[1] "R version 2.15.3 (2013-03-01)"
[1] "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "dx" ""  
[1] "dx" " " 
[1] "dx" " " 
[1] "opt:  MRNASEQ_EXPR"
[1] "vtyp==survival in table1 generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==multiclass in table1 generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==binary in table1 table generation"
[1] "vtyp==binary in table1 table generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==multiclass in table1 generation"
[1] "vtyp==binary in table1 table generation"
                              Clinical feature               
DAYS_TO_DEATH_OR_LAST_FUP     "DAYS_TO_DEATH_OR_LAST_FUP"    
YEARS_TO_BIRTH                "YEARS_TO_BIRTH"               
NEOPLASM_DISEASESTAGE         "NEOPLASM_DISEASESTAGE"        
PATHOLOGY_T_STAGE             "PATHOLOGY_T_STAGE"            
PATHOLOGY_N_STAGE             "PATHOLOGY_N_STAGE"            
PATHOLOGY_M_STAGE             "PATHOLOGY_M_STAGE"            
GENDER                        "GENDER"                       
KARNOFSKY_PERFORMANCE_SCORE   "KARNOFSKY_PERFORMANCE_SCORE"  
NUMBER_PACK_YEARS_SMOKED      "NUMBER_PACK_YEARS_SMOKED"     
YEAR_OF_TOBACCO_SMOKING_ONSET "YEAR_OF_TOBACCO_SMOKING_ONSET"
RACE                          "RACE"                         
ETHNICITY                     "ETHNICITY"                    
                              Statistical test            Significant genes
DAYS_TO_DEATH_OR_LAST_FUP     "Cox regression test"       "N=30"           
YEARS_TO_BIRTH                "Spearman correlation test" "N=30"           
NEOPLASM_DISEASESTAGE         "Kruskal-Wallis test"       "N=30"           
PATHOLOGY_T_STAGE             "Spearman correlation test" "N=30"           
PATHOLOGY_N_STAGE             "Spearman correlation test" "N=30"           
PATHOLOGY_M_STAGE             "Wilcoxon test"             "N=30"           
GENDER                        "Wilcoxon test"             "N=10"           
KARNOFSKY_PERFORMANCE_SCORE   "Spearman correlation test" "N=30"           
NUMBER_PACK_YEARS_SMOKED      "Spearman correlation test" "N=0"            
YEAR_OF_TOBACCO_SMOKING_ONSET "Spearman correlation test" "N=2"            
RACE                          "Kruskal-Wallis test"       "N=30"           
ETHNICITY                     "Wilcoxon test"             "N=0"            
                              Associated with                       
DAYS_TO_DEATH_OR_LAST_FUP     "shorter survival"                    
YEARS_TO_BIRTH                "older"                               
NEOPLASM_DISEASESTAGE         " "                                   
PATHOLOGY_T_STAGE             "higher stage"                        
PATHOLOGY_N_STAGE             "higher stage"                        
PATHOLOGY_M_STAGE             "class1"                              
GENDER                        "male"                                
KARNOFSKY_PERFORMANCE_SCORE   "higher score"                        
NUMBER_PACK_YEARS_SMOKED      " "                                   
YEAR_OF_TOBACCO_SMOKING_ONSET "higher year_of_tobacco_smoking_onset"
RACE                          " "                                   
ETHNICITY                     " "                                   
                              &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
DAYS_TO_DEATH_OR_LAST_FUP     "N=19"                                                                                    
YEARS_TO_BIRTH                "N=18"                                                                                    
NEOPLASM_DISEASESTAGE         " "                                                                                       
PATHOLOGY_T_STAGE             "N=30"                                                                                    
PATHOLOGY_N_STAGE             "N=22"                                                                                    
PATHOLOGY_M_STAGE             "N=30"                                                                                    
GENDER                        "N=10"                                                                                    
KARNOFSKY_PERFORMANCE_SCORE   "N=22"                                                                                    
NUMBER_PACK_YEARS_SMOKED      " "                                                                                       
YEAR_OF_TOBACCO_SMOKING_ONSET "N=1"                                                                                     
RACE                          " "                                                                                       
ETHNICITY                     " "                                                                                       
                              Associated with                             
DAYS_TO_DEATH_OR_LAST_FUP     "longer survival"                     "N=11"
YEARS_TO_BIRTH                "younger"                             "N=12"
NEOPLASM_DISEASESTAGE         " "                                   " "   
PATHOLOGY_T_STAGE             "lower stage"                         "N=0" 
PATHOLOGY_N_STAGE             "lower stage"                         "N=8" 
PATHOLOGY_M_STAGE             "class0"                              "N=0" 
GENDER                        "female"                              "N=0" 
KARNOFSKY_PERFORMANCE_SCORE   "lower score"                         "N=8" 
NUMBER_PACK_YEARS_SMOKED      " "                                   " "   
YEAR_OF_TOBACCO_SMOKING_ONSET "lower year_of_tobacco_smoking_onset" "N=1" 
RACE                          " "                                   " "   
ETHNICITY                     " "                                   " "   
[1] "vtyp==survival in basici table generation"
[1] "check. how many intervals of data quantile for survival curve?"
[1] 4
[1] "check. how many intervals of data quantile for survival curve?"
[1] 4
[1] "check. how many intervals of data quantile for survival curve?"
[1] 4
[1] "check. how many intervals of data quantile for survival curve?"
[1] 4
[1] "check. how many intervals of data quantile for survival curve?"
[1] 4
[1] "check. how many intervals of data quantile for survival curve?"
[1] 4
[1] "check. how many intervals of data quantile for survival curve?"
[1] 4
[1] "check. how many intervals of data quantile for survival curve?"
[1] 4
[1] "check. how many intervals of data quantile for survival curve?"
[1] 4
[1] "check. how many intervals of data quantile for survival curve?"
[1] 4
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==multiclass in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==binary in basici table generation"
[1] "vtyp==binary in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==multiclass in basici table generation"
[1] "vtyp==binary in basici table generation"
