clus
vv       FAT1 MUTATED FAT1 WILD-TYPE
  CLUS_1            1             71
  CLUS_2           14            462
  CLUS_3            7            103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAT1 MUTATED        5      1      3      2
  FAT1 WILD-TYPE     71     59     39     97
D72V9, multiclass
        clus
vv       FAT1 MUTATED FAT1 WILD-TYPE
  CLUS_1            5             71
  CLUS_2            1             59
  CLUS_3            3             39
  CLUS_4            2             97
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAT1 MUTATED        1      2      6      1      1
  FAT1 WILD-TYPE     25     41     56     99     45
D72V10, multiclass
        clus
vv       FAT1 MUTATED FAT1 WILD-TYPE
  CLUS_1            1             25
  CLUS_2            2             41
  CLUS_3            6             56
  CLUS_4            1             99
  CLUS_5            1             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(73) Variable = RRP12 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RRP12 MUTATED        0      0      0      0
  RRP12 WILD-TYPE     21     17      9     14
D73V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RRP12 MUTATED        0      0      0      0      0
  RRP12 WILD-TYPE     11     17     14     10      9
D73V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RRP12 MUTATED        3      3      3
  RRP12 WILD-TYPE    177    239    240
D73V3, multiclass
        clus
vv       RRP12 MUTATED RRP12 WILD-TYPE
  CLUS_1             3             177
  CLUS_2             3             239
  CLUS_3             3             240
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RRP12 MUTATED        1      2      3
  RRP12 WILD-TYPE    102    253    116
D73V4, multiclass
        clus
vv       RRP12 MUTATED RRP12 WILD-TYPE
  CLUS_1             1             102
  CLUS_2             2             253
  CLUS_3             3             116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RRP12 MUTATED        1      1      3      4
  RRP12 WILD-TYPE     97    173    242    145
D73V5, multiclass
        clus
vv       RRP12 MUTATED RRP12 WILD-TYPE
  CLUS_1             1              97
  CLUS_2             1             173
  CLUS_3             3             242
  CLUS_4             4             145
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RRP12 MUTATED        1      1      1      1      2      3
  RRP12 WILD-TYPE     79     89    176    137     88     88
D73V6, multiclass
        clus
vv       RRP12 MUTATED RRP12 WILD-TYPE
  CLUS_1             1              79
  CLUS_2             1              89
  CLUS_3             1             176
  CLUS_4             1             137
  CLUS_5             2              88
  CLUS_6             3              88
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RRP12 MUTATED        5      2      2
  RRP12 WILD-TYPE    209    146    294
D73V7, multiclass
        clus
vv       RRP12 MUTATED RRP12 WILD-TYPE
  CLUS_1             5             209
  CLUS_2             2             146
  CLUS_3             2             294
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RRP12 MUTATED        1      5      3
  RRP12 WILD-TYPE     71    471    107
D73V8, multiclass
        clus
vv       RRP12 MUTATED RRP12 WILD-TYPE
  CLUS_1             1              71
  CLUS_2             5             471
  CLUS_3             3             107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RRP12 MUTATED        2      1      0      2
  RRP12 WILD-TYPE     74     59     42     97
D73V9, multiclass
        clus
vv       RRP12 MUTATED RRP12 WILD-TYPE
  CLUS_1             2              74
  CLUS_2             1              59
  CLUS_3             0              42
  CLUS_4             2              97
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RRP12 MUTATED        1      1      0      2      1
  RRP12 WILD-TYPE     25     42     62     98     45
D73V10, multiclass
        clus
vv       RRP12 MUTATED RRP12 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             1              42
  CLUS_3             0              62
  CLUS_4             2              98
  CLUS_5             1              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
