
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_mergedClustering/broadinstitute.org/cancer.genome.analysis/10572/2/merger_clustering.R")
> result <- main("-w/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CNMFClustering_FH/KIRC-TP/15081607/GDAC_CNMFselectcluster_15082673/KIRC-TP.bestclus.txt", "-y/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_pipelineConsensusClusteringPlus/KIRC-TP/15081602/GDAC_selectBestcluster_15084519/KIRC-TP.bestclus.txt", "-c/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CNMFClustering_FH/KIRC-TP/15081600/GDAC_CNMFselectcluster_15082674/KIRC-TP.bestclus.txt", "-d/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_pipelineConsensusClusteringPlus/KIRC-TP/15081609/GDAC_selectBestcluster_15084526/KIRC-TP.bestclus.txt", "-g/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CNMFClustering_FH/KIRC-TP/15087449/GDAC_CNMFselectcluster_15101691/KIRC-TP.bestclus.txt", "-a/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CNMFClustering_FH/KIRC-TP/15081608/GDAC_CNMFselectcluster_15087263/KIRC-TP.bestclus.txt", "-iKIRC-TP", "-b/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CNMFClustering_FH/KIRC-TP/15081597/GDAC_CNMFselectcluster_15087579/KIRC-TP.bestclus.txt", "-j/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_pipelineConsensusClusteringPlus/KIRC-TP/15081603/GDAC_selectBestcluster_15083862/KIRC-TP.bestclus.txt", "-l/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CNMFClustering_FH/KIRC-TP/15081601/GDAC_CNMFselectcluster_15096435/KIRC-TP.bestclus.txt", "-m/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_pipelineConsensusClusteringPlus/KIRC-TP/15081596/GDAC_selectBestcluster_15084749/KIRC-TP.bestclus.txt", "-n/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CNMFClustering_FH/KIRC-TP/15081599/GDAC_CNMFselectcluster_15089797/KIRC-TP.bestclus.txt", "-p/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_pipelineConsensusClusteringPlus/KIRC-TP/15081606/GDAC_selectBestcluster_15084522/KIRC-TP.bestclus.txt")
[1] "**** cluster demension ***"
[1] "dim(together):"
[1] 537  13
> q(save="no")
