Classifier directory BuiltClassifiers created under CHASM/BuiltClassifiers
/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_CHASM/broadinstitute.org/cancer.genome.analysis/10194/33/CHASM/snvGetTranscriptList
Generating set of 5000 Passenger Mutations
Passenger generation complete
Generating set of 5000 Null Mutations
Null generation complete
Retrieving features for training set from SNVBox
Data retrieval took 985.880581856s

Training set features stored in Train.arff
Retrieving features for null set from SNVBox
Data retrieval took 489.776200056s

Null set features stored in Null.arff
Training Random Forest Classifier
Trainset classification error is  12.98% of    9948 (kappa: 0.7392 )



Classisfier training time: 557.738591194

Classifier training complete
/xchip/cga/gdac-prod/tcga-gdac/jobResults/PREPROCESSCHASM/KIRP-TP/15174864/mutationslist.arff
Data retrieval took 805.238744974s

Features retrieved for input mutations as .arff file
Output file generated
/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CHASM/KIRP-TP/15178122
/xchip/cga/gdac-prod/tcga-gdac/jobResults/PREPROCESSCHASM/KIRP-TP/15174864
