[1] "ofn"        "-oTKIRC-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/KIRC-TP/15107132/KIRC-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/KIRC-TP/15087097/transformed.cor.cli.txt"

nPatients in clinical file=537, in cluster file=528, common to both=528
[1]  30 528
[1] "AMP PEAK  1(1Q24.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  1(1Q24.1) MUTATED AMP PEAK  1(1Q24.1) WILD-TYPE 
                           62                           466 
  AMP PEAK  1(1Q24.1) MUTATED AMP PEAK  1(1Q24.1) WILD-TYPE 
                           62                           466 
[1] "AMP PEAK  2(1Q32.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE 
                           62                           466 
  AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE 
                           62                           466 
[1] "AMP PEAK  3(3Q26.32) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  3(3Q26.32) MUTATED AMP PEAK  3(3Q26.32) WILD-TYPE 
                            87                            441 
  AMP PEAK  3(3Q26.32) MUTATED AMP PEAK  3(3Q26.32) WILD-TYPE 
                            87                            441 
[1] "AMP PEAK  4(4Q32.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  4(4Q32.1) MUTATED AMP PEAK  4(4Q32.1) WILD-TYPE 
                           16                           512 
  AMP PEAK  4(4Q32.1) MUTATED AMP PEAK  4(4Q32.1) WILD-TYPE 
                           16                           512 
[1] "AMP PEAK  5(5Q35.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  5(5Q35.1) MUTATED AMP PEAK  5(5Q35.1) WILD-TYPE 
                          332                           196 
  AMP PEAK  5(5Q35.1) MUTATED AMP PEAK  5(5Q35.1) WILD-TYPE 
                          332                           196 
[1] "AMP PEAK  6(7Q36.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  6(7Q36.3) MUTATED AMP PEAK  6(7Q36.3) WILD-TYPE 
                          176                           352 
  AMP PEAK  6(7Q36.3) MUTATED AMP PEAK  6(7Q36.3) WILD-TYPE 
                          176                           352 
[1] "AMP PEAK  7(8Q24.22) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  7(8Q24.22) MUTATED AMP PEAK  7(8Q24.22) WILD-TYPE 
                            79                            449 
  AMP PEAK  7(8Q24.22) MUTATED AMP PEAK  7(8Q24.22) WILD-TYPE 
                            79                            449 
[1] "AMP PEAK  8(10P14) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  8(10P14) MUTATED AMP PEAK  8(10P14) WILD-TYPE 
                          20                          508 
  AMP PEAK  8(10P14) MUTATED AMP PEAK  8(10P14) WILD-TYPE 
                          20                          508 
[1] "AMP PEAK  9(XP22.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  9(XP22.2) MUTATED AMP PEAK  9(XP22.2) WILD-TYPE 
                           31                           497 
  AMP PEAK  9(XP22.2) MUTATED AMP PEAK  9(XP22.2) WILD-TYPE 
                           31                           497 
[1] "AMP PEAK 10(XP11.4) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 10(XP11.4) MUTATED AMP PEAK 10(XP11.4) WILD-TYPE 
                           33                           495 
  AMP PEAK 10(XP11.4) MUTATED AMP PEAK 10(XP11.4) WILD-TYPE 
                           33                           495 
[1] "AMP PEAK 11(XQ11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 11(XQ11.2) MUTATED AMP PEAK 11(XQ11.2) WILD-TYPE 
                           29                           499 
  AMP PEAK 11(XQ11.2) MUTATED AMP PEAK 11(XQ11.2) WILD-TYPE 
                           29                           499 
[1] "AMP PEAK 12(XQ28) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 12(XQ28) MUTATED AMP PEAK 12(XQ28) WILD-TYPE 
                         37                         491 
  AMP PEAK 12(XQ28) MUTATED AMP PEAK 12(XQ28) WILD-TYPE 
                         37                         491 
[1] "DEL PEAK  1(1P36.23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE 
                           103                            425 
  DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE 
                           103                            425 
[1] "DEL PEAK  2(1P31.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE 
                           77                           451 
  DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE 
                           77                           451 
[1] "DEL PEAK  3(1Q43) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE 
                         42                         486 
  DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE 
                         42                         486 
[1] "DEL PEAK  4(2Q37.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE 
                           50                           478 
  DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE 
                           50                           478 
[1] "DEL PEAK  5(3P26.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(3P26.3) MUTATED DEL PEAK  5(3P26.3) WILD-TYPE 
                          455                            73 
  DEL PEAK  5(3P26.3) MUTATED DEL PEAK  5(3P26.3) WILD-TYPE 
                          455                            73 
[1] "DEL PEAK  6(3P22.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(3P22.2) MUTATED DEL PEAK  6(3P22.2) WILD-TYPE 
                          465                            63 
  DEL PEAK  6(3P22.2) MUTATED DEL PEAK  6(3P22.2) WILD-TYPE 
                          465                            63 
[1] "DEL PEAK  7(3P14.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(3P14.1) MUTATED DEL PEAK  7(3P14.1) WILD-TYPE 
                          373                           155 
  DEL PEAK  7(3P14.1) MUTATED DEL PEAK  7(3P14.1) WILD-TYPE 
                          373                           155 
[1] "DEL PEAK  8(3P12.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(3P12.2) MUTATED DEL PEAK  8(3P12.2) WILD-TYPE 
                          305                           223 
  DEL PEAK  8(3P12.2) MUTATED DEL PEAK  8(3P12.2) WILD-TYPE 
                          305                           223 
[1] "DEL PEAK  9(3Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(3Q11.2) MUTATED DEL PEAK  9(3Q11.2) WILD-TYPE 
                          161                           367 
  DEL PEAK  9(3Q11.2) MUTATED DEL PEAK  9(3Q11.2) WILD-TYPE 
                          161                           367 
[1] "DEL PEAK 10(4Q34.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(4Q34.3) MUTATED DEL PEAK 10(4Q34.3) WILD-TYPE 
                           78                           450 
  DEL PEAK 10(4Q34.3) MUTATED DEL PEAK 10(4Q34.3) WILD-TYPE 
                           78                           450 
[1] "DEL PEAK 11(6Q26) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE 
                        151                         377 
  DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE 
                        151                         377 
[1] "DEL PEAK 12(6Q26) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(6Q26) MUTATED DEL PEAK 12(6Q26) WILD-TYPE 
                        151                         377 
  DEL PEAK 12(6Q26) MUTATED DEL PEAK 12(6Q26) WILD-TYPE 
                        151                         377 
[1] "DEL PEAK 13(8P23.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(8P23.2) MUTATED DEL PEAK 13(8P23.2) WILD-TYPE 
                          154                           374 
  DEL PEAK 13(8P23.2) MUTATED DEL PEAK 13(8P23.2) WILD-TYPE 
                          154                           374 
[1] "DEL PEAK 14(9P23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(9P23) MUTATED DEL PEAK 14(9P23) WILD-TYPE 
                        152                         376 
  DEL PEAK 14(9P23) MUTATED DEL PEAK 14(9P23) WILD-TYPE 
                        152                         376 
[1] "DEL PEAK 15(9P21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(9P21.3) MUTATED DEL PEAK 15(9P21.3) WILD-TYPE 
                          159                           369 
  DEL PEAK 15(9P21.3) MUTATED DEL PEAK 15(9P21.3) WILD-TYPE 
                          159                           369 
[1] "DEL PEAK 16(10Q23.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(10Q23.31) MUTATED DEL PEAK 16(10Q23.31) WILD-TYPE 
                             96                             432 
  DEL PEAK 16(10Q23.31) MUTATED DEL PEAK 16(10Q23.31) WILD-TYPE 
                             96                             432 
[1] "DEL PEAK 17(13Q14.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(13Q14.2) MUTATED DEL PEAK 17(13Q14.2) WILD-TYPE 
                            82                            446 
  DEL PEAK 17(13Q14.2) MUTATED DEL PEAK 17(13Q14.2) WILD-TYPE 
                            82                            446 
[1] "DEL PEAK 18(14Q31.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(14Q31.1) MUTATED DEL PEAK 18(14Q31.1) WILD-TYPE 
                           228                            300 
  DEL PEAK 18(14Q31.1) MUTATED DEL PEAK 18(14Q31.1) WILD-TYPE 
                           228                            300 
[1] "data2feature, selection=ALL"
 [1] "MRNA_CNMF"                   "MRNA_CHIERARCHICAL"         
 [3] "CN_CNMF"                     "METHLYATION_CNMF"           
 [5] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [7] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [9] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[11] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 12 rows and 528 columns.

Variable 1:'MRNA_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'MRNA_CHIERARCHICAL':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'CN_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'METHLYATION_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'RPPA_CNMF':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'RPPA_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MRNASEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 11:'MIRSEQ_MATURE_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "## **** detect survival parameters (defined in index such as ind_OS, ind_MFS, ind_RFS, ind_RFS, ind_BCR and ind_d2ssd) *** ##"
[1] "detected survival parameters using [ind_OS, overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_OS, curated_overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_TCGAOS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survivial parameters using [ind_MFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_RFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_BCR]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_Progression]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [index_additional_survival_time]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using condition: [is.null(surv.mat)&&(selection=='SURV')]"
[1] "survival parameters accumulated so far"
NULL
[1] "************ conversion from categorical data to rank data ********** "
[1] "****** SUMMARY ***** "
Output Data has 528 columns, 0 survival variables, and 12 non-survival variables.
[1] "* survival variables: "
NULL
[1] "* non-survival variables: "
 [1] "MRNA_CNMF"                   "MRNA_CHIERARCHICAL"         
 [3] "CN_CNMF"                     "METHLYATION_CNMF"           
 [5] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [7] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [9] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[11] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
MRNA_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNA_CHIERARCHICAL, nv=7, binary=FALSE, numeric=FALSE
CN_CNMF, nv=3, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=6, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=6, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE

Clustering(1) Variable = AMP PEAK  1(1Q24.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q24.1) MUTATED        3      6      1
  AMP PEAK  1(1Q24.1) WILD-TYPE     30     18     12
D1V1, multiclass
        clus
vv       AMP PEAK  1(1Q24.1) MUTATED AMP PEAK  1(1Q24.1) WILD-TYPE
  CLUS_1                           3                            30
  CLUS_2                           6                            18
  CLUS_3                           1                            12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1Q24.1) MUTATED        1      3      0      3      1      1
  AMP PEAK  1(1Q24.1) WILD-TYPE     10      9      4      8     12      8
                               vv
clus                            CLUS_7
  AMP PEAK  1(1Q24.1) MUTATED        1
  AMP PEAK  1(1Q24.1) WILD-TYPE      9
D1V2, multiclass
        clus
vv       AMP PEAK  1(1Q24.1) MUTATED AMP PEAK  1(1Q24.1) WILD-TYPE
  CLUS_1                           1                            10
  CLUS_2                           3                             9
  CLUS_3                           0                             4
  CLUS_4                           3                             8
  CLUS_5                           1                            12
  CLUS_6                           1                             8
  CLUS_7                           1                             9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q24.1) MUTATED       12      3     47
  AMP PEAK  1(1Q24.1) WILD-TYPE    226    132    108
D1V3, multiclass
        clus
vv       AMP PEAK  1(1Q24.1) MUTATED AMP PEAK  1(1Q24.1) WILD-TYPE
  CLUS_1                          12                           226
  CLUS_2                           3                           132
  CLUS_3                          47                           108
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q24.1) MUTATED        8     11     11
  AMP PEAK  1(1Q24.1) WILD-TYPE    120     65     99
D1V4, multiclass
        clus
vv       AMP PEAK  1(1Q24.1) MUTATED AMP PEAK  1(1Q24.1) WILD-TYPE
  CLUS_1                           8                           120
  CLUS_2                          11                            65
  CLUS_3                          11                            99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1Q24.1) MUTATED       10     13     12      7      9      3
  AMP PEAK  1(1Q24.1) WILD-TYPE     98     49     63     73     70     40
D1V5, multiclass
        clus
vv       AMP PEAK  1(1Q24.1) MUTATED AMP PEAK  1(1Q24.1) WILD-TYPE
  CLUS_1                          10                            98
  CLUS_2                          13                            49
  CLUS_3                          12                            63
  CLUS_4                           7                            73
  CLUS_5                           9                            70
  CLUS_6                           3                            40
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q24.1) MUTATED       18     17     19
  AMP PEAK  1(1Q24.1) WILD-TYPE    103    179    111
D1V6, multiclass
        clus
vv       AMP PEAK  1(1Q24.1) MUTATED AMP PEAK  1(1Q24.1) WILD-TYPE
  CLUS_1                          18                           103
  CLUS_2                          17                           179
  CLUS_3                          19                           111
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q24.1) MUTATED        3     19     38
  AMP PEAK  1(1Q24.1) WILD-TYPE    108    202    155
D1V7, multiclass
        clus
vv       AMP PEAK  1(1Q24.1) MUTATED AMP PEAK  1(1Q24.1) WILD-TYPE
  CLUS_1                           3                           108
  CLUS_2                          19                           202
  CLUS_3                          38                           155
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1Q24.1) MUTATED        7      3     18     25      7      0
  AMP PEAK  1(1Q24.1) WILD-TYPE    110     30    165    107     28     25
D1V8, multiclass
        clus
vv       AMP PEAK  1(1Q24.1) MUTATED AMP PEAK  1(1Q24.1) WILD-TYPE
  CLUS_1                           7                           110
  CLUS_2                           3                            30
  CLUS_3                          18                           165
  CLUS_4                          25                           107
  CLUS_5                           7                            28
  CLUS_6                           0                            25
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q24.1) MUTATED        4     19     37
  AMP PEAK  1(1Q24.1) WILD-TYPE    120    185    145
D1V9, multiclass
        clus
vv       AMP PEAK  1(1Q24.1) MUTATED AMP PEAK  1(1Q24.1) WILD-TYPE
  CLUS_1                           4                           120
  CLUS_2                          19                           185
  CLUS_3                          37                           145
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1Q24.1) MUTATED       15     20     15     10
  AMP PEAK  1(1Q24.1) WILD-TYPE    129    114    180     27
D1V10, multiclass
        clus
vv       AMP PEAK  1(1Q24.1) MUTATED AMP PEAK  1(1Q24.1) WILD-TYPE
  CLUS_1                          15                           129
  CLUS_2                          20                           114
  CLUS_3                          15                           180
  CLUS_4                          10                            27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1Q24.1) MUTATED        4      0      4      3
  AMP PEAK  1(1Q24.1) WILD-TYPE     34     21     44     32
D1V11, multiclass
        clus
vv       AMP PEAK  1(1Q24.1) MUTATED AMP PEAK  1(1Q24.1) WILD-TYPE
  CLUS_1                           4                            34
  CLUS_2                           0                            21
  CLUS_3                           4                            44
  CLUS_4                           3                            32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q24.1) MUTATED        3      5      3
  AMP PEAK  1(1Q24.1) WILD-TYPE     36     51     44
D1V12, multiclass
        clus
vv       AMP PEAK  1(1Q24.1) MUTATED AMP PEAK  1(1Q24.1) WILD-TYPE
  CLUS_1                           3                            36
  CLUS_2                           5                            51
  CLUS_3                           3                            44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = AMP PEAK  2(1Q32.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q32.1) MUTATED        3      5      1
  AMP PEAK  2(1Q32.1) WILD-TYPE     30     19     12
D2V1, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                           3                            30
  CLUS_2                           5                            19
  CLUS_3                           1                            12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(1Q32.1) MUTATED        1      3      0      2      1      1
  AMP PEAK  2(1Q32.1) WILD-TYPE     10      9      4      9     12      8
                               vv
clus                            CLUS_7
  AMP PEAK  2(1Q32.1) MUTATED        1
  AMP PEAK  2(1Q32.1) WILD-TYPE      9
D2V2, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                           1                            10
  CLUS_2                           3                             9
  CLUS_3                           0                             4
  CLUS_4                           2                             9
  CLUS_5                           1                            12
  CLUS_6                           1                             8
  CLUS_7                           1                             9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q32.1) MUTATED        9      3     50
  AMP PEAK  2(1Q32.1) WILD-TYPE    229    132    105
D2V3, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                           9                           229
  CLUS_2                           3                           132
  CLUS_3                          50                           105
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q32.1) MUTATED        6     11     12
  AMP PEAK  2(1Q32.1) WILD-TYPE    122     65     98
D2V4, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                           6                           122
  CLUS_2                          11                            65
  CLUS_3                          12                            98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(1Q32.1) MUTATED       11     14     13      6      7      4
  AMP PEAK  2(1Q32.1) WILD-TYPE     97     48     62     74     72     39
D2V5, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                          11                            97
  CLUS_2                          14                            48
  CLUS_3                          13                            62
  CLUS_4                           6                            74
  CLUS_5                           7                            72
  CLUS_6                           4                            39
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q32.1) MUTATED       20     16     19
  AMP PEAK  2(1Q32.1) WILD-TYPE    101    180    111
D2V6, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                          20                           101
  CLUS_2                          16                           180
  CLUS_3                          19                           111
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q32.1) MUTATED        2     19     39
  AMP PEAK  2(1Q32.1) WILD-TYPE    109    202    154
D2V7, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                           2                           109
  CLUS_2                          19                           202
  CLUS_3                          39                           154
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(1Q32.1) MUTATED        7      2     18     26      7      0
  AMP PEAK  2(1Q32.1) WILD-TYPE    110     31    165    106     28     25
D2V8, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                           7                           110
  CLUS_2                           2                            31
  CLUS_3                          18                           165
  CLUS_4                          26                           106
  CLUS_5                           7                            28
  CLUS_6                           0                            25
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q32.1) MUTATED        4     18     38
  AMP PEAK  2(1Q32.1) WILD-TYPE    120    186    144
D2V9, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                           4                           120
  CLUS_2                          18                           186
  CLUS_3                          38                           144
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q32.1) MUTATED       12     20     16     12
  AMP PEAK  2(1Q32.1) WILD-TYPE    132    114    179     25
D2V10, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                          12                           132
  CLUS_2                          20                           114
  CLUS_3                          16                           179
  CLUS_4                          12                            25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q32.1) MUTATED        4      0      3      5
  AMP PEAK  2(1Q32.1) WILD-TYPE     34     21     45     30
D2V11, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                           4                            34
  CLUS_2                           0                            21
  CLUS_3                           3                            45
  CLUS_4                           5                            30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q32.1) MUTATED        3      6      3
  AMP PEAK  2(1Q32.1) WILD-TYPE     36     50     44
D2V12, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                           3                            36
  CLUS_2                           6                            50
  CLUS_3                           3                            44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = AMP PEAK  3(3Q26.32) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(3Q26.32) MUTATED        2      7      2
  AMP PEAK  3(3Q26.32) WILD-TYPE     31     17     11
D3V1, multiclass
        clus
vv       AMP PEAK  3(3Q26.32) MUTATED AMP PEAK  3(3Q26.32) WILD-TYPE
  CLUS_1                            2                             31
  CLUS_2                            7                             17
  CLUS_3                            2                             11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(3Q26.32) MUTATED        0      2      0      5      1      1
  AMP PEAK  3(3Q26.32) WILD-TYPE     11     10      4      6     12      8
                                vv
clus                             CLUS_7
  AMP PEAK  3(3Q26.32) MUTATED        2
  AMP PEAK  3(3Q26.32) WILD-TYPE      8
D3V2, multiclass
        clus
vv       AMP PEAK  3(3Q26.32) MUTATED AMP PEAK  3(3Q26.32) WILD-TYPE
  CLUS_1                            0                             11
  CLUS_2                            2                             10
  CLUS_3                            0                              4
  CLUS_4                            5                              6
  CLUS_5                            1                             12
  CLUS_6                            1                              8
  CLUS_7                            2                              8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(3Q26.32) MUTATED       14     19     54
  AMP PEAK  3(3Q26.32) WILD-TYPE    224    116    101
D3V3, multiclass
        clus
vv       AMP PEAK  3(3Q26.32) MUTATED AMP PEAK  3(3Q26.32) WILD-TYPE
  CLUS_1                           14                            224
  CLUS_2                           19                            116
  CLUS_3                           54                            101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(3Q26.32) MUTATED        7     14     30
  AMP PEAK  3(3Q26.32) WILD-TYPE    121     62     80
D3V4, multiclass
        clus
vv       AMP PEAK  3(3Q26.32) MUTATED AMP PEAK  3(3Q26.32) WILD-TYPE
  CLUS_1                            7                            121
  CLUS_2                           14                             62
  CLUS_3                           30                             80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(3Q26.32) MUTATED       11     18     15     21      9      4
  AMP PEAK  3(3Q26.32) WILD-TYPE     97     44     60     59     70     39
D3V5, multiclass
        clus
vv       AMP PEAK  3(3Q26.32) MUTATED AMP PEAK  3(3Q26.32) WILD-TYPE
  CLUS_1                           11                             97
  CLUS_2                           18                             44
  CLUS_3                           15                             60
  CLUS_4                           21                             59
  CLUS_5                            9                             70
  CLUS_6                            4                             39
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(3Q26.32) MUTATED       14     22     42
  AMP PEAK  3(3Q26.32) WILD-TYPE    107    174     88
D3V6, multiclass
        clus
vv       AMP PEAK  3(3Q26.32) MUTATED AMP PEAK  3(3Q26.32) WILD-TYPE
  CLUS_1                           14                            107
  CLUS_2                           22                            174
  CLUS_3                           42                             88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(3Q26.32) MUTATED       14     18     55
  AMP PEAK  3(3Q26.32) WILD-TYPE     97    203    138
D3V7, multiclass
        clus
vv       AMP PEAK  3(3Q26.32) MUTATED AMP PEAK  3(3Q26.32) WILD-TYPE
  CLUS_1                           14                             97
  CLUS_2                           18                            203
  CLUS_3                           55                            138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(3Q26.32) MUTATED       14      4     14     43      8      4
  AMP PEAK  3(3Q26.32) WILD-TYPE    103     29    169     89     27     21
D3V8, multiclass
        clus
vv       AMP PEAK  3(3Q26.32) MUTATED AMP PEAK  3(3Q26.32) WILD-TYPE
  CLUS_1                           14                            103
  CLUS_2                            4                             29
  CLUS_3                           14                            169
  CLUS_4                           43                             89
  CLUS_5                            8                             27
  CLUS_6                            4                             21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(3Q26.32) MUTATED       13     16     55
  AMP PEAK  3(3Q26.32) WILD-TYPE    111    188    127
D3V9, multiclass
        clus
vv       AMP PEAK  3(3Q26.32) MUTATED AMP PEAK  3(3Q26.32) WILD-TYPE
  CLUS_1                           13                            111
  CLUS_2                           16                            188
  CLUS_3                           55                            127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(3Q26.32) MUTATED       29     32     17      6
  AMP PEAK  3(3Q26.32) WILD-TYPE    115    102    178     31
D3V10, multiclass
        clus
vv       AMP PEAK  3(3Q26.32) MUTATED AMP PEAK  3(3Q26.32) WILD-TYPE
  CLUS_1                           29                            115
  CLUS_2                           32                            102
  CLUS_3                           17                            178
  CLUS_4                            6                             31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(3Q26.32) MUTATED        3      1      3     11
  AMP PEAK  3(3Q26.32) WILD-TYPE     35     20     45     24
D3V11, multiclass
        clus
vv       AMP PEAK  3(3Q26.32) MUTATED AMP PEAK  3(3Q26.32) WILD-TYPE
  CLUS_1                            3                             35
  CLUS_2                            1                             20
  CLUS_3                            3                             45
  CLUS_4                           11                             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(3Q26.32) MUTATED        4     11      3
  AMP PEAK  3(3Q26.32) WILD-TYPE     35     45     44
D3V12, multiclass
        clus
vv       AMP PEAK  3(3Q26.32) MUTATED AMP PEAK  3(3Q26.32) WILD-TYPE
  CLUS_1                            4                             35
  CLUS_2                           11                             45
  CLUS_3                            3                             44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = AMP PEAK  4(4Q32.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(4Q32.1) MUTATED        0      2      1
  AMP PEAK  4(4Q32.1) WILD-TYPE     33     22     12
D4V1, multiclass
        clus
vv       AMP PEAK  4(4Q32.1) MUTATED AMP PEAK  4(4Q32.1) WILD-TYPE
  CLUS_1                           0                            33
  CLUS_2                           2                            22
  CLUS_3                           1                            12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(4Q32.1) MUTATED        0      1      0      1      0      0
  AMP PEAK  4(4Q32.1) WILD-TYPE     11     11      4     10     13      9
                               vv
clus                            CLUS_7
  AMP PEAK  4(4Q32.1) MUTATED        1
  AMP PEAK  4(4Q32.1) WILD-TYPE      9
D4V2, multiclass
        clus
vv       AMP PEAK  4(4Q32.1) MUTATED AMP PEAK  4(4Q32.1) WILD-TYPE
  CLUS_1                           0                            11
  CLUS_2                           1                            11
  CLUS_3                           0                             4
  CLUS_4                           1                            10
  CLUS_5                           0                            13
  CLUS_6                           0                             9
  CLUS_7                           1                             9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(4Q32.1) MUTATED        4      6      6
  AMP PEAK  4(4Q32.1) WILD-TYPE    234    129    149
D4V3, multiclass
        clus
vv       AMP PEAK  4(4Q32.1) MUTATED AMP PEAK  4(4Q32.1) WILD-TYPE
  CLUS_1                           4                           234
  CLUS_2                           6                           129
  CLUS_3                           6                           149
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(4Q32.1) MUTATED        4      1      2
  AMP PEAK  4(4Q32.1) WILD-TYPE    124     75    108
D4V4, multiclass
        clus
vv       AMP PEAK  4(4Q32.1) MUTATED AMP PEAK  4(4Q32.1) WILD-TYPE
  CLUS_1                           4                           124
  CLUS_2                           1                            75
  CLUS_3                           2                           108
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(4Q32.1) MUTATED        1      2      2      3      3      0
  AMP PEAK  4(4Q32.1) WILD-TYPE    107     60     73     77     76     43
D4V5, multiclass
        clus
vv       AMP PEAK  4(4Q32.1) MUTATED AMP PEAK  4(4Q32.1) WILD-TYPE
  CLUS_1                           1                           107
  CLUS_2                           2                            60
  CLUS_3                           2                            73
  CLUS_4                           3                            77
  CLUS_5                           3                            76
  CLUS_6                           0                            43
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(4Q32.1) MUTATED        2      3      6
  AMP PEAK  4(4Q32.1) WILD-TYPE    119    193    124
D4V6, multiclass
        clus
vv       AMP PEAK  4(4Q32.1) MUTATED AMP PEAK  4(4Q32.1) WILD-TYPE
  CLUS_1                           2                           119
  CLUS_2                           3                           193
  CLUS_3                           6                           124
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(4Q32.1) MUTATED        7      2      6
  AMP PEAK  4(4Q32.1) WILD-TYPE    104    219    187
D4V7, multiclass
        clus
vv       AMP PEAK  4(4Q32.1) MUTATED AMP PEAK  4(4Q32.1) WILD-TYPE
  CLUS_1                           7                           104
  CLUS_2                           2                           219
  CLUS_3                           6                           187
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(4Q32.1) MUTATED        4      0      2      5      0      4
  AMP PEAK  4(4Q32.1) WILD-TYPE    113     33    181    127     35     21
D4V8, multiclass
        clus
vv       AMP PEAK  4(4Q32.1) MUTATED AMP PEAK  4(4Q32.1) WILD-TYPE
  CLUS_1                           4                           113
  CLUS_2                           0                            33
  CLUS_3                           2                           181
  CLUS_4                           5                           127
  CLUS_5                           0                            35
  CLUS_6                           4                            21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(4Q32.1) MUTATED        3      1     12
  AMP PEAK  4(4Q32.1) WILD-TYPE    121    203    170
D4V9, multiclass
        clus
vv       AMP PEAK  4(4Q32.1) MUTATED AMP PEAK  4(4Q32.1) WILD-TYPE
  CLUS_1                           3                           121
  CLUS_2                           1                           203
  CLUS_3                          12                           170
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(4Q32.1) MUTATED        6      7      2      1
  AMP PEAK  4(4Q32.1) WILD-TYPE    138    127    193     36
D4V10, multiclass
        clus
vv       AMP PEAK  4(4Q32.1) MUTATED AMP PEAK  4(4Q32.1) WILD-TYPE
  CLUS_1                           6                           138
  CLUS_2                           7                           127
  CLUS_3                           2                           193
  CLUS_4                           1                            36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(4Q32.1) MUTATED        1      0      0      2
  AMP PEAK  4(4Q32.1) WILD-TYPE     37     21     48     33
D4V11, multiclass
        clus
vv       AMP PEAK  4(4Q32.1) MUTATED AMP PEAK  4(4Q32.1) WILD-TYPE
  CLUS_1                           1                            37
  CLUS_2                           0                            21
  CLUS_3                           0                            48
  CLUS_4                           2                            33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(4Q32.1) MUTATED        1      2      0
  AMP PEAK  4(4Q32.1) WILD-TYPE     38     54     47
D4V12, multiclass
        clus
vv       AMP PEAK  4(4Q32.1) MUTATED AMP PEAK  4(4Q32.1) WILD-TYPE
  CLUS_1                           1                            38
  CLUS_2                           2                            54
  CLUS_3                           0                            47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = AMP PEAK  5(5Q35.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(5Q35.1) MUTATED       20     14      3
  AMP PEAK  5(5Q35.1) WILD-TYPE     13     10     10
D5V1, multiclass
        clus
vv       AMP PEAK  5(5Q35.1) MUTATED AMP PEAK  5(5Q35.1) WILD-TYPE
  CLUS_1                          20                            13
  CLUS_2                          14                            10
  CLUS_3                           3                            10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(5Q35.1) MUTATED        8      5      0      9      7      5
  AMP PEAK  5(5Q35.1) WILD-TYPE      3      7      4      2      6      4
                               vv
clus                            CLUS_7
  AMP PEAK  5(5Q35.1) MUTATED        3
  AMP PEAK  5(5Q35.1) WILD-TYPE      7
D5V2, multiclass
        clus
vv       AMP PEAK  5(5Q35.1) MUTATED AMP PEAK  5(5Q35.1) WILD-TYPE
  CLUS_1                           8                             3
  CLUS_2                           5                             7
  CLUS_3                           0                             4
  CLUS_4                           9                             2
  CLUS_5                           7                             6
  CLUS_6                           5                             4
  CLUS_7                           3                             7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(5Q35.1) MUTATED      162     65    105
  AMP PEAK  5(5Q35.1) WILD-TYPE     76     70     50
D5V3, multiclass
        clus
vv       AMP PEAK  5(5Q35.1) MUTATED AMP PEAK  5(5Q35.1) WILD-TYPE
  CLUS_1                         162                            76
  CLUS_2                          65                            70
  CLUS_3                         105                            50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(5Q35.1) MUTATED       82     42     72
  AMP PEAK  5(5Q35.1) WILD-TYPE     46     34     38
D5V4, multiclass
        clus
vv       AMP PEAK  5(5Q35.1) MUTATED AMP PEAK  5(5Q35.1) WILD-TYPE
  CLUS_1                          82                            46
  CLUS_2                          42                            34
  CLUS_3                          72                            38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(5Q35.1) MUTATED       73     35     58     48     44     30
  AMP PEAK  5(5Q35.1) WILD-TYPE     35     27     17     32     35     13
D5V5, multiclass
        clus
vv       AMP PEAK  5(5Q35.1) MUTATED AMP PEAK  5(5Q35.1) WILD-TYPE
  CLUS_1                          73                            35
  CLUS_2                          35                            27
  CLUS_3                          58                            17
  CLUS_4                          48                            32
  CLUS_5                          44                            35
  CLUS_6                          30                            13
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(5Q35.1) MUTATED       88    129     71
  AMP PEAK  5(5Q35.1) WILD-TYPE     33     67     59
D5V6, multiclass
        clus
vv       AMP PEAK  5(5Q35.1) MUTATED AMP PEAK  5(5Q35.1) WILD-TYPE
  CLUS_1                          88                            33
  CLUS_2                         129                            67
  CLUS_3                          71                            59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(5Q35.1) MUTATED       53    149    128
  AMP PEAK  5(5Q35.1) WILD-TYPE     58     72     65
D5V7, multiclass
        clus
vv       AMP PEAK  5(5Q35.1) MUTATED AMP PEAK  5(5Q35.1) WILD-TYPE
  CLUS_1                          53                            58
  CLUS_2                         149                            72
  CLUS_3                         128                            65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(5Q35.1) MUTATED       79     15    121     84     26      5
  AMP PEAK  5(5Q35.1) WILD-TYPE     38     18     62     48      9     20
D5V8, multiclass
        clus
vv       AMP PEAK  5(5Q35.1) MUTATED AMP PEAK  5(5Q35.1) WILD-TYPE
  CLUS_1                          79                            38
  CLUS_2                          15                            18
  CLUS_3                         121                            62
  CLUS_4                          84                            48
  CLUS_5                          26                             9
  CLUS_6                           5                            20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(5Q35.1) MUTATED       71    139    113
  AMP PEAK  5(5Q35.1) WILD-TYPE     53     65     69
D5V9, multiclass
        clus
vv       AMP PEAK  5(5Q35.1) MUTATED AMP PEAK  5(5Q35.1) WILD-TYPE
  CLUS_1                          71                            53
  CLUS_2                         139                            65
  CLUS_3                         113                            69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(5Q35.1) MUTATED       89     79    132     23
  AMP PEAK  5(5Q35.1) WILD-TYPE     55     55     63     14
D5V10, multiclass
        clus
vv       AMP PEAK  5(5Q35.1) MUTATED AMP PEAK  5(5Q35.1) WILD-TYPE
  CLUS_1                          89                            55
  CLUS_2                          79                            55
  CLUS_3                         132                            63
  CLUS_4                          23                            14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(5Q35.1) MUTATED       23     14     34     26
  AMP PEAK  5(5Q35.1) WILD-TYPE     15      7     14      9
D5V11, multiclass
        clus
vv       AMP PEAK  5(5Q35.1) MUTATED AMP PEAK  5(5Q35.1) WILD-TYPE
  CLUS_1                          23                            15
  CLUS_2                          14                             7
  CLUS_3                          34                            14
  CLUS_4                          26                             9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(5Q35.1) MUTATED       25     38     34
  AMP PEAK  5(5Q35.1) WILD-TYPE     14     18     13
D5V12, multiclass
        clus
vv       AMP PEAK  5(5Q35.1) MUTATED AMP PEAK  5(5Q35.1) WILD-TYPE
  CLUS_1                          25                            14
  CLUS_2                          38                            18
  CLUS_3                          34                            13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = AMP PEAK  6(7Q36.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(7Q36.3) MUTATED        9      9      6
  AMP PEAK  6(7Q36.3) WILD-TYPE     24     15      7
D6V1, multiclass
        clus
vv       AMP PEAK  6(7Q36.3) MUTATED AMP PEAK  6(7Q36.3) WILD-TYPE
  CLUS_1                           9                            24
  CLUS_2                           9                            15
  CLUS_3                           6                             7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(7Q36.3) MUTATED        2      4      2      5      4      3
  AMP PEAK  6(7Q36.3) WILD-TYPE      9      8      2      6      9      6
                               vv
clus                            CLUS_7
  AMP PEAK  6(7Q36.3) MUTATED        4
  AMP PEAK  6(7Q36.3) WILD-TYPE      6
D6V2, multiclass
        clus
vv       AMP PEAK  6(7Q36.3) MUTATED AMP PEAK  6(7Q36.3) WILD-TYPE
  CLUS_1                           2                             9
  CLUS_2                           4                             8
  CLUS_3                           2                             2
  CLUS_4                           5                             6
  CLUS_5                           4                             9
  CLUS_6                           3                             6
  CLUS_7                           4                             6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(7Q36.3) MUTATED       39     48     89
  AMP PEAK  6(7Q36.3) WILD-TYPE    199     87     66
D6V3, multiclass
        clus
vv       AMP PEAK  6(7Q36.3) MUTATED AMP PEAK  6(7Q36.3) WILD-TYPE
  CLUS_1                          39                           199
  CLUS_2                          48                            87
  CLUS_3                          89                            66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(7Q36.3) MUTATED       32     16     45
  AMP PEAK  6(7Q36.3) WILD-TYPE     96     60     65
D6V4, multiclass
        clus
vv       AMP PEAK  6(7Q36.3) MUTATED AMP PEAK  6(7Q36.3) WILD-TYPE
  CLUS_1                          32                            96
  CLUS_2                          16                            60
  CLUS_3                          45                            65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(7Q36.3) MUTATED       23     30     31     35     23     10
  AMP PEAK  6(7Q36.3) WILD-TYPE     85     32     44     45     56     33
D6V5, multiclass
        clus
vv       AMP PEAK  6(7Q36.3) MUTATED AMP PEAK  6(7Q36.3) WILD-TYPE
  CLUS_1                          23                            85
  CLUS_2                          30                            32
  CLUS_3                          31                            44
  CLUS_4                          35                            45
  CLUS_5                          23                            56
  CLUS_6                          10                            33
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(7Q36.3) MUTATED       40     53     59
  AMP PEAK  6(7Q36.3) WILD-TYPE     81    143     71
D6V6, multiclass
        clus
vv       AMP PEAK  6(7Q36.3) MUTATED AMP PEAK  6(7Q36.3) WILD-TYPE
  CLUS_1                          40                            81
  CLUS_2                          53                           143
  CLUS_3                          59                            71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(7Q36.3) MUTATED       33     53     88
  AMP PEAK  6(7Q36.3) WILD-TYPE     78    168    105
D6V7, multiclass
        clus
vv       AMP PEAK  6(7Q36.3) MUTATED AMP PEAK  6(7Q36.3) WILD-TYPE
  CLUS_1                          33                            78
  CLUS_2                          53                           168
  CLUS_3                          88                           105
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(7Q36.3) MUTATED       39     11     45     60     13      6
  AMP PEAK  6(7Q36.3) WILD-TYPE     78     22    138     72     22     19
D6V8, multiclass
        clus
vv       AMP PEAK  6(7Q36.3) MUTATED AMP PEAK  6(7Q36.3) WILD-TYPE
  CLUS_1                          39                            78
  CLUS_2                          11                            22
  CLUS_3                          45                           138
  CLUS_4                          60                            72
  CLUS_5                          13                            22
  CLUS_6                           6                            19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(7Q36.3) MUTATED       37     58     78
  AMP PEAK  6(7Q36.3) WILD-TYPE     87    146    104
D6V9, multiclass
        clus
vv       AMP PEAK  6(7Q36.3) MUTATED AMP PEAK  6(7Q36.3) WILD-TYPE
  CLUS_1                          37                            87
  CLUS_2                          58                           146
  CLUS_3                          78                           104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(7Q36.3) MUTATED       48     57     52     16
  AMP PEAK  6(7Q36.3) WILD-TYPE     96     77    143     21
D6V10, multiclass
        clus
vv       AMP PEAK  6(7Q36.3) MUTATED AMP PEAK  6(7Q36.3) WILD-TYPE
  CLUS_1                          48                            96
  CLUS_2                          57                            77
  CLUS_3                          52                           143
  CLUS_4                          16                            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(7Q36.3) MUTATED       11      8     11     16
  AMP PEAK  6(7Q36.3) WILD-TYPE     27     13     37     19
D6V11, multiclass
        clus
vv       AMP PEAK  6(7Q36.3) MUTATED AMP PEAK  6(7Q36.3) WILD-TYPE
  CLUS_1                          11                            27
  CLUS_2                           8                            13
  CLUS_3                          11                            37
  CLUS_4                          16                            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(7Q36.3) MUTATED       12     20     14
  AMP PEAK  6(7Q36.3) WILD-TYPE     27     36     33
D6V12, multiclass
        clus
vv       AMP PEAK  6(7Q36.3) MUTATED AMP PEAK  6(7Q36.3) WILD-TYPE
  CLUS_1                          12                            27
  CLUS_2                          20                            36
  CLUS_3                          14                            33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = AMP PEAK  7(8Q24.22) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(8Q24.22) MUTATED        1      3      2
  AMP PEAK  7(8Q24.22) WILD-TYPE     32     21     11
D7V1, multiclass
        clus
vv       AMP PEAK  7(8Q24.22) MUTATED AMP PEAK  7(8Q24.22) WILD-TYPE
  CLUS_1                            1                             32
  CLUS_2                            3                             21
  CLUS_3                            2                             11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(8Q24.22) MUTATED        0      3      1      0      0      1
  AMP PEAK  7(8Q24.22) WILD-TYPE     11      9      3     11     13      8
                                vv
clus                             CLUS_7
  AMP PEAK  7(8Q24.22) MUTATED        1
  AMP PEAK  7(8Q24.22) WILD-TYPE      9
D7V2, multiclass
        clus
vv       AMP PEAK  7(8Q24.22) MUTATED AMP PEAK  7(8Q24.22) WILD-TYPE
  CLUS_1                            0                             11
  CLUS_2                            3                              9
  CLUS_3                            1                              3
  CLUS_4                            0                             11
  CLUS_5                            0                             13
  CLUS_6                            1                              8
  CLUS_7                            1                              9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(8Q24.22) MUTATED        6     17     56
  AMP PEAK  7(8Q24.22) WILD-TYPE    232    118     99
D7V3, multiclass
        clus
vv       AMP PEAK  7(8Q24.22) MUTATED AMP PEAK  7(8Q24.22) WILD-TYPE
  CLUS_1                            6                            232
  CLUS_2                           17                            118
  CLUS_3                           56                             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(8Q24.22) MUTATED        6     14     33
  AMP PEAK  7(8Q24.22) WILD-TYPE    122     62     77
D7V4, multiclass
        clus
vv       AMP PEAK  7(8Q24.22) MUTATED AMP PEAK  7(8Q24.22) WILD-TYPE
  CLUS_1                            6                            122
  CLUS_2                           14                             62
  CLUS_3                           33                             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(8Q24.22) MUTATED        5     24     15     15     10      2
  AMP PEAK  7(8Q24.22) WILD-TYPE    103     38     60     65     69     41
D7V5, multiclass
        clus
vv       AMP PEAK  7(8Q24.22) MUTATED AMP PEAK  7(8Q24.22) WILD-TYPE
  CLUS_1                            5                            103
  CLUS_2                           24                             38
  CLUS_3                           15                             60
  CLUS_4                           15                             65
  CLUS_5                           10                             69
  CLUS_6                            2                             41
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(8Q24.22) MUTATED       15     18     38
  AMP PEAK  7(8Q24.22) WILD-TYPE    106    178     92
D7V6, multiclass
        clus
vv       AMP PEAK  7(8Q24.22) MUTATED AMP PEAK  7(8Q24.22) WILD-TYPE
  CLUS_1                           15                            106
  CLUS_2                           18                            178
  CLUS_3                           38                             92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(8Q24.22) MUTATED        8      9     61
  AMP PEAK  7(8Q24.22) WILD-TYPE    103    212    132
D7V7, multiclass
        clus
vv       AMP PEAK  7(8Q24.22) MUTATED AMP PEAK  7(8Q24.22) WILD-TYPE
  CLUS_1                            8                            103
  CLUS_2                            9                            212
  CLUS_3                           61                            132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(8Q24.22) MUTATED        9      2      8     54      4      1
  AMP PEAK  7(8Q24.22) WILD-TYPE    108     31    175     78     31     24
D7V8, multiclass
        clus
vv       AMP PEAK  7(8Q24.22) MUTATED AMP PEAK  7(8Q24.22) WILD-TYPE
  CLUS_1                            9                            108
  CLUS_2                            2                             31
  CLUS_3                            8                            175
  CLUS_4                           54                             78
  CLUS_5                            4                             31
  CLUS_6                            1                             24
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(8Q24.22) MUTATED       13     11     53
  AMP PEAK  7(8Q24.22) WILD-TYPE    111    193    129
D7V9, multiclass
        clus
vv       AMP PEAK  7(8Q24.22) MUTATED AMP PEAK  7(8Q24.22) WILD-TYPE
  CLUS_1                           13                            111
  CLUS_2                           11                            193
  CLUS_3                           53                            129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(8Q24.22) MUTATED       29     24     11     13
  AMP PEAK  7(8Q24.22) WILD-TYPE    115    110    184     24
D7V10, multiclass
        clus
vv       AMP PEAK  7(8Q24.22) MUTATED AMP PEAK  7(8Q24.22) WILD-TYPE
  CLUS_1                           29                            115
  CLUS_2                           24                            110
  CLUS_3                           11                            184
  CLUS_4                           13                             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(8Q24.22) MUTATED        3      1      1     14
  AMP PEAK  7(8Q24.22) WILD-TYPE     35     20     47     21
D7V11, multiclass
        clus
vv       AMP PEAK  7(8Q24.22) MUTATED AMP PEAK  7(8Q24.22) WILD-TYPE
  CLUS_1                            3                             35
  CLUS_2                            1                             20
  CLUS_3                            1                             47
  CLUS_4                           14                             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(8Q24.22) MUTATED        3     13      3
  AMP PEAK  7(8Q24.22) WILD-TYPE     36     43     44
D7V12, multiclass
        clus
vv       AMP PEAK  7(8Q24.22) MUTATED AMP PEAK  7(8Q24.22) WILD-TYPE
  CLUS_1                            3                             36
  CLUS_2                           13                             43
  CLUS_3                            3                             44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = AMP PEAK  8(10P14) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(10P14) MUTATED        0      2      1
  AMP PEAK  8(10P14) WILD-TYPE     33     22     12
D8V1, multiclass
        clus
vv       AMP PEAK  8(10P14) MUTATED AMP PEAK  8(10P14) WILD-TYPE
  CLUS_1                          0                           33
  CLUS_2                          2                           22
  CLUS_3                          1                           12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK  8(10P14) MUTATED        0      1      0      1      0      0      1
  AMP PEAK  8(10P14) WILD-TYPE     11     11      4     10     13      9      9
D8V2, multiclass
        clus
vv       AMP PEAK  8(10P14) MUTATED AMP PEAK  8(10P14) WILD-TYPE
  CLUS_1                          0                           11
  CLUS_2                          1                           11
  CLUS_3                          0                            4
  CLUS_4                          1                           10
  CLUS_5                          0                           13
  CLUS_6                          0                            9
  CLUS_7                          1                            9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(10P14) MUTATED        1      5     14
  AMP PEAK  8(10P14) WILD-TYPE    237    130    141
D8V3, multiclass
        clus
vv       AMP PEAK  8(10P14) MUTATED AMP PEAK  8(10P14) WILD-TYPE
  CLUS_1                          1                          237
  CLUS_2                          5                          130
  CLUS_3                         14                          141
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(10P14) MUTATED        2      4      6
  AMP PEAK  8(10P14) WILD-TYPE    126     72    104
D8V4, multiclass
        clus
vv       AMP PEAK  8(10P14) MUTATED AMP PEAK  8(10P14) WILD-TYPE
  CLUS_1                          2                          126
  CLUS_2                          4                           72
  CLUS_3                          6                          104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(10P14) MUTATED        2      5      4      2      3      3
  AMP PEAK  8(10P14) WILD-TYPE    106     57     71     78     76     40
D8V5, multiclass
        clus
vv       AMP PEAK  8(10P14) MUTATED AMP PEAK  8(10P14) WILD-TYPE
  CLUS_1                          2                          106
  CLUS_2                          5                           57
  CLUS_3                          4                           71
  CLUS_4                          2                           78
  CLUS_5                          3                           76
  CLUS_6                          3                           40
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(10P14) MUTATED        3      7      9
  AMP PEAK  8(10P14) WILD-TYPE    118    189    121
D8V6, multiclass
        clus
vv       AMP PEAK  8(10P14) MUTATED AMP PEAK  8(10P14) WILD-TYPE
  CLUS_1                          3                          118
  CLUS_2                          7                          189
  CLUS_3                          9                          121
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(10P14) MUTATED        4      2     14
  AMP PEAK  8(10P14) WILD-TYPE    107    219    179
D8V7, multiclass
        clus
vv       AMP PEAK  8(10P14) MUTATED AMP PEAK  8(10P14) WILD-TYPE
  CLUS_1                          4                          107
  CLUS_2                          2                          219
  CLUS_3                         14                          179
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(10P14) MUTATED        2      2      0     14      2      0
  AMP PEAK  8(10P14) WILD-TYPE    115     31    183    118     33     25
D8V8, multiclass
        clus
vv       AMP PEAK  8(10P14) MUTATED AMP PEAK  8(10P14) WILD-TYPE
  CLUS_1                          2                          115
  CLUS_2                          2                           31
  CLUS_3                          0                          183
  CLUS_4                         14                          118
  CLUS_5                          2                           33
  CLUS_6                          0                           25
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(10P14) MUTATED        5      3     12
  AMP PEAK  8(10P14) WILD-TYPE    119    201    170
D8V9, multiclass
        clus
vv       AMP PEAK  8(10P14) MUTATED AMP PEAK  8(10P14) WILD-TYPE
  CLUS_1                          5                          119
  CLUS_2                          3                          201
  CLUS_3                         12                          170
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(10P14) MUTATED        7      6      3      4
  AMP PEAK  8(10P14) WILD-TYPE    137    128    192     33
D8V10, multiclass
        clus
vv       AMP PEAK  8(10P14) MUTATED AMP PEAK  8(10P14) WILD-TYPE
  CLUS_1                          7                          137
  CLUS_2                          6                          128
  CLUS_3                          3                          192
  CLUS_4                          4                           33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(10P14) MUTATED        1      0      2      0
  AMP PEAK  8(10P14) WILD-TYPE     37     21     46     35
D8V11, multiclass
        clus
vv       AMP PEAK  8(10P14) MUTATED AMP PEAK  8(10P14) WILD-TYPE
  CLUS_1                          1                           37
  CLUS_2                          0                           21
  CLUS_3                          2                           46
  CLUS_4                          0                           35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(10P14) MUTATED        1      0      2
  AMP PEAK  8(10P14) WILD-TYPE     38     56     45
D8V12, multiclass
        clus
vv       AMP PEAK  8(10P14) MUTATED AMP PEAK  8(10P14) WILD-TYPE
  CLUS_1                          1                           38
  CLUS_2                          0                           56
  CLUS_3                          2                           45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = AMP PEAK  9(XP22.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(XP22.2) MUTATED        2      2      1
  AMP PEAK  9(XP22.2) WILD-TYPE     31     22     12
D9V1, multiclass
        clus
vv       AMP PEAK  9(XP22.2) MUTATED AMP PEAK  9(XP22.2) WILD-TYPE
  CLUS_1                           2                            31
  CLUS_2                           2                            22
  CLUS_3                           1                            12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(XP22.2) MUTATED        0      2      0      0      2      0
  AMP PEAK  9(XP22.2) WILD-TYPE     11     10      4     11     11      9
                               vv
clus                            CLUS_7
  AMP PEAK  9(XP22.2) MUTATED        1
  AMP PEAK  9(XP22.2) WILD-TYPE      9
D9V2, multiclass
        clus
vv       AMP PEAK  9(XP22.2) MUTATED AMP PEAK  9(XP22.2) WILD-TYPE
  CLUS_1                           0                            11
  CLUS_2                           2                            10
  CLUS_3                           0                             4
  CLUS_4                           0                            11
  CLUS_5                           2                            11
  CLUS_6                           0                             9
  CLUS_7                           1                             9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(XP22.2) MUTATED        8      6     17
  AMP PEAK  9(XP22.2) WILD-TYPE    230    129    138
D9V3, multiclass
        clus
vv       AMP PEAK  9(XP22.2) MUTATED AMP PEAK  9(XP22.2) WILD-TYPE
  CLUS_1                           8                           230
  CLUS_2                           6                           129
  CLUS_3                          17                           138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(XP22.2) MUTATED        2      3      6
  AMP PEAK  9(XP22.2) WILD-TYPE    126     73    104
D9V4, multiclass
        clus
vv       AMP PEAK  9(XP22.2) MUTATED AMP PEAK  9(XP22.2) WILD-TYPE
  CLUS_1                           2                           126
  CLUS_2                           3                            73
  CLUS_3                           6                           104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(XP22.2) MUTATED        0      4      7     10      3      1
  AMP PEAK  9(XP22.2) WILD-TYPE    108     58     68     70     76     42
D9V5, multiclass
        clus
vv       AMP PEAK  9(XP22.2) MUTATED AMP PEAK  9(XP22.2) WILD-TYPE
  CLUS_1                           0                           108
  CLUS_2                           4                            58
  CLUS_3                           7                            68
  CLUS_4                          10                            70
  CLUS_5                           3                            76
  CLUS_6                           1                            42
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(XP22.2) MUTATED        4      7     14
  AMP PEAK  9(XP22.2) WILD-TYPE    117    189    116
D9V6, multiclass
        clus
vv       AMP PEAK  9(XP22.2) MUTATED AMP PEAK  9(XP22.2) WILD-TYPE
  CLUS_1                           4                           117
  CLUS_2                           7                           189
  CLUS_3                          14                           116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(XP22.2) MUTATED        8      7     16
  AMP PEAK  9(XP22.2) WILD-TYPE    103    214    177
D9V7, multiclass
        clus
vv       AMP PEAK  9(XP22.2) MUTATED AMP PEAK  9(XP22.2) WILD-TYPE
  CLUS_1                           8                           103
  CLUS_2                           7                           214
  CLUS_3                          16                           177
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(XP22.2) MUTATED        3      4      6     16      2      0
  AMP PEAK  9(XP22.2) WILD-TYPE    114     29    177    116     33     25
D9V8, multiclass
        clus
vv       AMP PEAK  9(XP22.2) MUTATED AMP PEAK  9(XP22.2) WILD-TYPE
  CLUS_1                           3                           114
  CLUS_2                           4                            29
  CLUS_3                           6                           177
  CLUS_4                          16                           116
  CLUS_5                           2                            33
  CLUS_6                           0                            25
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(XP22.2) MUTATED        5      8     18
  AMP PEAK  9(XP22.2) WILD-TYPE    119    196    164
D9V9, multiclass
        clus
vv       AMP PEAK  9(XP22.2) MUTATED AMP PEAK  9(XP22.2) WILD-TYPE
  CLUS_1                           5                           119
  CLUS_2                           8                           196
  CLUS_3                          18                           164
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(XP22.2) MUTATED       12      8      8      3
  AMP PEAK  9(XP22.2) WILD-TYPE    132    126    187     34
D9V10, multiclass
        clus
vv       AMP PEAK  9(XP22.2) MUTATED AMP PEAK  9(XP22.2) WILD-TYPE
  CLUS_1                          12                           132
  CLUS_2                           8                           126
  CLUS_3                           8                           187
  CLUS_4                           3                            34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(XP22.2) MUTATED        1      1      2      2
  AMP PEAK  9(XP22.2) WILD-TYPE     37     20     46     33
D9V11, multiclass
        clus
vv       AMP PEAK  9(XP22.2) MUTATED AMP PEAK  9(XP22.2) WILD-TYPE
  CLUS_1                           1                            37
  CLUS_2                           1                            20
  CLUS_3                           2                            46
  CLUS_4                           2                            33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(XP22.2) MUTATED        1      3      2
  AMP PEAK  9(XP22.2) WILD-TYPE     38     53     45
D9V12, multiclass
        clus
vv       AMP PEAK  9(XP22.2) MUTATED AMP PEAK  9(XP22.2) WILD-TYPE
  CLUS_1                           1                            38
  CLUS_2                           3                            53
  CLUS_3                           2                            45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = AMP PEAK 10(XP11.4) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(XP11.4) MUTATED        3      1      1
  AMP PEAK 10(XP11.4) WILD-TYPE     30     23     12
D10V1, multiclass
        clus
vv       AMP PEAK 10(XP11.4) MUTATED AMP PEAK 10(XP11.4) WILD-TYPE
  CLUS_1                           3                            30
  CLUS_2                           1                            23
  CLUS_3                           1                            12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(XP11.4) MUTATED        0      1      0      0      2      1
  AMP PEAK 10(XP11.4) WILD-TYPE     11     11      4     11     11      8
                               vv
clus                            CLUS_7
  AMP PEAK 10(XP11.4) MUTATED        1
  AMP PEAK 10(XP11.4) WILD-TYPE      9
D10V2, multiclass
        clus
vv       AMP PEAK 10(XP11.4) MUTATED AMP PEAK 10(XP11.4) WILD-TYPE
  CLUS_1                           0                            11
  CLUS_2                           1                            11
  CLUS_3                           0                             4
  CLUS_4                           0                            11
  CLUS_5                           2                            11
  CLUS_6                           1                             8
  CLUS_7                           1                             9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(XP11.4) MUTATED        8      6     19
  AMP PEAK 10(XP11.4) WILD-TYPE    230    129    136
D10V3, multiclass
        clus
vv       AMP PEAK 10(XP11.4) MUTATED AMP PEAK 10(XP11.4) WILD-TYPE
  CLUS_1                           8                           230
  CLUS_2                           6                           129
  CLUS_3                          19                           136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(XP11.4) MUTATED        3      4      9
  AMP PEAK 10(XP11.4) WILD-TYPE    125     72    101
D10V4, multiclass
        clus
vv       AMP PEAK 10(XP11.4) MUTATED AMP PEAK 10(XP11.4) WILD-TYPE
  CLUS_1                           3                           125
  CLUS_2                           4                            72
  CLUS_3                           9                           101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(XP11.4) MUTATED        0      5      5     10      5      0
  AMP PEAK 10(XP11.4) WILD-TYPE    108     57     70     70     74     43
D10V5, multiclass
        clus
vv       AMP PEAK 10(XP11.4) MUTATED AMP PEAK 10(XP11.4) WILD-TYPE
  CLUS_1                           0                           108
  CLUS_2                           5                            57
  CLUS_3                           5                            70
  CLUS_4                          10                            70
  CLUS_5                           5                            74
  CLUS_6                           0                            43
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(XP11.4) MUTATED        2      8     15
  AMP PEAK 10(XP11.4) WILD-TYPE    119    188    115
D10V6, multiclass
        clus
vv       AMP PEAK 10(XP11.4) MUTATED AMP PEAK 10(XP11.4) WILD-TYPE
  CLUS_1                           2                           119
  CLUS_2                           8                           188
  CLUS_3                          15                           115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(XP11.4) MUTATED        9      7     17
  AMP PEAK 10(XP11.4) WILD-TYPE    102    214    176
D10V7, multiclass
        clus
vv       AMP PEAK 10(XP11.4) MUTATED AMP PEAK 10(XP11.4) WILD-TYPE
  CLUS_1                           9                           102
  CLUS_2                           7                           214
  CLUS_3                          17                           176
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(XP11.4) MUTATED        2      4      7     19      1      0
  AMP PEAK 10(XP11.4) WILD-TYPE    115     29    176    113     34     25
D10V8, multiclass
        clus
vv       AMP PEAK 10(XP11.4) MUTATED AMP PEAK 10(XP11.4) WILD-TYPE
  CLUS_1                           2                           115
  CLUS_2                           4                            29
  CLUS_3                           7                           176
  CLUS_4                          19                           113
  CLUS_5                           1                            34
  CLUS_6                           0                            25
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(XP11.4) MUTATED        6      8     18
  AMP PEAK 10(XP11.4) WILD-TYPE    118    196    164
D10V9, multiclass
        clus
vv       AMP PEAK 10(XP11.4) MUTATED AMP PEAK 10(XP11.4) WILD-TYPE
  CLUS_1                           6                           118
  CLUS_2                           8                           196
  CLUS_3                          18                           164
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(XP11.4) MUTATED       14      8      9      1
  AMP PEAK 10(XP11.4) WILD-TYPE    130    126    186     36
D10V10, multiclass
        clus
vv       AMP PEAK 10(XP11.4) MUTATED AMP PEAK 10(XP11.4) WILD-TYPE
  CLUS_1                          14                           130
  CLUS_2                           8                           126
  CLUS_3                           9                           186
  CLUS_4                           1                            36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(XP11.4) MUTATED        1      1      2      3
  AMP PEAK 10(XP11.4) WILD-TYPE     37     20     46     32
D10V11, multiclass
        clus
vv       AMP PEAK 10(XP11.4) MUTATED AMP PEAK 10(XP11.4) WILD-TYPE
  CLUS_1                           1                            37
  CLUS_2                           1                            20
  CLUS_3                           2                            46
  CLUS_4                           3                            32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(XP11.4) MUTATED        2      3      2
  AMP PEAK 10(XP11.4) WILD-TYPE     37     53     45
D10V12, multiclass
        clus
vv       AMP PEAK 10(XP11.4) MUTATED AMP PEAK 10(XP11.4) WILD-TYPE
  CLUS_1                           2                            37
  CLUS_2                           3                            53
  CLUS_3                           2                            45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = AMP PEAK 11(XQ11.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(XQ11.2) MUTATED        2      0      2
  AMP PEAK 11(XQ11.2) WILD-TYPE     31     24     11
D11V1, multiclass
        clus
vv       AMP PEAK 11(XQ11.2) MUTATED AMP PEAK 11(XQ11.2) WILD-TYPE
  CLUS_1                           2                            31
  CLUS_2                           0                            24
  CLUS_3                           2                            11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(XQ11.2) MUTATED        0      0      1      0      2      0
  AMP PEAK 11(XQ11.2) WILD-TYPE     11     12      3     11     11      9
                               vv
clus                            CLUS_7
  AMP PEAK 11(XQ11.2) MUTATED        1
  AMP PEAK 11(XQ11.2) WILD-TYPE      9
D11V2, multiclass
        clus
vv       AMP PEAK 11(XQ11.2) MUTATED AMP PEAK 11(XQ11.2) WILD-TYPE
  CLUS_1                           0                            11
  CLUS_2                           0                            12
  CLUS_3                           1                             3
  CLUS_4                           0                            11
  CLUS_5                           2                            11
  CLUS_6                           0                             9
  CLUS_7                           1                             9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(XQ11.2) MUTATED        9      7     13
  AMP PEAK 11(XQ11.2) WILD-TYPE    229    128    142
D11V3, multiclass
        clus
vv       AMP PEAK 11(XQ11.2) MUTATED AMP PEAK 11(XQ11.2) WILD-TYPE
  CLUS_1                           9                           229
  CLUS_2                           7                           128
  CLUS_3                          13                           142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(XQ11.2) MUTATED        2      4      5
  AMP PEAK 11(XQ11.2) WILD-TYPE    126     72    105
D11V4, multiclass
        clus
vv       AMP PEAK 11(XQ11.2) MUTATED AMP PEAK 11(XQ11.2) WILD-TYPE
  CLUS_1                           2                           126
  CLUS_2                           4                            72
  CLUS_3                           5                           105
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(XQ11.2) MUTATED        2      4      5      8      3      1
  AMP PEAK 11(XQ11.2) WILD-TYPE    106     58     70     72     76     42
D11V5, multiclass
        clus
vv       AMP PEAK 11(XQ11.2) MUTATED AMP PEAK 11(XQ11.2) WILD-TYPE
  CLUS_1                           2                           106
  CLUS_2                           4                            58
  CLUS_3                           5                            70
  CLUS_4                           8                            72
  CLUS_5                           3                            76
  CLUS_6                           1                            42
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(XQ11.2) MUTATED        2      9     12
  AMP PEAK 11(XQ11.2) WILD-TYPE    119    187    118
D11V6, multiclass
        clus
vv       AMP PEAK 11(XQ11.2) MUTATED AMP PEAK 11(XQ11.2) WILD-TYPE
  CLUS_1                           2                           119
  CLUS_2                           9                           187
  CLUS_3                          12                           118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(XQ11.2) MUTATED        9      8     12
  AMP PEAK 11(XQ11.2) WILD-TYPE    102    213    181
D11V7, multiclass
        clus
vv       AMP PEAK 11(XQ11.2) MUTATED AMP PEAK 11(XQ11.2) WILD-TYPE
  CLUS_1                           9                           102
  CLUS_2                           8                           213
  CLUS_3                          12                           181
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(XQ11.2) MUTATED        4      3      8     12      1      1
  AMP PEAK 11(XQ11.2) WILD-TYPE    113     30    175    120     34     24
D11V8, multiclass
        clus
vv       AMP PEAK 11(XQ11.2) MUTATED AMP PEAK 11(XQ11.2) WILD-TYPE
  CLUS_1                           4                           113
  CLUS_2                           3                            30
  CLUS_3                           8                           175
  CLUS_4                          12                           120
  CLUS_5                           1                            34
  CLUS_6                           1                            24
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(XQ11.2) MUTATED        5      8     15
  AMP PEAK 11(XQ11.2) WILD-TYPE    119    196    167
D11V9, multiclass
        clus
vv       AMP PEAK 11(XQ11.2) MUTATED AMP PEAK 11(XQ11.2) WILD-TYPE
  CLUS_1                           5                           119
  CLUS_2                           8                           196
  CLUS_3                          15                           167
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(XQ11.2) MUTATED       12      6      9      1
  AMP PEAK 11(XQ11.2) WILD-TYPE    132    128    186     36
D11V10, multiclass
        clus
vv       AMP PEAK 11(XQ11.2) MUTATED AMP PEAK 11(XQ11.2) WILD-TYPE
  CLUS_1                          12                           132
  CLUS_2                           6                           128
  CLUS_3                           9                           186
  CLUS_4                           1                            36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(XQ11.2) MUTATED        1      0      1      3
  AMP PEAK 11(XQ11.2) WILD-TYPE     37     21     47     32
D11V11, multiclass
        clus
vv       AMP PEAK 11(XQ11.2) MUTATED AMP PEAK 11(XQ11.2) WILD-TYPE
  CLUS_1                           1                            37
  CLUS_2                           0                            21
  CLUS_3                           1                            47
  CLUS_4                           3                            32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(XQ11.2) MUTATED        2      2      1
  AMP PEAK 11(XQ11.2) WILD-TYPE     37     54     46
D11V12, multiclass
        clus
vv       AMP PEAK 11(XQ11.2) MUTATED AMP PEAK 11(XQ11.2) WILD-TYPE
  CLUS_1                           2                            37
  CLUS_2                           2                            54
  CLUS_3                           1                            46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = AMP PEAK 12(XQ28) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(XQ28) MUTATED        2      1      2
  AMP PEAK 12(XQ28) WILD-TYPE     31     23     11
D12V1, multiclass
        clus
vv       AMP PEAK 12(XQ28) MUTATED AMP PEAK 12(XQ28) WILD-TYPE
  CLUS_1                         2                          31
  CLUS_2                         1                          23
  CLUS_3                         2                          11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 12(XQ28) MUTATED        1      0      0      1      1      0      2
  AMP PEAK 12(XQ28) WILD-TYPE     10     12      4     10     12      9      8
D12V2, multiclass
        clus
vv       AMP PEAK 12(XQ28) MUTATED AMP PEAK 12(XQ28) WILD-TYPE
  CLUS_1                         1                          10
  CLUS_2                         0                          12
  CLUS_3                         0                           4
  CLUS_4                         1                          10
  CLUS_5                         1                          12
  CLUS_6                         0                           9
  CLUS_7                         2                           8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(XQ28) MUTATED       13      8     16
  AMP PEAK 12(XQ28) WILD-TYPE    225    127    139
D12V3, multiclass
        clus
vv       AMP PEAK 12(XQ28) MUTATED AMP PEAK 12(XQ28) WILD-TYPE
  CLUS_1                        13                         225
  CLUS_2                         8                         127
  CLUS_3                        16                         139
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(XQ28) MUTATED        7      6      9
  AMP PEAK 12(XQ28) WILD-TYPE    121     70    101
D12V4, multiclass
        clus
vv       AMP PEAK 12(XQ28) MUTATED AMP PEAK 12(XQ28) WILD-TYPE
  CLUS_1                         7                         121
  CLUS_2                         6                          70
  CLUS_3                         9                         101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(XQ28) MUTATED        4      5      8      9      4      1
  AMP PEAK 12(XQ28) WILD-TYPE    104     57     67     71     75     42
D12V5, multiclass
        clus
vv       AMP PEAK 12(XQ28) MUTATED AMP PEAK 12(XQ28) WILD-TYPE
  CLUS_1                         4                         104
  CLUS_2                         5                          57
  CLUS_3                         8                          67
  CLUS_4                         9                          71
  CLUS_5                         4                          75
  CLUS_6                         1                          42
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(XQ28) MUTATED        8      9     14
  AMP PEAK 12(XQ28) WILD-TYPE    113    187    116
D12V6, multiclass
        clus
vv       AMP PEAK 12(XQ28) MUTATED AMP PEAK 12(XQ28) WILD-TYPE
  CLUS_1                         8                         113
  CLUS_2                         9                         187
  CLUS_3                        14                         116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(XQ28) MUTATED        9      9     18
  AMP PEAK 12(XQ28) WILD-TYPE    102    212    175
D12V7, multiclass
        clus
vv       AMP PEAK 12(XQ28) MUTATED AMP PEAK 12(XQ28) WILD-TYPE
  CLUS_1                         9                         102
  CLUS_2                         9                         212
  CLUS_3                        18                         175
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(XQ28) MUTATED        5      2      9     14      6      0
  AMP PEAK 12(XQ28) WILD-TYPE    112     31    174    118     29     25
D12V8, multiclass
        clus
vv       AMP PEAK 12(XQ28) MUTATED AMP PEAK 12(XQ28) WILD-TYPE
  CLUS_1                         5                         112
  CLUS_2                         2                          31
  CLUS_3                         9                         174
  CLUS_4                        14                         118
  CLUS_5                         6                          29
  CLUS_6                         0                          25
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(XQ28) MUTATED        9      9     18
  AMP PEAK 12(XQ28) WILD-TYPE    115    195    164
D12V9, multiclass
        clus
vv       AMP PEAK 12(XQ28) MUTATED AMP PEAK 12(XQ28) WILD-TYPE
  CLUS_1                         9                         115
  CLUS_2                         9                         195
  CLUS_3                        18                         164
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(XQ28) MUTATED       15      8     12      1
  AMP PEAK 12(XQ28) WILD-TYPE    129    126    183     36
D12V10, multiclass
        clus
vv       AMP PEAK 12(XQ28) MUTATED AMP PEAK 12(XQ28) WILD-TYPE
  CLUS_1                        15                         129
  CLUS_2                         8                         126
  CLUS_3                        12                         183
  CLUS_4                         1                          36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(XQ28) MUTATED        2      2      3      4
  AMP PEAK 12(XQ28) WILD-TYPE     36     19     45     31
D12V11, multiclass
        clus
vv       AMP PEAK 12(XQ28) MUTATED AMP PEAK 12(XQ28) WILD-TYPE
  CLUS_1                         2                          36
  CLUS_2                         2                          19
  CLUS_3                         3                          45
  CLUS_4                         4                          31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(XQ28) MUTATED        3      6      2
  AMP PEAK 12(XQ28) WILD-TYPE     36     50     45
D12V12, multiclass
        clus
vv       AMP PEAK 12(XQ28) MUTATED AMP PEAK 12(XQ28) WILD-TYPE
  CLUS_1                         3                          36
  CLUS_2                         6                          50
  CLUS_3                         2                          45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = DEL PEAK  1(1P36.23) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.23) MUTATED        2      8      8
  DEL PEAK  1(1P36.23) WILD-TYPE     31     16      5
D13V1, multiclass
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                            2                             31
  CLUS_2                            8                             16
  CLUS_3                            8                              5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.23) MUTATED        0      2      2      5      1      1
  DEL PEAK  1(1P36.23) WILD-TYPE     11     10      2      6     12      8
                                vv
clus                             CLUS_7
  DEL PEAK  1(1P36.23) MUTATED        7
  DEL PEAK  1(1P36.23) WILD-TYPE      3
D13V2, multiclass
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                            0                             11
  CLUS_2                            2                             10
  CLUS_3                            2                              2
  CLUS_4                            5                              6
  CLUS_5                            1                             12
  CLUS_6                            1                              8
  CLUS_7                            7                              3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.23) MUTATED       13     37     53
  DEL PEAK  1(1P36.23) WILD-TYPE    225     98    102
D13V3, multiclass
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                           13                            225
  CLUS_2                           37                             98
  CLUS_3                           53                            102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.23) MUTATED       17     17     26
  DEL PEAK  1(1P36.23) WILD-TYPE    111     59     84
D13V4, multiclass
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                           17                            111
  CLUS_2                           17                             59
  CLUS_3                           26                             84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.23) MUTATED       10     20     20     26      7      6
  DEL PEAK  1(1P36.23) WILD-TYPE     98     42     55     54     72     37
D13V5, multiclass
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                           10                             98
  CLUS_2                           20                             42
  CLUS_3                           20                             55
  CLUS_4                           26                             54
  CLUS_5                            7                             72
  CLUS_6                            6                             37
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.23) MUTATED       26     22     41
  DEL PEAK  1(1P36.23) WILD-TYPE     95    174     89
D13V6, multiclass
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                           26                             95
  CLUS_2                           22                            174
  CLUS_3                           41                             89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.23) MUTATED       21     26     56
  DEL PEAK  1(1P36.23) WILD-TYPE     90    195    137
D13V7, multiclass
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                           21                             90
  CLUS_2                           26                            195
  CLUS_3                           56                            137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.23) MUTATED       11      6     23     41     10     12
  DEL PEAK  1(1P36.23) WILD-TYPE    106     27    160     91     25     13
D13V8, multiclass
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                           11                            106
  CLUS_2                            6                             27
  CLUS_3                           23                            160
  CLUS_4                           41                             91
  CLUS_5                           10                             25
  CLUS_6                           12                             13
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.23) MUTATED       19     23     61
  DEL PEAK  1(1P36.23) WILD-TYPE    105    181    121
D13V9, multiclass
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                           19                            105
  CLUS_2                           23                            181
  CLUS_3                           61                            121
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.23) MUTATED       32     34     25     12
  DEL PEAK  1(1P36.23) WILD-TYPE    112    100    170     25
D13V10, multiclass
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                           32                            112
  CLUS_2                           34                            100
  CLUS_3                           25                            170
  CLUS_4                           12                             25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.23) MUTATED        8      3      3     11
  DEL PEAK  1(1P36.23) WILD-TYPE     30     18     45     24
D13V11, multiclass
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                            8                             30
  CLUS_2                            3                             18
  CLUS_3                            3                             45
  CLUS_4                           11                             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.23) MUTATED        8     12      5
  DEL PEAK  1(1P36.23) WILD-TYPE     31     44     42
D13V12, multiclass
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                            8                             31
  CLUS_2                           12                             44
  CLUS_3                            5                             42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = DEL PEAK  2(1P31.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P31.1) MUTATED        2      5      7
  DEL PEAK  2(1P31.1) WILD-TYPE     31     19      6
D14V1, multiclass
        clus
vv       DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                           2                            31
  CLUS_2                           5                            19
  CLUS_3                           7                             6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1P31.1) MUTATED        0      3      2      1      1      1
  DEL PEAK  2(1P31.1) WILD-TYPE     11      9      2     10     12      8
                               vv
clus                            CLUS_7
  DEL PEAK  2(1P31.1) MUTATED        6
  DEL PEAK  2(1P31.1) WILD-TYPE      4
D14V2, multiclass
        clus
vv       DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                           0                            11
  CLUS_2                           3                             9
  CLUS_3                           2                             2
  CLUS_4                           1                            10
  CLUS_5                           1                            12
  CLUS_6                           1                             8
  CLUS_7                           6                             4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P31.1) MUTATED        8     29     40
  DEL PEAK  2(1P31.1) WILD-TYPE    230    106    115
D14V3, multiclass
        clus
vv       DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                           8                           230
  CLUS_2                          29                           106
  CLUS_3                          40                           115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P31.1) MUTATED       12     10     21
  DEL PEAK  2(1P31.1) WILD-TYPE    116     66     89
D14V4, multiclass
        clus
vv       DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                          12                           116
  CLUS_2                          10                            66
  CLUS_3                          21                            89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1P31.1) MUTATED        9     16     12     21      4      5
  DEL PEAK  2(1P31.1) WILD-TYPE     99     46     63     59     75     38
D14V5, multiclass
        clus
vv       DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                           9                            99
  CLUS_2                          16                            46
  CLUS_3                          12                            63
  CLUS_4                          21                            59
  CLUS_5                           4                            75
  CLUS_6                           5                            38
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P31.1) MUTATED       20     17     30
  DEL PEAK  2(1P31.1) WILD-TYPE    101    179    100
D14V6, multiclass
        clus
vv       DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                          20                           101
  CLUS_2                          17                           179
  CLUS_3                          30                           100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P31.1) MUTATED       20     21     36
  DEL PEAK  2(1P31.1) WILD-TYPE     91    200    157
D14V7, multiclass
        clus
vv       DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                          20                            91
  CLUS_2                          21                           200
  CLUS_3                          36                           157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1P31.1) MUTATED       11      6     16     28      4     12
  DEL PEAK  2(1P31.1) WILD-TYPE    106     27    167    104     31     13
D14V8, multiclass
        clus
vv       DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                          11                           106
  CLUS_2                           6                            27
  CLUS_3                          16                           167
  CLUS_4                          28                           104
  CLUS_5                           4                            31
  CLUS_6                          12                            13
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P31.1) MUTATED       10     20     47
  DEL PEAK  2(1P31.1) WILD-TYPE    114    184    135
D14V9, multiclass
        clus
vv       DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                          10                           114
  CLUS_2                          20                           184
  CLUS_3                          47                           135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P31.1) MUTATED       17     33     20      7
  DEL PEAK  2(1P31.1) WILD-TYPE    127    101    175     30
D14V10, multiclass
        clus
vv       DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                          17                           127
  CLUS_2                          33                           101
  CLUS_3                          20                           175
  CLUS_4                           7                            30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P31.1) MUTATED        6      0      2      9
  DEL PEAK  2(1P31.1) WILD-TYPE     32     21     46     26
D14V11, multiclass
        clus
vv       DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                           6                            32
  CLUS_2                           0                            21
  CLUS_3                           2                            46
  CLUS_4                           9                            26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P31.1) MUTATED        6      7      4
  DEL PEAK  2(1P31.1) WILD-TYPE     33     49     43
D14V12, multiclass
        clus
vv       DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                           6                            33
  CLUS_2                           7                            49
  CLUS_3                           4                            43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = DEL PEAK  3(1Q43) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q43) MUTATED        2      1      5
  DEL PEAK  3(1Q43) WILD-TYPE     31     23      8
D15V1, multiclass
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                         2                          31
  CLUS_2                         1                          23
  CLUS_3                         5                           8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK  3(1Q43) MUTATED        0      1      0      0      1      1      5
  DEL PEAK  3(1Q43) WILD-TYPE     11     11      4     11     12      8      5
D15V2, multiclass
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                         0                          11
  CLUS_2                         1                          11
  CLUS_3                         0                           4
  CLUS_4                         0                          11
  CLUS_5                         1                          12
  CLUS_6                         1                           8
  CLUS_7                         5                           5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q43) MUTATED        7     22     13
  DEL PEAK  3(1Q43) WILD-TYPE    231    113    142
D15V3, multiclass
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                         7                         231
  CLUS_2                        22                         113
  CLUS_3                        13                         142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q43) MUTATED       12      3      9
  DEL PEAK  3(1Q43) WILD-TYPE    116     73    101
D15V4, multiclass
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                        12                         116
  CLUS_2                         3                          73
  CLUS_3                         9                         101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(1Q43) MUTATED        9      5      4     13      1      3
  DEL PEAK  3(1Q43) WILD-TYPE     99     57     71     67     78     40
D15V5, multiclass
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                         9                          99
  CLUS_2                         5                          57
  CLUS_3                         4                          71
  CLUS_4                        13                          67
  CLUS_5                         1                          78
  CLUS_6                         3                          40
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q43) MUTATED        9     10     16
  DEL PEAK  3(1Q43) WILD-TYPE    112    186    114
D15V6, multiclass
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                         9                         112
  CLUS_2                        10                         186
  CLUS_3                        16                         114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q43) MUTATED       17     16      9
  DEL PEAK  3(1Q43) WILD-TYPE     94    205    184
D15V7, multiclass
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                        17                          94
  CLUS_2                        16                         205
  CLUS_3                         9                         184
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(1Q43) MUTATED        6      1     13      9      2     11
  DEL PEAK  3(1Q43) WILD-TYPE    111     32    170    123     33     14
D15V8, multiclass
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                         6                         111
  CLUS_2                         1                          32
  CLUS_3                        13                         170
  CLUS_4                         9                         123
  CLUS_5                         2                          33
  CLUS_6                        11                          14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q43) MUTATED        6     15     21
  DEL PEAK  3(1Q43) WILD-TYPE    118    189    161
D15V9, multiclass
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                         6                         118
  CLUS_2                        15                         189
  CLUS_3                        21                         161
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1Q43) MUTATED       10     19     13      0
  DEL PEAK  3(1Q43) WILD-TYPE    134    115    182     37
D15V10, multiclass
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                        10                         134
  CLUS_2                        19                         115
  CLUS_3                        13                         182
  CLUS_4                         0                          37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1Q43) MUTATED        5      0      4      5
  DEL PEAK  3(1Q43) WILD-TYPE     33     21     44     30
D15V11, multiclass
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                         5                          33
  CLUS_2                         0                          21
  CLUS_3                         4                          44
  CLUS_4                         5                          30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q43) MUTATED        5      5      4
  DEL PEAK  3(1Q43) WILD-TYPE     34     51     43
D15V12, multiclass
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                         5                          34
  CLUS_2                         5                          51
  CLUS_3                         4                          43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = DEL PEAK  4(2Q37.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.3) MUTATED        1      4      6
  DEL PEAK  4(2Q37.3) WILD-TYPE     32     20      7
D16V1, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           1                            32
  CLUS_2                           4                            20
  CLUS_3                           6                             7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(2Q37.3) MUTATED        0      4      0      0      1      0
  DEL PEAK  4(2Q37.3) WILD-TYPE     11      8      4     11     12      9
                               vv
clus                            CLUS_7
  DEL PEAK  4(2Q37.3) MUTATED        6
  DEL PEAK  4(2Q37.3) WILD-TYPE      4
D16V2, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           0                            11
  CLUS_2                           4                             8
  CLUS_3                           0                             4
  CLUS_4                           0                            11
  CLUS_5                           1                            12
  CLUS_6                           0                             9
  CLUS_7                           6                             4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.3) MUTATED       21     12     17
  DEL PEAK  4(2Q37.3) WILD-TYPE    217    123    138
D16V3, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          21                           217
  CLUS_2                          12                           123
  CLUS_3                          17                           138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.3) MUTATED       12      5     12
  DEL PEAK  4(2Q37.3) WILD-TYPE    116     71     98
D16V4, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          12                           116
  CLUS_2                           5                            71
  CLUS_3                          12                            98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(2Q37.3) MUTATED        5      8      4     10      8      4
  DEL PEAK  4(2Q37.3) WILD-TYPE    103     54     71     70     71     39
D16V5, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           5                           103
  CLUS_2                           8                            54
  CLUS_3                           4                            71
  CLUS_4                          10                            70
  CLUS_5                           8                            71
  CLUS_6                           4                            39
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.3) MUTATED        7     15     17
  DEL PEAK  4(2Q37.3) WILD-TYPE    114    181    113
D16V6, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           7                           114
  CLUS_2                          15                           181
  CLUS_3                          17                           113
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.3) MUTATED       21      9     19
  DEL PEAK  4(2Q37.3) WILD-TYPE     90    212    174
D16V7, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          21                            90
  CLUS_2                           9                           212
  CLUS_3                          19                           174
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(2Q37.3) MUTATED       13      1      7     18      1      9
  DEL PEAK  4(2Q37.3) WILD-TYPE    104     32    176    114     34     16
D16V8, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          13                           104
  CLUS_2                           1                            32
  CLUS_3                           7                           176
  CLUS_4                          18                           114
  CLUS_5                           1                            34
  CLUS_6                           9                            16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.3) MUTATED       11     11     26
  DEL PEAK  4(2Q37.3) WILD-TYPE    113    193    156
D16V9, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          11                           113
  CLUS_2                          11                           193
  CLUS_3                          26                           156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q37.3) MUTATED       13     20     12      3
  DEL PEAK  4(2Q37.3) WILD-TYPE    131    114    183     34
D16V10, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          13                           131
  CLUS_2                          20                           114
  CLUS_3                          12                           183
  CLUS_4                           3                            34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q37.3) MUTATED        6      1      2      2
  DEL PEAK  4(2Q37.3) WILD-TYPE     32     20     46     33
D16V11, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           6                            32
  CLUS_2                           1                            20
  CLUS_3                           2                            46
  CLUS_4                           2                            33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.3) MUTATED        6      3      2
  DEL PEAK  4(2Q37.3) WILD-TYPE     33     53     45
D16V12, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           6                            33
  CLUS_2                           3                            53
  CLUS_3                           2                            45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = DEL PEAK  5(3P26.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P26.3) MUTATED       32     22      3
  DEL PEAK  5(3P26.3) WILD-TYPE      1      2     10
D17V1, multiclass
        clus
vv       DEL PEAK  5(3P26.3) MUTATED DEL PEAK  5(3P26.3) WILD-TYPE
  CLUS_1                          32                             1
  CLUS_2                          22                             2
  CLUS_3                           3                            10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(3P26.3) MUTATED       11     11      1     11     12      9
  DEL PEAK  5(3P26.3) WILD-TYPE      0      1      3      0      1      0
                               vv
clus                            CLUS_7
  DEL PEAK  5(3P26.3) MUTATED        2
  DEL PEAK  5(3P26.3) WILD-TYPE      8
D17V2, multiclass
        clus
vv       DEL PEAK  5(3P26.3) MUTATED DEL PEAK  5(3P26.3) WILD-TYPE
  CLUS_1                          11                             0
  CLUS_2                          11                             1
  CLUS_3                           1                             3
  CLUS_4                          11                             0
  CLUS_5                          12                             1
  CLUS_6                           9                             0
  CLUS_7                           2                             8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P26.3) MUTATED      236     69    150
  DEL PEAK  5(3P26.3) WILD-TYPE      2     66      5
D17V3, multiclass
        clus
vv       DEL PEAK  5(3P26.3) MUTATED DEL PEAK  5(3P26.3) WILD-TYPE
  CLUS_1                         236                             2
  CLUS_2                          69                            66
  CLUS_3                         150                             5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P26.3) MUTATED      118     50    103
  DEL PEAK  5(3P26.3) WILD-TYPE     10     26      7
D17V4, multiclass
        clus
vv       DEL PEAK  5(3P26.3) MUTATED DEL PEAK  5(3P26.3) WILD-TYPE
  CLUS_1                         118                            10
  CLUS_2                          50                            26
  CLUS_3                         103                             7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(3P26.3) MUTATED      106     54     67     60     64     39
  DEL PEAK  5(3P26.3) WILD-TYPE      2      8      8     20     15      4
D17V5, multiclass
        clus
vv       DEL PEAK  5(3P26.3) MUTATED DEL PEAK  5(3P26.3) WILD-TYPE
  CLUS_1                         106                             2
  CLUS_2                          54                             8
  CLUS_3                          67                             8
  CLUS_4                          60                            20
  CLUS_5                          64                            15
  CLUS_6                          39                             4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P26.3) MUTATED      112    172    106
  DEL PEAK  5(3P26.3) WILD-TYPE      9     24     24
D17V6, multiclass
        clus
vv       DEL PEAK  5(3P26.3) MUTATED DEL PEAK  5(3P26.3) WILD-TYPE
  CLUS_1                         112                             9
  CLUS_2                         172                            24
  CLUS_3                         106                            24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P26.3) MUTATED       70    211    171
  DEL PEAK  5(3P26.3) WILD-TYPE     41     10     22
D17V7, multiclass
        clus
vv       DEL PEAK  5(3P26.3) MUTATED DEL PEAK  5(3P26.3) WILD-TYPE
  CLUS_1                          70                            41
  CLUS_2                         211                            10
  CLUS_3                         171                            22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(3P26.3) MUTATED      108     20    175    114     33      2
  DEL PEAK  5(3P26.3) WILD-TYPE      9     13      8     18      2     23
D17V8, multiclass
        clus
vv       DEL PEAK  5(3P26.3) MUTATED DEL PEAK  5(3P26.3) WILD-TYPE
  CLUS_1                         108                             9
  CLUS_2                          20                            13
  CLUS_3                         175                             8
  CLUS_4                         114                            18
  CLUS_5                          33                             2
  CLUS_6                           2                            23
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P26.3) MUTATED      103    191    144
  DEL PEAK  5(3P26.3) WILD-TYPE     21     13     38
D17V9, multiclass
        clus
vv       DEL PEAK  5(3P26.3) MUTATED DEL PEAK  5(3P26.3) WILD-TYPE
  CLUS_1                         103                            21
  CLUS_2                         191                            13
  CLUS_3                         144                            38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(3P26.3) MUTATED      112    108    184     34
  DEL PEAK  5(3P26.3) WILD-TYPE     32     26     11      3
D17V10, multiclass
        clus
vv       DEL PEAK  5(3P26.3) MUTATED DEL PEAK  5(3P26.3) WILD-TYPE
  CLUS_1                         112                            32
  CLUS_2                         108                            26
  CLUS_3                         184                            11
  CLUS_4                          34                             3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(3P26.3) MUTATED       27     14     46     28
  DEL PEAK  5(3P26.3) WILD-TYPE     11      7      2      7
D17V11, multiclass
        clus
vv       DEL PEAK  5(3P26.3) MUTATED DEL PEAK  5(3P26.3) WILD-TYPE
  CLUS_1                          27                            11
  CLUS_2                          14                             7
  CLUS_3                          46                             2
  CLUS_4                          28                             7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P26.3) MUTATED       27     44     44
  DEL PEAK  5(3P26.3) WILD-TYPE     12     12      3
D17V12, multiclass
        clus
vv       DEL PEAK  5(3P26.3) MUTATED DEL PEAK  5(3P26.3) WILD-TYPE
  CLUS_1                          27                            12
  CLUS_2                          44                            12
  CLUS_3                          44                             3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = DEL PEAK  6(3P22.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P22.2) MUTATED       32     22      3
  DEL PEAK  6(3P22.2) WILD-TYPE      1      2     10
D18V1, multiclass
        clus
vv       DEL PEAK  6(3P22.2) MUTATED DEL PEAK  6(3P22.2) WILD-TYPE
  CLUS_1                          32                             1
  CLUS_2                          22                             2
  CLUS_3                           3                            10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(3P22.2) MUTATED       11     11      1     11     12      9
  DEL PEAK  6(3P22.2) WILD-TYPE      0      1      3      0      1      0
                               vv
clus                            CLUS_7
  DEL PEAK  6(3P22.2) MUTATED        2
  DEL PEAK  6(3P22.2) WILD-TYPE      8
D18V2, multiclass
        clus
vv       DEL PEAK  6(3P22.2) MUTATED DEL PEAK  6(3P22.2) WILD-TYPE
  CLUS_1                          11                             0
  CLUS_2                          11                             1
  CLUS_3                           1                             3
  CLUS_4                          11                             0
  CLUS_5                          12                             1
  CLUS_6                           9                             0
  CLUS_7                           2                             8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P22.2) MUTATED      238     75    152
  DEL PEAK  6(3P22.2) WILD-TYPE      0     60      3
D18V3, multiclass
        clus
vv       DEL PEAK  6(3P22.2) MUTATED DEL PEAK  6(3P22.2) WILD-TYPE
  CLUS_1                         238                             0
  CLUS_2                          75                            60
  CLUS_3                         152                             3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P22.2) MUTATED      119     52    106
  DEL PEAK  6(3P22.2) WILD-TYPE      9     24      4
D18V4, multiclass
        clus
vv       DEL PEAK  6(3P22.2) MUTATED DEL PEAK  6(3P22.2) WILD-TYPE
  CLUS_1                         119                             9
  CLUS_2                          52                            24
  CLUS_3                         106                             4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(3P22.2) MUTATED      107     59     66     63     65     40
  DEL PEAK  6(3P22.2) WILD-TYPE      1      3      9     17     14      3
D18V5, multiclass
        clus
vv       DEL PEAK  6(3P22.2) MUTATED DEL PEAK  6(3P22.2) WILD-TYPE
  CLUS_1                         107                             1
  CLUS_2                          59                             3
  CLUS_3                          66                             9
  CLUS_4                          63                            17
  CLUS_5                          65                            14
  CLUS_6                          40                             3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P22.2) MUTATED      113    177    110
  DEL PEAK  6(3P22.2) WILD-TYPE      8     19     20
D18V6, multiclass
        clus
vv       DEL PEAK  6(3P22.2) MUTATED DEL PEAK  6(3P22.2) WILD-TYPE
  CLUS_1                         113                             8
  CLUS_2                         177                            19
  CLUS_3                         110                            20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P22.2) MUTATED       70    216    176
  DEL PEAK  6(3P22.2) WILD-TYPE     41      5     17
D18V7, multiclass
        clus
vv       DEL PEAK  6(3P22.2) MUTATED DEL PEAK  6(3P22.2) WILD-TYPE
  CLUS_1                          70                            41
  CLUS_2                         216                             5
  CLUS_3                         176                            17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(3P22.2) MUTATED      110     19    179    116     35      3
  DEL PEAK  6(3P22.2) WILD-TYPE      7     14      4     16      0     22
D18V8, multiclass
        clus
vv       DEL PEAK  6(3P22.2) MUTATED DEL PEAK  6(3P22.2) WILD-TYPE
  CLUS_1                         110                             7
  CLUS_2                          19                            14
  CLUS_3                         179                             4
  CLUS_4                         116                            16
  CLUS_5                          35                             0
  CLUS_6                           3                            22
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P22.2) MUTATED      103    197    148
  DEL PEAK  6(3P22.2) WILD-TYPE     21      7     34
D18V9, multiclass
        clus
vv       DEL PEAK  6(3P22.2) MUTATED DEL PEAK  6(3P22.2) WILD-TYPE
  CLUS_1                         103                            21
  CLUS_2                         197                             7
  CLUS_3                         148                            34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3P22.2) MUTATED      114    111    187     36
  DEL PEAK  6(3P22.2) WILD-TYPE     30     23      8      1
D18V10, multiclass
        clus
vv       DEL PEAK  6(3P22.2) MUTATED DEL PEAK  6(3P22.2) WILD-TYPE
  CLUS_1                         114                            30
  CLUS_2                         111                            23
  CLUS_3                         187                             8
  CLUS_4                          36                             1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3P22.2) MUTATED       29     14     46     28
  DEL PEAK  6(3P22.2) WILD-TYPE      9      7      2      7
D18V11, multiclass
        clus
vv       DEL PEAK  6(3P22.2) MUTATED DEL PEAK  6(3P22.2) WILD-TYPE
  CLUS_1                          29                             9
  CLUS_2                          14                             7
  CLUS_3                          46                             2
  CLUS_4                          28                             7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P22.2) MUTATED       29     44     44
  DEL PEAK  6(3P22.2) WILD-TYPE     10     12      3
D18V12, multiclass
        clus
vv       DEL PEAK  6(3P22.2) MUTATED DEL PEAK  6(3P22.2) WILD-TYPE
  CLUS_1                          29                            10
  CLUS_2                          44                            12
  CLUS_3                          44                             3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = DEL PEAK  7(3P14.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3P14.1) MUTATED       22     19      3
  DEL PEAK  7(3P14.1) WILD-TYPE     11      5     10
D19V1, multiclass
        clus
vv       DEL PEAK  7(3P14.1) MUTATED DEL PEAK  7(3P14.1) WILD-TYPE
  CLUS_1                          22                            11
  CLUS_2                          19                             5
  CLUS_3                           3                            10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(3P14.1) MUTATED        8      9      1     10      7      7
  DEL PEAK  7(3P14.1) WILD-TYPE      3      3      3      1      6      2
                               vv
clus                            CLUS_7
  DEL PEAK  7(3P14.1) MUTATED        2
  DEL PEAK  7(3P14.1) WILD-TYPE      8
D19V2, multiclass
        clus
vv       DEL PEAK  7(3P14.1) MUTATED DEL PEAK  7(3P14.1) WILD-TYPE
  CLUS_1                           8                             3
  CLUS_2                           9                             3
  CLUS_3                           1                             3
  CLUS_4                          10                             1
  CLUS_5                           7                             6
  CLUS_6                           7                             2
  CLUS_7                           2                             8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3P14.1) MUTATED      199     32    142
  DEL PEAK  7(3P14.1) WILD-TYPE     39    103     13
D19V3, multiclass
        clus
vv       DEL PEAK  7(3P14.1) MUTATED DEL PEAK  7(3P14.1) WILD-TYPE
  CLUS_1                         199                            39
  CLUS_2                          32                           103
  CLUS_3                         142                            13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3P14.1) MUTATED       98     44     86
  DEL PEAK  7(3P14.1) WILD-TYPE     30     32     24
D19V4, multiclass
        clus
vv       DEL PEAK  7(3P14.1) MUTATED DEL PEAK  7(3P14.1) WILD-TYPE
  CLUS_1                          98                            30
  CLUS_2                          44                            32
  CLUS_3                          86                            24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(3P14.1) MUTATED       85     43     57     51     49     32
  DEL PEAK  7(3P14.1) WILD-TYPE     23     19     18     29     30     11
D19V5, multiclass
        clus
vv       DEL PEAK  7(3P14.1) MUTATED DEL PEAK  7(3P14.1) WILD-TYPE
  CLUS_1                          85                            23
  CLUS_2                          43                            19
  CLUS_3                          57                            18
  CLUS_4                          51                            29
  CLUS_5                          49                            30
  CLUS_6                          32                            11
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3P14.1) MUTATED       94    140     83
  DEL PEAK  7(3P14.1) WILD-TYPE     27     56     47
D19V6, multiclass
        clus
vv       DEL PEAK  7(3P14.1) MUTATED DEL PEAK  7(3P14.1) WILD-TYPE
  CLUS_1                          94                            27
  CLUS_2                         140                            56
  CLUS_3                          83                            47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3P14.1) MUTATED       49    175    147
  DEL PEAK  7(3P14.1) WILD-TYPE     62     46     46
D19V7, multiclass
        clus
vv       DEL PEAK  7(3P14.1) MUTATED DEL PEAK  7(3P14.1) WILD-TYPE
  CLUS_1                          49                            62
  CLUS_2                         175                            46
  CLUS_3                         147                            46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(3P14.1) MUTATED       90     14    140    100     25      2
  DEL PEAK  7(3P14.1) WILD-TYPE     27     19     43     32     10     23
D19V8, multiclass
        clus
vv       DEL PEAK  7(3P14.1) MUTATED DEL PEAK  7(3P14.1) WILD-TYPE
  CLUS_1                          90                            27
  CLUS_2                          14                            19
  CLUS_3                         140                            43
  CLUS_4                         100                            32
  CLUS_5                          25                            10
  CLUS_6                           2                            23
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3P14.1) MUTATED       80    154    126
  DEL PEAK  7(3P14.1) WILD-TYPE     44     50     56
D19V9, multiclass
        clus
vv       DEL PEAK  7(3P14.1) MUTATED DEL PEAK  7(3P14.1) WILD-TYPE
  CLUS_1                          80                            44
  CLUS_2                         154                            50
  CLUS_3                         126                            56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3P14.1) MUTATED       89     91    149     31
  DEL PEAK  7(3P14.1) WILD-TYPE     55     43     46      6
D19V10, multiclass
        clus
vv       DEL PEAK  7(3P14.1) MUTATED DEL PEAK  7(3P14.1) WILD-TYPE
  CLUS_1                          89                            55
  CLUS_2                          91                            43
  CLUS_3                         149                            46
  CLUS_4                          31                             6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3P14.1) MUTATED       24     10     34     22
  DEL PEAK  7(3P14.1) WILD-TYPE     14     11     14     13
D19V11, multiclass
        clus
vv       DEL PEAK  7(3P14.1) MUTATED DEL PEAK  7(3P14.1) WILD-TYPE
  CLUS_1                          24                            14
  CLUS_2                          10                            11
  CLUS_3                          34                            14
  CLUS_4                          22                            13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3P14.1) MUTATED       24     37     29
  DEL PEAK  7(3P14.1) WILD-TYPE     15     19     18
D19V12, multiclass
        clus
vv       DEL PEAK  7(3P14.1) MUTATED DEL PEAK  7(3P14.1) WILD-TYPE
  CLUS_1                          24                            15
  CLUS_2                          37                            19
  CLUS_3                          29                            18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = DEL PEAK  8(3P12.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3P12.2) MUTATED       18     13      2
  DEL PEAK  8(3P12.2) WILD-TYPE     15     11     11
D20V1, multiclass
        clus
vv       DEL PEAK  8(3P12.2) MUTATED DEL PEAK  8(3P12.2) WILD-TYPE
  CLUS_1                          18                            15
  CLUS_2                          13                            11
  CLUS_3                           2                            11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(3P12.2) MUTATED        5      8      1      5      6      7
  DEL PEAK  8(3P12.2) WILD-TYPE      6      4      3      6      7      2
                               vv
clus                            CLUS_7
  DEL PEAK  8(3P12.2) MUTATED        1
  DEL PEAK  8(3P12.2) WILD-TYPE      9
D20V2, multiclass
        clus
vv       DEL PEAK  8(3P12.2) MUTATED DEL PEAK  8(3P12.2) WILD-TYPE
  CLUS_1                           5                             6
  CLUS_2                           8                             4
  CLUS_3                           1                             3
  CLUS_4                           5                             6
  CLUS_5                           6                             7
  CLUS_6                           7                             2
  CLUS_7                           1                             9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3P12.2) MUTATED      160     22    123
  DEL PEAK  8(3P12.2) WILD-TYPE     78    113     32
D20V3, multiclass
        clus
vv       DEL PEAK  8(3P12.2) MUTATED DEL PEAK  8(3P12.2) WILD-TYPE
  CLUS_1                         160                            78
  CLUS_2                          22                           113
  CLUS_3                         123                            32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3P12.2) MUTATED       82     35     71
  DEL PEAK  8(3P12.2) WILD-TYPE     46     41     39
D20V4, multiclass
        clus
vv       DEL PEAK  8(3P12.2) MUTATED DEL PEAK  8(3P12.2) WILD-TYPE
  CLUS_1                          82                            46
  CLUS_2                          35                            41
  CLUS_3                          71                            39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(3P12.2) MUTATED       61     38     50     45     39     27
  DEL PEAK  8(3P12.2) WILD-TYPE     47     24     25     35     40     16
D20V5, multiclass
        clus
vv       DEL PEAK  8(3P12.2) MUTATED DEL PEAK  8(3P12.2) WILD-TYPE
  CLUS_1                          61                            47
  CLUS_2                          38                            24
  CLUS_3                          50                            25
  CLUS_4                          45                            35
  CLUS_5                          39                            40
  CLUS_6                          27                            16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3P12.2) MUTATED       75    113     72
  DEL PEAK  8(3P12.2) WILD-TYPE     46     83     58
D20V6, multiclass
        clus
vv       DEL PEAK  8(3P12.2) MUTATED DEL PEAK  8(3P12.2) WILD-TYPE
  CLUS_1                          75                            46
  CLUS_2                         113                            83
  CLUS_3                          72                            58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3P12.2) MUTATED       47    134    123
  DEL PEAK  8(3P12.2) WILD-TYPE     64     87     70
D20V7, multiclass
        clus
vv       DEL PEAK  8(3P12.2) MUTATED DEL PEAK  8(3P12.2) WILD-TYPE
  CLUS_1                          47                            64
  CLUS_2                         134                            87
  CLUS_3                         123                            70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(3P12.2) MUTATED       75     13    109     84     21      2
  DEL PEAK  8(3P12.2) WILD-TYPE     42     20     74     48     14     23
D20V8, multiclass
        clus
vv       DEL PEAK  8(3P12.2) MUTATED DEL PEAK  8(3P12.2) WILD-TYPE
  CLUS_1                          75                            42
  CLUS_2                          13                            20
  CLUS_3                         109                            74
  CLUS_4                          84                            48
  CLUS_5                          21                            14
  CLUS_6                           2                            23
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3P12.2) MUTATED       64    124    106
  DEL PEAK  8(3P12.2) WILD-TYPE     60     80     76
D20V9, multiclass
        clus
vv       DEL PEAK  8(3P12.2) MUTATED DEL PEAK  8(3P12.2) WILD-TYPE
  CLUS_1                          64                            60
  CLUS_2                         124                            80
  CLUS_3                         106                            76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(3P12.2) MUTATED       70     80    118     26
  DEL PEAK  8(3P12.2) WILD-TYPE     74     54     77     11
D20V10, multiclass
        clus
vv       DEL PEAK  8(3P12.2) MUTATED DEL PEAK  8(3P12.2) WILD-TYPE
  CLUS_1                          70                            74
  CLUS_2                          80                            54
  CLUS_3                         118                            77
  CLUS_4                          26                            11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(3P12.2) MUTATED       19      9     29     20
  DEL PEAK  8(3P12.2) WILD-TYPE     19     12     19     15
D20V11, multiclass
        clus
vv       DEL PEAK  8(3P12.2) MUTATED DEL PEAK  8(3P12.2) WILD-TYPE
  CLUS_1                          19                            19
  CLUS_2                           9                            12
  CLUS_3                          29                            19
  CLUS_4                          20                            15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3P12.2) MUTATED       19     32     26
  DEL PEAK  8(3P12.2) WILD-TYPE     20     24     21
D20V12, multiclass
        clus
vv       DEL PEAK  8(3P12.2) MUTATED DEL PEAK  8(3P12.2) WILD-TYPE
  CLUS_1                          19                            20
  CLUS_2                          32                            24
  CLUS_3                          26                            21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = DEL PEAK  9(3Q11.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(3Q11.2) MUTATED       11      8      1
  DEL PEAK  9(3Q11.2) WILD-TYPE     22     16     12
D21V1, multiclass
        clus
vv       DEL PEAK  9(3Q11.2) MUTATED DEL PEAK  9(3Q11.2) WILD-TYPE
  CLUS_1                          11                            22
  CLUS_2                           8                            16
  CLUS_3                           1                            12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(3Q11.2) MUTATED        3      6      1      2      4      4
  DEL PEAK  9(3Q11.2) WILD-TYPE      8      6      3      9      9      5
                               vv
clus                            CLUS_7
  DEL PEAK  9(3Q11.2) MUTATED        0
  DEL PEAK  9(3Q11.2) WILD-TYPE     10
D21V2, multiclass
        clus
vv       DEL PEAK  9(3Q11.2) MUTATED DEL PEAK  9(3Q11.2) WILD-TYPE
  CLUS_1                           3                             8
  CLUS_2                           6                             6
  CLUS_3                           1                             3
  CLUS_4                           2                             9
  CLUS_5                           4                             9
  CLUS_6                           4                             5
  CLUS_7                           0                            10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(3Q11.2) MUTATED       83     13     65
  DEL PEAK  9(3Q11.2) WILD-TYPE    155    122     90
D21V3, multiclass
        clus
vv       DEL PEAK  9(3Q11.2) MUTATED DEL PEAK  9(3Q11.2) WILD-TYPE
  CLUS_1                          83                           155
  CLUS_2                          13                           122
  CLUS_3                          65                            90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(3Q11.2) MUTATED       45     15     38
  DEL PEAK  9(3Q11.2) WILD-TYPE     83     61     72
D21V4, multiclass
        clus
vv       DEL PEAK  9(3Q11.2) MUTATED DEL PEAK  9(3Q11.2) WILD-TYPE
  CLUS_1                          45                            83
  CLUS_2                          15                            61
  CLUS_3                          38                            72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(3Q11.2) MUTATED       32     20     28     25     22     14
  DEL PEAK  9(3Q11.2) WILD-TYPE     76     42     47     55     57     29
D21V5, multiclass
        clus
vv       DEL PEAK  9(3Q11.2) MUTATED DEL PEAK  9(3Q11.2) WILD-TYPE
  CLUS_1                          32                            76
  CLUS_2                          20                            42
  CLUS_3                          28                            47
  CLUS_4                          25                            55
  CLUS_5                          22                            57
  CLUS_6                          14                            29
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(3Q11.2) MUTATED       42     63     36
  DEL PEAK  9(3Q11.2) WILD-TYPE     79    133     94
D21V6, multiclass
        clus
vv       DEL PEAK  9(3Q11.2) MUTATED DEL PEAK  9(3Q11.2) WILD-TYPE
  CLUS_1                          42                            79
  CLUS_2                          63                           133
  CLUS_3                          36                            94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(3Q11.2) MUTATED       31     65     65
  DEL PEAK  9(3Q11.2) WILD-TYPE     80    156    128
D21V7, multiclass
        clus
vv       DEL PEAK  9(3Q11.2) MUTATED DEL PEAK  9(3Q11.2) WILD-TYPE
  CLUS_1                          31                            80
  CLUS_2                          65                           156
  CLUS_3                          65                           128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(3Q11.2) MUTATED       49      6     50     50      5      1
  DEL PEAK  9(3Q11.2) WILD-TYPE     68     27    133     82     30     24
D21V8, multiclass
        clus
vv       DEL PEAK  9(3Q11.2) MUTATED DEL PEAK  9(3Q11.2) WILD-TYPE
  CLUS_1                          49                            68
  CLUS_2                           6                            27
  CLUS_3                          50                           133
  CLUS_4                          50                            82
  CLUS_5                           5                            30
  CLUS_6                           1                            24
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(3Q11.2) MUTATED       33     66     57
  DEL PEAK  9(3Q11.2) WILD-TYPE     91    138    125
D21V9, multiclass
        clus
vv       DEL PEAK  9(3Q11.2) MUTATED DEL PEAK  9(3Q11.2) WILD-TYPE
  CLUS_1                          33                            91
  CLUS_2                          66                           138
  CLUS_3                          57                           125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(3Q11.2) MUTATED       37     39     62     18
  DEL PEAK  9(3Q11.2) WILD-TYPE    107     95    133     19
D21V10, multiclass
        clus
vv       DEL PEAK  9(3Q11.2) MUTATED DEL PEAK  9(3Q11.2) WILD-TYPE
  CLUS_1                          37                           107
  CLUS_2                          39                            95
  CLUS_3                          62                           133
  CLUS_4                          18                            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(3Q11.2) MUTATED        8      4     14     10
  DEL PEAK  9(3Q11.2) WILD-TYPE     30     17     34     25
D21V11, multiclass
        clus
vv       DEL PEAK  9(3Q11.2) MUTATED DEL PEAK  9(3Q11.2) WILD-TYPE
  CLUS_1                           8                            30
  CLUS_2                           4                            17
  CLUS_3                          14                            34
  CLUS_4                          10                            25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(3Q11.2) MUTATED        8     15     13
  DEL PEAK  9(3Q11.2) WILD-TYPE     31     41     34
D21V12, multiclass
        clus
vv       DEL PEAK  9(3Q11.2) MUTATED DEL PEAK  9(3Q11.2) WILD-TYPE
  CLUS_1                           8                            31
  CLUS_2                          15                            41
  CLUS_3                          13                            34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = DEL PEAK 10(4Q34.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(4Q34.3) MUTATED        6      5      0
  DEL PEAK 10(4Q34.3) WILD-TYPE     27     19     13
D22V1, multiclass
        clus
vv       DEL PEAK 10(4Q34.3) MUTATED DEL PEAK 10(4Q34.3) WILD-TYPE
  CLUS_1                           6                            27
  CLUS_2                           5                            19
  CLUS_3                           0                            13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(4Q34.3) MUTATED        1      3      0      2      4      1
  DEL PEAK 10(4Q34.3) WILD-TYPE     10      9      4      9      9      8
                               vv
clus                            CLUS_7
  DEL PEAK 10(4Q34.3) MUTATED        0
  DEL PEAK 10(4Q34.3) WILD-TYPE     10
D22V2, multiclass
        clus
vv       DEL PEAK 10(4Q34.3) MUTATED DEL PEAK 10(4Q34.3) WILD-TYPE
  CLUS_1                           1                            10
  CLUS_2                           3                             9
  CLUS_3                           0                             4
  CLUS_4                           2                             9
  CLUS_5                           4                             9
  CLUS_6                           1                             8
  CLUS_7                           0                            10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(4Q34.3) MUTATED       10     17     51
  DEL PEAK 10(4Q34.3) WILD-TYPE    228    118    104
D22V3, multiclass
        clus
vv       DEL PEAK 10(4Q34.3) MUTATED DEL PEAK 10(4Q34.3) WILD-TYPE
  CLUS_1                          10                           228
  CLUS_2                          17                           118
  CLUS_3                          51                           104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(4Q34.3) MUTATED       10      9     34
  DEL PEAK 10(4Q34.3) WILD-TYPE    118     67     76
D22V4, multiclass
        clus
vv       DEL PEAK 10(4Q34.3) MUTATED DEL PEAK 10(4Q34.3) WILD-TYPE
  CLUS_1                          10                           118
  CLUS_2                           9                            67
  CLUS_3                          34                            76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(4Q34.3) MUTATED       16     20     12     10     10      6
  DEL PEAK 10(4Q34.3) WILD-TYPE     92     42     63     70     69     37
D22V5, multiclass
        clus
vv       DEL PEAK 10(4Q34.3) MUTATED DEL PEAK 10(4Q34.3) WILD-TYPE
  CLUS_1                          16                            92
  CLUS_2                          20                            42
  CLUS_3                          12                            63
  CLUS_4                          10                            70
  CLUS_5                          10                            69
  CLUS_6                           6                            37
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(4Q34.3) MUTATED       22     21     31
  DEL PEAK 10(4Q34.3) WILD-TYPE     99    175     99
D22V6, multiclass
        clus
vv       DEL PEAK 10(4Q34.3) MUTATED DEL PEAK 10(4Q34.3) WILD-TYPE
  CLUS_1                          22                            99
  CLUS_2                          21                           175
  CLUS_3                          31                            99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(4Q34.3) MUTATED        8     25     45
  DEL PEAK 10(4Q34.3) WILD-TYPE    103    196    148
D22V7, multiclass
        clus
vv       DEL PEAK 10(4Q34.3) MUTATED DEL PEAK 10(4Q34.3) WILD-TYPE
  CLUS_1                           8                           103
  CLUS_2                          25                           196
  CLUS_3                          45                           148
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(4Q34.3) MUTATED       15      1     18     38      6      0
  DEL PEAK 10(4Q34.3) WILD-TYPE    102     32    165     94     29     25
D22V8, multiclass
        clus
vv       DEL PEAK 10(4Q34.3) MUTATED DEL PEAK 10(4Q34.3) WILD-TYPE
  CLUS_1                          15                           102
  CLUS_2                           1                            32
  CLUS_3                          18                           165
  CLUS_4                          38                            94
  CLUS_5                           6                            29
  CLUS_6                           0                            25
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(4Q34.3) MUTATED       17     25     35
  DEL PEAK 10(4Q34.3) WILD-TYPE    107    179    147
D22V9, multiclass
        clus
vv       DEL PEAK 10(4Q34.3) MUTATED DEL PEAK 10(4Q34.3) WILD-TYPE
  CLUS_1                          17                           107
  CLUS_2                          25                           179
  CLUS_3                          35                           147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(4Q34.3) MUTATED       23     15     26     13
  DEL PEAK 10(4Q34.3) WILD-TYPE    121    119    169     24
D22V10, multiclass
        clus
vv       DEL PEAK 10(4Q34.3) MUTATED DEL PEAK 10(4Q34.3) WILD-TYPE
  CLUS_1                          23                           121
  CLUS_2                          15                           119
  CLUS_3                          26                           169
  CLUS_4                          13                            24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(4Q34.3) MUTATED        3      4      6      9
  DEL PEAK 10(4Q34.3) WILD-TYPE     35     17     42     26
D22V11, multiclass
        clus
vv       DEL PEAK 10(4Q34.3) MUTATED DEL PEAK 10(4Q34.3) WILD-TYPE
  CLUS_1                           3                            35
  CLUS_2                           4                            17
  CLUS_3                           6                            42
  CLUS_4                           9                            26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(4Q34.3) MUTATED        3     15      4
  DEL PEAK 10(4Q34.3) WILD-TYPE     36     41     43
D22V12, multiclass
        clus
vv       DEL PEAK 10(4Q34.3) MUTATED DEL PEAK 10(4Q34.3) WILD-TYPE
  CLUS_1                           3                            36
  CLUS_2                          15                            41
  CLUS_3                           4                            43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = DEL PEAK 11(6Q26) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q26) MUTATED        7     12      8
  DEL PEAK 11(6Q26) WILD-TYPE     26     12      5
D23V1, multiclass
        clus
vv       DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  CLUS_1                         7                          26
  CLUS_2                        12                          12
  CLUS_3                         8                           5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 11(6Q26) MUTATED        2      7      1      5      3      2      7
  DEL PEAK 11(6Q26) WILD-TYPE      9      5      3      6     10      7      3
D23V2, multiclass
        clus
vv       DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  CLUS_1                         2                           9
  CLUS_2                         7                           5
  CLUS_3                         1                           3
  CLUS_4                         5                           6
  CLUS_5                         3                          10
  CLUS_6                         2                           7
  CLUS_7                         7                           3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q26) MUTATED       37     26     88
  DEL PEAK 11(6Q26) WILD-TYPE    201    109     67
D23V3, multiclass
        clus
vv       DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  CLUS_1                        37                         201
  CLUS_2                        26                         109
  CLUS_3                        88                          67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q26) MUTATED       27     14     39
  DEL PEAK 11(6Q26) WILD-TYPE    101     62     71
D23V4, multiclass
        clus
vv       DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  CLUS_1                        27                         101
  CLUS_2                        14                          62
  CLUS_3                        39                          71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(6Q26) MUTATED       35     30     25     23      9      8
  DEL PEAK 11(6Q26) WILD-TYPE     73     32     50     57     70     35
D23V5, multiclass
        clus
vv       DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  CLUS_1                        35                          73
  CLUS_2                        30                          32
  CLUS_3                        25                          50
  CLUS_4                        23                          57
  CLUS_5                         9                          70
  CLUS_6                         8                          35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q26) MUTATED       39     36     55
  DEL PEAK 11(6Q26) WILD-TYPE     82    160     75
D23V6, multiclass
        clus
vv       DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  CLUS_1                        39                          82
  CLUS_2                        36                         160
  CLUS_3                        55                          75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q26) MUTATED       22     54     73
  DEL PEAK 11(6Q26) WILD-TYPE     89    167    120
D23V7, multiclass
        clus
vv       DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  CLUS_1                        22                          89
  CLUS_2                        54                         167
  CLUS_3                        73                         120
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(6Q26) MUTATED       26      6     40     58     10      9
  DEL PEAK 11(6Q26) WILD-TYPE     91     27    143     74     25     16
D23V8, multiclass
        clus
vv       DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  CLUS_1                        26                          91
  CLUS_2                         6                          27
  CLUS_3                        40                         143
  CLUS_4                        58                          74
  CLUS_5                        10                          25
  CLUS_6                         9                          16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q26) MUTATED       25     43     79
  DEL PEAK 11(6Q26) WILD-TYPE     99    161    103
D23V9, multiclass
        clus
vv       DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  CLUS_1                        25                          99
  CLUS_2                        43                         161
  CLUS_3                        79                         103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(6Q26) MUTATED       38     50     40     19
  DEL PEAK 11(6Q26) WILD-TYPE    106     84    155     18
D23V10, multiclass
        clus
vv       DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  CLUS_1                        38                         106
  CLUS_2                        50                          84
  CLUS_3                        40                         155
  CLUS_4                        19                          18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(6Q26) MUTATED        7      2     12     15
  DEL PEAK 11(6Q26) WILD-TYPE     31     19     36     20
D23V11, multiclass
        clus
vv       DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  CLUS_1                         7                          31
  CLUS_2                         2                          19
  CLUS_3                        12                          36
  CLUS_4                        15                          20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q26) MUTATED        6     19     11
  DEL PEAK 11(6Q26) WILD-TYPE     33     37     36
D23V12, multiclass
        clus
vv       DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  CLUS_1                         6                          33
  CLUS_2                        19                          37
  CLUS_3                        11                          36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = DEL PEAK 12(6Q26) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6Q26) MUTATED        7     12      8
  DEL PEAK 12(6Q26) WILD-TYPE     26     12      5
D24V1, multiclass
        clus
vv       DEL PEAK 12(6Q26) MUTATED DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                         7                          26
  CLUS_2                        12                          12
  CLUS_3                         8                           5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 12(6Q26) MUTATED        2      7      1      5      3      2      7
  DEL PEAK 12(6Q26) WILD-TYPE      9      5      3      6     10      7      3
D24V2, multiclass
        clus
vv       DEL PEAK 12(6Q26) MUTATED DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                         2                           9
  CLUS_2                         7                           5
  CLUS_3                         1                           3
  CLUS_4                         5                           6
  CLUS_5                         3                          10
  CLUS_6                         2                           7
  CLUS_7                         7                           3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6Q26) MUTATED       37     26     88
  DEL PEAK 12(6Q26) WILD-TYPE    201    109     67
D24V3, multiclass
        clus
vv       DEL PEAK 12(6Q26) MUTATED DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                        37                         201
  CLUS_2                        26                         109
  CLUS_3                        88                          67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6Q26) MUTATED       27     14     39
  DEL PEAK 12(6Q26) WILD-TYPE    101     62     71
D24V4, multiclass
        clus
vv       DEL PEAK 12(6Q26) MUTATED DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                        27                         101
  CLUS_2                        14                          62
  CLUS_3                        39                          71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(6Q26) MUTATED       34     31     25     23      9      8
  DEL PEAK 12(6Q26) WILD-TYPE     74     31     50     57     70     35
D24V5, multiclass
        clus
vv       DEL PEAK 12(6Q26) MUTATED DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                        34                          74
  CLUS_2                        31                          31
  CLUS_3                        25                          50
  CLUS_4                        23                          57
  CLUS_5                         9                          70
  CLUS_6                         8                          35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6Q26) MUTATED       39     36     55
  DEL PEAK 12(6Q26) WILD-TYPE     82    160     75
D24V6, multiclass
        clus
vv       DEL PEAK 12(6Q26) MUTATED DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                        39                          82
  CLUS_2                        36                         160
  CLUS_3                        55                          75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6Q26) MUTATED       21     54     74
  DEL PEAK 12(6Q26) WILD-TYPE     90    167    119
D24V7, multiclass
        clus
vv       DEL PEAK 12(6Q26) MUTATED DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                        21                          90
  CLUS_2                        54                         167
  CLUS_3                        74                         119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(6Q26) MUTATED       26      6     40     59      9      9
  DEL PEAK 12(6Q26) WILD-TYPE     91     27    143     73     26     16
D24V8, multiclass
        clus
vv       DEL PEAK 12(6Q26) MUTATED DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                        26                          91
  CLUS_2                         6                          27
  CLUS_3                        40                         143
  CLUS_4                        59                          73
  CLUS_5                         9                          26
  CLUS_6                         9                          16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6Q26) MUTATED       24     43     80
  DEL PEAK 12(6Q26) WILD-TYPE    100    161    102
D24V9, multiclass
        clus
vv       DEL PEAK 12(6Q26) MUTATED DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                        24                         100
  CLUS_2                        43                         161
  CLUS_3                        80                         102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(6Q26) MUTATED       38     50     40     19
  DEL PEAK 12(6Q26) WILD-TYPE    106     84    155     18
D24V10, multiclass
        clus
vv       DEL PEAK 12(6Q26) MUTATED DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                        38                         106
  CLUS_2                        50                          84
  CLUS_3                        40                         155
  CLUS_4                        19                          18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(6Q26) MUTATED        7      2     12     15
  DEL PEAK 12(6Q26) WILD-TYPE     31     19     36     20
D24V11, multiclass
        clus
vv       DEL PEAK 12(6Q26) MUTATED DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                         7                          31
  CLUS_2                         2                          19
  CLUS_3                        12                          36
  CLUS_4                        15                          20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6Q26) MUTATED        6     19     11
  DEL PEAK 12(6Q26) WILD-TYPE     33     37     36
D24V12, multiclass
        clus
vv       DEL PEAK 12(6Q26) MUTATED DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                         6                          33
  CLUS_2                        19                          37
  CLUS_3                        11                          36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = DEL PEAK 13(8P23.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(8P23.2) MUTATED        6      7      4
  DEL PEAK 13(8P23.2) WILD-TYPE     27     17      9
D25V1, multiclass
        clus
vv       DEL PEAK 13(8P23.2) MUTATED DEL PEAK 13(8P23.2) WILD-TYPE
  CLUS_1                           6                            27
  CLUS_2                           7                            17
  CLUS_3                           4                             9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(8P23.2) MUTATED        0      3      0      4      3      3
  DEL PEAK 13(8P23.2) WILD-TYPE     11      9      4      7     10      6
                               vv
clus                            CLUS_7
  DEL PEAK 13(8P23.2) MUTATED        4
  DEL PEAK 13(8P23.2) WILD-TYPE      6
D25V2, multiclass
        clus
vv       DEL PEAK 13(8P23.2) MUTATED DEL PEAK 13(8P23.2) WILD-TYPE
  CLUS_1                           0                            11
  CLUS_2                           3                             9
  CLUS_3                           0                             4
  CLUS_4                           4                             7
  CLUS_5                           3                            10
  CLUS_6                           3                             6
  CLUS_7                           4                             6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(8P23.2) MUTATED       43     37     74
  DEL PEAK 13(8P23.2) WILD-TYPE    195     98     81
D25V3, multiclass
        clus
vv       DEL PEAK 13(8P23.2) MUTATED DEL PEAK 13(8P23.2) WILD-TYPE
  CLUS_1                          43                           195
  CLUS_2                          37                            98
  CLUS_3                          74                            81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(8P23.2) MUTATED       28     19     40
  DEL PEAK 13(8P23.2) WILD-TYPE    100     57     70
D25V4, multiclass
        clus
vv       DEL PEAK 13(8P23.2) MUTATED DEL PEAK 13(8P23.2) WILD-TYPE
  CLUS_1                          28                           100
  CLUS_2                          19                            57
  CLUS_3                          40                            70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(8P23.2) MUTATED       22     29     26     24     24      8
  DEL PEAK 13(8P23.2) WILD-TYPE     86     33     49     56     55     35
D25V5, multiclass
        clus
vv       DEL PEAK 13(8P23.2) MUTATED DEL PEAK 13(8P23.2) WILD-TYPE
  CLUS_1                          22                            86
  CLUS_2                          29                            33
  CLUS_3                          26                            49
  CLUS_4                          24                            56
  CLUS_5                          24                            55
  CLUS_6                           8                            35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(8P23.2) MUTATED       32     49     52
  DEL PEAK 13(8P23.2) WILD-TYPE     89    147     78
D25V6, multiclass
        clus
vv       DEL PEAK 13(8P23.2) MUTATED DEL PEAK 13(8P23.2) WILD-TYPE
  CLUS_1                          32                            89
  CLUS_2                          49                           147
  CLUS_3                          52                            78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(8P23.2) MUTATED       23     56     74
  DEL PEAK 13(8P23.2) WILD-TYPE     88    165    119
D25V7, multiclass
        clus
vv       DEL PEAK 13(8P23.2) MUTATED DEL PEAK 13(8P23.2) WILD-TYPE
  CLUS_1                          23                            88
  CLUS_2                          56                           165
  CLUS_3                          74                           119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(8P23.2) MUTATED       31      3     48     60      6      5
  DEL PEAK 13(8P23.2) WILD-TYPE     86     30    135     72     29     20
D25V8, multiclass
        clus
vv       DEL PEAK 13(8P23.2) MUTATED DEL PEAK 13(8P23.2) WILD-TYPE
  CLUS_1                          31                            86
  CLUS_2                           3                            30
  CLUS_3                          48                           135
  CLUS_4                          60                            72
  CLUS_5                           6                            29
  CLUS_6                           5                            20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(8P23.2) MUTATED       36     44     71
  DEL PEAK 13(8P23.2) WILD-TYPE     88    160    111
D25V9, multiclass
        clus
vv       DEL PEAK 13(8P23.2) MUTATED DEL PEAK 13(8P23.2) WILD-TYPE
  CLUS_1                          36                            88
  CLUS_2                          44                           160
  CLUS_3                          71                           111
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(8P23.2) MUTATED       51     39     42     19
  DEL PEAK 13(8P23.2) WILD-TYPE     93     95    153     18
D25V10, multiclass
        clus
vv       DEL PEAK 13(8P23.2) MUTATED DEL PEAK 13(8P23.2) WILD-TYPE
  CLUS_1                          51                            93
  CLUS_2                          39                            95
  CLUS_3                          42                           153
  CLUS_4                          19                            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(8P23.2) MUTATED        8      4     12     15
  DEL PEAK 13(8P23.2) WILD-TYPE     30     17     36     20
D25V11, multiclass
        clus
vv       DEL PEAK 13(8P23.2) MUTATED DEL PEAK 13(8P23.2) WILD-TYPE
  CLUS_1                           8                            30
  CLUS_2                           4                            17
  CLUS_3                          12                            36
  CLUS_4                          15                            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(8P23.2) MUTATED        8     19     12
  DEL PEAK 13(8P23.2) WILD-TYPE     31     37     35
D25V12, multiclass
        clus
vv       DEL PEAK 13(8P23.2) MUTATED DEL PEAK 13(8P23.2) WILD-TYPE
  CLUS_1                           8                            31
  CLUS_2                          19                            37
  CLUS_3                          12                            35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = DEL PEAK 14(9P23) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(9P23) MUTATED        5     12      1
  DEL PEAK 14(9P23) WILD-TYPE     28     12     12
D26V1, multiclass
        clus
vv       DEL PEAK 14(9P23) MUTATED DEL PEAK 14(9P23) WILD-TYPE
  CLUS_1                         5                          28
  CLUS_2                        12                          12
  CLUS_3                         1                          12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 14(9P23) MUTATED        2      7      0      5      1      2      1
  DEL PEAK 14(9P23) WILD-TYPE      9      5      4      6     12      7      9
D26V2, multiclass
        clus
vv       DEL PEAK 14(9P23) MUTATED DEL PEAK 14(9P23) WILD-TYPE
  CLUS_1                         2                           9
  CLUS_2                         7                           5
  CLUS_3                         0                           4
  CLUS_4                         5                           6
  CLUS_5                         1                          12
  CLUS_6                         2                           7
  CLUS_7                         1                           9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(9P23) MUTATED        9     34    109
  DEL PEAK 14(9P23) WILD-TYPE    229    101     46
D26V3, multiclass
        clus
vv       DEL PEAK 14(9P23) MUTATED DEL PEAK 14(9P23) WILD-TYPE
  CLUS_1                         9                         229
  CLUS_2                        34                         101
  CLUS_3                       109                          46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(9P23) MUTATED        6     21     68
  DEL PEAK 14(9P23) WILD-TYPE    122     55     42
D26V4, multiclass
        clus
vv       DEL PEAK 14(9P23) MUTATED DEL PEAK 14(9P23) WILD-TYPE
  CLUS_1                         6                         122
  CLUS_2                        21                          55
  CLUS_3                        68                          42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(9P23) MUTATED       17     38     31     21     19     10
  DEL PEAK 14(9P23) WILD-TYPE     91     24     44     59     60     33
D26V5, multiclass
        clus
vv       DEL PEAK 14(9P23) MUTATED DEL PEAK 14(9P23) WILD-TYPE
  CLUS_1                        17                          91
  CLUS_2                        38                          24
  CLUS_3                        31                          44
  CLUS_4                        21                          59
  CLUS_5                        19                          60
  CLUS_6                        10                          33
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(9P23) MUTATED       34     42     60
  DEL PEAK 14(9P23) WILD-TYPE     87    154     70
D26V6, multiclass
        clus
vv       DEL PEAK 14(9P23) MUTATED DEL PEAK 14(9P23) WILD-TYPE
  CLUS_1                        34                          87
  CLUS_2                        42                         154
  CLUS_3                        60                          70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(9P23) MUTATED       16     25    110
  DEL PEAK 14(9P23) WILD-TYPE     95    196     83
D26V7, multiclass
        clus
vv       DEL PEAK 14(9P23) MUTATED DEL PEAK 14(9P23) WILD-TYPE
  CLUS_1                        16                          95
  CLUS_2                        25                         196
  CLUS_3                       110                          83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(9P23) MUTATED       32      3     15     84     13      4
  DEL PEAK 14(9P23) WILD-TYPE     85     30    168     48     22     21
D26V8, multiclass
        clus
vv       DEL PEAK 14(9P23) MUTATED DEL PEAK 14(9P23) WILD-TYPE
  CLUS_1                        32                          85
  CLUS_2                         3                          30
  CLUS_3                        15                         168
  CLUS_4                        84                          48
  CLUS_5                        13                          22
  CLUS_6                         4                          21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(9P23) MUTATED       26     25     96
  DEL PEAK 14(9P23) WILD-TYPE     98    179     86
D26V9, multiclass
        clus
vv       DEL PEAK 14(9P23) MUTATED DEL PEAK 14(9P23) WILD-TYPE
  CLUS_1                        26                          98
  CLUS_2                        25                         179
  CLUS_3                        96                          86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(9P23) MUTATED       44     56     23     24
  DEL PEAK 14(9P23) WILD-TYPE    100     78    172     13
D26V10, multiclass
        clus
vv       DEL PEAK 14(9P23) MUTATED DEL PEAK 14(9P23) WILD-TYPE
  CLUS_1                        44                         100
  CLUS_2                        56                          78
  CLUS_3                        23                         172
  CLUS_4                        24                          13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(9P23) MUTATED        8      4      5     16
  DEL PEAK 14(9P23) WILD-TYPE     30     17     43     19
D26V11, multiclass
        clus
vv       DEL PEAK 14(9P23) MUTATED DEL PEAK 14(9P23) WILD-TYPE
  CLUS_1                         8                          30
  CLUS_2                         4                          17
  CLUS_3                         5                          43
  CLUS_4                        16                          19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(9P23) MUTATED        8     18      7
  DEL PEAK 14(9P23) WILD-TYPE     31     38     40
D26V12, multiclass
        clus
vv       DEL PEAK 14(9P23) MUTATED DEL PEAK 14(9P23) WILD-TYPE
  CLUS_1                         8                          31
  CLUS_2                        18                          38
  CLUS_3                         7                          40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = DEL PEAK 15(9P21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(9P21.3) MUTATED        5     13      1
  DEL PEAK 15(9P21.3) WILD-TYPE     28     11     12
D27V1, multiclass
        clus
vv       DEL PEAK 15(9P21.3) MUTATED DEL PEAK 15(9P21.3) WILD-TYPE
  CLUS_1                           5                            28
  CLUS_2                          13                            11
  CLUS_3                           1                            12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(9P21.3) MUTATED        2      7      0      6      1      2
  DEL PEAK 15(9P21.3) WILD-TYPE      9      5      4      5     12      7
                               vv
clus                            CLUS_7
  DEL PEAK 15(9P21.3) MUTATED        1
  DEL PEAK 15(9P21.3) WILD-TYPE      9
D27V2, multiclass
        clus
vv       DEL PEAK 15(9P21.3) MUTATED DEL PEAK 15(9P21.3) WILD-TYPE
  CLUS_1                           2                             9
  CLUS_2                           7                             5
  CLUS_3                           0                             4
  CLUS_4                           6                             5
  CLUS_5                           1                            12
  CLUS_6                           2                             7
  CLUS_7                           1                             9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(9P21.3) MUTATED       12     35    112
  DEL PEAK 15(9P21.3) WILD-TYPE    226    100     43
D27V3, multiclass
        clus
vv       DEL PEAK 15(9P21.3) MUTATED DEL PEAK 15(9P21.3) WILD-TYPE
  CLUS_1                          12                           226
  CLUS_2                          35                           100
  CLUS_3                         112                            43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(9P21.3) MUTATED        6     24     68
  DEL PEAK 15(9P21.3) WILD-TYPE    122     52     42
D27V4, multiclass
        clus
vv       DEL PEAK 15(9P21.3) MUTATED DEL PEAK 15(9P21.3) WILD-TYPE
  CLUS_1                           6                           122
  CLUS_2                          24                            52
  CLUS_3                          68                            42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(9P21.3) MUTATED       18     40     31     22     22     10
  DEL PEAK 15(9P21.3) WILD-TYPE     90     22     44     58     57     33
D27V5, multiclass
        clus
vv       DEL PEAK 15(9P21.3) MUTATED DEL PEAK 15(9P21.3) WILD-TYPE
  CLUS_1                          18                            90
  CLUS_2                          40                            22
  CLUS_3                          31                            44
  CLUS_4                          22                            58
  CLUS_5                          22                            57
  CLUS_6                          10                            33
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(9P21.3) MUTATED       34     45     64
  DEL PEAK 15(9P21.3) WILD-TYPE     87    151     66
D27V6, multiclass
        clus
vv       DEL PEAK 15(9P21.3) MUTATED DEL PEAK 15(9P21.3) WILD-TYPE
  CLUS_1                          34                            87
  CLUS_2                          45                           151
  CLUS_3                          64                            66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(9P21.3) MUTATED       18     27    113
  DEL PEAK 15(9P21.3) WILD-TYPE     93    194     80
D27V7, multiclass
        clus
vv       DEL PEAK 15(9P21.3) MUTATED DEL PEAK 15(9P21.3) WILD-TYPE
  CLUS_1                          18                            93
  CLUS_2                          27                           194
  CLUS_3                         113                            80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(9P21.3) MUTATED       32      2     16     90     14      4
  DEL PEAK 15(9P21.3) WILD-TYPE     85     31    167     42     21     21
D27V8, multiclass
        clus
vv       DEL PEAK 15(9P21.3) MUTATED DEL PEAK 15(9P21.3) WILD-TYPE
  CLUS_1                          32                            85
  CLUS_2                           2                            31
  CLUS_3                          16                           167
  CLUS_4                          90                            42
  CLUS_5                          14                            21
  CLUS_6                           4                            21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(9P21.3) MUTATED       29     26     98
  DEL PEAK 15(9P21.3) WILD-TYPE     95    178     84
D27V9, multiclass
        clus
vv       DEL PEAK 15(9P21.3) MUTATED DEL PEAK 15(9P21.3) WILD-TYPE
  CLUS_1                          29                            95
  CLUS_2                          26                           178
  CLUS_3                          98                            84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(9P21.3) MUTATED       48     55     24     26
  DEL PEAK 15(9P21.3) WILD-TYPE     96     79    171     11
D27V10, multiclass
        clus
vv       DEL PEAK 15(9P21.3) MUTATED DEL PEAK 15(9P21.3) WILD-TYPE
  CLUS_1                          48                            96
  CLUS_2                          55                            79
  CLUS_3                          24                           171
  CLUS_4                          26                            11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(9P21.3) MUTATED        8      5      5     17
  DEL PEAK 15(9P21.3) WILD-TYPE     30     16     43     18
D27V11, multiclass
        clus
vv       DEL PEAK 15(9P21.3) MUTATED DEL PEAK 15(9P21.3) WILD-TYPE
  CLUS_1                           8                            30
  CLUS_2                           5                            16
  CLUS_3                           5                            43
  CLUS_4                          17                            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(9P21.3) MUTATED        8     21      6
  DEL PEAK 15(9P21.3) WILD-TYPE     31     35     41
D27V12, multiclass
        clus
vv       DEL PEAK 15(9P21.3) MUTATED DEL PEAK 15(9P21.3) WILD-TYPE
  CLUS_1                           8                            31
  CLUS_2                          21                            35
  CLUS_3                           6                            41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(28) Variable = DEL PEAK 16(10Q23.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(10Q23.31) MUTATED        5      6      4
  DEL PEAK 16(10Q23.31) WILD-TYPE     28     18      9
D28V1, multiclass
        clus
vv       DEL PEAK 16(10Q23.31) MUTATED DEL PEAK 16(10Q23.31) WILD-TYPE
  CLUS_1                             5                              28
  CLUS_2                             6                              18
  CLUS_3                             4                               9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(10Q23.31) MUTATED        1      4      0      2      3      1
  DEL PEAK 16(10Q23.31) WILD-TYPE     10      8      4      9     10      8
                                 vv
clus                              CLUS_7
  DEL PEAK 16(10Q23.31) MUTATED        4
  DEL PEAK 16(10Q23.31) WILD-TYPE      6
D28V2, multiclass
        clus
vv       DEL PEAK 16(10Q23.31) MUTATED DEL PEAK 16(10Q23.31) WILD-TYPE
  CLUS_1                             1                              10
  CLUS_2                             4                               8
  CLUS_3                             0                               4
  CLUS_4                             2                               9
  CLUS_5                             3                              10
  CLUS_6                             1                               8
  CLUS_7                             4                               6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(10Q23.31) MUTATED       17     29     50
  DEL PEAK 16(10Q23.31) WILD-TYPE    221    106    105
D28V3, multiclass
        clus
vv       DEL PEAK 16(10Q23.31) MUTATED DEL PEAK 16(10Q23.31) WILD-TYPE
  CLUS_1                            17                             221
  CLUS_2                            29                             106
  CLUS_3                            50                             105
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(10Q23.31) MUTATED       17      9     33
  DEL PEAK 16(10Q23.31) WILD-TYPE    111     67     77
D28V4, multiclass
        clus
vv       DEL PEAK 16(10Q23.31) MUTATED DEL PEAK 16(10Q23.31) WILD-TYPE
  CLUS_1                            17                             111
  CLUS_2                             9                              67
  CLUS_3                            33                              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(10Q23.31) MUTATED       17     14     13     16     15      8
  DEL PEAK 16(10Q23.31) WILD-TYPE     91     48     62     64     64     35
D28V5, multiclass
        clus
vv       DEL PEAK 16(10Q23.31) MUTATED DEL PEAK 16(10Q23.31) WILD-TYPE
  CLUS_1                            17                              91
  CLUS_2                            14                              48
  CLUS_3                            13                              62
  CLUS_4                            16                              64
  CLUS_5                            15                              64
  CLUS_6                             8                              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(10Q23.31) MUTATED       20     27     36
  DEL PEAK 16(10Q23.31) WILD-TYPE    101    169     94
D28V6, multiclass
        clus
vv       DEL PEAK 16(10Q23.31) MUTATED DEL PEAK 16(10Q23.31) WILD-TYPE
  CLUS_1                            20                             101
  CLUS_2                            27                             169
  CLUS_3                            36                              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(10Q23.31) MUTATED       21     30     44
  DEL PEAK 16(10Q23.31) WILD-TYPE     90    191    149
D28V7, multiclass
        clus
vv       DEL PEAK 16(10Q23.31) MUTATED DEL PEAK 16(10Q23.31) WILD-TYPE
  CLUS_1                            21                              90
  CLUS_2                            30                             191
  CLUS_3                            44                             149
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(10Q23.31) MUTATED       22      3     21     37      3      9
  DEL PEAK 16(10Q23.31) WILD-TYPE     95     30    162     95     32     16
D28V8, multiclass
        clus
vv       DEL PEAK 16(10Q23.31) MUTATED DEL PEAK 16(10Q23.31) WILD-TYPE
  CLUS_1                            22                              95
  CLUS_2                             3                              30
  CLUS_3                            21                             162
  CLUS_4                            37                              95
  CLUS_5                             3                              32
  CLUS_6                             9                              16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(10Q23.31) MUTATED       22     27     45
  DEL PEAK 16(10Q23.31) WILD-TYPE    102    177    137
D28V9, multiclass
        clus
vv       DEL PEAK 16(10Q23.31) MUTATED DEL PEAK 16(10Q23.31) WILD-TYPE
  CLUS_1                            22                             102
  CLUS_2                            27                             177
  CLUS_3                            45                             137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(10Q23.31) MUTATED       21     35     23     15
  DEL PEAK 16(10Q23.31) WILD-TYPE    123     99    172     22
D28V10, multiclass
        clus
vv       DEL PEAK 16(10Q23.31) MUTATED DEL PEAK 16(10Q23.31) WILD-TYPE
  CLUS_1                            21                             123
  CLUS_2                            35                              99
  CLUS_3                            23                             172
  CLUS_4                            15                              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(10Q23.31) MUTATED        5      3      6      7
  DEL PEAK 16(10Q23.31) WILD-TYPE     33     18     42     28
D28V11, multiclass
        clus
vv       DEL PEAK 16(10Q23.31) MUTATED DEL PEAK 16(10Q23.31) WILD-TYPE
  CLUS_1                             5                              33
  CLUS_2                             3                              18
  CLUS_3                             6                              42
  CLUS_4                             7                              28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(10Q23.31) MUTATED        5     11      5
  DEL PEAK 16(10Q23.31) WILD-TYPE     34     45     42
D28V12, multiclass
        clus
vv       DEL PEAK 16(10Q23.31) MUTATED DEL PEAK 16(10Q23.31) WILD-TYPE
  CLUS_1                             5                              34
  CLUS_2                            11                              45
  CLUS_3                             5                              42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(29) Variable = DEL PEAK 17(13Q14.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(13Q14.2) MUTATED        1      7      3
  DEL PEAK 17(13Q14.2) WILD-TYPE     32     17     10
D29V1, multiclass
        clus
vv       DEL PEAK 17(13Q14.2) MUTATED DEL PEAK 17(13Q14.2) WILD-TYPE
  CLUS_1                            1                             32
  CLUS_2                            7                             17
  CLUS_3                            3                             10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(13Q14.2) MUTATED        0      3      0      4      1      0
  DEL PEAK 17(13Q14.2) WILD-TYPE     11      9      4      7     12      9
                                vv
clus                             CLUS_7
  DEL PEAK 17(13Q14.2) MUTATED        3
  DEL PEAK 17(13Q14.2) WILD-TYPE      7
D29V2, multiclass
        clus
vv       DEL PEAK 17(13Q14.2) MUTATED DEL PEAK 17(13Q14.2) WILD-TYPE
  CLUS_1                            0                             11
  CLUS_2                            3                              9
  CLUS_3                            0                              4
  CLUS_4                            4                              7
  CLUS_5                            1                             12
  CLUS_6                            0                              9
  CLUS_7                            3                              7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(13Q14.2) MUTATED       11     23     48
  DEL PEAK 17(13Q14.2) WILD-TYPE    227    112    107
D29V3, multiclass
        clus
vv       DEL PEAK 17(13Q14.2) MUTATED DEL PEAK 17(13Q14.2) WILD-TYPE
  CLUS_1                           11                            227
  CLUS_2                           23                            112
  CLUS_3                           48                            107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(13Q14.2) MUTATED        8     16     27
  DEL PEAK 17(13Q14.2) WILD-TYPE    120     60     83
D29V4, multiclass
        clus
vv       DEL PEAK 17(13Q14.2) MUTATED DEL PEAK 17(13Q14.2) WILD-TYPE
  CLUS_1                            8                            120
  CLUS_2                           16                             60
  CLUS_3                           27                             83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(13Q14.2) MUTATED        3     22     15     14     11      7
  DEL PEAK 17(13Q14.2) WILD-TYPE    105     40     60     66     68     36
D29V5, multiclass
        clus
vv       DEL PEAK 17(13Q14.2) MUTATED DEL PEAK 17(13Q14.2) WILD-TYPE
  CLUS_1                            3                            105
  CLUS_2                           22                             40
  CLUS_3                           15                             60
  CLUS_4                           14                             66
  CLUS_5                           11                             68
  CLUS_6                            7                             36
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(13Q14.2) MUTATED       15     20     37
  DEL PEAK 17(13Q14.2) WILD-TYPE    106    176     93
D29V6, multiclass
        clus
vv       DEL PEAK 17(13Q14.2) MUTATED DEL PEAK 17(13Q14.2) WILD-TYPE
  CLUS_1                           15                            106
  CLUS_2                           20                            176
  CLUS_3                           37                             93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(13Q14.2) MUTATED       13     19     50
  DEL PEAK 17(13Q14.2) WILD-TYPE     98    202    143
D29V7, multiclass
        clus
vv       DEL PEAK 17(13Q14.2) MUTATED DEL PEAK 17(13Q14.2) WILD-TYPE
  CLUS_1                           13                             98
  CLUS_2                           19                            202
  CLUS_3                           50                            143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(13Q14.2) MUTATED        7      2     15     43      8      7
  DEL PEAK 17(13Q14.2) WILD-TYPE    110     31    168     89     27     18
D29V8, multiclass
        clus
vv       DEL PEAK 17(13Q14.2) MUTATED DEL PEAK 17(13Q14.2) WILD-TYPE
  CLUS_1                            7                            110
  CLUS_2                            2                             31
  CLUS_3                           15                            168
  CLUS_4                           43                             89
  CLUS_5                            8                             27
  CLUS_6                            7                             18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(13Q14.2) MUTATED       14     16     50
  DEL PEAK 17(13Q14.2) WILD-TYPE    110    188    132
D29V9, multiclass
        clus
vv       DEL PEAK 17(13Q14.2) MUTATED DEL PEAK 17(13Q14.2) WILD-TYPE
  CLUS_1                           14                            110
  CLUS_2                           16                            188
  CLUS_3                           50                            132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(13Q14.2) MUTATED       20     33     14     13
  DEL PEAK 17(13Q14.2) WILD-TYPE    124    101    181     24
D29V10, multiclass
        clus
vv       DEL PEAK 17(13Q14.2) MUTATED DEL PEAK 17(13Q14.2) WILD-TYPE
  CLUS_1                           20                            124
  CLUS_2                           33                            101
  CLUS_3                           14                            181
  CLUS_4                           13                             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(13Q14.2) MUTATED        6      1      4      9
  DEL PEAK 17(13Q14.2) WILD-TYPE     32     20     44     26
D29V11, multiclass
        clus
vv       DEL PEAK 17(13Q14.2) MUTATED DEL PEAK 17(13Q14.2) WILD-TYPE
  CLUS_1                            6                             32
  CLUS_2                            1                             20
  CLUS_3                            4                             44
  CLUS_4                            9                             26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(13Q14.2) MUTATED        6     11      3
  DEL PEAK 17(13Q14.2) WILD-TYPE     33     45     44
D29V12, multiclass
        clus
vv       DEL PEAK 17(13Q14.2) MUTATED DEL PEAK 17(13Q14.2) WILD-TYPE
  CLUS_1                            6                             33
  CLUS_2                           11                             45
  CLUS_3                            3                             44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(30) Variable = DEL PEAK 18(14Q31.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(14Q31.1) MUTATED       10     19      2
  DEL PEAK 18(14Q31.1) WILD-TYPE     23      5     11
D30V1, multiclass
        clus
vv       DEL PEAK 18(14Q31.1) MUTATED DEL PEAK 18(14Q31.1) WILD-TYPE
  CLUS_1                           10                             23
  CLUS_2                           19                              5
  CLUS_3                            2                             11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(14Q31.1) MUTATED        4      7      1     11      5      1
  DEL PEAK 18(14Q31.1) WILD-TYPE      7      5      3      0      8      8
                                vv
clus                             CLUS_7
  DEL PEAK 18(14Q31.1) MUTATED        2
  DEL PEAK 18(14Q31.1) WILD-TYPE      8
D30V2, multiclass
        clus
vv       DEL PEAK 18(14Q31.1) MUTATED DEL PEAK 18(14Q31.1) WILD-TYPE
  CLUS_1                            4                              7
  CLUS_2                            7                              5
  CLUS_3                            1                              3
  CLUS_4                           11                              0
  CLUS_5                            5                              8
  CLUS_6                            1                              8
  CLUS_7                            2                              8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(14Q31.1) MUTATED       70     47    111
  DEL PEAK 18(14Q31.1) WILD-TYPE    168     88     44
D30V3, multiclass
        clus
vv       DEL PEAK 18(14Q31.1) MUTATED DEL PEAK 18(14Q31.1) WILD-TYPE
  CLUS_1                           70                            168
  CLUS_2                           47                             88
  CLUS_3                          111                             44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(14Q31.1) MUTATED       32     36     65
  DEL PEAK 18(14Q31.1) WILD-TYPE     96     40     45
D30V4, multiclass
        clus
vv       DEL PEAK 18(14Q31.1) MUTATED DEL PEAK 18(14Q31.1) WILD-TYPE
  CLUS_1                           32                             96
  CLUS_2                           36                             40
  CLUS_3                           65                             45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(14Q31.1) MUTATED       37     41     56     27     26     13
  DEL PEAK 18(14Q31.1) WILD-TYPE     71     21     19     53     53     30
D30V5, multiclass
        clus
vv       DEL PEAK 18(14Q31.1) MUTATED DEL PEAK 18(14Q31.1) WILD-TYPE
  CLUS_1                           37                             71
  CLUS_2                           41                             21
  CLUS_3                           56                             19
  CLUS_4                           27                             53
  CLUS_5                           26                             53
  CLUS_6                           13                             30
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(14Q31.1) MUTATED       69     64     67
  DEL PEAK 18(14Q31.1) WILD-TYPE     52    132     63
D30V6, multiclass
        clus
vv       DEL PEAK 18(14Q31.1) MUTATED DEL PEAK 18(14Q31.1) WILD-TYPE
  CLUS_1                           69                             52
  CLUS_2                           64                            132
  CLUS_3                           67                             63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(14Q31.1) MUTATED       21     73    131
  DEL PEAK 18(14Q31.1) WILD-TYPE     90    148     62
D30V7, multiclass
        clus
vv       DEL PEAK 18(14Q31.1) MUTATED DEL PEAK 18(14Q31.1) WILD-TYPE
  CLUS_1                           21                             90
  CLUS_2                           73                            148
  CLUS_3                          131                             62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(14Q31.1) MUTATED       45      7     57     81     33      2
  DEL PEAK 18(14Q31.1) WILD-TYPE     72     26    126     51      2     23
D30V8, multiclass
        clus
vv       DEL PEAK 18(14Q31.1) MUTATED DEL PEAK 18(14Q31.1) WILD-TYPE
  CLUS_1                           45                             72
  CLUS_2                            7                             26
  CLUS_3                           57                            126
  CLUS_4                           81                             51
  CLUS_5                           33                              2
  CLUS_6                            2                             23
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(14Q31.1) MUTATED       38     66    118
  DEL PEAK 18(14Q31.1) WILD-TYPE     86    138     64
D30V9, multiclass
        clus
vv       DEL PEAK 18(14Q31.1) MUTATED DEL PEAK 18(14Q31.1) WILD-TYPE
  CLUS_1                           38                             86
  CLUS_2                           66                            138
  CLUS_3                          118                             64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(14Q31.1) MUTATED       52     84     62     24
  DEL PEAK 18(14Q31.1) WILD-TYPE     92     50    133     13
D30V10, multiclass
        clus
vv       DEL PEAK 18(14Q31.1) MUTATED DEL PEAK 18(14Q31.1) WILD-TYPE
  CLUS_1                           52                             92
  CLUS_2                           84                             50
  CLUS_3                           62                            133
  CLUS_4                           24                             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(14Q31.1) MUTATED       14      5     15     19
  DEL PEAK 18(14Q31.1) WILD-TYPE     24     16     33     16
D30V11, multiclass
        clus
vv       DEL PEAK 18(14Q31.1) MUTATED DEL PEAK 18(14Q31.1) WILD-TYPE
  CLUS_1                           14                             24
  CLUS_2                            5                             16
  CLUS_3                           15                             33
  CLUS_4                           19                             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(14Q31.1) MUTATED       15     20     18
  DEL PEAK 18(14Q31.1) WILD-TYPE     24     36     29
D30V12, multiclass
        clus
vv       DEL PEAK 18(14Q31.1) MUTATED DEL PEAK 18(14Q31.1) WILD-TYPE
  CLUS_1                           15                             24
  CLUS_2                           20                             36
  CLUS_3                           18                             29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
